Citrus Sinensis ID: 009977
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | 2.2.26 [Sep-21-2011] | |||||||
| Q3E9F0 | 506 | Pentatricopeptide repeat- | yes | no | 0.884 | 0.911 | 0.587 | 1e-163 | |
| Q9FNL2 | 472 | Pentatricopeptide repeat- | no | no | 0.831 | 0.917 | 0.322 | 2e-59 | |
| Q9FFE3 | 535 | Pentatricopeptide repeat- | no | no | 0.811 | 0.790 | 0.313 | 1e-55 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.938 | 0.648 | 0.254 | 2e-55 | |
| Q9LQQ1 | 459 | Pentatricopeptide repeat- | no | no | 0.735 | 0.834 | 0.311 | 5e-55 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.786 | 0.561 | 0.296 | 8e-55 | |
| Q9SS81 | 687 | Pentatricopeptide repeat- | no | no | 0.848 | 0.643 | 0.279 | 4e-54 | |
| O49436 | 660 | Pentatricopeptide repeat- | no | no | 0.794 | 0.627 | 0.295 | 2e-53 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.595 | 0.518 | 0.342 | 2e-53 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.808 | 0.668 | 0.308 | 7e-53 |
| >sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 576 bits (1484), Expect = e-163, Method: Compositional matrix adjust.
Identities = 271/461 (58%), Positives = 354/461 (76%)
Query: 51 VDARKRSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKK 110
V+ +++FISH +A+SL+K E++PQ L+IFN S+QKGFNHNNATY+ +LD L R+KK
Sbjct: 45 VETNPKTKFISHESAVSLMKRERDPQGVLDIFNKASQQKGFNHNNATYSVLLDNLVRHKK 104
Query: 111 FEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIS 170
F AVDA+L QM YETC+F E +FLNLM+HFS LH++V+EMF+ I I R KPSL AIS
Sbjct: 105 FLAVDAILHQMKYETCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAIS 164
Query: 171 TCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKK 230
TCLNLLI+S +V+L++ L Y+ +L L+PNTCIFNIL+KHHCK G + AF V++EMK+
Sbjct: 165 TCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKR 224
Query: 231 SQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV 290
S +SYPN ITYSTL+D L + R +EA+ELFE+M+SK+ I PD +T+NV+I+GFCR G+V
Sbjct: 225 SGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEV 284
Query: 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTL 350
+RAKKI++FMK NGCNPNV+NY+ LMNGFCK GK+QEAK+ FDE+K LK DT+GYTTL
Sbjct: 285 ERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTL 344
Query: 351 INCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI 410
+NCFCR G DEA++LL EMK C+AD +T+N+IL GL EG+ EEAL ML++ +G+
Sbjct: 345 MNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGV 404
Query: 411 YLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAI 470
+LNK SYRI+LN C GELEKA++ L +M RG PH+AT NEL+VRLC++G E
Sbjct: 405 HLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYTEIGVR 464
Query: 471 ALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELV 511
L G + +G P SW +VE IC+ RKL+ FELLD LV
Sbjct: 465 VLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLV 505
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/446 (32%), Positives = 233/446 (52%), Gaps = 13/446 (2%)
Query: 55 KRSRFISHGAAISLIKCEKEPQCALEIFNTVSEQ--KGFNHNNATYATILDKLARYKKFE 112
K S+ I+ I L++ EK+ + ++ +F++ + + G+ H+ +++ ++ +L KF+
Sbjct: 9 KWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFK 68
Query: 113 AVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTC 172
A + ++ +M E C E I L++ + + L +FHK+ + PS KA T
Sbjct: 69 AAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCD-PSQKAYVTV 127
Query: 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR-GTLESAFEVLKEMKKS 231
L +L+E NQ++LA F K + + + L P N+LIK C+ GT+++ ++ EM K
Sbjct: 128 LAILVEENQLNLAFKFYK-NMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKR 186
Query: 232 QMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVD 291
P+ TY TLI GLC+ GR EA +LF EMV KD P +TY LI+G C VD
Sbjct: 187 GCD-PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD-CAPTVVTYTSLINGLCGSKNVD 244
Query: 292 RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLI 351
A + +E MK+ G PNVF Y++LM+G CK+G+ +A E+F+ M +P+ + YTTLI
Sbjct: 245 EAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304
Query: 352 NCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIY 411
C+ ++ EA+ELL M +G K D + ++ G C K EA L+++ GI
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGIT 364
Query: 412 LNKASYRIVLNFSCQ------KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465
N+ ++ I + S + +A L M RG T L+ LCK G
Sbjct: 365 PNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEF 424
Query: 466 EDAAIALFGLVEMGFKPESDSWALLV 491
+ A + +V G P +W LL+
Sbjct: 425 QKAVQLVDEIVTDGCIPSKGTWKLLI 450
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 231/430 (53%), Gaps = 7/430 (1%)
Query: 66 ISLIKCEKEPQCALEIFNTVSE-QKGFNHNNATYATILDKLARYKKFEAVDAVLRQM--T 122
+S+I ++ AL+IF + GF HN TY +IL KL+R + F+ V++++ + +
Sbjct: 53 VSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNS 112
Query: 123 YETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQV 182
Y K E +F++L++++ +E + +F +I P K S+++++T LN+LI++ +
Sbjct: 113 YPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRI-PDFGVKRSVRSLNTLLNVLIQNQRF 171
Query: 183 DLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYS 242
DL K S + + PN N+L+K CK+ +ESA++VL E+ S PNL+TY+
Sbjct: 172 DLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEI-PSMGLVPNLVTYT 230
Query: 243 TLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKN 302
T++ G G A + EEM+ + PDA TY VL+DG+C+ G+ A +M+ M+
Sbjct: 231 TILGGYVARGDMESAKRVLEEMLDRGW-YPDATTYTVLMDGYCKLGRFSEAATVMDDMEK 289
Query: 303 NGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE 362
N PN Y ++ CKE K EA+ +FDEM PD+ +I+ C +VDE
Sbjct: 290 NEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDE 349
Query: 363 ALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLN 422
A L ++M + C D + ++ LC+EG++ EA + ++ + G + +Y ++
Sbjct: 350 ACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDE-FEKGSIPSLLTYNTLIA 408
Query: 423 FSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKP 482
C+KGEL +A L M R P+ T N L+ L K G ++ L ++E+G P
Sbjct: 409 GMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFP 468
Query: 483 ESDSWALLVE 492
++ +L E
Sbjct: 469 NKTTFLILFE 478
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/553 (25%), Positives = 263/553 (47%), Gaps = 64/553 (11%)
Query: 6 FSLRKCCRFSSFSTS--------SSSLPWISPLEVIKANTPKADPPVETSDTCVDARKRS 57
+ C +F FS S S SL P I +P + T +D+
Sbjct: 1 MAFSSCLKFYPFSISQAVTLTHHSFSLNLTPPSSTISFASPHSAALSSTDVKLLDS---- 56
Query: 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAV 117
++ + + AL +FN S++ F+ A Y IL +L R F+ + +
Sbjct: 57 -----------LRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKI 105
Query: 118 LRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLI 177
L M C+ FL L++ ++ L + +L + + KP + LNLL+
Sbjct: 106 LEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV 165
Query: 178 ESNQVDLAQNFLKYSNQHL-RLKPNTCIFNILIKHHCK---------------------- 214
+ N + L + + ++ + +KP+ FN+LIK C+
Sbjct: 166 DGNSLKLVE--ISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPD 223
Query: 215 -------------RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELF 261
G L+ A + ++M + S+ N ++ + ++ G CK GR +A+
Sbjct: 224 EKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSN-VSVNVIVHGFCKEGRVEDALNFI 282
Query: 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321
+EM ++D PD T+N L++G C+ G V A +IM+ M G +P+V+ Y ++++G CK
Sbjct: 283 QEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCK 342
Query: 322 EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVT 381
G+++EA EV D+M P+T+ Y TLI+ C+ +V+EA EL + + +G D+ T
Sbjct: 343 LGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCT 402
Query: 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLML 441
FN ++ GLC A+ + E++ G ++ +Y ++++ C KG+L++A+ +L+ M
Sbjct: 403 FNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQME 462
Query: 442 CRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM-GFKPESDSWALLVELICRGRKL 500
G T N L+ CKA +A +F +E+ G S ++ L++ +C+ R++
Sbjct: 463 LSGCARSVITYNTLIDGFCKANKTREAE-EIFDEMEVHGVSRNSVTYNTLIDGLCKSRRV 521
Query: 501 LFAFELLDELVIK 513
A +L+D+++++
Sbjct: 522 EDAAQLMDQMIME 534
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (549), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 222/388 (57%), Gaps = 5/388 (1%)
Query: 73 KEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGI 132
++P+ AL +F+ E GF H+ +Y++++ KLA+ + F+AVD +LR + Y + E +
Sbjct: 60 EDPEEALSLFHQYQEM-GFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESL 118
Query: 133 FLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYS 192
F+ L++H+ ++ +++FHKI + ++++++T +N+L+++ +++ A++F
Sbjct: 119 FMGLIQHYGKAGSVDKAIDVFHKITSFDCVR-TIQSLNTLINVLVDNGELEKAKSFFD-G 176
Query: 193 NQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252
+ +RL+PN+ FNILIK + E+A +V EM + ++ P+++TY++LI LC+N
Sbjct: 177 AKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQ-PSVVTYNSLIGFLCRND 235
Query: 253 RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNY 312
+A L E+M+ K +I P+A+T+ +L+ G C G+ + AKK+M M+ GC P + NY
Sbjct: 236 DMGKAKSLLEDMIKK-RIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNY 294
Query: 313 TTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKE 372
LM+ K G++ EAK + EMK +KPD + Y L+N C RV EA +L EM+
Sbjct: 295 GILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQM 354
Query: 373 RGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEK 432
+GCK + T+ +++ G CR + L +L + A++ ++ + G L+
Sbjct: 355 KGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDH 414
Query: 433 AIELLRLMLCRGFLPHYATSNELLVRLC 460
A +L +M + LL LC
Sbjct: 415 ACFVLEVMGKKNLSFGSGAWQNLLSDLC 442
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (547), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 125/421 (29%), Positives = 226/421 (53%), Gaps = 11/421 (2%)
Query: 97 TYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKI 156
T+ ++ + ++ ++LR MT C + I+ L+ S C+ L++ ++
Sbjct: 219 TFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM 278
Query: 157 HPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHL--RLKPNTCIFNILIKHHCK 214
+ P + + + L + ++++ A K N+ L P+ + L+ CK
Sbjct: 279 F-LMGCVPDAETFNDVILGLCKFDRINEAA---KMVNRMLIRGFAPDDITYGYLMNGLCK 334
Query: 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA 274
G +++A ++ + K P ++ ++TLI G +GR +A + +MV+ I+PD
Sbjct: 335 IGRVDAAKDLFYRIPK-----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDV 389
Query: 275 LTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDE 334
TYN LI G+ + G V A +++ M+N GC PNV++YT L++GFCK GK+ EA V +E
Sbjct: 390 CTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNE 449
Query: 335 MKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK 394
M LKP+T+G+ LI+ FC+ R+ EA+E+ +EM +GCK D+ TFN ++ GLC +
Sbjct: 450 MSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE 509
Query: 395 IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNE 454
I+ AL +L + +G+ N +Y ++N ++GE+++A +L+ M+ +G T N
Sbjct: 510 IKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNS 569
Query: 455 LLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKE 514
L+ LC+AG + A ++ G P + S +L+ +CR + A E E+V++
Sbjct: 570 LIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRG 629
Query: 515 S 515
S
Sbjct: 630 S 630
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 125/447 (27%), Positives = 240/447 (53%), Gaps = 5/447 (1%)
Query: 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYE 124
+ L+K EK P+ A +F++ + G+ H+ Y IL +L+ + V ++ + +
Sbjct: 13 VLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQ 72
Query: 125 TCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDL 184
CK E + L+++K + S+ ++ L++F ++ I +P++++ +T LN +E+ Q
Sbjct: 73 ECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVK 132
Query: 185 AQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTL 244
++ Y + + PN +N+LIK CK+ E A L M K P++ +YST+
Sbjct: 133 VESLFAYF-ETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFK-PDVFSYSTV 190
Query: 245 IDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIME-FMKNN 303
I+ L K G+ +A+ELF+EM S+ + PD YN+LIDGF + A ++ + ++++
Sbjct: 191 INDLAKAGKLDDALELFDEM-SERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDS 249
Query: 304 GCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEA 363
PNV + +++G K G++ + ++++ MK + D Y++LI+ C AG VD+A
Sbjct: 250 SVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKA 309
Query: 364 LELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNF 423
+ E+ ER D+VT+N +LGG CR GKI+E+L + + + +N SY I++
Sbjct: 310 ESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKG 368
Query: 424 SCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPE 483
+ G++++A + RLM +G+ T + LC G A + + G +
Sbjct: 369 LLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLD 428
Query: 484 SDSWALLVELICRGRKLLFAFELLDEL 510
++A +++ +C+ ++L A L+ E+
Sbjct: 429 VYAYASIIDCLCKKKRLEEASNLVKEM 455
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/419 (29%), Positives = 225/419 (53%), Gaps = 5/419 (1%)
Query: 80 EIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKH 139
++F + + F ++T +++++ A F++V+ +L ++ E E F+ + +
Sbjct: 62 KMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRA 121
Query: 140 FSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKY---SNQHL 196
+ L ++ +++FH++ R K S+K+ ++ LN++I F Y SN ++
Sbjct: 122 YGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNM 181
Query: 197 RLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFRE 256
+ PN FN++IK CK ++ A EV + M + + P+ TY TL+DGLCK R E
Sbjct: 182 NISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERK-CLPDGYTYCTLMDGLCKEERIDE 240
Query: 257 AIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLM 316
A+ L +EM S + P + YNVLIDG C+ G + R K+++ M GC PN Y TL+
Sbjct: 241 AVLLLDEMQS-EGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLI 299
Query: 317 NGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCK 376
+G C +GKL +A + + M + P+ + Y TLIN + R +A+ LL M+ERG
Sbjct: 300 HGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYH 359
Query: 377 ADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIEL 436
+ +++++ GL +EGK EEA+ + K+ G N Y ++++ C++G+ +A E+
Sbjct: 360 LNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEI 419
Query: 437 LRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELIC 495
L M+ G LP+ T + L+ K G+ E+A + + G +++L++ +C
Sbjct: 420 LNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLC 478
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 182/315 (57%), Gaps = 5/315 (1%)
Query: 200 PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIE 259
P+ +N++I +CK G + +A VL M S P+++TY+T++ LC +G+ ++A+E
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLKQAME 225
Query: 260 LFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGF 319
+ + M+ +D PD +TY +LI+ CR V A K+++ M++ GC P+V Y L+NG
Sbjct: 226 VLDRMLQRD-CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGI 284
Query: 320 CKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADI 379
CKEG+L EA + ++M + +P+ I + ++ C GR +A +LL +M +G +
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344
Query: 380 VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRL 439
VTFNI++ LCR+G + A+ +LEK+ G N SY +L+ C++ ++++AIE L
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404
Query: 440 MLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRK 499
M+ RG P T N +L LCK G EDA L L G P ++ +++ + + K
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464
Query: 500 LLFAFELLDELVIKE 514
A +LLDE+ K+
Sbjct: 465 TGKAIKLLDEMRAKD 479
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 222/431 (51%), Gaps = 10/431 (2%)
Query: 90 GFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERV 149
G+ N T +++L+ K+ A++ QM + T + N + H LH +
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQM-FVTGYQPNTVTFNTLIH--GLFLHNKA 202
Query: 150 LEMFHKIHPITRE--KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNI 207
E I + + +P L +N L + DLA N L Q +L+P I+N
Sbjct: 203 SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNT 261
Query: 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267
+I CK ++ A + KEM+ + PN++TYS+LI LC GR+ +A L +M+ +
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIR-PNVVTYSSLISCLCNYGRWSDASRLLSDMIER 320
Query: 268 DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQE 327
+I PD T++ LID F + GK+ A+K+ + M +P++ Y++L+NGFC +L E
Sbjct: 321 -KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379
Query: 328 AKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILG 387
AK++F+ M + PD + Y TLI FC+ RV+E +E+ +EM +RG + VT+NI++
Sbjct: 380 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 439
Query: 388 GLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP 447
GL + G + A + +++ DG+ N +Y +L+ C+ G+LEKA+ + + P
Sbjct: 440 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 499
Query: 448 HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELL 507
T N ++ +CKAG ED L G KP+ ++ ++ CR A L
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALF 559
Query: 508 DELVIKESGTI 518
E+ KE GT+
Sbjct: 560 KEM--KEDGTL 568
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | ||||||
| 255582955 | 521 | pentatricopeptide repeat-containing prot | 0.984 | 0.984 | 0.717 | 0.0 | |
| 359492929 | 513 | PREDICTED: pentatricopeptide repeat-cont | 0.938 | 0.953 | 0.744 | 0.0 | |
| 224063295 | 509 | predicted protein [Populus trichocarpa] | 0.963 | 0.986 | 0.702 | 0.0 | |
| 357465315 | 586 | Pentatricopeptide repeat-containing prot | 0.965 | 0.858 | 0.668 | 0.0 | |
| 147843358 | 714 | hypothetical protein VITISV_030537 [Viti | 0.886 | 0.647 | 0.702 | 0.0 | |
| 449436958 | 504 | PREDICTED: pentatricopeptide repeat-cont | 0.938 | 0.970 | 0.654 | 0.0 | |
| 356518400 | 546 | PREDICTED: pentatricopeptide repeat-cont | 0.952 | 0.908 | 0.636 | 0.0 | |
| 297812025 | 507 | pentatricopeptide repeat-containing prot | 0.930 | 0.956 | 0.577 | 1e-166 | |
| 42573413 | 506 | pentatricopeptide repeat-containing prot | 0.884 | 0.911 | 0.587 | 1e-161 | |
| 242095134 | 499 | hypothetical protein SORBIDRAFT_10g00744 | 0.927 | 0.967 | 0.458 | 1e-111 |
| >gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/513 (71%), Positives = 424/513 (82%)
Query: 4 VRFSLRKCCRFSSFSTSSSSLPWISPLEVIKANTPKADPPVETSDTCVDARKRSRFISHG 63
+RF K S+ S +S S PWISPL+ KA D P ETS T V+ ++ +FISH
Sbjct: 1 MRFFCHKHRLLSTSSATSYSFPWISPLQFSKAAPLVPDSPTETSSTLVETGRKCKFISHE 60
Query: 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTY 123
+AI+LIK EK+PQ ALEIFN V EQKGFNHN+ATY+T++ KLA+ KKF AVDA+L QMTY
Sbjct: 61 SAINLIKREKDPQHALEIFNMVGEQKGFNHNHATYSTLIHKLAQTKKFHAVDALLHQMTY 120
Query: 124 ETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVD 183
ETCKFHE IFLNLMKHF SLHERVLEMF+ I PI REKPSLKAISTCLN+L+ES Q+D
Sbjct: 121 ETCKFHENIFLNLMKHFYKSSLHERVLEMFYAIQPIVREKPSLKAISTCLNILVESKQID 180
Query: 184 LAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYST 243
LAQ L Y N+HL+++PNTCIFNIL+KHHCK G LESA EV+ EMKKS+ SYPN+ITYST
Sbjct: 181 LAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESALEVMHEMKKSRRSYPNVITYST 240
Query: 244 LIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303
LIDGLC NGR +EAIELFEEMVSKDQILPDALTY+VLI GFC GGK DRA+KIMEFM++N
Sbjct: 241 LIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSN 300
Query: 304 GCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEA 363
GC+PNVFNY+ LMNGFCKEG+L+EAKEVFDEMK+ LKPDT+GYTTLINCFC GR+DEA
Sbjct: 301 GCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEA 360
Query: 364 LELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNF 423
+ELLKEM E CKAD VTFN++L GLCREG+ +EAL MLE L Y+G+YLNK SYRIVLNF
Sbjct: 361 MELLKEMTEMKCKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNF 420
Query: 424 SCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPE 483
CQKGELEK+ LL LML RGF+PHYATSNELLV LC+AGM ++A ALFGL +MGF PE
Sbjct: 421 LCQKGELEKSCALLGLMLSRGFVPHYATSNELLVCLCEAGMVDNAVTALFGLTQMGFTPE 480
Query: 484 SDSWALLVELICRGRKLLFAFELLDELVIKESG 516
SWA L+E ICR RKLLF FEL+DELV KESG
Sbjct: 481 PKSWAHLIEYICRERKLLFVFELVDELVEKESG 513
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein At5g18475-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/490 (74%), Positives = 423/490 (86%), Gaps = 1/490 (0%)
Query: 26 WISPLEVIKANTPKADPP-VETSDTCVDARKRSRFISHGAAISLIKCEKEPQCALEIFNT 84
WISPL+ + A +PK DPP E + T V+ RK+ +FISH +AI+LIK E +PQ ALEIFN
Sbjct: 23 WISPLQYLNATSPKPDPPATEATTTMVEPRKKPKFISHESAINLIKRETDPQRALEIFNR 82
Query: 85 VSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144
V+EQ+GF+HNNATYATIL KLA+ KKF+A+DAVL QMTYETCKFHEGIFLNLMKHFS S
Sbjct: 83 VAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEGIFLNLMKHFSKLS 142
Query: 145 LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCI 204
LHERV+EMF I PI REKPSLKAISTCLNLL+ESNQVDL + FL S + L L+PNTCI
Sbjct: 143 LHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRKFLLNSKKSLNLEPNTCI 202
Query: 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264
FNIL+KHHCK G ++SAFEV++EMKKS +SYPNLITYSTLI+GLC +GR +EAIELFEEM
Sbjct: 203 FNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEM 262
Query: 265 VSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK 324
VSKDQILPDALTYN LI+GFC G KVDRA KIMEFMK NGCNPNVFNY+ LMNGFCKEG+
Sbjct: 263 VSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGR 322
Query: 325 LQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI 384
L+EAKEVFDEMK+ LKPDT+GYTTLIN FCRAGRVDEA+ELLK+M+E C+AD VTFN+
Sbjct: 323 LEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNV 382
Query: 385 ILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444
ILGGLCREG+ EEA GMLE+L Y+G+YLNKASYRIVLN C++GEL+KA +L+ LML RG
Sbjct: 383 ILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRG 442
Query: 445 FLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAF 504
LPH+ATSNELLV LC+AG DA +AL GL+E+GFKPE +SWALLVELICR RKLL AF
Sbjct: 443 VLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRERKLLPAF 502
Query: 505 ELLDELVIKE 514
ELLD+LVI+E
Sbjct: 503 ELLDDLVIQE 512
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063295|ref|XP_002301082.1| predicted protein [Populus trichocarpa] gi|222842808|gb|EEE80355.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/514 (70%), Positives = 421/514 (81%), Gaps = 12/514 (2%)
Query: 1 MNSVRFSLRKCCRFSSFSTSSSSLPWISPLEVIKANTPKADPPVETSDTCVDARKRSRFI 60
MNSV+ + C + SFS SLPWISPL + TPK DPP T ++ R++ +FI
Sbjct: 1 MNSVKVVI--CHKHRSFS----SLPWISPLHFL---TPKLDPP---PKTLLEPRRKPKFI 48
Query: 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQ 120
SH A++LIK E++PQ ALEIFN V EQKGFNHN+ATY+TI+DKLAR KKF+AVDA+LRQ
Sbjct: 49 SHETAVNLIKHERDPQHALEIFNLVVEQKGFNHNHATYSTIIDKLARAKKFQAVDALLRQ 108
Query: 121 MTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESN 180
M YETCKFHE +FLNLMK+F+ S ERV+EMF+KI PI REKPSLKAISTCLNLL+ES
Sbjct: 109 MMYETCKFHESLFLNLMKYFAKSSEFERVVEMFNKIQPIVREKPSLKAISTCLNLLVESK 168
Query: 181 QVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLIT 240
QVDL + FL N+ LKPNTCIFNI IK+HCK G LESAF V+KEMKKS +SYPNLIT
Sbjct: 169 QVDLLRGFLLDLNKDHMLKPNTCIFNIFIKYHCKSGDLESAFAVVKEMKKSSISYPNLIT 228
Query: 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300
YSTL+DGLC++GR +EAIELFEEMVSKDQILPDALTYNVLI+GF GKVDRAKKIMEFM
Sbjct: 229 YSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFM 288
Query: 301 KNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRV 360
K+NGC+PNVFNY+ LM+GFCKEG+L+EA + F+EMK F LK DT+GYT LIN FCR GR+
Sbjct: 289 KSNGCSPNVFNYSALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRI 348
Query: 361 DEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIV 420
DEA+ LL+EMKE CKADIVT N++L G C EG+ EEALGML +L +GIYLNKASYRIV
Sbjct: 349 DEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIYLNKASYRIV 408
Query: 421 LNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGF 480
LN CQKG+L+KA+ELL L L RGF+PH+ATSNELLV LCKAGMA+DA +AL+GL EMGF
Sbjct: 409 LNSLCQKGDLDKALELLGLTLSRGFVPHHATSNELLVGLCKAGMADDAVVALYGLAEMGF 468
Query: 481 KPESDSWALLVELICRGRKLLFAFELLDELVIKE 514
KPE DSWALLVE +CR RKLL AFELLDEL E
Sbjct: 469 KPEQDSWALLVEFVCRERKLLLAFELLDELTANE 502
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/507 (66%), Positives = 402/507 (79%), Gaps = 4/507 (0%)
Query: 11 CCRFSS--FSTSSSSLPWISPLEVIKANTPKADPPVETSDTCVDARKRSRFISHGAAISL 68
CCR S+SSLPWISPL K PK DPP E + RK+S++I+H AI+L
Sbjct: 82 CCRHMQPYRVPSASSLPWISPLNFTKPLEPKLDPPPEI--VVAETRKKSKYITHDVAINL 139
Query: 69 IKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKF 128
IK EK+PQ AL+IFN VSEQKGFNHNNATYATIL KLA++KKF+AVD VL QMTYE CKF
Sbjct: 140 IKREKDPQHALKIFNMVSEQKGFNHNNATYATILQKLAQFKKFQAVDRVLHQMTYEACKF 199
Query: 129 HEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNF 188
HEG+F+NLMKH+S C HE+V + F I I REKPS KAIS+CLNLL++SNQVDL +
Sbjct: 200 HEGVFINLMKHYSKCGFHEKVFDAFLSIQTIVREKPSPKAISSCLNLLVDSNQVDLVRKL 259
Query: 189 LKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL 248
L Y+ + L KPN CIFNIL+K+HC+RG ++SAFEV+KEM+ S+ SYPN+ITYSTL+DGL
Sbjct: 260 LLYAKRSLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGL 319
Query: 249 CKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN 308
C+NGR +EA ELFEEMVSKDQI+PD LTYNVLI+GFCR GK DRA+ ++EFMKNNGC PN
Sbjct: 320 CRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPN 379
Query: 309 VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLK 368
VFNY+ L++G CK GKLQ+AK V EMK+ LKPD I YT+LIN F R G++DEA+ELL
Sbjct: 380 VFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLT 439
Query: 369 EMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKG 428
EMKE C+AD VTFN+ILGGLCREG+ +EAL M+EKL G+YLNK SYRIVLN Q
Sbjct: 440 EMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNC 499
Query: 429 ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWA 488
EL KA +LL LML RGF+PHYATSNELLVRLCK GMA DAA ALF LV+MGF+P+ DSW
Sbjct: 500 ELRKANKLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMGFQPQHDSWE 559
Query: 489 LLVELICRGRKLLFAFELLDELVIKES 515
LL++LICR RKLL+ FELLDELV S
Sbjct: 560 LLIDLICRDRKLLYVFELLDELVTSNS 586
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/490 (70%), Positives = 398/490 (81%), Gaps = 28/490 (5%)
Query: 26 WISPLEVIKANTPKADPP-VETSDTCVDARKRSRFISHGAAISLIKCEKEPQCALEIFNT 84
WISPL+ + A +PK DPP E + T V+ RK+ +FISH +AI+LIK E +PQ ALEIFN
Sbjct: 93 WISPLQYLNATSPKPDPPATEATTTMVEPRKKPKFISHESAINLIKRETDPQRALEIFNR 152
Query: 85 VSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144
V+EQ+GF+HNNATYATIL KLA+ KKF+A+DAVL QMTYETCKFHEGIFLNLMKHFS S
Sbjct: 153 VAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEGIFLNLMKHFSKLS 212
Query: 145 LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCI 204
LHERV+EMF I PI REKPSLKAISTCLNLL+ESNQ +
Sbjct: 213 LHERVVEMFDAIXPIVREKPSLKAISTCLNLLVESNQSSIT------------------- 253
Query: 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264
K G ++SAFEV++EMKKS +SYPNLITYSTLI+GLC +GR +EAIELFEEM
Sbjct: 254 --------AKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEM 305
Query: 265 VSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK 324
VSKDQILPDALTYN LI+GFC G KVDRA KIMEFMK NGCNPNVFNY+ LMNGFCKEG+
Sbjct: 306 VSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGR 365
Query: 325 LQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI 384
L+EAKEVFDEMK+ LKPDT+GYTTLIN FCRAGRVDEA+ELLK+M E C+AD VTFN+
Sbjct: 366 LEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNV 425
Query: 385 ILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444
ILGGLCREG+ EEA GMLE+L Y+G+YLNKASYRIVLN C++GEL+KA +L+ LML RG
Sbjct: 426 ILGGLCREGRFEEAXGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRG 485
Query: 445 FLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAF 504
LPH+ATSNELLV LC+AG DA +AL GL+E+GFKPE +SWALLVELICR RKLL AF
Sbjct: 486 VLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRERKLLPAF 545
Query: 505 ELLDELVIKE 514
ELLD+LVI+E
Sbjct: 546 ELLDDLVIQE 555
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18475-like [Cucumis sativus] gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18475-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/492 (65%), Positives = 402/492 (81%), Gaps = 3/492 (0%)
Query: 23 SLPWISPLEVIKANTPKADPPVETSDTCVDARKRSRFISHGAAISLIKCEKEPQCALEIF 82
++ W+S + K+NT + + + + +S +ISH AI LIK E++PQ AL+IF
Sbjct: 14 AIGWVSKTVISKSNTS---IRLFATSKEIQKKSKSSYISHETAIKLIKNERDPQHALDIF 70
Query: 83 NTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN 142
N VSEQ+GFNHN+ATYA+I+ LA+YKKF+A+D VL QMTY+TCK HEGIFLNLMKHFS
Sbjct: 71 NMVSEQQGFNHNHATYASIIQNLAKYKKFQAIDGVLHQMTYDTCKVHEGIFLNLMKHFSK 130
Query: 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNT 202
S+HERVL+MF+ I I REKPSLKAISTCLNLL+ES++VDLA+ L + L L+PNT
Sbjct: 131 SSMHERVLDMFYAIKSIVREKPSLKAISTCLNLLVESDRVDLARKLLVNARSKLNLRPNT 190
Query: 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFE 262
CIFNIL+KHHC+ G L++AFEV+KEMK +++SYPNL+TYSTLI GLC+NG+ +EAIE FE
Sbjct: 191 CIFNILVKHHCRNGDLQAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFE 250
Query: 263 EMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE 322
EMVSKD ILPDALTYN+LI+GFC+ GKVDRA+ I+EFMK+NGC+PNVFNY+ LMNG+CKE
Sbjct: 251 EMVSKDNILPDALTYNILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKE 310
Query: 323 GKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTF 382
G+LQEAKEVF+E+K+ +KPDTI YTTLINC CR GRVDEA ELL++MK++ C+AD VTF
Sbjct: 311 GRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTF 370
Query: 383 NIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC 442
N++LGGLCREG+ +EAL M++KL ++G YLNK SYRIVLNF QKGEL KA ELL LML
Sbjct: 371 NVMLGGLCREGRFDEALDMVQKLPFEGFYLNKGSYRIVLNFLTQKGELRKATELLGLMLN 430
Query: 443 RGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLF 502
RGF+PH+ATSN LL+ LC GM +DA +L GL+EMGFKPE +SW LV+LICR RK+L
Sbjct: 431 RGFVPHHATSNTLLLLLCNNGMVKDAVESLLGLLEMGFKPEHESWFTLVDLICRERKMLP 490
Query: 503 AFELLDELVIKE 514
FELLD LV +E
Sbjct: 491 VFELLDVLVTQE 502
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18475-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/509 (63%), Positives = 392/509 (77%), Gaps = 13/509 (2%)
Query: 12 CRFSSF-----STSSSSLPWISPLEVIKANTPKADPPVETSDTCVDARKRSRFISHGAAI 66
CR F S S LPWISPL+ KA+ RKR + ISH +AI
Sbjct: 46 CRIMKFCAMYRSRHGSWLPWISPLKFTKADP-------PPEPLPSPPRKR-KHISHDSAI 97
Query: 67 SLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETC 126
LIK EK+PQ AL IFN VSEQ GF HNNATYATILDKLAR F AVD VL QMTYETC
Sbjct: 98 DLIKREKDPQHALNIFNMVSEQNGFQHNNATYATILDKLARCNNFHAVDRVLHQMTYETC 157
Query: 127 KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQ 186
KFHEGIF+NLMKHFS SLHE++L + I PI REKPS KA+STCLNLL++SN+VDLA+
Sbjct: 158 KFHEGIFVNLMKHFSKSSLHEKLLHAYFSIQPIVREKPSPKALSTCLNLLLDSNRVDLAR 217
Query: 187 NFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLID 246
L ++ + L KPN C+FNIL+K+HCK G L+SAFE+++EM+ S+ SYPNL+TYSTL+D
Sbjct: 218 KLLLHAKRDLTRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMD 277
Query: 247 GLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN 306
GLC+NGR +EA +LFEEMVS+D I+PD LTYNVLI+GFCRGGK DRA+ +++FMK+NGC
Sbjct: 278 GLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCY 337
Query: 307 PNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALEL 366
PNV+NY+ L++G CK GKL++AK V E+K LKPD + YT+LIN CR G+ DEA+EL
Sbjct: 338 PNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIEL 397
Query: 367 LKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ 426
L+EMKE GC+AD VTFN++LGGLCREGK EEAL M+EKL G+YLNK SYRIVLN Q
Sbjct: 398 LEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQ 457
Query: 427 KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDS 486
K EL++A ELL LML RGF PHYATSNELLV LCKAGM +DAA+ALF LVEMGF+P ++
Sbjct: 458 KCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGLET 517
Query: 487 WALLVELICRGRKLLFAFELLDELVIKES 515
W +L+ LICR RKLL+ FELLDELV+ +
Sbjct: 518 WEVLIGLICRERKLLYVFELLDELVVTNT 546
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 280/485 (57%), Positives = 367/485 (75%)
Query: 26 WISPLEVIKANTPKADPPVETSDTCVDARKRSRFISHGAAISLIKCEKEPQCALEIFNTV 85
W+SP+ + K DPP E+S + ++ +++FISH + +SL+K E++PQ AL+IFN
Sbjct: 21 WVSPICFSEKKKKKLDPPPESSISTMETNPKTKFISHESTVSLMKRERDPQRALDIFNKA 80
Query: 86 SEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145
S+QKGFNHNNATY+ +LD L R+KKF AVDA+L QM YETC+F E +FLNLM+HFS L
Sbjct: 81 SQQKGFNHNNATYSVLLDNLVRHKKFLAVDAILHQMKYETCRFQESLFLNLMRHFSRFDL 140
Query: 146 HERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIF 205
H++V+EMF+ I I R KPSL AISTCLNLLI+S +VDLA+ L Y+ +L L+PNTCIF
Sbjct: 141 HDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVDLARKLLLYAKHNLALQPNTCIF 200
Query: 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMV 265
NIL+KHHCK G ++SAF V++EMK+S +SYPN ITYSTL+D L R +EA+ELFE+M+
Sbjct: 201 NILVKHHCKNGDIDSAFRVVEEMKRSGISYPNSITYSTLMDCLFAQSRSKEAVELFEDMI 260
Query: 266 SKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKL 325
SK I PD + +NV+I+GFCR G+V+RAK I++FMK NGCNPNV+NY+ LMNGFCKEGK+
Sbjct: 261 SKRGISPDPVIFNVMINGFCRSGEVERAKMILDFMKKNGCNPNVYNYSALMNGFCKEGKI 320
Query: 326 QEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNII 385
QEAK+VFDE+K LK DT+GYTTL+NC CR G +DEA++LL EMK C+AD +T+N+I
Sbjct: 321 QEAKQVFDEVKKTGLKLDTVGYTTLMNCLCRNGEIDEAMKLLGEMKASRCRADALTYNVI 380
Query: 386 LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGF 445
L GL EG+ EEAL ML++ +G++LNK SYRI+LN C GELEKA++ L +M RG
Sbjct: 381 LRGLSSEGRSEEALQMLDQWGCEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSKRGI 440
Query: 446 LPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFE 505
PH+AT NEL+VRLC++G E L G + +G P SW +VE IC+ RKL+ FE
Sbjct: 441 WPHHATWNELVVRLCESGNTEIGVRVLIGFLGIGLIPAPKSWGAVVESICKERKLVHVFE 500
Query: 506 LLDEL 510
LLD L
Sbjct: 501 LLDSL 505
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475 gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana] gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 271/461 (58%), Positives = 354/461 (76%)
Query: 51 VDARKRSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKK 110
V+ +++FISH +A+SL+K E++PQ L+IFN S+QKGFNHNNATY+ +LD L R+KK
Sbjct: 45 VETNPKTKFISHESAVSLMKRERDPQGVLDIFNKASQQKGFNHNNATYSVLLDNLVRHKK 104
Query: 111 FEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIS 170
F AVDA+L QM YETC+F E +FLNLM+HFS LH++V+EMF+ I I R KPSL AIS
Sbjct: 105 FLAVDAILHQMKYETCRFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAIS 164
Query: 171 TCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKK 230
TCLNLLI+S +V+L++ L Y+ +L L+PNTCIFNIL+KHHCK G + AF V++EMK+
Sbjct: 165 TCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKR 224
Query: 231 SQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV 290
S +SYPN ITYSTL+D L + R +EA+ELFE+M+SK+ I PD +T+NV+I+GFCR G+V
Sbjct: 225 SGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEV 284
Query: 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTL 350
+RAKKI++FMK NGCNPNV+NY+ LMNGFCK GK+QEAK+ FDE+K LK DT+GYTTL
Sbjct: 285 ERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTL 344
Query: 351 INCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI 410
+NCFCR G DEA++LL EMK C+AD +T+N+IL GL EG+ EEAL ML++ +G+
Sbjct: 345 MNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGV 404
Query: 411 YLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAI 470
+LNK SYRI+LN C GELEKA++ L +M RG PH+AT NEL+VRLC++G E
Sbjct: 405 HLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYTEIGVR 464
Query: 471 ALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELV 511
L G + +G P SW +VE IC+ RKL+ FELLD LV
Sbjct: 465 VLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLV 505
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242095134|ref|XP_002438057.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor] gi|241916280|gb|EER89424.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/497 (45%), Positives = 320/497 (64%), Gaps = 14/497 (2%)
Query: 23 SLPWISPLEVIKANTPKADPPVETSDTCVDARKRSRFISHGAAISLIKCEKEPQCALEIF 82
+LPWISPL+ ++ A P + R++ H LI Q AL++F
Sbjct: 6 ALPWISPLQY-RSPARGAPPSPPPPAPPPPPTRPPRYLHHPELARLIASSPSAQRALDLF 64
Query: 83 NTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN 142
N S Q+GF+H AT++ +L +LAR + A AVLR+ E C+F E FL L++
Sbjct: 65 NAASSQRGFSHTPATFSALLVRLARARLPRAAAAVLRRTASEPCRFQEPQFLPLVRLLPP 124
Query: 143 CSLHERVLEMFHKIHPITR-EKPSLKAISTCLNLLIESNQV-----DLAQNFLKYSNQHL 196
+ L + + + R + S KA++ CL+ L+ S +L + N++L
Sbjct: 125 ----DHALALLRFLPALLRTSRVSHKALAVCLDRLVSSRGCHGVLDELLSDLRDPRNKYL 180
Query: 197 RLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMS--YPNLITYSTLIDGLCKNGRF 254
+PNTC++NILIKH + G LE+AF+VL EM++ + PNL+TYSTLI GLC+ G+
Sbjct: 181 P-RPNTCVYNILIKHFVRIGELETAFKVLDEMREYTCADVKPNLVTYSTLIAGLCRGGKM 239
Query: 255 REAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTT 314
EA ELFEEM+ KD+I+PD L YNV+IDGFCR G+VD+A+ I FMK N C PN FNY T
Sbjct: 240 MEAFELFEEMIEKDRIVPDQLLYNVIIDGFCRLGQVDKARAIFGFMKKNDCEPNAFNYAT 299
Query: 315 LMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERG 374
L+NG CK+ ++ A+ VF+EM+N ++PD + YT LI C CR G VDEA+ L+ EMK++G
Sbjct: 300 LINGHCKKADIEAARSVFEEMRNAGVEPDAVSYTALIGCLCRHGSVDEAINLVLEMKQKG 359
Query: 375 CKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAI 434
C+AD+VT+N+++ GLCR+G+ EA+ +LE + +G+ LN ASYRI++N C +GE++KA+
Sbjct: 360 CRADVVTYNLVIEGLCRDGRTVEAMDLLESVPLEGVKLNVASYRILMNCLCSRGEMDKAV 419
Query: 435 ELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELI 494
LL LML RGFLPHYA SN LL+ LC AG DA +AL+GL + GF PE+ W LVE +
Sbjct: 420 GLLGLMLGRGFLPHYAASNNLLIGLCDAGRIADATMALYGLADAGFMPEARCWERLVETM 479
Query: 495 CRGRKLLFAFELLDELV 511
CR RK + ELLD LV
Sbjct: 480 CRERKQRRSTELLDVLV 496
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 521 | ||||||
| TAIR|locus:1006230454 | 506 | AT5G18475 "AT5G18475" [Arabido | 0.930 | 0.958 | 0.574 | 2.8e-153 | |
| TAIR|locus:2161408 | 472 | AT5G46100 "AT5G46100" [Arabido | 0.831 | 0.917 | 0.325 | 1.2e-58 | |
| TAIR|locus:2171352 | 535 | AT5G16420 "AT5G16420" [Arabido | 0.811 | 0.790 | 0.311 | 5.3e-56 | |
| TAIR|locus:2026560 | 459 | AT1G07740 "AT1G07740" [Arabido | 0.696 | 0.790 | 0.317 | 6.1e-55 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.896 | 0.639 | 0.281 | 2.6e-54 | |
| TAIR|locus:2119747 | 660 | EMB1025 "embryo defective 1025 | 0.833 | 0.657 | 0.287 | 7e-54 | |
| TAIR|locus:2095309 | 687 | AT3G09060 "AT3G09060" [Arabido | 0.846 | 0.641 | 0.280 | 1.5e-53 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.808 | 0.668 | 0.308 | 1.7e-52 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.595 | 0.518 | 0.342 | 5.6e-52 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.888 | 0.718 | 0.294 | 1.9e-51 |
| TAIR|locus:1006230454 AT5G18475 "AT5G18475" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1495 (531.3 bits), Expect = 2.8e-153, P = 2.8e-153
Identities = 279/486 (57%), Positives = 366/486 (75%)
Query: 26 WISPLEVIKANTPKADPPVETSDTCVDARKRSRFISHGAAISLIKCEKEPQCALEIFNTV 85
W+SP+ K PP E+S + V+ +++FISH +A+SL+K E++PQ L+IFN
Sbjct: 21 WVSPI-CFSEKKKKPSPPPESSISPVETNPKTKFISHESAVSLMKRERDPQGVLDIFNKA 79
Query: 86 SEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145
S+QKGFNHNNATY+ +LD L R+KKF AVDA+L QM YETC+F E +FLNLM+HFS L
Sbjct: 80 SQQKGFNHNNATYSVLLDNLVRHKKFLAVDAILHQMKYETCRFQESLFLNLMRHFSRSDL 139
Query: 146 HERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIF 205
H++V+EMF+ I I R KPSL AISTCLNLLI+S +V+L++ L Y+ +L L+PNTCIF
Sbjct: 140 HDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIF 199
Query: 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMV 265
NIL+KHHCK G + AF V++EMK+S +SYPN ITYSTL+D L + R +EA+ELFE+M+
Sbjct: 200 NILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMI 259
Query: 266 SKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKL 325
SK+ I PD +T+NV+I+GFCR G+V+RAKKI++FMK NGCNPNV+NY+ LMNGFCK GK+
Sbjct: 260 SKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKI 319
Query: 326 QEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNII 385
QEAK+ FDE+K LK DT+GYTTL+NCFCR G DEA++LL EMK C+AD +T+N+I
Sbjct: 320 QEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVI 379
Query: 386 LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGF 445
L GL EG+ EEAL ML++ +G++LNK SYRI+LN C GELEKA++ L +M RG
Sbjct: 380 LRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGI 439
Query: 446 LPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFE 505
PH+AT NEL+VRLC++G E L G + +G P SW +VE IC+ RKL+ FE
Sbjct: 440 WPHHATWNELVVRLCESGYTEIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFE 499
Query: 506 LLDELV 511
LLD LV
Sbjct: 500 LLDSLV 505
|
|
| TAIR|locus:2161408 AT5G46100 "AT5G46100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 145/446 (32%), Positives = 235/446 (52%)
Query: 55 KRSRFISHGAAISLIKCEKEPQCALEIFNTVSEQ--KGFNHNNATYATILDKLARYKKFE 112
K S+ I+ I L++ EK+ + ++ +F++ + + G+ H+ +++ ++ +L KF+
Sbjct: 9 KWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLRLVSANKFK 68
Query: 113 AVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTC 172
A + ++ +M E C E I L++ + + L +FHK+ + PS KA T
Sbjct: 69 AAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCD-PSQKAYVTV 127
Query: 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR-GTLESAFEVLKEMKKS 231
L +L+E NQ++LA F K + + + L P N+LIK C+ GT+++ ++ EM K
Sbjct: 128 LAILVEENQLNLAFKFYK-NMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKR 186
Query: 232 QMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVD 291
P+ TY TLI GLC+ GR EA +LF EMV KD P +TY LI+G C VD
Sbjct: 187 GCD-PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD-CAPTVVTYTSLINGLCGSKNVD 244
Query: 292 RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLI 351
A + +E MK+ G PNVF Y++LM+G CK+G+ +A E+F+ M +P+ + YTTLI
Sbjct: 245 EAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304
Query: 352 NCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIY 411
C+ ++ EA+ELL M +G K D + ++ G C K EA L+++ GI
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGIT 364
Query: 412 LNKASYRIVLNFSCQ--KGEL----EKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465
N+ ++ I + S + +G +A L M RG T L+ LCK G
Sbjct: 365 PNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEF 424
Query: 466 EDAAIALFGLVEMGFKPESDSWALLV 491
+ A + +V G P +W LL+
Sbjct: 425 QKAVQLVDEIVTDGCIPSKGTWKLLI 450
|
|
| TAIR|locus:2171352 AT5G16420 "AT5G16420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 134/430 (31%), Positives = 231/430 (53%)
Query: 66 ISLIKCEKEPQCALEIFNTVSEQK-GFNHNNATYATILDKLARYKKFEAVDAVLRQM--T 122
+S+I ++ AL+IF + GF HN TY +IL KL+R + F+ V++++ + +
Sbjct: 53 VSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNS 112
Query: 123 YETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQV 182
Y K E +F++L++++ +E + +F +I P K S+++++T LN+LI++ +
Sbjct: 113 YPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRI-PDFGVKRSVRSLNTLLNVLIQNQRF 171
Query: 183 DLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYS 242
DL K S + + PN N+L+K CK+ +ESA++VL E+ + PNL+TY+
Sbjct: 172 DLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGL-VPNLVTYT 230
Query: 243 TLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKN 302
T++ G G A + EEM+ + PDA TY VL+DG+C+ G+ A +M+ M+
Sbjct: 231 TILGGYVARGDMESAKRVLEEMLDRGWY-PDATTYTVLMDGYCKLGRFSEAATVMDDMEK 289
Query: 303 NGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE 362
N PN Y ++ CKE K EA+ +FDEM PD+ +I+ C +VDE
Sbjct: 290 NEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDE 349
Query: 363 ALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLN 422
A L ++M + C D + ++ LC+EG++ EA + ++ + G + +Y ++
Sbjct: 350 ACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDE-FEKGSIPSLLTYNTLIA 408
Query: 423 FSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKP 482
C+KGEL +A L M R P+ T N L+ L K G ++ L ++E+G P
Sbjct: 409 GMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFP 468
Query: 483 ESDSWALLVE 492
++ +L E
Sbjct: 469 NKTTFLILFE 478
|
|
| TAIR|locus:2026560 AT1G07740 "AT1G07740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 117/368 (31%), Positives = 217/368 (58%)
Query: 73 KEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGI 132
++P+ AL +F+ E GF H+ +Y++++ KLA+ + F+AVD +LR + Y + E +
Sbjct: 60 EDPEEALSLFHQYQEM-GFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESL 118
Query: 133 FLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYS 192
F+ L++H+ ++ +++FHKI + ++++++T +N+L+++ +++ A++F +
Sbjct: 119 FMGLIQHYGKAGSVDKAIDVFHKITSFDCVR-TIQSLNTLINVLVDNGELEKAKSFFDGA 177
Query: 193 NQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252
+RL+PN+ FNILIK + E+A +V EM + ++ P+++TY++LI LC+N
Sbjct: 178 KD-MRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQ-PSVVTYNSLIGFLCRND 235
Query: 253 RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNY 312
+A L E+M+ K +I P+A+T+ +L+ G C G+ + AKK+M M+ GC P + NY
Sbjct: 236 DMGKAKSLLEDMIKK-RIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNY 294
Query: 313 TTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKE 372
LM+ K G++ EAK + EMK +KPD + Y L+N C RV EA +L EM+
Sbjct: 295 GILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQM 354
Query: 373 RGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEK 432
+GCK + T+ +++ G CR + L +L + A++ ++ + G L+
Sbjct: 355 KGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDH 414
Query: 433 AIELLRLM 440
A +L +M
Sbjct: 415 ACFVLEVM 422
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 136/483 (28%), Positives = 251/483 (51%)
Query: 39 KADPPVETSDTCVDARK----RSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHN 94
KA P +T+ ++ R F S+ + ++ + A +F + +K
Sbjct: 158 KAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRK-IPPT 216
Query: 95 NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFH 154
T+ ++ + ++ ++LR MT C + I+ L+ S C+ L++
Sbjct: 217 LFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLE 276
Query: 155 KIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLR-LKPNTCIFNILIKHHC 213
++ + P + + + L + ++++ A + + +R P+ + L+ C
Sbjct: 277 EMF-LMGCVPDAETFNDVILGLCKFDRINEAAKMV--NRMLIRGFAPDDITYGYLMNGLC 333
Query: 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD 273
K G +++A ++ + K P ++ ++TLI G +GR +A + +MV+ I+PD
Sbjct: 334 KIGRVDAAKDLFYRIPK-----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD 388
Query: 274 ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFD 333
TYN LI G+ + G V A +++ M+N GC PNV++YT L++GFCK GK+ EA V +
Sbjct: 389 VCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLN 448
Query: 334 EMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREG 393
EM LKP+T+G+ LI+ FC+ R+ EA+E+ +EM +GCK D+ TFN ++ GLC
Sbjct: 449 EMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVD 508
Query: 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSN 453
+I+ AL +L + +G+ N +Y ++N ++GE+++A +L+ M+ +G T N
Sbjct: 509 EIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYN 568
Query: 454 ELLVRLCKAGMAEDAAIALFG-LVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI 512
L+ LC+AG D A +LF ++ G P + S +L+ +CR + A E E+V+
Sbjct: 569 SLIKGLCRAGEV-DKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVL 627
Query: 513 KES 515
+ S
Sbjct: 628 RGS 630
|
|
| TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 126/439 (28%), Positives = 234/439 (53%)
Query: 60 ISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLR 119
+S ++ +++ E + ++F + + F ++T +++++ A F++V+ +L
Sbjct: 42 VSPNPSMEVVENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLS 101
Query: 120 QMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIES 179
++ E E F+ + + + L ++ +++FH++ R K S+K+ ++ LN++I
Sbjct: 102 RIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINE 161
Query: 180 NQVDLAQNFLKY---SNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP 236
F Y SN ++ + PN FN++IK CK ++ A EV + M + + P
Sbjct: 162 GLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKC-LP 220
Query: 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKI 296
+ TY TL+DGLCK R EA+ L +EM S+ P + YNVLIDG C+ G + R K+
Sbjct: 221 DGYTYCTLMDGLCKEERIDEAVLLLDEMQSEG-CSPSPVIYNVLIDGLCKKGDLTRVTKL 279
Query: 297 MEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356
++ M GC PN Y TL++G C +GKL +A + + M + P+ + Y TLIN +
Sbjct: 280 VDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVK 339
Query: 357 AGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKAS 416
R +A+ LL M+ERG + +++++ GL +EGK EEA+ + K+ G N
Sbjct: 340 QRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVV 399
Query: 417 YRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV 476
Y ++++ C++G+ +A E+L M+ G LP+ T + L+ K G+ E+A +
Sbjct: 400 YSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMD 459
Query: 477 EMGFKPESDSWALLVELIC 495
+ G +++L++ +C
Sbjct: 460 KTGCSRNKFCYSVLIDGLC 478
|
|
| TAIR|locus:2095309 AT3G09060 "AT3G09060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 125/446 (28%), Positives = 240/446 (53%)
Query: 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYET 125
+ L+K EK P+ A +F++ + G+ H+ Y IL +L+ + V ++ + +
Sbjct: 14 LKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQE 73
Query: 126 CKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLA 185
CK E + L+++K + S+ ++ L++F ++ I +P++++ +T LN +E+ Q
Sbjct: 74 CKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKV 133
Query: 186 QNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLI 245
++ Y + + PN +N+LIK CK+ E A L M K P++ +YST+I
Sbjct: 134 ESLFAYF-ETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFK-PDVFSYSTVI 191
Query: 246 DGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIME-FMKNNG 304
+ L K G+ +A+ELF+EM S+ + PD YN+LIDGF + A ++ + ++++
Sbjct: 192 NDLAKAGKLDDALELFDEM-SERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSS 250
Query: 305 CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEAL 364
PNV + +++G K G++ + ++++ MK + D Y++LI+ C AG VD+A
Sbjct: 251 VYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAE 310
Query: 365 ELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS 424
+ E+ ER D+VT+N +LGG CR GKI+E+L + + + +N SY I++
Sbjct: 311 SVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNS-VNIVSYNILIKGL 369
Query: 425 CQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES 484
+ G++++A + RLM +G+ T + LC G A + + G +
Sbjct: 370 LENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDV 429
Query: 485 DSWALLVELICRGRKLLFAFELLDEL 510
++A +++ +C+ ++L A L+ E+
Sbjct: 430 YAYASIIDCLCKKKRLEEASNLVKEM 455
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 133/431 (30%), Positives = 222/431 (51%)
Query: 90 GFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERV 149
G+ N T +++L+ K+ A++ QM + T + N + H LH +
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQM-FVTGYQPNTVTFNTLIH--GLFLHNKA 202
Query: 150 LEMFHKIHPITRE--KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNI 207
E I + + +P L +N L + DLA N L Q +L+P I+N
Sbjct: 203 SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQG-KLEPGVLIYNT 261
Query: 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267
+I CK ++ A + KEM+ + PN++TYS+LI LC GR+ +A L +M+ +
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIR-PNVVTYSSLISCLCNYGRWSDASRLLSDMIER 320
Query: 268 DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQE 327
+I PD T++ LID F + GK+ A+K+ + M +P++ Y++L+NGFC +L E
Sbjct: 321 -KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379
Query: 328 AKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILG 387
AK++F+ M + PD + Y TLI FC+ RV+E +E+ +EM +RG + VT+NI++
Sbjct: 380 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 439
Query: 388 GLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP 447
GL + G + A + +++ DG+ N +Y +L+ C+ G+LEKA+ + + P
Sbjct: 440 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 499
Query: 448 HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELL 507
T N ++ +CKAG ED L G KP+ ++ ++ CR A L
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALF 559
Query: 508 DELVIKESGTI 518
E+ KE GT+
Sbjct: 560 KEM--KEDGTL 568
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 108/315 (34%), Positives = 182/315 (57%)
Query: 200 PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIE 259
P+ +N++I +CK G + +A VL M S P+++TY+T++ LC +G+ ++A+E
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLKQAME 225
Query: 260 LFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGF 319
+ + M+ +D PD +TY +LI+ CR V A K+++ M++ GC P+V Y L+NG
Sbjct: 226 VLDRMLQRD-CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGI 284
Query: 320 CKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADI 379
CKEG+L EA + ++M + +P+ I + ++ C GR +A +LL +M +G +
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344
Query: 380 VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRL 439
VTFNI++ LCR+G + A+ +LEK+ G N SY +L+ C++ ++++AIE L
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404
Query: 440 MLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRK 499
M+ RG P T N +L LCK G EDA L L G P ++ +++ + + K
Sbjct: 405 MVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464
Query: 500 LLFAFELLDELVIKE 514
A +LLDE+ K+
Sbjct: 465 TGKAIKLLDEMRAKD 479
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 142/482 (29%), Positives = 243/482 (50%)
Query: 39 KADPPVETSDTCVDARKRSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATY 98
KAD V+ + +R I S I K+ + L + + E KG H+ T
Sbjct: 68 KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQM-ESKGIAHSIYTL 126
Query: 99 ATILDKLARYKK----FEAVDAVLRQMTYETCKFHEGIFLNLMKHFS-NCSLHERVLEMF 153
+ +++ R +K F + +++ + YE IF L+ C + E LE+
Sbjct: 127 SIMINCFCRCRKLSYAFSTMGKIMK-LGYEPDTV---IFNTLLNGLCLECRVSE-ALELV 181
Query: 154 HKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213
++ + KP+L ++T +N L + +V A + + +PN + ++ C
Sbjct: 182 DRMVEMGH-KPTLITLNTLVNGLCLNGKVSDAVVLIDRMVE-TGFQPNEVTYGPVLNVMC 239
Query: 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD 273
K G A E+L++M++ + + + YS +IDGLCK+G A LF EM K D
Sbjct: 240 KSGQTALAMELLRKMEERNIKL-DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG-FKAD 297
Query: 274 ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFD 333
+TYN LI GFC G+ D K++ M +PNV ++ L++ F KEGKL+EA ++
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLK 357
Query: 334 EMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREG 393
EM + P+TI Y +LI+ FC+ R++EA++++ M +GC DI+TFNI++ G C+
Sbjct: 358 EMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKAN 417
Query: 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSN 453
+I++ L + ++ G+ N +Y ++ CQ G+LE A +L + M+ R P +
Sbjct: 418 RIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477
Query: 454 ELLVRLCKAGMAEDAAIALFGLVEMGFKPESDS--WALLVELICRGRKLLFAFELLDELV 511
LL LC G E A + +FG +E K E D + +++ +C K+ A++L L
Sbjct: 478 ILLDGLCDNGELEKA-LEIFGKIEKS-KMELDIGIYMIIIHGMCNASKVDDAWDLFCSLP 535
Query: 512 IK 513
+K
Sbjct: 536 LK 537
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3E9F0 | PP392_ARATH | No assigned EC number | 0.5878 | 0.8848 | 0.9110 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 521 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-27 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-24 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-13 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-09 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-27
Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 4/315 (1%)
Query: 198 LKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257
LK + ++ LI K G +++ FEV EM + + N+ T+ LIDG + G+ +A
Sbjct: 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKA 526
Query: 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG--CNPNVFNYTTL 315
+ M SK+ + PD + +N LI + G VDRA ++ MK +P+ L
Sbjct: 527 FGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585
Query: 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGC 375
M G++ AKEV+ + + +K YT +N + G D AL + +MK++G
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
Query: 376 KADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIE 435
K D V F+ ++ G +++A +L+ GI L SY ++ +KA+E
Sbjct: 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705
Query: 436 LLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELIC 495
L + P +T N L+ LC+ A L + +G P + ++++L+
Sbjct: 706 LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765
Query: 496 RGRKLLFAFELLDEL 510
R +LL +
Sbjct: 766 RKDDADVGLDLLSQA 780
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 60/250 (24%), Positives = 112/250 (44%), Gaps = 35/250 (14%)
Query: 199 KPNTCIFNILIKHHCKRGTLESAFEVLKEMK-KSQMSYPNLITYSTLIDGLCKNGRFREA 257
KP+ +FN LI + G ++ AF+VL EMK ++ P+ IT L+ G+ A
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598
Query: 258 IELFEEM----------------------------------VSKDQILPDALTYNVLIDG 283
E+++ + + K + PD + ++ L+D
Sbjct: 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658
Query: 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD 343
G +D+A +I++ + G +Y++LM ++A E+++++K+ L+P
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718
Query: 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLE 403
LI C ++ +ALE+L EMK G + +T++I+L R+ + L +L
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778
Query: 404 KLWYDGIYLN 413
+ DGI N
Sbjct: 779 QAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-24
Identities = 80/316 (25%), Positives = 149/316 (47%), Gaps = 9/316 (2%)
Query: 169 ISTCLNLLIESNQVDLA-QNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKE 227
ISTC +S +VD + F + N + + N F LI + G + AF
Sbjct: 479 ISTC----AKSGKVDAMFEVFHEMVNAGV--EANVHTFGALIDGCARAGQVAKAFGAYGI 532
Query: 228 MKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ-ILPDALTYNVLIDGFCR 286
M+ S+ P+ + ++ LI ++G A ++ EM ++ I PD +T L+
Sbjct: 533 MR-SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 287 GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIG 346
G+VDRAK++ + + YT +N ++G A ++D+MK +KPD +
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 347 YTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLW 406
++ L++ AG +D+A E+L++ +++G K V+++ ++G ++AL + E +
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 407 YDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAE 466
+ ++ ++ C+ +L KA+E+L M G P+ T + LLV + A+
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 467 DAAIALFGLVEMGFKP 482
L E G KP
Sbjct: 772 VGLDLLSQAKEDGIKP 787
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 80.9 bits (201), Expect = 2e-19
Identities = 24/50 (48%), Positives = 39/50 (78%)
Query: 342 PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCR 391
PD + Y TLI+ +C+ G+V+EAL+L EMK+RG K ++ T++I++ GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 6e-19
Identities = 26/51 (50%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR 286
P+++TY+TLIDG CK G+ EA++LF EM + I P+ TY++LIDG C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 1e-18
Identities = 82/389 (21%), Positives = 145/389 (37%), Gaps = 66/389 (16%)
Query: 169 ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEM 228
I C++LL + + L K F K K+ ++ AF K +
Sbjct: 386 IKDCIDLLEDMEKRGLLD----------MDKIYHAKFFKACK---KQRAVKEAFRFAKLI 432
Query: 229 KKSQMSYPNLI----TYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284
+ +S N++ S IDG + L +E K D Y LI
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGA------LRVLRLVQEAGLK----ADCKLYTTLISTC 482
Query: 285 CRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDT 344
+ GKVD ++ M N G NV + L++G + G++ +A + M++ +KPD
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 345 IGYTTLINCFCRAGRVDEALELLKEMKERG--CKADIVTFNIILGGLCREGKIEEALGML 402
+ + LI+ ++G VD A ++L EMK D +T ++ G+++ A +
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 403 EKLWYDGIYLNKASYRIVLNFSCQKGELE------------------------------- 431
+ + I Y I +N QKG+ +
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 432 ----KAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSW 487
KA E+L+ +G + + L+ A + A + + +P +
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
Query: 488 ALLVELICRGRKLLFAFELLDELVIKESG 516
L+ +C G +L A E+L E +K G
Sbjct: 723 NALITALCEGNQLPKALEVLSE--MKRLG 749
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 1e-18
Identities = 68/261 (26%), Positives = 119/261 (45%), Gaps = 18/261 (6%)
Query: 151 EMFHKIHPITREKPSLKA-ISTCLNLLIESNQVDLA----QNFLKYSNQHLRLKPNTCIF 205
EM + HPI + ++ A + C N + QVD A Q +Y+ +K ++
Sbjct: 567 EMKAETHPIDPDHITVGALMKACAN----AGQVDRAKEVYQMIHEYN-----IKGTPEVY 617
Query: 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMV 265
I + ++G + A + +MKK + P+ + +S L+D G +A E+ ++
Sbjct: 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVK-PDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 266 SKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKL 325
+ I ++Y+ L+ +A ++ E +K+ P V L+ C+ +L
Sbjct: 677 KQG-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735
Query: 326 QEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNII 385
+A EV EMK L P+TI Y+ L+ R D L+LL + KE G K ++V I
Sbjct: 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
Query: 386 LGGLCREGKIEEALGMLEKLW 406
GLC + E+A + E +
Sbjct: 796 T-GLCLR-RFEKACALGEPVV 814
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 8e-18
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 272 PDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321
PD +TYN LIDG+C+ GKV+ A K+ MK G PNV+ Y+ L++G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 4e-17
Identities = 80/342 (23%), Positives = 146/342 (42%), Gaps = 42/342 (12%)
Query: 198 LKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257
+P+ + N ++ H K G L A + EM + NL ++ T+I GL G +REA
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER-----NLASWGTIIGGLVDAGNYREA 208
Query: 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMN 317
LF EM +D + T+ V++ G +++ + G + F L++
Sbjct: 209 FALFREMW-EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 318 GFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA 377
+ K G +++A+ VFD M + T+ + +++ + G +EAL L EM++ G
Sbjct: 268 MYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 378 DIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELL 437
D TF+I++ R +E A L G L+ + +++ + G +E A +
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
Query: 438 RLM----------LCRGFLPHYATSN--ELLVRLCKAGMAED--------AAIALFGLVE 477
M L G+ H + E+ R+ G+A + +A GL E
Sbjct: 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 478 MGF------------KPESDSWALLVELICRGRKLLFAFELL 507
G+ KP + +A ++EL+ R L A+ ++
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 1e-16
Identities = 22/50 (44%), Positives = 37/50 (74%)
Query: 307 PNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356
P+V Y TL++G+CK+GK++EA ++F+EMK +KP+ Y+ LI+ C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 1e-15
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 200 PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK 250
P+ +N LI +CK+G +E A ++ EMKK + PN+ TYS LIDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK-PNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 78/345 (22%), Positives = 134/345 (38%), Gaps = 44/345 (12%)
Query: 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIEL 260
+ + N LI+ + G+ A E S+M + ++++ +I G KNG +A+E
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEA-----EKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 261 FEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFC 320
+ M +D + PD +T ++ G +D K+ E + G V L+ +
Sbjct: 377 YALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435
Query: 321 KEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIV 380
K + +A EVF + D I +T++I R EAL ++M K + V
Sbjct: 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSV 490
Query: 381 TFNIILG-----GLCREGKIEEALGMLEKLWYDGIYLNK--------------------- 414
T L G GK A + + +DG N
Sbjct: 491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550
Query: 415 ----ASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAI 470
S+ I+L G+ A+EL M+ G P T LL ++GM +
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ-GL 609
Query: 471 ALFGLVEMGFK--PESDSWALLVELICRGRKLLFAFELLDELVIK 513
F +E + P +A +V+L+ R KL A+ ++++ I
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT 654
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 60.4 bits (148), Expect = 4e-12
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 236 PNLITYSTLIDGLCKNGRFREAIELFEEMV 265
P+++TY+TLIDGLC+ GR EA+EL +EM
Sbjct: 5 PDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 58.5 bits (143), Expect = 1e-11
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 340 LKPDTIGYTTLINCFCRAGRVDEALELLKEMK 371
LKPD + Y TLI+ CRAGRVDEA+ELL EM+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 58.5 bits (143), Expect = 1e-11
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 303 NGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336
G P+V Y TL++G C+ G++ EA E+ DEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 64/306 (20%), Positives = 133/306 (43%), Gaps = 41/306 (13%)
Query: 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQI-------------------LPDAL------ 275
Y + L ++GR ++ I+L E+M + + + +A
Sbjct: 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 276 ------TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAK 329
T+N+L+ +D A +++ ++ G + YTTL++ K GK+
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 330 EVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGL 389
EVF EM N ++ + + LI+ RAG+V +A M+ + K D V FN ++
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 390 CREGKIEEALGMLEKLWYDG--IYLNKASYRIVLNFSCQKGELEKAIELLRLML---CRG 444
+ G ++ A +L ++ + I + + ++ G++++A E+ +++ +G
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 445 FLPHYATSNELLVRLCKAGMAEDAAIALF-GLVEMGFKPESDSWALLVELICRGRKLLFA 503
Y + V C D A++++ + + G KP+ ++ LV++ L A
Sbjct: 613 TPEVYTIA----VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 504 FELLDE 509
FE+L +
Sbjct: 669 FEILQD 674
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 245 IDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304
I+ L GR REA+ELFE + + A TY+ L++ + K + ++++G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 305 CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYT--TLINCFCRAGRVDE 362
P+ + ++ K G L +A+ +FDEM P+ + T+I AG E
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYRE 207
Query: 363 ALELLKEMKERGCKADIVTFNIIL 386
A L +EM E G A+ TF ++L
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVML 231
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 5e-11
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264
+NIL+ + G A E+ M +S ++ P+ +T+ +L+ ++G + +E F M
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVN-PDEVTFISLLCACSRSGMVTQGLEYFHSM 615
Query: 265 VSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK--- 321
K I P+ Y ++D R GK+ A + M P+ + L+N C+
Sbjct: 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNA-CRIHR 671
Query: 322 ---EGKLQEAKEVFDEMKNFLLKPDTIGYTTLI-NCFCRAGRVDEALELLKEMKERGCKA 377
G+L A+ +F+ L P+++GY L+ N + AG+ DE + K M+E G
Sbjct: 672 HVELGELA-AQHIFE------LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724
Query: 378 D 378
D
Sbjct: 725 D 725
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 8e-11
Identities = 63/257 (24%), Positives = 113/257 (43%), Gaps = 27/257 (10%)
Query: 205 FNILIKHHCKRGTLESAFEVLKEMKKS--QMSYPNLITYST-LIDGLCKNGRFREAIELF 261
F+I+I+ + LE A K+ + +P I +T L+D K GR +A +F
Sbjct: 328 FSIMIRIFSRLALLEHA----KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
Query: 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321
+ M K+ I ++N LI G+ G+ +A ++ E M G PN + +++
Sbjct: 384 DRMPRKNLI-----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438
Query: 322 EGKLQEAKEVFDEM-KNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIV 380
G ++ E+F M +N +KP + Y +I R G +DEA +++ +A
Sbjct: 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR-------RAPFK 491
Query: 381 TFNIILGGL---CR-EGKIEEALGMLEKLWYDGIYLNK-ASYRIVLNFSCQKGELEKAIE 435
+ L CR +E EKL+ G+ K +Y ++LN G +A +
Sbjct: 492 PTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAK 549
Query: 436 LLRLMLCRGFLPHYATS 452
++ + +G H A +
Sbjct: 550 VVETLKRKGLSMHPACT 566
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 53/239 (22%), Positives = 104/239 (43%), Gaps = 19/239 (7%)
Query: 135 NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIS--TCLNLLIESNQVDLAQNFLKYS 192
L++ +S C ++ LE+FH I P IS + + L +N+ A F +
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNI-------PEKDVISWTSIIAGLRLNNRCFEALIFFRQ- 480
Query: 193 NQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252
L LKPN+ + + G L E+ + ++ + + + + L+D + G
Sbjct: 481 -MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP-NALLDLYVRCG 538
Query: 253 RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNY 312
R A F D +++N+L+ G+ GK A ++ M +G NP+ +
Sbjct: 539 RMNYAWNQFNSHEK------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592
Query: 313 TTLMNGFCKEGKLQEAKEVFDEMK-NFLLKPDTIGYTTLINCFCRAGRVDEALELLKEM 370
+L+ + G + + E F M+ + + P+ Y +++ RAG++ EA + +M
Sbjct: 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 347 YTTLINCFCRAGRVDEALELLKEMKERGCKADI 379
Y TLI+ C+AGRV+EALEL KEMKERG + D+
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 7e-09
Identities = 17/29 (58%), Positives = 25/29 (86%)
Query: 347 YTTLINCFCRAGRVDEALELLKEMKERGC 375
Y +LI+ +C+AG+++EALEL KEMKE+G
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 2e-08
Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 373 RGCKADIVTFNIILGGLCREGKIEEALGMLEK 404
+G K D+VT+N ++ GLCR G+++EA+ +L++
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 3e-08
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 270 ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301
+ PD +TYN LIDG CR G+VD A ++++ M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 7e-08
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 239 ITYSTLIDGLCKNGRFREAIELFEEMVSKD 268
+TY++LI G CK G+ EA+ELF+EM K
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 9e-08
Identities = 22/36 (61%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 239 ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA 274
+TY+TLIDGLCK GR EA+ELF+EM + I PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG-IEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 5e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNV 309
TYN LIDG C+ G+V+ A ++ + MK G P+V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 1e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 198 LKPNTCIFNILIKHHCKRGTLESAFEVLKEMK 229
LKP+ +N LI C+ G ++ A E+L EM+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 378 DIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLN 422
D+VT+N ++ G C++GK+EEAL + ++ GI N +Y I+++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 4e-06
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 312 YTTLMNGFCKEGKLQEAKEVFDEMK 336
Y +L++G+CK GKL+EA E+F EMK
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-06
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 347 YTTLINCFCRAGRVDEALELLKEMKERGCKA 377
Y L+ +AG D AL +L+EMK G K
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-06
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGC 305
TYN LI G+C+ GK++ A ++ + MK G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.1 bits (110), Expect = 9e-06
Identities = 54/261 (20%), Positives = 93/261 (35%), Gaps = 4/261 (1%)
Query: 253 RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNY 312
A+ + E ++K AL L G + + + E ++ +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 313 TTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIG-YTTLINCFCRAGRVDEALELLKEMK 371
L K G+L+EA E+ ++ L P+ L G+ +EALELL++
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 372 ERGCKADIVTFNIILGGLCREGKIEEALGMLEKL--WYDGIYLNKASYRIVLNFSCQKGE 429
D+ + LG L G EEAL + EK + + + G
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 430 LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWAL 489
E+A+ELL L L + K G E+A +E+ +++
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALYN 241
Query: 490 LVELICRGRKLLFAFELLDEL 510
L L+ + A E L++
Sbjct: 242 LALLLLELGRYEEALEALEKA 262
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 312 YTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDT 344
Y TL++G CK G+++EA E+F EMK ++PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 54/266 (20%), Positives = 97/266 (36%), Gaps = 84/266 (31%)
Query: 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEE 263
+ N LI + K G + SA V M + + I+++ +I G +NG E +ELF
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRR-----DCISWNAMISGYFENGECLEGLELFFT 278
Query: 264 MVSKDQILPDALT-----------------------------------YNVLIDGFCRGG 288
M + + PD +T N LI + G
Sbjct: 279 MR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337
Query: 289 KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI--- 345
A+K+ M+ + ++T +++G+ K G +A E + M+ + PD I
Sbjct: 338 SWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393
Query: 346 -------------------------GYTT-------LINCFCRAGRVDEALELLKEMKER 373
G + LI + + +D+ALE+ + E+
Sbjct: 394 SVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453
Query: 374 GCKADIVTFNIILGGLCREGKIEEAL 399
D++++ I+ GL + EAL
Sbjct: 454 ----DVISWTSIIAGLRLNNRCFEAL 475
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 50/254 (19%), Positives = 105/254 (41%), Gaps = 17/254 (6%)
Query: 244 LIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303
LI K G A +F+ M +D I ++N +I G+ G+ ++ M+
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCI-----SWNAMISGYFENGECLEGLELFFTMREL 282
Query: 304 GCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEA 363
+P++ T++++ G + +E+ + D +LI + G EA
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 364 LELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNF 423
++ M+ + D V++ ++ G + G ++AL + D + ++ + VL+
Sbjct: 343 EKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398
Query: 424 SCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPE 483
G+L+ ++L L +G + + +N L+ K D A+ +F PE
Sbjct: 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI-DKALEVF-----HNIPE 452
Query: 484 SD--SWALLVELIC 495
D SW ++ +
Sbjct: 453 KDVISWTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 205 FNILIKHHCKRGTLESAFEVLKEMKKS 231
+N L+ K G + A VL+EMK S
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKAS 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 78/363 (21%), Positives = 138/363 (38%), Gaps = 46/363 (12%)
Query: 92 NHNNATYATILDKLARY--KKFE----AVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145
N A Y L L + K +E + L+ ++ + L + +
Sbjct: 259 NSPLAHY---LKALVDFQKKNYEDARETLQDALKSAP----EYLPALLLAGASEYQLGN- 310
Query: 146 HERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP-NTCI 204
E+ + ++I S +A ++ + +VD A L + L L P +
Sbjct: 311 LEQAYQYLNQILKYAPN--SHQARRLLASIQLRLGRVDEAIATL---SPALGLDPDDPAA 365
Query: 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK--NGRFREAIELFE 262
++L + + G E A E L K +++ N + L G+ K G EAI E
Sbjct: 366 LSLLGEAYLALGDFEKAAEYLA--KATELDPENAAARTQL--GISKLSQGDPSEAIADLE 421
Query: 263 EMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIME-FMKNNGCNPNVFNYTTLMNGFCK 321
D L A +LI + R G+ D+A + K N ++ N L +
Sbjct: 422 TAAQLDPELGRADL--LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL--LGAIYLG 477
Query: 322 EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCF---CRAGRVDEALELLKEMKERGCKAD 378
+G L +A+E F++ L + + N + G D+A++ +++ K +
Sbjct: 478 KGDLAKAREAFEKA----LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-N 532
Query: 379 IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS---CQKGELEKAIE 435
+ + G R G EEA+ LEK LN L + KG+L+KA+
Sbjct: 533 LRAILALAGLYLRTGNEEEAVAWLEKA----AELNPQEIEPALALAQYYLGKGQLKKALA 588
Query: 436 LLR 438
+L
Sbjct: 589 ILN 591
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Query: 232 QMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVD 291
+M +L +++ L+ G K G F EA+ L+ M+ + PD T+ ++ C GG D
Sbjct: 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRT-C-GGIPD 202
Query: 292 --RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT 349
R +++ + G +V L+ + K G + A+ VFD M + D I +
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNA 258
Query: 350 LINCFCRAGRVDEALELLKEMKERGCKADIVT 381
+I+ + G E LEL M+E D++T
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMT 290
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 380 VTFNIILGGLCREGKIEEALGMLEKLWYDGI 410
VT+N ++ G C+ GK+EEAL + +++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNP 307
TYN L+ + G D A ++E MK +G P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 238 LITYSTLIDGLCKNGRFREAIELFEEM 264
L TY+ L+ L K G A+ + EEM
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEM 27
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 204 IFNILIKHHCKRGTLESAFEVLKEMKKS 231
+N LI +CK G LE A E+ KEMK+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 380 VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLN 413
VT+N ++ GLC+ G++EEAL + +++ GI +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 247 GLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGK-VDRAKKIMEFMKNNGC 305
LC +G+ +A++L E M + ++ D Y L C + V+ ++ ++
Sbjct: 60 ALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHP 117
Query: 306 NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALE 365
+ V +++ F + G+L A VF +M + D + L+ + +AG DEAL
Sbjct: 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 366 LLKEMKERGCKADIVTFNIIL---GGL 389
L M G + D+ TF +L GG+
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGI 200
|
Length = 857 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.8 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.78 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.76 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.76 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.76 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.74 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.74 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.74 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.73 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.73 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.69 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.65 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.65 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.63 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.61 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.59 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.56 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.55 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.54 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.54 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.52 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.52 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.51 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.5 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.43 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.41 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.4 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.39 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.38 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.37 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.36 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.36 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.33 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.31 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.28 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.27 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.23 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.23 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.15 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.15 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.13 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.12 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.1 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.1 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.09 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.05 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.05 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.04 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.03 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.01 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.97 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.94 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.94 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.89 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.89 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.89 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.87 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.85 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.84 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.83 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.81 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.78 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.74 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.74 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.73 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.72 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.71 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.7 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.67 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.52 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.51 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.49 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.46 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.4 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.29 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.29 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.26 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.19 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.18 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.15 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.12 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.09 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.08 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.06 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.02 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.02 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.01 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.01 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.0 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.99 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.96 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.95 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.94 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.93 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.92 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.91 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.91 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.9 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.9 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.88 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.88 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.87 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.86 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.86 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.84 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.83 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.83 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.81 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.8 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.79 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.78 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.75 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.73 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.68 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.66 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.64 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.57 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.54 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.52 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.51 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.49 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.48 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.44 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.4 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.38 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.36 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.32 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.26 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.26 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.21 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.18 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.17 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.17 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.16 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.14 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.13 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.09 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.07 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.0 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.92 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.92 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.91 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.85 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.84 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.82 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.8 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.79 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.75 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.68 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.65 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.57 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.56 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.53 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.52 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.5 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.49 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.46 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.44 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.42 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.42 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.39 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.36 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.33 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.31 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.3 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.3 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.26 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.22 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.15 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.14 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.97 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.94 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.8 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.73 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.69 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.62 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.58 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.54 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.47 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.45 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.3 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.24 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.14 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.09 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.04 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.97 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.95 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.89 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.87 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.75 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.68 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.62 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.4 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.38 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 94.27 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.13 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.0 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.89 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.86 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.83 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.81 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 93.72 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.69 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.43 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 93.42 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 93.42 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.4 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.25 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.96 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.81 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.69 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.53 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.51 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 92.28 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.24 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.93 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.84 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.77 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.7 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.53 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.26 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.88 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.86 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.66 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.38 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.3 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.26 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.17 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.05 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.94 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.67 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.63 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 89.56 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.36 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.35 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.29 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.29 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.0 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.95 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.94 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.68 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.68 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.4 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.39 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.32 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.31 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.28 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.26 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.14 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 87.97 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.78 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.77 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 87.74 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.7 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.7 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.15 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 86.66 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.58 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.28 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.07 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.99 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.66 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 85.35 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.29 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 85.22 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.15 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 85.14 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 84.8 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 84.17 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.65 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.55 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.49 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 82.99 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.47 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 81.71 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.4 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 81.12 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.57 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 80.37 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-63 Score=501.79 Aligned_cols=452 Identities=19% Similarity=0.285 Sum_probs=276.5
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
|+..+|+.++.+|++.|++++|+++|+.| ...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M-~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLV-QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 55556666666666666666666666665 34456666666666666666666666666666666666666666666666
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCcHHHHHHHHHHHHhc
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQH-LRLKPNTCIFNILIKHHCKR 215 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 215 (521)
|.+|++.|++++|+++|++|.. .+..||..+|+.++.+|++.|++++|.++|+.|... .++.||..+|+.++.+|++.
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~-~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 6666666666666666666644 345566666666666666666666666666666431 34556666666666666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 009977 216 GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKK 295 (521)
Q Consensus 216 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 295 (521)
|++++|.++|++|.+.+.. |+..+|+.++.+|++.|++++|+++|++|... |+.||..+|+.++.+|++.|++++|.+
T Consensus 593 G~ldeA~elf~~M~e~gi~-p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6666666666666666654 56666666666666666666666666666554 456666666666666666666666666
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009977 296 IMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGC 375 (521)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 375 (521)
+++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|+++|++|.+.|+
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 66666666666666666666666666666666666666666656666666666666666666666666666666666666
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----C-------------------CCHHH
Q 009977 376 KADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ----K-------------------GELEK 432 (521)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~ 432 (521)
.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++..|.+ + +..++
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 666666666666666666666666666666666666666666666544321 0 11245
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 433 AIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 433 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
|+.+|++|++.|+.||..+|+.++.++...+..+.+..+++.|...+..|+..+|+.+++++.+. .++|..++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 66666666666666666666666655555555666666665555555555566666666655221 2456666666666
Q ss_pred cC
Q 009977 513 KE 514 (521)
Q Consensus 513 ~~ 514 (521)
.+
T Consensus 909 ~G 910 (1060)
T PLN03218 909 LG 910 (1060)
T ss_pred cC
Confidence 54
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=495.05 Aligned_cols=453 Identities=19% Similarity=0.275 Sum_probs=427.5
Q ss_pred CCCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHH
Q 009977 56 RSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLN 135 (521)
Q Consensus 56 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (521)
.++...+..++..+.+.|++++|+++|++|....-++++..+++.++..|.+.|.+++|..+++.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 35677888999999999999999999999965543577888899999999999999999999999974 88999999
Q ss_pred HHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc
Q 009977 136 LMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR 215 (521)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (521)
++.+|++.|++++|.++|+.|.. .+..|+..+|+.++.+|++.|++++|.++|+.|.+. |+.||..+|+.+|.+|++.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999986 677999999999999999999999999999999765 8999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009977 216 GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK-DQILPDALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 216 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (521)
|++++|.++|++|...|.. ||..+|+.++.+|++.|++++|.++|++|... .++.||..+|+.++.+|++.|++++|.
T Consensus 521 G~~eeAl~lf~~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999986 99999999999999999999999999999763 468999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009977 295 KIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERG 374 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 374 (521)
++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009977 375 CKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNE 454 (521)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 454 (521)
+.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c-------------------CcHHHHHHHHHHHH
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICR----G-------------------RKLLFAFELLDELV 511 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~ 511 (521)
++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|++|+
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876432 1 23467999999999
Q ss_pred HcCc
Q 009977 512 IKES 515 (521)
Q Consensus 512 ~~~~ 515 (521)
+.+-
T Consensus 840 ~~Gi 843 (1060)
T PLN03218 840 SAGT 843 (1060)
T ss_pred HCCC
Confidence 9863
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-61 Score=484.65 Aligned_cols=437 Identities=20% Similarity=0.281 Sum_probs=392.2
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
.+.++|+.++..+.+.|++++|+++|++|....++.||..+|+.++.+|.+.++++.+.+++..|.+.|+.|+..+++.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 45679999999999999999999999999766668899999999999999999999999999999999999999999999
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-----------------
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLK----------------- 199 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 199 (521)
+.+|++.|++++|.++|++|. .|+..+|+.++.+|++.|++++|.++|++|.+. +..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999996 589999999999999999999999999999653 444
Q ss_pred ------------------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 200 ------------------PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELF 261 (521)
Q Consensus 200 ------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 261 (521)
||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|+++|
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 4555667888888899999999999988864 68889999999999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
++|.+. |+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.|+.+|++.|++++|.++|++|.+
T Consensus 314 ~~M~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 314 YEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 999765 688999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCccCHHHHHHH
Q 009977 342 PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWY-DGIYLNKASYRIV 420 (521)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l 420 (521)
||..+||.|+.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 688899999999999999999999999999999999999999999999999999999999999976 5888999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCc
Q 009977 421 LNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKP-ESDSWALLVELICRGRK 499 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 499 (521)
+.+|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+. .| +..+|..++..|.+.|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCC
Confidence 99999999999999988776 57889999999999999999999999998888755 34 45789999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 009977 500 LLFAFELLDELVIKE 514 (521)
Q Consensus 500 ~~~A~~~~~~m~~~~ 514 (521)
+++|.+++++|.+++
T Consensus 544 ~~~A~~v~~~m~~~g 558 (697)
T PLN03081 544 QAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999876
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=486.14 Aligned_cols=448 Identities=16% Similarity=0.226 Sum_probs=320.3
Q ss_pred cccccCCCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCH
Q 009977 51 VDARKRSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHE 130 (521)
Q Consensus 51 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (521)
++....+++++|+.+|.+|.+.|++++|+++|++|. ..|+.||..+|+.++.+|...+++..+.+++..+.+.|+.++.
T Consensus 144 f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (857)
T PLN03077 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222 (857)
T ss_pred HhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc
Confidence 445566899999999999999999999999999994 5589999998888888887777777777777777777777777
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHH
Q 009977 131 GIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIK 210 (521)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (521)
.+++.++.+|++.|++++|.++|++|. .++..+|+.++.+|++.|++++|.++|++|.+. |+.||..+|+.++.
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVIS 296 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHH
Confidence 777777777777777777777777775 456667777777777777777777777777543 66666666666666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH
Q 009977 211 HHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV 290 (521)
Q Consensus 211 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (521)
+|.+.|+++.|.+++..|.+.|.. ||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCH
Confidence 666666666666666666666654 666666666666666666666666666653 24555666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEM 370 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 370 (521)
++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.++.+|++.|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 66666666666666666666666666666666666666666666555555555555555555555555555555555544
Q ss_pred HHc------------------------------CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------
Q 009977 371 KER------------------------------GCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI---------- 410 (521)
Q Consensus 371 ~~~------------------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------- 410 (521)
.+. +..||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus 451 ~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 321 2444554444444333333333322222222222221
Q ss_pred --------------------ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009977 411 --------------------YLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAI 470 (521)
Q Consensus 411 --------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 470 (521)
.+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.+
T Consensus 531 i~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 456677888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 471 ALFGLV-EMGFKPESDSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 471 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
+|+.|. +.|+.|+..+|..++.+|++.|++++|.+++++|.
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 999998 68999999999999999999999999999999985
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=473.89 Aligned_cols=407 Identities=15% Similarity=0.233 Sum_probs=372.2
Q ss_pred CCCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHH
Q 009977 56 RSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLN 135 (521)
Q Consensus 56 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (521)
.++..+|+.++.++.+.++++.|.+++..+ ...|+.||..+|+.++..|.+.|++++|.++|++|.+ |+..+|+.
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~ 194 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGT 194 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHH
Confidence 356788999999999999999999999888 4568889999999999999999999999999999864 57778999
Q ss_pred HHHHHHccCcHHHHHHHHHhhccccCC-----------------------------------CCCHhHHHHHHHHHHhcC
Q 009977 136 LMKHFSNCSLHERVLEMFHKIHPITRE-----------------------------------KPSLKAISTCLNLLIESN 180 (521)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------------------------------~~~~~~~~~ll~~~~~~~ 180 (521)
++.+|++.|++++|+++|++|.. .+. .++..+++.++.+|++.|
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999998864 233 345556678889999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009977 181 QVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIEL 260 (521)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 260 (521)
++++|.++|+.|. ++|..+||.++.+|++.|++++|.++|++|.+.|.. ||..||+.++.+|++.|++++|.++
T Consensus 274 ~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 274 DIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS-IDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred CHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999884 368999999999999999999999999999999986 9999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009977 261 FEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLL 340 (521)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 340 (521)
+..|.+. |+.||..+++.++.+|++.|++++|.++|++|. .+|..+|+.|+.+|++.|+.++|.++|++|.+.|+
T Consensus 348 ~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~ 422 (697)
T PLN03081 348 HAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422 (697)
T ss_pred HHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999887 799999999999999999999999999999996 47899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHH
Q 009977 341 KPDTIGYTTLINCFCRAGRVDEALELLKEMKE-RGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRI 419 (521)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 419 (521)
.||..+|+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ +..|+..+|+.
T Consensus 423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~ 499 (697)
T PLN03081 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAA 499 (697)
T ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHH
Confidence 99999999999999999999999999999986 599999999999999999999999999998765 57899999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 420 VLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
++.+|...|+++.|..+++++. ++.| +..+|..++..|++.|++++|.++++.|.+.|+.+.+
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 9999999999999999999998 5667 5779999999999999999999999999999986544
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-58 Score=477.87 Aligned_cols=444 Identities=15% Similarity=0.200 Sum_probs=337.6
Q ss_pred ccccccCCCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcC
Q 009977 50 CVDARKRSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFH 129 (521)
Q Consensus 50 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (521)
.++....++.++||.+|.+|.+.|++++|+++|++| ...|+.||..+|+.++.+|.+.|+.+.|.+++..|.+.|+.|+
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 456667789999999999999999999999999999 5668999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q 009977 130 EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILI 209 (521)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 209 (521)
..+++.++.+|++.|++++|.++|++|. .|+..+|+.++.+|.+.|++++|.++|+.|.+. ++.||..+|+.++
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll 396 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVL 396 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHH
Confidence 9999999999999999999999999986 578889999999999999999999999998654 8889988998888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 009977 210 KHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGK 289 (521)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 289 (521)
.+|++.|++++|.++++.+.+.|.. ++..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~~~~g~ 470 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLI-SYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNR 470 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHCCC
Confidence 8888888888888888888888876 7888888888888888888888888887743 356677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 290 VDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKE 369 (521)
Q Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 369 (521)
.++|..+|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|+.
T Consensus 471 ~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~ 549 (857)
T PLN03077 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549 (857)
T ss_pred HHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence 7777777777764 466777777777777777776666666666666666666666666666666666666666666665
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HCCCCCC
Q 009977 370 MKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLML-CRGFLPH 448 (521)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p~ 448 (521)
+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+
T Consensus 550 ~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 550 H-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred c-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 4 246666666666666666666666666666666666666666666666666666666666666666 4566666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 449 YATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
..+|+.++++|++.|++++|.+++++| .+.|+..+|..|+.+|...|+.+.+....+++.+..|
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 666666666666666666666666555 2355555555555555555555555444444444433
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=280.17 Aligned_cols=431 Identities=13% Similarity=0.062 Sum_probs=230.9
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
.|..+...+...|++++|.+.|+++.... +.+...+..++..+...|++++|.+.++++.+.+ +.+..++..+...+
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLY 543 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 44444445555555555555555443321 2233344444445555555555555555554433 33344444555555
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHH
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLES 220 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 220 (521)
.+.|++++|...++++.. ..+.+...+..++..+...|++++|..+++.+.+ ..+.+..+|..++..+...|++++
T Consensus 544 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAE--LNPQEIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHcCCHHHHHHHHHHHHH--hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555432 1223333444455555555555555555555543 223344555555555555555555
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 221 AFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 221 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
|...|+++.+..+ .+...+..++.++...|++++|...|+++.+. .+.+..++..++..+...|++++|.++++.+
T Consensus 620 A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 620 AVSSFKKLLALQP--DSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554443 34445555555555555555555555555543 2334455555555555555555555555555
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHh
Q 009977 301 KNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIV 380 (521)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 380 (521)
.+.+ +.+...+..++..+...|++++|.+.|+.+.... |+..++..+..++.+.|++++|.+.++.+.+..+. +..
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~ 771 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAV 771 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH
Confidence 5543 3344455555555566666666666666555432 33344455555556666666666666665554332 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRL 459 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 459 (521)
.+..+...|...|++++|..+|+++.+..+ .+..+++.+...+...|+ .+|+.+++++.+. .| +..++..+...+
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHH
Confidence 555566666666666666666666655533 245555666666666666 5566666666542 22 444455556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 460 CKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 460 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
...|++++|...++++++.+ +.+..++..++.++.+.|+.++|.+++++|+
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666666554 2255666666666666666666666666664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=274.57 Aligned_cols=439 Identities=13% Similarity=0.061 Sum_probs=257.3
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
.+..+...+.+.|++++|.++|+++.... +.+...+..+...+...|++++|.+.++.+.+.+ +........++..+
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSY 441 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHH
Confidence 34455555555566666666665554322 2334445555555555555555555555555443 12223333444455
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHH
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLES 220 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 220 (521)
.+.|++++|+++++++.. ..+.+..++..+..++...|++++|...|+++.+. .+.+...+..++..+...|++++
T Consensus 442 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 555555555555555542 22334455666666666666666666666666532 22344456666666666666666
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 221 AFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 221 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
|.+.|+++....+ .+..++..++..+...|++++|..+++++.... +.+...+..++..+...|++++|..+++.+
T Consensus 518 A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 518 AIQRFEKVLTIDP--KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHhCc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666554 455566666666666666666666666665542 344455566666666666666666666666
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHh
Q 009977 301 KNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIV 380 (521)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 380 (521)
.+.. +.+...|..++.++...|++++|...|+.+.+.. ..+...+..+...+...|++++|..+++++.+..+. +..
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 670 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTE 670 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHH
Confidence 6543 4455566666666666666666666666665532 123555666666666666666666666666655332 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
++..++..+...|++++|..+++.+...+. .+...+..+...+...|++++|...|+.+... .|+..++..++.++.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHH
Confidence 666666666666666666666666665532 24555666666666666677776666666643 344455555666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 461 KAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
+.|++++|...++++.+.. +.+...+..++..|...|++++|.+.|+++++..|.+
T Consensus 748 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 6666666666666666543 3345566666666666666666766666666665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-26 Score=207.35 Aligned_cols=435 Identities=16% Similarity=0.099 Sum_probs=322.0
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHH
Q 009977 62 HGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFS 141 (521)
Q Consensus 62 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (521)
...+..-..+.|++++|++.-...-+++ +.+......+-..+....+.+...+--....+.. +.-..+|..+.+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 4456666778899999998877653333 2222223333445555555665544444444333 445678888888888
Q ss_pred ccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHH-HHHHHHHHHHhcCChHH
Q 009977 142 NCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTC-IFNILIKHHCKRGTLES 220 (521)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 220 (521)
..|++++|+..|+.+.+. .+.....|..+..++...|+.+.|.+.|...+ .+.|+.. ....+...+...|++.+
T Consensus 128 erg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~al---qlnP~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcchhhhhcchhHHHHhhcccch
Confidence 888888888888887632 23445678888888888888888888888776 3556544 44556666667888888
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 221 AFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 221 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
|...|.+..+..+ .-...|..|...+-.+|+...|+..|++..+.++.- ...|..|...|...+.+++|...|.+.
T Consensus 203 a~~cYlkAi~~qp--~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f--~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 203 AKACYLKAIETQP--CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF--LDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred hHHHHHHHHhhCC--ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc--hHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 8888888877665 345678888888888888888888888887764322 346788888888888888888888888
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 009977 301 KNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADI 379 (521)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 379 (521)
.... +....++..+...|...|+.+.|+..+++..+ ..|+ ...|+.|..++-..|++.+|.+.+.+.+...+. ..
T Consensus 279 l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-ha 354 (966)
T KOG4626|consen 279 LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HA 354 (966)
T ss_pred HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cH
Confidence 7764 45566777788888888888888888888876 3555 678888888888888888888888888876544 56
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 009977 380 VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVR 458 (521)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 458 (521)
.+.+.|...|...|.+++|..+|....+..+. -....+.|...|-+.|++++|+..|++++ .+.| -...|+.+...
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchH
Confidence 67888888888888888888888888775332 34567788888888888888888888888 5677 45677888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 459 LCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
|...|+.+.|.+.+.+++.. .|.. +.+..|...|...|+..+|+..++++++-.|+.
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 88888888888888887765 4554 677788888888888888888888888877664
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-23 Score=224.00 Aligned_cols=430 Identities=10% Similarity=0.037 Sum_probs=333.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCH-HHH----------
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHE-GIF---------- 133 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~---------- 133 (521)
....+...|++++|+..|+++++.. +.+...+..+..++.+.|++++|+..|++..+....... ..+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 3556778899999999999987654 557888999999999999999999999999876532211 111
Q ss_pred --HHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHH
Q 009977 134 --LNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKH 211 (521)
Q Consensus 134 --~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 211 (521)
......+.+.|++++|++.|+++... .+.+..++..+..++...|++++|++.|+++++. .+.+...+..+...
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l 428 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 12345677889999999999998743 3445667788899999999999999999998753 23456677777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 212 HCKRGTLESAFEVLKEMKKSQMSY-------PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 212 ~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
|. .++.++|..+++.+....... .....+..+...+...|++++|++.|+++++.. +.+...+..+...|
T Consensus 429 ~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 429 YR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDL 505 (1157)
T ss_pred HH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 74 567899998887654322100 112345567788889999999999999998864 55677888899999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHH
Q 009977 285 CRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI---------GYTTLINCFC 355 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~ 355 (521)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999998764 4456666666777788999999999998765432222221 1234566788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHH
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (521)
..|+.++|+.+++. .+.+...+..+...+.+.|++++|+..|+++.+..+. +...+..++..+...|++++|++
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 89999999998872 1335667788999999999999999999999987544 67889999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C---CHHHHHHHHHHHHccCcHHHHHHHHHH
Q 009977 436 LLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFK--P---ESDSWALLVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 436 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (521)
.++.+.+ ..| +...+..+..++...|++++|..+++++++.... | +...+..+...+...|+.++|.+.|++
T Consensus 659 ~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 659 QLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998875 344 5666777888999999999999999999865311 1 224566678889999999999999999
Q ss_pred HHH
Q 009977 510 LVI 512 (521)
Q Consensus 510 m~~ 512 (521)
++.
T Consensus 737 Al~ 739 (1157)
T PRK11447 737 AMV 739 (1157)
T ss_pred HHh
Confidence 986
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-23 Score=219.26 Aligned_cols=443 Identities=12% Similarity=0.046 Sum_probs=282.5
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHH----------------HHHHHHHHhcCCchHHHHHHHHh
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATY----------------ATILDKLARYKKFEAVDAVLRQM 121 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~~ 121 (521)
+...+..++..+...|+.++|.+.++++.+.. |.+...+ ..+...+...|++++|.+.|+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34456677777888899999999998886554 2232222 23344677889999999999988
Q ss_pred hhccCCcCHHH-HHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC---
Q 009977 122 TYETCKFHEGI-FLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLR--- 197 (521)
Q Consensus 122 ~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 197 (521)
.+.+ +++... ...........|++++|++.|+++... .+.+......+...+...|+.++|+..++++.+...
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 8764 333321 111222233458888888888888642 344555677778888888888888888887643210
Q ss_pred --------------CC--------------CcHH----H-----------------HHHHHHHHHhcCChHHHHHHHHHH
Q 009977 198 --------------LK--------------PNTC----I-----------------FNILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 198 --------------~~--------------~~~~----~-----------------~~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
.. |+.. . .......+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 00 0000 0 011244566788899999999988
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH------------HHHHHHHHhCCCHHHHHHH
Q 009977 229 KKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTY------------NVLIDGFCRGGKVDRAKKI 296 (521)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~ 296 (521)
.+..+ .+...+..+..++.+.|++++|+..|++..+..+..+....+ ......+.+.|++++|+..
T Consensus 296 L~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 296 VRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88776 577888888888999999999999998888754322222211 1224456778888888888
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------------------
Q 009977 297 MEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT--------------------------- 349 (521)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--------------------------- 349 (521)
|+++++.. +.+...+..+..++...|++++|++.|+++.+.... +...+..
T Consensus 374 ~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 374 YQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 88888764 455667777888888888888888888887764221 1222222
Q ss_pred ---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCH
Q 009977 350 ---------------LINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNK 414 (521)
Q Consensus 350 ---------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 414 (521)
+...+...|++++|+..|++..+..+. +...+..+...|.+.|++++|...++++.+..+. +.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CH
Confidence 223345678888888888888876543 5566777888888888888888888887664322 22
Q ss_pred H--------------------------------------------------------------------------HHHHH
Q 009977 415 A--------------------------------------------------------------------------SYRIV 420 (521)
Q Consensus 415 ~--------------------------------------------------------------------------~~~~l 420 (521)
. .+..+
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~L 609 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHH
Confidence 1 12223
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 009977 421 LNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRK 499 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 499 (521)
...+.+.|++++|+..|+++++. .| +...+..++..+...|++++|...++.+.+.. +.+...+..+..++...|+
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCC
Confidence 33444555566666666655542 33 45555556666666666666666666555431 1223444555555666666
Q ss_pred HHHHHHHHHHHHHcC
Q 009977 500 LLFAFELLDELVIKE 514 (521)
Q Consensus 500 ~~~A~~~~~~m~~~~ 514 (521)
+++|.+++++++...
T Consensus 687 ~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 687 TAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHhhhC
Confidence 666666666666543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-24 Score=196.16 Aligned_cols=406 Identities=15% Similarity=0.116 Sum_probs=338.2
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH
Q 009977 67 SLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH 146 (521)
Q Consensus 67 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (521)
.++.+..+++.....-..+++.. +.-..+|..+...+...|++++|..+++.+++.. +-....|..+..++...|+.
T Consensus 90 ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~ 166 (966)
T KOG4626|consen 90 AIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDL 166 (966)
T ss_pred hhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCC
Confidence 34555566666665555554432 4557889999999999999999999999999886 55678999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHHhcCChHHHHHH
Q 009977 147 ERVLEMFHKIHPITREKPSL-KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-TCIFNILIKHHCKRGTLESAFEV 224 (521)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 224 (521)
+.|.+.|.+... ..|+. .+...+...+...|++.+|...|.++++ ..|. ..+|..|.-.+..+|+.-.|+.-
T Consensus 167 ~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~ 240 (966)
T KOG4626|consen 167 ELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQH 240 (966)
T ss_pred cccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHH
Confidence 999999988753 24443 3444566777789999999999998875 2343 55899999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 225 LKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
|++..+..+. -...|-.|+..|...+.+++|+..|.+..... +-....+..+...|...|..+.|+..|++.++..
T Consensus 241 y~eAvkldP~--f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 241 YEEAVKLDPN--FLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred HHHhhcCCCc--chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 9999998874 45678999999999999999999999998752 4557788889999999999999999999999875
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 009977 305 CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFN 383 (521)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (521)
+.-+..|+.|..++-..|+..+|++.+.+.... .|+ ..+.+.|...|...|.+++|..+|....+-.+. -...++
T Consensus 317 -P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~n 392 (966)
T KOG4626|consen 317 -PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHN 392 (966)
T ss_pred -CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhh
Confidence 445779999999999999999999999999874 344 778899999999999999999999999886433 356789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 009977 384 IILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKA 462 (521)
Q Consensus 384 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 462 (521)
.|...|-+.|++++|+..+++.++..+. -...|+.+...|-..|+.+.|++.+.+++ .+.| -.+.++.|...|...
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~rAI--~~nPt~AeAhsNLasi~kDs 469 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYTRAI--QINPTFAEAHSNLASIYKDS 469 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHHHHH--hcCcHHHHHHhhHHHHhhcc
Confidence 9999999999999999999999886332 35789999999999999999999999999 4677 456788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 009977 463 GMAEDAAIALFGLVEMGFKPES-DSWALLVELI 494 (521)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 494 (521)
|++.+|+.-|++.++. +||. ..|-.++.++
T Consensus 470 Gni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 470 GNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred CCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 9999999999999886 5665 5565555543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-22 Score=199.88 Aligned_cols=401 Identities=11% Similarity=0.002 Sum_probs=235.8
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHH
Q 009977 62 HGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFS 141 (521)
Q Consensus 62 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (521)
+......+.+.|++++|+..|++++.. .|+...|..+..+|.+.|++++|...++..++.+ +....++..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 445677888999999999999998754 5688889999999999999999999999999876 556778999999999
Q ss_pred ccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHH----------------
Q 009977 142 NCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIF---------------- 205 (521)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------- 205 (521)
..|++++|+..|..+....+ .+......++..+........+...++.- ....|.....
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~a~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLKKFAESKAKEILETK---PENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCHHHHHHHHHHccCCcchhhh
Confidence 99999999998876643211 11111111111111111111222222110 0001111100
Q ss_pred --------------HHHHHH---HHhcCChHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 206 --------------NILIKH---HCKRGTLESAFEVLKEMKKSQMS-YPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 206 --------------~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
..+... ....+++++|.+.|++....+.. ......|..++..+...|++++|+..|++.+..
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 001000 01234566666666666654311 123445666666666666666666666666654
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 009977 268 DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGY 347 (521)
Q Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 347 (521)
. +.....|..+...+...|++++|...|+.+++.. +.+..++..++..+...|++++|...|++..+... .+...+
T Consensus 361 ~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~ 436 (615)
T TIGR00990 361 D--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSH 436 (615)
T ss_pred C--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHH
Confidence 2 2334456666666666666666666666666553 44455666666666666666666666666665321 134555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHH------HHHHHH
Q 009977 348 TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKA------SYRIVL 421 (521)
Q Consensus 348 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~ 421 (521)
..+...+.+.|++++|+..|++..+..+. +...++.+...+...|++++|.+.|++........+.. .++..+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 55666666666666666666666654322 45566666666666666666666666666543221111 111112
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 422 NFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..+...|++++|..+++++++. .| +...+..+...+.+.|++++|...|++..+.
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2223346666666666666543 34 3334556666666666666666666666554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-21 Score=198.21 Aligned_cols=405 Identities=12% Similarity=0.024 Sum_probs=257.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh
Q 009977 99 ATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE 178 (521)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 178 (521)
.-.+.+....|+.++|++++.+..... +.....+..+...+...|++++|++.|++.... .+.+...+..++.++..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 344445556777777777777776532 344555677777777777777777777776532 23445556666667777
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009977 179 SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAI 258 (521)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 258 (521)
.|++++|...++++++. .+.+.. +..+..++...|+.++|+..++++.+..| .+...+..++.++...|..++|+
T Consensus 96 ~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P--~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 96 AGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP--QTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCChHHHH
Confidence 77777777777777643 333455 77777777777777778777777777665 45556666677777777777777
Q ss_pred HHHHHHHhcCCCCCCH------HHHHHHHHHHH-----hCCCH---HHHHHHHHHHHHc-CCCCCcc-hHH----HHHHH
Q 009977 259 ELFEEMVSKDQILPDA------LTYNVLIDGFC-----RGGKV---DRAKKIMEFMKNN-GCNPNVF-NYT----TLMNG 318 (521)
Q Consensus 259 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~ 318 (521)
+.++.+.. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..
T Consensus 171 ~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 171 GAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 77765542 1211 01111222221 11223 6677777777753 1122221 111 11233
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhHHHHHHHHHHhcCC
Q 009977 319 FCKEGKLQEAKEVFDEMKNFLLK-PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA---DIVTFNIILGGLCREGK 394 (521)
Q Consensus 319 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 394 (521)
+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 45667888888888887765422 321 12224567778888888888888876653221 12345556667778888
Q ss_pred HHHHHHHHHHHHHCCC-----------ccC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 395 IEEALGMLEKLWYDGI-----------YLN---KASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 395 ~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
+++|..+++.+....+ .|+ ...+..+...+...|+.++|++.++++... .+.+...+..++..+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 8888888887776521 122 123455666777888888888888888753 2336777778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCcc
Q 009977 461 KAGMAEDAAIALFGLVEMGFKPE-SDSWALLVELICRGRKLLFAFELLDELVIKESGTIQ 519 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 519 (521)
..|++++|+..++++++.. |+ ...+...+..+.+.|++++|..+++++++..|++..
T Consensus 405 ~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred hcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 8888888888888887763 44 466667777778888888888888888888777654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-22 Score=191.20 Aligned_cols=294 Identities=17% Similarity=0.147 Sum_probs=141.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhCC
Q 009977 211 HHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP--DALTYNVLIDGFCRGG 288 (521)
Q Consensus 211 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~ 288 (521)
.+...|++++|...|+++.+.++ .+..++..++..+...|++++|..+++.+.......+ ....+..++..|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33444555555555555554443 3344455555555555555555555555543211110 0123444455555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 009977 289 KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD----TIGYTTLINCFCRAGRVDEAL 364 (521)
Q Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~ 364 (521)
++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5555555555554432 23344455555555555555555555555544322211 112333444445555555555
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 365 ELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
..|+++.+.... +...+..++..+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 555555544321 233444555555555555555555555554322222334455555555555555555555555532
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCcHHHHHHHHHHHHH
Q 009977 445 FLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICR---GRKLLFAFELLDELVI 512 (521)
Q Consensus 445 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 512 (521)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++|..++++|.+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 344444455555555555555555555555543 3555555544444432 3355555555555554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-21 Score=193.64 Aligned_cols=361 Identities=12% Similarity=0.021 Sum_probs=270.5
Q ss_pred HHHhcCCchHHHHHHHHhhhcc--CCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCC
Q 009977 104 KLARYKKFEAVDAVLRQMTYET--CKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQ 181 (521)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (521)
.+.+..+|+..--++....+.. -..+..-...++..+.+.|++++|+.+++.+.. ..+-+...+..++.+....|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~ 91 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQ 91 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCC
Confidence 3456677776666665554331 112233445567777888999999999888863 334445566667777778999
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 182 VDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELF 261 (521)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 261 (521)
+++|...++++.+. .+.+...+..+...+...|++++|.+.++++....+ .+...+..++..+...|++++|...+
T Consensus 92 ~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P--~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 92 PDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS--GNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 99999999988752 344567888888999999999999999999888765 56778888888999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
+.+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..++..+...|++++|+..++++.+...
T Consensus 168 ~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p- 243 (656)
T PRK15174 168 RTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL- 243 (656)
T ss_pred HHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 8887653 2333344333 34778899999999998887764233444455567788889999999999998887532
Q ss_pred CCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHH
Q 009977 342 PDTIGYTTLINCFCRAGRVDE----ALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASY 417 (521)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 417 (521)
.+...+..+...+...|++++ |+..|+++.+..+. +...+..+...+...|++++|...++++....+. +...+
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~ 321 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 247777888888888998885 78889888887544 6778888899999999999999999998887543 56667
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 418 RIVLNFSCQKGELEKAIELLRLMLCRGFLPHY-ATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..+..++...|++++|+..++.+.+. .|+. ..+..+..++...|+.++|...|+++.+.
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77888888999999999999988854 4543 33444567788899999999999988875
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-22 Score=190.77 Aligned_cols=303 Identities=15% Similarity=0.128 Sum_probs=174.5
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--cHHHHHHHHHHHHhcC
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP--NTCIFNILIKHHCKRG 216 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 216 (521)
.+...|++++|+..|+++... .+.+..++..+...+...|++++|..+++.+.......+ ....+..++..|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344445555555555555421 222333445555555555555555555555543211111 1234566666677777
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCCHHHH
Q 009977 217 TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD---ALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 293 (521)
++++|..+|+++.+..+ .+..++..++..+.+.|++++|++.++.+.+..+..+. ...+..++..+.+.|++++|
T Consensus 122 ~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 122 LLDRAEELFLQLVDEGD--FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 77777777777665543 45566666777777777777777777766654321111 12334555566666777777
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009977 294 KKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKER 373 (521)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 373 (521)
.+.++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777666543 33344556666666677777777777776665322212344566666666777777777777766665
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHH
Q 009977 374 GCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ---KGELEKAIELLRLMLCRGFLPHYA 450 (521)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~ 450 (521)
. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.++.|++.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 34444566666667777777777777666654 4555566655555443 346666777777666655555444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-20 Score=187.94 Aligned_cols=385 Identities=14% Similarity=0.086 Sum_probs=304.1
Q ss_pred HHHhcCChHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH
Q 009977 68 LIKCEKEPQCALEIFNTVSEQKG-FNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH 146 (521)
Q Consensus 68 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (521)
.+.++.+|+.---+|....+... -..+..-...++..+.+.|++++|..+++...... +-+...+..++......|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCH
Confidence 45677888887777766543211 11122334556778889999999999999999875 56677788888888899999
Q ss_pred HHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 147 ERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLK 226 (521)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 226 (521)
++|++.|+++... .+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|...++
T Consensus 93 ~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 93 DAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999743 3455667888899999999999999999999752 34457789999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 009977 227 EMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN 306 (521)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 306 (521)
.+....+. +...+..+ ..+...|++++|+..++.++...+ .++......+..++...|++++|+..++++.+.. +
T Consensus 169 ~~~~~~P~--~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p 243 (656)
T PRK15174 169 TQAQEVPP--RGDMIATC-LSFLNKSRLPEDHDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-L 243 (656)
T ss_pred HHHHhCCC--CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 98877663 44444444 347889999999999999877632 2334455666778899999999999999999875 5
Q ss_pred CCcchHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHH
Q 009977 307 PNVFNYTTLMNGFCKEGKLQE----AKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTF 382 (521)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 382 (521)
.+...+..+...+...|++++ |...|+++.+... .+...+..+...+...|++++|+..+++..+..+. +...+
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~ 321 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVR 321 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 677788899999999999986 8999999987532 25778899999999999999999999999987654 56678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009977 383 NIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKA 462 (521)
Q Consensus 383 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 462 (521)
..+..++...|++++|...++++...++. +...+..+..++...|+.++|...|+++.+. .|+.. .
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~--~P~~~-----------~ 387 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA--RASHL-----------P 387 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Chhhc-----------h
Confidence 88999999999999999999999886433 2334445567788999999999999999854 55432 3
Q ss_pred CCHHHHHHHHHHHHHC
Q 009977 463 GMAEDAAIALFGLVEM 478 (521)
Q Consensus 463 g~~~~a~~~~~~~~~~ 478 (521)
..+++|...+.+..+.
T Consensus 388 ~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 388 QSFEEGLLALDGQISA 403 (656)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4556788888877754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-19 Score=184.98 Aligned_cols=192 Identities=14% Similarity=0.014 Sum_probs=122.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 009977 320 CKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEAL 399 (521)
Q Consensus 320 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 399 (521)
...|++++|...|+++... .|+...+..+...+.+.|++++|...+++..+..+. +...+..+...+...|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHH
Confidence 4555566666655554432 233333444455555666666666666666554321 2222223333334457777777
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 400 GMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..+++..+. .|+...+..+..++.+.|++++|+..++++++. .| +...++.+..++...|++++|+..+++.++.
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777777765 345667777777777888888888888887743 45 5666677777777888888888888877765
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCcc
Q 009977 479 GFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTIQ 519 (521)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 519 (521)
. +-+...+..+..++...|++++|...++++++..|.+..
T Consensus 673 ~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 673 L-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 3 334567777888888888888888888888877776543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-20 Score=188.68 Aligned_cols=413 Identities=8% Similarity=0.016 Sum_probs=311.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccC
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (521)
.+.+....|+.++|++++..+.... +.+...+..+...+...|++++|..++++.++.. |.+...+..++..+...|
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 3455677899999999999985422 4566679999999999999999999999999875 566778888999999999
Q ss_pred cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 009977 145 LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEV 224 (521)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 224 (521)
++++|+..++++... .+.+.. +..+..++...|+.++|+..++++.+. .+.+...+..++.++...|..++|+..
T Consensus 98 ~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 98 QYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999998743 344445 778888999999999999999999863 344566777888899999999999999
Q ss_pred HHHHHhCCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhcCCCCCCHH-HH----HHHHHHHH
Q 009977 225 LKEMKKSQMSYPNL------ITYSTLIDGLC-----KNGRF---REAIELFEEMVSKDQILPDAL-TY----NVLIDGFC 285 (521)
Q Consensus 225 ~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~ 285 (521)
++.... . |+. .....++.... ..+++ ++|++.++.+.+.....|+.. .+ ...+.++.
T Consensus 173 l~~~~~-~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 173 IDDANL-T---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHhCCC-C---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 987664 2 221 11222222222 22334 778989998886422233321 11 11134556
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHH
Q 009977 286 RGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP---DTIGYTTLINCFCRAGRVDE 362 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 362 (521)
..|++++|+..|+.+.+.+.+........+...|...|++++|+..|+++.+..... .......+..++...|++++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 779999999999999987522111233336788999999999999999987643221 13456667778899999999
Q ss_pred HHHHHHHHHHcCC-----------CCc---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCC
Q 009977 363 ALELLKEMKERGC-----------KAD---IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKG 428 (521)
Q Consensus 363 A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (521)
|..+++.+.+..+ .|+ ...+..+...+...|+.++|+++++++....+. +...+..+...+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 9999999987632 122 234567788899999999999999999887544 6788889999999999
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009977 429 ELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELI 494 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (521)
++++|++.++++++ ..| +...+...+..+...|++++|..+++++++. .|+......+-..+
T Consensus 408 ~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 408 WPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999999995 456 5677777888889999999999999999986 56665544444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-19 Score=177.56 Aligned_cols=438 Identities=10% Similarity=0.030 Sum_probs=326.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHc
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNN--ATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN 142 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (521)
-+....++|+++.|++.|+++++.. |+. ..+ .++..+...|+.++|+.++++..... +.....+..++..|..
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~ 114 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHH
Confidence 3445678999999999999997653 443 234 78888888999999999999998322 3344455556778999
Q ss_pred cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHH
Q 009977 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAF 222 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 222 (521)
.|++++|+++|+++.+. .+.+...+..++..+...++.++|++.++.+.+ ..|+...+..++..+...++..+|+
T Consensus 115 ~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 115 EKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchHHHHH
Confidence 99999999999999743 344456677888899999999999999999864 4566666655666665677777799
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHh---------CCC--
Q 009977 223 EVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTY--NVLIDGFCR---------GGK-- 289 (521)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~---------~~~-- 289 (521)
+.++++.+..| .+...+..+..++.+.|-...|+++..+-... +.+....+ ...+.-.++ ..+
T Consensus 190 ~~~ekll~~~P--~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 190 QASSEAVRLAP--TSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 99999999887 57888888999999999999999887764322 22222111 000111111 112
Q ss_pred -HHHHHHHHHHHHHc-CCCCCc-chH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009977 290 -VDRAKKIMEFMKNN-GCNPNV-FNY----TTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE 362 (521)
Q Consensus 290 -~~~a~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (521)
.+.|+.-++.+... +-.|.. ..| .-.+-++...|++.++++.|+.+...+......+-..+..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 34455666665542 111321 222 23456678899999999999999987755345577888999999999999
Q ss_pred HHHHHHHHHHcCC-----CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------cc--CH-HHHHHHHHH
Q 009977 363 ALELLKEMKERGC-----KADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI-----------YL--NK-ASYRIVLNF 423 (521)
Q Consensus 363 A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~--~~-~~~~~l~~~ 423 (521)
|+.+++++..... .++......|..+|...+++++|..+++.+.+..+ .| |- ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 9999999976531 22333457889999999999999999999987422 12 22 234456777
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLF 502 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (521)
+...|++.+|++.++++.. ..| |......+...+...|.+.+|+..++...... +-+..+....+.++...|++++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHH
Confidence 8899999999999999985 355 89999999999999999999999997776652 3345777788899999999999
Q ss_pred HHHHHHHHHHcCccCcc
Q 009977 503 AFELLDELVIKESGTIQ 519 (521)
Q Consensus 503 A~~~~~~m~~~~~~~~~ 519 (521)
|..+.+.+.+..|++..
T Consensus 503 A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 503 MELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHhhCCCchh
Confidence 99999999998887653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-19 Score=176.45 Aligned_cols=374 Identities=13% Similarity=0.039 Sum_probs=278.2
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
|+...|..+..+|.+.|++++|++.++.+++.. +.+...|..+..++...|++++|..-|......+ +.+......+
T Consensus 158 p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~ 234 (615)
T TIGR00990 158 PDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIID-GFRNEQSAQA 234 (615)
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccHHHHHH
Confidence 556678888889999999999999999997654 4567789999999999999999998887665443 2222211122
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCH------------------------------hHHHHHHHHH---HhcCCHH
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSL------------------------------KAISTCLNLL---IESNQVD 183 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------------------~~~~~ll~~~---~~~~~~~ 183 (521)
+..+.......++...++.-. ...|.. ..+..+...+ ...++++
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~ 311 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKP---ENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE 311 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence 211111111122222221110 000100 0011111111 2246899
Q ss_pred HHHHHHHHhhhcCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 184 LAQNFLKYSNQHLRLKP-NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFE 262 (521)
Q Consensus 184 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 262 (521)
+|...|+.++......| ....++.+...+...|++++|+..|++.....+ .+...|..+...+...|++++|+..|+
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--~~~~~~~~la~~~~~~g~~~eA~~~~~ 389 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--RVTQSYIKRASMNLELGDPDKAEEDFD 389 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999876433334 456789999999999999999999999998776 467789999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 009977 263 EMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP 342 (521)
Q Consensus 263 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 342 (521)
++++.. +.+...+..+...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++..+.. ..
T Consensus 390 ~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~ 465 (615)
T TIGR00990 390 KALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PE 465 (615)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 998763 5567889999999999999999999999999875 5567788889999999999999999999988742 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHh------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHH
Q 009977 343 DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIV------TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKAS 416 (521)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 416 (521)
+...++.+...+...|++++|+..|++..+.....+.. .++..+..+...|++++|..++++....++. +...
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a 544 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIA 544 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHH
Confidence 47889999999999999999999999998764331111 1222223344579999999999999887543 5567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 417 YRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
+..+...+...|++++|+..|+++.+.
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 889999999999999999999999854
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-18 Score=173.30 Aligned_cols=429 Identities=11% Similarity=-0.028 Sum_probs=304.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-cCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLAR-YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC 143 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (521)
+...|.+.+++++|+.++.++.+.. +.+......+..+|.. .++ +++..+++. ....+...+..++..|.+.
T Consensus 188 ~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~ 260 (987)
T PRK09782 188 LLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYR 260 (987)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHC
Confidence 3677888899999999999886554 3445556666667766 366 666666443 2234667777888888888
Q ss_pred CcHHHHHHHHHhhccccCCCCCHhHHHH------------------------------HHHHHH----------------
Q 009977 144 SLHERVLEMFHKIHPITREKPSLKAIST------------------------------CLNLLI---------------- 177 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~------------------------------ll~~~~---------------- 177 (521)
|+.++|.+.++++.......|...++.. ++..+.
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP 340 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 8888888888887643333232222110 012222
Q ss_pred -----------------------------------------------hcCCHHHHHHHHHHhhh-cCCCCCcHHHHHHHH
Q 009977 178 -----------------------------------------------ESNQVDLAQNFLKYSNQ-HLRLKPNTCIFNILI 209 (521)
Q Consensus 178 -----------------------------------------------~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~ 209 (521)
+.|+.++|.++++.... .....++.....-++
T Consensus 341 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 341 ANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred cchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 23444555555554433 111112333444555
Q ss_pred HHHHhcCC---hHHHHHH-------------------------HHHHHhCCCCCC--CHHHHHHHHHHHHhcCChHHHHH
Q 009977 210 KHHCKRGT---LESAFEV-------------------------LKEMKKSQMSYP--NLITYSTLIDGLCKNGRFREAIE 259 (521)
Q Consensus 210 ~~~~~~g~---~~~A~~~-------------------------~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 259 (521)
..|.+.+. ..++..+ +.......+ + +...|..+..++.. ++.++|+.
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p--~~~~~~a~~~LG~~l~~-~~~~eAi~ 497 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS--PSYDAAAWNRLAKCYRD-TLPGVALY 497 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC--CCCCHHHHHHHHHHHHh-CCcHHHHH
Confidence 55555544 2222111 111111111 3 56677778877776 78889999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009977 260 LFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL 339 (521)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 339 (521)
.+.+.... .|+......+...+...|++++|...|+++... +|+...+..++..+.+.|++++|...++...+..
T Consensus 498 a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 498 AWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888765 355554445555667899999999999998664 4555567778889999999999999999998753
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHH
Q 009977 340 LKPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYR 418 (521)
Q Consensus 340 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 418 (521)
|+ ...+..+.......|++++|+..+++..+.. |+...+..+..++.+.|++++|...+++.....+. +...++
T Consensus 573 --P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~ 647 (987)
T PRK09782 573 --LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQA 647 (987)
T ss_pred --CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 33 3333344444556699999999999999874 46788999999999999999999999999998654 677888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc
Q 009977 419 IVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICR 496 (521)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 496 (521)
.+..++...|++++|+..++++++. .| +...+..+..++...|++++|...+++..+. .|+. .+.....+...+
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHH
Confidence 8999999999999999999999964 55 7788899999999999999999999999987 4555 666677888888
Q ss_pred cCcHHHHHHHHHHHHHcCccC
Q 009977 497 GRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 497 ~g~~~~A~~~~~~m~~~~~~~ 517 (521)
..+++.|.+-+++...-++.+
T Consensus 724 ~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 724 RFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHHHHHHHHHHhhcCccc
Confidence 999999999988887766554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-19 Score=169.41 Aligned_cols=451 Identities=12% Similarity=0.004 Sum_probs=272.8
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFN-HNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLM 137 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (521)
++..+.|...+.-.|+++.+.++...+....... .-..+|..+..++...|++++|..+|.+..+.+.....-.+..+.
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG 349 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence 3444455555555566666666665554322100 012335556666666666666666666655443111123344566
Q ss_pred HHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 138 KHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESN----QVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
..|...|+.+.+...|+++.. ..+.+..+...+...|...+ ..+.|..++.+..+. .+.|...|..+..++.
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k--~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLK--QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLE 425 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHH--hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHH
Confidence 666666666666666666642 22333344444444444443 345555555555432 2345556666655554
Q ss_pred hcCChHHHHHHHHHHH----hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CC------CCHHHHHHHH
Q 009977 214 KRGTLESAFEVLKEMK----KSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ--IL------PDALTYNVLI 281 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~------~~~~~~~~l~ 281 (521)
...-+.. +..|..+. ..+.. ......|.++..+...|++.+|...|......-. .. ++..+-..+.
T Consensus 426 ~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 426 QTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred hcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 4333322 44444322 22322 4555666666666666666666666666554300 01 1122233344
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVD 361 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (521)
..+-..++.+.|.+.|..+.+.. +.-+..|..++.+....+...+|...+..+... ...++..+..+...+.....+.
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhc
Confidence 44445556666666666666543 323334444443444445666666666666553 2334556666666777777777
Q ss_pred HHHHHHHHHHHc-CCCCcHhHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCC
Q 009977 362 EALELLKEMKER-GCKADIVTFNIILGGLCR------------EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKG 428 (521)
Q Consensus 362 ~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (521)
.|.+-|..+... ...+|.++...|...|.+ .+..+.|+++|.++++..+. |...-|.+...++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhcc
Confidence 777766655543 223466666667765543 24577899999998887655 7788888888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 009977 429 ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE-MGFKPESDSWALLVELICRGRKLLFAFELL 507 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 507 (521)
++.+|..+|....+.. .-...+|..+..+|..+|++..|+++|+...+ ....-+..+...|.+++.+.|++.+|.+.+
T Consensus 661 ~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred CchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999998764 33556777899999999999999999998875 343456688899999999999999999999
Q ss_pred HHHHHcCccCcc
Q 009977 508 DELVIKESGTIQ 519 (521)
Q Consensus 508 ~~m~~~~~~~~~ 519 (521)
..++...|.+..
T Consensus 740 l~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 740 LKARHLAPSNTS 751 (1018)
T ss_pred HHHHHhCCccch
Confidence 998888777654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-18 Score=162.22 Aligned_cols=443 Identities=15% Similarity=0.084 Sum_probs=333.8
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHN--NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
++-.+...|...|++++|..+|....+.. +| ...+..+++.+.+.|+.+.+...|+.+.... |....+...+..
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~---~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKAD---NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccC---CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHh
Confidence 45667888999999999999999885442 33 4556778999999999999999999999875 666778878888
Q ss_pred HHHccC----cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh---cCCCCCcHHHHHHHHHH
Q 009977 139 HFSNCS----LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQ---HLRLKPNTCIFNILIKH 211 (521)
Q Consensus 139 ~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~ 211 (521)
.|...+ ..++|..++.+.. ...+.+..+|..+...+....-+.. +..|..+.. ..+..+.+...|.++..
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~--~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVL--EQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHH--hcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 888775 5677888887776 3346677788887777665544333 666655431 22344778899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC-----CC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-HHHHHHHH
Q 009977 212 HCKRGTLESAFEVLKEMKKSQ-----MS---YPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA-LTYNVLID 282 (521)
Q Consensus 212 ~~~~g~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~ 282 (521)
+...|++++|...|+.....- .. .+++.+--.+...+-..++++.|.+.|..+.+.. |.. ..|..++.
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ 538 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLGC 538 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhhH
Confidence 999999999999999987651 10 0222234456777788899999999999999863 443 34445544
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh-----
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLL-KPDTIGYTTLINCFCR----- 356 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~----- 356 (521)
+....+...+|...++...+.. ..++.++..++..+.+...+..|.+-|..+.+... .+|..+.-.|...|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 4455678899999999998865 66788888888899999999999997777665322 2466666666665543
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC
Q 009977 357 -------AGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE 429 (521)
Q Consensus 357 -------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (521)
.+..++|+++|.+.+...+. |..+-|.+.-.++..|++.+|..+|.++.+.... ...+|..+.++|..+|+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHH
Confidence 24578899999999988765 7888889999999999999999999999987543 56789999999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH------H----------
Q 009977 430 LEKAIELLRLMLCR-GFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLV------E---------- 492 (521)
Q Consensus 430 ~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~------~---------- 492 (521)
+..|+++|+...+. .-..+..+...|.+++.+.|.+.+|.+.+...+...+......|+..+ .
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 99999999988865 334488999999999999999999999998877653222223333211 1
Q ss_pred --HHHccCcHHHHHHHHHHHHHcCcc
Q 009977 493 --LICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 493 --~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
.....+..+.|.++|..|...++-
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 112246677888999998877654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-17 Score=161.56 Aligned_cols=413 Identities=10% Similarity=0.055 Sum_probs=307.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC 143 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (521)
.++..+...|+.++|+.+++++. . .-+........++..+...|++++|.++|+++.+.. |.++..+..++..|...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~-~-p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ-S-SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc-c-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhc
Confidence 67788888899999999999986 2 112334444444678888999999999999999986 55677888889999999
Q ss_pred CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 009977 144 SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFE 223 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 223 (521)
++.++|++.++++.. ..|+...+..++..+...++..+|+..++++++. .+.+...+..+..++.+.|-...|.+
T Consensus 150 ~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 150 GRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred CCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999964 3555555555555555567776799999999863 34567788999999999999999998
Q ss_pred HHHHHHhCCCCCCCHHHH--HHHHHHHHh---------cCC---hHHHHHHHHHHHhcCCCCCCH-----HHHHHHHHHH
Q 009977 224 VLKEMKKSQMSYPNLITY--STLIDGLCK---------NGR---FREAIELFEEMVSKDQILPDA-----LTYNVLIDGF 284 (521)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~--~~l~~~~~~---------~g~---~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~ 284 (521)
+..+-...-- +....+ ...+.-.++ ..+ .+.|+.-++.+...-+..|.. ....-.+-++
T Consensus 225 l~~~~p~~f~--~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 225 LAKENPNLVS--AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HHHhCccccC--HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 8776432111 111111 001111111 122 345666666666532222322 2223455677
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCC
Q 009977 285 CRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLL-----KPDTIGYTTLINCFCRAGR 359 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~ 359 (521)
...|++.++++.|+.+...+.+....+-..++.+|...++.++|+.+++.+..... .++......|.-+|...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 88999999999999999988666667888999999999999999999999866431 2234445778899999999
Q ss_pred HHHHHHHHHHHHHcCC-------------CCcH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 360 VDEALELLKEMKERGC-------------KADI-VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
+++|..+++.+.+..+ .||- ..+..++..+...|++.+|++.++++....+. |......+...+.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~ 461 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 9999999999987422 1222 23345677788999999999999999887655 8889999999999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLV 491 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (521)
..|.+.+|++.++.+.. +.| +..+....+.++...|++++|..+.+.+.+. .|+......|-
T Consensus 462 ~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~ 524 (822)
T PRK14574 462 ARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELD 524 (822)
T ss_pred hcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHH
Confidence 99999999999977773 466 6677778888899999999999999998876 46665444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-16 Score=137.41 Aligned_cols=442 Identities=16% Similarity=0.134 Sum_probs=260.3
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHH----HHHHHHHHH
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGI----FLNLMKHFS 141 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~ 141 (521)
..-|..+....+|+..++-+.+..-|+.....--.+...+.+.+++.+|++.|+..+.+-...+..+ +..+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3345566778889888888765544544444444567788889999999999988876643333333 344555678
Q ss_pred ccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-----------CCcHHHHHHH--
Q 009977 142 NCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRL-----------KPNTCIFNIL-- 208 (521)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l-- 208 (521)
+.|++++|+..|+...+ ..|+..+-..++-++...|+.++..+.|.+++.-.+. .|+....+..
T Consensus 288 q~gqy~dainsfdh~m~---~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCME---EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred ecccchhhHhhHHHHHH---hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 89999999999999853 4788888777888888899999999999988753321 2333333322
Q ss_pred ---HHHHHhcCCh--HHHHHHHHHHHhCCCCCCCHHH---H------------------HHHHHHHHhcCChHHHHHHHH
Q 009977 209 ---IKHHCKRGTL--ESAFEVLKEMKKSQMSYPNLIT---Y------------------STLIDGLCKNGRFREAIELFE 262 (521)
Q Consensus 209 ---~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~---~------------------~~l~~~~~~~g~~~~A~~~~~ 262 (521)
+.-.-+.+.- ++++-.--++..--+. |+-.. | ..-..-+.++|+++.|+++++
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~-~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIA-PDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccc-cchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 2222222221 2222111122211111 22100 1 111334778999999999998
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 263 EMVSKDQILPDALTYNVLIDGFCR-GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 263 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
-+.+++.-..+...-|.-+--|.+ ..++..|.++-+..+... .-+......-.......|++++|.+.+++.......
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 887664332222222222222222 235667777666666543 334444444444555667777777777777653211
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 009977 342 PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVL 421 (521)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 421 (521)
- ......+.-.+-..|++++|++.|-.+...-. .+...+..+...|-...+...|++++.+.... +..|+..+.-|.
T Consensus 523 c-~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 C-TEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred H-HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 1 11111222235566777777777766543211 14555666666676667777777776665544 333566677777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCcH
Q 009977 422 NFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVE-LICRGRKL 500 (521)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~ 500 (521)
..|-+.|+-..|.+.+-+--.. ++.+..+...|..-|....-+++++.+|++..-. +|+..-|..++. ++.+.|++
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccH
Confidence 7777777777776665444321 3336666666666666666667777777665432 577766765553 33456777
Q ss_pred HHHHHHHHHHHHcCccCc
Q 009977 501 LFAFELLDELVIKESGTI 518 (521)
Q Consensus 501 ~~A~~~~~~m~~~~~~~~ 518 (521)
.+|+++++..-.+-|.++
T Consensus 677 qka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHHHHHHHhCccch
Confidence 777777777766665543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-15 Score=141.04 Aligned_cols=368 Identities=15% Similarity=0.121 Sum_probs=259.4
Q ss_pred HHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCC
Q 009977 102 LDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQ 181 (521)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 181 (521)
...+...|++++|..++.++++.. +....+|..|...|-+.|+.++++..+-..- .-.+.|...|..+.....+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhccc
Confidence 334455588899999998888876 6677888888888988898888888765554 2345566788888888888888
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHhcCChHHH
Q 009977 182 VDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITY----STLIDGLCKNGRFREA 257 (521)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A 257 (521)
++.|.-.|.++++. .+++...+-.-+..|-+.|+...|.+.|.++....++ .|..-. -.++..+...++-+.|
T Consensus 223 i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 223 INQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999888888763 4456666666778888889999999988888877652 232222 2345566677777888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------------------CCCCcc
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG---------------------------CNPNVF 310 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~ 310 (521)
++.++......+-..+...++.++..+.+...++.|......+.... ..++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 88888887754445556677888888888888888888877776511 112222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEMKNFL--LKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGG 388 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (521)
+ ..++-++...+..+....+........ +.-+...|.-+..+|...|++.+|+.+|..+.....--+...|..+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 123333444444444444444444433 3334677888888899999999999999988876544467788888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHH
Q 009977 389 LCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLML--------CRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~l~~~~~ 460 (521)
|...|.+++|.+.+++++...+. +...-..|...+.+.|+.++|.+.+..+. ..+..|+........+.+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 99999999999999988876432 44555667777888899999998888854 1234455555566667778
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009977 461 KAGMAEDAAIALFGLVE 477 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~ 477 (521)
..|+.++-......|+.
T Consensus 538 ~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVD 554 (895)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 88888776555555543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-13 Score=121.47 Aligned_cols=419 Identities=10% Similarity=0.053 Sum_probs=249.6
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHH
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLM 137 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (521)
+...|-.....-..+++.+.|.++|++++... ..+...|...+.+=.+......|..+++..+.. .|.-...|...+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHH
Confidence 34456666666667788888888888886443 456667777777777778888888888877765 244445666666
Q ss_pred HHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC
Q 009977 138 KHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT 217 (521)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 217 (521)
.+--..|+..-|.++|++.. .-.|+..+|.+.++.-.+.+.++.|..+++..+ -+.|++..|...++.-.++|+
T Consensus 149 ymEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCc
Confidence 66666777777777777764 347777777777777777777777777777765 355777777777777777777
Q ss_pred hHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----------------------------
Q 009977 218 LESAFEVLKEMKKSQM-SYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD---------------------------- 268 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------- 268 (521)
...|..+|....+.-. ...+...+.+...--..+..++.|.-+|+-.++.-
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 7777777776554321 01122223333332233344444444444443320
Q ss_pred --------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcc--hHHHH----HH----HHHhcCC
Q 009977 269 --------------QILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVF--NYTTL----MN----GFCKEGK 324 (521)
Q Consensus 269 --------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l----~~----~~~~~~~ 324 (521)
..+.|-.+|-..+..-...|+.+...++|++++..- +|-.. .|... ++ .-....+
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 113344455555555555666666666666666542 33211 01100 11 1123456
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 009977 325 LQEAKEVFDEMKNFLLKPDTIGYTT----LINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALG 400 (521)
Q Consensus 325 ~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 400 (521)
.+.+.++++...+. ++....++.- ......++.++..|.+++...+. .-|-..+|...|..-.+.++++.+..
T Consensus 382 ~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 382 VERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 66666666666552 2222333332 22333456666777776666553 34566667777777777777777777
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 401 MLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG-FLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
++++.++-++. +..+|......-...|+.+.|..+|.-++... ++.....|.+.|+.-...|.++.|..+++++++.
T Consensus 459 LYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r- 536 (677)
T KOG1915|consen 459 LYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR- 536 (677)
T ss_pred HHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh-
Confidence 77777776554 56666666666666777777777777776432 1223344555555556677777777777777765
Q ss_pred CCCCHHHHHHHHH
Q 009977 480 FKPESDSWALLVE 492 (521)
Q Consensus 480 ~~~~~~~~~~l~~ 492 (521)
.+...+|..++.
T Consensus 537 -t~h~kvWisFA~ 548 (677)
T KOG1915|consen 537 -TQHVKVWISFAK 548 (677)
T ss_pred -cccchHHHhHHH
Confidence 244445555543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-13 Score=125.95 Aligned_cols=433 Identities=11% Similarity=0.024 Sum_probs=246.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhh----hccCCcCHHHHHHHHHH
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMT----YETCKFHEGIFLNLMKH 139 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~ 139 (521)
-|-.+|.+..-|+.|..+++++. . .++.+...|.+-...=-..|+.+...+++++-+ ..|+..+...|..=...
T Consensus 411 dLwlAlarLetYenAkkvLNkaR-e-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAR-E-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-h-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 34455566666677777777662 2 356666666666655556666666666654432 22444444444444444
Q ss_pred HHccCcHHHHHHHHHhhcccc-----------------------------------CCCCCHhHHHHHHHHHHhcCCHHH
Q 009977 140 FSNCSLHERVLEMFHKIHPIT-----------------------------------REKPSLKAISTCLNLLIESNQVDL 184 (521)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~-----------------------------------~~~~~~~~~~~ll~~~~~~~~~~~ 184 (521)
+-..|..--+..+...+...+ ..+.+...|......--..|..++
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHH
Confidence 444444444444333332211 112222233333333334455555
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 185 AQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264 (521)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 264 (521)
...+++++.. ..+.....|...+..+...|+...|..++....+..+ .+...|..-+.....+.+++.|..+|.+.
T Consensus 569 l~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p--nseeiwlaavKle~en~e~eraR~llaka 644 (913)
T KOG0495|consen 569 LEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP--NSEEIWLAAVKLEFENDELERARDLLAKA 644 (913)
T ss_pred HHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--CcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 5555555543 2333444555555555566666666666666665554 35555666666666666666666666665
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 009977 265 VSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDT 344 (521)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 344 (521)
... .|+...|..-+...--.++.++|++++++.++. ++.-...|..+.+.+-+.++.+.|.+.|..-.+. +...+
T Consensus 645 r~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~i 719 (913)
T KOG0495|consen 645 RSI---SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSI 719 (913)
T ss_pred hcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCc
Confidence 432 344555544444444456666666666665554 1223345555566666666666666665544331 22234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS 424 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (521)
..|-.+...--+.|.+-.|..++++..-.++. +...|...+..-.+.|..+.|..+..++++.- +-+...|..-|...
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le 797 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLE 797 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhc
Confidence 45555555555566666666666666655544 55666666666666666666666666665542 22444555555554
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHH
Q 009977 425 CQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRGRKLLFA 503 (521)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 503 (521)
.+.++-......+++ ..-|+.++..+...+....+++.|...|.+.++.+ ||. .+|..+...+.++|.-++-
T Consensus 798 ~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred cCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHH
Confidence 444443333332222 34466667777888888888999999999888764 444 8888888888899988888
Q ss_pred HHHHHHHHHcCcc
Q 009977 504 FELLDELVIKESG 516 (521)
Q Consensus 504 ~~~~~~m~~~~~~ 516 (521)
.+++++.....|.
T Consensus 871 kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 871 KEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHhccCCC
Confidence 8888888776553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-14 Score=134.19 Aligned_cols=330 Identities=14% Similarity=0.102 Sum_probs=191.3
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHH
Q 009977 68 LIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHE 147 (521)
Q Consensus 68 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (521)
.+...|+.++|.+++.+++++. +.+...|.+|..+|-..|+.+++...+-.....+ |-+...|..+.....+.|.++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 3445588888888888887775 5667778888888888888887777666555544 556677777888888888888
Q ss_pred HHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHH----HHHHHHHHHHhcCChHHHHH
Q 009977 148 RVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTC----IFNILIKHHCKRGTLESAFE 223 (521)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~ 223 (521)
+|.-.|.+.. ...+++...+..-...|-+.|+...|..-+.++.+..+ +.|.. .--..++.+...++-+.|.+
T Consensus 225 qA~~cy~rAI--~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 225 QARYCYSRAI--QANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHH--hcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888776 33455566666667777788888888877777765311 11222 22233555666677777777
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--------------------------CCCCCHHHH
Q 009977 224 VLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD--------------------------QILPDALTY 277 (521)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~ 277 (521)
.++.....+....+...++.++..+.+...++.|........... +..++...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 777766633333455566677777777777777777666655410 01111111
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009977 278 NVLIDGFCRGGKVDRAKKIMEFMKNNG--CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFC 355 (521)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 355 (521)
..++-++.+....+....+.....+.. ..-+...|.-+..+|...|.+..|+.+|..+......-+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 011122222333333333333333333 222334455555555555666666665555554333333455555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKL 405 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 405 (521)
..|.+++|...|+..+...+. +...-..|...+.+.|+.++|.+.++.+
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 555566666555555554322 3333444445555555555555555553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-13 Score=125.60 Aligned_cols=429 Identities=13% Similarity=0.047 Sum_probs=321.3
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHH
Q 009977 71 CEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVL 150 (521)
Q Consensus 71 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 150 (521)
..-+++.|+.++.++.+-. +.+...|. +|++...++.|..++++..+. +|-+..+|......--.+|..+.+.
T Consensus 388 elE~~~darilL~rAvecc--p~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC--PQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred hccChHHHHHHHHHHHHhc--cchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHH
Confidence 3456677999999986543 44444444 556677889999999999875 6888899999888888999999998
Q ss_pred HHHHhhcc---ccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--cHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 151 EMFHKIHP---ITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP--NTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 151 ~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
+++.+-.. ..+...+...|..=...|-..|..-.+..+....+.- |+.. -..+|+.-...|.+.+.++-|..+|
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 88776421 1445667777777777888888888888888777632 3332 2458888889999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 009977 226 KEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGC 305 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (521)
....+..+ .+...|......--..|..++-..+|+++... .+-....|.....-+-..|+...|..++.++.+..
T Consensus 540 a~alqvfp--~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~- 614 (913)
T KOG0495|consen 540 AHALQVFP--CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN- 614 (913)
T ss_pred HHHHhhcc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-
Confidence 98888766 46677877777777788888888899888875 34555666666777777899999999998888875
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHH
Q 009977 306 NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNII 385 (521)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 385 (521)
+.+...|..-+...+...+++.|..+|.+... ..|+...|.--+...--.++.++|++++++.++.-+. -...|..+
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lml 691 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLML 691 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHH
Confidence 55777888888888888899999999988776 4566777766666666678889999988888876322 34567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (521)
.+.+-+.++.+.|.+.|..-.+. .+-.+..|..+...--+.|.+-+|..++++..-++ +-+...|...+++-.+.|..
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNK 769 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCH
Confidence 88888888888888877665554 22245567777777777788888888888877542 23677778888888888888
Q ss_pred HHHHHHHHHHHHC----C-------------------------CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 466 EDAAIALFGLVEM----G-------------------------FKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 466 ~~a~~~~~~~~~~----~-------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
+.|..+..++++. | ...|..+...+...+....++++|++.|++.+..+|+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 8887777665531 1 0234455666777888889999999999999998876
Q ss_pred C
Q 009977 517 T 517 (521)
Q Consensus 517 ~ 517 (521)
.
T Consensus 850 ~ 850 (913)
T KOG0495|consen 850 N 850 (913)
T ss_pred c
Confidence 3
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-13 Score=119.02 Aligned_cols=408 Identities=11% Similarity=0.063 Sum_probs=271.6
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCH-hHHH
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSL-KAIS 170 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 170 (521)
..+...|-...+.=..++++..|..+|+..+.-+ ..+...|...+.+-.++.....|..++++... .-|-. ..|-
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWy 145 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWY 145 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHH
Confidence 3466778888888888899999999999999776 45666788888888889999999999998753 23332 3444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009977 171 TCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK 250 (521)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (521)
-.+..--..|++..|.++|+.-+ ...|+..+|++.+..-.+.+.++.|..++++..-. +|++.+|......-.+
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEK 219 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHh
Confidence 45555566899999999999887 58899999999999999999999999999998754 3899999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------------------
Q 009977 251 NGRFREAIELFEEMVSKDQI-LPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG------------------------- 304 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------- 304 (521)
.|+...|..+|+.+.+.-+. .-+...+.+....-.++..++.|.-+|+-.++.-
T Consensus 220 ~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhh
Confidence 99999999999988775321 1122334444443344555666665555544431
Q ss_pred ------------------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH--------HHh
Q 009977 305 ------------------CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD--TIGYTTLINC--------FCR 356 (521)
Q Consensus 305 ------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~--------~~~ 356 (521)
-+.|-.+|...+..-...|+.+...++|+++... ++|- ...|.-.+-. -..
T Consensus 300 Ed~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445555555555666777777777666652 2331 1122211111 123
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHH
Q 009977 357 AGRVDEALELLKEMKERGCKADIVTFNII----LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEK 432 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (521)
..+.+.+.++++..++. ++....||..+ ..-..++.++..|.+++-.+. |..|-..+|...|..-.+.++++.
T Consensus 379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDR 455 (677)
T ss_pred hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHH
Confidence 56666677777666653 11123333332 233345566677777666554 445666777777777777777777
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 009977 433 AIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGF-KPESDSWALLVELICRGRKLLFAFELLDEL 510 (521)
Q Consensus 433 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 510 (521)
+..++++.++. .| +-.+|......-...|+.+.|..+|+-+++... .-....|...|+.-...|.++.|..+++++
T Consensus 456 cRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 456 CRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 77777777753 44 556666666666677777777777776665321 111234555555556677777777777777
Q ss_pred HHcCc
Q 009977 511 VIKES 515 (521)
Q Consensus 511 ~~~~~ 515 (521)
++...
T Consensus 534 L~rt~ 538 (677)
T KOG1915|consen 534 LDRTQ 538 (677)
T ss_pred HHhcc
Confidence 76543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-15 Score=129.74 Aligned_cols=421 Identities=15% Similarity=0.089 Sum_probs=291.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC-CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHc
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQK-GFNHN--NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN 142 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (521)
...+.+..++.+|++++.-++.+- .+..+ ....+.+...+.+.|+++.|..-|+...+.. |+-.+-..|+-++.-
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFA 321 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhhee
Confidence 345667778999999999876542 12222 2345566667889999999999999998774 676777778888888
Q ss_pred cCcHHHHHHHHHhhccccCC-----------CCCHhHHHHHH-----HHHHhcCC--HHHHHHHHHHhhhcCCCCCcHH-
Q 009977 143 CSLHERVLEMFHKIHPITRE-----------KPSLKAISTCL-----NLLIESNQ--VDLAQNFLKYSNQHLRLKPNTC- 203 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~ll-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~- 203 (521)
.|+.++..+.|.++....+. .|+...++..+ +-+.+.++ .+++.-.--+++ ..-+.|+..
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii-apvi~~~fa~ 400 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII-APVIAPDFAA 400 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh-ccccccchhc
Confidence 89999999999988643221 23333333322 22222221 122221111111 112233211
Q ss_pred ------------HH--------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCChHHHHHHH
Q 009977 204 ------------IF--------NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK--NGRFREAIELF 261 (521)
Q Consensus 204 ------------~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~ 261 (521)
.+ ..-...|.+.|+++.|.++++-..+.... .....-+.|-..+.. -.++..|.++-
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk-~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNK-TASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccch-hhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 00 11233577899999999999988776543 222223333333322 34688888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
+..+..+ .-+......-.+.....|++++|.+.|++.+... ..-......+.-.+-..|++++|++.|-++... +.
T Consensus 480 d~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~ 555 (840)
T KOG2003|consen 480 DIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LL 555 (840)
T ss_pred HHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HH
Confidence 7776654 2344444444455566899999999999998764 223334445566678899999999999876542 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 009977 342 PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVL 421 (521)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 421 (521)
.+......+...|-...+..+|++++.+.... ++.|+..+..|...|-+.|+-..|++.+-.--+. +.-+..+...|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHH
Confidence 46777778888999999999999999887655 3447888999999999999999999887665443 344788888999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 009977 422 NFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRL-CKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRK 499 (521)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 499 (521)
..|....-+++++.+|+++. -+.|+..-|..++..| .+.|+++.|..+|++.... ++.+..++.-|++.+...|-
T Consensus 634 ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999999999999987 4799999998887765 5789999999999988753 46778899989888776654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-13 Score=117.50 Aligned_cols=325 Identities=15% Similarity=0.206 Sum_probs=145.6
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HhcCCchHH-HHHHHHhhhccCCcCHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKL--ARYKKFEAV-DAVLRQMTYETCKFHEGIFLN 135 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ 135 (521)
+++-|.++... .++..+++.-+++.| ++.|.+-+...-..|+..- ....++.-| ++.|-.|...| ..+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m-~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERM-RSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHH-HhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 44566666653 456777788888887 5556666665554554432 222222222 22333333322 1111111
Q ss_pred HHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc
Q 009977 136 LMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR 215 (521)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (521)
+.|+..+ -+|+.. +.+..++..+|.++++.-..+.|.+++++.... ..+.+..++|.+|.+-.-
T Consensus 191 ------K~G~vAd--L~~E~~------PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~- 254 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETL------PKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY- 254 (625)
T ss_pred ------ccccHHH--HHHhhc------CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh-
Confidence 1222222 112111 333445555555555555555555555544322 334445555555443321
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH
Q 009977 216 GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA----IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVD 291 (521)
Q Consensus 216 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 291 (521)
..-.++..+|...... ||..|+|+++.+..+.|+++.| .+++.+|.+. |+.|...+|..+|..+++-++..
T Consensus 255 ---~~~K~Lv~EMisqkm~-Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei-GVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 255 ---SVGKKLVAEMISQKMT-PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred ---hccHHHHHHHHHhhcC-CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh-CCCcchhhHHHHHHHhcccCCch
Confidence 1114445555544443 5555555555555555544432 3334444443 45555555555555555544442
Q ss_pred H-HHHHHHHHHH----cCC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHH
Q 009977 292 R-AKKIMEFMKN----NGC----NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL----LKPD---TIGYTTLINCFC 355 (521)
Q Consensus 292 ~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~ 355 (521)
+ +..++..+.. +.+ +.+...|...+..|.+..+.+-|.++..-..... +.|+ ..-|..+....+
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 2 2222222221 111 1122233344445555555555555444332210 1111 122334444445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDG 409 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 409 (521)
+....+.-+..|+.|.-.-+.|+..+...++++....|.++-.-+++..+...|
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 555555555555555544444555555555555555555554444444444433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-13 Score=121.86 Aligned_cols=366 Identities=13% Similarity=0.034 Sum_probs=207.8
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--cHHH
Q 009977 127 KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP--NTCI 204 (521)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 204 (521)
..|...+......+.+.|....|++.|.... ...+..+.+|..+.... -+.+.+..+.. +.+. ....
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v--~~~P~~W~AWleL~~li---t~~e~~~~l~~------~l~~~~h~M~ 229 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVV--NRYPWFWSAWLELSELI---TDIEILSILVV------GLPSDMHWMK 229 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHH--hcCCcchHHHHHHHHhh---chHHHHHHHHh------cCcccchHHH
Confidence 3444444455555666777777777776654 22344444444443322 22222222221 1121 1222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP-DALTYNVLIDG 283 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~ 283 (521)
--.+..++-...+.++++.-.......|.+ .+...-+....+.....++++|+..|+++.+.++... |..+|..++-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~-~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY- 307 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFP-NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY- 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH-
Confidence 223445555555667777666666666653 3333334444455566677777777777766543222 3445555542
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEA 363 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 363 (521)
.+..+..-+ -+-....+.+ +-.+.|...+++.|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|
T Consensus 308 -v~~~~skLs-~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 308 -VKNDKSKLS-YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred -HHhhhHHHH-HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHH
Confidence 222221111 1111111111 334456666677777777777777777777764322 356677777777777777777
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 364 LELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
++-++...+..+. |-..|-.+.++|.-.+...-|+-+|+++....+. |...|..|..+|.+.++.++|++.|..+...
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7777777776544 6667777777777777777777777777665433 6677777777777777777777777777754
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 444 GFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE----MG-FKP-ESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 444 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
| +.+...+..|...|.+.++..+|...|++.++ .| +.| ......-|..-+.+.+++++|..+......
T Consensus 462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 3 33556667777777777777777777766554 12 122 112233344555667777776665554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-13 Score=121.46 Aligned_cols=367 Identities=11% Similarity=0.034 Sum_probs=259.3
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHH
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIST 171 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (521)
..|...+......+.+.|....|...|...... .|....+|..|...... .+.+..+...+. .......=..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit~---~e~~~~l~~~l~----~~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELITD---IEILSILVVGLP----SDMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhch---HHHHHHHHhcCc----ccchHHHHHH
Confidence 345555555555666778888888888777765 35667777766665433 222222211111 0111112223
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHh
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMS-YPNLITYSTLIDGLCK 250 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 250 (521)
+..++....+.+++..-.+.+... |++-+...-+..+.+.....++|+|+.+|+++.+..|- ..|..+|..++ |.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 456666677888888777766543 66666666666677778889999999999999987652 23667787777 444
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 009977 251 NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (521)
+.+..-+. +-+.....+...| .|+..+.+.|.-.++.++|...|++.++.+ +....+|+.++.-|....+...|.+
T Consensus 310 ~~~skLs~-LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKSKLSY-LAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhHHHHH-HHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 33322211 1122222333444 578888898999999999999999999886 5667789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009977 331 VFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI 410 (521)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 410 (521)
-++.+.+.. +.|-..|-.+.++|.-.+.+.-|+-+|++.....+. |...|.+|...|.+.++.++|++.|......|-
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999998854 347889999999999999999999999999887554 888999999999999999999999999988754
Q ss_pred ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 411 YLNKASYRIVLNFSCQKGELEKAIELLRLMLCR----G-FLP-HYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
. +...+..|...|-+.++..+|...|++-++. | +.| ......-|..-+.+.+++++|..+.....
T Consensus 464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 3 6678999999999999999999999887752 2 223 22222335556677888888777655444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-14 Score=121.86 Aligned_cols=291 Identities=16% Similarity=0.147 Sum_probs=223.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhCCCHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD--ALTYNVLIDGFCRGGKVDR 292 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 292 (521)
.++.++|.+.|-+|.+..+ .+..+..+|++.|-+.|..+.|+++.+.+.+..+.+-+ ......|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 5788999999999998665 56677788999999999999999999988876433222 2344566777888999999
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD----TIGYTTLINCFCRAGRVDEALELLK 368 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 368 (521)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+. ...|..+...+....+++.|..+++
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998866 45566788899999999999999999998887665544 2446667777777889999999999
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 009977 369 EMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH 448 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 448 (521)
+..+.+.+ ...+--.+...+...|+++.|.+.++.+.+.++.--+.+...|..+|.+.|+.++....+.++.+. .+.
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g 281 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTG 281 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCC
Confidence 99887654 555666788889999999999999999999877666778888999999999999999999999865 333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCcHHHHHHHHHHHHHc
Q 009977 449 YATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICR---GRKLLFAFELLDELVIK 513 (521)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~ 513 (521)
...-..+...-....-.+.|...+.+-+.. .|+...+..+++.-.. .|...+....++.|+..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 344444444444444456666666555544 6999888888876553 45677778888887753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.5e-18 Score=151.14 Aligned_cols=260 Identities=12% Similarity=0.112 Sum_probs=66.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
...+.+.|++++|+++++........+.|...|..+.......++++.|.+.++++...+ +.+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445556666666666664432221112334444445555555666666666666666554 2234444445544 45566
Q ss_pred HHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 146 HERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
+++|.++++...+ ..+++..+..++..+...++++++..+++.+......+.+...|..++..+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYE---RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccc---cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666554421 1233344444555555555555555555554433223344445555555555555555555555
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 009977 226 KEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGC 305 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (521)
++..+..| .|......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..++++..+..
T Consensus 170 ~~al~~~P--~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 170 RKALELDP--DDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH-T--T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 55555443 244445555555555555555555555444331 2333344455555555555555555555555433
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 306 NPNVFNYTTLMNGFCKEGKLQEAKEVFDEM 335 (521)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 335 (521)
+.|+.+...++.++...|+.++|.++.+++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 334445555555555555555555554443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-12 Score=114.55 Aligned_cols=324 Identities=20% Similarity=0.250 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHH--HHccCcHHHH-HHHHHhhccccCCCCCHhHHHHH
Q 009977 96 ATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKH--FSNCSLHERV-LEMFHKIHPITREKPSLKAISTC 172 (521)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~~l 172 (521)
.+=+.|+.. ...|....+.-+|+.|.+.|++.++..-..+++. |....+.--| .+.|-.|...+. .+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E--~S~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE--DSTSSW--- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc--cccccc---
Confidence 445555554 4578999999999999999999888877777664 3333333222 234544543221 121222
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
+.|++.+ -+++ ..+....++..+|.++++--+.+.|.+++++....... .+..++|.+|.+-.-
T Consensus 191 -----K~G~vAd--L~~E------~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~-- 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFE------TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSY-- 254 (625)
T ss_pred -----ccccHHH--HHHh------hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHh--
Confidence 2343333 2333 23446779999999999999999999999998876664 788999998866433
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHH----HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHH-
Q 009977 253 RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDR----AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQE- 327 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 327 (521)
....+++.+|... ...||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+
T Consensus 255 --~~~K~Lv~EMisq-km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 255 --SVGKKLVAEMISQ-KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred --hccHHHHHHHHHh-hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 2337789999887 699999999999999999998765 56788899999999999999999999999888754
Q ss_pred HHHHHHHHHh----CCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCc---HhHHHHHHHHHHhc
Q 009977 328 AKEVFDEMKN----FLLK---P-DTIGYTTLINCFCRAGRVDEALELLKEMKERG----CKAD---IVTFNIILGGLCRE 392 (521)
Q Consensus 328 A~~~~~~~~~----~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~ 392 (521)
|..++.++.. ...+ | |...|...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....++.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444432 2222 3 35556667778888889988888766544221 2222 23456677788888
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 393 GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 393 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
...+.-..+++.|.-.-..|+..+...++++..-.|.++-.-++|..++..|
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 8899999999999887777888888888888877888777777777766654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-14 Score=132.28 Aligned_cols=284 Identities=10% Similarity=0.049 Sum_probs=200.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH--HHHHHHHhCCCHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYN--VLIDGFCRGGKVDR 292 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 292 (521)
.|+++.|.+.+....+... .....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHH
Confidence 6888888877776555322 11223333344557788888888888888654 34443222 33566777888888
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDT-------IGYTTLINCFCRAGRVDEALE 365 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~ 365 (521)
|.+.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888887775 556777778888888888888888888888776544222 123333333344455566666
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 009977 366 LLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGF 445 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (521)
+++.+.+.- +.+......+...+...|+.++|.+.+++..+. .+++... ++.+....++.+++++..+...+.
T Consensus 251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--
Confidence 666664432 236777888888999999999999999888874 3444322 233334558899999999888854
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 009977 446 LP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 446 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
.| |+..+..+...|.+.|++++|...|+.+.+. .|+...+..+..++.+.|+.++|.+++++.+.-
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44 6667788889999999999999999988876 688888888999999999999999999988664
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-14 Score=126.98 Aligned_cols=398 Identities=13% Similarity=0.033 Sum_probs=200.3
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 62 HGAAISLIKCEKEPQCALEIFNTVSEQKGFNHN-NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 62 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
+....+-+.++|.+++|++++.+++.. .|| ++.|.....+|...|+|++..+---+.++.+ |.-..++..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 344556678899999999999999866 467 8889999999999999999988888887765 44456777778888
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh------
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCK------ 214 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 214 (521)
-..|++++|+.=..-.-- .+.-.+..+-..+=+.+-+.+. ..+.+-++. .+..+-|+....++....+..
T Consensus 194 E~lg~~~eal~D~tv~ci-~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~--nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCI-LEGFQNASIEPMAERVLKKQAM-KKAKEKLKE--NRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HhhccHHHHHHhhhHHHH-hhhcccchhHHHHHHHHHHHHH-HHHHHhhcc--cCCCCCCcHHHHHHHHhhccccccccc
Confidence 888999888754322210 1111111111111111111111 111111110 011223333333222222210
Q ss_pred ----------------------cCChHHHHHHHHHHHhCCCCC--CC---------HHHHHHHHHHHHhcCChHHHHHHH
Q 009977 215 ----------------------RGTLESAFEVLKEMKKSQMSY--PN---------LITYSTLIDGLCKNGRFREAIELF 261 (521)
Q Consensus 215 ----------------------~g~~~~A~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~~~g~~~~A~~~~ 261 (521)
...+..|.+.+.+-....... .+ ..+....+..+.-.|+.-.|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 011222222222211100000 01 111222222233355555666666
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
+..++... .+...|.-+..+|....+.++..+.|+...+.+ +.++.+|..-.+++.-.+++++|..=|++.... .
T Consensus 350 ~~~I~l~~--~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~ 424 (606)
T KOG0547|consen 350 DAAIKLDP--AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--D 424 (606)
T ss_pred HHHHhcCc--ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--C
Confidence 66555432 112224445555556666666666666665554 445555555555555566666666666655542 2
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCc-----cCHH
Q 009977 342 P-DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIY-----LNKA 415 (521)
Q Consensus 342 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~ 415 (521)
| +...|-.+..+..+.+++++++..|++..+.-+. -+..|+.....+...++++.|.+.|+...+.... .+..
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 2 2344444444455555666666666665554222 3455555566666666666666666655543111 0111
Q ss_pred H--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 416 S--YRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 416 ~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
. --.++.. .-.+++..|..+++++++ ++| ....+..|...-.+.|+.++|+++|++..
T Consensus 504 plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 504 PLVHKALLVL-QWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhhhHhhh-chhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 1111111 122555566666665553 344 33445555555556666666666665544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-14 Score=134.22 Aligned_cols=291 Identities=11% Similarity=0.010 Sum_probs=179.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhCCCH
Q 009977 213 CKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA--LTYNVLIDGFCRGGKV 290 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 290 (521)
...|+++.|.+.+.+..+..+ .....+-....+....|+++.|.+++.++.+. .|+. .........+...|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~--~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAA--EPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCH
Confidence 346777777777766655543 22333444556666677777777777776543 2332 2223345666667777
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH---HHhcCCHHHHHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYT-TLINC---FCRAGRVDEALEL 366 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~A~~~ 366 (521)
+.|...++.+.+.. |.+..+...+...+...|++++|.+.+..+.+.+.. +...+. ....+ +...+..+++.+.
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 77777777777664 445566667777777777777777777777765433 222221 11111 1222222333334
Q ss_pred HHHHHHcCCC---CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 367 LKEMKERGCK---ADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKAS-YRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 367 ~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
+..+.+..+. .+...+..++..+...|+.++|.+.+++..+..+...... ...........++.+.+.+.++...+
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 4444433221 2667777778888888888888888888877633211111 11111222345777888888888775
Q ss_pred CCCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 443 RGFLP-HY--ATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 443 ~~~~p-~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
. .| |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 44 44 566778888888899999999888544333368888888888888888998899888887643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-14 Score=132.42 Aligned_cols=293 Identities=11% Similarity=0.019 Sum_probs=183.9
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009977 177 IESNQVDLAQNFLKYSNQHLRLKPNT-CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFR 255 (521)
Q Consensus 177 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 255 (521)
...|+++.|.+.+....+ ..|++ ..+.....++.+.|+++.|.+.+.+..+..+. +...........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHH
Confidence 346777777777766543 23443 33444466677777777777777777654432 22233444466677777777
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHH-HHHHH---HHhcCCHHHHHHH
Q 009977 256 EAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYT-TLMNG---FCKEGKLQEAKEV 331 (521)
Q Consensus 256 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~A~~~ 331 (521)
.|...++.+.+.. |-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..+ ....+..+++.+.
T Consensus 171 ~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 171 AARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777653 445566777777777777777777777777776533 322221 11111 1222223333334
Q ss_pred HHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 332 FDEMKNFLL---KPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVT-FNIILGGLCREGKIEEALGMLEKLWY 407 (521)
Q Consensus 332 ~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 407 (521)
+..+.+... +.+...+..+...+...|+.++|.+++++..+..+...... ...........++.+.+.+.+++..+
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 444433221 12677777788888888888888888888887643321111 11122222335677788888888777
Q ss_pred CCCccCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 408 DGIYLNK--ASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 408 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
..+. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6333 44 566678888888889999999888544334578888888888888888998888888887653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-13 Score=130.19 Aligned_cols=285 Identities=12% Similarity=0.042 Sum_probs=168.2
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCcHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 179 SNQVDLAQNFLKYSNQHLRLKPNTCIF-NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
.|+++.|.+.+....+. .+++..+ ........+.|+++.|.+.+.++.+..+. ............+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~-~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADN-DQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHCCCHHHH
Confidence 46666666555544321 1222222 22234446667777777777766654431 1112222335566666777777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc-------chHHHHHHHHHhcCCHHHHHH
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNV-------FNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~ 330 (521)
...++++.+.. |-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777766542 445556666666677777777777777777665432211 122222333333344455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009977 331 VFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI 410 (521)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 410 (521)
+++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+..+
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 55554332 2335666677777777777777777777777664 233321 123333445777777777777776644
Q ss_pred ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 411 YLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 411 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
. |+..+..+...|.+.+++++|.+.|+.+.+ ..|+...+..+..++.+.|+.++|..++++.+.
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 566677777777777888888888877774 467777777777777778888887777776654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-14 Score=118.31 Aligned_cols=292 Identities=16% Similarity=0.168 Sum_probs=209.8
Q ss_pred cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc--HHHHHHHHHHHHhcCChHH
Q 009977 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN--TCIFNILIKHHCKRGTLES 220 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 220 (521)
..+.++|+++|-.|.+ ..+.+..+..++.+.|.+.|..|.|+++.+.+..+.+.+-+ ..+...|.+-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3556677777666652 33444455566677777777777777777777654333332 3356677888999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHH
Q 009977 221 AFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD---ALTYNVLIDGFCRGGKVDRAKKIM 297 (521)
Q Consensus 221 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 297 (521)
|.++|..+.+.+. .-......|+..|-...+|++|++.-+++.+.++-+-. ...|.-+...+....+.+.|..++
T Consensus 126 AE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999887654 45567778899999999999999999988776432222 234556666666778899999999
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009977 298 EFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA 377 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 377 (521)
.+..+.+ +..+.+--.+.+.+...|++++|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+...
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~-- 280 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT-- 280 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 9998876 5566666678889999999999999999998865444467778888999999999999999998887743
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHC
Q 009977 378 DIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ---KGELEKAIELLRLMLCR 443 (521)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 443 (521)
....-..+...-....-.+.|..++.+-... .|+...+..++..... .|...+.+..++.|+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3334444444444445566666666655554 6788888888886543 35567777788888743
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-15 Score=136.59 Aligned_cols=284 Identities=15% Similarity=0.067 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHH
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQIL-PDALTYNVLIDGFCRGGKVDRAKKI 296 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (521)
..+|...|..+..... ........++.+|...+++++|.++|+.+.+..+.. -+...|.+.+..+-+ +-++..
T Consensus 335 ~~~A~~~~~klp~h~~--nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHY--NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHhhHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3445555555333322 222333444555555555555555555554432211 123334433332211 111111
Q ss_pred H-HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009977 297 M-EFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP-DTIGYTTLINCFCRAGRVDEALELLKEMKERG 374 (521)
Q Consensus 297 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 374 (521)
+ +.+.+.. +..+.+|..++++|.-.++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 1 2222221 33444555555555555555555555555544 223 24444444444555555555555555544432
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 009977 375 CKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSN 453 (521)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~ 453 (521)
+. +-.+|..+...|.+.++++.|+-.|+++.+.++. +......+...+-+.|+.++|+++++++.. ++| |+..-.
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~ 561 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKY 561 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHH
Confidence 22 2333444455555555555555555555544333 334444444445555555555555555552 233 333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 454 ELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 454 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
.-+..+...+++++|...++++.+.- +.+...+..++..|.+.|+.+.|+.-|-=|.+-+|
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 34444445555555555555555431 22224444455555555555555555554444433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-17 Score=145.29 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHhcCCchHHHHHH
Q 009977 102 LDKLARYKKFEAVDAVL 118 (521)
Q Consensus 102 ~~~~~~~~~~~~a~~~~ 118 (521)
...+.+.|++++|.+++
T Consensus 15 A~~~~~~~~~~~Al~~L 31 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVL 31 (280)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 33333444444444444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-15 Score=134.89 Aligned_cols=288 Identities=16% Similarity=0.103 Sum_probs=220.8
Q ss_pred CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CcHHHHHHHHHHHHhcCChHHHH
Q 009977 144 SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLK-PNTCIFNILIKHHCKRGTLESAF 222 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 222 (521)
=+..+|+..|.+++. ...-+......+.++|.+.+++++|+++|+.+.+..... .+..+|.+.+-.+- + +-++
T Consensus 333 y~~~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVAL 406 (638)
T ss_pred HHHHHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHH
Confidence 356789999988653 233344777788999999999999999999886532222 24667777665442 2 2222
Q ss_pred H-HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 223 E-VLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 223 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
. +-+.+.+..+ ..+.+|..++.+|.-+++++.|++.|++.+..+ +-...+|+.+..-+.....+|+|...|+..+
T Consensus 407 s~Laq~Li~~~~--~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 407 SYLAQDLIDTDP--NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHhhCC--CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 2 3334444444 577899999999999999999999999998763 4478899999999999999999999999888
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhH
Q 009977 302 NNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVT 381 (521)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 381 (521)
... +-+-.+|.-++-.|.+.++++.|+-.|+++.+.++. +.+....+...+.+.|+.++|+.+++++...+.+ |+..
T Consensus 483 ~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 483 GVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred cCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 643 334456667888999999999999999999874432 4566677778888999999999999999888766 5555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 009977 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP 447 (521)
Q Consensus 382 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 447 (521)
--..+..+...+++++|+..++++.+.-+. +...+..+...|.+.|+.+.|+.-|--+.+ ++|
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldp 622 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD--LDP 622 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCC
Confidence 555677788889999999999999886322 556678888999999999999999988884 455
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-12 Score=114.07 Aligned_cols=440 Identities=13% Similarity=0.067 Sum_probs=311.6
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
-+..+..-+..+..+..|+-+-++.. ++.-|+..-..+.+++.-.|+++.|..++..-.-. ..+..+.......+
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~---~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVA---GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH---hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHH
Confidence 34455555666778888888877764 33455555566888888899999998887665332 35667777888889
Q ss_pred HccCcHHHHHHHHHhh----ccccCCCCC--------HhH----HH-------HHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 009977 141 SNCSLHERVLEMFHKI----HPITREKPS--------LKA----IS-------TCLNLLIESNQVDLAQNFLKYSNQHLR 197 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~----~~~~~~~~~--------~~~----~~-------~ll~~~~~~~~~~~a~~~~~~~~~~~~ 197 (521)
.+..++++|..++.+. ........+ ..- .+ .-..+|....+.++|...|.+++.
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~--- 169 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL--- 169 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh---
Confidence 9999999999998832 111111111 000 00 112455556677888888887753
Q ss_pred CCCcHHHH---HHHHHHHHhc-----------------CC-hHHHHHHHHHHHhCC------CC---------CCCHHHH
Q 009977 198 LKPNTCIF---NILIKHHCKR-----------------GT-LESAFEVLKEMKKSQ------MS---------YPNLITY 241 (521)
Q Consensus 198 ~~~~~~~~---~~l~~~~~~~-----------------g~-~~~A~~~~~~~~~~~------~~---------~~~~~~~ 241 (521)
.|+..+ ..++....-. +. .+.-..+|+-..... .. ..+....
T Consensus 170 --~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 170 --ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred --cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence 233332 2222222111 11 111111222110000 00 1233444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 009977 242 STLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321 (521)
Q Consensus 242 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (521)
.....-+...+++.+..++.+...+.+ ++....+..-|.++...|+..+-..+-.++.+.- |..+.+|..++-.|..
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 455566778899999999999999876 4555566667778899999888888888888774 6778899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 009977 322 EGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALG 400 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 400 (521)
.|..++|.+.|.+.... .|. ...|-.....|.-.|..|+|+..+..+-+.-.. ....+.-+..-|.+.++.+.|.+
T Consensus 325 i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred hcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999988763 333 578999999999999999999999887664211 22334456667888999999999
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 401 MLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR--GFLP----HYATSNELLVRLCKAGMAEDAAIALFG 474 (521)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (521)
+|.++....+. |+..++-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|..+|.+.+++++|+..+++
T Consensus 402 Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 99998876433 7778888877777889999999999988732 1111 345678899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 475 LVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
.+... +.+..++..++-.|...|+++.|.+.|++.+-..|.++
T Consensus 481 aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 481 ALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 98764 56778999999999999999999999999998887763
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-12 Score=110.77 Aligned_cols=285 Identities=13% Similarity=0.044 Sum_probs=171.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (521)
.|+|.+|.+...+-.+.+. .....|..-+.+--+.|+.+.+-.++.++-+.. -.++..............|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHH
Confidence 5666666666666555543 233444445555556666666666666665431 1233344445555556666666666
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 009977 295 KIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDT-------IGYTTLINCFCRAGRVDEALELL 367 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~ 367 (521)
.-.+++.+.+ +-++.+.....++|.+.|++.....++..+.+.+.-.+. .+|..++.-....+..+.-...+
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 6666666654 445556666666666666666666666666665544332 34555555544444455544555
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 009977 368 KEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP 447 (521)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 447 (521)
+..... .+-++..-..++.-+.+.|+.++|.++.++..+.+..|+ ... .-.+.+-++...-++..++..+. .+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 554433 122455556666777777777777777777777655443 111 12244566666666666666543 223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 448 HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
++..+..|...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|+..+|.+..++.+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4566777777777777777777777766655 5777777777777777777777777777655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8e-12 Score=109.02 Aligned_cols=287 Identities=16% Similarity=0.118 Sum_probs=184.5
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009977 179 SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAI 258 (521)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 258 (521)
.|++..|+++..+..+. +- -....|..-+.+.-+.|+.+.+-.++.+..+.... ++....-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~-~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhHH
Confidence 46666666666654322 11 12234445556666677777777777777665332 45555666666677777777777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc-------chHHHHHHHHHhcCCHHHHHHH
Q 009977 259 ELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNV-------FNYTTLMNGFCKEGKLQEAKEV 331 (521)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~ 331 (521)
.-+.++.+.. +..+........+|.+.|++.....++..+.+.|.-.+. .++..+++-....+..+.-...
T Consensus 174 ~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 174 ENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 7777776553 444566677777777777777777777777776644443 2344455544444555554455
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCc
Q 009977 332 FDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIY 411 (521)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 411 (521)
|+..... .+.++..-..++.-+.++|+.++|.++.++..+.+..|. ....-.+.+-++.+.-++..++-.+....
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 5554332 334556666677777788888888888888777766544 22223455666776666666666554332
Q ss_pred cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 412 LNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|..+.++.+..
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 557777788888888888888888887773 5778888888888888888888888887776643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-11 Score=106.10 Aligned_cols=425 Identities=12% Similarity=0.038 Sum_probs=270.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
+.-+..+.++..|+.+++... ..+-.....+-..+..++.+.|++++|...+.-+.+.. .++...+..+.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 455677889999999998763 22222223445557788899999999999999988765 5666778888888888899
Q ss_pred HHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 146 HERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
+.+|..+-.+.. .++-....+.....+.++-++-..+.+.+.. ...--.+|.......-.+++|++++
T Consensus 107 Y~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 107 YIEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999877653 3344455566677778888888877776632 2234455566666666789999999
Q ss_pred HHHHhCCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----
Q 009977 226 KEMKKSQMSYPNLITYST-LIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM---- 300 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---- 300 (521)
..+...++ +-...|. +.-+|.+..-++-+.+++.-.+.. ++.++...|..+....+.=+-..|.+-...+
T Consensus 175 krvL~dn~---ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~ 249 (557)
T KOG3785|consen 175 KRVLQDNP---EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI 249 (557)
T ss_pred HHHHhcCh---hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc
Confidence 99987664 3333333 445678888889898888888765 4555555555544444322211222222222
Q ss_pred ----------HHcCC------------CC-----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009977 301 ----------KNNGC------------NP-----NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINC 353 (521)
Q Consensus 301 ----------~~~~~------------~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 353 (521)
.++++ -| -+..-..|+-.|.+.++..+|..+.+++.. ..|-......++
T Consensus 250 ~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv-- 325 (557)
T KOG3785|consen 250 DQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV-- 325 (557)
T ss_pred cccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--
Confidence 11110 00 122334556667888999999888877542 122222222222
Q ss_pred HHhcC-------CHHHHHHHHHHHHHcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 354 FCRAG-------RVDEALELLKEMKERGCKADIV-TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 354 ~~~~~-------~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
++..| ...-|...|.-.-+.+..-|.. --.++...+.-..++++.+.++..+...-...|.. .-.+..+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF-NLNLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh-hhHHHHHHH
Confidence 22222 2344555555443333222221 22344555555667888888888887653332333 335778888
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRGRKLLFAF 504 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 504 (521)
..|.+.+|.++|-.+....++.+......|.++|.+.++++.|+.++-++-. +.+. .....++..|.+.+.+=-|.
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887444444444445677888999999999887644322 2333 33445557888999999999
Q ss_pred HHHHHHHHcCccC
Q 009977 505 ELLDELVIKESGT 517 (521)
Q Consensus 505 ~~~~~m~~~~~~~ 517 (521)
+.|+.+...+|.+
T Consensus 482 KAFd~lE~lDP~p 494 (557)
T KOG3785|consen 482 KAFDELEILDPTP 494 (557)
T ss_pred HhhhHHHccCCCc
Confidence 9999988877764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-10 Score=104.19 Aligned_cols=437 Identities=11% Similarity=0.101 Sum_probs=281.5
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
.|-..+..+..+++...-...|++++....+......|...+......+-++.+..++++.++.. +......+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 57777888889999999999999998776666667789999999999999999999999998653 33466778888
Q ss_pred HccCcHHHHHHHHHhhccccC-----CCCCHhHHHHHHHHHHhcCCHHH---HHHHHHHhhhcCCCCCc--HHHHHHHHH
Q 009977 141 SNCSLHERVLEMFHKIHPITR-----EKPSLKAISTCLNLLIESNQVDL---AQNFLKYSNQHLRLKPN--TCIFNILIK 210 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~--~~~~~~l~~ 210 (521)
...+++++|.+.+..+..... .+.+-..|..+.+..+++.+.-. ...+++..+. .-+| ...|+.|+.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFLWCSLAD 256 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHHHHHHHH
Confidence 999999999999988753211 13344556667676666554432 3345555443 2244 348999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----------------C------ChHHHHHHHHHHHhcC
Q 009977 211 HHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN----------------G------RFREAIELFEEMVSKD 268 (521)
Q Consensus 211 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~A~~~~~~~~~~~ 268 (521)
.|.+.|.+++|.++|++....-. .+.-+..+.++|+.- | +++-.+.-|+.+....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~---tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVM---TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhe---ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 99999999999999999876532 333344444443321 1 1233344455554432
Q ss_pred CC----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------cchHHHHHHHHHhcCCHHHHHHHH
Q 009977 269 QI----------LPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN------VFNYTTLMNGFCKEGKLQEAKEVF 332 (521)
Q Consensus 269 ~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~ 332 (521)
+. +.+...|..-+. +..|+..+-...|.++.+. +.|. ...|..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 11 222333333332 2346667777777777654 1222 235778888899999999999999
Q ss_pred HHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------cHhHHHHHHHHHHhc
Q 009977 333 DEMKNFLLKPD---TIGYTTLINCFCRAGRVDEALELLKEMKERGCKA-----------------DIVTFNIILGGLCRE 392 (521)
Q Consensus 333 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~ 392 (521)
++..+...+.- ..+|.....+-.+..+++.|+++.+......-.| +...|...+...-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99877543321 3556666667777888999998887765431111 223445555555566
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh---cCCHHHH
Q 009977 393 GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCK---AGMAEDA 468 (521)
Q Consensus 393 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~a 468 (521)
|-++....+++++....+. ++.........+-.+..++++.++|++-+..=-.| -...|+..+.-+.+ ....+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 7888888888888876554 44444444444556667788888887765432223 34556666555543 2357788
Q ss_pred HHHHHHHHHCCCCCCHH--HHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 469 AIALFGLVEMGFKPESD--SWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 469 ~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
..+|+++++ |.+|... .|......--+.|-...|+.+++++..
T Consensus 570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 888888887 4344431 222222222346777777777777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-11 Score=112.91 Aligned_cols=420 Identities=15% Similarity=0.108 Sum_probs=276.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHH
Q 009977 90 GFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAI 169 (521)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (521)
.+.-|...|..+.-++.+.|+++.+.+.|++....- --....|..+...|...|....|+.+++........+++...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 455678888888889999999999999999887543 3345678888888888999999999988776434334444455
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHhhhcCCCC---CcHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhCCCC
Q 009977 170 STCLNLLIE-SNQVDLAQNFLKYSNQHLRLK---PNTCIFNILIKHHCKR-----------GTLESAFEVLKEMKKSQMS 234 (521)
Q Consensus 170 ~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 234 (521)
......|.+ .+.+++++.+-.+++...+.. ..+..|..+.-+|... ....++++.+++..+.++.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 555555554 567777777776665422211 1234555555555421 1235678888888888875
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHH
Q 009977 235 YPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTT 314 (521)
Q Consensus 235 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 314 (521)
.|++..| +.--|+..++.+.|.+..++..+.+ -..+...|..+.-.+...+++.+|+.+.+...+.- ..|-.....
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 4544444 4445777889999999999998873 35677888888888888999999999988777542 122111112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---------------------CC-----CC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNF---------------------LL-----KP--DTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~---------------------~~-----~~--~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
-+..-...++.++|......+... |. .| ...++..+....... .+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhcccc
Confidence 222223355655555544433210 00 00 011222211111100 0000000
Q ss_pred HHHHHHcCCC--Cc------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 009977 367 LKEMKERGCK--AD------IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLR 438 (521)
Q Consensus 367 ~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (521)
.. +...... |+ ...|......+.+.+..++|.-.+.+..... ......|......+...|..++|.+.|.
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 00 1111111 22 1234556677888899999998888887653 2356667777777888999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 439 LMLCRGFLP-HYATSNELLVRLCKAGMAEDAAI--ALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 439 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
.+. .+.| ++.+..++..++.+.|+..-|.. ++..+++.+ +.+.+.|..+...+.+.|+.++|.+.|..+.+-..
T Consensus 709 ~Al--~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 709 VAL--ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHH--hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 988 4677 77888899999999998877777 999999886 45679999999999999999999999999999776
Q ss_pred cCccCC
Q 009977 516 GTIQVP 521 (521)
Q Consensus 516 ~~~~v~ 521 (521)
++.-.|
T Consensus 786 S~PV~p 791 (799)
T KOG4162|consen 786 SNPVLP 791 (799)
T ss_pred CCCccc
Confidence 655443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-11 Score=107.40 Aligned_cols=418 Identities=12% Similarity=0.043 Sum_probs=292.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhc--cCCcCHHH--------
Q 009977 63 GAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYE--TCKFHEGI-------- 132 (521)
Q Consensus 63 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~-------- 132 (521)
-.++.++.-.+++++|..+...- .. ...|.........++.+..++++|..++...... .+.-++..
T Consensus 53 ~~~aq~l~~~~~y~ra~~lit~~-~l--e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n 129 (611)
T KOG1173|consen 53 YWLAQVLYLGRQYERAAHLITTY-KL--EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELN 129 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHh-hh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccC
Confidence 34666777778888887777553 11 1457788888889999999999999999833111 11101111
Q ss_pred --H------------HHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh-----------------cC-
Q 009977 133 --F------------LNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE-----------------SN- 180 (521)
Q Consensus 133 --~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----------------~~- 180 (521)
. ..-...|......++|...|.+... .+.-....+..++....- .+
T Consensus 130 ~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~--~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~e 207 (611)
T KOG1173|consen 130 SAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL--ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKE 207 (611)
T ss_pred cccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh--cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhh
Confidence 0 0111234444567888888877642 111222222222211111 01
Q ss_pred CHHHHHHHHHHhhhc---------------CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009977 181 QVDLAQNFLKYSNQH---------------LRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLI 245 (521)
Q Consensus 181 ~~~~a~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 245 (521)
+.+.-..+|+....+ .+...++.....-...+...+++.+..++++.+.+..+ +....+..-|
T Consensus 208 d~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~i 285 (611)
T KOG1173|consen 208 DVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHI 285 (611)
T ss_pred HHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHH
Confidence 111122222211000 02223455566667778889999999999999999887 5666666677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 009977 246 DGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKL 325 (521)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 325 (521)
.++...|+..+-..+=.++.+. .|..+.+|-++.-.|...|+..+|.+.|.+....+ +.-...|...+..|.-.|..
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchH
Confidence 7999999988888888888876 46678899999999999999999999999988654 33345888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 326 QEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKL 405 (521)
Q Consensus 326 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 405 (521)
++|+..+..+.+.-.. ....+--+..-|.+.++.+.|.++|.+.....+. |+...+-+.-.....+.+.+|..+|+..
T Consensus 363 dQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 9999999887653111 1111223444578899999999999998877544 7788888888888889999999999988
Q ss_pred HHC----CCc--cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 406 WYD----GIY--LNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 406 ~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
+.. +.+ .-..+++.|..+|.+.+.+++|+..+++.+.. .+-+..++.++.-.|...|+++.|...|.+.+..
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l- 518 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL- 518 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc-
Confidence 732 111 13456889999999999999999999999964 2348899999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHH
Q 009977 480 FKPESDSWALLVELIC 495 (521)
Q Consensus 480 ~~~~~~~~~~l~~~~~ 495 (521)
.|+..+...++..+.
T Consensus 519 -~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 519 -KPDNIFISELLKLAI 533 (611)
T ss_pred -CCccHHHHHHHHHHH
Confidence 688766665555433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-10 Score=98.91 Aligned_cols=272 Identities=11% Similarity=0.054 Sum_probs=171.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
.|+.....+...+...|+.++|+..|++....+ +-+...+....-.+.+.|+++....+...+.... ..+...|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 566777777777888888888888887775432 1122222222333456677777777776666542 2333344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKI 395 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (521)
+.......++..|+.+-++..+... .+...+-.-...+...+++++|.-.|+..+...+. +...|..|+..|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchH
Confidence 4555566777777777776665321 13444444455667777888887777777665322 567788888888888888
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHH-HHHH-cCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 009977 396 EEALGMLEKLWYDGIYLNKASYRIVL-NFSC-QKGELEKAIELLRLMLCRGFLPHY-ATSNELLVRLCKAGMAEDAAIAL 472 (521)
Q Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 472 (521)
.+|...-+...+. ...+..+...+. ..|. ...--++|.+++++.+ .+.|+. ...+.+...|...|..++++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L--~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL--KINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh--ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7777666655543 222445555442 2222 2334567777777776 345632 34455666777788888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 473 FGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
++.+.. .||....+.|.+.+...+.+.+|++.|..++..+|.+
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 777654 5777777788888888888888888888777777665
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.7e-13 Score=112.61 Aligned_cols=237 Identities=14% Similarity=0.052 Sum_probs=189.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009977 278 NVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRA 357 (521)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (521)
+-+..+|.+.|.+.+|.+.++..++. .|-+.||..|.++|.+..+...|+.++.+-.+. .+-|+.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 66788888999999999988888776 577778888899999999999999998887763 222444445667778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHH
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
++.++|.++++...+.... +......+...|.-.++.+.|+.++++++..|+. ++..|+.+.-+|...++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8999999999988877543 6667777777888888999999999999998877 8888888888888889999999999
Q ss_pred HHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 438 RLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 438 ~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
++++..--.| -..+|..+.......|++..|.+.|+-.+..+ ....+.++.|.-.-.+.|+.++|..+++.+....|
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 8888654444 45567778777888899999999998877654 33457888888888889999999999999888887
Q ss_pred cCccC
Q 009977 516 GTIQV 520 (521)
Q Consensus 516 ~~~~v 520 (521)
.-.++
T Consensus 461 ~m~E~ 465 (478)
T KOG1129|consen 461 DMAEV 465 (478)
T ss_pred ccccc
Confidence 76554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-11 Score=106.72 Aligned_cols=397 Identities=15% Similarity=0.083 Sum_probs=265.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhccCCcC-HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHH
Q 009977 97 TYATILDKLARYKKFEAVDAVLRQMTYETCKFH-EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNL 175 (521)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 175 (521)
.+-....-|.+.|++++|++.|.+.++. .|+ +..|.+...+|...|+|+++++--....+. .+.-..++..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 3555666788899999999999999876 455 566677888899999999999877766531 22234456666677
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHhc--
Q 009977 176 LIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKK--SQMSYPNLITYSTLIDGLCKN-- 251 (521)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-- 251 (521)
+-..|++++|+.=+.-..-..++. +..+--.+=+.+- ..|....++-.+ ..+..|+.....+....+...
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 778888888764332211111111 1111111111111 122222222222 223335555555555554321
Q ss_pred ------CC-----hHHHHHHHHHHHhcC-------------C--CCC-----C------HHHHHHHHHHHHhCCCHHHHH
Q 009977 252 ------GR-----FREAIELFEEMVSKD-------------Q--ILP-----D------ALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 252 ------g~-----~~~A~~~~~~~~~~~-------------~--~~~-----~------~~~~~~l~~~~~~~~~~~~a~ 294 (521)
++ ..++.+.+..-...+ + ..+ | ..+.......+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 11 233344433332110 0 000 1 111122222234468888999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009977 295 KIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERG 374 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 374 (521)
.-|+..++.. +-+...|-.+..+|...++.++....|......+.. ++.+|..-..++.-.+++++|..=|++.+...
T Consensus 347 ~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999875 333344888888999999999999999999875433 57788888888888899999999999999886
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC------
Q 009977 375 CKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH------ 448 (521)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~------ 448 (521)
+. +...|-.+..+..+.+++++++..|++..+. ++-.+..|+.....+...+++++|.+.|+..++. .|.
T Consensus 425 pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v 500 (606)
T KOG0547|consen 425 PE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIV 500 (606)
T ss_pred hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccc
Confidence 54 6778888888888999999999999999887 3336789999999999999999999999999854 332
Q ss_pred -HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 449 -YA--TSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 449 -~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
.. +.-+++..-. .+++..|..+++++.+.+ |.. ..|..|.....+.|+.++|+++|++...
T Consensus 501 ~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQW-KEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22 2222332223 388999999999998874 544 6788999999999999999999998764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-11 Score=122.28 Aligned_cols=250 Identities=14% Similarity=0.070 Sum_probs=151.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 217 TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK---------NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
++++|.+.|++..+..| .+...|..+..++.. .+++++|...++++.+.+ +.+...+..+...+...
T Consensus 276 ~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 45677777777777665 345556555554432 234677777887777653 45666677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELL 367 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 367 (521)
|++++|...|+++++.+ +.+...+..+...+...|++++|...++++.+.... +...+..++..+...|++++|+..+
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 78888888888777765 445666777777777788888888888777764322 1222233344455577778888877
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCC
Q 009977 368 KEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR-GFL 446 (521)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~ 446 (521)
+++.+...+-+...+..+..++...|+.++|...+.++...... +....+.+...|...| ++|...++.+.+. .-.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 77765532223445666677777788888888877776554221 3334445555556666 3666666665532 222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 447 PHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 447 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
|....+ +...+.-.|+.+.+... +++.+.
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 222222 33334445665555544 665543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.3e-10 Score=102.40 Aligned_cols=426 Identities=15% Similarity=0.103 Sum_probs=262.6
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHH
Q 009977 70 KCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERV 149 (521)
Q Consensus 70 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 149 (521)
...+++...+++.+.+++ +++....+.....-.+...|+-++|....+.....+ .-+...|..+.-.+....++++|
T Consensus 18 yE~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHH
Confidence 345778888888888765 345555666566666677889999999888877655 34556777777778888999999
Q ss_pred HHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 150 LEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMK 229 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 229 (521)
++.|.... ...+.|...+.-+.-.-++.|+++-....-..+.+. .+.....|..++.++.-.|++..|..++++..
T Consensus 95 iKcy~nAl--~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 95 IKCYRNAL--KIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHH--hcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999886 334566667777766677788887777666665541 22344578888888888999999999999887
Q ss_pred hCCCCCCCHHHHHHH------HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 230 KSQMSYPNLITYSTL------IDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 230 ~~~~~~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
+.....++...+... .....+.|..++|.+.+..-... +......-..-...+.+.+++++|..++..++..
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 765322555554332 23456678888888887765432 2222333345566778889999999999999887
Q ss_pred CCCCCcchHH-HHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcHh
Q 009977 304 GCNPNVFNYT-TLMNGFCKEGKLQEAK-EVFDEMKNFLLKPDTIGYTTL-INCFCRAGRVDEALELLKEMKERGCKADIV 380 (521)
Q Consensus 304 ~~~~~~~~~~-~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 380 (521)
. ||...|. .+..++.+..+.-++. .+|....+.- |....-..+ +.......-.+..-.++..+.+.|+++
T Consensus 249 n--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~--- 321 (700)
T KOG1156|consen 249 N--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS--- 321 (700)
T ss_pred C--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---
Confidence 4 5544444 4444554344444444 5566554421 111111111 111111112223334555666666543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CccCHHHH--HHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLW----YDG----------IYLNKASY--RIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
++..+...|-.-...+-..++.-.+. ..| -.|....| ..++..+-..|+++.|..+++.++.
T Consensus 322 vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId-- 399 (700)
T KOG1156|consen 322 VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID-- 399 (700)
T ss_pred hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--
Confidence 33333333322221111111111111 111 03343333 3556677788888888888888883
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 009977 445 FLPH-YATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 445 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 514 (521)
..|+ ++.|..-.+.+...|++++|...+++..+.+ .+|...-...+.-..++++.++|.+++......+
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 4553 3444455577888888888888888887765 4555554466777778888888888877776655
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-11 Score=120.32 Aligned_cols=270 Identities=13% Similarity=0.037 Sum_probs=188.3
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---------CCCHHHHHHHHHHHH
Q 009977 236 PNLITYSTLIDGLCK-----NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR---------GGKVDRAKKIMEFMK 301 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 301 (521)
.+...|...+.+... .+++++|+.+|++..+.+ +.+...|..+..++.. .+++++|...+++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 444555444444221 234679999999998764 4455666666655442 245789999999999
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhH
Q 009977 302 NNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVT 381 (521)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 381 (521)
+.. +.+..++..+...+...|++++|...|+++.+... .+...+..+...+...|++++|+..++++.+..+. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 876 66777888888899999999999999999988532 24677888888999999999999999999987654 3333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009977 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH-YATSNELLVRLC 460 (521)
Q Consensus 382 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 460 (521)
+..++..+...|++++|...++++......-++..+..+..++...|++++|...++++... .|+ ....+.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 34445556778999999999999876532224556777888888999999999999887643 443 344455555666
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 461 KAGMAEDAAIALFGLVEM-GFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
..| +.|...++.+.+. .-.+....+ +...+.-.|+-+.+..+ +++.+.++..
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~~~ 539 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDNIW 539 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccchHh
Confidence 666 4777777776642 112222222 44455567777666666 8888776543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-11 Score=108.50 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=35.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK 394 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (521)
+..++...|++++|...+.+...... .+...+..+...+...|++++|...+++..+.. ..+...+..++..+...|+
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh
Confidence 33444444444444444444433211 123333344444444444444444444443331 1123333333444444444
Q ss_pred HHHHHHHHHHH
Q 009977 395 IEEALGMLEKL 405 (521)
Q Consensus 395 ~~~a~~~~~~~ 405 (521)
.++|..+.+.+
T Consensus 219 ~~~a~~~~~~~ 229 (234)
T TIGR02521 219 VAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.9e-10 Score=104.50 Aligned_cols=428 Identities=14% Similarity=0.118 Sum_probs=258.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc-
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC- 143 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 143 (521)
...++...|++++|++.++.... .+.............+.+.|+.++|..++..+++++ |.+..-|..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 34567889999999999987532 234345567788899999999999999999999997 34444444455554222
Q ss_pred ----CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHH-HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 144 ----SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVD-LAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 144 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
.+.+...++|+++.. ..|...+...+.-.+.....+. .+..++...+.+ |+| .+++.|-..|......
T Consensus 87 ~~~~~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvP---slF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAE---KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVP---SLFSNLKPLYKDPEKA 159 (517)
T ss_pred ccccccHHHHHHHHHHHHH---hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCc---hHHHHHHHHHcChhHH
Confidence 356777888888753 2344444433322222222332 344555555543 443 3666676777655555
Q ss_pred HHHHHHHHHHHhCC-------------CCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 219 ESAFEVLKEMKKSQ-------------MSYPNLITY--STLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 219 ~~A~~~~~~~~~~~-------------~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
+-..+++....... ...|....| ..+...|-..|++++|++++++.++.. |..+..|..-...
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Confidence 55556665544321 112444334 556777888999999999999998863 3446788888999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI------GY--TTLINCFC 355 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~ 355 (521)
+-+.|++.+|.+.++...... .-|...-+-.+..+.+.|+.++|.+++....+.+..|... .| .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 4567777778888999999999999999887755433221 22 44566888
Q ss_pred hcCCHHHHHHHHHHHHHc-----CCCCcH----------hHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCc--
Q 009977 356 RAGRVDEALELLKEMKER-----GCKADI----------VTFNIILGGLCREGK-------IEEALGMLEKLWYDGIY-- 411 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~-----~~~~~~----------~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~-- 411 (521)
+.|++..|++.|..+.+. .-+.|- .+|..++...-+... ...|.+++-.+......
T Consensus 317 r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~ 396 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQ 396 (517)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccc
Confidence 999999999877766543 011122 233333332211111 12344444444332100
Q ss_pred -c---------CHHHHHHHHHHH---HcCCCHHHHHHHHHH-H----------HH-CCCCCCHHHHHHHHHHHHhcCC-H
Q 009977 412 -L---------NKASYRIVLNFS---CQKGELEKAIELLRL-M----------LC-RGFLPHYATSNELLVRLCKAGM-A 465 (521)
Q Consensus 412 -~---------~~~~~~~l~~~~---~~~g~~~~a~~~~~~-~----------~~-~~~~p~~~~~~~l~~~~~~~g~-~ 465 (521)
. +..--..+..-. .+...-+++...-.+ - .. .....|... +..-+.+..+ .
T Consensus 397 ~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPL 473 (517)
T PF12569_consen 397 GEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPL 473 (517)
T ss_pred ccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHH
Confidence 0 000000111000 000111111111000 0 00 001112222 2333444444 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 009977 466 EDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (521)
++|.++++-+.+.+ +.+..+|..-.++|.+.|++--|++.+.+
T Consensus 474 e~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 474 EEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 88999999888775 45668999999999999999999988765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-11 Score=107.68 Aligned_cols=196 Identities=11% Similarity=0.028 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHH
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLI 177 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (521)
+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++.... .+.+...+..+...+.
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Confidence 3334444444444444444444443332 222333333444444444444444444433311 1112222333333333
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
..|++++|...++.+......+.....+..+...+...|++++|...+++.....+ .+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHHHH
Confidence 33333333333333332111111222333344444444444444444444444332 2333344444444444444444
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
...+++.... .+.+...+..++..+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444332 1223333333344444444444444444333
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-10 Score=109.88 Aligned_cols=293 Identities=16% Similarity=0.150 Sum_probs=187.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN 251 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (521)
...++...|++++|++.++.... .+..........+..+.+.|+.++|..++..+.+.+| .|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP--dn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP--DNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHhhh
Confidence 34456667777777777766432 3444455667777888888888888888888888776 4666666666655222
Q ss_pred -----CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 009977 252 -----GRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV-DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKL 325 (521)
Q Consensus 252 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 325 (521)
.+.+....+|+++.... |.......+.-.+.....+ ..+..++..+...|+|+ +|..+-..|......
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 24566777777776542 3322222222222221222 24455666677777543 566666666655555
Q ss_pred HHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 009977 326 QEAKEVFDEMKNF----L----------LKPDT--IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGL 389 (521)
Q Consensus 326 ~~A~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (521)
+-..+++...... + -.|.. .++..+...|-..|++++|++++++.+++.+. .+..|..-...+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Karil 238 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Confidence 5555555544321 0 12333 34455666777888888888888888887433 356777778888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHh
Q 009977 390 CREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYAT--------SNELLVRLCK 461 (521)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--------~~~l~~~~~~ 461 (521)
-+.|++.+|.+.++..+..+.. |...-+-.+..+.+.|++++|.+++....+.+..|.... ......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887655 666667777788888888888888888876655442211 1334567788
Q ss_pred cCCHHHHHHHHHHHH
Q 009977 462 AGMAEDAAIALFGLV 476 (521)
Q Consensus 462 ~g~~~~a~~~~~~~~ 476 (521)
.|++..|++.|....
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 888888877665544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-09 Score=93.55 Aligned_cols=395 Identities=14% Similarity=0.056 Sum_probs=261.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCch-HHHHHHHHhhhccCCcCHHHHHHHHHHHHc
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFE-AVDAVLRQMTYETCKFHEGIFLNLMKHFSN 142 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (521)
..+..|...++-+.|.......+... ...-.+.|+..+.+.|--+ ++.--+.+.+..- +..- ..|.+..+
T Consensus 102 ~~aecy~~~~n~~~Ai~~l~~~p~t~----r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~aL----~~i~~ll~ 172 (564)
T KOG1174|consen 102 RAAECYRQIGNTDMAIETLLQVPPTL----RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PMAL----QVIEALLE 172 (564)
T ss_pred HHHHHHHHHccchHHHHHHhcCCccc----cchhHHHHHHHHHhccccccHHHHhhhHHHHhc-chHH----HHHHHHHH
Confidence 46777888888888888876653221 2233455555555544222 2222222222211 1111 11111111
Q ss_pred c--CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 143 C--SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE--SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 143 ~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
. .-.+.+.-....+ ...|........+.++++ .++...|...+-.+.....++-|+.....+...+...|+.
T Consensus 173 l~v~g~e~~S~~m~~~----~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 173 LGVNGNEINSLVMHAA----TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred Hhhcchhhhhhhhhhe----ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 1 1111111111111 123333333444444433 4555555554444444446777899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIME 298 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (521)
++|...|++....++ -+....-...-.+...|+++....+...+.... ..+...|-.-+......+++..|+.+-+
T Consensus 249 ~~a~~~Fe~~~~~dp--y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 249 FQAEDIFSSTLCANP--DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred hHHHHHHHHHhhCCh--hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 999999999887654 344444444556678999999999888887653 3344555555566667889999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 009977 299 FMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKAD 378 (521)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 378 (521)
+.++.. +.+...+..-...+...++.++|.-.|+...... +-+..+|..|+..|...|++.+|.-+-+...+.- ..+
T Consensus 325 K~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~s 401 (564)
T KOG1174|consen 325 KCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNS 401 (564)
T ss_pred HHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcc
Confidence 988765 4566677667788899999999999999988642 2358899999999999999999988777665542 225
Q ss_pred HhHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009977 379 IVTFNIIL-GGLCR-EGKIEEALGMLEKLWYDGIYLN-KASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNEL 455 (521)
Q Consensus 379 ~~~~~~l~-~~~~~-~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 455 (521)
..+...+. ..|.- ...-++|.+++++.+.. .|+ ....+.+...|...|..+.++.++++.+. ..||....+.|
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~L 477 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHL 477 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHH
Confidence 55665553 33332 23457888888888765 444 34566777888899999999999999884 57899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 456 LVRLCKAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 456 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
.+.+.....+++|...|..++..+ |..
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr~d--P~~ 504 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALRQD--PKS 504 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC--ccc
Confidence 999999999999999999888763 544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-09 Score=97.95 Aligned_cols=421 Identities=16% Similarity=0.117 Sum_probs=248.9
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHH
Q 009977 69 IKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHER 148 (521)
Q Consensus 69 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (521)
+...|+-++|.......++.+ ..+.+.|..+.-.+....++++|++.|......+ +.+...+..+.-.-++.|+++-
T Consensus 51 L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhh
Confidence 556678888888877764322 4466778877777777788888888888888765 5566777777777777788887
Q ss_pred HHHHHHhhccccCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHH------HHHHHhcCChHHH
Q 009977 149 VLEMFHKIHPITREKPS-LKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNIL------IKHHCKRGTLESA 221 (521)
Q Consensus 149 a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~g~~~~A 221 (521)
....-.++.+ ..|+ ...|.....++.-.|++..|..+++...+...-.|+...+... .....+.|.+++|
T Consensus 128 ~~~tr~~LLq---l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 128 YLETRNQLLQ---LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred HHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 7777666642 2333 3346667777777888888888888876654334554443322 3345567777888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hCCCHHHHH-HHHHH
Q 009977 222 FEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFC-RGGKVDRAK-KIMEF 299 (521)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~ 299 (521)
++.+......-. .....-..-...+.+.++.++|..+|..++.+ .||...|......+. +..+.-++. .+|..
T Consensus 205 le~L~~~e~~i~--Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 205 LEHLLDNEKQIV--DKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHhhhhHHH--HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777765543321 22233345566778888888888888888876 355555544444333 333333333 55555
Q ss_pred HHHcCCCCCcchHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------
Q 009977 300 MKNNGCNPNVFNYTTL-MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMK------- 371 (521)
Q Consensus 300 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------- 371 (521)
..+. .|....-..+ +.......-.+..-.++....+.|+.+- +..+...|-.-...+ +++++.
T Consensus 280 ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~----~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 280 LSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVA----FLEKLVTSYQHSL 350 (700)
T ss_pred Hhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhH----HHHHHHHHHHhhc
Confidence 5443 2221111111 1111112223333445555566555432 222222222111111 222211
Q ss_pred -HcC----------CCCcHhH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHcCCCHHHHHHHH
Q 009977 372 -ERG----------CKADIVT--FNIILGGLCREGKIEEALGMLEKLWYDGIYLN-KASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 372 -~~~----------~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
..| -+|.... +..++..+-+.|+++.|..+++....+ .|+ +..|..=.+.+...|++++|..++
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 000 1334433 345677778888999999888888776 333 344555567778888999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCH----HHHHH--HHHHHHccCcHHHHHHHHHH
Q 009977 438 RLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFK--PES----DSWAL--LVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 438 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~----~~~~~--l~~~~~~~g~~~~A~~~~~~ 509 (521)
++..+.. .||..+-..-+.-..++.+.++|.++.....+.|.. .+. -.|.. -+++|.++|++.+|++-|..
T Consensus 429 ~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 429 DEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 8888543 334444334555556788888888888877766531 111 12222 23677788888888877776
Q ss_pred HHH
Q 009977 510 LVI 512 (521)
Q Consensus 510 m~~ 512 (521)
+..
T Consensus 508 i~k 510 (700)
T KOG1156|consen 508 IEK 510 (700)
T ss_pred HHH
Confidence 543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.5e-12 Score=107.29 Aligned_cols=227 Identities=12% Similarity=0.010 Sum_probs=122.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN 251 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (521)
+.++|.+.|.+.+|...++..++ ..|.+.+|..|.+.|.+..+...|+.+|.+-.+.-| .|+.....+.+.+-..
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP--~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP--FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--chhhhhhhhHHHHHHH
Confidence 45555566666666655555443 234455566666666666666666666666555443 3444444455555556
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 009977 252 GRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEV 331 (521)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 331 (521)
++.++|.++|+...+.. +.+......+...|.-.++++.|+.+|+++++.| ..++..|..+.-+|.-.+++|-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 66666666666665542 3344444444455555556666666666666665 23555555565555556666666555
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 332 FDEMKNFLLKPD--TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWY 407 (521)
Q Consensus 332 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 407 (521)
|.+....--.|+ ...|-.+....+..||+..|.+.|+-.+..+.. +...++.|.-.-.+.|++++|..++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 555544222222 334444444455555555555555555544332 444555555555555555555555555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-09 Score=94.35 Aligned_cols=390 Identities=15% Similarity=0.098 Sum_probs=231.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC 143 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (521)
.+...+...|++++|+..+..+.+.. .++...+..|.-+..-.|.+.+|.++-+...+. +-....++....+.
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-----pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-----PLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHh
Confidence 35556778899999999999986543 567777878888888889999999887775432 22233344455555
Q ss_pred CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHH-HHHHHhcCChHHHH
Q 009977 144 SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNIL-IKHHCKRGTLESAF 222 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~ 222 (521)
++-++-...-+.+.. +.+.-..+.......-.+++|.+++..++.. .|+....|.. .-+|.+..-++-+.
T Consensus 135 ndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred CcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHH
Confidence 665555444444321 1122333344444445667777777766542 2443333332 33455566666666
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHh--cCC---------------------------------hHHHHHHHHHHHhc
Q 009977 223 EVLKEMKKSQMSYPNLITYSTLIDGLCK--NGR---------------------------------FREAIELFEEMVSK 267 (521)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~---------------------------------~~~A~~~~~~~~~~ 267 (521)
++++--.+.-+ .+....|..+....+ .|+ -+.|++++-.+.+
T Consensus 206 evl~vYL~q~p--dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~- 282 (557)
T KOG3785|consen 206 EVLKVYLRQFP--DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK- 282 (557)
T ss_pred HHHHHHHHhCC--CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh-
Confidence 66666555443 233333333222222 121 1233333333322
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCC
Q 009977 268 DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEG-------KLQEAKEVFDEMKNFLL 340 (521)
Q Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~ 340 (521)
+-| ..-..++-.|.+.++..+|..+.+.+. +.++.-|..-.-.+...| ...-|.+.|.-.-+.+.
T Consensus 283 --~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 283 --HIP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred --hCh--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 122 233556667889999999998877653 223333322222233333 35567777776655544
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHH-
Q 009977 341 KPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYR- 418 (521)
Q Consensus 341 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~- 418 (521)
.-| ...-..+...+.-..++++.+.++..+..--.. |...-..+.++++..|.+.+|.++|-.+....++ |..+|.
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s 432 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKS 432 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHH
Confidence 433 222345556666667889999888887765443 3333345788999999999999999887665555 555665
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009977 419 IVLNFSCQKGELEKAIELLRLMLCRGFLPHYAT-SNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSW 487 (521)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 487 (521)
.|.++|.+++.++-|+.++-++- -..+..+ +..+...|.+++.+--|.+.|+.+... +|+++-|
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 55678889999999888765553 2223333 344456788888888888888877665 4555544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.8e-09 Score=95.29 Aligned_cols=408 Identities=14% Similarity=0.135 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhc-cCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHH
Q 009977 95 NATYATILDKLARYKKFEAVDAVLRQMTYE-TCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCL 173 (521)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 173 (521)
+..|...++.+.++|+.-.....|+..+.. .+.....+|.-.+......|-++.++.+|++.. +.++......+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL-----k~~P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL-----KVAPEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-----hcCHHHHHHHH
Confidence 346778888889999999999999988754 233345577788888888999999999999986 44556688889
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcC-----CCCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHL-----RLKPNTCIFNILIKHHCKRGTLE---SAFEVLKEMKKSQMSYPNLITYSTLI 245 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~l~ 245 (521)
..++..+++++|.+.+..++... ..+.+...|..+-....+.-+.- ....+++.+...-.. .-...|+.|.
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftD-q~g~Lw~SLA 255 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTD-QLGFLWCSLA 255 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcH-HHHHHHHHHH
Confidence 99999999999999998876421 12334556776666666544432 334455554443221 2246799999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC----------------C------CHHHHHHHHHHHHHc
Q 009977 246 DGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG----------------G------KVDRAKKIMEFMKNN 303 (521)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~ 303 (521)
.-|.+.|.+++|.++|++.+.. ..+..-+..+.++|..- + +++-...-|+.+.+.
T Consensus 256 dYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 9999999999999999998865 22233333333333321 1 122333344444432
Q ss_pred C-----------CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 009977 304 G-----------CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD------TIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 304 ~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
+ -+.++..|..-+ -+..|+..+-...+.++.+. +.|. ...|..+...|-..|+++.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 2 012223332222 23356777777888777652 3332 45688899999999999999999
Q ss_pred HHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------CCcc-------CHHHHHHHHHHHHc
Q 009977 367 LKEMKERGCKAD---IVTFNIILGGLCREGKIEEALGMLEKLWYD----------GIYL-------NKASYRIVLNFSCQ 426 (521)
Q Consensus 367 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~-------~~~~~~~l~~~~~~ 426 (521)
|++..+...+-- ..+|..-...-.++.+++.|+++++.+... |..| +...|..+++.--.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 999887644311 234555556666788999999998877542 1111 23456666776677
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc---cCcHHH
Q 009977 427 KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICR---GRKLLF 502 (521)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~ 502 (521)
.|-++....+|+++++..+. ++.+.......+....-++++.++|++-...=-.|+. +.|+..+..+.+ .-+.+.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 89999999999999976543 4444444555566677789999999876654334554 778877766654 467889
Q ss_pred HHHHHHHHHHcCc
Q 009977 503 AFELLDELVIKES 515 (521)
Q Consensus 503 A~~~~~~m~~~~~ 515 (521)
|..+|+++++.-|
T Consensus 569 aRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 569 ARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-10 Score=109.55 Aligned_cols=245 Identities=13% Similarity=0.073 Sum_probs=154.9
Q ss_pred cccCCCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHH
Q 009977 53 ARKRSRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGI 132 (521)
Q Consensus 53 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (521)
.+..|+-+||..+|.-|+..|+.+.|- +|.-| +-...+-+...++.++......++.+.+. .|...+
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 445677788888888888888888887 77777 44455667777888888777777777655 466778
Q ss_pred HHHHHHHHHccCcHHH---HHHHHHhhcc----ccCCCCCHhH-------------HHHHHHHHHhcCCHHHHHHHHHHh
Q 009977 133 FLNLMKHFSNCSLHER---VLEMFHKIHP----ITREKPSLKA-------------ISTCLNLLIESNQVDLAQNFLKYS 192 (521)
Q Consensus 133 ~~~l~~~~~~~g~~~~---a~~~~~~~~~----~~~~~~~~~~-------------~~~ll~~~~~~~~~~~a~~~~~~~ 192 (521)
|..+..+|...||... +.+.++.+.. .+...+.... ...++....-.|-++.+++++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999888654 3332222211 0101111111 112233333444455555555433
Q ss_pred hhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 009977 193 NQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP 272 (521)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 272 (521)
.......|... .++-+... .....++.+....... .++..++..++.+-..+|+.+.|..++.+|.++ |.+.
T Consensus 166 Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-gfpi 237 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-GFPI 237 (1088)
T ss_pred CcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-CCCc
Confidence 21111111111 13322222 2223333333222211 389999999999999999999999999999877 6887
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 009977 273 DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321 (521)
Q Consensus 273 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (521)
+..-|-.++-+ .++...++.++..|.+.|+.|+..|+...+..+.+
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 77766666544 78888999999999999999999988766555554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-10 Score=91.18 Aligned_cols=199 Identities=15% Similarity=0.014 Sum_probs=152.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009977 169 ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL 248 (521)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (521)
...+.-.|.+.|+...|..-++++++. .+.+..+|..+...|.+.|+.+.|.+.|++..+..+ .+..+.|..+..+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHHH
Confidence 344556677778888888888877652 233456888888888888888888888888888776 5777788888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 009977 249 CKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEA 328 (521)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 328 (521)
|..|++++|...|++.........-..+|..+.-+..+.|+++.|...|++.++.. +..+.+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88888888888888887764444445678888888888888888888888888875 45566777888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009977 329 KEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKER 373 (521)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 373 (521)
...++.....+. ++..+.-..|..-...|+.+.+-+.=.++...
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888777554 67777666677777788888877766666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-08 Score=93.34 Aligned_cols=227 Identities=11% Similarity=0.045 Sum_probs=136.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL 145 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (521)
++.+..++++++|++...+++.. .+.|...+..=+-++...++|++|..+.+.-... ......+..-..+..+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 44566789999999999998633 3556667778888899999999999776654321 1111111233344557899
Q ss_pred HHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 146 HERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
.++|+..++-.. ..+..+...-...+.+.|++++|..+|+.+.++..-.-+...-..++..-.. -.+. +.
T Consensus 95 ~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LL 164 (652)
T ss_pred HHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HH
Confidence 999999998442 3445566777888999999999999999997642222222222222221110 1111 12
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCC--CCHH-----HHHHHHHHHHhCCCHHH
Q 009977 226 KEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD------QIL--PDAL-----TYNVLIDGFCRGGKVDR 292 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~--~~~~-----~~~~l~~~~~~~~~~~~ 292 (521)
+.... .+. .+-..+-.....+...|++.+|+++++...... +-. -+.. .-.-+.-++...|+-.+
T Consensus 165 q~v~~-v~e-~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 165 QSVPE-VPE-DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HhccC-CCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 22111 110 122223334456777899999999998882210 000 1111 12234445667899999
Q ss_pred HHHHHHHHHHcCCCCCc
Q 009977 293 AKKIMEFMKNNGCNPNV 309 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~ 309 (521)
|..++...++.. ++|.
T Consensus 243 a~~iy~~~i~~~-~~D~ 258 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADE 258 (652)
T ss_pred HHHHHHHHHHhc-CCCc
Confidence 999998888876 4443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.4e-09 Score=96.43 Aligned_cols=416 Identities=11% Similarity=0.036 Sum_probs=223.8
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH
Q 009977 67 SLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH 146 (521)
Q Consensus 67 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (521)
.+....|+++.|+..|..++... ++|.+.|+.-..+|+..|++++|.+=-.+-.+.+ |.-...|.....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 45567899999999999987665 6688899999999999999999988877777665 44466888999999999999
Q ss_pred HHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC-hHHHHHHH
Q 009977 147 ERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT-LESAFEVL 225 (521)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~ 225 (521)
++|+..|.+-.+ ..+.+...+..+..++...... .+.| -++..|..+..--...+- .+.+....
T Consensus 87 ~eA~~ay~~GL~--~d~~n~~L~~gl~~a~~~~~~~---~~~~----------~~p~~~~~l~~~p~t~~~~~~~~~~~~ 151 (539)
T KOG0548|consen 87 EEAILAYSEGLE--KDPSNKQLKTGLAQAYLEDYAA---DQLF----------TKPYFHEKLANLPLTNYSLSDPAYVKI 151 (539)
T ss_pred HHHHHHHHHHhh--cCCchHHHHHhHHHhhhHHHHh---hhhc----------cCcHHHHHhhcChhhhhhhccHHHHHH
Confidence 999999998753 2344445566666665111100 1111 011111111110000000 01111111
Q ss_pred HHHHhCCCCCCCHHHHH---HHHHHHHhcCChH-HHHHHHHHHHhcCCCCC----------------------CHHHHHH
Q 009977 226 KEMKKSQMSYPNLITYS---TLIDGLCKNGRFR-EAIELFEEMVSKDQILP----------------------DALTYNV 279 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~----------------------~~~~~~~ 279 (521)
-+....++ .+...|. .++.+.......+ .....-..+....+..| -..-...
T Consensus 152 l~~~~~~p--~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 152 LEIIQKNP--TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHhhcCc--HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 11111111 0111110 0111110000000 00000000000000000 0122455
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHH
Q 009977 280 LIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT-------LIN 352 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~ 352 (521)
+.++..+..++..|++.+....+.. .+..-++....+|...|.+...........+.|.. ....|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 6677777778888888888777764 45555666777788888777777766665554422 1122222 333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHH
Q 009977 353 CFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEK 432 (521)
Q Consensus 353 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (521)
+|.+.++++.|+..|.+.......|+.. .+....+++....+.....++.. ..-...-...+.+.|++..
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHH
Confidence 5556677888888887766554333221 12223344444333333322221 1111122445556677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 433 AIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 433 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
|+..|.++++.. +-|...|..-.-+|.+.|.+..|+.-.+...+.. ++....|..=+.++....+|++|.+.|++.++
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777776542 2266666666667777777777766666666552 22234454445555566677777777777777
Q ss_pred cCccC
Q 009977 513 KESGT 517 (521)
Q Consensus 513 ~~~~~ 517 (521)
.+|.+
T Consensus 455 ~dp~~ 459 (539)
T KOG0548|consen 455 LDPSN 459 (539)
T ss_pred cCchh
Confidence 66654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-09 Score=88.26 Aligned_cols=287 Identities=13% Similarity=0.071 Sum_probs=140.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 293 (521)
..+++..+..+.++.... .+..+.+...-...+.|++++|.+-|+...+-+|..| ...|+..+ +..+.|+++.|
T Consensus 124 se~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasA 197 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASA 197 (459)
T ss_pred ccccCcchHHHHHhccCC----CccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHH
Confidence 344444444444443321 2223333333344455555555555555555444443 22333332 22344455555
Q ss_pred HHHHHHHHHcCCCCC----------------------------cchHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH
Q 009977 294 KKIMEFMKNNGCNPN----------------------------VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL-LKPDT 344 (521)
Q Consensus 294 ~~~~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 344 (521)
++...+++++|++.. +..++.-...+.+.++++.|.+.+-.|..+. ...|+
T Consensus 198 Lk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 198 LKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred HHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 555555554443211 1233444455678899999998888775322 23456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-ccCHHHHHHHHHH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI-YLNKASYRIVLNF 423 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~ 423 (521)
++...+.-.= ..+++.+..+-+.-+.+..+. ...||..++-.||+..-++.|-+++.+-..... -.+...|+.+=..
T Consensus 278 vTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaL 355 (459)
T KOG4340|consen 278 VTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDAL 355 (459)
T ss_pred hhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHH
Confidence 6665543322 234455555555556665554 457888888899999888888887755322211 1233344433332
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGM---AEDAAIALFGLVEMGFKPESDSWALLVELICRGRKL 500 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (521)
..-.-..++|.+-+..+... +.........-+..-....+ ...+.+-+++.++. -..+.....+.|.+..++
T Consensus 356 It~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy 430 (459)
T KOG4340|consen 356 ITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDY 430 (459)
T ss_pred HhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhcccccc
Confidence 23345667776665554421 00000000000111111111 11222223332221 112233344566778999
Q ss_pred HHHHHHHHHHHHc
Q 009977 501 LFAFELLDELVIK 513 (521)
Q Consensus 501 ~~A~~~~~~m~~~ 513 (521)
..+.+.|+.-.+-
T Consensus 431 ~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 431 PMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.5e-10 Score=90.45 Aligned_cols=195 Identities=14% Similarity=0.058 Sum_probs=95.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (521)
..-|.-.|...|+...|.+-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3444445555555555555555555543 334445555555555555555555555555543211 24444555555555
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHH
Q 009977 357 AGRVDEALELLKEMKERGC-KADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (521)
.|++++|...|++...... .-...+|..+.-+..+.|+.+.|.+.|++.++.... .+.+...+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 5555555555555554311 112334555555555555555555555555554322 23344444444555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 436 LLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGL 475 (521)
Q Consensus 436 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 475 (521)
+++.....+ .++..++.-.|+.-.+.|+.+.+-++=.++
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 555554432 244554444444445555554444443333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-08 Score=96.81 Aligned_cols=406 Identities=13% Similarity=-0.005 Sum_probs=267.6
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccC-CcCHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETC-KFHEGIFLNLM 137 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 137 (521)
...|..+.-++...|+++.+-+.|++... +.-.....|+.+...+...|.-..|..+++.-..... +++...+....
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 34456666677888999999999998752 2234567799999999999999999999988765432 23344444455
Q ss_pred HHHHc-cCcHHHHHHHHHhhccccCC---CCCHhHHHHHHHHHHhc-----------CCHHHHHHHHHHhhhcCCCCCcH
Q 009977 138 KHFSN-CSLHERVLEMFHKIHPITRE---KPSLKAISTCLNLLIES-----------NQVDLAQNFLKYSNQHLRLKPNT 202 (521)
Q Consensus 138 ~~~~~-~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~ 202 (521)
+.|.+ .+..+++++.-.++....+. .-.+..+..+.-+|... ....++++.++.+.+...-.|
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp-- 478 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP-- 478 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc--
Confidence 55554 47778887776665432111 22233444444444321 123567788888876433334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
.+...+.--|...++++.|.+..++..+.+.. .+...|..+...+...+++.+|+.+.+......+ .|......-+.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~-~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~--~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRG-DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG--DNHVLMDGKIH 555 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh--hhhhhchhhhh
Confidence 44444555677889999999999999998664 7899999999999999999999999998887532 22222222222
Q ss_pred HHHhCCCHHHHHHHHHHHHHc---------------------C-------CCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKNN---------------------G-------CNPNVFNYTTLMNGFCKEGKLQEAKEVFDE 334 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 334 (521)
.-...++.+++......++.. | ......++..+.......+....-...
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence 223345555555444333221 0 000111222221111100000000000
Q ss_pred HHhCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 335 MKNFLLK--PD------TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 335 ~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 406 (521)
+...... |+ ...|......+...+..++|...+.+.....+. ....|......+...|..++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 1111111 22 234556666788889999999888887766432 56677777788888999999999999988
Q ss_pred HCCCccCHHHHHHHHHHHHcCCCHHHHHH--HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 407 YDGIYLNKASYRIVLNFSCQKGELEKAIE--LLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..++. ++.+..++...+.+.|+..-|.. ++..+++ ++| +...|..+...+.+.|+.++|...|....+.
T Consensus 712 ~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 87544 56788899999999998888877 9999985 566 8999999999999999999999999988764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-09 Score=95.95 Aligned_cols=218 Identities=15% Similarity=0.084 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHhhhcCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009977 181 QVDLAQNFLKYSNQHLRLKPN--TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAI 258 (521)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 258 (521)
..+.++.-+.+++......|+ ...|..+...|...|++++|...|++..+..+ .+...|+.++..+...|++++|+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP--DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence 334444444444432222222 34566666667777777777777777766665 45666777777777777777777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009977 259 ELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 338 (521)
..|++.++.. +-+..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 7777776542 3345566666666667777777777777766643 22211112222233455667777766554332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CC---CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 339 LLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERG---CK---ADIVTFNIILGGLCREGKIEEALGMLEKLWYDG 409 (521)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 409 (521)
..++...+ .+ .....|+..++ ..+..+.+.. +. ....+|..+...+.+.|++++|...|+++...+
T Consensus 195 -~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 -LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 12222111 11 12223444333 2333332210 00 022355566666666666666666666666543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-09 Score=97.28 Aligned_cols=194 Identities=13% Similarity=0.009 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCF 354 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 354 (521)
.|..+...+...|++++|...|++.++.. +.+...|+.+...+...|++++|...|++..+. .|+ ..+|..+..++
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34444445555555555555555555543 334455555555555555555555555555542 222 44445555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHH
Q 009977 355 CRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAI 434 (521)
Q Consensus 355 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (521)
...|++++|++.|+...+..+. +. ........+...++.++|...|.+..... .++...+ .+.. ...|+..++
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHH-
Confidence 5555555555555555544321 11 11111111223445555555554433221 1111111 1111 122333222
Q ss_pred HHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 435 ELLRLMLCR---G--FLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 435 ~~~~~~~~~---~--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
..++.+.+. . +.| ....|..+...+.+.|++++|...|++..+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 122222211 0 011 23455566666666666666666666666554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-08 Score=85.12 Aligned_cols=194 Identities=13% Similarity=0.074 Sum_probs=134.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEG 323 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 323 (521)
.+..+...|+...|+.....+++. .+-|...+..-..+|...|++..|+.-++...+.. ..+..++..+...+...|
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhh
Confidence 445566788999999999998876 36678888888899999999999988888877765 456777778888889999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHH----HHH-------H--HHHHHhcCCHHHHHHHHHHHHHcCCCCcHh---HHHHHHH
Q 009977 324 KLQEAKEVFDEMKNFLLKPDTIG----YTT-------L--INCFCRAGRVDEALELLKEMKERGCKADIV---TFNIILG 387 (521)
Q Consensus 324 ~~~~A~~~~~~~~~~~~~~~~~~----~~~-------l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~ 387 (521)
+.+.++...++..+ +.||-.. |.. + +......++|.++++-.+...+..+..... .+..+..
T Consensus 238 d~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 238 DAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred hHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 99999988888876 3455322 111 1 112344566777777777666654332222 2334455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 388 GLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
++...|++.+|++.-.+++..... |..++.--..+|.....++.|+.-|+.+.+.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 556667777777777777765322 4666777777777777778888877777743
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-09 Score=102.59 Aligned_cols=236 Identities=18% Similarity=0.136 Sum_probs=143.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNN-----GC-NPNVF-NYTTLMNGFCKEGKLQEAKEVFDEMKNF-----LL-KP 342 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~ 342 (521)
+...+...|...|++++|+.+++..++. |. .|... ..+.+...|...+++++|..+|+++... |. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344555555555555555555554432 10 11111 1223556666667777776666665431 11 11
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CcH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCc
Q 009977 343 D-TIGYTTLINCFCRAGRVDEALELLKEMKER-----GCK-ADI-VTFNIILGGLCREGKIEEALGMLEKLWYD---GIY 411 (521)
Q Consensus 343 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~ 411 (521)
. ..+++.|..+|.+.|++++|...+++..+. +.. |.. ..++.++..|...+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 345566666677777777776666655432 111 111 23556667777788888888887766542 111
Q ss_pred c----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 009977 412 L----NKASYRIVLNFSCQKGELEKAIELLRLMLCR------GFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVE--- 477 (521)
Q Consensus 412 ~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 477 (521)
+ -..+++.|...|...|++++|.+++++++.. +..+ ....++.+...|.+.+.+++|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 2346778888888888888888888887742 1122 345567788888888888888888876543
Q ss_pred -CCC-CCCH-HHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 478 -MGF-KPES-DSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 478 -~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
.|. .|+. .+|..|+..|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 332 2333 678888999999999999998888776
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.5e-10 Score=104.87 Aligned_cols=250 Identities=18% Similarity=0.123 Sum_probs=175.2
Q ss_pred hhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccc-----cCCCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 009977 122 TYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPI-----TREKPSLKA-ISTCLNLLIESNQVDLAQNFLKYSNQH 195 (521)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~ 195 (521)
...+.|.-..+...+...|...|++++|+.++++.... +-..|...+ ...+...|...+++++|..+|+.++.-
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33444555556667888899999999998888876532 112444443 334677888889999888888887641
Q ss_pred ----CC-CCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 009977 196 ----LR-LKPN-TCIFNILIKHHCKRGTLESAFEVLKEMKK-----SQMSYPNLI-TYSTLIDGLCKNGRFREAIELFEE 263 (521)
Q Consensus 196 ----~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 263 (521)
.| ..|. ..+++.|..+|.+.|++++|...+++..+ .+...+.+. .++.++..+...+++++|..++++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 12 2233 34788888899999999888877776532 122223333 356677788889999999998887
Q ss_pred HHhcCC--CCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CCCCcchHHHHHHHHHhcCCHHHHHH
Q 009977 264 MVSKDQ--ILP----DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG-------CNPNVFNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 264 ~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (521)
..+... ..+ -..+++.|...|...|++++|.++++.++... .......++.+...|.+.+.+.+|.+
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 654311 222 24678999999999999999999998887531 11223456778888999999999998
Q ss_pred HHHHHHh----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 331 VFDEMKN----FLL-KPD-TIGYTTLINCFCRAGRVDEALELLKEMK 371 (521)
Q Consensus 331 ~~~~~~~----~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 371 (521)
+|.+... .|. .|+ ..+|..|...|.+.|+++.|+++.+...
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8876432 222 233 5778899999999999999999888765
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-08 Score=91.98 Aligned_cols=94 Identities=13% Similarity=0.166 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH--HHHHHHHHH
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PDT--IGYTTLINC 353 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~ 353 (521)
...+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++....... ++. ..|..+...
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3344445555666666666666665543 334445555555666666666666666555442211 111 223345555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 009977 354 FCRAGRVDEALELLKEMK 371 (521)
Q Consensus 354 ~~~~~~~~~A~~~~~~~~ 371 (521)
+...|++++|..++++..
T Consensus 196 ~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 196 YLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 556666666666666554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-08 Score=92.35 Aligned_cols=307 Identities=12% Similarity=0.033 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL-ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
...|..+...+...|+.+.+.+.+....+..+...+. .........+...|++++|.+++++..+.. |.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-
Confidence 4467777777777888888777777766554422232 223333456677899999999999988763 445544442
Q ss_pred HHHHHh----CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009977 281 IDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356 (521)
Q Consensus 281 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (521)
...+.. .+..+.+.+.+.... ...+........+...+...|++++|...+++..+... .+...+..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence 223333 344455555554411 11122233444566788999999999999999988542 246778888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CcH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-ccCHHHH-H--HHHHHHHcCCC
Q 009977 357 AGRVDEALELLKEMKERGCK-ADI--VTFNIILGGLCREGKIEEALGMLEKLWYDGI-YLNKASY-R--IVLNFSCQKGE 429 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~ 429 (521)
.|++++|...+++....... ++. ..|..+...+...|++++|..+++++..... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999998875432 222 3455788889999999999999999864422 1111111 1 22333333443
Q ss_pred HHHHHHH--HHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHcc
Q 009977 430 LEKAIEL--LRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFK------P--ESDSWALLVELICRG 497 (521)
Q Consensus 430 ~~~a~~~--~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~ 497 (521)
.+.+.+. +.......... ..........++...|+.++|...++.+...... . ..........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3322222 11111111111 1122234667778899999999999988753211 0 112222333455689
Q ss_pred CcHHHHHHHHHHHHHc
Q 009977 498 RKLLFAFELLDELVIK 513 (521)
Q Consensus 498 g~~~~A~~~~~~m~~~ 513 (521)
|++++|.+.+.+.+..
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-09 Score=102.67 Aligned_cols=274 Identities=15% Similarity=0.161 Sum_probs=200.4
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhcccc
Q 009977 81 IFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPIT 160 (521)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (521)
++-.+ +..|+.|+.+||..+|.-|+..|+.+.|- +|.-|.....+.+...+..++....+.++.+.+.
T Consensus 12 fla~~-e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALH-EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHH-HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 33444 56799999999999999999999999888 9999988888888899999999988888765443
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHH
Q 009977 161 REKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLIT 240 (521)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 240 (521)
.|.+.+|..+..+|...||+.. |+...+ ....+...+...|.-.....++..+.-.+...||..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq---------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~- 143 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ---------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE- 143 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH----HHHHHH---------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH-
Confidence 6788899999999999999876 222211 123345566677777777777766543322124433
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG-KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGF 319 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (521)
+.+....-.|-++.+++++..+.......|... +++-+.... .+++-..+.....+ .++..+|..++..-
T Consensus 144 --n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 144 --NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRA 214 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHH
Confidence 344455667888888888877654322222222 233333322 33333333333332 58999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 009977 320 CKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK 394 (521)
Q Consensus 320 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (521)
...|+.+.|..++.+|.+.|+..+..-|-.++.+ .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999988887766666554 78888999999999999999999999988888887655
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-07 Score=100.39 Aligned_cols=373 Identities=14% Similarity=0.049 Sum_probs=229.1
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
...+...|++.+|...+..... ...-..............|+++.+..+++.+... ....++.........+...|
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCC
Confidence 3344555666666665554421 0000111222234455678888777777655211 11122223344555667889
Q ss_pred ChHHHHHHHHHHHhCCCC-----CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHH
Q 009977 217 TLESAFEVLKEMKKSQMS-----YPN--LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD----ALTYNVLIDGFC 285 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 285 (521)
++++|...+......-.. .+. ......+...+...|++++|...+++...... ..+ ....+.+...+.
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHH
Confidence 999999999887543111 011 12223344566789999999999999876321 112 134466667778
Q ss_pred hCCCHHHHHHHHHHHHHcCC---CCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHH
Q 009977 286 RGGKVDRAKKIMEFMKNNGC---NPN--VFNYTTLMNGFCKEGKLQEAKEVFDEMKNF----LLK--P-DTIGYTTLINC 353 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~ 353 (521)
..|++++|...+.+...... .+. ..+...+...+...|++++|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 89999999999988875311 111 234456677888999999999998876542 211 1 12334455666
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CccCHH--HH--HHHHHH
Q 009977 354 FCRAGRVDEALELLKEMKER----GCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDG--IYLNKA--SY--RIVLNF 423 (521)
Q Consensus 354 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~ 423 (521)
+...|++++|...+.+.... +.......+..+...+...|++++|...++.+.... ...... .. ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 77789999999998887653 111123345556677888999999999998875431 111111 10 112234
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLPH---YATSNELLVRLCKAGMAEDAAIALFGLVEM----GFKPES-DSWALLVELIC 495 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~ 495 (521)
+...|+.+.|...+........... ...+..+..++...|++++|...++++.+. |...+. .+...+..++.
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~ 742 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW 742 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 4568999999998877653211111 111345677888999999999999988752 322222 45667778889
Q ss_pred ccCcHHHHHHHHHHHHHcC
Q 009977 496 RGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~~ 514 (521)
+.|+.++|.+.+.++++..
T Consensus 743 ~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 743 QQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999998753
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-07 Score=98.74 Aligned_cols=341 Identities=12% Similarity=0.016 Sum_probs=218.7
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-----CCc--HHHHHHHH
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRL-----KPN--TCIFNILI 209 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~--~~~~~~l~ 209 (521)
.......|+++.+..+++.+... ....+..........+...|+++++..++..+.+.... .+. ......+.
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 33455668888887877776421 11122223334455566789999999998877542211 111 22333445
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCCHHHHHHHH
Q 009977 210 KHHCKRGTLESAFEVLKEMKKSQMSYPNL----ITYSTLIDGLCKNGRFREAIELFEEMVSKDQ----ILPDALTYNVLI 281 (521)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~ 281 (521)
..+...|++++|...+++....... .+. ...+.+...+...|++++|...+++...... ......++..+.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 6677899999999999998764221 222 3446677778889999999999988865311 111123456667
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc----CCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHH
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN----GCNP---NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL--LKPD--TIGYTTL 350 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~--~~~~~~l 350 (521)
..+...|+++.|...+++.... +... ....+..+...+...|++++|...+++..... ..+. ...+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7888999999999998877652 2111 12234456667788899999999998775421 1122 3344456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCccCH---HHHHHHH
Q 009977 351 INCFCRAGRVDEALELLKEMKERGCKA-DIVTF-----NIILGGLCREGKIEEALGMLEKLWYDGIYLNK---ASYRIVL 421 (521)
Q Consensus 351 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~ 421 (521)
...+...|++++|...+.......... ....+ ...+..+...|+.+.|..++............ ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 667788999999999998875431110 11111 11224455688999999988776543211111 1134566
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 422 NFSCQKGELEKAIELLRLMLCR----GFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
.++...|++++|...++++... |..+ ...+...+..++.+.|+.++|...+.++++..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7788899999999999988753 3222 23455667778889999999999999998753
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-07 Score=80.98 Aligned_cols=199 Identities=12% Similarity=0.060 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH-HHHHHHHH
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL-ITYSTLID 246 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~ 246 (521)
-...+...+...|++..|+..|..+++ +.+.+-.++..-...|...|+-..|+.=+.+..+.. ||- ..-..-..
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---pDF~~ARiQRg~ 114 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---PDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---ccHHHHHHHhch
Confidence 344455666666666666666666543 222222233444556666666666666666666543 232 12222344
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC-CHHH------------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHH
Q 009977 247 GLCKNGRFREAIELFEEMVSKDQILP-DALT------------YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYT 313 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 313 (521)
.+.+.|.+++|..-|+.++......- .... ....+..+...|+...|+.....+++.. +.+...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 55666667777666666665421000 0001 1112223334455555555555555543 34444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009977 314 TLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKER 373 (521)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 373 (521)
.-..+|...|+...|+.=++...+..- .+......+-..+...|+.+.++...++.++.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 555555555555555554444443211 12333334444445555555555555555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-07 Score=80.38 Aligned_cols=395 Identities=12% Similarity=0.060 Sum_probs=245.0
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHH-HHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFL-NLMKH 139 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~ 139 (521)
.+++++..+.+..++..|++++..-.++. +.+....+.+..+|.+..++..|...++++-... |...-|. .-...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 46778888899999999999998765553 4477888899999999999999999999987653 3333332 34556
Q ss_pred HHccCcHHHHHHHHHhhccccCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC
Q 009977 140 FSNCSLHERVLEMFHKIHPITREKPSLK--AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT 217 (521)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 217 (521)
+.+.+.+.+|+++...|.. .++.. ....-.......+++..+..++++... +.+..+.+...-...+.|+
T Consensus 88 LY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~----en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS----ENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccC----CCccchhccchheeecccc
Confidence 6788999999999988852 22221 122222344467888889888887631 2355566777777889999
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------------CCH----------
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQIL-------------PDA---------- 274 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~---------- 274 (521)
++.|.+-|+...+-+.- .....|+. .-++.+.|+++.|+++..++++++ +. ||.
T Consensus 160 yEaAvqkFqaAlqvsGy-qpllAYni-ALaHy~~~qyasALk~iSEIieRG-~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGY-QPLLAYNL-ALAHYSSRQYASALKHISEIIERG-IRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred HHHHHHHHHHHHhhcCC-CchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhh-hhcCCccCccceeccCchhcccchHHHH
Confidence 99999999999887663 45566664 456778899999999999998763 21 221
Q ss_pred -----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009977 275 -----LTYNVLIDGFCRGGKVDRAKKIMEFMKNN-GCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYT 348 (521)
Q Consensus 275 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 348 (521)
..+|.-...+.+.++++.|.+.+-.|.-+ ....|+.|...+.-.= ..+++-+..+-+.-+.+..+- ...++.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHH
Confidence 12333344566788999998888777532 1234666666554322 234455555555555554443 367888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc
Q 009977 349 TLINCFCRAGRVDEALELLKEMKERGCK-ADIVTFNIILGGLCR-EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ 426 (521)
Q Consensus 349 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (521)
.++-.||+..-++-|-+++-+-...... .+...|+ ++.++.. .-..++|++-++.+...-.. .......-+..-..
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~-kLRklAi~vQe~r~ 392 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTE-KLRKLAIQVQEARH 392 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 8889999999999998887653221100 1223333 3334333 34667777666555432000 00111111111111
Q ss_pred CCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 427 KGE---LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 427 ~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.++ +..+++-+++.++. . ..+..+-...+.+..++..+.+.|..-.+.
T Consensus 393 ~~dd~a~R~ai~~Yd~~LE~-Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 393 NRDDEAIRKAVNEYDETLEK-Y---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred cccHHHHHHHHHHHHHHHHH-H---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 121 12223333333322 1 122333445667888899999998876654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-06 Score=85.25 Aligned_cols=262 Identities=17% Similarity=0.222 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
.+|..+..+-.+.|.+.+|.+-|-+. .|+..|..++....+.|.|++-.+++....++ ...|... ..|+-
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 34555555555555555554444321 33444555555555555555555555444333 1223222 34445
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE 362 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 362 (521)
+|++.++..+.++++. -||......+..-|...+.++.|.-+|.. +..|..+...+...|++..
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHH
Confidence 5555555444333321 24444444455555555555555444443 3345566666666777777
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 363 ALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 363 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
|.+.-++. .+..+|..+..+|...+.+.-| ++...++-....-...++..|-..|.+++.+.+++..+
T Consensus 1239 AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L- 1306 (1666)
T KOG0985|consen 1239 AVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL- 1306 (1666)
T ss_pred HHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh-
Confidence 66544432 1556787777777766554333 23223334455567788888999999999999888877
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCC------CCHHHHHHHHHHHHccCcHHHHH
Q 009977 443 RGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVE-MGFK------PESDSWALLVELICRGRKLLFAF 504 (521)
Q Consensus 443 ~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~------~~~~~~~~l~~~~~~~g~~~~A~ 504 (521)
|+.- +...|..|.-.|++- ++++..+.++-... .+++ .....|..++-.|.+-..++.|.
T Consensus 1307 -GLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1307 -GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred -chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 5443 666777777677654 34444444333221 1111 12245667777777666666553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-07 Score=84.52 Aligned_cols=421 Identities=14% Similarity=0.112 Sum_probs=227.9
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
....-+.++.+.+.+++|+.+.+.-. +...+..-+---+.+..+.+..++|...++... +.+..+...-...+
T Consensus 48 a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvl 120 (652)
T KOG2376|consen 48 AIRCKVVALIQLDKYEDALKLIKKNG---ALLVINSFFFEKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVL 120 (652)
T ss_pred hHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhhHHHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHH
Confidence 44555667788899999996655431 111111111233456678999999999998332 22344666677788
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC--cHHHHHHHHHHHHhcCCh
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP--NTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 218 (521)
.+.|++++|+++|+.+.......-+...-..++.+-.. -.+. +.+.. ...| +-..+....-.+...|++
T Consensus 121 Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~v----~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 121 YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQSV----PEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHhc----cCCCcchHHHHHHHHHHHHhcccH
Confidence 89999999999999996322222222222222222111 1111 22222 2222 233444456677889999
Q ss_pred HHHHHHHHHHHhCCCC-----CCC---H-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH----HHHH
Q 009977 219 ESAFEVLKEMKKSQMS-----YPN---L-----ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTY----NVLI 281 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~-----~~~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~l~ 281 (521)
.+|++++....+.+.. ..+ . .....+...+...|+.++|..+|...+... ++|.... |.++
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLv 269 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLV 269 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc--CCCchHHHHHhcchh
Confidence 9999999988322110 011 1 112345667788999999999999998874 5554322 3333
Q ss_pred HHHHhCCCHH-HHHHHHHHHHH-----------cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 009977 282 DGFCRGGKVD-RAKKIMEFMKN-----------NGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT 349 (521)
Q Consensus 282 ~~~~~~~~~~-~a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 349 (521)
.+-....-++ .++..++.... .........-+.++..| .+..+.+.++...... ..|.. .+..
T Consensus 270 a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ 344 (652)
T KOG2376|consen 270 ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPES-LFPI 344 (652)
T ss_pred hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHH
Confidence 2211111111 11222221111 00000111111222222 3334444444443322 22332 2333
Q ss_pred HHH-HH-HhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCccCHHHHHH
Q 009977 350 LIN-CF-CRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLE--------KLWYDGIYLNKASYRI 419 (521)
Q Consensus 350 l~~-~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~ 419 (521)
++. +. ++...+..|.+++...-+....-........++.....|+++.|.+++. .+.+.+. .+.+...
T Consensus 345 ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~a 422 (652)
T KOG2376|consen 345 LLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGA 422 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHH
Confidence 333 22 2223466777777776655433234455666777788889988888888 3333333 3345556
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC--CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009977 420 VLNFSCQKGELEKAIELLRLMLCR--GFLPHYATS----NELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVEL 493 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (521)
+...+.+.++.+.|..++.+++.. .-.+..... ..++..-.+.|.-++|..+++++.+.. ++|..+...++.+
T Consensus 423 iv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 423 IVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHH
Confidence 666677777766677776666632 111111222 223333346788888999998888754 5777888888888
Q ss_pred HHccCcHHHHHHHHH
Q 009977 494 ICRGRKLLFAFELLD 508 (521)
Q Consensus 494 ~~~~g~~~~A~~~~~ 508 (521)
|++. +.+.|..+-.
T Consensus 502 ~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 502 YARL-DPEKAESLSK 515 (652)
T ss_pred HHhc-CHHHHHHHhh
Confidence 7764 3355555433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.9e-11 Score=73.98 Aligned_cols=49 Identities=55% Similarity=1.070 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 009977 342 PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLC 390 (521)
Q Consensus 342 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (521)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444455555555555555555555555555555555555555554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-06 Score=84.35 Aligned_cols=53 Identities=25% Similarity=0.169 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 464 MAEDAAIALFGLVEMGFKPES----DSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
+..+.++-.+.|++....|+. ..|..|++.+....+|..|-+.+++|..+.|.
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 555566666666665444432 67889999999999999999999999988764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=72.82 Aligned_cols=49 Identities=37% Similarity=0.742 Sum_probs=26.5
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 377 ADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-07 Score=89.84 Aligned_cols=187 Identities=10% Similarity=0.025 Sum_probs=119.1
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHH
Q 009977 73 KEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEM 152 (521)
Q Consensus 73 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 152 (521)
++...|+..|-+.++.. +-=...|..|...|...-+...|.+.|++.-+.+ +.+..+...+...|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 34667777776665442 1123557788888877777788888888877665 44556667788888888888888887
Q ss_pred HHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009977 153 FHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQ 232 (521)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 232 (521)
.-...+......-...|....-.|.+.++...|+.-|+...+ --+.|...|..++.+|..+|.+..|.++|++.....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 443322111111122233344456667777777777777653 233466788888888888888888888888776654
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 233 MSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
| .+...---.....+..|.+.+|+..+...+.
T Consensus 627 P--~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 P--LSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred c--HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3 2222222233445667778888777776654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.1e-09 Score=95.66 Aligned_cols=140 Identities=18% Similarity=0.054 Sum_probs=74.0
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 222 FEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
.++|-++....+...|...+..|.-.|.-.|++++|++.|+.++.. -|-|...||.|...++...+..+|+..|.+++
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 3334444333332345555555666666666666666666666554 24455566666666666666666666666666
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 009977 302 NNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL---------LKPDTIGYTTLINCFCRAGRVDEAL 364 (521)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~ 364 (521)
+.. |.-+.+...|.-.|...|.+++|.+.|-.++... ..++...|..|=.++.-.++.|.+.
T Consensus 492 qLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 492 QLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 543 2234455556666666666666666554432210 1122345555555555555555433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-09 Score=93.27 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=8.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 009977 208 LIKHHCKRGTLESAFEVLKEMK 229 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~ 229 (521)
.+.+|.+.++++.|.+.++.|.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-07 Score=85.71 Aligned_cols=192 Identities=13% Similarity=0.082 Sum_probs=132.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH-------
Q 009977 312 YTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI------- 384 (521)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------- 384 (521)
...++++..+..+++.|++-+....+.. -+..-++....+|...|.+.++...-....+.|.. ...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3456777778888888888888877743 35555677777888888888877777666666533 2233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 009977 385 ILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHY-ATSNELLVRLCKAG 463 (521)
Q Consensus 385 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 463 (521)
+..+|.+.++++.+..+|.+.......|+. ..+....++++....... -+.|.. .-...-...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a--~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKA--YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHhcc
Confidence 334555667788888888887665333322 223344455555554443 234422 12222367788999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 464 MAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
++..|+..|.+++... +.|...|....-+|.+.|.+..|++-.+..++.+|..+
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~ 426 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFI 426 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHH
Confidence 9999999999999875 55668899999999999999999999999999877643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-07 Score=92.12 Aligned_cols=151 Identities=16% Similarity=0.110 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP-DTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
|++.-+...|-+-.... +.+..+|..+.-.+.+..+++.|...|...+.. .| +...|-.........|+.-++..+
T Consensus 830 gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 830 GNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred chhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444443333322 334445555555566677777777777776653 23 345555554445556666666666
Q ss_pred HHHH--HH--cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCccCHHHHHHHHHHHHcCCCHHHH
Q 009977 367 LKEM--KE--RGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD---------GIYLNKASYRIVLNFSCQKGELEKA 433 (521)
Q Consensus 367 ~~~~--~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a 433 (521)
|..- .. .|--++..-|.........+|+.++-+...+++... +..-+...|.......-+.+.+..|
T Consensus 907 faHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a 986 (1238)
T KOG1127|consen 907 FAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAA 986 (1238)
T ss_pred HHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHH
Confidence 6552 11 122233333333334444556555544433333211 2222445566666666666667777
Q ss_pred HHHHHHHH
Q 009977 434 IELLRLML 441 (521)
Q Consensus 434 ~~~~~~~~ 441 (521)
.+...+.+
T Consensus 987 ~ela~Rli 994 (1238)
T KOG1127|consen 987 LELATRLI 994 (1238)
T ss_pred HHHHHHHH
Confidence 66666654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-07 Score=88.49 Aligned_cols=75 Identities=15% Similarity=0.021 Sum_probs=36.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (521)
+..|-+.|..+..+++.++-... .-..|...+..-+...|+.+.|..-|-++- -|.+-++.|...+.|
T Consensus 857 iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw 924 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELW 924 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhH
Confidence 34444444444444444332211 112333444555555666666665554442 233445566666666
Q ss_pred HHHHHHH
Q 009977 466 EDAAIAL 472 (521)
Q Consensus 466 ~~a~~~~ 472 (521)
++|.++-
T Consensus 925 ~dayria 931 (1636)
T KOG3616|consen 925 EDAYRIA 931 (1636)
T ss_pred HHHHHHH
Confidence 6665553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-06 Score=83.45 Aligned_cols=394 Identities=14% Similarity=0.096 Sum_probs=214.4
Q ss_pred CCChHHHHHH--HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhcc--------CCc
Q 009977 59 FISHGAAISL--IKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYET--------CKF 128 (521)
Q Consensus 59 ~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~ 128 (521)
..+...++.. |..-|+.+.|.+-.+.+ .+...|..|.+.|.+.++.+-|.-.+..|.... ...
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3445555543 55678888887776665 256789999999999998888877776664211 111
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHH
Q 009977 129 HEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNIL 208 (521)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 208 (521)
+...-..+.-...+.|..++|+.+|.+.. -|..+-..|-..|.+++|.++-+.-- .+.. -.+|...
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ck----------R~DLlNKlyQs~g~w~eA~eiAE~~D---RiHL-r~Tyy~y 864 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCK----------RYDLLNKLYQSQGMWSEAFEIAETKD---RIHL-RNTYYNY 864 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHH----------HHHHHHHHHHhcccHHHHHHHHhhcc---ceeh-hhhHHHH
Confidence 11222334445567899999999998875 35555667778899999998876421 2221 2367777
Q ss_pred HHHHHhcCChHHHHHHHHHH----------HhCCCC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 009977 209 IKHHCKRGTLESAFEVLKEM----------KKSQMS--------YPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQI 270 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~----------~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 270 (521)
...+-..++.+.|++.|++. ....++ ..|...|.=....+-..|+.+.|+.+|..+.+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 77777888899998888763 222210 01222233333334445666666666655432
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----C---CC
Q 009977 271 LPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL-----L---KP 342 (521)
Q Consensus 271 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~---~~ 342 (521)
|-.++...|-.|+.++|-++-++ . .|......|.+.|-..|++.+|...|-++.... + ..
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~ 1008 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM 1008 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34455555556677776665543 2 245566667777777788887777776654210 0 00
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHH--------HHHC--CCcc
Q 009977 343 DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEK--------LWYD--GIYL 412 (521)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~~--~~~~ 412 (521)
+...+|..+ .....+.-.|-.+|++. |. -+...+..|-+.|.+.+|+++--+ +... ....
T Consensus 1009 ~d~L~nlal--~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1009 KDRLANLAL--MSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred HHHHHHHHh--hcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 011111100 11112222333344332 11 112233445566666665543211 1111 2334
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCH----HHH
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV-EMGFKPES----DSW 487 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~----~~~ 487 (521)
|+...+.-...++...++++|..++-...+ |...+..|...+ ..-..++-+.|. ..+-.|+. ..+
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVL 1148 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHH
Confidence 566666666777777777777777665543 222333333222 222222222222 11112333 345
Q ss_pred HHHHHHHHccCcHHHHHHHHHH
Q 009977 488 ALLVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~~ 509 (521)
..+.+.|.++|.+..|.+=|.+
T Consensus 1149 eqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHhh
Confidence 5666777777877777655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-08 Score=91.71 Aligned_cols=258 Identities=15% Similarity=0.064 Sum_probs=192.5
Q ss_pred HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-cHHHHHHHHHHHH
Q 009977 135 NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP-NTCIFNILIKHHC 213 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 213 (521)
....-+.+.|+..+|.-.|+... ...+.+..+|..|.......++-..|+..++++++ +.| +..+...|.-.|.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAV--kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAV--KQDPQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHH--hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHh
Confidence 34445667888888888888875 34466677888888888888888888888888764 344 5678888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYP-------NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR 286 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (521)
..|.-..|++.++......+++. +...-.. ..+.....+....++|-++....+..+|+.....|.-.|.-
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 89988999999888766553210 0000000 12333444566677777776665555788888899889999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 009977 287 GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEALE 365 (521)
Q Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 365 (521)
.|++++|.+.|+.++... |.|...|+.|...++...+..+|+..|.++++ +.|. +.+...|.-.|...|.+++|.+
T Consensus 443 s~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred chHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 999999999999999876 66788999999999999999999999999998 5677 6677778888999999999999
Q ss_pred HHHHHHHc---------CCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 009977 366 LLKEMKER---------GCKADIVTFNIILGGLCREGKIEEALGML 402 (521)
Q Consensus 366 ~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 402 (521)
.|-..+.. ...++...|..|=.++.-.++.|-+....
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 88776532 12234467777777777777776554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.8e-09 Score=91.11 Aligned_cols=252 Identities=17% Similarity=0.122 Sum_probs=158.3
Q ss_pred HHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHH
Q 009977 104 KLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVD 183 (521)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 183 (521)
-+.-.|++..+..-.+ ......+.......-+.++|...|+++.++.-... ...|....+..+...+...++-+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-----~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK-----SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-----TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc-----CCChhHHHHHHHHHHHhCccchH
Confidence 3344666666665544 22222122233444566677777776655433322 22555555544444443334555
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009977 184 LAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEE 263 (521)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 263 (521)
.+..-++..........+.........++...|++++|++++... .+.......+..+.+.++++.|.+.++.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555554433222234444445556777889999999887642 4667777888999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009977 264 MVSKDQILPDALTYNVLIDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL 339 (521)
Q Consensus 264 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 339 (521)
|.+. ..|. +...++.++.. .+.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.+.....
T Consensus 157 ~~~~---~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 157 MQQI---DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHCC---SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHhc---CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 9754 3343 44445555443 34789999999998765 46788888999999999999999999999987654
Q ss_pred CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 009977 340 LKPDTIGYTTLINCFCRAGRV-DEALELLKEMKERG 374 (521)
Q Consensus 340 ~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~ 374 (521)
. .+..+...++.+....|+. +.+.+++.++....
T Consensus 232 ~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 232 P-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred c-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 3 2566777777777778887 66777888887763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.6e-07 Score=85.26 Aligned_cols=192 Identities=22% Similarity=0.281 Sum_probs=98.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR 253 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (521)
..+...|+++.|...|-... .....+.+.....+|.+|+.+++.+..+.. -...|..+...|...|+
T Consensus 714 ~hl~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~d 780 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGD 780 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchh
Confidence 34444555555555543321 122234455556667777777776665432 23345566666777777
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 009977 254 FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFD 333 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 333 (521)
++.|.++|.+.- .++..|.+|.+.|+|..|.++-.+.. |.......|..-..-+-+.|++.+|++++-
T Consensus 781 fe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 781 FEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 777777765431 23445566777777777766655443 212333344444455555666666666654
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 009977 334 EMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGML 402 (521)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 402 (521)
.+.. |+. .+.+|-+.|..+..+++.++-... .-..|...+..-|-..|+...|...|
T Consensus 849 ti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 849 TIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred EccC----chH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 4332 332 244555555555555544432211 01223344444444455555544444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.3e-08 Score=91.14 Aligned_cols=222 Identities=13% Similarity=0.053 Sum_probs=161.8
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHH
Q 009977 127 KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFN 206 (521)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 206 (521)
+|-...-..+...+...|-...|+.+|+++. .|..++.+|...|+..+|..+..+.++ -+||+..|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc 461 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYC 461 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHH
Confidence 4444455567777788888888888888774 677778888888888888888777653 467788888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 009977 207 ILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR 286 (521)
Q Consensus 207 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (521)
.+++.....--+++|.++.+..-. .+...+.....+.++++++.+.|+.-.+.+ +.-..+|..+..+..+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sa--------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALq 531 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISA--------RAQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQ 531 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhH--------HHHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHH
Confidence 888887777778888888775432 222333333455788888888888777764 3445677778888888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 287 GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
.++++.|.+.|....... +.+...|+.+..+|.+.++..+|...+.+..+.+ .-+...|...+......|.+++|++.
T Consensus 532 lek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 532 LEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 888888888888877654 5566788888888888888888888888888765 33455666666677788888888888
Q ss_pred HHHHHHc
Q 009977 367 LKEMKER 373 (521)
Q Consensus 367 ~~~~~~~ 373 (521)
+.++...
T Consensus 610 ~~rll~~ 616 (777)
T KOG1128|consen 610 YHRLLDL 616 (777)
T ss_pred HHHHHHh
Confidence 8877653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.3e-07 Score=81.25 Aligned_cols=204 Identities=8% Similarity=0.038 Sum_probs=92.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH--
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG-RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV-- 290 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 290 (521)
..++.++|+.+++++....+ .+..+|+....++...| ++++++..++++...+ +-+..+|+.....+.+.|..
T Consensus 49 ~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhh
Confidence 34455555555555555444 34444444444444444 3455555555555432 23333444433333333331
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRA---GR----VDEA 363 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~A 363 (521)
+++..+++.+++.. +-+..+|.....++...|+++++++.++++.+.++. +..+|+.....+.+. |. .+++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 34445555555443 334445555555555555555555555555543322 334444433333222 11 2344
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 364 LELLKEMKERGCKADIVTFNIILGGLCRE----GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
+.+..+++...+. |...|+.+...+... +...+|...+.++...++. +...+..|+..|+
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~ 266 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence 5555455544333 445555555555442 2234455555554443322 4444555555554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.2e-07 Score=81.27 Aligned_cols=213 Identities=11% Similarity=0.068 Sum_probs=114.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG-KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGF 319 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (521)
+..+-..+...++.++|+.++.+++... +-+..+|+....++...| ++++++..++++.+.. +.+..+|+....++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 3344444555667777777777777653 334445555555555555 4677777777776654 44555565555455
Q ss_pred HhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc---CC
Q 009977 320 CKEGKL--QEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCRE---GK 394 (521)
Q Consensus 320 ~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 394 (521)
.+.|+. +++..+++++.+... .+..+|+....++...|+++++++.++++++.++. +..+|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 555542 455666666665432 24666666666666666777777777777666554 555565555554443 11
Q ss_pred H----HHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 395 I----EEALGMLEKLWYDGIYLNKASYRIVLNFSCQK----GELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 395 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
. ++.+.+..+++...+. |...|+.+...+... +...+|...+.+..+.+ ..+...+..|++.|+
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 1 3444555455444332 445555555555442 22344555555544321 113334444444444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-05 Score=72.55 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 009977 360 VDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYL-NKASYRIVLNFSCQKGELEKAIELLR 438 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (521)
.+....+++++...-..--..+|..++..-.+....+.|..+|.++.+.+..+ +...+++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44555555555543222123456677777777777888888888888876555 5556666776554 577788888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 439 LMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES--DSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 439 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
--++. +..++..-...++-+...++-..+..+|++.+..++.++. ..|..+++--..-|+...+.++-+++...-+
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 76643 3334455566777777888888888888888876555554 6788888877778888888877777665433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-07 Score=88.14 Aligned_cols=220 Identities=14% Similarity=0.059 Sum_probs=164.9
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009977 271 LPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTL 350 (521)
Q Consensus 271 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 350 (521)
+|-...-..+...+.+.|-...|..+++++. .|...+.+|...|+..+|..+..+..+ -+||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3333344566677778888888888887664 455678888888888888888887766 36778888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCH
Q 009977 351 INCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGEL 430 (521)
Q Consensus 351 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (521)
.+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.++- ...+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhh
Confidence 88777666778888877765432 2222222233468888888888887776432 567788888888888999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHH
Q 009977 431 EKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 431 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 509 (521)
+.|.+.|...+. ..| +...||.+-.+|.+.|+-.+|...+.+..+.+ ..+...|...+....+-|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999888873 566 67788999999999999999999998888876 45556777777778889999999999888
Q ss_pred HHH
Q 009977 510 LVI 512 (521)
Q Consensus 510 m~~ 512 (521)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 876
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-06 Score=81.11 Aligned_cols=323 Identities=18% Similarity=0.228 Sum_probs=218.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHH-HHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHH
Q 009977 94 NNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEG-IFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTC 172 (521)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 172 (521)
|+...+..+.++...+-+.+..++++++.-.+...+.. .+..++-.-+-.-+..++.+..+++.. -+.| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdn--yDa~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDN--YDAP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhcc--CCch------hH
Confidence 44445555666666666666666766665443222211 111222222222345555555555531 1122 23
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
...+..++-+++|..+|++. ..+..+.+.|+. ..+.++.|.+.-++. .....|..+..+-.+.|
T Consensus 1055 a~iai~~~LyEEAF~ifkkf------~~n~~A~~VLie---~i~~ldRA~efAe~~-------n~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF------DMNVSAIQVLIE---NIGSLDRAYEFAERC-------NEPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh------cccHHHHHHHHH---HhhhHHHHHHHHHhh-------CChHHHHHHHHHHHhcC
Confidence 44556667778888888754 235555555554 456777777766554 34568999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 009977 253 RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVF 332 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 332 (521)
...+|++-|-+. .|+..|..+++...+.|.+++-.+++....+....|.. =..|+-+|++.++..+-++++
T Consensus 1119 ~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred chHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh
Confidence 999999887654 25678899999999999999999998888877655544 457888999999888766554
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc
Q 009977 333 DEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYL 412 (521)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 412 (521)
. .|+......+..-|...+.++.|.-+|. +...|..|...+...|++..|.+.-+++.
T Consensus 1190 ~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------ 1247 (1666)
T KOG0985|consen 1190 A-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKAN------ 1247 (1666)
T ss_pred c-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------
Confidence 3 4777777888888889999998887775 34567888888899999998887665542
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
+..+|..+-.+|...+.+.-| .|-...+.....-+..++.-|...|-+++-+.+++..+
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 567899998888877766543 23322333466677778888888888888888776543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-06 Score=89.07 Aligned_cols=206 Identities=13% Similarity=0.078 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD---ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTT 314 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 314 (521)
...|...|..+...++.++|.++.++++..-++.-. ...|.++++.-..-|.-+...++|+++.+.. ....+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 344444444444455555555555444432111100 1123333333333344444444444444421 12223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcC
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA-DIVTFNIILGGLCREG 393 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 393 (521)
|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.++++.-++- ........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 444444444444444444444432 11233444444444444444444444444444331110 1122222333333444
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 009977 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP 447 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 447 (521)
+.+.+..+|+......++ ....|+.+++.-.++|+.+.+..+|++++..++.|
T Consensus 1615 DaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 444444444444443222 23344444444444444444444444444444333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.4e-07 Score=89.93 Aligned_cols=227 Identities=14% Similarity=0.100 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP---NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTL 244 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 244 (521)
.|-..+....+.++.++|.++.++++..-++.- -...|.++++.-..-|.-+...++|+++.+.. .....|..|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V~~~L 1536 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYTVHLKL 1536 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHHHHHH
Confidence 344444444444555555555554443222111 12356666666666666666777777766532 223456667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CcchHHHHHHHHHhc
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNP--NVFNYTTLMNGFCKE 322 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 322 (521)
...|.+.+.+++|.++|+.|.++.+ .....|...+..+.+.++-+.|..++.++++.- +. ......-.++.-++.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhc
Confidence 7777777777777777777776643 445667777777777777777777777766541 11 233444455566677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHhcCCHHHHHH
Q 009977 323 GKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADI--VTFNIILGGLCREGKIEEALG 400 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~ 400 (521)
|+.+.+..+|+.....-+ .....|+..+.+-.++|+.+.+..+|+++...++.|.. ..|..-+..--..|+-+.+..
T Consensus 1614 GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 777777777777665322 24667777777777777777777777777777655432 345555555555565444443
Q ss_pred H
Q 009977 401 M 401 (521)
Q Consensus 401 ~ 401 (521)
+
T Consensus 1693 V 1693 (1710)
T KOG1070|consen 1693 V 1693 (1710)
T ss_pred H
Confidence 3
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.2e-07 Score=78.17 Aligned_cols=188 Identities=12% Similarity=0.042 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-HHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN-LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA-LTYNV 279 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~ 279 (521)
...+..++..+...|++++|...|+++....+..+. ..++..++.++...|++++|+..++++.+..+-.+.. .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 445555555555666666666666655554432111 1244555555666666666666666665543211211 12333
Q ss_pred HHHHHHhC--------CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009977 280 LIDGFCRG--------GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLI 351 (521)
Q Consensus 280 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 351 (521)
+..++... |++++|.+.++.+.+.. +.+......+..... .. ... ......+.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~--------~~~~~~~a 173 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRL--------AGKELYVA 173 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHH--------HHHHHHHH
Confidence 33344332 45666666666665542 112112211111000 00 000 00011344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-C-cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 352 NCFCRAGRVDEALELLKEMKERGCK-A-DIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
..|.+.|++++|+..++...+.... | ....+..++.++...|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566667777777666666654221 1 2345666666677777777777666665543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7e-07 Score=74.49 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009977 171 TCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK 250 (521)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (521)
.+-..+...|+-+....+...... ..+.|....+.++....+.|++..|...|++.....+ +|...|+.+..+|.+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p--~d~~~~~~lgaaldq 146 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP--TDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC--CChhhhhHHHHHHHH
Confidence 334444444554444444444321 2223334444455555555555555555555555444 455555555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 009977 251 NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (521)
.|++++|..-|.+..+.. +-+...++.+.-.+.-.|+.+.|..++......+ .-+..+-..+.......|+++.|..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 147 LGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 555555555555555442 2233344555555555555555555555554443 2244444455555555555555555
Q ss_pred HHH
Q 009977 331 VFD 333 (521)
Q Consensus 331 ~~~ 333 (521)
+..
T Consensus 224 i~~ 226 (257)
T COG5010 224 IAV 226 (257)
T ss_pred hcc
Confidence 443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-07 Score=78.99 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=33.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 279 VLIDGFCRGGKVDRAKKIMEFMKNNGC--NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
.+...+.+.|++++|...+..+.+... +.....+..++.++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455666666666666666655420 11234555666666666666666666665554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.2e-07 Score=74.80 Aligned_cols=159 Identities=13% Similarity=0.015 Sum_probs=90.4
Q ss_pred HHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 134 LNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 134 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
..+-..+...|+-+....+..... .....+.......+......|++.+|...++++.. .-++|..+|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSA--IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhh--ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 444444445555555555544432 22233334444455555666666666666665543 34556666666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 293 (521)
+.|+++.|..-|.+..+..+ .+....+.+...+.-.|+.+.|..++....... .-|...-..+.......|+++.|
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~--~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 146 QLGRFDEARRAYRQALELAP--NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HccChhHHHHHHHHHHHhcc--CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHH
Confidence 66666666666666666554 345556666666666666666666666665431 33455556666666666666666
Q ss_pred HHHHHHH
Q 009977 294 KKIMEFM 300 (521)
Q Consensus 294 ~~~~~~~ 300 (521)
.++...-
T Consensus 222 ~~i~~~e 228 (257)
T COG5010 222 EDIAVQE 228 (257)
T ss_pred Hhhcccc
Confidence 6655443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.8e-06 Score=69.56 Aligned_cols=118 Identities=20% Similarity=0.220 Sum_probs=58.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh--
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR-- 286 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 286 (521)
+..|++.|++++|++..... .+......=...+.+..+++-|.+.+++|.+.+ +..|.+-|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id----ed~tLtQLA~awv~la 183 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID----EDATLTQLAQAWVKLA 183 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHh
Confidence 34455555566655555431 222233333334455555555555555554432 33444444444433
Q ss_pred --CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009977 287 --GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 287 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 338 (521)
.+.+..|.-+|++|.++ .+|++.+.+-.+.++...|++++|..+++.....
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23455555555555543 2455555555555555555555555555555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-05 Score=67.50 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 360 VDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
..+|.-+|++|.++ ..|+..+.+..+.++...|++++|..+++.++..
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 44444444444332 2234444444444444444444444444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-06 Score=73.87 Aligned_cols=155 Identities=11% Similarity=0.086 Sum_probs=112.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKI 395 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (521)
+..|...|+++......+.+.. |. ..+...++.++++..++...+..+. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 4567888888876554433221 11 0122366778888888888777654 788888888999999999
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHH-HHcCCC--HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 396 EEALGMLEKLWYDGIYLNKASYRIVLNF-SCQKGE--LEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIA 471 (521)
Q Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 471 (521)
++|...+++..+.... +...+..+..+ +...|+ .++|.++++++++. .| +...+..+...+.+.|++++|...
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999988887554 67777777775 356676 58999999998854 45 677788888888899999999999
Q ss_pred HHHHHHCCCCCCHHHH
Q 009977 472 LFGLVEMGFKPESDSW 487 (521)
Q Consensus 472 ~~~~~~~~~~~~~~~~ 487 (521)
|+++++.. +|+..-+
T Consensus 167 ~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhhC-CCCccHH
Confidence 99988764 4444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-06 Score=72.58 Aligned_cols=119 Identities=12% Similarity=0.097 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HhcCC--hHH
Q 009977 180 NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL-CKNGR--FRE 256 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 256 (521)
++.+++...++..++ .-+.+...|..+...|...|++++|...|++..+..+ .+...+..+..++ ...|+ .++
T Consensus 53 ~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 53 QTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred hhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 344444444444433 2234455666666666666666666666666655554 3555555555543 44444 356
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 257 AIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 257 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
|.+++++..+.+ +.+...+..+...+.+.|++++|+..|+++.+..
T Consensus 129 A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666665542 3344555555555566666666666666665543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.1e-06 Score=84.21 Aligned_cols=239 Identities=13% Similarity=0.103 Sum_probs=148.4
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHH
Q 009977 163 KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYS 242 (521)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 242 (521)
+.+...+..++..+...+++++|.++.+...+. .+-....|..++..+.+.++.+++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 555567777788777888888888887766542 222233455555566666665544433
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 009977 243 TLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE 322 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (521)
.++.......++.-...++..+... .-+...+..++.+|-+.|+.++|..+|+++++.. +.|+.+.+.++..|...
T Consensus 88 ~~l~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 NLIDSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 2233333344443333444444332 3345577788888888888888888888888876 66778888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 009977 323 GKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGML 402 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 402 (521)
++++|++++.++... +...+++.++.++|.++....+. +...+ ..+.
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~ 210 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIE 210 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHH
Confidence 888888888777652 55666777888888877776332 22222 2222
Q ss_pred HHHHHC-CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 009977 403 EKLWYD-GIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLC 460 (521)
Q Consensus 403 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 460 (521)
+++... +..--..++-.+-..|...++++++..+++.+++. .| |......++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 222222 22223344555666677778888888888888853 44 5555555666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00015 Score=67.10 Aligned_cols=438 Identities=13% Similarity=0.096 Sum_probs=253.2
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHH
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLM 137 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (521)
|+.+|..||.-+..+ ..+++++.++++.. .++..+..|..-+....+.++++..+.+|.+.+..- .+...|...+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 577999999988777 89999999999864 356778889999999999999999999999988653 3334444333
Q ss_pred HHHHc-cCcH----HHHHHHHHhhccccCC-CCCHhHHHHHHH---------HHHhcCCHHHHHHHHHHhhhcCCCCCcH
Q 009977 138 KHFSN-CSLH----ERVLEMFHKIHPITRE-KPSLKAISTCLN---------LLIESNQVDLAQNFLKYSNQHLRLKPNT 202 (521)
Q Consensus 138 ~~~~~-~g~~----~~a~~~~~~~~~~~~~-~~~~~~~~~ll~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 202 (521)
.--.+ .|+. +...+.|+-.....+. ..+...|...+. -+.++.+++...+++++++... + .+.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP-m-~nl 171 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP-M-HNL 171 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc-c-ccH
Confidence 32111 1222 3334445444322222 222223443332 2333445667778888776421 1 111
Q ss_pred -HHHHHH------HHHH-------HhcCChHHHHHHHHHHHh--CCCC-----CCC---------HHHHHHHHHHHHhcC
Q 009977 203 -CIFNIL------IKHH-------CKRGTLESAFEVLKEMKK--SQMS-----YPN---------LITYSTLIDGLCKNG 252 (521)
Q Consensus 203 -~~~~~l------~~~~-------~~~g~~~~A~~~~~~~~~--~~~~-----~~~---------~~~~~~l~~~~~~~g 252 (521)
..|+.. ++.. -+...+..|.++++++.. .|.. .|. +..|..+|.--..++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 122211 1111 123456677777777542 2221 010 112333332211111
Q ss_pred ------C--hHHHHHHHHHHHhcCCCCCCHHHH-----HHHHHHHHhCCC-------HHHHHHHHHHHHHcCCCCCcchH
Q 009977 253 ------R--FREAIELFEEMVSKDQILPDALTY-----NVLIDGFCRGGK-------VDRAKKIMEFMKNNGCNPNVFNY 312 (521)
Q Consensus 253 ------~--~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 312 (521)
. .....-.+++.+.--+..|+.... ....+.+...|+ -+++..++++.+..-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011222233322221222322110 111122223333 45666666666543222233333
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHHHHHHHH
Q 009977 313 TTLMNGFC---KEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA-DIVTFNIILGG 388 (521)
Q Consensus 313 ~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~ 388 (521)
..+...-- +.+..+....+++++.......-..+|..++..-.+..-+..|..+|.++.+.+..+ +....++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 33332211 112355666677766653222224567778888888888999999999999987776 66677777776
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHH
Q 009977 389 LCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAE 466 (521)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 466 (521)
+| .++.+-|.++|+.-++. ..-++.--...+..+...++-..+..+|++.+..++.| ...+|..++.--..-|+..
T Consensus 412 ~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 66 57889999999987765 22244555677888889999999999999999886666 5688999999989999999
Q ss_pred HHHHHHHHHHHC-C--CCCCHHHHHHHHHHHHccCcHHHHH
Q 009977 467 DAAIALFGLVEM-G--FKPESDSWALLVELICRGRKLLFAF 504 (521)
Q Consensus 467 ~a~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~ 504 (521)
.+.++-+++... . ..+....-..+++.|.-.+.+..-.
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 988887776532 1 2333334445566665555554333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.5e-06 Score=82.54 Aligned_cols=160 Identities=11% Similarity=0.034 Sum_probs=121.1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHH
Q 009977 163 KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITY 241 (521)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 241 (521)
..+..++..+..+..+.|.+++|..+++.+.+ ..|+ ......++..+.+.+++++|+..+++.....+ .+....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p--~~~~~~ 157 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS--SSAREI 157 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--CCHHHH
Confidence 44577888888888889999999999988874 4454 55788888888899999999999999888877 577778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 009977 242 STLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321 (521)
Q Consensus 242 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (521)
..+..++.+.|++++|+.+|+++... .+-+..++..+..++...|+.++|...|+...+.- .+....|+..+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~----- 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL----- 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH-----
Confidence 88888888999999999999998874 24457788888888888999999999998888753 33334444433
Q ss_pred cCCHHHHHHHHHHHH
Q 009977 322 EGKLQEAKEVFDEMK 336 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~ 336 (521)
++...-...++++.
T Consensus 230 -~~~~~~~~~~~~~~ 243 (694)
T PRK15179 230 -VDLNADLAALRRLG 243 (694)
T ss_pred -HHHHHHHHHHHHcC
Confidence 23334444555554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.5e-07 Score=71.37 Aligned_cols=107 Identities=18% Similarity=0.014 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 365 ELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
.++++..+. ++..+..+...+...|++++|...|+.+....+. +...|..+..++...|++++|...|+.+.+.
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 356666665 3333556677788888888888888888876544 6777888888888888888888888888853
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 445 FLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 445 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.| +...+..+..++...|++++|...|++.++.
T Consensus 88 -~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 -DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45 7777788888888888888888888888776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5e-05 Score=69.40 Aligned_cols=143 Identities=21% Similarity=0.243 Sum_probs=96.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
..-.+...|++++|+..++.+.+..| .|+..+......+.+.++.++|.+.++++.... +........+..++.+.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P--~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~ 387 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQP--DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhc
Confidence 34445567777777777777776655 466666667777777777777777777777653 22355566677777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELL 367 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 367 (521)
|++.+|+.+++...... +.|+..|..|.++|...|+..++.....+ .|...|++++|+..+
T Consensus 388 g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l 448 (484)
T COG4783 388 GKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFL 448 (484)
T ss_pred CChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHH
Confidence 77777777777776654 66777777777777777777766554433 334567777777776
Q ss_pred HHHHHc
Q 009977 368 KEMKER 373 (521)
Q Consensus 368 ~~~~~~ 373 (521)
....+.
T Consensus 449 ~~A~~~ 454 (484)
T COG4783 449 MRASQQ 454 (484)
T ss_pred HHHHHh
Confidence 666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-06 Score=69.65 Aligned_cols=95 Identities=9% Similarity=-0.064 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
+..+...+...|++++|...|+......+ .+...|..++.++...|++++|+..|++....+ +.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD--ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHH
Confidence 33455566666666666666666666555 456666666666666666666666666666542 44555666666666
Q ss_pred HhCCCHHHHHHHHHHHHHc
Q 009977 285 CRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~ 303 (521)
...|++++|+..|+..++.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-05 Score=80.53 Aligned_cols=169 Identities=11% Similarity=0.111 Sum_probs=111.8
Q ss_pred cCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHH
Q 009977 128 FHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNI 207 (521)
Q Consensus 128 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 207 (521)
.....+..|+..|...+++++|.++.+...+..+..+.. |......+.+.++.+.+..+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv------------------~ 88 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL------------------N 88 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh------------------h
Confidence 356688899999999999999999999775433333333 33333366677776555544 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
++.......++..+..+.+.+...+ .+..++..++.+|-+.|+.++|..+|+++++.+ +-|+.+.|.+...|...
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh
Confidence 2333334444544444444444432 344567778888888888888888888888764 66777788888888777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
+.++|++++.++... +...+++.++.++|.++..
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 888888888777654 4445566666666666655
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-05 Score=66.58 Aligned_cols=163 Identities=15% Similarity=0.198 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009977 169 ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL 248 (521)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (521)
+..++-+....|+.+.|...++.+..++ +.+..+-..-+-.+-..|++++|.++++.+...++ .|..++..-+...
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHHHHHHH
Confidence 4445555666777777777777765543 33333333333344556777777777777777665 4666666666666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC---CH
Q 009977 249 CKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEG---KL 325 (521)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 325 (521)
-..|+.-+|++.+.+..+. +..|...|.-+...|...|++++|.-.+++++-.. |.++..+..+...+.-.| +.
T Consensus 131 ka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHH
Confidence 6677777777777777664 56777777777777777777777777777777654 445555555665555444 34
Q ss_pred HHHHHHHHHHHhC
Q 009977 326 QEAKEVFDEMKNF 338 (521)
Q Consensus 326 ~~A~~~~~~~~~~ 338 (521)
+-|.++|.+..+.
T Consensus 208 ~~arkyy~~alkl 220 (289)
T KOG3060|consen 208 ELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHh
Confidence 5566666666653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00042 Score=68.10 Aligned_cols=219 Identities=13% Similarity=0.111 Sum_probs=108.3
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHH
Q 009977 71 CEKEPQCALEIFNTVSEQKGFNHNNATYATILD--KLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHER 148 (521)
Q Consensus 71 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (521)
..+++.+|++..++.+++. |+.. |..++. .+.+.|+.++|..+++.....+. .|..++..+-..|...|++++
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 3456666777776665553 2222 222223 33566777777766666654442 255566666666677777777
Q ss_pred HHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHH----HHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc-CC------
Q 009977 149 VLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDL----AQNFLKYSNQHLRLKPNTCIFNILIKHHCKR-GT------ 217 (521)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~------ 217 (521)
|..+|++.. ...|+......+..+|++.+++.+ |.++++.. +-+...+=.+++.+.+. ..
T Consensus 96 ~~~~Ye~~~---~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~------pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 96 AVHLYERAN---QKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF------PKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHH---hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CcccchHHHHHHHHHHhccCCccccc
Confidence 777777663 335555555666666666665533 33444321 22222222222222221 11
Q ss_pred ---hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009977 218 ---LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFE-EMVSKDQILPDALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 218 ---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 293 (521)
..-|.+.++.+.+.+....+..-...-...+...|++++|++++. ...+. -...+...-+.-+..+...+++.+.
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHH
Confidence 122444555554443111222222222333445666777776663 22222 1222333334455555666666666
Q ss_pred HHHHHHHHHcC
Q 009977 294 KKIMEFMKNNG 304 (521)
Q Consensus 294 ~~~~~~~~~~~ 304 (521)
.++-.++...|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 66666666655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.3e-06 Score=82.64 Aligned_cols=135 Identities=13% Similarity=0.022 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHH
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIST 171 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (521)
+.+...+..|..+..+.|++++|+.+++...+.. |.+...+..++..+.+.+++++|+..+++.. ...+.+......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l--~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYF--SGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHh--hcCCCCHHHHHH
Confidence 4445556666666666666666666666666553 3444555556666666666666666666654 222333444455
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKS 231 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 231 (521)
+..++.+.|++++|..+|+++.. ..+.+..++..+...+...|+.++|...|++..+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555566666666666666553 12223455566666666666666666666665543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.6e-05 Score=61.54 Aligned_cols=189 Identities=12% Similarity=0.076 Sum_probs=112.9
Q ss_pred cCChHHHHHHHHHhhhCC--C-CCCCHHH-HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHH
Q 009977 72 EKEPQCALEIFNTVSEQK--G-FNHNNAT-YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHE 147 (521)
Q Consensus 72 ~~~~~~A~~~~~~~~~~~--~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (521)
..++++.++++..+.... | ..++..+ |..++-+....|+.+-|...++.+..+- |-+......-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 356777777777765332 2 3344433 5555556667777788888887776653 323222222222344457777
Q ss_pred HHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009977 148 RVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKE 227 (521)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 227 (521)
+|+++|+.+. ..++.|..++..-+.+.-..|+--+|++-+....+ .+..|...|.-+...|...|++++|.-.+++
T Consensus 104 ~A~e~y~~lL--~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 104 EAIEYYESLL--EDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hHHHHHHHHh--ccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 8888877776 33344455555555555666666666666665554 3556777777777777777777777777777
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhc
Q 009977 228 MKKSQMSYPNLITYSTLIDGLCKNG---RFREAIELFEEMVSK 267 (521)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 267 (521)
+.-..| .+...+..+...+.-.| +..-|.++|.+.++.
T Consensus 180 ~ll~~P--~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQP--FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 766655 35555555555444433 345566666666654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-07 Score=52.83 Aligned_cols=32 Identities=38% Similarity=0.745 Sum_probs=24.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 197 RLKPNTCIFNILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.5e-06 Score=64.94 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
....++..+...|++++|.+.|+.+...++ .+...|..+...+...|++++|...+++..... +.+...+..+...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~ 94 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHH
Confidence 344444555555555555555555544443 344455555555555555555555555554431 3334444444555
Q ss_pred HHhCCCHHHHHHHHHHHHHc
Q 009977 284 FCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~ 303 (521)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00018 Score=64.19 Aligned_cols=281 Identities=15% Similarity=0.024 Sum_probs=166.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccC
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (521)
....+.+..++..|+..+..++... +.+..-|..-+..+...|++++|.--.+.-.+.. +-.........+++...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence 3445677788999999998887543 4456667777777777888888777666555443 112234445555666666
Q ss_pred cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHH-HHHHHhcCChHHHHH
Q 009977 145 LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNIL-IKHHCKRGTLESAFE 223 (521)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 223 (521)
+..+|.+.++.-. .+ ....++..++.+.....-+|....+-.+ ..++.-.|++++|.+
T Consensus 132 ~~i~A~~~~~~~~----------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ----------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred HHHHHHHHhhhhh----------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 6666666655221 00 1122333333333322233444444444 345566788888888
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH----------HHHHHHHHHhCCCHHHH
Q 009977 224 VLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALT----------YNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a 293 (521)
+--.+.+.+. .+....-.-..++.-.++.+.|...|++.+..++-..+..+ +..-.+-..+.|++..|
T Consensus 191 ea~~ilkld~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 191 EAIDILKLDA--TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHHhccc--chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 7777776554 34444333344555677788888888887765322111111 12223345567888888
Q ss_pred HHHHHHHHHcC---CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 294 KKIMEFMKNNG---CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEALELLKE 369 (521)
Q Consensus 294 ~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 369 (521)
.+.|.+.+... ..++...|.....+..+.|+..+|+.--....+. .+. ...+..-..++...++|++|++-++.
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887643 2334445666666777888888888877777652 211 22333334456667788888888887
Q ss_pred HHHc
Q 009977 370 MKER 373 (521)
Q Consensus 370 ~~~~ 373 (521)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 7665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.3e-07 Score=52.13 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHh
Q 009977 90 GFNHNNATYATILDKLARYKKFEAVDAVLRQM 121 (521)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 121 (521)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777888888888888888888888877776
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-05 Score=62.97 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFC 320 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (521)
...++..+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+..+|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3344444444455555555554444331 2334444444444444445555555444444433 333444444444444
Q ss_pred hcCCHHHHHHHHHHHHh
Q 009977 321 KEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 321 ~~~~~~~A~~~~~~~~~ 337 (521)
..|++++|...|+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45555555555544444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00072 Score=64.55 Aligned_cols=192 Identities=10% Similarity=0.023 Sum_probs=101.1
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhc-cCCcCHHHHH------HHHHHHHccCcH
Q 009977 74 EPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYE-TCKFHEGIFL------NLMKHFSNCSLH 146 (521)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~------~l~~~~~~~g~~ 146 (521)
..++|.++.+. .|.+..|..+.......-.++.|+..|-+.... |++.-..... .-...-+--|.+
T Consensus 678 gledA~qfiEd-------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~f 750 (1189)
T KOG2041|consen 678 GLEDAIQFIED-------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEF 750 (1189)
T ss_pred chHHHHHHHhc-------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcch
Confidence 35666666433 367778877777665555666666666544322 2211000000 001111224788
Q ss_pred HHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 147 ERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLK 226 (521)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 226 (521)
++|.++|-.+.. -...+..+.+.|++-...++++.--.......-..+|+.+...+.....|++|.+.|.
T Consensus 751 eeaek~yld~dr----------rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 751 EEAEKLYLDADR----------RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hHhhhhhhccch----------hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876642 1234556667778777777776421100011113467777777777777777777776
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009977 227 EMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIME 298 (521)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (521)
.-.. ....+.++.+...+++-+.+-..+. .+....-.+..++.+.|.-++|.+.|-
T Consensus 821 ~~~~----------~e~~~ecly~le~f~~LE~la~~Lp------e~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 821 YCGD----------TENQIECLYRLELFGELEVLARTLP------EDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred hccc----------hHhHHHHHHHHHhhhhHHHHHHhcC------cccchHHHHHHHHHhhchHHHHHHHHH
Confidence 4321 1124455555555555444444332 233444555566666666666655443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00011 Score=67.31 Aligned_cols=120 Identities=17% Similarity=0.096 Sum_probs=64.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009977 175 LLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRF 254 (521)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 254 (521)
.+...|++++|+..++.+++ ..+.|+..+......+.+.|+.++|.+.++++....+ .....+..+..++.+.|++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P--~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDP--NSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CccHHHHHHHHHHHhcCCh
Confidence 34445555666655555553 2333444555555556666666666666666555543 2244455555566666666
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 255 REAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 255 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
.+|+.+++..... .+.|+..|..|..+|...|+..++.....+.
T Consensus 391 ~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 391 QEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6666666555543 2445555555655555555555554444333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.003 Score=62.43 Aligned_cols=201 Identities=12% Similarity=0.091 Sum_probs=133.5
Q ss_pred ChHHHHHHH--HhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 61 SHGAAISLI--KCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 61 ~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
.+..++.++ .+.|..++|..+++.. ...+ ..|..|...+-.+|.+.++.++|..+|+...... |+......+..
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~-~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFm 118 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEAL-YGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhh-ccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHH
Confidence 555666664 5789999999888875 3332 3488899999999999999999999999999764 55888888999
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcC----------CHHHHHHHHHHhhhcCCCCCcHHHHHHH
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESN----------QVDLAQNFLKYSNQHLRLKPNTCIFNIL 208 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l 208 (521)
+|.+.+++.+-.++--++.+. .+.+...+-.++..+.+.. -...|.+..+.+.+..|--.+..-....
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 999988876554443333221 1233344445554444321 1245667777776654311122222233
Q ss_pred HHHHHhcCChHHHHHHHHH-HHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 209 IKHHCKRGTLESAFEVLKE-MKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
...+...|++++|++++.. ..+.-.. .+...-+.-+..+...++|.+..++-.++..++
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l~~-~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKLTS-ANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4455678889999999844 3333322 455555666777888888998888888888764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.35 E-value=4e-05 Score=61.03 Aligned_cols=127 Identities=16% Similarity=0.065 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYL--NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH--YATSNELL 456 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~ 456 (521)
.|..++..+ ..++...+...++.+......- .......+...+...|++++|...|+.+......|. ......+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444443 3566666666666666653221 112233344566667777777777777776542221 12334456
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 009977 457 VRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDEL 510 (521)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 510 (521)
..+...|++++|...++..... ......+...+++|.+.|++++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777777553322 223345556667777777777777777664
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-05 Score=71.36 Aligned_cols=124 Identities=16% Similarity=0.153 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009977 169 ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL 248 (521)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 248 (521)
...++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++.....+ .+..........+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p--~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENP--QDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 333444444445555555555555432 122 233344555555555555555555554443 3444444445555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 249 CKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 249 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
.+.++++.|+++.+++... .|.+..+|..|..+|.+.|+++.|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555555555543 23334455555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.8e-05 Score=70.84 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
....|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|++++++.+.. .+.|...+......
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 44455666666777777777777777654 23 3344666666777777777777777754 24566666666777
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
+.+.++++.|+++.+++.+.. +.+-.+|..|+.+|.+.|+++.|+..+..+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777887777777764 4445577777778888888887777777654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.3e-05 Score=59.92 Aligned_cols=87 Identities=22% Similarity=0.301 Sum_probs=34.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNL--ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (521)
+...+...|++++|...|+.+....+. ++. .....+...+...|++++|+..++.... .......+......|.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~ 129 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPD-PELKPLARLRLARILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYL 129 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHH
Confidence 334444444444444444444443321 111 1222334444444444444444433211 1122233344444444
Q ss_pred hCCCHHHHHHHHH
Q 009977 286 RGGKVDRAKKIME 298 (521)
Q Consensus 286 ~~~~~~~a~~~~~ 298 (521)
+.|++++|...|+
T Consensus 130 ~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 130 AQGDYDEARAAYQ 142 (145)
T ss_pred HCCCHHHHHHHHH
Confidence 4444444444444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00018 Score=64.31 Aligned_cols=281 Identities=14% Similarity=0.029 Sum_probs=132.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
........+.+...+.+|+..+....+..+ .++.-|..-+..+...|++++|.--.+.-.+.. +-..........+
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~p--d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c 126 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCP--DNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQC 126 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCc--cchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhh
Confidence 334445556666667777777777766665 345556666666666666666666555444321 1112233444444
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHhcCCHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLL-KPDTIGYTTL-INCFCRAGRVD 361 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~ 361 (521)
+...++..+|...++.-. .+ ....|+..++....... .|.-..|..+ ..++.-.|+.+
T Consensus 127 ~~a~~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hhhhHHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch
Confidence 444555555554444111 00 00111111111111111 1222223222 22344456666
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHH---HH----------HHHHHcCC
Q 009977 362 EALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYR---IV----------LNFSCQKG 428 (521)
Q Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l----------~~~~~~~g 428 (521)
+|...--.+++.... +......-..++...++.+.+...|++.+..++ +...-. .. ..-..+.|
T Consensus 187 ~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 187 EAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred hHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 666555555444221 222222222233344556666666665554422 211111 11 11234566
Q ss_pred CHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCcHHH
Q 009977 429 ELEKAIELLRLMLCRGFLP-----HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRGRKLLF 502 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 502 (521)
++.+|.+.|.+.+ ++.| +...|.....+..+.|+.++|+.-.+..++. .+.. ..+..-..++...++|++
T Consensus 264 ~y~~A~E~Yteal--~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 264 NYRKAYECYTEAL--NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred chhHHHHHHHHhh--cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766 3333 4444545555556667777776666665543 1211 233333344455667777
Q ss_pred HHHHHHHHHHcCc
Q 009977 503 AFELLDELVIKES 515 (521)
Q Consensus 503 A~~~~~~m~~~~~ 515 (521)
|.+-++++.+...
T Consensus 340 AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 340 AVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHhhcc
Confidence 7777776666543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.8e-05 Score=58.94 Aligned_cols=99 Identities=17% Similarity=0.047 Sum_probs=42.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q 009977 419 IVLNFSCQKGELEKAIELLRLMLCRGFL-P-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFK--PESDSWALLVELI 494 (521)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 494 (521)
.++..+...|++++|...|+.+....-. + ....+..+..++.+.|++++|...++++...... .....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3334444445555555555554432100 0 1223333444555555555555555554432100 0123344444455
Q ss_pred HccCcHHHHHHHHHHHHHcCccC
Q 009977 495 CRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 495 ~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
.+.|+.++|...++++++..|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCC
Confidence 55555555555555555544443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00057 Score=54.16 Aligned_cols=150 Identities=10% Similarity=0.036 Sum_probs=89.0
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHH
Q 009977 68 LIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHE 147 (521)
Q Consensus 68 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (521)
...+.=|++..++-..+... ..|++.....|...+.+.|+..+|...|++...--+..+...+..+.++....+++.
T Consensus 65 a~~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 65 ALQQKLDPERHLREATEELA---IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 33444455544433332221 245666666777778888888888888887776544556666777777777777787
Q ss_pred HHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 009977 148 RVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFE 223 (521)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 223 (521)
.|..+++.+.+......++.....+.+.+...|++..|..-|+.++. .-|+..........+.++|+.+++..
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 77777777754333333334455556666666666666666666653 23444444444455556665555443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00011 Score=56.43 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CCHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSY-PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQIL-PDALTYNVLI 281 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~ 281 (521)
++..++..+.+.|++++|.+.|+.+....+.. .....+..++.++.+.|++++|.+.|+.+....+.. .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 33444455555555555555555555433210 112334445555555555555555555554432111 1123444455
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555555555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.1e-05 Score=57.80 Aligned_cols=98 Identities=8% Similarity=-0.034 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
......+...+...|++++|..+|+.+...++ -+..-|..|..++-..|++++|+..|......+ +.|+..+..+.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHH
Confidence 34555566667777888888888887777665 566777777777777888888888887777653 45666777777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.++...|+.+.|.+.|+..+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888777776654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0001 Score=57.51 Aligned_cols=96 Identities=10% Similarity=-0.107 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009977 380 VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRL 459 (521)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 459 (521)
...-.+...+...|++++|.++|+.+...++. +..-|..|..++-..|++++|+..|..+.... +.++..+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34445556666777888888888777766443 55666777777777788888888887777543 22666677777777
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009977 460 CKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 460 ~~~g~~~~a~~~~~~~~~ 477 (521)
...|+.+.|.+.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 778888888777777664
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00033 Score=57.69 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQILPD-ALTYNVLIDGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (521)
+..++..+...|++++|...|++..+....+++ ...+..+...+.+.|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444444432111111 23344444444444444444444444444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00025 Score=63.65 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKK 230 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 230 (521)
+..++..+.+.|++++|.++|+++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444555555555555555555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0019 Score=51.33 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCc-cCHHHHHH
Q 009977 341 KPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIY-LNKASYRI 419 (521)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 419 (521)
.|++..--.|..++...|++.+|...|++....-..-|......+.++....+++..|...++++.+..+. -++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444444555566666666666666666554433445555556666666666666666666666554210 12233444
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 420 VLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIAL 472 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 472 (521)
+...+...|.+.+|...|+.++. ..|+...-......+.+.|+.+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 55556666666666666666653 3444433333444455555555544433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00011 Score=53.64 Aligned_cols=97 Identities=15% Similarity=0.075 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009977 417 YRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICR 496 (521)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (521)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3444555566677777777777666431 2233555566666667777777777777666543 2333566666677777
Q ss_pred cCcHHHHHHHHHHHHHcCc
Q 009977 497 GRKLLFAFELLDELVIKES 515 (521)
Q Consensus 497 ~g~~~~A~~~~~~m~~~~~ 515 (521)
.|++++|...+++..+.++
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 7777777777777665543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=1e-05 Score=57.48 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=8.2
Q ss_pred HHHHHHhCCCHHHHHHHHHH
Q 009977 280 LIDGFCRGGKVDRAKKIMEF 299 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~ 299 (521)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0013 Score=59.15 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=45.8
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc------chH
Q 009977 244 LIDGLCKN-GRFREAIELFEEMVSKDQILPD----ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNV------FNY 312 (521)
Q Consensus 244 l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~ 312 (521)
+...|... |++++|++.|++..+......+ ..++..++..+.+.|++++|.++|++........+. ..+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33444455 6677777777666442100001 233455566666777777777777666553222111 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 313 TTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
...+-++...||...|...+++...
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2233345556666666666666554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00012 Score=53.35 Aligned_cols=90 Identities=24% Similarity=0.255 Sum_probs=38.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
++..+...|++++|...++++.+..+ .+...+..+...+...|++++|.+.++...... +.+...+..+...+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHH
Confidence 33444444444444444444444332 222334444444444444444444444444321 22223344444444444
Q ss_pred CCHHHHHHHHHHHH
Q 009977 288 GKVDRAKKIMEFMK 301 (521)
Q Consensus 288 ~~~~~a~~~~~~~~ 301 (521)
|+++.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 44444444444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0096 Score=53.27 Aligned_cols=287 Identities=14% Similarity=0.122 Sum_probs=153.3
Q ss_pred cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHHHhhhcCCCCCcHHH--HHHHHHHHHhcCCh
Q 009977 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNL--LIESNQVDLAQNFLKYSNQHLRLKPNTCI--FNILIKHHCKRGTL 218 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~ 218 (521)
.|+-..|.++-.+-.. ....|...+..++.+ -.-.|+++.|.+-|+.|... |.... ...|.-..-+.|..
T Consensus 97 AGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccH
Confidence 4555555555444321 112233333333322 22356666666666666431 22211 11222223356777
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH--HHHHHHHHH---hCCCHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALT--YNVLIDGFC---RGGKVDRA 293 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~---~~~~~~~a 293 (521)
+.|...-+......+ .-...+...+...+..|+|+.|+++++.-....-+.++..- -..|+.+-. -..+...|
T Consensus 171 eaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 171 EAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 777777776665544 34456677777777888888888877766544333444321 112222111 12245556
Q ss_pred HHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 294 KKIMEFMKNNGCNPNVF-NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKE 372 (521)
Q Consensus 294 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 372 (521)
...-.+..+. .|+.. .-..-...+++.|+..++-.+++.+-+....|+ .+ ..|.....-+.++.-+++..+
T Consensus 249 r~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar~gdta~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRARSGDTALDRLKRAKK 320 (531)
T ss_pred HHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhcCCCcHHHHHHHHHH
Confidence 6555555443 34432 223345677888888888888888776544443 22 223333333333333333322
Q ss_pred c-CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCC
Q 009977 373 R-GCKA-DIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ-KGELEKAIELLRLMLCRGFLP 447 (521)
Q Consensus 373 ~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~p 447 (521)
. ..+| +......+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++.+.+.+.++..-+|
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 1 1122 4556666777777788887777666655543 5666677777665443 488888888888877654444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.017 Score=55.74 Aligned_cols=214 Identities=10% Similarity=0.096 Sum_probs=131.4
Q ss_pred chHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHH----------HHHhcC
Q 009977 111 FEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLN----------LLIESN 180 (521)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~----------~~~~~~ 180 (521)
.++|.+..+. .|.+..|..+.......-.++-|...|-+... -+.......+-. .-.--|
T Consensus 679 ledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d----Y~Gik~vkrl~~i~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 679 LEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD----YAGIKLVKRLRTIHSKEQQRAEISAFYG 748 (1189)
T ss_pred hHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc----ccchhHHHHhhhhhhHHHHhHhHhhhhc
Confidence 4556555544 46777888777777777778888888877643 333323222222 222358
Q ss_pred CHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009977 181 QVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIEL 260 (521)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 260 (521)
++++|+++|-.+-++ ...+..+.+.|+|-.+.++++.--...-...-...|+.+...+.....|++|.++
T Consensus 749 ~feeaek~yld~drr----------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRR----------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred chhHhhhhhhccchh----------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999888766332 3346778888999877777653211100001245788899999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009977 261 FEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLL 340 (521)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 340 (521)
|..-... ...+.++.+..++++-+.+...+ +.+....-.+.+++.+.|.-++|.+.|-+-..
T Consensus 819 Y~~~~~~----------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--- 880 (1189)
T KOG2041|consen 819 YSYCGDT----------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--- 880 (1189)
T ss_pred HHhccch----------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC---
Confidence 8765321 34567777777777766655544 34455566677777777777777776644321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 341 KPDTIGYTTLINCFCRAGRVDEALELLK 368 (521)
Q Consensus 341 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 368 (521)
|. ..+..|...+++.+|.++-+
T Consensus 881 -pk-----aAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 881 -PK-----AAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred -cH-----HHHHHHHHHHHHHHHHHHHH
Confidence 11 22344555555666555544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0055 Score=53.37 Aligned_cols=66 Identities=8% Similarity=0.078 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhccCCcCHHH---HHHHHHHHHccCcHHHHHHHHHhhccccCCCCCH
Q 009977 100 TILDKLARYKKFEAVDAVLRQMTYETCKFHEGI---FLNLMKHFSNCSLHERVLEMFHKIHPITREKPSL 166 (521)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 166 (521)
.....+...|++++|.+.|+.+.... |.+... ...++.+|.+.+++++|+..|++.....+..|+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 34444555667777777777666543 222222 2345566666677777777766665544444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.8e-05 Score=56.13 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=8.2
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 009977 208 LIKHHCKRGTLESAFEVLKE 227 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~ 227 (521)
++.+|.+.|++++|..++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0001 Score=65.74 Aligned_cols=288 Identities=14% Similarity=0.060 Sum_probs=139.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHh--hhc--cCC-cCHHHHHHHHH
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQK--GFNHNNATYATILDKLARYKKFEAVDAVLRQM--TYE--TCK-FHEGIFLNLMK 138 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~~-~~~~~~~~l~~ 138 (521)
..-+++.|+....+.+|+.+++.. +++.-...|..|..+|...+++++|.+.+..= +.+ |-. -....-..+.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 344778888888888888876432 11112345777777777788888887765321 111 100 01122234555
Q ss_pred HHHccCcHHHHHHHHHh-h---ccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-C-cHHHHHHHHHHH
Q 009977 139 HFSNCSLHERVLEMFHK-I---HPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLK-P-NTCIFNILIKHH 212 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~-~---~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~~l~~~~ 212 (521)
.+--.|.+++|+-.-.+ + .++........++-.+..+|...|+.- |.+ | +...++.=+.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~-------------g~~~pee~g~f~~ev~-- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCT-------------GLEAPEEKGAFNAEVT-- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccccc-------------CCCChhhcccccHHHH--
Confidence 55555666666553222 1 111111222333444444444433210 000 0 0000000000
Q ss_pred HhcCChHHHHHHHHHHH----hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CC-CCCCHHHHHHHHHHH
Q 009977 213 CKRGTLESAFEVLKEMK----KSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK---DQ-ILPDALTYNVLIDGF 284 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-~~~~~~~~~~l~~~~ 284 (521)
..++.|.++|.+=. +.|-...-...|..|...|.-.|+++.|+...+.-+.. .| -......+..+.+++
T Consensus 169 ---~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 169 ---SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 01222333333211 11100011223555555666667777777665433221 11 112234566777777
Q ss_pred HhCCCHHHHHHHHHHHHH----cCC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHH
Q 009977 285 CRGGKVDRAKKIMEFMKN----NGC-NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN----FL-LKPDTIGYTTLINCF 354 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~ 354 (521)
+-.|+++.|.+.|+.... .|- .........|.+.|.-..++++|+.++.+-.. .+ ..-...++-.|..+|
T Consensus 246 iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF 325 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 777777777777765432 221 12233455677777777777777777654321 00 112345566677777
Q ss_pred HhcCCHHHHHHHHHHHH
Q 009977 355 CRAGRVDEALELLKEMK 371 (521)
Q Consensus 355 ~~~~~~~~A~~~~~~~~ 371 (521)
...|..++|+.+.+.-+
T Consensus 326 ~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 326 NALGEHRKALYFAELHL 342 (639)
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 77777777776655443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00036 Score=57.27 Aligned_cols=82 Identities=10% Similarity=-0.027 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP-NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
...+..++..+...|++++|...|++.....+..+ ...+|..+...+...|++++|+..+++..... +....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 34556666666666777777777776655432211 23456666666777777777777777666542 2233444444
Q ss_pred HHHHH
Q 009977 281 IDGFC 285 (521)
Q Consensus 281 ~~~~~ 285 (521)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00025 Score=58.23 Aligned_cols=102 Identities=9% Similarity=-0.054 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHHHH
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP-DALTYNVLIDGFCRGGKVDRAKKI 296 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 296 (521)
+..+.+.+..+.+..........|..++..+...|++++|+..|++.....+.++ ...++..+...+...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444444432222113355667777788888888888888888876532222 234677788888888888888888
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHH
Q 009977 297 MEFMKNNGCNPNVFNYTTLMNGFC 320 (521)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~ 320 (521)
++...+.. +....++..+...+.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHH
Confidence 88887653 333444555555555
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.011 Score=51.41 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=25.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILPDALT---YNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
...+...|++++|++.|+++....+ -+... ...++.++.+.+++++|...+++.++.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP--~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYP--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334445555555555555544321 11111 123344445555555555555555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00086 Score=55.24 Aligned_cols=86 Identities=9% Similarity=-0.083 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009977 169 ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDG 247 (521)
Q Consensus 169 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (521)
+..+...+...|++++|...+++++....-.++ ...+..++..+.+.|++++|...+++.....+ .+...+..++..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHH
Confidence 444444555555555555555555432111111 24556666666666666666666666665544 345555555556
Q ss_pred HHhcCChHH
Q 009977 248 LCKNGRFRE 256 (521)
Q Consensus 248 ~~~~g~~~~ 256 (521)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 655555433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00042 Score=64.33 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=52.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
...+...|++++|+..|+++++. .+.+...|..+..+|.+.|++++|+..++++....+ .+...|..++.+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhC
Confidence 34445556666666666665532 223445555566666666666666666666655554 34555555666666666
Q ss_pred ChHHHHHHHHHHHhc
Q 009977 253 RFREAIELFEEMVSK 267 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~ 267 (521)
++++|+..|++.+..
T Consensus 85 ~~~eA~~~~~~al~l 99 (356)
T PLN03088 85 EYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00021 Score=66.29 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ-ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
+......++..+....+.+.+..++.+...... ...-..|..++++.|.+.|..+.++.+++.=...|+.||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444444455555555555555555555543211 1011223345666666666666666666655556666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFC 355 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 355 (521)
+..+.+.|++..|.++...|...+...+..++...+.+|.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 6666666666666666555554444444444444333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00044 Score=64.19 Aligned_cols=84 Identities=12% Similarity=-0.043 Sum_probs=35.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHH
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (521)
..|++++|+..|+++++.... +...|..+..+|...|++++|+..++++...... +...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 344444444444444443322 3334444444444444444444444444443221 33334444444444444444444
Q ss_pred HHHHHH
Q 009977 436 LLRLML 441 (521)
Q Consensus 436 ~~~~~~ 441 (521)
.|++++
T Consensus 92 ~~~~al 97 (356)
T PLN03088 92 ALEKGA 97 (356)
T ss_pred HHHHHH
Confidence 444444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.5e-05 Score=50.21 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
+...+...|++++|...|+++++.. +-+...+..+..++...|++++|...|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567788888888888888888764 3345778888888888888888888888888887765
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.8e-05 Score=44.33 Aligned_cols=33 Identities=42% Similarity=0.895 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN 308 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (521)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555554443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.9e-05 Score=44.25 Aligned_cols=33 Identities=36% Similarity=0.729 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH 448 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 448 (521)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00023 Score=61.14 Aligned_cols=102 Identities=19% Similarity=0.114 Sum_probs=85.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHH
Q 009977 352 NCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELE 431 (521)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (521)
.-+.+.+++.+|+..|.+.++..+. |.+-|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3467789999999999999998765 7888888999999999999999998888876443 4578999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 432 KAIELLRLMLCRGFLPHYATSNELLV 457 (521)
Q Consensus 432 ~a~~~~~~~~~~~~~p~~~~~~~l~~ 457 (521)
+|++.|++.+ .+.|+..+|-.=+.
T Consensus 167 ~A~~aykKaL--eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKAL--ELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhh--ccCCCcHHHHHHHH
Confidence 9999999998 57897777654443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0013 Score=63.76 Aligned_cols=143 Identities=13% Similarity=0.034 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--------CHHHHHHHHHHHH
Q 009977 340 LKPDTIGYTTLINCFCR--AG---RVDEALELLKEMKERGCKADIVTFNIILGGLCREG--------KIEEALGMLEKLW 406 (521)
Q Consensus 340 ~~~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~ 406 (521)
...+...|...+.+... .+ +.+.|..+|++..+..+. ....|..+..++.... +...+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34566777777766432 22 256777788887776433 3445554444333221 1223333333332
Q ss_pred HC-CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009977 407 YD-GIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESD 485 (521)
Q Consensus 407 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 485 (521)
.. ....++..|..+.-.....|++++|...+++++.. .|+...|..+...+...|+.++|...++++... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 22 12224455665555555567777777777777743 466677777777777777777777777777665 35544
Q ss_pred HH
Q 009977 486 SW 487 (521)
Q Consensus 486 ~~ 487 (521)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 54
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.3e-05 Score=43.67 Aligned_cols=32 Identities=25% Similarity=0.483 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCRGFLP 447 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 447 (521)
+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00033 Score=60.16 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=84.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 009977 317 NGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIE 396 (521)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 396 (521)
.-+.+.+++.+|+..|.++++... .|.+.|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 457789999999999999998532 35778888899999999999999999998887544 5679999999999999999
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHH
Q 009977 397 EALGMLEKLWYDGIYLNKASYRIVLN 422 (521)
Q Consensus 397 ~a~~~~~~~~~~~~~~~~~~~~~l~~ 422 (521)
+|.+.|++.++. .|+..+|-.=+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 999999999875 566666654443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00048 Score=61.60 Aligned_cols=132 Identities=17% Similarity=0.113 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-CcHh
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEM----KNFLLK-PDTIGYTTLINCFCRAGRVDEALELLKEMKE----RGCK-ADIV 380 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~ 380 (521)
.|..|.+.|.-.|+++.|+...+.- .+.|-. .....+..+..++.-.|+++.|.+.|+.... .|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666777888777665432 222211 1234566677777777888888777765432 2211 1233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYD-----GIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
...+|...|.-..+++.|+.++.+-+.. +..-....+.+|..+|...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455666777667777887777654321 1111345677777788888888888777665543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0011 Score=64.27 Aligned_cols=146 Identities=11% Similarity=0.028 Sum_probs=89.4
Q ss_pred CCcCHHHHHHHHHHHHc--c---CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhc--------CCHHHHHHHHHHh
Q 009977 126 CKFHEGIFLNLMKHFSN--C---SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIES--------NQVDLAQNFLKYS 192 (521)
Q Consensus 126 ~~~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~ 192 (521)
.+.+..+|...+++... . +..++|+++|++..+.. +....++..+..++... .+.+.+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 35555666665555322 2 23567777777765322 22223333332222211 1234455555443
Q ss_pred hhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 009977 193 NQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP 272 (521)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 272 (521)
......+.+..+|..+.-.+...|++++|...+++....+ |+...|..++..+...|+.++|.+.|++....++..|
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3322234456677777777777899999999999988876 4677888888999999999999999988887765555
Q ss_pred CHHH
Q 009977 273 DALT 276 (521)
Q Consensus 273 ~~~~ 276 (521)
+...
T Consensus 488 t~~~ 491 (517)
T PRK10153 488 TLYW 491 (517)
T ss_pred hHHH
Confidence 4333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00074 Score=60.35 Aligned_cols=143 Identities=12% Similarity=0.091 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCR-EGKIEEALGMLEKLWYDGIYLNKASYRIVLNF 423 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (521)
.+|..++....+.+..+.|..+|.++.+.+. .+...|...+..-.+ .++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4577777777777778888888888875432 244455555554333 45666688888887775 33366777777888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLPH---YATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVE 492 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 492 (521)
+...++.+.|..+|++.+.. +.++ ...|..++..-.+.|+.+.+..+.+++.+. .|+...+..+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 88888888888888888754 2222 247777777777888888888888777764 344444433433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.3e-05 Score=43.17 Aligned_cols=32 Identities=34% Similarity=0.652 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNP 307 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 307 (521)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.015 Score=49.22 Aligned_cols=132 Identities=11% Similarity=0.015 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCCHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ----ILPDALTYNV 279 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~ 279 (521)
+.+.++..+.-.|.+.-..+++.+..+..++ .++.....+++.-.+.|+.+.|...|++..+..+ ..-.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4455566666666666666666666665543 5555666666666666666666666665543211 1111112222
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 280 LIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
....|...+++..|...+.+....+ +.++...|.-.-+..-.|+..+|++.++.|.+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2223444455555555555555443 23333333333333334555556666555554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0015 Score=56.60 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC---CCHHHHHHH
Q 009977 360 VDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK---GELEKAIEL 436 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~ 436 (521)
.+....-++.-...++. |...|..|..+|...|+++.|..-|....+... +++..+..+..++... ....++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44444444444444443 677777777777777777777777777776532 2555666665554432 234567777
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 437 LRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 437 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
|++++. .+| |.....-|...+...|++.+|...|+.|++..
T Consensus 216 l~~al~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALA--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777774 345 56666666677777777777777777777653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00061 Score=60.90 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK-NGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|...+..-.. .++.+.|.++|+..++. ++.+...|...++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 344444444444445555555555543322 122233332222112 33344455555555443 2334444444445
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNV---FNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
.+.+.|+.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555554433 11111 2444444444444454444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0004 Score=64.50 Aligned_cols=123 Identities=13% Similarity=0.166 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 009977 270 ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN--GCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGY 347 (521)
Q Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 347 (521)
.+.+......+++.+....+.+.+..++.+.... ....-+.|..++++.|.+.|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4667778888888888888899999999988865 22334567789999999999999999999998999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 009977 348 TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCRE 392 (521)
Q Consensus 348 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (521)
+.++..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998877666777777777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=49.41 Aligned_cols=67 Identities=12% Similarity=0.000 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-cHHHHHHHHHHHHHcCc
Q 009977 448 HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGR-KLLFAFELLDELVIKES 515 (521)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~ 515 (521)
+..+|..+...+...|++++|+..|++.++.. +.+...|..+..++.+.| ++++|.+.+++.++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566677777777777888888877777653 223467777777777777 67788888877777654
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.046 Score=53.41 Aligned_cols=344 Identities=11% Similarity=0.074 Sum_probs=173.0
Q ss_pred hccCCcCHHHHH-----HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCH---HHHHHHHHHhhh
Q 009977 123 YETCKFHEGIFL-----NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQV---DLAQNFLKYSNQ 194 (521)
Q Consensus 123 ~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~ 194 (521)
..|++.+..-|. .++.-+...+.+..|+++-+.+. .+...+...+.....-+.+..+. +.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~--~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLN--LPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhC--CccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 345666655554 35556667788888888877664 12222256666666666665322 222233333311
Q ss_pred cCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 009977 195 HLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP---NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQIL 271 (521)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 271 (521)
... ....|..+++.....|+.+-|..+++.=...+...| +..-+..-+.-..+.|+.+-...++-.+..+-
T Consensus 503 --~~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~--- 576 (829)
T KOG2280|consen 503 --KLT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL--- 576 (829)
T ss_pred --cCC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---
Confidence 112 334677777777788888888887764222111000 00001112222233333333333333332210
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH-Hh-CCCCCCHHHHHH
Q 009977 272 PDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEM-KN-FLLKPDTIGYTT 349 (521)
Q Consensus 272 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~~~~ 349 (521)
+...+ ..-..+.-.|..+|.+..+.. +. ..+-..|-+..+...+-.+..+- .. ..+.+-......
T Consensus 577 -~~s~l------~~~l~~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~ 643 (829)
T KOG2280|consen 577 -NRSSL------FMTLRNQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT 643 (829)
T ss_pred -HHHHH------HHHHHhchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH
Confidence 00001 111122334555555544421 11 11222233322332222221111 00 001111222223
Q ss_pred HHHHHHhcCC----------HHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHH
Q 009977 350 LINCFCRAGR----------VDEALELLKEMKER-GCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYR 418 (521)
Q Consensus 350 l~~~~~~~~~----------~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 418 (521)
....+.+... ..+-+.+.+.+... |......+.+--+.-+...|+..+|.++-.+.. -||...|-
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w 719 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW 719 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence 3334443332 11222223333221 323344556666777888899999988776654 46888888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009977 419 IVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGR 498 (521)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (521)
.-+.+++..+++++-+++-+... . +.-|.-++.+|.+.|+.++|.+++-+.-.. . ..+.+|.+.|
T Consensus 720 Lk~~aLa~~~kweeLekfAkskk----s--PIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~ 784 (829)
T KOG2280|consen 720 LKLTALADIKKWEELEKFAKSKK----S--PIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVG 784 (829)
T ss_pred HHHHHHHhhhhHHHHHHHHhccC----C--CCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhc
Confidence 88899999999998777666543 1 333445788999999999999987543221 1 5667788888
Q ss_pred cHHHHHHH
Q 009977 499 KLLFAFEL 506 (521)
Q Consensus 499 ~~~~A~~~ 506 (521)
++.+|.++
T Consensus 785 ~~~eAad~ 792 (829)
T KOG2280|consen 785 DVKEAADL 792 (829)
T ss_pred cHHHHHHH
Confidence 88887664
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0018 Score=56.16 Aligned_cols=109 Identities=11% Similarity=0.105 Sum_probs=68.2
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Q 009977 225 LKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG---KVDRAKKIMEFMK 301 (521)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~ 301 (521)
++.-...+| .|...|-.|...|...|+++.|...|.+..+.. +++...+..+..++.... ...++..+|++++
T Consensus 145 Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 145 LETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 333344454 567777777777777777777777777776654 344444555555543322 3456667777777
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009977 302 NNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 338 (521)
... +.|+.+...|...+...|++.+|...|+.|.+.
T Consensus 221 ~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 221 ALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred hcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 665 445666666666777777777777777777664
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00016 Score=48.33 Aligned_cols=57 Identities=19% Similarity=0.305 Sum_probs=32.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
+..+.+.|++++|.+.|+++.+..+ .+...|..++.++...|++++|...|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555666666666666655554 35555555556666666666666666655543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00079 Score=59.01 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=40.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHccCc
Q 009977 426 QKGELEKAIELLRLMLCRGFLPH----YATSNELLVRLCKAGMAEDAAIALFGLVEMG-F-KPESDSWALLVELICRGRK 499 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~ 499 (521)
+.|++++|...|+.+++. .|+ ...+..+...|...|++++|...|+++.+.- - +.....+..++..+...|+
T Consensus 155 ~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred hcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 345555555555555532 221 1334444555555555555555555554321 0 0112333344444445555
Q ss_pred HHHHHHHHHHHHHcCcc
Q 009977 500 LLFAFELLDELVIKESG 516 (521)
Q Consensus 500 ~~~A~~~~~~m~~~~~~ 516 (521)
.++|.+.|+++++..|+
T Consensus 233 ~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 233 TAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHHHHCcC
Confidence 55555555555554444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0003 Score=47.66 Aligned_cols=62 Identities=26% Similarity=0.247 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG-RFREAIELFEEMVS 266 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 266 (521)
.+|..++..+...|++++|+..|++..+.++ .+...|..+..++...| ++++|++.+++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544 34555555555555555 45555555555544
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.019 Score=48.69 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=22.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009977 246 DGLCKNGRFREAIELFEEMVSKDQILP-DALTYNVLIDGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 246 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (521)
..+...|++.+|++.|+++....+..+ -......++.++.+.|+++.|...++.+++
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444443321111 122233344444444455555444444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.016 Score=49.16 Aligned_cols=65 Identities=8% Similarity=0.073 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhccC--CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCC
Q 009977 100 TILDKLARYKKFEAVDAVLRQMTYETC--KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKP 164 (521)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 164 (521)
.....+...|++.+|.+.|+.+..... +....+...++.++.+.|++++|...++++....+..|
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 344455567777777777777765421 22234555666677777777777777777654444333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0016 Score=47.21 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-ccCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 387 GGLCREGKIEEALGMLEKLWYDGI-YLNKASYRIVLNFSCQKG--------ELEKAIELLRLMLCRGFLPHYATSNELLV 457 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 457 (521)
..+...+++.....+|+.+.+.|+ -|+..+|+.++.+..+.. .+-+.+.+|+.|+..+++|+..+|+.++.
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~ 112 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLG 112 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 333344555555555555555555 455555555554433221 22344455555555555555555555555
Q ss_pred HHH
Q 009977 458 RLC 460 (521)
Q Consensus 458 ~~~ 460 (521)
.+.
T Consensus 113 ~Ll 115 (120)
T PF08579_consen 113 SLL 115 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00041 Score=46.79 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=26.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
+.|++++|+++|+++....+ .+...+..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555555555555555444 34444555555555555555555555555443
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.04 Score=46.73 Aligned_cols=132 Identities=14% Similarity=0.036 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-----HH
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYT-----TL 350 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----~l 350 (521)
..+.++..+...|.+.-....+.+.++...+.++.....|++.-.+.||.+.|...|++..+..-..+....+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455555555566666666666666665444555556666666666666666666666554432222222222 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 351 INCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 351 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
...|.-.+++..|...+.++...+.. |....|.-.-+..-.|+..+|.+.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23345566777777777776665433 4444444444444456777777777777765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.009 Score=45.09 Aligned_cols=90 Identities=18% Similarity=0.073 Sum_probs=47.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHhc
Q 009977 175 LLIESNQVDLAQNFLKYSNQHLRLKPN--TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSY-PNLITYSTLIDGLCKN 251 (521)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 251 (521)
++-..|+.++|+.+|++.+.. |.... ...+..+...+...|++++|..++++.....+.. -+......+..++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455555555555555442 33322 2355556666666666677666666665543310 0122222333455666
Q ss_pred CChHHHHHHHHHHH
Q 009977 252 GRFREAIELFEEMV 265 (521)
Q Consensus 252 g~~~~A~~~~~~~~ 265 (521)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666665544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=49.66 Aligned_cols=59 Identities=27% Similarity=0.360 Sum_probs=36.3
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWA 488 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 488 (521)
..|++++|++.|+++... .| +......++.+|.+.|++++|..+++++... .|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 456677777777776643 33 5666666777777777777777777766654 35543333
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.008 Score=45.36 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=6.0
Q ss_pred cCCHHHHHHHHHHHHH
Q 009977 357 AGRVDEALELLKEMKE 372 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~ 372 (521)
.|+.++|+.+|++..+
T Consensus 14 ~G~~~~Ai~~Y~~Al~ 29 (120)
T PF12688_consen 14 LGREEEAIPLYRRALA 29 (120)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3333333333333333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0021 Score=46.61 Aligned_cols=67 Identities=16% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 009977 323 GKLQEAKEVFDEMKNFLL-KPDTIGYTTLINCFCRAG--------RVDEALELLKEMKERGCKADIVTFNIILGGL 389 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (521)
+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+.+|+..+|+.++..+
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 444444444444444444 344444444444433221 1223344455555555555555555555444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00019 Score=39.42 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00018 Score=39.51 Aligned_cols=29 Identities=38% Similarity=0.863 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444455555555555555554444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00049 Score=47.19 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=26.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 458 RLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
.|.+.+++++|..++++++..+ +.+...+...+.++.+.|++++|.+.|++.++.+|+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3444445555555555444432 222344444444444555555555555555544443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00079 Score=46.14 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=37.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 210 KHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
..|.+.+++++|.++++.+...+| .+...|...+.++...|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456666677777777777666665 45666666666667777777777777766654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.038 Score=46.32 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=69.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHH
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD----QILPDALTYNVLIDGF 284 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~ 284 (521)
...|..+|..+.|-..+++.-+ ..++.++++|+++|++....- ....-...+......+
T Consensus 98 s~lY~E~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 4556666666666555554332 123344555555555543320 0011122334444455
Q ss_pred HhCCCHHHHHHHHHHHHHc----CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh
Q 009977 285 CRGGKVDRAKKIMEFMKNN----GCNPN-VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL---LKPDTIGYTTLINCFCR 356 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 356 (521)
.+...+++|-..+.+-... .--++ -..|...+-.|.-..++..|...++.-.+.+ -.-+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 5555665554444322110 00111 1234455556666778888888887644322 112356667777776 4
Q ss_pred cCCHHHHHHHH
Q 009977 357 AGRVDEALELL 367 (521)
Q Consensus 357 ~~~~~~A~~~~ 367 (521)
.|+.+++.+++
T Consensus 240 ~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 EGDIEEIKKVL 250 (308)
T ss_pred cCCHHHHHHHH
Confidence 57777665544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.12 Score=47.67 Aligned_cols=430 Identities=16% Similarity=0.174 Sum_probs=232.9
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHH--HHc
Q 009977 69 IKCEKEPQCALEIFNTVSEQKGFNHN----NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKH--FSN 142 (521)
Q Consensus 69 ~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 142 (521)
+.++++..+|.++|.++.+...-.|. ...-+.++++|. .++.+.....+....+.. + ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 45788999999999988544211111 223455666665 455666666666666553 2 3355555554 457
Q ss_pred cCcHHHHHHHHHhhcccc-CCCCC------------HhHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCCCcHHHHH
Q 009977 143 CSLHERVLEMFHKIHPIT-REKPS------------LKAISTCLNLLIESNQVDLAQNFLKYSNQHL---RLKPNTCIFN 206 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~-~~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 206 (521)
.+.+.+|++.+....... +..+. ...-+..+.++...|++.++..+++++.... ...-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 799999999887664321 11111 1112334688889999999999999887531 1224677888
Q ss_pred HHHHHHHhcC--------C-------hHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q 009977 207 ILIKHHCKRG--------T-------LESAFEVLKEMKKSQMS-----YPNLITYSTLIDGLCKN--GRFREAIELFEEM 264 (521)
Q Consensus 207 ~l~~~~~~~g--------~-------~~~A~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 264 (521)
.++-.+.+.= . ++.+.-...+|...... .|.......++....-. .+..--.++++.+
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 7665555421 1 12222222333221110 12222222222222211 1222233444444
Q ss_pred HhcCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009977 265 VSKDQILPDAL-TYNVLIDGFCRGGKVDRAKKIMEFMKNNGC----NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL 339 (521)
Q Consensus 265 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 339 (521)
.... +.|+.. ....+...+.+ +.+++..+-+.+....+ ..-..+|..++....+.++...|.+.+.-+...
T Consensus 252 e~~y-v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l- 327 (549)
T PF07079_consen 252 ENFY-VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL- 327 (549)
T ss_pred Hhhc-cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-
Confidence 3332 444432 22333343333 44555554444433211 112446777888888899999998888776652
Q ss_pred CCCCHHHH-------HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHh-HHHHH---HHHHHhcCC-HHHHHHHHH
Q 009977 340 LKPDTIGY-------TTLINCFCR----AGRVDEALELLKEMKERGCKADIV-TFNII---LGGLCREGK-IEEALGMLE 403 (521)
Q Consensus 340 ~~~~~~~~-------~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l---~~~~~~~g~-~~~a~~~~~ 403 (521)
.|+...- ..+.+..+. .-+...=+.+|+.+...++ |.. ....+ +.-+-+.|. -++|+.+++
T Consensus 328 -dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 328 -DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred -CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3433211 112222221 1123334445565555433 221 11122 223344554 778888888
Q ss_pred HHHHCCCccCHHHHHHHH----HHHHc---CCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HHhcCCHHHHHH
Q 009977 404 KLWYDGIYLNKASYRIVL----NFSCQ---KGELEKAIELLRLMLCRGFLP----HYATSNELLVR--LCKAGMAEDAAI 470 (521)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~ 470 (521)
.+.+-..- |...-|.+. .+|.. ...+.+-+.+-+-+.+.|+.| +...-|.|.++ +...|++.++.-
T Consensus 405 ~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 405 LILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88764211 333333222 23322 233444455545555668887 45555556554 457889988877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 471 ALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
.-.-+.+. .|++.+|..++-++....++++|.+++..+.-
T Consensus 484 ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 484 YSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 66655554 68899999999999999999999999987654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.11 Score=46.92 Aligned_cols=309 Identities=13% Similarity=0.129 Sum_probs=181.4
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH--HhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH--HccCcHHHH
Q 009977 74 EPQCALEIFNTVSEQKGFNHNNATYATILDKL--ARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF--SNCSLHERV 149 (521)
Q Consensus 74 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a 149 (521)
.+-.+..+|..-.+..| |..|-..+ +..|+-..|.++-.+..+. +..|...+..++.+- .-.|+++.|
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence 45667777776543333 33333333 3456777777776665432 244555566665543 345888888
Q ss_pred HHHHHhhccccCCCCCHhH--HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 150 LEMFHKIHPITREKPSLKA--ISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-TCIFNILIKHHCKRGTLESAFEVLK 226 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 226 (521)
.+-|+.|.. .|.... +..+.-..-+.|+.+.|..+-+..-. .-|. ...+...+...+..|+|+.|+++.+
T Consensus 140 r~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 140 RKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 888888853 233222 22222233357888888877776643 3333 5577888888888899999988888
Q ss_pred HHHhCCCCCCCHHHH--HHHHHHHH---hcCChHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 227 EMKKSQMSYPNLITY--STLIDGLC---KNGRFREAIELFEEMVSKDQILPDALT-YNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 227 ~~~~~~~~~~~~~~~--~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
.-.......+++.-- ..|+.+-. -.-+...|...-.+..+ ..||..- -..-..++.+.|+..++-.+++.+
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 766554433443221 22222211 12345666666555544 3455332 233456678888999999998888
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 009977 301 KNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN-FLLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKAD 378 (521)
Q Consensus 301 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 378 (521)
-+.. |.+..+ ++..+.+.|+.. ..-+++..+ ...+|+ ..+...+..+-...|++..|..--+..... .|.
T Consensus 290 WK~e--PHP~ia--~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pr 361 (531)
T COG3898 290 WKAE--PHPDIA--LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APR 361 (531)
T ss_pred HhcC--CChHHH--HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cch
Confidence 8763 444333 223344555433 333332221 012333 555566677777788888887766666554 456
Q ss_pred HhHHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 009977 379 IVTFNIILGGLCR-EGKIEEALGMLEKLWYD 408 (521)
Q Consensus 379 ~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 408 (521)
...|..|...-.. .|+-.++..++.+..+.
T Consensus 362 es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 362 ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 6677777666544 48888888888887765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.2 Score=49.24 Aligned_cols=90 Identities=6% Similarity=-0.043 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCc--hHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 63 GAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKF--EAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 63 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
..++..+...+.+..|+++-.++ ..+-.. +...|..-...+.+..+. +++.+.+++=.... ......|..+.+..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l-~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLL-NLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHh-CCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHH
Confidence 34556666666777777776665 221111 134444444444444221 12222222211111 12233555666666
Q ss_pred HccCcHHHHHHHHHh
Q 009977 141 SNCSLHERVLEMFHK 155 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~ 155 (521)
..+|+++-|..+++.
T Consensus 518 y~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 518 YQEGRFELARKLLEL 532 (829)
T ss_pred HhcCcHHHHHHHHhc
Confidence 667777777766553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.1 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=13.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 009977 388 GLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~~ 408 (521)
+|.+.|+..+|.++++++...
T Consensus 826 AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhhh
Confidence 455666777777777766543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.013 Score=48.38 Aligned_cols=87 Identities=24% Similarity=0.257 Sum_probs=58.8
Q ss_pred CcHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC----------------CCHHHHHH
Q 009977 377 ADIVTFNIILGGLCRE-----GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK----------------GELEKAIE 435 (521)
Q Consensus 377 ~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a~~ 435 (521)
.+..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3778888888888753 66776777778888888888888888888876431 12344555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009977 436 LLRLMLCRGFLPHYATSNELLVRLCKAG 463 (521)
Q Consensus 436 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g 463 (521)
++++|...|+-||.+++..+++.+.+.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 6666666666666666666665555444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.01 Score=50.90 Aligned_cols=101 Identities=20% Similarity=0.118 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHH
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCRGFL--PHYATSNELLVRLCKAGMAEDAAIALFGLVEM-GFKPE-SDSWALLV 491 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~ 491 (521)
.|+..+..+ ..|++..|...|...++..-. -....+..|..++...|++++|...|..+.+. +-.|. ++.+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566666644 677788888888888865211 13444556888888899998888888888753 22222 36777888
Q ss_pred HHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 492 ELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 492 ~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
....+.|+.++|...|+++.++.|++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 88888999999999999988887764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.09 Score=45.74 Aligned_cols=145 Identities=13% Similarity=0.092 Sum_probs=81.0
Q ss_pred HHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCH
Q 009977 103 DKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQV 182 (521)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 182 (521)
......|++.+|..+|....... +-+......++.+|...|+.+.|..++..++... ..........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34556777777777777777664 3345566677777777888888888777775311 111111122234444444444
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 183 DLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
.+...+-+.+-. .+.|...-..+...+...|+.+.|++.+-.+.+.+....|...-..++..+...|
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444443321 2235666666666777777777776666555554433344455555555554444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.021 Score=50.21 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--ccCHHHHHHHHH
Q 009977 347 YTTLINCFCRAGRVDEALELLKEMKERGCKAD--IVTFNIILGGLCREGKIEEALGMLEKLWYDGI--YLNKASYRIVLN 422 (521)
Q Consensus 347 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 422 (521)
|...+..+.+.|++++|+..|+.+.+..+... ..++..+...|...|++++|...|+.+...-+ ......+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555555555555554422110 12444445555555555555555555543311 111223333333
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 009977 423 FSCQKGELEKAIELLRLML 441 (521)
Q Consensus 423 ~~~~~g~~~~a~~~~~~~~ 441 (521)
.+...|+.++|..+|+.++
T Consensus 226 ~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.19 Score=46.28 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=51.8
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccC
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETC 126 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (521)
++.+|-.++.-+..++..++-.++++++. ..++.-..+|..-++.-...++++..+.+|.+.+....
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~--~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLS--SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhc--CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 56788888888888888888888888874 34555566777777777777888888888888876643
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.013 Score=48.43 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC
Q 009977 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE 429 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (521)
+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456788999999999999999999999999866654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.02 Score=45.57 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLV-----EMGFKPESDSWA 488 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~ 488 (521)
....++..+...|++++|..+.+.++. ..| +...+..++.+|...|+..+|.++|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 445566677788889999998888884 456 77788888889999999888888888764 368888776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.055 Score=42.81 Aligned_cols=90 Identities=16% Similarity=0.021 Sum_probs=60.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (521)
..-+...|++++|..+|+-+...++. +..-|..|..++-..+++++|+..|..+...+. -|+..+.....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 34455677888888888777765543 555666777777777788888887776654321 2334444567777778888
Q ss_pred HHHHHHHHHHHH
Q 009977 466 EDAAIALFGLVE 477 (521)
Q Consensus 466 ~~a~~~~~~~~~ 477 (521)
+.|...|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888887777766
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.16 Score=46.58 Aligned_cols=167 Identities=15% Similarity=0.067 Sum_probs=97.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 009977 310 FNYTTLMNGFCKEGKLQEAKEVFDEMKNFL---LKPDTIGYTTLINCFCR---AGRVDEALELLKEMKERGCKADIVTFN 383 (521)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (521)
.+...++-.|....+++.-+++.+.+.... +......-....-++.+ .|+.++|+.++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344456667888889999999998887631 11112222334445566 788999999988866666667888888
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC----HHHHHHHH---HHHH-HCCCC
Q 009977 384 IILGGLCR---------EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE----LEKAIELL---RLML-CRGFL 446 (521)
Q Consensus 384 ~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~---~~~~-~~~~~ 446 (521)
.++..|-. ....++|+..|.+.-+.. |+..+=-.++..+...|. -.+..++- ..+. ++|..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88877642 123566777776665542 333221112222222232 12233333 1211 22322
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 447 ---PHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 447 ---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.+.-.+..++.++.-.|+.++|.+..++|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 24455566777777788888888888887765
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.031 Score=44.21 Aligned_cols=90 Identities=13% Similarity=0.026 Sum_probs=41.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
..-+...|++++|..+|+-+...++ -+..-|..|..++...+++++|+..|......+ .-|+..+-....++...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhC
Confidence 3334445555555555555544443 344444445555555555555555554443321 122222333444445555
Q ss_pred CHHHHHHHHHHHHH
Q 009977 289 KVDRAKKIMEFMKN 302 (521)
Q Consensus 289 ~~~~a~~~~~~~~~ 302 (521)
+.+.|...|....+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 55555555544443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.21 Score=45.33 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=33.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKI 395 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (521)
+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-..+... . + .+.-|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k--K-sPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K--K-SPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C--C-CCCChHHHHHHHHHCCCH
Confidence 333444444444444433332 24444444445555555555444333211 0 0 223444444444444444
Q ss_pred HHHHHHHHH
Q 009977 396 EEALGMLEK 404 (521)
Q Consensus 396 ~~a~~~~~~ 404 (521)
.+|..++.+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0025 Score=44.33 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKS----QMSYPN-LITYSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
+++.+...|...|++++|++.|++..+. |...++ ..++..++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666666666666666666655421 111111 3445556666666666666666666554
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.36 Score=46.36 Aligned_cols=410 Identities=10% Similarity=0.031 Sum_probs=211.8
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNN-ATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLN 135 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (521)
-++..|+.++.--....+.+.+...++.++.. .|.. --|......=.+.|..+.+.++|++.+. +++.+...|..
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~ 118 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLS 118 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHH
Confidence 35667887777666666667777777777633 2333 3466666666778888999999998886 46777777777
Q ss_pred HHHHHH-ccCcHHHHHHHHHhhccccCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 136 LMKHFS-NCSLHERVLEMFHKIHPITRE-KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 136 l~~~~~-~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
....+. ..|+.+...+.|++.....+. --+...|...|.--..++++.....+++++++. | ..-++..-.-|.
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P-~~~~~~~f~~f~ 193 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----P-LHQLNRHFDRFK 193 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----h-hhHhHHHHHHHH
Confidence 666554 458888888888887644333 333445666666666777788888888777642 1 112222211111
Q ss_pred ---hc------CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcCCCCCC-HHHHHHHH-
Q 009977 214 ---KR------GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFRE-AIELFEEMVSKDQILPD-ALTYNVLI- 281 (521)
Q Consensus 214 ---~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~-~~~~~~l~- 281 (521)
+. ...+++.++-...... ......++..+ .....+..... .+. ....+.+.
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~--------------~~~~~~~~~~e~~~~~v~~~~~~---s~~l~~~~~~l~~ 256 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAER--------------SKITHSQEPLEELEIGVKDSTDP---SKSLTEEKTILKR 256 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhh--------------hhcccccChhHHHHHHHhhccCc---cchhhHHHHHHHH
Confidence 11 1112222211111110 00000011111 11111111000 000 00111111
Q ss_pred ------HHHHhCCCHHHHHHHHHHHHHcC---CC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009977 282 ------DGFCRGGKVDRAKKIMEFMKNNG---CN----PNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYT 348 (521)
Q Consensus 282 ------~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 348 (521)
.++...-........++.-++.- +. ++..+|..-+..-.+.|+.+.+.-+|++..-- +..-...|-
T Consensus 257 ~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWi 335 (577)
T KOG1258|consen 257 IVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWI 335 (577)
T ss_pred HHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHH
Confidence 11112222223333333333221 11 23456666677777888888888888776531 222244555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHH-HHHHHHHHHHcC
Q 009977 349 TLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKA-SYRIVLNFSCQK 427 (521)
Q Consensus 349 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 427 (521)
..+......|+.+-|..++....+-..+-.+.+-..-....-..|+++.|..+++.+...- |+.. .-..-+....+.
T Consensus 336 ky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 336 KYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHh
Confidence 5555555568888887777666554333222222111222334578888888888887752 3322 122223344566
Q ss_pred CCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009977 428 GELEKAI---ELLRLMLCRGFLPHYATSNELLVRL-----CKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGR 498 (521)
Q Consensus 428 g~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (521)
|..+.+. .++...... .-+..+...+.--+ .-.++.+.|..++.++.+.- +++...|..++......+
T Consensus 414 ~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 414 GNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred cchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 7777776 333333221 22333333333322 23567888888888877652 445566777777666554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.041 Score=43.83 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC-----RGFLPHYATS 452 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~ 452 (521)
+...++..+...|++++|..+.+.+....+- +...|..++.+|...|+..+|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4556677778889999999999988887544 778889999999999999999998887753 3888877653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.037 Score=52.69 Aligned_cols=131 Identities=17% Similarity=0.241 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDG 247 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (521)
....++.-+.+.|..+.|+.+.+. +. .-.....+.|+++.|.++.++. .+...|..|...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D----------~~---~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD----------PD---HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-----------HH---HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC----------hH---HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHH
Confidence 345555555556666666554432 11 1133445666666666554321 455567777777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHH
Q 009977 248 LCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQE 327 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 327 (521)
....|+++-|++.|++... +..|+-.|.-.|+.++-.++.+.....| -++....++.-.|+.++
T Consensus 357 AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEE 420 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHH
Confidence 7777777777666665421 3445555666666666666666655554 23444444555566666
Q ss_pred HHHHHHH
Q 009977 328 AKEVFDE 334 (521)
Q Consensus 328 A~~~~~~ 334 (521)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.19 Score=43.79 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=73.0
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
.......|++.+|..+|...... ..-+......++.+|...|+.+.|..++..+..... .........-+..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHh
Confidence 33455667777777777666532 233345556666677777777777777765532110 001111112233344444
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 217 TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
...+..++-.+.-. ++ .|...-..+...+...|+.++|++.+-.+++++.-.-|...-..++..+.-.|
T Consensus 218 ~~~~~~~l~~~~aa-dP--dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAA-DP--DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHh-CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44333333333322 22 25555555666666666666666666655554333333444445555444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0038 Score=43.38 Aligned_cols=63 Identities=17% Similarity=0.105 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 450 ATSNELLVRLCKAGMAEDAAIALFGLVE----MGF-KPE-SDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
.+++.+...|...|++++|+..|++.++ .|- .|+ ..++..+..++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455566666666666666666666553 110 011 24555666677777777777777776654
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.46 Score=47.51 Aligned_cols=179 Identities=11% Similarity=0.086 Sum_probs=98.1
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNN--ATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
+-..-+..+.+..-+.-|+.+-+.- +..++. .......+.+.+.|++++|...|-+-+.. +.| ..++.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4556777888888888888886553 222332 33555566777888888888777665422 112 13455
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
-|.......+-...++.+.+ ..-.+......++.+|.+.++.+...++.+... . |.. ..-....+..+.+.+-.
T Consensus 406 kfLdaq~IknLt~YLe~L~~--~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHK--KGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHH--cccccchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChH
Confidence 55555555555556666653 223444455667777777777777776665432 1 100 01133445555556666
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 264 (521)
++|.-+-.+... +..... -.+-..+++++|++++..+
T Consensus 480 ~~a~~LA~k~~~------he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK------HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc------CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 666555443321 111111 1233455666666666544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.022 Score=43.52 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 009977 235 YPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 235 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (521)
.|+..+..+++.+|+.+|++..|+++.+...+..+++.+..+|..|+.-..
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 466677777777777777777777777777666666666666666665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.078 Score=47.25 Aligned_cols=228 Identities=12% Similarity=0.021 Sum_probs=112.0
Q ss_pred HHhcCChHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC---cchHHHHHHHHHh
Q 009977 248 LCKNGRFREAIELFEEMVSKDQ-ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN--GCNPN---VFNYTTLMNGFCK 321 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 321 (521)
+....+.++|+..+.+.+.+-. ...-..++..+..+.++.|.+++++..--.-++. ..... ...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776654311 1111334556666666777766665443221111 00111 1234444444444
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCcHhHHHHHHHHHHhc
Q 009977 322 EGKLQEAKEVFDEMKNF-LLKPD---TIGYTTLINCFCRAGRVDEALELLKEMKERGC-----KADIVTFNIILGGLCRE 392 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 392 (521)
.-++.+++.+-..-... |..|. ......+..++...+.++++++.|+...+... ......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44555555444332221 11111 12223344555566667777777766654311 11234566666667777
Q ss_pred CCHHHHHHHHHHHHHC----CCccCHH-HHH-----HHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 009977 393 GKIEEALGMLEKLWYD----GIYLNKA-SYR-----IVLNFSCQKGELEKAIELLRLMLCR----GFLP-HYATSNELLV 457 (521)
Q Consensus 393 g~~~~a~~~~~~~~~~----~~~~~~~-~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~ 457 (521)
.++++|.-+..+..+. ++. |.. -|. .+.-++...|+...|.+..++..+. |-.+ .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7777776666554432 222 111 121 2223455566666666666555432 3222 3334455666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 009977 458 RLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~ 476 (521)
.|...|+.+.|..-|+++.
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 6666777776666666554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.35 Score=43.35 Aligned_cols=203 Identities=14% Similarity=0.100 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVL----KEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD---ALT 276 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 276 (521)
++..+..+.++.|.+++++..- +-..+..-...-...|..+.+++-+..++.+++.+-+.-....|..|- -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4555556666666666654321 111111100012344556666666666677777666555544333221 123
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHH
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGC-----NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN----FLLKPDTIGY 347 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~ 347 (521)
..++..+....+.++++++.|+...+--. .....++..|...|.+..|+++|.-+..+..+ .++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34566677777788888888887765211 12345778888889999999988877665533 2222111222
Q ss_pred H-----HHHHHHHhcCCHHHHHHHHHHHHH----cCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 348 T-----TLINCFCRAGRVDEALELLKEMKE----RGCKA-DIVTFNIILGGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 348 ~-----~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 406 (521)
. .|.-++...|....|.+.-++..+ .|-.+ .......+...|-..|+.+.|+.-++...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 233456667777777777666543 33221 12334556677778888888887777654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.052 Score=50.51 Aligned_cols=67 Identities=7% Similarity=-0.041 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL-ITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
+...++.+..+|.+.|++++|+..|++..+.++..+.. .+|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666555421111 34666666666666666666666666553
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.39 Score=43.67 Aligned_cols=107 Identities=17% Similarity=0.209 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFC 355 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 355 (521)
+.+..+.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... +..+..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34555666677787777777766553 46777777788888888888876664332 224567777888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 009977 356 RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGML 402 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 402 (521)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 888888887777651 1244566777888887776553
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.058 Score=41.20 Aligned_cols=102 Identities=7% Similarity=0.104 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHH
Q 009977 94 NNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCL 173 (521)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 173 (521)
|..++..++.++++.|+.+....+++..- |+.++... ..+. .....+..|+..++.+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence 34566677777777777777777766554 22222100 0000 222245577777888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
.+|+..+++..|.++++...+.++++-+..+|..|+.-....-
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 8888888888888888887777777777777777776655433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.066 Score=41.35 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=32.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC--ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDGI--YLNKASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
.....+.|++++|.+.|+.+...-+ .-....-..++.+|.+.+++++|...+++.++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444555666666666666665411 11334445556666666666666666666664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.53 Score=43.34 Aligned_cols=177 Identities=18% Similarity=0.072 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCcchHH
Q 009977 239 ITYSTLIDGLCKNGRFREAIELFEEMVSKDQ--ILPDALTYNVLIDGFCR---GGKVDRAKKIMEFMKNNGCNPNVFNYT 313 (521)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 313 (521)
.+...++-+|-...+++..+++++.+..... +.-....-...+-++.+ .|+.++|++++..+......+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 3344555567777777777777777754311 11111222233344455 667777777777655444456666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 009977 314 TLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREG 393 (521)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (521)
.++..|-.. |.+ .+.. |. ...++|+..|.+.-+.. |+..+--.++..+...|
T Consensus 222 L~GRIyKD~---------~~~---s~~~-d~-------------~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 222 LLGRIYKDL---------FLE---SNFT-DR-------------ESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHH---------HHH---cCcc-ch-------------HHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcC
Confidence 666655321 100 0000 11 11445555555444331 22221111111122222
Q ss_pred C----HHHHHHHH---H-HHHHCC---CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 394 K----IEEALGML---E-KLWYDG---IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 394 ~----~~~a~~~~---~-~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
. -.+..++- . .+.+.| ...+...+..++.++.-.|+.++|.+..++|.+.
T Consensus 274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 11111211 1 111122 2345666778888888899999999999999854
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.14 Score=49.56 Aligned_cols=164 Identities=21% Similarity=0.174 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCC
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL------ITYSTLIDGLCK----NGRFREAIELFEEMVSKDQILPD 273 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 273 (521)
....++....-.|+-+.+++.+.+..+.+.. ..+ ..|..++..++. ..+.+.|.++++.+..+ .|+
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i-~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~ 265 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENI-RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPN 265 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCC
Confidence 4455667777778888888888877664332 222 223444433333 45678888899888876 345
Q ss_pred HHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 009977 274 ALTYN-VLIDGFCRGGKVDRAKKIMEFMKNNG---CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT 349 (521)
Q Consensus 274 ~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 349 (521)
...|. .-.+.+...|++++|++.|+...... .+.....+..++-.+.-.+++++|.+.|..+.+..- -+...|.-
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y 344 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAY 344 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 44443 33455667889999999998765321 122334556677788888999999999998887421 12344444
Q ss_pred HHH-HHHhcCCH-------HHHHHHHHHHHH
Q 009977 350 LIN-CFCRAGRV-------DEALELLKEMKE 372 (521)
Q Consensus 350 l~~-~~~~~~~~-------~~A~~~~~~~~~ 372 (521)
+.. ++...++. ++|.++|.+...
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 333 34556776 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.29 Score=47.26 Aligned_cols=54 Identities=19% Similarity=0.003 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
..+...+..-+.+...+.-|-++|.+|-+ ...++......++|++|..+-+...
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 33444444444445555556666655522 1334455556666666666655443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.54 Score=42.17 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=29.0
Q ss_pred HhcCChHHHHHHHHHhhhCC-CCCCCHH------HHHHHHHHHHhcC-CchHHHHHHHHhh
Q 009977 70 KCEKEPQCALEIFNTVSEQK-GFNHNNA------TYATILDKLARYK-KFEAVDAVLRQMT 122 (521)
Q Consensus 70 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~ 122 (521)
.++|+.+.|..++.++.... ...|+.. .|+.-. .....+ +++.|...+++..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~ 63 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAY 63 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHH
Confidence 36788999999998874332 2233321 232222 233344 6777766665554
|
It is also involved in sporulation []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.099 Score=47.56 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
+++.+.-+|.+.+++..|+...++.+..++ +|+...-.-..++...|+++.|+..|+++++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~--~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP--NNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344444445555555555555555544443 3444444444455555555555555555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.3 Score=40.36 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=27.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
|-..|-++-|.--|.+..... |.-+.+||.|.-.+...|+++.|.+.|+...+
T Consensus 75 YDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 334444555555555554432 22344555555555566666666666665555
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.028 Score=48.31 Aligned_cols=94 Identities=11% Similarity=-0.021 Sum_probs=55.0
Q ss_pred HHccCcHHHHHHHHHhhccccCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHHhcCC
Q 009977 140 FSNCSLHERVLEMFHKIHPITRE-KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-TCIFNILIKHHCKRGT 217 (521)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 217 (521)
+.+.|++..|...|.......+. .-...++.-|..++...|+++.|...|..+.+.+.-.|. +..+..|.....+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 44456666666666655432222 222334445566666666666666666666554443333 3566666777777777
Q ss_pred hHHHHHHHHHHHhCCC
Q 009977 218 LESAFEVLKEMKKSQM 233 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~ 233 (521)
.++|..+|+++.+.-|
T Consensus 231 ~d~A~atl~qv~k~YP 246 (262)
T COG1729 231 TDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 7777777777776654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.43 Score=40.31 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=24.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009977 243 TLIDGLCKNGRFREAIELFEEMVSKDQ--ILPDALTYNVLIDGFCRGGKVDRAKKI 296 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (521)
..|-.+.-..++..|.+.++.-.+.++ -+.+..+...|+.+| ..|+.+++.++
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 334444445566666666655332221 122344455555544 34455544443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.058 Score=48.97 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=43.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCC-------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH
Q 009977 210 KHHCKRGTLESAFEVLKEMKKSQMS-------------YPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALT 276 (521)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 276 (521)
+.|.+.|++..|...|++....-.. ..-..+++.+..++.+.+++.+|++..++.+..+ ++|...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhH
Confidence 4555666666666665554331100 0112234444445555555555555555554432 344444
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
+..-..++...|+++.|+..|.++++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 444444555555555555555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.4 Score=42.47 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=49.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhCCCH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA----LTYNVLIDGFCRGGKV 290 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 290 (521)
.|+..+|-..++++.+..| .|..++.-.=.+|.-.|+...-...++++... ..+|. ..-....-++...|-+
T Consensus 116 ~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4444444444555444443 34444444444444455544444444444432 11221 1112222223344555
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFD 333 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 333 (521)
++|++.-++..+.+ +.|...-.++...+-..|++.++.+...
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 55555555544443 3333344444444444555555544443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.22 Score=38.56 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=40.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKP-NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN 237 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 237 (521)
....+.|++++|.+.|+.+..+.-..+ ...+...|+.+|.+.|++++|...+++..+..|..|+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 334455666666666666654332222 2345666777777777777777777777777766554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.52 Score=40.40 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=28.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 247 GLCKNGRFREAIELFEEMVSKDQILP-DALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.-.+.|++++|.+.|+.+..+.+..| ...+...++-++.+.++++.|+..+++..+.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33455555566655555554432111 2233444445555555666665555555543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.072 Score=39.86 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=60.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcC
Q 009977 387 GGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYA---TSNELLVRLCKAG 463 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g 463 (521)
-+++..|+.+.|++.|.+.+..-++ ....||.-..++.-.|+.++|++-++++++..-.-... .|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3566778888888888877765333 66678888888877888888888887777542111221 2222334566677
Q ss_pred CHHHHHHHHHHHHHCC
Q 009977 464 MAEDAAIALFGLVEMG 479 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~ 479 (521)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7778888777777766
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.076 Score=49.45 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA-LTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.+...|+.+..+|...|++++|+..|++.++.++..+.. .+|..+..+|...|+.++|++.++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567889999999999999999999999998864221111 46999999999999999999999999985
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.72 Score=41.38 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCHH---HHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009977 276 TYNVLIDGFCRGGKVD---RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 338 (521)
++..++.+|...+..+ +|..+++.+.... +..+.++..-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4566666676666543 4455555554332 333445555566666677777777777777764
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.53 Score=44.32 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 009977 418 RIVLNFSCQKGELEKAIELLRLMLCRG-FLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELIC 495 (521)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 495 (521)
..+..++.+.|+.++|++.++++.+.. ...+..+...|+.++...+.+.++..++.+.-+...+... -+|...+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345566667777777777777777431 1124445666777777777777777777665433222222 23333221112
Q ss_pred ccCc---------------HHHHHHHHHHHHHcCcc
Q 009977 496 RGRK---------------LLFAFELLDELVIKESG 516 (521)
Q Consensus 496 ~~g~---------------~~~A~~~~~~m~~~~~~ 516 (521)
..|+ ...|.+.++++++.+|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 1222 23477888999888875
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.34 Score=46.29 Aligned_cols=157 Identities=11% Similarity=0.050 Sum_probs=82.7
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHH
Q 009977 70 KCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERV 149 (521)
Q Consensus 70 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 149 (521)
.-+++++++.+....-.-.+.++ ..-.+.++..+.+.|..+.|.++...- . .-.....+.|+.+.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHHHH
Confidence 34567777666654211111122 344666777777777777776653332 1 223445667777777
Q ss_pred HHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 150 LEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMK 229 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 229 (521)
.++.++. .+...|..+.+.....|+++.|+..|.+.. -+..|+-.|.-.|+.+.-.++.+...
T Consensus 338 ~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 338 LEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHHH
Confidence 7765443 245577777777777777777777776552 34555666666777666666666555
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 230 KSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264 (521)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 264 (521)
..|- ++....++.-.|+.++..+++.+.
T Consensus 401 ~~~~-------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD-------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT--------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5442 344444455556666666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.24 Score=48.02 Aligned_cols=61 Identities=26% Similarity=0.186 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHhcCCh-------HHHHHHHHHHHh
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTL-IDGLCKNGRF-------REAIELFEEMVS 266 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~~~ 266 (521)
.+--++-.+.-.++|++|.+.|..+.+... -+...|.-+ +.++...|+. ++|.++|.++..
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s~--WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKESK--WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 344445556666677777777777666543 233333322 2334445555 677777766643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.43 Score=44.74 Aligned_cols=146 Identities=16% Similarity=0.096 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 009977 324 KLQEAKEVFDEMKN-FLLKPD-TIGYTTLINCFCRA---------GRVDEALELLKEMKERGCKADIVTFNIILGGLCRE 392 (521)
Q Consensus 324 ~~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (521)
..+.|..+|.+... ....|+ ...|..+..++... .+..+|.++-+...+.+.. |..+...+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 35678888888772 224555 44555544443321 2344666777777777654 777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 009977 393 GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH---YATSNELLVRLCKAGMAEDAA 469 (521)
Q Consensus 393 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~ 469 (521)
++++.|...|++....++. ...+|......+.-.|+.++|.+.+++.++ +.|. ..+....++.|+.. ..++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 8888888888888776433 345555555566677888888888888763 4562 22333334455544 456777
Q ss_pred HHHHH
Q 009977 470 IALFG 474 (521)
Q Consensus 470 ~~~~~ 474 (521)
++|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.61 Score=39.99 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhccC--CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCH
Q 009977 97 TYATILDKLARYKKFEAVDAVLRQMTYETC--KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSL 166 (521)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 166 (521)
.|+.-+ .-.+.|++++|.+.|+.+..+.+ +-...+...++.++.+.+++++|+..+++.....+.+|+.
T Consensus 37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 344333 34467888888888888876531 2234456667777778888888888888776666666664
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.26 E-value=1.2 Score=43.00 Aligned_cols=369 Identities=12% Similarity=0.035 Sum_probs=204.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH-hcCCchHHHHHHHHhhhc-cCC-cCHHHHHHHHHHHHc
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLA-RYKKFEAVDAVLRQMTYE-TCK-FHEGIFLNLMKHFSN 142 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~ 142 (521)
...=.+-|..+.+.++|++.+ .+++.+...|...+..+. ..|+.+....+|+..... |.. .+...|...|..-..
T Consensus 86 A~~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~ 163 (577)
T KOG1258|consen 86 ADYEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG 163 (577)
T ss_pred HHHHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc
Confidence 333446688999999999975 367777777777766544 457778888888888765 222 234567778888788
Q ss_pred cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHH---hc------CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLI---ES------NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
++++.....+|+++.+ .|. ..++.....|. .. ...+++.++-.....+ ..-.
T Consensus 164 qks~k~v~~iyeRile----iP~-~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~--------------~~~~ 224 (577)
T KOG1258|consen 164 QKSWKRVANIYERILE----IPL-HQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER--------------SKIT 224 (577)
T ss_pred cccHHHHHHHHHHHHh----hhh-hHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh--------------hhcc
Confidence 8999999999999874 221 12222222111 11 1223333222221110 0000
Q ss_pred hcCCh-HHHHHHHHHHHhCCCCCCCHHHHHHHH-------HHHHhcCChHHHHHHHHHHHhcC------CCCCCHHHHHH
Q 009977 214 KRGTL-ESAFEVLKEMKKSQMSYPNLITYSTLI-------DGLCKNGRFREAIELFEEMVSKD------QILPDALTYNV 279 (521)
Q Consensus 214 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~ 279 (521)
..|.. +.-....+..-..+.. -....+.+. ..+...-...+..-.|+.-+... -.+++..+|..
T Consensus 225 ~~~~~~e~~~~~v~~~~~~s~~--l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~ 302 (577)
T KOG1258|consen 225 HSQEPLEELEIGVKDSTDPSKS--LTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRY 302 (577)
T ss_pred cccChhHHHHHHHhhccCccch--hhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHH
Confidence 01111 1111111111110000 000011111 11222223333334444443321 12334567888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcC
Q 009977 280 LIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINC-FCRAG 358 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 358 (521)
-+..-...|+++.+.-+|++..-- +..-...|-..+.-....|+.+-|..++....+-..+..+. ...+-.. .-..|
T Consensus 303 yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~-i~L~~a~f~e~~~ 380 (577)
T KOG1258|consen 303 YLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI-IHLLEARFEESNG 380 (577)
T ss_pred HhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH-HHHHHHHHHHhhc
Confidence 888888999999999999988742 12233455555566666699999998888776643332222 2222222 33478
Q ss_pred CHHHHHHHHHHHHHcCCCCcHh-HHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCccCHHHHHHHHH-----HHHcCCC
Q 009977 359 RVDEALELLKEMKERGCKADIV-TFNIILGGLCREGKIEEALG---MLEKLWYDGIYLNKASYRIVLN-----FSCQKGE 429 (521)
Q Consensus 359 ~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~ 429 (521)
+++.|..+++.+.+.- |+.. .-..-+....+.|..+.+.. ++..... |-. +......+.- .+.-.++
T Consensus 381 n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~-~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 381 NFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE-NNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred cHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc-CcchhHHHHHHHHHHHHHHhcC
Confidence 9999999999998774 4432 22333555667788887773 3333222 222 3333333322 2334689
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009977 430 LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGM 464 (521)
Q Consensus 430 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 464 (521)
.+.|..++.++.+. ..++...|..+++.+...+.
T Consensus 457 ~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 457 ADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 99999999999864 45577778888887766553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.22 E-value=1 Score=41.77 Aligned_cols=418 Identities=13% Similarity=0.120 Sum_probs=234.9
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhcc
Q 009977 79 LEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHP 158 (521)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 158 (521)
+++=+++ +.+ |.|..+|-.|++.+...+..++..+++++|... +|.-+.+|...+.+-....++..+..+|.+...
T Consensus 29 lrLRerI-kdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 29 LRLRERI-KDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHh-hcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 4566666 443 678889999999999999999999999999864 466677888878777777899999999999863
Q ss_pred ccCCCCCHhHHHHHHHHHHhcC-----CH-HHHHHHHHHhhhcCCCCCcH-HHHHHHHHHHH---hcCC------hHHHH
Q 009977 159 ITREKPSLKAISTCLNLLIESN-----QV-DLAQNFLKYSNQHLRLKPNT-CIFNILIKHHC---KRGT------LESAF 222 (521)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~~-----~~-~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~---~~g~------~~~A~ 222 (521)
..-+...|...+.-..+.+ +- -...+.|+..+...++.|-. ..|+..+..+- ..|. +|...
T Consensus 105 ---k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 105 ---KSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred ---hhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 2444555655554333322 21 12234455554444566643 35555554432 2344 45566
Q ss_pred HHHHHHHhCCCCCCCH-HHHHHH------HHHH-Hh--cC----ChHHHHHHHHHHHhcC-C----CCCCHHHHHHH---
Q 009977 223 EVLKEMKKSQMSYPNL-ITYSTL------IDGL-CK--NG----RFREAIELFEEMVSKD-Q----ILPDALTYNVL--- 280 (521)
Q Consensus 223 ~~~~~~~~~~~~~~~~-~~~~~l------~~~~-~~--~g----~~~~A~~~~~~~~~~~-~----~~~~~~~~~~l--- 280 (521)
..+.++..... .+. ..|+.. +... ++ .| -+-.|...++++...- | .+.+..+++.+
T Consensus 182 ~~Y~ral~tP~--~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 182 NGYMRALQTPM--GNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHHHcCcc--ccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 67777765433 232 233211 1100 00 11 1445666666654310 1 11122222221
Q ss_pred --------HHHHHhC-----CC--HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 009977 281 --------IDGFCRG-----GK--VDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI 345 (521)
Q Consensus 281 --------~~~~~~~-----~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 345 (521)
|.--... |+ .....-++++.... +...+.+|.---..+...++-+.|....+..... .|.
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps-- 334 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS-- 334 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--
Confidence 1110000 00 01111122222221 1222333333333444566777777666554331 232
Q ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHH--------------cCC---------------CCcHhHHHHHHHHHHhcCCH
Q 009977 346 GYTTLI-NCFCRAGRVDEALELLKEMKE--------------RGC---------------KADIVTFNIILGGLCREGKI 395 (521)
Q Consensus 346 ~~~~l~-~~~~~~~~~~~A~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~g~~ 395 (521)
.+..+ ..|.-.++-++....|+.... .+. ..-..+|...+..-.+....
T Consensus 335 -L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl 413 (660)
T COG5107 335 -LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGL 413 (660)
T ss_pred -hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhH
Confidence 11111 112222222222222221110 000 00123456666666777788
Q ss_pred HHHHHHHHHHHHCC-CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHH
Q 009977 396 EEALGMLEKLWYDG-IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYAT-SNELLVRLCKAGMAEDAAIALF 473 (521)
Q Consensus 396 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~ 473 (521)
+.|..+|-++.+.+ +.++...+++++..+ ..|+..-|..+|+--+.. -||... .+..+..+.+.++-+.|..+|+
T Consensus 414 ~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 414 EAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 99999999999887 566777888888865 468888999999876643 344444 3566777788999999999999
Q ss_pred HHHHCCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 474 GLVEMGFKPE--SDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 474 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
...+. +..+ ...|..+++--..-|+...+..+=++|.+.-|
T Consensus 491 tsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 491 TSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 76642 1222 47888898888888999988888888776544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0073 Score=36.24 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 451 TSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
++..+...|.+.|++++|+++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555666666666666666665554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.85 Score=43.05 Aligned_cols=57 Identities=11% Similarity=-0.031 Sum_probs=25.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
+..++-+.|+.++|.+.++++++......+..+...|+..+...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 333444445555555555555432211112234444555555555555555555444
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.021 Score=34.20 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYST 243 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 243 (521)
++..+...|...|++++|.++|+++.+..| .|...|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P--~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP--DDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CCHHHHHH
Confidence 344555555556666666666666555554 34444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.1 Score=39.81 Aligned_cols=152 Identities=11% Similarity=-0.059 Sum_probs=80.8
Q ss_pred hcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHH----HHHHHHHhcCCH
Q 009977 107 RYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIS----TCLNLLIESNQV 182 (521)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~ 182 (521)
..|+..+|...++++++. .|-+--++...=.+|.-.|+.+.-...++++... -.++...|. .+.-++.+.|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 456667777777776654 3444445555555666667666666666666432 122322222 123344456777
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 009977 183 DLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMS--YPNLITYSTLIDGLCKNGRFREAIEL 260 (521)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 260 (521)
++|++.-++..+- .+-|..+..++...+-..|+..++.++..+-...--. ..-..-|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 7777666665531 2335556666666666677777776666553221100 01111122233345555777777777
Q ss_pred HHH
Q 009977 261 FEE 263 (521)
Q Consensus 261 ~~~ 263 (521)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 754
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.75 Score=36.68 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=25.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 212 HCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 212 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
+...|.++......+.+...+.+ .-...-..|.-+-.+.|++.+|.++|..+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~-mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNP-MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCCh-hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34455555555544444332221 1222334444455555555555555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.2 Score=37.56 Aligned_cols=90 Identities=22% Similarity=0.130 Sum_probs=56.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCccCH---HHHHHHHHHHHcCC
Q 009977 353 CFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD-GIYLNK---ASYRIVLNFSCQKG 428 (521)
Q Consensus 353 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~g 428 (521)
++...|+.+.|++.|.+.+..-++ ....||.-.+++--.|+.++|++-+++..+. |.+ .. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 455667777777777776665433 5667777777777777777777777766654 322 21 22333344566677
Q ss_pred CHHHHHHHHHHHHHCC
Q 009977 429 ELEKAIELLRLMLCRG 444 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~ 444 (521)
+-+.|..-|+.+.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777666554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.2 Score=38.38 Aligned_cols=225 Identities=22% Similarity=0.127 Sum_probs=128.9
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCcchHHHHHHHHHhcCCHHHHH
Q 009977 251 NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN-GCNPNVFNYTTLMNGFCKEGKLQEAK 329 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 329 (521)
.+....+...+...............+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666544211112456666677777777777777777766642 22344455666666677777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 330 EVFDEMKNFLLKPDTIGYTTLIN-CFCRAGRVDEALELLKEMKERGC--KADIVTFNIILGGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 406 (521)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777776543332 122222222 56677777777777777754321 1123333344444556667777777777766
Q ss_pred HCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 407 YDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH-YATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..........+..+...+...++++.+...+...... .|+ ...+..+...+...+..+++...+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6522113455666666666667777777777776642 332 333344444444555667777666666654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.83 Score=35.92 Aligned_cols=128 Identities=14% Similarity=0.166 Sum_probs=78.1
Q ss_pred CChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHH
Q 009977 60 ISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKH 139 (521)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (521)
.....++..+...+.+..+..+++++.... +.+...++.++..|++.+. .+....+.. . .+..-...+++.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHH
Confidence 345567888888888999999999886553 3577788888888887643 333333332 1 111223356777
Q ss_pred HHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 140 FSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIES-NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
|.+.+.++++.-++.++. -+...+..+... ++++.|.++..+. .+...|..++..+.
T Consensus 79 c~~~~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l 136 (140)
T smart00299 79 CEKAKLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALL 136 (140)
T ss_pred HHHcCcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHH
Confidence 777777777777777663 123333444444 6667776666542 24456666665554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.3 Score=41.80 Aligned_cols=119 Identities=11% Similarity=0.048 Sum_probs=56.7
Q ss_pred cHHHHHHHHHhhccccCCCCCH-hHHHHHHHHHHh---------cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh
Q 009977 145 LHERVLEMFHKIHPITREKPSL-KAISTCLNLLIE---------SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCK 214 (521)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 214 (521)
..+.|+.+|.+........|+. ..|..+..++.. ..+..+|.++-+...+. -+.|..+...+..+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 3456666777765222333332 223222222211 12233444444444431 23345555555555555
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
.|+++.|..+|++....+| ....+|......+.-.|+.++|.+.+++..+.
T Consensus 351 ~~~~~~a~~~f~rA~~L~P--n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHST--DIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcchhhHHHHHHHHhhcCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 5556666666666655554 23344444444455556666666666665544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.2 Score=40.38 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=123.5
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
..-+++..+..+..++-...+-.+++.- ..+.-.|..++++|... ..++-..+++++.+..+ +......-+..+
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~ 141 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADK 141 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHH
Confidence 3445777788888888888888888644 45677788999999888 56778899999888763 334444433344
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE--SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
...++.+++...|.++....-..........+..-+.. ..+.+....+...+....|...-...+..+-.-|....++
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 44488888888888764211111111222223333333 5677888888888877666666677788888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (521)
++|++++..+.+.+. .|+.+-..++.-+.
T Consensus 222 ~eai~Ilk~il~~d~--k~~~ar~~~i~~lR 250 (711)
T COG1747 222 TEAIRILKHILEHDE--KDVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHHHHhhhcc--hhhhHHHHHHHHHH
Confidence 999999998888765 56666655655443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.47 E-value=1 Score=35.95 Aligned_cols=124 Identities=16% Similarity=0.208 Sum_probs=68.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHH-HHHHH--HHHHHhCCC
Q 009977 213 CKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDAL-TYNVL--IDGFCRGGK 289 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~ 289 (521)
.+.|..++|+.-|..+.+.|...-.+...........+.|+...|...|+++-... ..|-.. -...| .-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhcccc
Confidence 45566677777777777666431222223334445666777777777777765432 222211 11111 122345667
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 290 VDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
++......+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777666666655444333333444566666677777777777777655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.5 Score=37.81 Aligned_cols=227 Identities=23% Similarity=0.138 Sum_probs=142.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (521)
.+....+...+...............+......+...+.+..+...+...............+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666654431113566677777788888888888888777642012444556666777777777888888
Q ss_pred HHHHHHHHcCCCCCcchHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 295 KIMEFMKNNGCNPNVFNYTTLMN-GFCKEGKLQEAKEVFDEMKNFLL--KPDTIGYTTLINCFCRAGRVDEALELLKEMK 371 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 371 (521)
+.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888777654222 222333333 67788888888888888755211 1123334444444566778888888888877
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 372 ERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 372 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
..........+..+...+...++++.+...+......... ....+..+...+...+..+++...+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6532213556777777777788888888888877765322 2333444444444666788888887777743
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.5 Score=39.44 Aligned_cols=142 Identities=16% Similarity=0.189 Sum_probs=64.0
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCH---hHH-HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSL---KAI-STCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
-+.+++.++.++|.++.......|.. ..+ ..++++|. .++.+.....+....+..+-.+-...+- .-.+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~--~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFK--ALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHH--HHHHHHhh
Confidence 45678888888888775322222221 111 22334433 3444444444444443333222222222 22334566
Q ss_pred ChHHHHHHHHHHHhC--CCC--CCCHH---------HHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCHHHHHHH
Q 009977 217 TLESAFEVLKEMKKS--QMS--YPNLI---------TYSTLIDGLCKNGRFREAIELFEEMVSKD---QILPDALTYNVL 280 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~--~~~--~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l 280 (521)
++.+|.+.+...... +.. ..|.. .=+..+.++...|++.++..+++++..+- ...-+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 677776666655443 111 00111 11334455556666666666666655431 011345555554
Q ss_pred HHHHH
Q 009977 281 IDGFC 285 (521)
Q Consensus 281 ~~~~~ 285 (521)
+-.+.
T Consensus 174 vlmls 178 (549)
T PF07079_consen 174 VLMLS 178 (549)
T ss_pred HHHHh
Confidence 44433
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.2 Score=35.41 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=28.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 212 HCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 212 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
-.+.++.+.+..+++.+.-..|..+...++..+ .+...|+|.+|+.+|+++...
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 344556666666666665554433333333332 355666666666666666443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.27 Score=40.07 Aligned_cols=95 Identities=18% Similarity=0.074 Sum_probs=59.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCccC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDGIYLN----KASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHY-ATSNELLVRLC 460 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 460 (521)
..-+...|++++|..-|..++..-+... ...|..-..++.+.+.++.|+.-..+.++ +.|+. ..+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHH
Confidence 3456778888888888888777522211 12344444566777888888887777774 34422 22222344677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 461 KAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
+...+++|+.-|.++++. .|..
T Consensus 180 k~ek~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHh--Ccch
Confidence 777788888888888776 3444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.3 Score=34.86 Aligned_cols=126 Identities=13% Similarity=0.165 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHH
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLI 177 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (521)
...++..+...+........++.+...+ +.+....+.++..|++.. .++.++.++. ..+......+++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3456667766777888888888877776 356667777777777643 3444444442 122233445666666
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR-GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (521)
+.+-++++.-++.++- -+...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~~-------~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVKQ-------NNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHhC-------CCHHHHHHHHHHHH
Confidence 6666666666665441 112223333333 5666666655531 34445655555443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.04 E-value=4.3 Score=40.71 Aligned_cols=106 Identities=9% Similarity=0.017 Sum_probs=67.2
Q ss_pred HHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc
Q 009977 136 LMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR 215 (521)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (521)
=++.+.+.+.+++|+++.+..........-.......+..+...|++++|-...-.|.. .+..-|..-+..+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFAEL 436 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhccc
Confidence 35566777889999988877642111111345667778888888999888887777653 2555666666777666
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009977 216 GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK 250 (521)
Q Consensus 216 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (521)
++......+ +. .+++..+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lP-t~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LP-TGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CC-CCCcccCchHHHHHHHHHHH
Confidence 665443332 22 23323456677777777766
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.97 E-value=2.1 Score=36.84 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC---C-------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMS---Y-------PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA 274 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 274 (521)
-..|...|...|++.+..+++.++...-.. . .-...|..-+..|....+-.+-..+|++.+.....-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345677777778887777777776542111 0 113445556666777777666667777665543344544
Q ss_pred HHHHHHHH----HHHhCCCHHHHHH
Q 009977 275 LTYNVLID----GFCRGGKVDRAKK 295 (521)
Q Consensus 275 ~~~~~l~~----~~~~~~~~~~a~~ 295 (521)
.....+-. +..+.|.+++|..
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHh
Confidence 44333322 2334566666643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.081 Score=29.33 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 485 DSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
..+..+...+...|++++|.+.|++.++.+|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34566777777777777777777777776664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.2 Score=33.70 Aligned_cols=61 Identities=18% Similarity=0.029 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 009977 453 NELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 453 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 514 (521)
...++.+...|+-++-.+++..+.+.+ .++++....+..+|.+.|+..+|.+++.++-+++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334455556666666666665555322 4555666666666666666666666666665554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.068 Score=29.37 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=24.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 487 WALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
+..++.++.+.|++++|.+.|++++++.|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456777888888888888888888887764
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.75 E-value=5.1 Score=40.10 Aligned_cols=273 Identities=18% Similarity=0.075 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHHH
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDG-----LCKNGRFREAIELFEEMVS-------KDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~ 285 (521)
...|.++++...+.|. ......++.+ +....+.+.|+.+|+.+.+ . + .......+..+|.
T Consensus 228 ~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHh
Confidence 3567777777666543 2222222222 2345567777777777755 2 1 2234566666666
Q ss_pred hCC-----CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 009977 286 RGG-----KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE---GKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFC-- 355 (521)
Q Consensus 286 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 355 (521)
+.. +...|..++...-+.| .|+... .+...+..- .+...|.++|......|.. ..+-.+..+|.
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G 373 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELG-NPDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELG 373 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcC-CchHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhC
Confidence 643 5667888888777776 333322 333333322 3567888888887776533 22222222221
Q ss_pred --hcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHH-HHH---Hc---
Q 009977 356 --RAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVL-NFS---CQ--- 426 (521)
Q Consensus 356 --~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~--- 426 (521)
-..+.+.|..++++.-+.| .|...--...+..+.. ++.+.+.-.+..+...|.+ ...+-...+ ... ..
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~ 450 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRG 450 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccc
Confidence 2346778888888887776 2222222222333333 6666666666666555443 222211111 111 11
Q ss_pred -CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----cc
Q 009977 427 -KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKA----GMAEDAAIALFGLVEMGFKPESDSWALLVELIC----RG 497 (521)
Q Consensus 427 -~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 497 (521)
..+...+...+......| +......+.+.|... .+++.|...+......+ ....-.+...+- -.
T Consensus 451 ~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~ 523 (552)
T KOG1550|consen 451 VISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIK 523 (552)
T ss_pred cccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcc
Confidence 224556666666665433 333444444444322 24677777777666553 222222222222 23
Q ss_pred CcHHHHHHHHHHHHHcCc
Q 009977 498 RKLLFAFELLDELVIKES 515 (521)
Q Consensus 498 g~~~~A~~~~~~m~~~~~ 515 (521)
. +..|.+++++..+.++
T Consensus 524 ~-~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 524 V-LHLAKRYYDQASEEDS 540 (552)
T ss_pred h-hHHHHHHHHHHHhcCc
Confidence 3 6778888877776543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.055 Score=30.66 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=12.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHH
Q 009977 487 WALLVELICRGRKLLFAFELLDE 509 (521)
Q Consensus 487 ~~~l~~~~~~~g~~~~A~~~~~~ 509 (521)
|..|...|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555556666666666655
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.086 Score=29.29 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 485 DSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
.+|..++.++...|++++|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.7 Score=33.02 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 416 SYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
.....+......|.-+.-.++++.+.+ .-.+++..+..+..+|.+.|+..++..++.++-+.|
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344445555566666666666666554 235566666666666666666666666666666555
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.61 Score=41.01 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=47.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 009977 379 IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC-----RGFLPHYATSN 453 (521)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~ 453 (521)
..++..++..+...|+.+.+...++++....+. +...|..++.+|...|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 445666666677777777777777777666443 666677777777777777777777766654 25566555433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.27 E-value=7.3 Score=39.91 Aligned_cols=230 Identities=13% Similarity=0.128 Sum_probs=120.9
Q ss_pred HHHccCcHHHHHHHHHhhccccCC---CCCHh---HHHHH-HHHHHhcCCHHHHHHHHHHhhhcC---CCCCcHHHHHHH
Q 009977 139 HFSNCSLHERVLEMFHKIHPITRE---KPSLK---AISTC-LNLLIESNQVDLAQNFLKYSNQHL---RLKPNTCIFNIL 208 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~---~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l 208 (521)
.....+++.+|..++.++....+. .+... .+..+ ..+....|++++|.++-+...... ...+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345568888888888776432221 11111 12222 223445788899988888776532 223356677888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHH---HHHHH--HHHHHhcCC--hHHHHHHHHHHHhcCC--CC---CCHHH
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLI---TYSTL--IDGLCKNGR--FREAIELFEEMVSKDQ--IL---PDALT 276 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~g~--~~~A~~~~~~~~~~~~--~~---~~~~~ 276 (521)
..+..-.|++++|..+..+..+..-. -++. .|..+ ...+...|+ +.+.+..|........ .+ +-..+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~-~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQ-HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 88888999999999888876553221 2322 23322 334566773 3334444443322210 11 11233
Q ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCcchH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHH
Q 009977 277 YNVLIDGFCRG-GKVDRAKKIMEFMKNNGCNPNVFNY--TTLMNGFCKEGKLQEAKEVFDEMKNFLLKP----DTIGYTT 349 (521)
Q Consensus 277 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~ 349 (521)
+..++.++.+. +...++..-+.........+-.... ..|+..+...|+.++|...++++......+ +..+-..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 44445555441 1222222323322222212222222 367788888999999999988876532222 2222222
Q ss_pred HH--HHHHhcCCHHHHHHHHHH
Q 009977 350 LI--NCFCRAGRVDEALELLKE 369 (521)
Q Consensus 350 l~--~~~~~~~~~~~A~~~~~~ 369 (521)
.+ ......|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 22 234457888877766554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.51 Score=40.79 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=34.8
Q ss_pred cHhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 378 DIVTFNIILGGLCRE-----GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 378 ~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
|..+|...+..+... +.++=....++.|.+.|+.-|..+|+.|+..+-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 667777777777543 456666667777888888888888888887764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.8 Score=34.40 Aligned_cols=57 Identities=11% Similarity=-0.050 Sum_probs=25.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 009977 456 LVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 456 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 514 (521)
.+.....|.+++|...++...+.+. .......-.+++...|+.++|+..|++.++.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3344455555555555443332211 11112223345555555555555555555553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.92 Score=37.28 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccC--HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLN--KASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
.+..++..|.+.|+.+.|.+.+.++......+. ...+..++......+++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555555555555555555555544322211 2233344444445555555555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.89 E-value=4.7 Score=36.35 Aligned_cols=127 Identities=19% Similarity=0.208 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCCC---CcHhHHHHHHHHHHhcCC---
Q 009977 327 EAKEVFDEMKNFLLKPDTIGYTTLINCFCR--AG----RVDEALELLKEMKERGCK---ADIVTFNIILGGLCREGK--- 394 (521)
Q Consensus 327 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~--- 394 (521)
+...+++.+.+.|...+..+|-+....... .. ....|..+|+.|.+..+. ++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555666666666554444332222211 11 234566666666665321 233444444332 2222
Q ss_pred -HHHHHHHHHHHHHCCCccCH--HHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009977 395 -IEEALGMLEKLWYDGIYLNK--ASYRIVLNFSCQKGE--LEKAIELLRLMLCRGFLPHYATSNEL 455 (521)
Q Consensus 395 -~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l 455 (521)
.+.+..+++.+...|...+. .....++..+..... ..++.++++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23445555555555443322 222223322222211 33566666666666666655544433
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.86 E-value=15 Score=42.16 Aligned_cols=325 Identities=13% Similarity=0.074 Sum_probs=168.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009977 171 TCLNLLIESNQVDLAQNFLKYSNQHLR-LKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249 (521)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (521)
.+..+-.+.+.+.+|...++.-..... -.-....+..+...|...+++|....+...-... |+ ....+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----PS---LYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----cc---HHHHHHHHH
Confidence 344555677888888888887311100 0112234445555899999999888777641110 22 233445567
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH-HHHHHhcCCHHHH
Q 009977 250 KNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL-MNGFCKEGKLQEA 328 (521)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A 328 (521)
..|+++.|...|+.+...+ ++...+++.++......|.++...-..+-..... .+....++.+ +.+--+.++++..
T Consensus 1461 ~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhh
Confidence 7899999999999998764 3446677777777777888887777666555432 2333333332 3333566677766
Q ss_pred HHHHHHHHhCCCCCCHHHHHH--HHHHHHhc--CCHHHHHHHHHHHHHcCCCC---------cHhHHHHHHHHHHhcCCH
Q 009977 329 KEVFDEMKNFLLKPDTIGYTT--LINCFCRA--GRVDEALELLKEMKERGCKA---------DIVTFNIILGGLCREGKI 395 (521)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~--~~~~~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~ 395 (521)
...+. .. +...|.. +...+.+. .+.-.-.+..+.+.+.-+.| -...|..++....-.. .
T Consensus 1538 e~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l 1609 (2382)
T KOG0890|consen 1538 ESYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-L 1609 (2382)
T ss_pred hhhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-H
Confidence 66554 11 1222222 22222222 11111112222222211100 1123333333322111 1
Q ss_pred HHHHHHHHHHHHC-CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HCCCCC-----CHHHHHHHHHHHHhcCCHHHH
Q 009977 396 EEALGMLEKLWYD-GIYLNKASYRIVLNFSCQKGELEKAIELLRLML-CRGFLP-----HYATSNELLVRLCKAGMAEDA 468 (521)
Q Consensus 396 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~p-----~~~~~~~l~~~~~~~g~~~~a 468 (521)
+...+.+...... ...-+...|..-+.--....+..+-+-.+++.. .....| -..+|....+.....|.++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 1111111111110 111122223222221111112222222222222 211222 456788888888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 469 AIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
...+-++.+.+ -+..+...++.+...|+...|+.++++.++++=.
T Consensus 1690 ~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1690 QNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 98887777654 3456667788888999999999999999876433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.94 Score=39.89 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCccCHHHHH
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWY-----DGIYLNKASYR 418 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 418 (521)
..++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|+..|+.+.. .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345566677777777777777777777776544 667777788888888877777777776654 36777666655
Q ss_pred HHHHH
Q 009977 419 IVLNF 423 (521)
Q Consensus 419 ~l~~~ 423 (521)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.16 Score=28.69 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEM 264 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~ 264 (521)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.83 Score=43.98 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=48.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009977 213 CKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDR 292 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 292 (521)
.+.|+++.|.++..+. .+..-|..|..+....|++..|.+.|.+... |..|+-.+...|+-+.
T Consensus 648 l~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhcCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhH
Confidence 3455555555554432 2344456666666666666666655554422 2334444455555544
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDE 334 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 334 (521)
...+-....+.| ..| ....+|...|+++++.+++.+
T Consensus 711 l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 711 LAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 444444444444 212 222334455555555555543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.7 Score=35.73 Aligned_cols=98 Identities=8% Similarity=-0.013 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcC--HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHH-
Q 009977 96 ATYATILDKLARYKKFEAVDAVLRQMTYETCKFH--EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTC- 172 (521)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 172 (521)
..+..++..|.+.|+.+.|.+.|.++.+....+. ...+..+++.....|++..+...+.+.........++..-+.+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3466777777777888888777777766543322 3355567777777777777777766665432222222221111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHhh
Q 009977 173 ---LNLLIESNQVDLAQNFLKYSN 193 (521)
Q Consensus 173 ---l~~~~~~~~~~~a~~~~~~~~ 193 (521)
.-.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 112223566666665555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.43 E-value=9.3 Score=38.26 Aligned_cols=275 Identities=16% Similarity=0.039 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHH-HHhcCChHHHHHHHHHHHh-------CCCCCCCHHHHHHHHHHHHhcC-
Q 009977 182 VDLAQNFLKYSNQHLRLKPNTCIFNILIKH-HCKRGTLESAFEVLKEMKK-------SQMSYPNLITYSTLIDGLCKNG- 252 (521)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g- 252 (521)
...|.++++.........+-...-...... +....+.+.|+.+|+.+.+ .+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhcCCC
Confidence 467888888775542222221122222222 4467789999999999876 33 2335666777777743
Q ss_pred ----ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH----h
Q 009977 253 ----RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG---GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFC----K 321 (521)
Q Consensus 253 ----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 321 (521)
+.+.|..+|.+.-..+ .|+.... +...+... .+...|.++|....+.|. ...+..+..+|. .
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG--NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGV 376 (552)
T ss_pred CccccHHHHHHHHHHHHhcC--CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCc
Confidence 6677999999987763 4554433 33333322 467899999999999883 233334444443 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH----Hh----cC
Q 009977 322 EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGL----CR----EG 393 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~----~g 393 (521)
..+...|..++.+..+.| .|....-...+..+.. ++++.+...+..+.+.|.. ...+-...+..- .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccccc
Confidence 347889999999998876 2221211222223333 7777777777777666543 222222111111 01 12
Q ss_pred CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCH
Q 009977 394 KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK----GELEKAIELLRLMLCRGFLPHYATSNELLVRLC----KAGMA 465 (521)
Q Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~ 465 (521)
+.+.+...+.+....| +......+...|..- .+++.|...+......+ ......+...+. -.. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 4556666666665554 345555555554432 35778888888777554 222222333332 123 6
Q ss_pred HHHHHHHHHHHHC
Q 009977 466 EDAAIALFGLVEM 478 (521)
Q Consensus 466 ~~a~~~~~~~~~~ 478 (521)
..|.+++++..+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 7788888877664
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=93.42 E-value=5.2 Score=35.29 Aligned_cols=118 Identities=8% Similarity=0.130 Sum_probs=72.1
Q ss_pred CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh-cCC-HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHH
Q 009977 144 SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE-SNQ-VDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESA 221 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 221 (521)
....+|+++|+........-.|..+...+++.... .+. ...--++.+.+....+..++..+...++..++..++|.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34556777776443212234556666677766665 222 2222244444444445666777777778888888888888
Q ss_pred HHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009977 222 FEVLKEMKKS-QMSYPNLITYSTLIDGLCKNGRFREAIELFE 262 (521)
Q Consensus 222 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 262 (521)
.++++..... ++. .|...|...+......|+..-..++.+
T Consensus 222 ~~fW~~~~~~~~~~-~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPG-NDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCC-CCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 8777776655 333 677778888888888887665554443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.42 E-value=2.1 Score=41.47 Aligned_cols=149 Identities=14% Similarity=0.169 Sum_probs=101.9
Q ss_pred cCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 009977 108 YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQN 187 (521)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 187 (521)
.|+++.|..++..+. ......+++.+.+.|..++|+++- +|+.. -.....+.|+++.|.+
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHHHHHH
Confidence 455555555444332 235567888888999999988753 22211 1234567899999998
Q ss_pred HHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 188 FLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
+..+. .+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.
T Consensus 659 la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 659 LAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 87765 3667899999999999999999999986543 555677777788876665555555444
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 268 DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
+ . .|....+|...|+++++.+++..-
T Consensus 722 g--~-----~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 722 G--K-----NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c--c-----cchHHHHHHHcCCHHHHHHHHHhc
Confidence 2 1 244445677889999998887643
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.91 Score=39.34 Aligned_cols=87 Identities=17% Similarity=0.241 Sum_probs=51.7
Q ss_pred CCcchHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 009977 307 PNVFNYTTLMNGFCK-----EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAG----------------RVDEALE 365 (521)
Q Consensus 307 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~A~~ 365 (521)
-|-.+|...+..+.. .+..+=.-..++.|.+.|+..|..+|+.|+..+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 345566666655543 2445555556677777777778888887777653321 2233555
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 009977 366 LLKEMKERGCKADIVTFNIILGGLCREG 393 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (521)
++++|...|+.||..+-..+++++.+.+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 6666666666666666666666665554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.15 Score=28.33 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 009977 237 NLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A 257 (521)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.96 E-value=4.5 Score=33.27 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=59.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNT----CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDG 247 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (521)
+...+...+++++|...++..+.. +.|. .+-..|.+.....|.+|+|+..++.....+. .......-+++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w---~~~~~elrGDi 168 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW---AAIVAELRGDI 168 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH---HHHHHHHhhhH
Confidence 345667778888888877766532 2222 2334466777788888888888877655332 22233445677
Q ss_pred HHhcCChHHHHHHHHHHHhcC
Q 009977 248 LCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~ 268 (521)
+...|+-++|..-|++.+...
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888888888888888887653
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.87 E-value=4 Score=32.47 Aligned_cols=15 Identities=47% Similarity=0.720 Sum_probs=6.0
Q ss_pred hcCCHHHHHHHHHHH
Q 009977 356 RAGRVDEALELLKEM 370 (521)
Q Consensus 356 ~~~~~~~A~~~~~~~ 370 (521)
..|++.+|+.+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.81 E-value=13 Score=38.02 Aligned_cols=176 Identities=13% Similarity=0.155 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH----HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHH
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK----HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCL 173 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 173 (521)
...-+..+.+...++-|..+-+.-. .+......+.+ .+.+.|++++|...|-+-. .-..|+ .++
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s-----~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEPS-----EVI 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCChH-----HHH
Confidence 4456677777888888888766532 23334444444 4457799999999886654 222332 234
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR 253 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (521)
.-+....+..+-..+++.+.+. |+ .+...-..|+.+|.+.++.++-.++.+... .|...-| ....+..+.+.+-
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~sny 478 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNY 478 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhCh
Confidence 4445555666666677776654 33 344456678899999999998888777654 3322123 2345666677777
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009977 254 FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM 300 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (521)
.++|..+-.+... .......+ +-..+++++|++++..+
T Consensus 479 l~~a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 479 LDEAELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7777766555422 22333333 33567788888777654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.14 Score=28.48 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHH
Q 009977 483 ESDSWALLVELICRGRKLLFAF 504 (521)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~ 504 (521)
+...|..+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3456666666666666666654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.53 E-value=4.1 Score=31.82 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=29.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
..++.+++..+++.|.-..|..+...++-..+ +...|+|++|+.+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 35666666666666665554333444443333 55666777777777666544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.51 E-value=5.6 Score=33.29 Aligned_cols=181 Identities=13% Similarity=0.059 Sum_probs=87.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 293 (521)
..|-++-|.-=|.+.....| .-+.+||-++--+...|+++.|.+.|+...+.+ +....+...-.-++.-.|++.-|
T Consensus 77 SlGL~~LAR~DftQaLai~P--~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 77 SLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCC--CcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhh
Confidence 34444455555555555554 234567777777888888888888888887663 22222222222334446777777
Q ss_pred HHHHHHHHHcCCCCCcchHHHHH-HHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHH
Q 009977 294 KKIMEFMKNNGCNPNVFNYTTLM-NGFCKEGKLQEAKEVF-DEMKNFLLKPDTIGYTTLIN-CFCRAGRVDEALELLKEM 370 (521)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~ 370 (521)
.+-+-..-+.+ +.|+ |..|- -.--+.-+..+|..-+ ++... .|..-|...+- .|...=..+. +++++
T Consensus 153 q~d~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~---l~~~~ 222 (297)
T COG4785 153 QDDLLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET---LMERL 222 (297)
T ss_pred HHHHHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH---HHHHH
Confidence 76666655543 2222 22221 1111223455555433 33332 23333333222 2221111111 23333
Q ss_pred HHcCCC------CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 371 KERGCK------ADIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 371 ~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
...... .=..||--+..-+...|+.++|..+|+-....
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 221100 01235555666666677777777777666544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.28 E-value=8.8 Score=35.28 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhcCC------------chHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccc
Q 009977 92 NHNNATYATILDKLARYKK------------FEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPI 159 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (521)
|.|..+|..++..--..-. .+.-..++++.++.+ +.+...+..++..+.+..+.++..+.++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~- 93 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF- 93 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-
Confidence 5567777776654322211 234455666666664 45556666677777766666776666766652
Q ss_pred cCCCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHh
Q 009977 160 TREKPSLKAISTCLNLLIE---SNQVDLAQNFLKYS 192 (521)
Q Consensus 160 ~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~ 192 (521)
..+.+...|...+..... .-.++....+|.+.
T Consensus 94 -~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 94 -KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred -HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 223344455555543332 12344444444443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.24 E-value=2.1 Score=32.60 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
|.-++.+.++++.+.++.+.+++.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhh
Confidence 444445555555555555544443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.93 E-value=16 Score=37.23 Aligned_cols=191 Identities=15% Similarity=0.004 Sum_probs=91.0
Q ss_pred hCCCHHHHHHHHHHHHHcCC-CCC-------cchHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHH
Q 009977 286 RGGKVDRAKKIMEFMKNNGC-NPN-------VFNYTTLMNGFCKEGKLQEAKEVFD--------EMKNFLLKPDTIGYTT 349 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~ 349 (521)
-.+++..|...+..+.+... .|+ +..+...+-.+-..|+.+.|...|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 46788888888888775321 111 2233333344456788999999987 4444444444333322
Q ss_pred H--HHHHH--hcCCHHH--HHHHHHHHHHc---CCCCcHhHHHHH-HHHHHhcC--CHHHHHHHHHHHH-----HCCC-c
Q 009977 350 L--INCFC--RAGRVDE--ALELLKEMKER---GCKADIVTFNII-LGGLCREG--KIEEALGMLEKLW-----YDGI-Y 411 (521)
Q Consensus 350 l--~~~~~--~~~~~~~--A~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~g--~~~~a~~~~~~~~-----~~~~-~ 411 (521)
+ +..+. ...+.++ +..+++.+... ....+..++..+ +.++.... ...++...+.... ..+. .
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 1 11222 2223333 67777766542 122233333333 33332211 1123333333222 1111 1
Q ss_pred cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCC--CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 412 LNKASYRIVLNFSCQKGELEKAIELLRLMLCRG-FLP--HYATSN-----ELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
.-..+++.+...+. .|+..+............ -.| ....|. .+...+...|+.++|.....+...
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11223333333333 677776665555433211 112 334442 234457788999999888776543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.51 Score=41.94 Aligned_cols=97 Identities=11% Similarity=-0.059 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009977 384 IILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAG 463 (521)
Q Consensus 384 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 463 (521)
--..-|.+.|.+++|++.+.......+. ++.++..-..+|.+...+..|..-...++... +.-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 3466788899999999999887765322 77788888888888888888877777666321 111122333333333455
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 009977 464 MAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~ 484 (521)
...+|.+-++..++. .|+.
T Consensus 180 ~~~EAKkD~E~vL~L--EP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL--EPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhh--Cccc
Confidence 667777777776665 5654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=9.4 Score=34.24 Aligned_cols=233 Identities=12% Similarity=0.046 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHcCCCCCcch
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV----DRAKKIMEFMKNNGCNPNVFN 311 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 311 (521)
+|.......+.++...|. +++...+..+... +|...-...+.++...|+. +++...+..+... .++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 666666666667666664 3344444444332 3445555556666666653 3455555555332 345545
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 009977 312 YTTLMNGFCKEGKL-----QEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIIL 386 (521)
Q Consensus 312 ~~~l~~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 386 (521)
-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ++++..+-.+.+. ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 54555555444321 122333333222 2344444455555555554 3455555555442 2333444444
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 387 GGLCREG-KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465 (521)
Q Consensus 387 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (521)
.++.+.+ +...+...+..+... ++..+-...+.++.+.|+ ..++..+-+..+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 4444432 133444444444432 344555555666666665 34444444444321 2 223455566666664
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009977 466 EDAAIALFGLVEMGFKPESDSWALLVELI 494 (521)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (521)
+|...+.++.+. .||..+-...++++
T Consensus 252 -~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 -TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred -hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 466666665543 24555544444443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.42 Score=26.37 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=20.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 486 SWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
+|..+...|...|++++|.+.|++.++-++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666667777777777777777766554
|
... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.53 E-value=6.3 Score=31.80 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=61.0
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc--CcHHHHHHHHHhhc
Q 009977 80 EIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC--SLHERVLEMFHKIH 157 (521)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~ 157 (521)
++...+ ...+++++...+..+++.+.+.|++....+++.- ++-+|.......+-.+... .-..-+++++.++.
T Consensus 15 EYirSl-~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSL-NQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 344444 4567888888999999999999987765555443 4444444443333222221 22445566666653
Q ss_pred cccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009977 158 PITREKPSLKAISTCLNLLIESNQVDLAQNFLKYS 192 (521)
Q Consensus 158 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 192 (521)
..+..+++.+...|++-+|.++.+..
T Consensus 90 ---------~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 ---------TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---------hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 14566677777888888888877654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.26 E-value=3.1 Score=34.26 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=41.2
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 009977 248 LCKNGRFREAIELFEEMVSKDQILPD-----ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE 322 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (521)
+..+|++++|..-|..++... ++. ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 445566666666666555532 221 1223333444555555555555555555543 21222222223445555
Q ss_pred CCHHHHHHHHHHHHh
Q 009977 323 GKLQEAKEVFDEMKN 337 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~ 337 (521)
..+++|++=|..+.+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.88 E-value=20 Score=36.48 Aligned_cols=433 Identities=13% Similarity=0.094 Sum_probs=212.3
Q ss_pred HHHHHHHhhhCCCCCCC--HHHHHHHHHHHH-hcCCchHHHHHHHHhhhccCCcCH-----HHHHHHHHHHHccCcHHHH
Q 009977 78 ALEIFNTVSEQKGFNHN--NATYATILDKLA-RYKKFEAVDAVLRQMTYETCKFHE-----GIFLNLMKHFSNCSLHERV 149 (521)
Q Consensus 78 A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a 149 (521)
|++-++-+.+...++|. ..++..++..|. ...+++.|+..+++.....-.++- ..-..+++.|.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 55556655444434443 345666777766 668899999999877544322111 12224567777777666 8
Q ss_pred HHHHHhhccccCCCC-CH--hHHHHH-HHHHHhcCCHHHHHHHHHHhhhcCC--CCCcHHHHHHHHHHHH--hcCChHHH
Q 009977 150 LEMFHKIHPITREKP-SL--KAISTC-LNLLIESNQVDLAQNFLKYSNQHLR--LKPNTCIFNILIKHHC--KRGTLESA 221 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~-~~--~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~g~~~~A 221 (521)
...+++..+.....+ .. ..+..+ +..+...++...|.+.++.+..... ..|...++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 888777543332211 11 223333 3333334799999999988765433 2333444444544443 45656777
Q ss_pred HHHHHHHHhCCC--------CCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHh---cCCCC-----------------
Q 009977 222 FEVLKEMKKSQM--------SYPNLITYSTLIDGL--CKNGRFREAIELFEEMVS---KDQIL----------------- 271 (521)
Q Consensus 222 ~~~~~~~~~~~~--------~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~---~~~~~----------------- 271 (521)
.+.++++..... ..|-..+|..++..+ ...|+++.+...++++.. .....
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~ 278 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIG 278 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecc
Confidence 777776632111 113456666666544 457776666665554432 10000
Q ss_pred ---------CCHH---------HHHHHHH--HHHhCCCHHHHHHHHHHHHH--------cCCCCCc--------chHHHH
Q 009977 272 ---------PDAL---------TYNVLID--GFCRGGKVDRAKKIMEFMKN--------NGCNPNV--------FNYTTL 315 (521)
Q Consensus 272 ---------~~~~---------~~~~l~~--~~~~~~~~~~a~~~~~~~~~--------~~~~~~~--------~~~~~l 315 (521)
+... .+.-++. ..+..+..++|.+++++..+ ....+.. ..|...
T Consensus 279 ~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~ 358 (608)
T PF10345_consen 279 EGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRY 358 (608)
T ss_pred cccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHH
Confidence 1111 1111122 22334444466555554432 1111111 111111
Q ss_pred H---------HHHHhcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHHHH--HHHHhcCCHHHHHHHHH--------HH
Q 009977 316 M---------NGFCKEGKLQEAKEVFDEMKNFLL-KPD-----TIGYTTLI--NCFCRAGRVDEALELLK--------EM 370 (521)
Q Consensus 316 ~---------~~~~~~~~~~~A~~~~~~~~~~~~-~~~-----~~~~~~l~--~~~~~~~~~~~A~~~~~--------~~ 370 (521)
+ -..+-.+++..|...+..+....- .|+ ...+...+ -.+...|+.+.|...|. ..
T Consensus 359 l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~ 438 (608)
T PF10345_consen 359 LQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAA 438 (608)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhh
Confidence 1 222457889999999988875321 111 12222222 23455799999999997 44
Q ss_pred HHcCCCCcHhHHHHH--HHHHHhcC--CHHH--HHHHHHHHHHC-CCcc--CHHHHH-HHHHHHHcC--CCHHHHHHHHH
Q 009977 371 KERGCKADIVTFNII--LGGLCREG--KIEE--ALGMLEKLWYD-GIYL--NKASYR-IVLNFSCQK--GELEKAIELLR 438 (521)
Q Consensus 371 ~~~~~~~~~~~~~~l--~~~~~~~g--~~~~--a~~~~~~~~~~-~~~~--~~~~~~-~l~~~~~~~--g~~~~a~~~~~ 438 (521)
...+...+...+..+ +-.+...+ ..++ +.++++.+... .-.| +..++. .++.++... -...++...+.
T Consensus 439 ~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~ 518 (608)
T PF10345_consen 439 NRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQ 518 (608)
T ss_pred ccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHH
Confidence 444444344433322 12222222 2223 66666665442 1122 222333 333333221 11224444444
Q ss_pred HHHHC---CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHH-----HHHHHHHccCcHHHHH
Q 009977 439 LMLCR---GFLP---HYATSNELLVRLCKAGMAEDAAIALFGLVEMGF-KP--ESDSWA-----LLVELICRGRKLLFAF 504 (521)
Q Consensus 439 ~~~~~---~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~-----~l~~~~~~~g~~~~A~ 504 (521)
+.++. .... -..+++.+...+. .|+..+............. .| ....|. .+.+.+...|+.++|.
T Consensus 519 ~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~ 597 (608)
T PF10345_consen 519 EALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAE 597 (608)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 33321 1111 1122232333333 6787776655554432111 12 334553 3334567789999999
Q ss_pred HHHHHHHH
Q 009977 505 ELLDELVI 512 (521)
Q Consensus 505 ~~~~~m~~ 512 (521)
....+...
T Consensus 598 ~~~~~~~~ 605 (608)
T PF10345_consen 598 EARQQLDR 605 (608)
T ss_pred HHHHHHHH
Confidence 98877653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.013 Score=46.54 Aligned_cols=84 Identities=14% Similarity=0.261 Sum_probs=58.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccC
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (521)
++..+.+.+.+..+..+++.+... +...+...++.++..|++.++.+.....++.... . -...+++.+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--y-----d~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--Y-----DLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S------CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--c-----CHHHHHHHHHhcc
Confidence 566777788888888888888643 2235688889999999999887887777773222 1 1235677777778
Q ss_pred cHHHHHHHHHhh
Q 009977 145 LHERVLEMFHKI 156 (521)
Q Consensus 145 ~~~~a~~~~~~~ 156 (521)
.+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 888888777765
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.66 E-value=12 Score=33.52 Aligned_cols=233 Identities=12% Similarity=0.056 Sum_probs=114.5
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHhcCCCCCCHH
Q 009977 200 PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRF----REAIELFEEMVSKDQILPDAL 275 (521)
Q Consensus 200 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~ 275 (521)
+|..+....+..+...|. +.+...+..+... +|...-...+.++...|+. .++...+..+... .++..
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~ 106 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSAC 106 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHH
Confidence 344444445555555554 2333333333321 3444444455555555542 3455555555332 23444
Q ss_pred HHHHHHHHHHhCCCH-----HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009977 276 TYNVLIDGFCRGGKV-----DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTL 350 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 350 (521)
.-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+..+.+ .++...-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHH
Confidence 444444444443321 122333333222 2344555566666666665 345555555554 2344444444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC
Q 009977 351 INCFCRAG-RVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE 429 (521)
Q Consensus 351 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (521)
+.++.+.+ +...+...+..+... ++...-...+.++.+.|+. .+...+-...+.+. .....+.++...|+
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCC
Confidence 44444432 233555555555532 3555666667777777763 55555555554422 23356666777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009977 430 LEKAIELLRLMLCRGFLPHYATSNELLVRL 459 (521)
Q Consensus 430 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 459 (521)
. +|+..+..+.+. .||..+-...+.+|
T Consensus 251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 251 K-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred H-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 4 577777777642 34555544444443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.38 E-value=17 Score=34.83 Aligned_cols=167 Identities=12% Similarity=0.102 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 009977 270 ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT 349 (521)
Q Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 349 (521)
.+.|.....+++..+.....+.-.+.+..+|+..| .+-..+..++++|... ..++-..+|+++.+..+. |...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 34455566666666666666666666677776654 3455666666766666 445556666666654322 3333344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC--Cc---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCccCHHHHHHHHHH
Q 009977 350 LINCFCRAGRVDEALELLKEMKERGCK--AD---IVTFNIILGGLCREGKIEEALGMLEKLWYD-GIYLNKASYRIVLNF 423 (521)
Q Consensus 350 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 423 (521)
|+..|-+ ++.+.+..+|..+...-+. .+ ...|..+...- ..+.+..+.+..++... |...-...+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4444433 6666666666666543211 00 11232222211 23445555555555443 222223334444455
Q ss_pred HHcCCCHHHHHHHHHHHHHC
Q 009977 424 SCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~ 443 (521)
|....++++|++++..+++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 55566666666666665543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.82 Score=25.07 Aligned_cols=28 Identities=18% Similarity=-0.001 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 451 TSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.+..+...+...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555556666666666666655543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.26 E-value=42 Score=39.04 Aligned_cols=321 Identities=13% Similarity=0.103 Sum_probs=164.6
Q ss_pred HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH
Q 009977 135 NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCL-NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC 213 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (521)
.+..+-.+++.+.+|+-.+++-......+-....+..++ ..|...+++|....+...... +...+. -+....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~sl~~-qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPSLYQ-QILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------CccHHH-HHHHHH
Confidence 455566788999999999998421111111222333444 489999999988877763211 222333 344567
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHhCCCHHH
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL-IDGFCRGGKVDR 292 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 292 (521)
..|++..|...|+.+...++ +...+++.++......|.++..+...+-.... ..+....++.+ +.+--+.++++.
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p--~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDP--DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCC--ccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhh
Confidence 79999999999999998876 45778888888888888888888776665443 23333333333 334456777777
Q ss_pred HHHHHHHHHHcCCCCCcchHHH--HHHHHHhcCCHHH--HHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhcCC
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTT--LMNGFCKEGKLQE--AKEVFDEMKNFLLKP---------DTIGYTTLINCFCRAGR 359 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~--A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~ 359 (521)
...... . -+..+|.. ++....+...-+. -.+..+.+.+.-+.| -...|..++....-..-
T Consensus 1537 ~e~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1537 LESYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhhhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 766655 1 12222322 2333332222111 111222221110110 01334444433322111
Q ss_pred HHHHHHHHHHHH-HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCcc-----CHHHHHHHHHHHHcCCCHHH
Q 009977 360 VDEALELLKEMK-ERGCKADIVTFNIILGGLCREGKIEEALGMLEKLW-YDGIYL-----NKASYRIVLNFSCQKGELEK 432 (521)
Q Consensus 360 ~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~-----~~~~~~~l~~~~~~~g~~~~ 432 (521)
..... .+.... .....-+..-|..-+..-....+..+-+--+++.. .....| -...|....+.....|+++.
T Consensus 1610 ~~~~~-~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1610 ENSIE-ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHH-HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 11111 000000 00000111122222221111111112111111111 111111 23567777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 433 AIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 433 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
|...+-.+.+.+ . +..+...+..+...|+...|+.++++-++
T Consensus 1689 A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1689 AQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 887777776544 2 33445566777888888888888887774
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.17 E-value=16 Score=34.09 Aligned_cols=64 Identities=20% Similarity=0.138 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKA---DIVTFNIILGGLCREGKIEEALGMLEKLWY 407 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 407 (521)
..+|..++..+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|+..++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5567777777778888888888777776643211 233444445566667777788877777766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.79 Score=26.64 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 485 DSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777776654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.92 Score=24.95 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 240 TYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 240 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
+|..++.++...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.67 E-value=8.1 Score=31.41 Aligned_cols=96 Identities=14% Similarity=0.097 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CC-------hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN---GR-------FREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~-------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
++.|.+.++.-...+| .|...++....++... .. +++|+.-|++.+..+ |-...++..+..+|...
T Consensus 7 FE~ark~aea~y~~nP--~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~--P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP--LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN--PNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc--HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHH
Confidence 3455555555555554 4555544444433332 22 334444455554432 22234555555555443
Q ss_pred C----C-------HHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 009977 288 G----K-------VDRAKKIMEFMKNNGCNPNVFNYTTLMNGF 319 (521)
Q Consensus 288 ~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (521)
+ + +++|...|++..+. .|+..+|+.-+...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 2 1 33344444444443 45555555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.63 E-value=32 Score=36.83 Aligned_cols=138 Identities=20% Similarity=0.143 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIG----YTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIIL 386 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 386 (521)
.|...++.--+.|.+.+|..++. |+... |.+....+.+...+++|.-+|+..-+ ....+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl 972 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKAL 972 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHH
Confidence 33444444445555666655543 34333 33444445556777777666654321 22345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 009977 387 GGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAE 466 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 466 (521)
.+|..+|++.+|+.+..++.....+ -..+-..|+.-+...+++-+|-++..+... .|.. .+..+++...|+
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~~-----av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYLS---DPEE-----AVALLCKAKEWE 1043 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHHH-----HHHHHhhHhHHH
Confidence 6777788888888877766432111 111224566667777888777777776652 2222 344566666777
Q ss_pred HHHHHHHH
Q 009977 467 DAAIALFG 474 (521)
Q Consensus 467 ~a~~~~~~ 474 (521)
+|.++...
T Consensus 1044 eAlrva~~ 1051 (1265)
T KOG1920|consen 1044 EALRVASK 1051 (1265)
T ss_pred HHHHHHHh
Confidence 77776543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.56 E-value=5.7 Score=33.28 Aligned_cols=77 Identities=8% Similarity=0.047 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccC-CCCCHhHHHHHHHH
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITR-EKPSLKAISTCLNL 175 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~ 175 (521)
.+..++.+.+.++..+++.+.+.-++.. |.+......+++.|+-.|++++|..-++-.-.+.. ..+....|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445667778888888888888777665 55666777888888999999998877766533221 23444556666554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.36 E-value=18 Score=33.66 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 272 PDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNP---NVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 272 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
....+|..++..+.+.|.++.|...+..+...+... .+.+...-++..-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888889999999999999998887643221 445566667788888999999998887766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.35 E-value=29 Score=35.90 Aligned_cols=228 Identities=14% Similarity=0.110 Sum_probs=123.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCH-------HHHHHHH-HHHHhcCChHHHHHHHHHHHhcC---CCCCCHHHHHH
Q 009977 211 HHCKRGTLESAFEVLKEMKKSQMSYPNL-------ITYSTLI-DGLCKNGRFREAIELFEEMVSKD---QILPDALTYNV 279 (521)
Q Consensus 211 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~ 279 (521)
......++++|..++.++...-+. |+. ..|+.+- ......|++++|+++.+.....- ...+....+..
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~-~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKA-PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCc-CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 344578899999999887654332 221 2344332 23455788999999988887642 12334556677
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH-----HHHHHhcCCHH--HHHHHHHHHHhCC--CCC----CHHH
Q 009977 280 LIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL-----MNGFCKEGKLQ--EAKEVFDEMKNFL--LKP----DTIG 346 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~--~A~~~~~~~~~~~--~~~----~~~~ 346 (521)
+..+..-.|++++|..+..+..+....-+...+..+ ...+...|+.. +.+..|....... -+| -..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 777888889999999988877664323333333222 23345566333 3333333332210 011 1234
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCcHhH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCc----cCHHHHHH
Q 009977 347 YTTLINCFCR-AGRVDEALELLKEMKERGCKADIVT--FNIILGGLCREGKIEEALGMLEKLWYDGIY----LNKASYRI 419 (521)
Q Consensus 347 ~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~ 419 (521)
...++.++.+ .+...++..-++--......|-... +..++......|+.++|...+.++...... ++...-..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4445555544 1222222222222222222222222 236677788899999999999888764222 22222222
Q ss_pred HHH--HHHcCCCHHHHHHHHHH
Q 009977 420 VLN--FSCQKGELEKAIELLRL 439 (521)
Q Consensus 420 l~~--~~~~~g~~~~a~~~~~~ 439 (521)
.+. .-...|+..++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 22356888777776665
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.01 Score=47.12 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhc
Q 009977 100 TILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIES 179 (521)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (521)
.++..+.+.+.+..+..+++.+...+...+......++..|++.+..++..+.++... ..-...+++.|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--------~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--------NYDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--------SS-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--------ccCHHHHHHHHHhc
Confidence 3566677778888888888888876655667778889999999877777777765321 12334556666667
Q ss_pred CCHHHHHHHHHHh
Q 009977 180 NQVDLAQNFLKYS 192 (521)
Q Consensus 180 ~~~~~a~~~~~~~ 192 (521)
|-++++.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 7776666666543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.29 E-value=21 Score=34.20 Aligned_cols=414 Identities=11% Similarity=0.114 Sum_probs=211.3
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHc-cCcHHHHHHHH
Q 009977 75 PQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN-CSLHERVLEMF 153 (521)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~ 153 (521)
+.+...+|..+.. .++.|+..|...+..+.+.+.+.+...+|.+|.... |.++..|......... .-..+.|..+|
T Consensus 87 ~~rIv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 87 PNRIVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHH
Confidence 4456777777753 357799999999999888888999999999999875 6677777765554443 34489999999
Q ss_pred HhhccccCCCCCHhHHHHHHHHH---H-h-------cC-CH-HHHHHHHHHhhhcCCCCCcHH--HHHHH---HHHHHhc
Q 009977 154 HKIHPITREKPSLKAISTCLNLL---I-E-------SN-QV-DLAQNFLKYSNQHLRLKPNTC--IFNIL---IKHHCKR 215 (521)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~ll~~~---~-~-------~~-~~-~~a~~~~~~~~~~~~~~~~~~--~~~~l---~~~~~~~ 215 (521)
.+-....+..| ..|....+.- . + .| +. ++-.++-+.-.+.....++.. -++.- .......
T Consensus 164 lrgLR~npdsp--~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~ 241 (568)
T KOG2396|consen 164 LRGLRFNPDSP--KLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKF 241 (568)
T ss_pred HHHhhcCCCCh--HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHH
Confidence 88764333333 2332222111 0 0 00 00 000111110000000111110 00000 0000000
Q ss_pred CChHH-HHHHHHHHHhCCCCCCCHHHHHHHHH----HHHh---------------cCChHHHHHHHHHHHhcCCCCCCHH
Q 009977 216 GTLES-AFEVLKEMKKSQMSYPNLITYSTLID----GLCK---------------NGRFREAIELFEEMVSKDQILPDAL 275 (521)
Q Consensus 216 g~~~~-A~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---------------~g~~~~A~~~~~~~~~~~~~~~~~~ 275 (521)
....+ -..+.+.+...++ .++.+|..+.. .+.+ .-+-+....+|++.... .|+..
T Consensus 242 d~~kel~k~i~d~~~~~~~--~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~---l~t~s 316 (568)
T KOG2396|consen 242 DFLKELQKNIIDDLQSKAP--DNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT---LPTES 316 (568)
T ss_pred HHHHHHHHHHHHHHhccCC--CCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH---hhHHH
Confidence 11111 1123333444344 34444433321 1111 11223345677776543 45666
Q ss_pred HHHHHHHHHHhCC------CHHHHHHHHHHHHHcC-C-CCCcchHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHH
Q 009977 276 TYNVLIDGFCRGG------KVDRAKKIMEFMKNNG-C-NPNVFNYTTLMNGFCKEGKLQE-AKEVFDEMKNFLLKPDTIG 346 (521)
Q Consensus 276 ~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~ 346 (521)
.|+..|..|...- .+.....+++...+.+ . +.....|..+...+...+...+ |+.+..+. ...+...
T Consensus 317 m~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~ 392 (568)
T KOG2396|consen 317 MWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKM 392 (568)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHH
Confidence 6777776665432 3344455555554432 1 2234455555555555554333 33333232 3345666
Q ss_pred HHHHHHHHHhc-CCHHHH-HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC-HHH-HH-HHHHHHHHCCCccCHHHH-HHH
Q 009977 347 YTTLINCFCRA-GRVDEA-LELLKEMKERGCKADIVTFNIILGGLCREGK-IEE-AL-GMLEKLWYDGIYLNKASY-RIV 420 (521)
Q Consensus 347 ~~~l~~~~~~~-~~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~-a~-~~~~~~~~~~~~~~~~~~-~~l 420 (521)
|..-+....+. .+++-- ..++......-..+....|+... .|+ ... .+ .++..+... ..|+..++ +.+
T Consensus 393 ~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~ 466 (568)
T KOG2396|consen 393 WQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKY 466 (568)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHH
Confidence 65555544422 122211 11222222221222233333333 122 111 11 122222222 23344443 467
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHc
Q 009977 421 LNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC---KAGMAEDAAIALFGLV-EMGFKPESDSWALLVELICR 496 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 496 (521)
+..+.+.|-..+|...+..+... .+|+...|..++..-. .+| ...+..+|+.+. ..| -|+..|...+..-..
T Consensus 467 l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 467 LDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELP 542 (568)
T ss_pred HHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhcc
Confidence 77888899999999999999854 3447777777775432 233 777888999887 566 677788877776678
Q ss_pred cCcHHHHHHHHHHHHH
Q 009977 497 GRKLLFAFELLDELVI 512 (521)
Q Consensus 497 ~g~~~~A~~~~~~m~~ 512 (521)
.|..+.+-.++.++++
T Consensus 543 ~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 543 LGRPENCGQIYWRAMK 558 (568)
T ss_pred CCCcccccHHHHHHHH
Confidence 8988888887777665
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.00 E-value=3.2 Score=37.19 Aligned_cols=49 Identities=14% Similarity=0.030 Sum_probs=21.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCC-cHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKP-NTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
.-|.+.|.+++|++.|...+. +.| +++++..-..+|.+...+..|..=.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 344444555555555544332 222 4444444444455444444444333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.95 E-value=36 Score=36.49 Aligned_cols=131 Identities=24% Similarity=0.220 Sum_probs=73.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc
Q 009977 351 INCFCRAGRVDEALELLKEMKERGCKADIVT----FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ 426 (521)
Q Consensus 351 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (521)
+..--+.|-+.+|+.++. |+... |.+....+...+.+++|.-.|+..-+. .-.+.+|..
T Consensus 915 ~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~ 977 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKE 977 (1265)
T ss_pred HHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHH
Confidence 333345555566555543 34444 444444455567777777766654321 234567778
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHH
Q 009977 427 KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFEL 506 (521)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 506 (521)
+|++.+|+.+..++... -.--..+-..|..-+...+++-+|.++...... .|. ..+..|++...|++|.++
T Consensus 978 ~~dWr~~l~~a~ql~~~-~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 978 CGDWREALSLAAQLSEG-KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEWEEALRV 1048 (1265)
T ss_pred hccHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHHHHHHHH
Confidence 88888888888776421 111111124577777888888888887765543 122 223344555555665554
Q ss_pred H
Q 009977 507 L 507 (521)
Q Consensus 507 ~ 507 (521)
.
T Consensus 1049 a 1049 (1265)
T KOG1920|consen 1049 A 1049 (1265)
T ss_pred H
Confidence 3
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.46 Score=28.25 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=12.9
Q ss_pred HHHHHHccCcHHHHHHHHHHHHHc
Q 009977 490 LVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 490 l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
|+.+|...|+.+.|.+++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.68 E-value=1.3 Score=25.74 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 240 TYSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 240 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
+++.+...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555556666666666666655554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.68 E-value=11 Score=30.37 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=12.8
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHH
Q 009977 298 EFMKNNGCNPNVFNYTTLMNGFCKEGKLQ 326 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 326 (521)
+.+.+.+++++...+..+++.+.+.|++.
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33334444444444444444444444433
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.40 E-value=32 Score=35.19 Aligned_cols=117 Identities=10% Similarity=-0.004 Sum_probs=73.0
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCc--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHH
Q 009977 357 AGRVDEALELLKEMKERG-CKAD--IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKA 433 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 433 (521)
..+.+.|..++....... ..+. ...+..+....+..+...++...+....... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 456788999998875443 2211 1233444444444433557777776654332 2444445555555588999988
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 434 IELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 434 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
...+..|-.. ..-...-..-+.+++...|+.++|...|+++.
T Consensus 332 ~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888887543 22344555567888788899999999998874
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.39 E-value=5.3 Score=28.47 Aligned_cols=44 Identities=11% Similarity=-0.046 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 433 AIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 433 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
+.+-++.+....+.|++.+..+.+++|.+..++..|.++++-..
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444445555555555555555555555555554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.32 E-value=32 Score=35.15 Aligned_cols=315 Identities=11% Similarity=0.015 Sum_probs=140.1
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHH
Q 009977 70 KCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERV 149 (521)
Q Consensus 70 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 149 (521)
.+.|++..+.++-..+ ....+ ..-..|..+...+. ...+++....+++-. +.|............+.+.+++...
T Consensus 44 ~~~g~~~~~~~~~~~l-~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~~ 118 (644)
T PRK11619 44 WDNRQMDVVEQLMPTL-KDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRGL 118 (644)
T ss_pred HHCCCHHHHHHHHHhc-cCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHHH
Confidence 4567777777766655 22211 11122333322211 223444444444432 2233333444455556667777777
Q ss_pred HHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHH--HHHHH
Q 009977 150 LEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAF--EVLKE 227 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~ 227 (521)
++.+.. .+.+...-.....+....|+.++|....+.+=... ...+..++.++..+.+.|.+.... +=++.
T Consensus 119 ~~~~~~------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~ 190 (644)
T PRK11619 119 LAFSPE------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQQSGKQDPLAYLERIRL 190 (644)
T ss_pred HHhcCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 662211 13344444556667777788776665555442221 223446677777777666654332 22222
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CCCCCCHHHHHHHHHHHH--hCCCHHHHHHHH
Q 009977 228 MKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK--------DQILPDALTYNVLIDGFC--RGGKVDRAKKIM 297 (521)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~ 297 (521)
+...+ +...-..+...+ ..+.....+.+..+... ..++++...-..++.++. ...+.+.|..++
T Consensus 191 al~~~----~~~lA~~l~~~l--~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~ 264 (644)
T PRK11619 191 AMKAG----NTGLVTYLAKQL--PADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMI 264 (644)
T ss_pred HHHCC----CHHHHHHHHHhc--ChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHH
Confidence 23222 222222222222 11111111112111111 011222211121222221 234556677777
Q ss_pred HHHHHcC-CCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009977 298 EFMKNNG-CNPNV--FNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERG 374 (521)
Q Consensus 298 ~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 374 (521)
....... ..+.. .+...++......+...+|...++...... .+......-+..-...++++.+...+..|....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~ 342 (644)
T PRK11619 265 PSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA 342 (644)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh
Confidence 6654432 11111 112223222222222445555555443221 233333333444446777777777777765432
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 375 CKADIVTFNIILGGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 406 (521)
- -...-.--+..++...|+.++|..+|+.+.
T Consensus 343 ~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 343 K-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred c-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2 133444556666666788888887777764
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.31 E-value=12 Score=33.31 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 325 LQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEM 370 (521)
Q Consensus 325 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 370 (521)
.++++.++..-.+.|+-||..+++.++..+.+.+++.+|..+.-.|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555544444433
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.28 E-value=0.78 Score=28.64 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009977 454 ELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWAL 489 (521)
Q Consensus 454 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 489 (521)
.+.-++.+.|++++|.+..+.+++. +|+..-...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHH
Confidence 4555677777777777777777765 566544333
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.26 E-value=3.4 Score=33.50 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHH---HHHHHHhcCCHHHHHHHHHHHH
Q 009977 360 VDEALELLKEMKERGCKADIVTFNI---ILGGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~ 406 (521)
++.|.+..+.....++. |...++. .+.-+++.....++.+++++..
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAi 55 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAI 55 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 34455555544443322 3333332 2222333344445555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.14 E-value=5.6 Score=33.02 Aligned_cols=20 Identities=15% Similarity=-0.090 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 009977 448 HYATSNELLVRLCKAGMAED 467 (521)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~ 467 (521)
|+..+.+|+..+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 33334444444444444333
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.97 E-value=18 Score=31.81 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 009977 206 NILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
..++..+.+.|++.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 45667777777777777655543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.78 E-value=2.5 Score=30.02 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 464 MAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
+.-+..+-++.+...++-|++....+.+++|.|.+++.-|.++|+-+..+-+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~ 73 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG 73 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 4456778888888888999999999999999999999999999998886654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.77 E-value=18 Score=31.52 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=67.5
Q ss_pred CcHHHHHHHHHhhccccCCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHhhhc--CCCC--CcHHHHHHHHHHHHhcCC
Q 009977 144 SLHERVLEMFHKIHPITREKPSL--KAISTCLNLLIESNQVDLAQNFLKYSNQH--LRLK--PNTCIFNILIKHHCKRGT 217 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~~l~~~~~~~g~ 217 (521)
.++++|+.-|.++.++.+.+.++ .++..++....+.+++++....+++++.- ..+. -+..+.|.++..-....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 47888888888887766554443 45666788888888888888777776420 0111 123345555555555555
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITY----STLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
.+--..+++.-.+.-....+...| +.+...|...|++.+..++++++..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 555444444332211111232223 3455555555555555555555543
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.74 E-value=35 Score=34.95 Aligned_cols=397 Identities=12% Similarity=0.043 Sum_probs=190.9
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHH---HHccCcHHHHHHHHHhhccccCCCCCHhHH
Q 009977 93 HNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKH---FSNCSLHERVLEMFHKIHPITREKPSLKAI 169 (521)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (521)
-+...+..||..+.+.|++++...--..|.+.- +..+..|..-+.- ....+...++..+|++... +.-+...|
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~---dy~~v~iw 186 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG---DYNSVPIW 186 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc---ccccchHH
Confidence 355667788889999999988887777777653 5566666654443 2344778888888888753 23333344
Q ss_pred HHHHHHH-------HhcCCHHHHHHHHHHhhhcCCCCCc-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 009977 170 STCLNLL-------IESNQVDLAQNFLKYSNQHLRLKPN-----TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN 237 (521)
Q Consensus 170 ~~ll~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 237 (521)
..++.-+ ...++++....+|++++...|..-+ ...|.-+=..|...-..++...+|..-...+.. .+
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D-~~ 265 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLD-ED 265 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccch-hh
Confidence 4333322 3346777888888888766554433 122222223344444446666666665554421 22
Q ss_pred HHHH--HHHHHH---HHhcCChHHHHH-------HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 009977 238 LITY--STLIDG---LCKNGRFREAIE-------LFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGC 305 (521)
Q Consensus 238 ~~~~--~~l~~~---~~~~g~~~~A~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (521)
...| ...-.. .....+++.|.+ .+++.... .++-...|..+++.+...|++.....+++++...-
T Consensus 266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~--~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~- 342 (881)
T KOG0128|consen 266 TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK--EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEM- 342 (881)
T ss_pred hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhc-
Confidence 1111 111100 011222333332 23333222 23344567777777888888877777777776542
Q ss_pred CCCcchHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCC-------
Q 009977 306 NPNVFNYTTLMNGFC--KEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE-ALELLKEMKERGC------- 375 (521)
Q Consensus 306 ~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~------- 375 (521)
..+...|..-. .|. ..+-.+.+..++....+. +.-...+|.--+-++.+.+.... -...|......++
T Consensus 343 ~~~~~~wi~y~-~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~ 420 (881)
T KOG0128|consen 343 VLDRALWIGYG-VYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYL 420 (881)
T ss_pred cccHHHHhhhh-hhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 22222221100 000 011111122222222211 11112223222223333222111 1111222111111
Q ss_pred --------CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHCCCC
Q 009977 376 --------KADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS-CQKGELEKAIELLRLMLCRGFL 446 (521)
Q Consensus 376 --------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~ 446 (521)
..+...|..+-. .+..|...|.........+...+........ .-.++.+.+..+|+.....|..
T Consensus 421 ~~rr~~~~~~~s~~~s~lr~------~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~ 494 (881)
T KOG0128|consen 421 AYRRRCTNIIDSQDYSSLRA------AFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG 494 (881)
T ss_pred HHHHhhcccchhhhHHHHHH------HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc
Confidence 111111211111 2344555554443332222222222233322 3468899999999988855432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCcHHHHHH
Q 009977 447 PHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES--DSWALLVELICRGRKLLFAFE 505 (521)
Q Consensus 447 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~ 505 (521)
--...|...++.-...|+...+..+++.+......|+. .++..+...-...|.++.+..
T Consensus 495 ~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~ 555 (881)
T KOG0128|consen 495 SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDL 555 (881)
T ss_pred hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhh
Confidence 22225555666666778888888888887766555542 344444444445666665443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.70 E-value=26 Score=33.34 Aligned_cols=91 Identities=4% Similarity=0.004 Sum_probs=52.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
.......|+++.+.+.+..... -+.....+...+++...+.|++++|...-.-|....+. +...........-..|
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie--~~ei~~iaa~sa~~l~ 405 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE--DEEVLTVAAGSADALQ 405 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC--ChhheeeecccHHHHh
Confidence 3445566777777766665532 12233446666677777777777777777777665553 3333333233333455
Q ss_pred ChHHHHHHHHHHHhc
Q 009977 253 RFREAIELFEEMVSK 267 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~ 267 (521)
-++++...|+++...
T Consensus 406 ~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 406 LFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHHhcc
Confidence 666777777666543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.70 E-value=11 Score=33.63 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=55.5
Q ss_pred CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHH
Q 009977 127 KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITR--EKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCI 204 (521)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 204 (521)
+....+...++..-....+.++++..+-++..... ..++. +...+++.+. .-+.++++.++..=+ .+|+-||-.+
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npI-qYGiF~dqf~ 137 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPI-QYGIFPDQFT 137 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcc-hhccccchhh
Confidence 33333444455555555677777776666542100 01111 1112222222 234456665555443 3577777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQ 232 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 232 (521)
++.+++.+.+.+++.+|..+...|....
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777766665443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.15 E-value=13 Score=31.02 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=9.6
Q ss_pred CcchHHHHHHHHHhcCCHHHH
Q 009977 308 NVFNYTTLMNGFCKEGKLQEA 328 (521)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A 328 (521)
|+..+..|+..|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=86.66 E-value=10 Score=33.19 Aligned_cols=88 Identities=13% Similarity=0.069 Sum_probs=49.7
Q ss_pred HHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHH--
Q 009977 136 LMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHC-- 213 (521)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 213 (521)
=|.+++..+++.+++...-+..+ ...+--+.+...+|-.|.+.++...+.++-...++..+.. +..-|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq-~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq-~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQ-VPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQ-SLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhc-CcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccC-CchhhHHHHHHHHHH
Confidence 45566677777777765544432 2334445566666777777777777666666555432211 1222544444443
Q ss_pred ---hcCChHHHHHHH
Q 009977 214 ---KRGTLESAFEVL 225 (521)
Q Consensus 214 ---~~g~~~~A~~~~ 225 (521)
=.|.+++|.++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 367777776665
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.58 E-value=10 Score=27.47 Aligned_cols=75 Identities=9% Similarity=0.081 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 009977 417 YRIVLNFSCQKGEL--EKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE-MGFKPESDSWALLVEL 493 (521)
Q Consensus 417 ~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 493 (521)
|..--..|....+. =+..+-++.+....+.|++.+..+.+++|.+..++..|.++++-... .| +....|..+++-
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 33333344443433 36667777777778889999999999999999999999999988774 33 223367766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.28 E-value=42 Score=34.26 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=38.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCcchHHHHHHHHHh--
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG-CNPNVFNYTTLMNGFCK-- 321 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 321 (521)
...+.-.|+++.|++++-+- .....|.+++...+..|.-.+-.+... ..+.... -.+...-+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34456688888888888762 123455665555554432222111111 2222111 01122456677777765
Q ss_pred -cCCHHHHHHHHHHHHh
Q 009977 322 -EGKLQEAKEVFDEMKN 337 (521)
Q Consensus 322 -~~~~~~A~~~~~~~~~ 337 (521)
..+..+|.+++--+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4567778887776654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.07 E-value=43 Score=34.17 Aligned_cols=149 Identities=13% Similarity=0.156 Sum_probs=95.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKP---NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (521)
++-+.+.+.+++|+...+... |..| -...+..++..+...|++++|-...-.|.. .+..-|...+..+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFA 434 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhc
Confidence 456677889999998887653 4444 244778889999999999999998888875 56777877777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH------------------HHcCCCCCcch
Q 009977 250 KNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFM------------------KNNGCNPNVFN 311 (521)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------------~~~~~~~~~~~ 311 (521)
..++......++ ..+....+...|..++..+.. .+...-.++.... .+. ..+...
T Consensus 435 e~~~l~~Ia~~l----Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L 507 (846)
T KOG2066|consen 435 ELDQLTDIAPYL----PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTAL 507 (846)
T ss_pred cccccchhhccC----CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhH
Confidence 777655433322 222223456677777777766 2222211111110 110 112233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 312 YTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
...|+..|...+++..|..++-...
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhcc
Confidence 4457888888899999988887654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.99 E-value=1.1 Score=22.92 Aligned_cols=21 Identities=19% Similarity=-0.053 Sum_probs=11.7
Q ss_pred HHHHHHHHccCcHHHHHHHHH
Q 009977 488 ALLVELICRGRKLLFAFELLD 508 (521)
Q Consensus 488 ~~l~~~~~~~g~~~~A~~~~~ 508 (521)
..+..++...|+.++|.++++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555666666655554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.66 E-value=1.9 Score=22.60 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=17.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHcCc
Q 009977 486 SWALLVELICRGRKLLFAFELLDELVIKES 515 (521)
Q Consensus 486 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 515 (521)
.+..+...+...|++++|...+++.++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555666666666666666655443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.35 E-value=36 Score=32.61 Aligned_cols=373 Identities=13% Similarity=0.045 Sum_probs=196.0
Q ss_pred ChHHHHHH-HHhcCChHHHHHHHHHhhhCCCCCCC-----HHHHHHHHHHHHhcC-CchHHHHHHHHhhhc--cCCc-CH
Q 009977 61 SHGAAISL-IKCEKEPQCALEIFNTVSEQKGFNHN-----NATYATILDKLARYK-KFEAVDAVLRQMTYE--TCKF-HE 130 (521)
Q Consensus 61 ~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--~~~~-~~ 130 (521)
++-.+... +...++.+.|..-++++.....--|+ -.+++.|...+.... .+..+..++++.++. ++|. +-
T Consensus 48 t~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsc 127 (629)
T KOG2300|consen 48 THLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSC 127 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhH
Confidence 34445544 34567888888888776432211122 245667777777666 888999999988765 3221 12
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHH------HHHHHhcCCHH---HHHHHHHHhhhcCCCCCc
Q 009977 131 GIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTC------LNLLIESNQVD---LAQNFLKYSNQHLRLKPN 201 (521)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l------l~~~~~~~~~~---~a~~~~~~~~~~~~~~~~ 201 (521)
.....++..+.-..++..|.+++.--.. ...+-...|..+ ...+....+.. .+.....++.+ ...+|
T Consensus 128 kllfQLaql~~idkD~~sA~elLavga~--sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~--n~~sd 203 (629)
T KOG2300|consen 128 KLLFQLAQLHIIDKDFPSALELLAVGAE--SADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQ--NISSD 203 (629)
T ss_pred HHHHHHHHHHhhhccchhHHHHHhcccc--ccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh--ccCCC
Confidence 2344677888888999999998653221 112222222222 22233334444 44444445544 34444
Q ss_pred HH--------HHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC-----------CCCH--HHH-----------HHHHH
Q 009977 202 TC--------IFNILIKHHCKRGTLESAFEVLKEMKKS---QMS-----------YPNL--ITY-----------STLID 246 (521)
Q Consensus 202 ~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-----------~~~~--~~~-----------~~l~~ 246 (521)
.. ..+.-+..|.-.|+...+...++++.+. +.. .|.. ..| .....
T Consensus 204 k~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~ 283 (629)
T KOG2300|consen 204 KTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVI 283 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHh
Confidence 32 1222344566688887777777765432 110 0111 111 11111
Q ss_pred HHHhcCChHHHHHHHHHHHh-------cCCCCCCHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCc----
Q 009977 247 GLCKNGRFREAIELFEEMVS-------KDQILPDAL-----TYNVLIDGFCRGGKVDRAKKIMEFMKNNGC-NPNV---- 309 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---- 309 (521)
.-...|-+++|.++-++++. .++..|-.. +...++-+-.-.|++.+|++-...|.+--. .|.+
T Consensus 284 hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 284 HSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 11234555555555554433 221111111 112222222347899999998888876321 2221
Q ss_pred ----chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 009977 310 ----FNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGY--TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFN 383 (521)
Q Consensus 310 ----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (521)
.....++..+...|.++.|+.-|....+..-..|...+ ..+...|.+.|+.+.-.++++.+--. +..++.
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~----nt~s~s 439 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPL----NTNSLS 439 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCC----CCCcch
Confidence 11223344455678999999999887764433443333 33555688888877766666554322 222211
Q ss_pred H--------HHH--HHHhcCCHHHHHHHHHHHHHCCC-----ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 384 I--------ILG--GLCREGKIEEALGMLEKLWYDGI-----YLNKASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 384 ~--------l~~--~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
. ++. -....+++.+|...+++-.+..- +........|...+...|+..++.+...-..
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence 1 111 12357899999998888766421 1112223334445566788888887776554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.29 E-value=7.8 Score=32.53 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=26.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEE 263 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 263 (521)
+..+.+.+++++++...++-.+..| .|...-..++..++-.|+|++|..-++-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakP--tda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKP--TDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCC--ccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 3444445555555555555444444 3444444455555555555555544443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=85.22 E-value=2.8 Score=22.88 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 240 TYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 240 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555566666666666655544
|
... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.15 E-value=19 Score=34.25 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=84.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
|.-....|++-.|-+-+...++.....|+. ...........|+++.+...+......-. ....+...+++...+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~--s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIG--TTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhc--CCchHHHHHHHhhhchh
Confidence 444445688777766555555543334443 33344556778999999988876654322 45567788889999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 253 RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
++++|...-+-|+... --+...........-..|-++++...|+++....
T Consensus 372 r~~~a~s~a~~~l~~e--ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNE--IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccc--cCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999998887643 2333433333334455678899999999887654
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.14 E-value=2.4 Score=40.92 Aligned_cols=93 Identities=17% Similarity=0.096 Sum_probs=73.3
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLL 501 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 501 (521)
....|+...|...+..+.. ..| .......|.....+.|..-+|-.++.+.+... ...+-++..+..++....+.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhH
Confidence 3457999999999988873 345 33344557788888888889999998888765 455567778889999999999
Q ss_pred HHHHHHHHHHHcCccCcc
Q 009977 502 FAFELLDELVIKESGTIQ 519 (521)
Q Consensus 502 ~A~~~~~~m~~~~~~~~~ 519 (521)
.|++.|++++++.+.+..
T Consensus 694 ~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPE 711 (886)
T ss_pred HHHHHHHHHHhcCCCChh
Confidence 999999999999887653
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.80 E-value=19 Score=31.93 Aligned_cols=79 Identities=9% Similarity=-0.048 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
..+.+-.+|.+.++++.|+.+.+.+....| .+..-+.--+-.|.+.|.+..|..-++..++..+-.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P--~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDP--EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 345566677888888888888888887776 466666667777888888888888888777765555555555444444
Q ss_pred H
Q 009977 284 F 284 (521)
Q Consensus 284 ~ 284 (521)
.
T Consensus 261 l 261 (269)
T PRK10941 261 I 261 (269)
T ss_pred H
Confidence 3
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=84.17 E-value=16 Score=31.22 Aligned_cols=28 Identities=18% Similarity=0.030 Sum_probs=15.8
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 489 LLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 489 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
.+++...+.|++++|.++|.+++.....
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3445555566666666666666655443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.65 E-value=2 Score=23.23 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=9.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 009977 209 IKHHCKRGTLESAFEVLKEMKK 230 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~ 230 (521)
+.++.+.|++++|.+.|+++.+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3334444444444444444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.55 E-value=32 Score=30.56 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH
Q 009977 75 PQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQ 120 (521)
Q Consensus 75 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 120 (521)
..+|+++|--+..+.|- ..+-..++..+-...+..+|...+..
T Consensus 149 s~KA~ELFayLv~hkgk---~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHKGK---EVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhcCC---cccHhHHHHHHccccchhhHHHHHHH
Confidence 46788998888766542 33334566666666666666665544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.49 E-value=27 Score=29.83 Aligned_cols=88 Identities=11% Similarity=0.075 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHhhhcCCCCC-c---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHH------HHHHHH
Q 009977 180 NQVDLAQNFLKYSNQHLRLKP-N---TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYST------LIDGLC 249 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------l~~~~~ 249 (521)
.+++.|+..|++.-+=+.... + ...+......-...+++.+|+++|+++...... .+..-|.. -+-++.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~-n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD-NNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHhHHHHHHHHHHHHhH
Confidence 455555555555432111111 1 123344455556678888888888887766543 23222321 111222
Q ss_pred hcCChHHHHHHHHHHHhcC
Q 009977 250 KNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 250 ~~g~~~~A~~~~~~~~~~~ 268 (521)
-..+.-.+...+++..+.+
T Consensus 207 ~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELD 225 (288)
T ss_pred hcccHHHHHHHHHHHHhcC
Confidence 3345445555555555443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.99 E-value=26 Score=33.50 Aligned_cols=106 Identities=15% Similarity=0.019 Sum_probs=61.7
Q ss_pred HHHhCCCHHHHHHHHHHHHH---cCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC----
Q 009977 283 GFCRGGKVDRAKKIMEFMKN---NGCNPN-----VFNYTTLMNGFCKEGKLQEAKEVFDEMKN-------FLLKPD---- 343 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~---- 343 (521)
.+.-.|++.+|.+++...-- .|...+ -..++.|.-.+.+.|.+..+..+|.+..+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556788888777654321 121111 12235666666777777776666665542 343332
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 009977 344 -------TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLC 390 (521)
Q Consensus 344 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (521)
..+|| ..-.|...|++-.|.+.|.+....- .-++..|..+..+|.
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 12233 2334667788888888887776542 236778888887775
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.47 E-value=4.3 Score=27.67 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcH-HHHHHHHHHHHhcCChHHHHH
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNT-CIFNILIKHHCKRGTLESAFE 223 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 223 (521)
..++.++|+..++.+++...-+++- .++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444432222221 244455555555555555443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=81.71 E-value=40 Score=30.51 Aligned_cols=132 Identities=17% Similarity=0.244 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCH
Q 009977 290 VDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK--EG----KLQEAKEVFDEMKNFLLK---PDTIGYTTLINCFCRAGRV 360 (521)
Q Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 360 (521)
+++...+++.+.+.|+.-+..+|.+....... .. ....|..+|+.|++...- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777888888877776555443332222 22 245688888888875422 334444444433 33333
Q ss_pred ----HHHHHHHHHHHHcCCCCcHh--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 009977 361 ----DEALELLKEMKERGCKADIV--TFNIILGGLCREGK--IEEALGMLEKLWYDGIYLNKASYRIVLNF 423 (521)
Q Consensus 361 ----~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (521)
+.+..+|+.+.+.|...+.. ....++..+..... ...+..+++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 45566777777766554322 22222222221111 44677888888888888777777665543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.40 E-value=6.1 Score=26.97 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=25.4
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 426 QKGELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAIA 471 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~ 471 (521)
...+.++|+..|+.+++.-..| -..++..++.+++..|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666542222 223445556666666666665554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.12 E-value=25 Score=34.41 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=43.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009977 213 CKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDR 292 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 292 (521)
.-.|+...|...+.......+. ..-.....|...+.+.|-..+|-.++.+.+... ...+.++..+.+++....+.++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~-~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPL-QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhccChh-hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHH
Confidence 3355555565555554443332 122223334444445555555555555554432 2333455555555555666666
Q ss_pred HHHHHHHHHHc
Q 009977 293 AKKIMEFMKNN 303 (521)
Q Consensus 293 a~~~~~~~~~~ 303 (521)
|++.|+++.+.
T Consensus 695 a~~~~~~a~~~ 705 (886)
T KOG4507|consen 695 ALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHhc
Confidence 66666555554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.57 E-value=5.8 Score=23.60 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=7.9
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 009977 387 GGLCREGKIEEALGMLEKLW 406 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~ 406 (521)
.+|...|+.+.|.++++++.
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 33333444444444443333
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=80.37 E-value=52 Score=30.89 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=47.2
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcH
Q 009977 426 QKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGM-----AEDAAIALFGLVEMGFKPESDSWALLVELICRGRKL 500 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (521)
+-.+.+.|+.++.+|++.|-+|....-..++-+...-|. ..-|...++.....|.+-....+...+-.++-.-+-
T Consensus 261 RGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~i~LAqavvyLA~aPKS 340 (436)
T COG2256 261 RGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEARIALAQAVVYLALAPKS 340 (436)
T ss_pred ccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCcc
Confidence 345677777777777777666655554444445444443 223444444445556332223333333333444444
Q ss_pred HHHHHHHHHHHH--cCccCccCC
Q 009977 501 LFAFELLDELVI--KESGTIQVP 521 (521)
Q Consensus 501 ~~A~~~~~~m~~--~~~~~~~v~ 521 (521)
..+...|+.++. +..++..||
T Consensus 341 NavY~A~~~A~~d~~~~~~~~vP 363 (436)
T COG2256 341 NAVYTAINAALADAKEGGSLEVP 363 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCC
Confidence 445555554443 233444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.4 bits (212), Expect = 8e-18
Identities = 27/204 (13%), Positives = 65/204 (31%), Gaps = 4/204 (1%)
Query: 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321
E+ + P L+ +D + +
Sbjct: 80 EDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLL 139
Query: 322 EGKLQEAKEVFDEMKNFLLK---PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKAD 378
+L A + K Y ++ + R G E + +L +K+ G D
Sbjct: 140 TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199
Query: 379 IVTFNIILGGLCREGKIEEALG-MLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELL 437
++++ L + R+ + + LE++ +G+ L ++L+ + L+ ++
Sbjct: 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259
Query: 438 RLMLCRGFLPHYATSNELLVRLCK 461
LP +++LL +
Sbjct: 260 PTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.1 bits (206), Expect = 3e-17
Identities = 30/197 (15%), Positives = 73/197 (37%), Gaps = 3/197 (1%)
Query: 144 SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLK--YSNQHLRLKPN 201
L V + H + + + + ++Q+ LA + L + + R
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELF 261
++N ++ ++G + VL +K + ++ P+L++Y+ + + + + IE
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-PDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 262 EEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321
E +S++ + AL VL+ R + K+ P N + L+
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 322 EGKLQEAKEVFDEMKNF 338
+ ++ +K
Sbjct: 284 KDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.9 bits (182), Expect = 3e-14
Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 4/202 (1%)
Query: 286 RGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI 345
R A + + + +P L+ + L + + L
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 346 GYTTLINCFCRAGRVDEALELL---KEMKERGCKADIVTFNIILGGLCREGKIEEALGML 402
C ++ A LL +++ + +N ++ G R+G +E + +L
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 403 EKLWYDGIYLNKASYRIVLNFSCQKGELEKAIE-LLRLMLCRGFLPHYATSNELLVRLCK 461
+ G+ + SY L ++ + IE L M G + LL +
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 462 AGMAEDAAIALFGLVEMGFKPE 483
A + + P
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPP 270
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.9 bits (99), Expect = 3e-04
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 8/161 (4%)
Query: 78 ALEIFNTVSEQKGFNHNNATYATILDKLARY-KKFEAVDAVLRQMTYETCKFHEGIFLNL 136
+ + V + G + +YA L + R + ++ L QM+ E K
Sbjct: 184 LVYVLFMV-KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF---- 238
Query: 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHL 196
+ VL+ HK+ P P L LL + D ++ K
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL--HLP 296
Query: 197 RLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN 237
L R + S + K+ + +
Sbjct: 297 LKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKT 337
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 2e-09
Identities = 65/402 (16%), Positives = 127/402 (31%), Gaps = 118/402 (29%)
Query: 69 IKCE-KEPQCALEIFNTVSEQKGFNHNNATYATILDKL--ARYKKFEAVDAVLRQ----- 120
IK E ++P ++ + + +N N + K +R + + + L +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRD-RLYNDNQ-----VFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 121 --------------MTYETCKFHE-------GIF-LNLMKHFSNCSLHERVLEMFHKI-H 157
+ + C ++ IF LN NC+ E VLEM K+ +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLY 207
Query: 158 PITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT 217
I S S+ + L I S Q +L + LK + N + +L +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAEL-RRLLK-----SKPYENCLL--VL-LNVQNAKA 258
Query: 218 LESAFEVLKEMKKSQMSYPNLIT--YSTLIDGLCKNGRFREAIELFEEMVSKDQILPDAL 275
AF + ++ L+T + + D L +++ ++ D++ +L
Sbjct: 259 WN-AFNL-----SCKI----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SL 306
Query: 276 TYNVLIDGFCRGGKVD----RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEV 331
L + NP E +++
Sbjct: 307 LLKYL------DCRPQDLPREVLTT---------NP-------RRLSIIAE-SIRDGLAT 343
Query: 332 FDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCR 391
+D K+ TT+I + +L +L+ + R + F
Sbjct: 344 WDNWKHVNCDK----LTTII---------ESSLNVLEPAEYRKMFDRLSVF--------P 382
Query: 392 EG-KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEK 432
I L L +W+D I + +V+N + +EK
Sbjct: 383 PSAHIPTIL--LSLIWFDVIKSDV---MVVVNKLHKYSLVEK 419
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 4e-08
Identities = 60/390 (15%), Positives = 109/390 (27%), Gaps = 130/390 (33%)
Query: 211 HHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK--- 267
HH FE + Y S D N ++ ++ + ++SK
Sbjct: 5 HHMD-------FET------GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI 51
Query: 268 DQIL--PDAL--TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE- 322
D I+ DA+ T L + + + +F+ NY LM+ E
Sbjct: 52 DHIIMSKDAVSGTL-RLFWTLLSKQE----EMVQKFV-EEVLRI---NYKFLMSPIKTEQ 102
Query: 323 --------------GKLQEAKEVFD-----------EMKNFL--LKPDT---------IG 346
+L +VF +++ L L+P G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 347 YTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI--ILGGLCREGKIEEALGMLEK 404
T + C + +V ++ F I + C E L ML+K
Sbjct: 163 KTWVALDVCLSYKVQCKMD----------------FKIFWLNLKNCNS--PETVLEMLQK 204
Query: 405 LWY----DGIYLNKASYRIVLNFSCQKGELEKAIELLR-----LML-------------- 441
L Y + + S I L + EL + ++ L+L
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 442 -CR-----------GFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWAL 489
C+ FL T++ L + D +L + +P+
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKY-LDCRPQD----- 317
Query: 490 LVELICRGRKLLFAFELLDELVIKESGTIQ 519
L + + ++ E + T
Sbjct: 318 LPREVLTTNPRRLS--IIAESIRDGLATWD 345
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 9e-05
Identities = 48/362 (13%), Positives = 100/362 (27%), Gaps = 127/362 (35%)
Query: 14 FSSF-STSSSSLP----WISPLEV--IKA------NTPK------ADPPVETSDTCVDAR 54
+ LP +P + I T D ++ ++
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 55 K----RSRFISHGAAI----SLIKCEKEPQCALEIF--NTVSEQKGFNHNNATYATILDK 104
+ R F ++ + I P L + + + +++K
Sbjct: 367 EPAEYRKMFDR--LSVFPPSAHI-----PTILLSLIWFDVIKSDVM---------VVVNK 410
Query: 105 LARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN-CSLHERVLEMFHKIHPITREK 163
L +Y V +Q T I+L L N +LH +++
Sbjct: 411 LHKYS------LVEKQPKESTISIP-SIYLELKVKLENEYALHRSIVD------------ 451
Query: 164 PSLKAISTCLNLLIESNQVDLAQNFL-KYSNQHLRLKPNTCIFNILIKHHCKRGTLESAF 222
N+ + DL +L +Y H I HH K
Sbjct: 452 --------HYNIPKTFDSDDLIPPYLDQYFYSH-------------IGHHLKNIEHPERM 490
Query: 223 EVLKEM--------KKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA 274
+ + + +K + ++++ L + + K I +
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL---QQLK---------FYKPYICDND 538
Query: 275 LTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFN--YTTLMNGFCKEGKLQEAKEVF 332
Y L++ I++F+ N+ YT L+ + + E + +F
Sbjct: 539 PKYERLVN------------AILDFLPK--IEENLICSKYTDLL----RIALMAEDEAIF 580
Query: 333 DE 334
+E
Sbjct: 581 EE 582
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 45/200 (22%), Positives = 74/200 (37%), Gaps = 24/200 (12%)
Query: 248 LCKNGRFREAIELFEEMVSKDQILPD-ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN 306
+ G F A ++ ++ PD +L + ++DR+ N
Sbjct: 9 EYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRS--AHFSTLAIKQN 63
Query: 307 PNVFN-YTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEAL 364
P + Y+ L N + + G+LQEA E + LKPD GY L AG ++ A+
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAGDMEGAV 121
Query: 365 ELLKEMKERGCKADIVTFNIILGGLCRE-GKIEEALGMLEKLW-----YDGIYLNKASYR 418
+ + D+ LG L + G++EEA K + + N
Sbjct: 122 QAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG--- 176
Query: 419 IVLNFSCQKGELEKAIELLR 438
V N +GE+ AI
Sbjct: 177 CVFN---AQGEIWLAIHHFE 193
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 60/322 (18%), Positives = 124/322 (38%), Gaps = 51/322 (15%)
Query: 174 NLLIESNQVDLAQNFLKYSNQHLRLKPN-TCIFNILIKHHCKRGTLESAFEVLKEMKKSQ 232
+ ++ + A ++ Q R +P+ T + +L H + L+ + +
Sbjct: 7 HREYQAGDFEAA---ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS---AHFSTLAI 60
Query: 233 MSYPNL-ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD-ALTYNVLIDGFCRGGKV 290
P L YS L + + G+ +EAIE + + ++ PD Y L G +
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL---RLKPDFIDGYINLAAALVAAGDM 117
Query: 291 DRAKKIMEFMKNNGCNPNVFN-YTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYT 348
+ A + ++ NP+++ + L N G+L+EAK + + +P+ + ++
Sbjct: 118 EGA--VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWS 173
Query: 349 TLINCFCRAGRVDEALELLKEMKERGCKA-----DIVTFNIILGGLCRE-GKIEEALGML 402
L F G + A+ + KA + + I LG + +E + A+
Sbjct: 174 NLGCVFNAQGEIWLAIHHFE-------KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 403 EKL-----WYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATS-NELL 456
+ + ++ N A V ++G ++ AI+ R + PH+ + L
Sbjct: 227 LRALSLSPNHAVVHGNLA---CVYY---EQGLIDLAIDTYRRAI--ELQPHFPDAYCNLA 278
Query: 457 VRLCKAGMAEDA------AIAL 472
L + G +A A+ L
Sbjct: 279 NALKEKGSVAEAEDCYNTALRL 300
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 63/403 (15%), Positives = 113/403 (28%), Gaps = 63/403 (15%)
Query: 78 ALEIFNTVSEQKGFN--HNNATYATILDKLARYKKFEAVDAVLR--QMTYETCKFHEGIF 133
A+ + +S FN L+K A K E + E
Sbjct: 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151
Query: 134 LNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNF----- 188
+ ++ + + +F S +A +N L +
Sbjct: 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211
Query: 189 -----------LKYSNQHLRLKPNTCI-FNILIKHHCKRGTLESAFEVLKEMKKSQMSYP 236
L +N+ +LK I + A E +K K+ +P
Sbjct: 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK---KAIELFP 268
Query: 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG------GKV 290
+ +Y + + E F++ + D Y+ RG
Sbjct: 269 RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY-YH-------RGQMNFILQNY 320
Query: 291 DRAKKIMEFMKNNGCNPN-VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI-GYT 348
D+A +F K +P +F Y L +E K + + +F E K P+
Sbjct: 321 DQA--GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPN 376
Query: 349 TLINCFCRAGRVDEALELLKEMKER--------GCKADIVTFNIILGGLCREGKIEEALG 400
D+AL+ E A +V +L EA
Sbjct: 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436
Query: 401 MLEK-LW----YDGIYLNKASYRIVLNFSCQKGELEKAIELLR 438
+LEK + + A Q+ ++++AI L
Sbjct: 437 LLEKASKLDPRSEQAKIGLA------QMKLQQEDIDEAITLFE 473
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 27/207 (13%)
Query: 248 LCKNGRFREAIELFEEMVSKDQILPD-ALTYNVLIDGFCRG--GKVDRAKKIME-FMKNN 303
L KN + EAIE+F ++ +K + YN C K D A+K +E +
Sbjct: 13 LFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRR--AVCYYELAKYDLAQKDIETYFSKV 67
Query: 304 GCNPNVFN-YTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIG-YTTLINCFCRAGRVD 361
+ K+G+ A + + + Y + + F G
Sbjct: 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQ--AAVDRDTTRLDMYGQIGSYFYNKGNFP 125
Query: 362 EALELLKEMKERGCKADIVTFNIILGGLCRE-GKIEEALGMLEKL------WYDGIYLNK 414
A++ +++ LG + +A K+ Y G YL +
Sbjct: 126 LAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG-YLWR 182
Query: 415 ASYRIVLNFSCQKGE----LEKAIELL 437
A + ++G EK IE+
Sbjct: 183 ARANAAQDPDTKQGLAKPYYEKLIEVC 209
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 27/229 (11%), Positives = 67/229 (29%), Gaps = 25/229 (10%)
Query: 252 GRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRA-KKIMEFMKNNGCNPNVF 310
++ ++ K P+ + + + D ++ M + N
Sbjct: 48 RKYGVVLDEI-----KPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT 102
Query: 311 NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEM 370
+ + + A + + + + R+D A + LK+M
Sbjct: 103 FLLMAASIYFYDQNPDAALRTLHQGDSLEC------MAMTVQILLKLDRLDLARKELKKM 156
Query: 371 KERGCKADIVTFNIILGGLCR-EGKIEEALGMLEKL-----WYDGIYLNKASYRIVLNFS 424
+++ A + L K+++A + +++ + +A+ +
Sbjct: 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ--- 213
Query: 425 CQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALF 473
G E A +L+ L H T L+V G +
Sbjct: 214 ---GRWEAAEGVLQEAL-DKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 40/253 (15%), Positives = 82/253 (32%), Gaps = 25/253 (9%)
Query: 174 NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKE------ 227
NL+ N +D ++ + Y + + + N+L +G E+A E L++
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 228 -MKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF-- 284
Q +L+T+ GR + +++ +
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142
Query: 285 ------CRGGKVDRAKKIMEFMKNNGCNPNVFN-YTTLMNGFCKEGKLQEAKEVFDEMKN 337
C G + +RAK F K P + L + ++ D ++
Sbjct: 143 GWTRLKCGGNQNERAKVC--FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200
Query: 338 FL-LKPDTIGY-----TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCR 391
+ L PD L E +L++E E+ V + R
Sbjct: 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK-FYRR 259
Query: 392 EGKIEEALGMLEK 404
+ + ++A+ +L+K
Sbjct: 260 KDEPDKAIELLKK 272
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 34/299 (11%), Positives = 82/299 (27%), Gaps = 64/299 (21%)
Query: 174 NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIF-----NILIKHHCKRGTLESAFEVLKEM 228
+ +QN + Q +RL P+ L K + ++++E
Sbjct: 180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA 239
Query: 229 KKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD-ALTYNVLIDGFCRG 287
+ + + + +AIEL ++ + P+ A + + G C
Sbjct: 240 LEKAPGVTD--VLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLHCQI--GCCYR 292
Query: 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIG- 346
KV + + E + A + +
Sbjct: 293 AKVFQVMNLRENGMYGKRK--------------LLELIGHAVAHLKKADE--ANDNLFRV 336
Query: 347 YTTLINCFCRAGRVDEALELLK---EMKERGCKADIVTFNIILGGLCREGKIEEALGMLE 403
+ L + A + +EA + + ++ L + ++A+
Sbjct: 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI 396
Query: 404 KLWYDGIYLNKASY---------------RIVLNFSC------------QKGELEKAIE 435
+ G+ +N+ S R+ N + ++++A E
Sbjct: 397 E----GVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 27/199 (13%), Positives = 61/199 (30%), Gaps = 21/199 (10%)
Query: 174 NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQM 233
+LL + DL + ++ + + L A + L + +
Sbjct: 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE- 302
Query: 234 SYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRA 293
+ D L RF + + + +++ D D Y + + G+ ++
Sbjct: 303 --KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV--YPLHLASLHESGEKNKL 358
Query: 294 ----KKIMEFMKNN--GCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIG 346
+++ V Y + K+ EA+ F K+ + P
Sbjct: 359 YLISNDLVDRHPEKAVTWL-AVGIY------YLCVNKISEARRYFS--KSSTMDPQFGPA 409
Query: 347 YTTLINCFCRAGRVDEALE 365
+ + F G D+A+
Sbjct: 410 WIGFAHSFAIEGEHDQAIS 428
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 9e-04
Identities = 32/285 (11%), Positives = 81/285 (28%), Gaps = 38/285 (13%)
Query: 174 NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQM 233
+ + A+ L + + ++ + K + A +L E +
Sbjct: 125 QVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRK 181
Query: 234 SYPNLITYSTLIDG--------------LCKNGRFREAIELFEEMVSKDQILPDALTYNV 279
N G F A E ++E + D +A ++
Sbjct: 182 DEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA--FDQ 239
Query: 280 LIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFN----YTTLMNGFCKEGKLQEAKEVFDEM 335
L+ + +++ + + Y +N E +L+ A++ +
Sbjct: 240 LVSNHLLTAD-EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298
Query: 336 KNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKI 395
L+ + + R + L + ++ E ++ + + L L G+
Sbjct: 299 N--GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEK 355
Query: 396 EEALGMLEKL-----WYDGIYLNKASYRIVLNFSCQKGELEKAIE 435
+ + L +L Y + C ++ +A
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIY-----YLCV-NKISEARR 394
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 28/198 (14%), Positives = 63/198 (31%), Gaps = 37/198 (18%)
Query: 248 LCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNP 307
+ G+ +A+ F + ++ + + + + KN+ +
Sbjct: 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD-------------------KNSEISS 54
Query: 308 NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIG-YTTLINCFCRAGRVDEALEL 366
+ L + K +A + + P+ + G+ +AL +
Sbjct: 55 KLAT--ELALAYKKNRNYDKAYLFYK--ELLQKAPNNVDCLEACAEMQVCRGQEKDALRM 110
Query: 367 LKEMKERGCKADIVTFNIILGGLCRE--GKIEEALGMLEKLWYDGIYLN----KASYRIV 420
+++ + +AD + NI LG + ++ L K + A YR
Sbjct: 111 YEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYK----KLSSPTKMQYARYRDG 164
Query: 421 LNFSCQKGELEKAIELLR 438
L+ EKA L+
Sbjct: 165 LSKL-FTTRYEKARNSLQ 181
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 65/397 (16%), Positives = 121/397 (30%), Gaps = 58/397 (14%)
Query: 78 ALEIFNTVSEQKGFN--HNNATYATILDKLARYKKFEAVDAVLRQMT-----YETCKFHE 130
A+ + +S F+ L+K A E + + + +
Sbjct: 112 AMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171
Query: 131 GIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLK 190
GIF + ++ S+ + + + + S + + + D+ + L
Sbjct: 172 GIFDSHLE-VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS 230
Query: 191 YSNQHLRLKPNTCI-FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249
+ L+ N + H + L A +L+ +S +P +Y L L
Sbjct: 231 ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ---ESINLHPTPNSYIFLALTLA 287
Query: 250 KNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG------GKVDRAKKIMEFMKNN 303
+E + F++ V + P Y+ RG A +F K
Sbjct: 288 DKENSQEFFKFFQKAVDLNPEYPPTY-YH-------RGQMYFILQDYKNA--KEDFQKAQ 337
Query: 304 GCNPN-VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVD 361
NP V+ Y L K+GK E++ F+E K P T G D
Sbjct: 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFD 395
Query: 362 EALELLKEMKER---------------GCKADIVTFNIILGGLCREGKIEEALGMLEKL- 405
A++ K G + + E K A+ +L K
Sbjct: 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455
Query: 406 ----WYDGIYLNKASYRIVLNFSCQKGELEKAIELLR 438
+ + A + Q ++++AIEL
Sbjct: 456 ELDPRSEQAKIGLA---QLKL---QMEKIDEAIELFE 486
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 12/131 (9%)
Query: 248 LCKNGRFREAIELFEEMVSKDQILPD-ALTYNVLIDGFC--RGGKVDRAKKIMEFMKNNG 304
L + R+ EA + E S+D + P+ + + L G + K +A F K+
Sbjct: 115 LYEQKRYEEAYQRLLE-ASQDTLYPERSRVFENL--GLVSLQMKKPAQA--KEYFEKSLR 169
Query: 305 CNPNVFN-YTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI-GYTTLINCFCRAGRVDE 362
N N + + + KE + A++ +D I D
Sbjct: 170 LNRNQPSVALEMADLLYKEREYVPARQYYD--LFAQGGGQNARSLLLGIRLAKVFEDRDT 227
Query: 363 ALELLKEMKER 373
A ++K
Sbjct: 228 AASYGLQLKRL 238
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 29/226 (12%), Positives = 62/226 (27%), Gaps = 32/226 (14%)
Query: 192 SNQHLRLKPNTCI-FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLI-TYSTLIDGLC 249
+ L L P + T++ VL ++ P + ++ G
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLC---QAHGLTPQQVVAIASHDGGKQ 117
Query: 250 KNGRFREAIELFEEMVSKDQILPD-ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN 308
+ + + + + P+ + G V + + +G P
Sbjct: 118 ALETVQRLLPVLCQAH---GLTPEQVVAIASHDGGKQALETVQAL--LPVLCQAHGLTPE 172
Query: 309 VFNYTTLMN-GFCKE--GKLQEAKEVFDEMKNFLLKPD-TIGYTTLINCFCRAGRVDEAL 364
+ + G K+ +Q V + L P + + V L
Sbjct: 173 --QVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLL 228
Query: 365 ELLKEMKERGCKA------DIVTFNIILGGLCREGKIEEALGMLEK 404
+L C+A +V GG ++ L +L +
Sbjct: 229 PVL-------CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 267
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 8e-04
Identities = 18/140 (12%), Positives = 42/140 (30%), Gaps = 10/140 (7%)
Query: 355 CRAGRVDEALELLKEMKERGCKADIVTFNIILGGLC-REGKIEEALGMLEKL--WYDGIY 411
G +A+E L+ G +V + + + + + + ++ W D
Sbjct: 113 AAQGNYADAMEALEAAPVAGS-EHLVAW--MKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169
Query: 412 LNKASYRIVLNFSC-QKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA-EDAA 469
+ + + +A L A + + + + E AA
Sbjct: 170 --AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA 227
Query: 470 IALFGLVEMGFKPESDSWAL 489
+AL ++ + AL
Sbjct: 228 VALLEWLQTTHPEPKVAAAL 247
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.76 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.75 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.74 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.73 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.71 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.69 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.68 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.68 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.67 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.67 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.65 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.65 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.64 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.64 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.63 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.6 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.59 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.58 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.56 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.55 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.55 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.55 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.54 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.54 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.42 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.35 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.35 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.34 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.32 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.31 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.28 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.26 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.24 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.24 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.24 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.22 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.22 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.21 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.21 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.21 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.19 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.18 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.18 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.18 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.17 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.17 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.17 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.16 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.15 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.15 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.14 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.13 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.12 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.11 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.07 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.03 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.01 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.98 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.97 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.95 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.95 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.93 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.93 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.93 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.92 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.9 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.9 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.89 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.88 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.87 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.86 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.85 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.85 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.84 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.84 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.84 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.82 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.82 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.8 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.8 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.79 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.79 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.77 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.77 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.74 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.74 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.73 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.72 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.72 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.7 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.7 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.69 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.68 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.65 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.64 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.63 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.63 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.61 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.6 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.6 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.58 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.57 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.54 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.54 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.48 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.48 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.45 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.41 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.4 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.4 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.39 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.36 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.35 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.34 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.34 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.32 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.32 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.3 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.3 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.27 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.24 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.21 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.21 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.17 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.07 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.03 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.03 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.0 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.97 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.96 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.95 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.94 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.86 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.85 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.84 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.84 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.79 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.51 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.41 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.36 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.34 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.32 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.21 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.19 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.17 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.15 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.14 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.97 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.9 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.77 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.77 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.72 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.71 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.66 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.61 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.6 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.6 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.51 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.35 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.08 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.95 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.86 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.79 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.73 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.66 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.55 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.3 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.24 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.06 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.89 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.86 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.74 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.62 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.4 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.13 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.52 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.16 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.97 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.73 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.61 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.05 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.97 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.54 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.15 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.82 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.23 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.19 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.05 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.36 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.96 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.46 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.87 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.09 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.91 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.13 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.39 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.93 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=340.44 Aligned_cols=445 Identities=12% Similarity=0.034 Sum_probs=390.6
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
+++..|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+... +++..++..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 45667999999999999999999999999743 578899999999999999999999999998754 6788899999
Q ss_pred HHHHHccCcHHHHHHHHHhhcccc--------------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcH
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPIT--------------REKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNT 202 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 202 (521)
+.+|.+.|++++|+++|+++.... +...+..++..++.+|.+.|++++|..+|+++.+.. +.+.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 234 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCY 234 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhh
Confidence 999999999999999999653211 113457889999999999999999999999997642 2233
Q ss_pred HHHHHH--------------------------------------HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009977 203 CIFNIL--------------------------------------IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTL 244 (521)
Q Consensus 203 ~~~~~l--------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 244 (521)
..+..+ +..|.+.|++++|.++|+++.+. + ++..+|+.+
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~l 311 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-E--KSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-G--GCHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-C--chHHHHHHH
Confidence 343333 55667889999999999998876 2 789999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK 324 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 324 (521)
+.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc
Confidence 999999999999999999998764 4567789999999999999999999999999765 6678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 325 LQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEK 404 (521)
Q Consensus 325 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 404 (521)
+++|.++|+++.+.. ..+..+|+.++.+|.+.|++++|+++|+++.+.+.. +..+|..++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998743 235889999999999999999999999999987643 788999999999999999999999999
Q ss_pred HHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 405 LWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR----GFLPH--YATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
+.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|...++++.+.
T Consensus 467 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9987544 7889999999999999999999999999875 66787 789999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 479 GFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 479 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
+ +.+..+|..++.+|.+.|++++|.+.|+++++.+|++.
T Consensus 546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 546 S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 5 45789999999999999999999999999999988763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=319.52 Aligned_cols=430 Identities=11% Similarity=-0.005 Sum_probs=362.2
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHH
Q 009977 69 IKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHER 148 (521)
Q Consensus 69 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (521)
....+....+...|..+. .++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHH
Confidence 344556666666666542 357889999999999999999999999999865 4677889999999999999999
Q ss_pred HHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcC--------------CCCCcHHHHHHHHHHHHh
Q 009977 149 VLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHL--------------RLKPNTCIFNILIKHHCK 214 (521)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~ 214 (521)
|++.|+++.. .+++..++..++.+|.+.|++++|..+|+++.... +.+++..+|+.++.+|.+
T Consensus 136 A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 136 AKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 9999999853 36788899999999999999999999998543321 224468899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHH--------------------------------------HHHHHhcCChHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTL--------------------------------------IDGLCKNGRFRE 256 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~g~~~~ 256 (521)
.|++++|.++|+++.+.++ .+...+..+ +..|.+.|++++
T Consensus 213 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVDA--KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc--hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 9999999999999998876 344444433 445567889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 257 AIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 257 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+++++.
T Consensus 291 A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 291 AEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999764 5889999999999999999999999999999876 5688899999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHH
Q 009977 337 NFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKAS 416 (521)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 416 (521)
+.. ..+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+.. +..+
T Consensus 367 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 443 (597)
T 2xpi_A 367 DRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLP 443 (597)
T ss_dssp HHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHH
T ss_pred hhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHH
Confidence 643 346889999999999999999999999999987543 6889999999999999999999999999987543 7889
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHH
Q 009977 417 YRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM----GFKPE--SDSWALL 490 (521)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l 490 (521)
|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+. +..|+ ..+|..+
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999999642 347899999999999999999999999999875 66777 6899999
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 491 VELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 491 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
+.+|.+.|++++|.+.++++.+.+|.+.
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999877653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=245.69 Aligned_cols=377 Identities=16% Similarity=0.096 Sum_probs=218.1
Q ss_pred HhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHH
Q 009977 106 ARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLA 185 (521)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (521)
.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++.... ..+.+..++..+..++...|++++|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHH
Confidence 33444444444444444332 22333333344444444444444444444331 1233334444444444444444444
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 186 QNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
...|+++.+. .+.+..+|..++.++.+.|++++|.+.|+++.+..+ .+...+..+...+...|++++|++.|+++.
T Consensus 87 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 87 IEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP--DLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT--TCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444331 122344566666666666666666666666666554 344555666666666666666666666666
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 009977 266 SKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTI 345 (521)
Q Consensus 266 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 345 (521)
... +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...++++..... .+..
T Consensus 163 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 238 (388)
T 1w3b_A 163 ETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHH
Confidence 542 3445666666666666666666666666666654 34455666666666666677777666666655321 1356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 009977 346 GYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSC 425 (521)
Q Consensus 346 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (521)
++..+...|...|++++|+..|+++.+.++. +..+|..++..+.+.|++++|...++++.+..+ .+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence 6666666677777777777777776665433 455666677777777777777777777666532 25666667777777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009977 426 QKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGR 498 (521)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (521)
..|++++|...++++++. .| +..++..++..+.+.|++++|...++++.+.. +.+...|..+...+...|
T Consensus 317 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 777777777777777642 33 55666677777777777777777777776542 223455666655555444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-30 Score=244.96 Aligned_cols=382 Identities=14% Similarity=0.051 Sum_probs=333.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccC
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (521)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. |.+..++..++..|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 4566788999999999999987654 5567788888899999999999999999998875 678889999999999999
Q ss_pred cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 009977 145 LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEV 224 (521)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 224 (521)
++++|++.|+++... .+.+..++..+..++...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.
T Consensus 82 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999998743 3445667999999999999999999999998763 233566888899999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 225 LKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
|+++.+..+ .+..+|..++..+...|++++|+..|+++...+ +.+...+..+...+...|++++|...+++..+..
T Consensus 158 ~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 158 YLKAIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999998876 578899999999999999999999999999874 5567889999999999999999999999998875
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH
Q 009977 305 CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI 384 (521)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 384 (521)
+.+..++..++.+|...|++++|.+.|+++.+... .+..+|..+...+.+.|++++|+..|+++.+..+ .+..++..
T Consensus 234 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 310 (388)
T 1w3b_A 234 -PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNN 310 (388)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHH
Confidence 55678899999999999999999999999998532 2578899999999999999999999999998754 37889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 009977 385 ILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAG 463 (521)
Q Consensus 385 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 463 (521)
+...+...|++++|...++++.+..+ .+..++..+...+.+.|++++|...|+++++ ..| +...+..+...+...|
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999999988643 3678899999999999999999999999995 456 6777777777766655
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=243.34 Aligned_cols=184 Identities=16% Similarity=0.206 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHHHH
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK---------LQEAKEVFDEMKNFLLKPDTIGY 347 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~ 347 (521)
++.+|++|++.|++++|+++|++|.+.|+.||..+|+.|+.+|++.+. ++.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 334444444444444444444444444444444444444444433222 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC
Q 009977 348 TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK 427 (521)
Q Consensus 348 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (521)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 428 GELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 428 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
|+.++|.+++++|.+.|..|+..||+.++..|.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 555555555555555555555555555554444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=243.88 Aligned_cols=207 Identities=17% Similarity=0.169 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------H
Q 009977 291 DRAKKIMEFMKNNGCNPNV-FNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR---------V 360 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 360 (521)
..+..+.+.+.+.+....+ ..++.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|.+.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777665554 36888999999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 009977 361 DEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLM 440 (521)
Q Consensus 361 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (521)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 009977 441 LCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRG 497 (521)
Q Consensus 441 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (521)
.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||..++..+...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=227.67 Aligned_cols=409 Identities=10% Similarity=-0.059 Sum_probs=297.8
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
.|......+.+.|++++|+..|++++... |+..+|..++.++.+.|++++|...++++.+.+ |.+..++..++.+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 45667788999999999999999998764 689999999999999999999999999999886 66778999999999
Q ss_pred HccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh----------------------------
Q 009977 141 SNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYS---------------------------- 192 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---------------------------- 192 (521)
...|++++|+..|+++.... +++.......+..+........+.+.+..+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999987533 334444444444333322222222222110
Q ss_pred ------hhcCCC---------CCcHHHHHHHHHHHHh---cCChHHHHHHHHHHHh-----C--CCC-----CCCHHHHH
Q 009977 193 ------NQHLRL---------KPNTCIFNILIKHHCK---RGTLESAFEVLKEMKK-----S--QMS-----YPNLITYS 242 (521)
Q Consensus 193 ------~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~--~~~-----~~~~~~~~ 242 (521)
...... +.+...+......+.. .|++++|...|+++.+ . .+. ..+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 000000 1114455555555554 7888888888888877 3 211 02356677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 009977 243 TLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE 322 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (521)
.++..+...|++++|+..|+++.... |+...+..++.++...|++++|...++.+.+.. +.+..++..++..+...
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 78888888888888888888887763 227777888888888888888888888887764 45667788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 009977 323 GKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGML 402 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 402 (521)
|++++|...++++.+.... +...+..+...+...|++++|+..++++.+.... +..++..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888774322 4667777888888888888888888888776433 5667778888888888888888888
Q ss_pred HHHHHCCCc-cC----HHHHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 403 EKLWYDGIY-LN----KASYRIVLNFSCQ---KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFG 474 (521)
Q Consensus 403 ~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (521)
+++...... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|...+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 887764221 11 2377778888888 888888888888887542 23667777788888888888888888888
Q ss_pred HHHCCCCCCH
Q 009977 475 LVEMGFKPES 484 (521)
Q Consensus 475 ~~~~~~~~~~ 484 (521)
+.+. .|+.
T Consensus 475 a~~~--~~~~ 482 (514)
T 2gw1_A 475 SADL--ARTM 482 (514)
T ss_dssp HHHH--CSSH
T ss_pred HHHh--cccc
Confidence 8876 3544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-26 Score=225.05 Aligned_cols=404 Identities=11% Similarity=0.010 Sum_probs=220.8
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
...|..+...+.+.|++++|++.|++++... +.+...|..++.++.+.|++++|.+.++++.+.+ |.+..++..++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 3467778889999999999999999998664 5678999999999999999999999999999886 667889999999
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----CCCCcHHH---------
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHL-----RLKPNTCI--------- 204 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~--------- 204 (521)
+|...|++++|++.|+.+.. .|+. ....+..+...+....|...++.+.... ...|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL----NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHhc----CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999975531 2221 1222334555566677888888775421 11122211
Q ss_pred ---------------------HHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHh
Q 009977 205 ---------------------FNILIKHHCKR--------GTLESAFEVLKEMKKSQMSYPN-----LITYSTLIDGLCK 250 (521)
Q Consensus 205 ---------------------~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~ 250 (521)
...+...+... |++++|..+++++.+..+..++ ..++..+...+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 11111221111 2455555555555544432111 1123444444555
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 009977 251 NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (521)
.|++++|+..|+++... .|+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|..
T Consensus 256 ~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp TTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 55555555555555543 2234445555555555555555555555555443 3344455555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009977 331 VFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI 410 (521)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 410 (521)
.++++.+... .+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.....
T Consensus 332 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 5555544321 12344455555555555555555555555544322 334455555555555555555555555443211
Q ss_pred c-----cCHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 411 Y-----LNKASYRIVLNFSCQK----------GELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGL 475 (521)
Q Consensus 411 ~-----~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 475 (521)
. .....+......+... |++++|...++++.+.. +.+..++..+..++.+.|++++|...|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 0 0111122223334444 55555555555555321 123444555555555555555555555555
Q ss_pred HHC
Q 009977 476 VEM 478 (521)
Q Consensus 476 ~~~ 478 (521)
.+.
T Consensus 489 l~~ 491 (537)
T 3fp2_A 489 AIL 491 (537)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-25 Score=211.96 Aligned_cols=312 Identities=12% Similarity=0.071 Sum_probs=189.8
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
...|..++..+.+.|++++|+.+|++++... +.+..+|..++.++...|++++|...|+++.+.+ +.+..++..++.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 4456666666666666667766666665432 3456666666666666666666666666666654 344556666666
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCC-H---hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPS-L---KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCK 214 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 214 (521)
.|...|++++|++.|+++.. ..|+ . ..+..++..+. ...+..++..+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~------------------------~~~~~~~a~~~~~ 155 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSDE------------------------MQRLRSQALNAFG 155 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHHHH------------------------HHHHHHHHHHHHH
Confidence 66666666666666666642 1222 2 23333322210 0122333455677
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (521)
.|++++|...|+++.+..+ .+..++..++.+|...|++++|++.|+++.... +.+..++..++.+|...|++++|.
T Consensus 156 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 156 SGDYTAAIAFLDKILEVCV--WDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777778777777777665 466777777777777788888887777776652 455677777777777777777777
Q ss_pred HHHHHHHHcCCCCCcchHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhc
Q 009977 295 KIMEFMKNNGCNPNVFNYTTL------------MNGFCKEGKLQEAKEVFDEMKNFLLKPD-----TIGYTTLINCFCRA 357 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 357 (521)
..|+++.+.. +.+...+..+ +..+...|++++|...|+++.+. .|+ ...+..+..++.+.
T Consensus 232 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 232 SEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHC
Confidence 7777777653 3333333333 55566666666666666666553 222 23455555666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
|++++|+..++++.+..+. +..+|..++.+|...|++++|...++++.+.
T Consensus 309 g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6666666666666554322 4555666666666666666666666666554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-24 Score=209.74 Aligned_cols=329 Identities=14% Similarity=0.063 Sum_probs=213.5
Q ss_pred HHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 009977 113 AVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYS 192 (521)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 192 (521)
.+...+....... |.+...+..++..|.+.|++++|++.|+++... .+.+..++..+..++...|++++|...++++
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555443 455667777888888888888888888877532 3445667777777888888888888888877
Q ss_pred hhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH---HHHHHHHHH------------HHhcCChHHH
Q 009977 193 NQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL---ITYSTLIDG------------LCKNGRFREA 257 (521)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~g~~~~A 257 (521)
++. .+.+..++..++.+|.+.|++++|.+.|+++.+..+ .+. ..+..++.. +...|++++|
T Consensus 87 l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 87 IQL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP--SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred Hhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 653 234566777788888888888888888888777654 344 566666433 6777777777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
+..|+++.... +.+...+..++.+|.+.|++++|...|+++.+.. +.+..++..++.+|...|++++|...|+++..
T Consensus 163 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 163 IAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777653 4566677777777777777777777777777654 45566777777777777777777777777765
Q ss_pred CCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHHHHH
Q 009977 338 FLLKPDTIGYTTL------------INCFCRAGRVDEALELLKEMKERGCKAD----IVTFNIILGGLCREGKIEEALGM 401 (521)
Q Consensus 338 ~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~ 401 (521)
... .+...+..+ ...+...|++++|+..|+++.+..+. + ...+..++..+.+.|++++|...
T Consensus 240 ~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 321 124444433 56666777777777777777665322 2 23566666677777777777777
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 009977 402 LEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELL 456 (521)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~ 456 (521)
++++....+. +...|..+..+|...|++++|...++++++ +.| +...+..+.
T Consensus 318 ~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 318 CSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 7776654322 556677777777777777777777777764 345 344444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-23 Score=203.28 Aligned_cols=382 Identities=14% Similarity=0.041 Sum_probs=300.3
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
|+...|..++.++...|++++|++.|+++++.. +.+...|..++.++...|++++|...|+++...+ +.+......+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ 113 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPM 113 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHH
Confidence 456678889999999999999999999997654 5677899999999999999999999999999876 4444444444
Q ss_pred HHHHHccCcHHHHHHHHHhh--------------------------------------ccc-----cCCCCCHhHHHHHH
Q 009977 137 MKHFSNCSLHERVLEMFHKI--------------------------------------HPI-----TREKPSLKAISTCL 173 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~--------------------------------------~~~-----~~~~~~~~~~~~ll 173 (521)
+..+........+.+.+..+ ... ...+.+...+....
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (514)
T 2gw1_A 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193 (514)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 44333322222222222110 000 00011234444445
Q ss_pred HHHHh---cCCHHHHHHHHHHhhh-----cCCC-------CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH
Q 009977 174 NLLIE---SNQVDLAQNFLKYSNQ-----HLRL-------KPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL 238 (521)
Q Consensus 174 ~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 238 (521)
..+.. .|++++|...++++.+ .... +.+..++..++..+...|++++|...|+++....+ . .
T Consensus 194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~-~ 270 (514)
T 2gw1_A 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--R-V 270 (514)
T ss_dssp HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--C-H
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--c-H
Confidence 55554 8999999999999876 2111 23466889999999999999999999999998875 3 8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 009977 239 ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNG 318 (521)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (521)
..+..++..+...|++++|+..++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 347 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACL 347 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHH
Confidence 889999999999999999999999998763 5567789999999999999999999999999875 5577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHh--
Q 009977 319 FCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCK-AD----IVTFNIILGGLCR-- 391 (521)
Q Consensus 319 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~-- 391 (521)
+...|++++|...++++.+.. ..+...+..+...+...|++++|...++++.+.... ++ ...+..+...+..
T Consensus 348 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 426 (514)
T 2gw1_A 348 AYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP 426 (514)
T ss_dssp TTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999988753 235678889999999999999999999998875322 11 3388899999999
Q ss_pred -cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH
Q 009977 392 -EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYAT 451 (521)
Q Consensus 392 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 451 (521)
.|++++|...++++...... +..++..+...|...|++++|...|+++.+ +.|+...
T Consensus 427 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~ 484 (514)
T 2gw1_A 427 TVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEE 484 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHH
T ss_pred hcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHH
Confidence 99999999999999887543 678889999999999999999999999996 4565433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-22 Score=185.90 Aligned_cols=319 Identities=13% Similarity=0.044 Sum_probs=240.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009977 165 SLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTL 244 (521)
Q Consensus 165 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 244 (521)
+...+..+...+...|++++|...++.+++. .+.+..++..++..+...|++++|...|+++.+..+ .+...|..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM--DFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcchHHHHH
Confidence 4566778888899999999999999988763 345677889999999999999999999999888776 477888899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC---CCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCc
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQIL---PDALTYNVL------------IDGFCRGGKVDRAKKIMEFMKNNGCNPNV 309 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 309 (521)
+..+...|++++|+..|+++.+.. + .+...+..+ ...+...|++++|.+.++.+.+.. +.+.
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 154 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDA 154 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCch
Confidence 999999999999999999998652 3 344455544 567788888888888888888765 5567
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHH------
Q 009977 310 FNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFN------ 383 (521)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------ 383 (521)
.++..++.++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+..+. +...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~ 232 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH
Confidence 788888888888888888888888887753 235778888888888888888888888888876433 333332
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHHHHHCCCccCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 009977 384 ------IILGGLCREGKIEEALGMLEKLWYDGIYLNK----ASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATS 452 (521)
Q Consensus 384 ------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~ 452 (521)
.++..+...|++++|...++++...... +. ..+..+...+...|++++|...++++++. .| +..++
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 309 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHH
Confidence 2255677888888888888888775433 22 22445667778888888888888888754 34 67777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 009977 453 NELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICR 496 (521)
Q Consensus 453 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (521)
..+...+...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 888888888888888888888887763 2234555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-21 Score=178.75 Aligned_cols=317 Identities=13% Similarity=0.027 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHH
Q 009977 130 EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILI 209 (521)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 209 (521)
...+..+...+...|++++|++.|+++... .+.+..++..+..++...|++++|...++.+.+. .+.+...+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHH
Confidence 345666777777777777777777777532 2344566677777777777777777777776643 233556777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCHHH
Q 009977 210 KHHCKRGTLESAFEVLKEMKKSQMSY-PNLITYSTL------------IDGLCKNGRFREAIELFEEMVSKDQILPDALT 276 (521)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 276 (521)
..+...|++++|...|+++.+..+.. .+...+..+ +..+...|++++|++.++++.+.. +.+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 156 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAEL 156 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHH
Confidence 77777777777777777777654300 133344433 466677777777777777776653 455666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTT------- 349 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------- 349 (521)
+..+...+...|++++|...++.+.+.. +.+..++..++..+...|++++|...++++.+.... +...+..
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence 7777777777777777777777777654 456667777777777777777777777777653221 2333322
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHH
Q 009977 350 -----LINCFCRAGRVDEALELLKEMKERGCKADI----VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIV 420 (521)
Q Consensus 350 -----l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 420 (521)
+...+...|++++|...++++.+.... +. ..+..+...+...|++++|...++++.+..+. +..++..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 244566777777777777777765433 22 22444666777777777777777777765322 56667777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 009977 421 LNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVR 458 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 458 (521)
...+...|++++|...|+++++ +.| +...+..+..+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence 7777777777777777777774 345 34444444433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-22 Score=196.40 Aligned_cols=404 Identities=13% Similarity=0.044 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHH
Q 009977 95 NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLN 174 (521)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 174 (521)
...|..+...+.+.|++++|...|+++.+.+ |.+..++..++.+|...|++++|++.|+++... .+.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHH
Confidence 4567888999999999999999999999886 667889999999999999999999999998743 3556778899999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCCHHH---------
Q 009977 175 LLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMS-----YPNLIT--------- 240 (521)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~--------- 240 (521)
++...|++++|...++.+. ..|+. ....+..+...+...+|...++++....+. .|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS----LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHh----cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 9999999999999997442 22332 222344555666678888888888654210 122111
Q ss_pred ---------------------HHHHHHHHHhc--------CChHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHh
Q 009977 241 ---------------------YSTLIDGLCKN--------GRFREAIELFEEMVSKDQILPD-----ALTYNVLIDGFCR 286 (521)
Q Consensus 241 ---------------------~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~ 286 (521)
...+...+... |++++|+.+|+++.+..+..++ ..++..+...+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 11111111111 3567777777777654311111 2245555666667
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 287 GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
.|++++|...++.+.+.. |+..++..++..+...|++++|...++++.+... .+..++..+...+...|++++|+..
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 777777777777777653 4466666777777777777777777777665432 2466677777777777777777777
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--
Q 009977 367 LKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG-- 444 (521)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 444 (521)
++++.+..+. +...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++++..
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 7777765433 4556677777777777777777777777665432 45566677777777777777777777766431
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CcHHHHHHHH
Q 009977 445 ---FLPHYATSNELLVRLCKA----------GMAEDAAIALFGLVEMGFKPESDSWALLVELICRG----RKLLFAFELL 507 (521)
Q Consensus 445 ---~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~ 507 (521)
.......+......+... |++++|...++++.+. .|+ .......+... |++++|.+.|
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~---~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPR---SEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 011222233445556666 7777777777777654 232 22222222233 6777777777
Q ss_pred HHHHHcCccC
Q 009977 508 DELVIKESGT 517 (521)
Q Consensus 508 ~~m~~~~~~~ 517 (521)
+++++..+..
T Consensus 486 ~~al~~~~~~ 495 (537)
T 3fp2_A 486 EDSAILARTM 495 (537)
T ss_dssp HHHHHHC--C
T ss_pred HHHHHhCCCc
Confidence 7777765543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-19 Score=173.80 Aligned_cols=364 Identities=13% Similarity=0.014 Sum_probs=286.0
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHc----cCcHHHH
Q 009977 78 ALEIFNTVSEQKGFNHNNATYATILDKLAR----YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSN----CSLHERV 149 (521)
Q Consensus 78 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 149 (521)
++..+...... .+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 35555555332 367777778888877 788888888888887764 45677788888887 7888888
Q ss_pred HHHHHhhccccCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh----cCChHHH
Q 009977 150 LEMFHKIHPITREKPSLKAISTCLNLLIE----SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCK----RGTLESA 221 (521)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 221 (521)
++.|++... ..+..++..+...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|
T Consensus 99 ~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 99 VIWYKKAAL----KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 888888753 2356677777777777 78888999888888653 356778888888877 7889999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHH
Q 009977 222 FEVLKEMKKSQMSYPNLITYSTLIDGLCK----NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR----GGKVDRA 293 (521)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 293 (521)
.+.|++..+. .+...+..+...|.. .+++++|+++|++..+.+ +...+..+...|.. .+++++|
T Consensus 171 ~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 171 REWYSKAAEQ----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999988875 366778888888887 888999999999887652 46677788888876 7889999
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHH
Q 009977 294 KKIMEFMKNNGCNPNVFNYTTLMNGFCK----EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRA-----GRVDEAL 364 (521)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~ 364 (521)
..+|++..+.| +...+..+..+|.. .++.++|...|++..+.+ +...+..+...|... +++++|+
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999888764 45577778888877 889999999999887643 566777788888777 8999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----CCCHHHHHHHH
Q 009977 365 ELLKEMKERGCKADIVTFNIILGGLCREG---KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ----KGELEKAIELL 437 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 437 (521)
..|++..+.+ +...+..+...|...| +.++|.++|++..+.+ ++..+..+...|.. .+++++|...|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999988875 4567777888887766 7889999999888763 56778888888887 78999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 009977 438 RLMLCRGFLPHYATSNELLVRLCK----AGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 438 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 479 (521)
+++.+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9988764 56777788888887 789999999999988775
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-19 Score=177.94 Aligned_cols=414 Identities=9% Similarity=0.048 Sum_probs=266.5
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHH
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIST 171 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (521)
|.|...|..++. +.+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|.++|++... ..|+...|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---KVLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TCCCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCChHHHHH
Confidence 345556666665 345566666666666666543 44555666666666666666666666666642 2344444444
Q ss_pred HHHHH-HhcCCHHHHHH----HHHHhhhcCCCCC-cHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCC
Q 009977 172 CLNLL-IESNQVDLAQN----FLKYSNQHLRLKP-NTCIFNILIKHHCK---------RGTLESAFEVLKEMKKSQMSYP 236 (521)
Q Consensus 172 ll~~~-~~~~~~~~a~~----~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~ 236 (521)
.+... ...|+.+.|.+ +|+.++...|..| +...|...+....+ .|+++.|..+|++..+. +...
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~ 163 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMIN 163 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhh
Confidence 44322 23344444333 5555544334333 34456555555443 56667777777776652 2111
Q ss_pred CHHHHHHHHHHH-------------HhcCChHHHHHHHHHH------HhcC--CCCCC--------HHHHHHHHHHHHhC
Q 009977 237 NLITYSTLIDGL-------------CKNGRFREAIELFEEM------VSKD--QILPD--------ALTYNVLIDGFCRG 287 (521)
Q Consensus 237 ~~~~~~~l~~~~-------------~~~g~~~~A~~~~~~~------~~~~--~~~~~--------~~~~~~l~~~~~~~ 287 (521)
....|....... ...+++..|..++.++ .+.. .++|+ ...|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 123333222110 1234566777666652 2110 12443 23455554433221
Q ss_pred ----CCH----HHHHHHHHHHHHcCCCCCcchHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHH
Q 009977 288 ----GKV----DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK-------EGKLQ-------EAKEVFDEMKNFLLKPDTI 345 (521)
Q Consensus 288 ----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~ 345 (521)
++. ..+..+|++++... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 232 47778898888764 5677888888888875 68876 8999999988621233588
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH-
Q 009977 346 GYTTLINCFCRAGRVDEALELLKEMKERGCKAD-IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNF- 423 (521)
Q Consensus 346 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 423 (521)
.|..++..+.+.|++++|..+|+++.+..+. + ...|..++..+.+.|++++|..+|++..+.... +...|...+..
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~ 400 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence 8999999999999999999999999986432 3 257888888888999999999999999876322 33333332222
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCc
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMG-FKPE--SDSWALLVELICRGRK 499 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~ 499 (521)
+...|+.++|..+|+.+++. .| +...+..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 33589999999999999864 45 68888999999999999999999999998763 2222 3478888888888999
Q ss_pred HHHHHHHHHHHHHcCcc
Q 009977 500 LLFAFELLDELVIKESG 516 (521)
Q Consensus 500 ~~~A~~~~~~m~~~~~~ 516 (521)
.+.+..+++++.+..|.
T Consensus 479 ~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 479 LASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHCch
Confidence 99999999999887664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-18 Score=167.90 Aligned_cols=364 Identities=14% Similarity=0.068 Sum_probs=308.9
Q ss_pred HHHHHHHhhhccCCcCHHHHHHHHHHHHc----cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh----cCCHHHH
Q 009977 114 VDAVLRQMTYETCKFHEGIFLNLMKHFSN----CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE----SNQVDLA 185 (521)
Q Consensus 114 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a 185 (521)
+...++...+.| +......+...|.. .+++++|++.|++..+ ..+..++..+...|.. .+++++|
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE----QGYTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 345555555543 66788888888887 8999999999999864 2467788888899998 8999999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 009977 186 QNFLKYSNQHLRLKPNTCIFNILIKHHCK----RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK----NGRFREA 257 (521)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 257 (521)
...|++..+. .+...+..|...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|
T Consensus 99 ~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 99 VIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999998753 367788889999988 889999999999998864 56778888888887 8899999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHH
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK----EGKLQEAK 329 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 329 (521)
+++|++..+.+ +...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|.
T Consensus 171 ~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 171 REWYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998763 67888999999988 899999999999999865 56678888888886 89999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-----CCHHHHHH
Q 009977 330 EVFDEMKNFLLKPDTIGYTTLINCFCR----AGRVDEALELLKEMKERGCKADIVTFNIILGGLCRE-----GKIEEALG 400 (521)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~ 400 (521)
..|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|... +++++|..
T Consensus 244 ~~~~~a~~~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 244 VLFSQSAEQ---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHTT---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 999999875 356777788888887 899999999999998775 566788888888887 89999999
Q ss_pred HHHHHHHCCCccCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 009977 401 MLEKLWYDGIYLNKASYRIVLNFSCQKG---ELEKAIELLRLMLCRGFLPHYATSNELLVRLCK----AGMAEDAAIALF 473 (521)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 473 (521)
++++..+.+ +...+..+...|...| ++++|+++|++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999875 4567777888787766 7899999999999763 67788889999988 899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHcC
Q 009977 474 GLVEMGFKPESDSWALLVELICR----GRKLLFAFELLDELVIKE 514 (521)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 514 (521)
+..+.+ +...+..+...|.. .+++++|..+|++..+.+
T Consensus 392 ~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 392 KAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999864 57788889999988 899999999999999987
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=174.52 Aligned_cols=246 Identities=11% Similarity=0.000 Sum_probs=114.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG-RFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
+..++..+...|++++|...++++.+..+ .+...|..++..+...| ++++|++.|+++.... +.+...+..+...
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~ 134 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLYP--SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHS 134 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHH
Confidence 33334444444444444444444444333 23344444444444444 4444444444444331 2233344444444
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEA 363 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 363 (521)
+...|++++|...++++.+.. +.+...+..++..|...|++++|...++++.+.. ..+...+..+...+...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence 444444444544444444432 2233344444444555555555555555444422 11344444555555555555555
Q ss_pred HHHHHHHHHcC--------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHH
Q 009977 364 LELLKEMKERG--------CKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 364 ~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (521)
...++++.+.. ...+..++..+...+...|++++|...++++.+.... +...+..+...+...|++++|..
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHH
Confidence 55555544321 0112345555555555555555555555555544322 34455555555555555555555
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHH
Q 009977 436 LLRLMLCRGFLP-HYATSNELLVRL 459 (521)
Q Consensus 436 ~~~~~~~~~~~p-~~~~~~~l~~~~ 459 (521)
.++++.+ +.| +...+..+..++
T Consensus 292 ~~~~al~--~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 292 YFHTALG--LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHTTTT--TCSCCHHHHHHHHHHH
T ss_pred HHHHHHc--cCCCchHHHHHHHHHH
Confidence 5555553 233 444444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-20 Score=172.37 Aligned_cols=295 Identities=10% Similarity=0.002 Sum_probs=248.9
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH
Q 009977 198 LKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTY 277 (521)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 277 (521)
.+.+...+..++..+...|++++|.++|+++.+..+ .+...+..++.++...|++++|..+++++.+.. +.+...+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 93 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSW 93 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHH
Confidence 445566788889999999999999999999998876 466677788899999999999999999999864 5567889
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009977 278 NVLIDGFCRGG-KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356 (521)
Q Consensus 278 ~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (521)
..+...+...| ++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.... +...+..+...|..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 99999999999 9999999999999875 556788999999999999999999999999875322 45677778999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CccCHHHHHHHHHHHHcCC
Q 009977 357 AGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDG--------IYLNKASYRIVLNFSCQKG 428 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 428 (521)
.|++++|...++++.+..+. +...+..++..+...|++++|...++++.... ......++..+...+...|
T Consensus 172 ~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999999987644 67889999999999999999999999988641 1234578899999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCcHH
Q 009977 429 ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELI-CRGRKLL 501 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 501 (521)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999642 3377888999999999999999999999988764 34567888888887 4566644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-21 Score=177.88 Aligned_cols=309 Identities=11% Similarity=-0.049 Sum_probs=179.0
Q ss_pred HhcCCHHHHHH-HHHHhhhcCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009977 177 IESNQVDLAQN-FLKYSNQHLRLKP--NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR 253 (521)
Q Consensus 177 ~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (521)
...|++++|.. .+++........| +...+..++..+.+.|++++|...|+++.+..+ .+..+|..++.++...|+
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcC
Confidence 34467777777 6665543211112 234567778888888888888888888887765 567778888888888888
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 009977 254 FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFD 333 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 333 (521)
+++|++.|+++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh------
Confidence 888888888887763 5567778888888888888888888888887764 2233222211000 00
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc
Q 009977 334 EMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA-DIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYL 412 (521)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 412 (521)
. ..+ ...+..+...+ ..|++++|+..++++.+..+.. +..++..++..|...|++++|...++++....+.
T Consensus 178 -~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~- 249 (368)
T 1fch_A 178 -G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN- 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 0 000 00111122222 5566666666666665543221 3455666666666666666666666666554322
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKP---------- 482 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------- 482 (521)
+...+..+...+...|++++|+..++++++.. +.+..++..+..++.+.|++++|...++++.+.....
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 45566666666666666666666666666431 2245566666666666666666666666665431100
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 483 ESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
...+|..++.++...|++++|..++++.++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 145666677777777777777666654443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=176.77 Aligned_cols=326 Identities=14% Similarity=0.019 Sum_probs=185.8
Q ss_pred CCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHH-HHHhhccccCCCC--CHhHHHHHHHHHHhcCCHHHH
Q 009977 109 KKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLE-MFHKIHPITREKP--SLKAISTCLNLLIESNQVDLA 185 (521)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a 185 (521)
+.++.+...++.+...+. . .+...|++++|++ .|++........| +...+..+...+...|++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 83 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDA--E---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHcCCc--h---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence 344555555555554431 1 2344578888988 8887665444333 345677888899999999999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 186 QNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
...++++++. .+.+..++..++.++...|++++|...|+++.+..+ .+..++..++..+...|++++|++.++++.
T Consensus 84 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 84 VLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP--DNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998763 345678899999999999999999999999988876 578899999999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 009977 266 SKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP-DT 344 (521)
Q Consensus 266 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 344 (521)
...+ .+...+..+... .. .. .+ ...+..+...+ ..|++++|...++++.+..... +.
T Consensus 160 ~~~~--~~~~~~~~~~~~-------~~-------~~----~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 160 RYTP--AYAHLVTPAEEG-------AG-------GA----GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp HTST--TTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred HhCc--CcHHHHHHHHHH-------hh-------hh----cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccH
Confidence 7642 222222111000 00 00 00 00111122222 5556666666666555432111 35
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS 424 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (521)
.++..+...|...|++++|+..++++.+..+. +..++..++..+...|++++|...++++....+. +...+..+..+|
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~ 295 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 55556666666666666666666666554322 4455666666666666666666666666554322 455566666666
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 425 CQKGELEKAIELLRLMLCRGFLP------------HYATSNELLVRLCKAGMAEDAAIALFGL 475 (521)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~~~p------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 475 (521)
...|++++|...|+++++. .| ...++..+..++...|++++|..++++.
T Consensus 296 ~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 6666666666666666542 11 1456666677777777777766665543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-18 Score=168.08 Aligned_cols=409 Identities=10% Similarity=0.043 Sum_probs=301.0
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHH
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLM 137 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (521)
+...|..++. +.+.|++++|..+|++++.. +|.+...|..++..+.+.|++++|..+|++.+... |+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 4557888888 47789999999999999765 36788899999999999999999999999999874 4777777777
Q ss_pred HHH-HccCcHHHHHH----HHHhhccccCC-CCCHhHHHHHHHHHHh---------cCCHHHHHHHHHHhhhcCCCCCcH
Q 009977 138 KHF-SNCSLHERVLE----MFHKIHPITRE-KPSLKAISTCLNLLIE---------SNQVDLAQNFLKYSNQHLRLKPNT 202 (521)
Q Consensus 138 ~~~-~~~g~~~~a~~----~~~~~~~~~~~-~~~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~ 202 (521)
... ...|+.++|.+ +|++.....+. .++...|...+..... .|+++.|..+|+++++. ...+..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHH
Confidence 533 45577666554 77766433232 3456677777776654 68999999999999752 111112
Q ss_pred HHHHHHHHHH-------------HhcCChHHHHHHHHHH------HhCCC--CCCC--------HHHHHHHHHHHHhc--
Q 009977 203 CIFNILIKHH-------------CKRGTLESAFEVLKEM------KKSQM--SYPN--------LITYSTLIDGLCKN-- 251 (521)
Q Consensus 203 ~~~~~l~~~~-------------~~~g~~~~A~~~~~~~------~~~~~--~~~~--------~~~~~~l~~~~~~~-- 251 (521)
..|....... .+.++++.|..++.++ .+... ..|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3444333221 1345677888777763 22211 0122 34566555433322
Q ss_pred --CCh----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------CCCHH-------HHHHHHHHHHHcCCCCCcch
Q 009977 252 --GRF----REAIELFEEMVSKDQILPDALTYNVLIDGFCR-------GGKVD-------RAKKIMEFMKNNGCNPNVFN 311 (521)
Q Consensus 252 --g~~----~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~ 311 (521)
++. +++..+|++++... +.+...|..++..+.+ .|+++ +|..++++.++.-.+.+...
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 232 47888999998863 5678888888888875 78877 89999999987323556888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH-
Q 009977 312 YTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD--TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGG- 388 (521)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 388 (521)
|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|..+|++..+.... +...|...+..
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHH
Confidence 999999999999999999999999984 443 358999999999999999999999999876332 33333332222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCH
Q 009977 389 LCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG-FLP--HYATSNELLVRLCKAGMA 465 (521)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~ 465 (521)
+...|+.++|..+|++..+..+. +...|..++..+.+.|+.++|..+|++++... ..| ....|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999999886432 67889999999999999999999999999753 233 345788888888899999
Q ss_pred HHHHHHHHHHHHC
Q 009977 466 EDAAIALFGLVEM 478 (521)
Q Consensus 466 ~~a~~~~~~~~~~ 478 (521)
+.+..++.++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-18 Score=169.39 Aligned_cols=391 Identities=13% Similarity=-0.061 Sum_probs=228.4
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhc--------cCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCC-
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYE--------TCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITRE- 162 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 162 (521)
+.....|+.+..++...|++++|++.|++..+. ..+....+|..+..+|...|++++|+..+++.......
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 444567888999999999999999999887542 11233457778888888889999998888876432111
Q ss_pred -----CCCHhHHHHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHH---HHhcCChHHHHHHHHHHHhCC
Q 009977 163 -----KPSLKAISTCLNLLIE--SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKH---HCKRGTLESAFEVLKEMKKSQ 232 (521)
Q Consensus 163 -----~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~ 232 (521)
.....++.....++.. .+++++|...|+++++. .+.++..+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1123344444444433 34567777777776642 12234444444433 334566666777777766665
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009977 233 MSYPNLITYSTLIDGLCK----NGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN 308 (521)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (521)
+ .+..++..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|...++++.+.. +.+
T Consensus 206 p--~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 280 (472)
T 4g1t_A 206 P--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNN 280 (472)
T ss_dssp S--SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred C--cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCh
Confidence 5 455555555544443 345667777777766553 4455666677777777777777777777776653 344
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 009977 309 VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGG 388 (521)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (521)
..++..+..+|...+....+.. ...........+.+++|...++...+..+. +..++..+...
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~ 343 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHH
Confidence 4555555555432111100000 000000111223467888888888877543 56778889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCccCHH--HHHHHHH-HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 389 LCREGKIEEALGMLEKLWYDGIYLNKA--SYRIVLN-FSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMA 465 (521)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 465 (521)
|...|++++|...|+++......+... .+..+.. .....|++++|+..|+++++ +.|+....... .
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~ 412 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------K 412 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------H
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------H
Confidence 999999999999999998875443221 2233332 34578999999999999985 45654332222 2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 466 EDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
..+..++++.++.. +.+..+|..++.+|...|++++|.+.|+++++.++...
T Consensus 413 ~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 413 DKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 34455566665543 45668999999999999999999999999999876654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-17 Score=169.79 Aligned_cols=378 Identities=13% Similarity=0.202 Sum_probs=289.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHH
Q 009977 63 GAAISLIKCEKEPQCALEIFNTVSEQKG-FNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFS 141 (521)
Q Consensus 63 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (521)
...+..|...|.+.+|+++++++..... |..+...-+.++.+..+. +..+..++.++..... ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHH
Confidence 3466678889999999999999864432 445566677777776666 4566666665554221 234778888
Q ss_pred ccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHH
Q 009977 142 NCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESA 221 (521)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 221 (521)
..|.+++|..+|++.. -...+...+ +...+++++|.++.+++ -++.+|..++.++...|++++|
T Consensus 1061 ~lglyEEAf~IYkKa~------~~~~A~~VL---ie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD------VNTSAVQVL---IEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred hCCCHHHHHHHHHHcC------CHHHHHHHH---HHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999863 112222222 22778999999998865 2467999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 222 FEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
.+.|.+. .|...|..++.++.+.|++++|+++|....+.. ++....+.++.+|++.++++....+.
T Consensus 1125 IdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1125 IDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 9999653 577788999999999999999999999887653 33333445888999999988644432
Q ss_pred HcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhH
Q 009977 302 NNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVT 381 (521)
Q Consensus 302 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 381 (521)
+ .++...+..++..|...|++++|..+|..+ ..|..++..|.+.|++++|++.+++.. +..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~a 1252 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRT 1252 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHH
Confidence 2 346667778999999999999999999985 378999999999999999999998762 6789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 009977 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLC 460 (521)
Q Consensus 382 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 460 (521)
|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+ ++.| +...|..+..+++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhHhHHHHHHHHHHH
Confidence 999999999999999998876542 3366778899999999999999999999988 4555 6667777777776
Q ss_pred hc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCcHHHHHH
Q 009977 461 KA--GMAEDAAIALFGLVEMGFKP------ESDSWALLVELICRGRKLLFAFE 505 (521)
Q Consensus 461 ~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 505 (521)
+. ++..++.+.|..-.. ++| +...|..++..|.+.|+++.|..
T Consensus 1326 Ky~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 54 456666666654332 233 45779999999999999999983
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-19 Score=170.60 Aligned_cols=261 Identities=13% Similarity=-0.025 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
..+..++..+.+.|++++|...|+++.+..+ .+..+|..++..+...|++++|+..|+++.... +.+..++..++.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3466667777777777777777777776655 466677777777777777777777777776653 445666777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcc----------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNVF----------NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PDTIGYTTLI 351 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 351 (521)
+|...|++++|...++++.+.. +.+.. .+..+...+...|++++|...++++.+.... .+..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 7777777777777777776643 11122 2223456666666777777777666654221 1456666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHH
Q 009977 352 NCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELE 431 (521)
Q Consensus 352 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (521)
..|...|++++|+..|+++.+..+. +..+|..++.+|...|++++|...++++.+..+. +..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 6666666666666666666665432 4556666666666666666666666666654322 3555666666666666666
Q ss_pred HHHHHHHHHHHCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 432 KAIELLRLMLCRGFLP-------------HYATSNELLVRLCKAGMAEDAAIAL 472 (521)
Q Consensus 432 ~a~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~ 472 (521)
+|...|+++++. .| +..++..+..++...|+.+.+..+.
T Consensus 299 ~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 299 EAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 666666666532 11 2344555555555555555555444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=168.79 Aligned_cols=277 Identities=12% Similarity=-0.001 Sum_probs=148.6
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHH
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLM 137 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (521)
+...|..+...+.+.|++++|++.|++++... +.+..+|..++.++...|++++|...|+++.+.. +.+..++..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34457777777888888888888888776543 4567777788888888888888888888877765 45567777777
Q ss_pred HHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC
Q 009977 138 KHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT 217 (521)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 217 (521)
..|...|++++|++.|+++....+. +...+..+ ......+..+...+...|+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPK--YKYLVKNK--------------------------KGSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHH--HHCC---------------------------------------------CCHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCcc--chHHHhhh--------------------------ccchHHHHHHHHHHhhhhh
Confidence 7788888888888877776532111 01111111 0011122333444555555
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009977 218 LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIM 297 (521)
Q Consensus 218 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 297 (521)
+++|...|+++.+..+...+..+|..++..+...|++++|++.|+++.+.. +.+..++..+..+|...|++++|+..|
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAY 270 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555444321244455555555555555555555555554432 334445555555555555555555555
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 298 EFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-----------PDTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
+++.+.. +.+..++..++.+|...|++++|...|+++.+.... .+...|..+..++...|+.+.+..+
T Consensus 271 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 271 TRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 5555442 333444555555555555555555555544432100 0134555555666666666655554
Q ss_pred HH
Q 009977 367 LK 368 (521)
Q Consensus 367 ~~ 368 (521)
..
T Consensus 350 ~~ 351 (365)
T 4eqf_A 350 NL 351 (365)
T ss_dssp HT
T ss_pred HH
Confidence 44
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-18 Score=160.10 Aligned_cols=280 Identities=11% Similarity=-0.070 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..++..+...|++++|..+|+++.+..+ .+...|..++.++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 98 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVS 98 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHH
Confidence 455666667777777777777777766655 466667777777777777777777777776652 4456667777777
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLIN--CFCRAGRVD 361 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~ 361 (521)
+...|++++|.+.++++.+.. +.+...+..+.... |+......+.. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 777777777777777777653 22333332221000 00000011101 133444455
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 362 EALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
+|...++++.+.... +...+..++..+...|++++|...++++...... +...+..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555544444322 3444445555555555555555555555443221 34445555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 009977 442 CRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKP-----------ESDSWALLVELICRGRKLLFAFELLDEL 510 (521)
Q Consensus 442 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 510 (521)
+.. +.+..++..+...+...|++++|...++++.+..... +...+..+..++.+.|++++|...+++.
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 321 1244455555555555555555555555555432110 2345555666666666666666665554
Q ss_pred HHc
Q 009977 511 VIK 513 (521)
Q Consensus 511 ~~~ 513 (521)
++.
T Consensus 313 l~~ 315 (327)
T 3cv0_A 313 VEP 315 (327)
T ss_dssp SHH
T ss_pred HHh
Confidence 443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-18 Score=164.11 Aligned_cols=385 Identities=10% Similarity=-0.094 Sum_probs=241.0
Q ss_pred CCCChHHHHHHHHhcCChHHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhcc-----
Q 009977 58 RFISHGAAISLIKCEKEPQCALEIFNTVSEQ-------KGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYET----- 125 (521)
Q Consensus 58 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 125 (521)
....||.+..++...|++++|++.|+++++. ..-+....+|+.+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556899999999999999999999998542 1123456789999999999999999999999886531
Q ss_pred --CCcCHHHHHHHHHHHHc--cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHH---HHhcCCHHHHHHHHHHhhhcCCC
Q 009977 126 --CKFHEGIFLNLMKHFSN--CSLHERVLEMFHKIHPITREKPSLKAISTCLNL---LIESNQVDLAQNFLKYSNQHLRL 198 (521)
Q Consensus 126 --~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 198 (521)
......++.....++.. .+++++|++.|++.....+ .++..+..+..+ +...++.++|++.++++++. .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p--~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP--KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--N 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--C
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--C
Confidence 11234566666655554 4689999999999976433 334455444444 44567888999999988753 2
Q ss_pred CCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCH
Q 009977 199 KPNTCIFNILIKHHCK----RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDA 274 (521)
Q Consensus 199 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 274 (521)
+.+..++..+...+.. .|++++|.+.+++.....+ .+..++..++..+...|++++|+..++++.+.. +.+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~ 281 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP--GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNA 281 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChH
Confidence 3456677666655554 5678899999999998876 678889999999999999999999999998863 5567
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009977 275 LTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCF 354 (521)
Q Consensus 275 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (521)
.++..+..+|...+... .... .. .........+.++.|...++...+... .+...+..+...|
T Consensus 282 ~~~~~lg~~y~~~~~~~---------~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQV---------MNLR-EN------GMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---------hhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHH
Confidence 77877777664321111 0000 00 001111112235666777766665322 2345566677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHh--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHH
Q 009977 355 CRAGRVDEALELLKEMKERGCKADIV--TFNIILG-GLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELE 431 (521)
Q Consensus 355 ~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (521)
...|++++|+..|++..+....+... .+..+.. .+...|++++|+..+++..+... +..... +...
T Consensus 345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~ 413 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKD 413 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHH
T ss_pred HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHH
Confidence 77777777777777777654332211 1222222 23456777888888777776532 222111 1123
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 432 KAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 432 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 479 (521)
.+..+++..++.. +.+..++..+..+|...|++++|+..|++.++.+
T Consensus 414 ~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 414 KLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444555555321 2366778888888888888888888888887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-19 Score=164.17 Aligned_cols=250 Identities=11% Similarity=-0.056 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMN 317 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (521)
...+..++..+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 3445667777777888888888888777653 4466677777777777777777777777777654 445666667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH--HHHhcCCH
Q 009977 318 GFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILG--GLCREGKI 395 (521)
Q Consensus 318 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~ 395 (521)
.+...|++++|...++++.+.... +...+..+... .|+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 777777777777777776653211 11111111000 011111122212 36778899
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 396 EEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGL 475 (521)
Q Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 475 (521)
++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999887544 77889999999999999999999999998642 336788999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 476 VEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
.+.. +.+...+..++.++.+.|++++|.+.++++++..+.
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 8764 345788999999999999999999999999987765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-19 Score=160.96 Aligned_cols=380 Identities=10% Similarity=0.064 Sum_probs=162.7
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHH
Q 009977 69 IKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHER 148 (521)
Q Consensus 69 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (521)
+.+.|+.++|.++++++ . ++.+|..++.++.+.|++++|++.|.+. ++..+|..++..+...|++++
T Consensus 13 l~~~~~ld~A~~fae~~-~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-N------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-C------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHH
Confidence 34567788999998887 1 2348889999999999999999988652 455688888888888999999
Q ss_pred HHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 149 VLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
|+..++...+ ..+++.+...++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|...|..+
T Consensus 80 Ai~yl~~ark---~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 80 LVKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHH---hCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9997776643 24456677788888999999988887763 266678999999999999999999999865
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009977 229 KKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN 308 (521)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (521)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...
T Consensus 149 ----------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ 206 (449)
T 1b89_A 149 ----------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 206 (449)
T ss_dssp ----------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTC
T ss_pred ----------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhC
Confidence 25888999999999999999999887 15788999999999999999985554432 233
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------cHh
Q 009977 309 VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRA--GRVDEALELLKEMKERGCKA------DIV 380 (521)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~------~~~ 380 (521)
+.-...++..|.+.|.+++|..+++...... ......|+.+..+|++- ++..+.++.|..- .+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHH
Confidence 3445568888999999999999998887643 33477777777777653 3344444444321 11111 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDG-----------IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHY 449 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 449 (521)
.|..+...|...++++.|....-.-.... ...+...|-..+..|. +....++.-+-..+...+++
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~-- 359 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH-- 359 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH--
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc--
Confidence 78888888888899888876432221110 0113344444444443 11111222222221111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHH
Q 009977 450 ATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELL 507 (521)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 507 (521)
...+..+.+.|.+.-+..++..+... .+..+-.++-+.|....+++.-++.+
T Consensus 360 ---~r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 360 ---TRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp ---HHHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 12444555666666666666555543 23344445556667777766544433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-17 Score=150.59 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCH
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGEL 430 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (521)
|++++|+.+|+++.+..+ .+...++.+..++.+.|++++|...++++....+. +..++..++..+...|+.
T Consensus 180 ~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKP 250 (291)
T ss_dssp THHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCC
Confidence 344444444444433321 13333444444444444444444444443333221 333333333333334433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=150.41 Aligned_cols=222 Identities=17% Similarity=0.138 Sum_probs=88.7
Q ss_pred HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh
Q 009977 135 NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCK 214 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 214 (521)
.+.++|...|+++.|+..++.. .+|+..++..+...+...++.++|.+.++.+......+.+...+..+..++..
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 3444444444444444433221 22333334444444444444444444444443220012233344444444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHH-H--HHHHHHHHHhCCCHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDAL-T--YNVLIDGFCRGGKVD 291 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~ 291 (521)
.|++++|++.+++ + .+...+..++..+.+.|++++|++.|+++.+.. |+.. . ....+..+...|+++
T Consensus 114 ~g~~~~Al~~l~~-----~--~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-----G--DSLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp TTCHHHHHHHHTT-----C--CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHH
T ss_pred CCCHHHHHHHHhC-----C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHH
Confidence 4444444444443 1 334444444444444444444444444444331 1111 0 011112222234444
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 009977 292 RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE-ALELLKEM 370 (521)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~ 370 (521)
+|..+|+++.+.. +.+...++.++.++.+.|++++|+..|+++.+... .+..++..++..+...|+.++ +.++++++
T Consensus 184 eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 184 DAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4444444444432 33344444444444444444444444444443211 123344444444444444432 23444444
Q ss_pred HHc
Q 009977 371 KER 373 (521)
Q Consensus 371 ~~~ 373 (521)
.+.
T Consensus 262 ~~~ 264 (291)
T 3mkr_A 262 KDA 264 (291)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-15 Score=152.92 Aligned_cols=315 Identities=12% Similarity=0.096 Sum_probs=161.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccC
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (521)
+...+...|.+++|..+|++.. . .....+.++. ..+++++|.++.++.. ++.+|..+.+++...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-V-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-C-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 3444555566666666666541 1 1222222222 4455666666555431 2445666666666666
Q ss_pred cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 009977 145 LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEV 224 (521)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 224 (521)
++++|++.|.+. .+...|..++.++.+.|++++|.+++....+. .+++...+.++.+|.+.+++++...+
T Consensus 1120 ~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHH
Confidence 666666666443 23445555666666666666666666655432 12222233355666666665543222
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 225 LKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
. . .++...|..++..|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.
T Consensus 1190 I----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1190 I----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred H----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 1 1 134445555666666666666666666553 24566666666666666666666544
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH
Q 009977 305 CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI 384 (521)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 384 (521)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... .-+...|+-
T Consensus 1248 --~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1248 --NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred --CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 233556666666666666666655444322 234445556666666666666666665555433 113334444
Q ss_pred HHHHHHhc--CCHHHHHHHHHHHHHCCC----ccCHHHHHHHHHHHHcCCCHHHHH
Q 009977 385 ILGGLCRE--GKIEEALGMLEKLWYDGI----YLNKASYRIVLNFSCQKGELEKAI 434 (521)
Q Consensus 385 l~~~~~~~--g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 434 (521)
+...|++. ++..++.++|..-..... --+...|.-++-.|.+.|+++.|.
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 44444443 233344444432221100 013445666666666666666665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=153.24 Aligned_cols=283 Identities=12% Similarity=0.106 Sum_probs=135.2
Q ss_pred hcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 009977 107 RYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQ 186 (521)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 186 (521)
+.|+.++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. ++..+|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 5688999999999983 2359999999999999999999999653 46668999999999999999999
Q ss_pred HHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 187 NFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 82 KYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 988877642 4557789999999999999999998885 167779999999999999999999999976
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 009977 267 KDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIG 346 (521)
Q Consensus 267 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 346 (521)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhh
Confidence 25899999999999999999999988 36789999999999999999996655542 234444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCcc------CHHHHHH
Q 009977 347 YTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD-GIYL------NKASYRI 419 (521)
Q Consensus 347 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~ 419 (521)
...++..|.+.|.+++|+.+++...... +-....|+.+.-.|++- +.+...+.++..... +++| +...|..
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 5578899999999999999999988765 34677888888888765 334444444333222 3332 4567889
Q ss_pred HHHHHHcCCCHHHHHHH
Q 009977 420 VLNFSCQKGELEKAIEL 436 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~ 436 (521)
+.-.|.+.++++.|...
T Consensus 288 ~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhchHHHHHHH
Confidence 99999999999988873
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-17 Score=154.05 Aligned_cols=376 Identities=11% Similarity=0.016 Sum_probs=199.5
Q ss_pred HHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH---HHHHHHHHhhccccCCCCCHhHHHHHHHHHH
Q 009977 101 ILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH---ERVLEMFHKIHPITREKPSLKAISTCLNLLI 177 (521)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (521)
+...+.+.|++++|.++|++..+.| +..++..+...|...|+. ++|++.|++... . ++..+..+...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----~-~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----T-SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----C-CHHHHHHHHHHHH
Confidence 3344445555555555555555443 122333444444445555 555555555532 1 3334444444333
Q ss_pred hcC-----CHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009977 178 ESN-----QVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLE---SAFEVLKEMKKSQMSYPNLITYSTLIDGLC 249 (521)
Q Consensus 178 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (521)
..+ ++++|...|++..+. + +...+..|...|...+..+ ++.+.+......+ +...+..+...|.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-G---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYR 152 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-T---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 333 555666666665542 1 1125555555555544432 2344444444333 2335555666666
Q ss_pred hcCChHHHHHH----HHHHHhcCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 009977 250 KNGRFREAIEL----FEEMVSKDQILPDALTYNVLIDGFCRGG---KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE 322 (521)
Q Consensus 250 ~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (521)
..+.++++... ++..... .|+ .+..+...|...| +.++|++.|++..+.| +++...+..+..+|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~---~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNT---TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA 226 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTT---CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG
T ss_pred cCCCcccCHHHHHHHHHHHHcC---CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC
Confidence 66644443333 3333211 222 6667777777777 7777777777777766 44554445666666544
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--
Q 009977 323 ----GKLQEAKEVFDEMKNFLLKPDTIGYTTLINC-F--CRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREG-- 393 (521)
Q Consensus 323 ----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 393 (521)
+++++|...|++.. . -+...+..+... | ...+++++|+..|++..+.| +...+..+...|. .|
T Consensus 227 ~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCC
Confidence 67777777777766 2 234555555555 3 35677788888887777765 5566666666666 44
Q ss_pred ---CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 009977 394 ---KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ----KGELEKAIELLRLMLCRGFLPHYATSNELLVRLCK----A 462 (521)
Q Consensus 394 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 462 (521)
++++|..+|++.. .| +...+..+...|.. ..++++|...|++..+.|. ......|...|.. .
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBC
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCC
Confidence 7788888887776 32 45566666666654 3378888888888776542 3344456655553 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 009977 463 GMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 514 (521)
.+.++|...|+...+.| .++.......+......++..+|.++.++.....
T Consensus 372 ~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp CCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 47788888888777765 2222222222233334566777777777766653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-16 Score=137.42 Aligned_cols=196 Identities=17% Similarity=0.076 Sum_probs=88.1
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 009977 200 PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNV 279 (521)
Q Consensus 200 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 279 (521)
++...+..+...+.+.|++++|...|++..+..| .+...|..+..++...|++++|+..|++.++.. |.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 3444555555555556666666666665555554 355555555555556666666666665555542 334445555
Q ss_pred HHHHHHhC-----------CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009977 280 LIDGFCRG-----------GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYT 348 (521)
Q Consensus 280 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 348 (521)
+..++... |++++|+..+++.++.. +.+...+..+..++...|++++|+..|+++.+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 55555554 44444444444444432 2233344444444444444444444444444332 2344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 349 TLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLE 403 (521)
Q Consensus 349 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 403 (521)
.+..+|...|++++|+..|++..+..+. +...+..+...+...|++++|...++
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444444444444444444443222 33334444444444444444444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-16 Score=135.32 Aligned_cols=200 Identities=16% Similarity=0.011 Sum_probs=121.7
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHH
Q 009977 306 NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNII 385 (521)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 385 (521)
+++...+..+...+.+.|++++|...|+++.+... .+...+..+...+.+.|++++|+..+++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 34455556666666666666666666666655321 23555666666666666666666666666655433 45556666
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009977 386 LGGLCRE-----------GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNE 454 (521)
Q Consensus 386 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 454 (521)
...+... |++++|...+++..+..+. +...+..+..++...|++++|+..|+++++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 7777777777777766443 56667777777777788888888887777655 66777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
+..++...|++++|...|+++++.. +.+...+..+..++.+.|++++|.+.|++.-
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777778888888888887777653 3345667777777777888888877777653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-16 Score=138.85 Aligned_cols=226 Identities=10% Similarity=0.013 Sum_probs=142.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CC----cc
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN--PN----VF 310 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~ 310 (521)
....|..++..+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++++.+.... ++ ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 34566777777777777777777777777663 55667777777777777777777777777654311 11 35
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLC 390 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (521)
++..++..+...|++++|...|+++... .|+. ..+...|++++|...++++....+. +...+..+...+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHH
Confidence 6666677777777777777777776653 3342 2344556666666666666655322 3455666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009977 391 REGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAI 470 (521)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 470 (521)
..|++++|...++++...... +...+..+...+...|++++|+..++++++.. +.+...+..+..++...|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 666666666666666654332 45566666666666666666666666666431 2245556666666666666666666
Q ss_pred HHHHHHH
Q 009977 471 ALFGLVE 477 (521)
Q Consensus 471 ~~~~~~~ 477 (521)
.++++.+
T Consensus 229 ~~~~a~~ 235 (258)
T 3uq3_A 229 TLDAART 235 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=151.70 Aligned_cols=379 Identities=11% Similarity=0.031 Sum_probs=251.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCc---hHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKF---EAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
.+...+.+.|++++|++.|+++.+. | +...+..+...+...|+. ++|..+|++..+. +...+..+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 4677788899999999999998654 2 444556677777778888 8999999998854 455667777755
Q ss_pred HccC-----cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHhhhcCCCCCcHHHHHHHHHHH
Q 009977 141 SNCS-----LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVD---LAQNFLKYSNQHLRLKPNTCIFNILIKHH 212 (521)
Q Consensus 141 ~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 212 (521)
...| ++++|++.|++... . -+..++..+...|...+..+ ++...+...... .+...+..+...|
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~--~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y 151 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFA--N--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLY 151 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHH--T--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHH--C--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHH
Confidence 5554 88999999999864 2 22337777777887766543 344455444322 2355778888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--
Q 009977 213 CKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG---RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG-- 287 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 287 (521)
...+.++++.+....+.+.... .+...+..+...|...| +.++|++.|++..+.+ +++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~-~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALN-TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTT-TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGG
T ss_pred HcCCCcccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCC
Confidence 8888665555443333221111 23338888999999999 9999999999998874 56676667788877655
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCcchHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----
Q 009977 288 --GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNG-F--CKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAG---- 358 (521)
Q Consensus 288 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 358 (521)
+++++|..+|++.. . .++..+..|..+ + ...+++++|...|++..+.| +...+..+...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 79999999999987 3 466778888887 4 56899999999999998865 6778888888887 55
Q ss_pred -CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----CCC
Q 009977 359 -RVDEALELLKEMKERGCKADIVTFNIILGGLCR----EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ----KGE 429 (521)
Q Consensus 359 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 429 (521)
++++|+..|++.. .| +...+..+...|.. ..+.++|..+|++..+.|. ......|...|.. ..+
T Consensus 301 ~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d 373 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPD 373 (452)
T ss_dssp CCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCC
T ss_pred CCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCC
Confidence 9999999999888 43 67788888877776 3499999999999988764 3455666666654 468
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 430 LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 430 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
.++|..+|+...+.|.. +.......+......++.++|..+.++..+
T Consensus 374 ~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 374 PLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999977632 222221122222223345666666665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-13 Score=134.01 Aligned_cols=436 Identities=9% Similarity=0.020 Sum_probs=302.6
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCc---HHHHHHH
Q 009977 76 QCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSL---HERVLEM 152 (521)
Q Consensus 76 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~ 152 (521)
.+-+..|+..+..+ +.|...|..++..+.+.+.++.+..+|+.+... .|.....|...+..-.+.|. ++.+.++
T Consensus 49 ~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp SCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 33444555555554 578999999999999999999999999999987 47778888888888888888 9999999
Q ss_pred HHhhccccCCCCCHhHHHHHHHHHHhcCCH--------HHHHHHHHHhhhcCCC-CCc-HHHHHHHHHHHHh--------
Q 009977 153 FHKIHPITREKPSLKAISTCLNLLIESNQV--------DLAQNFLKYSNQHLRL-KPN-TCIFNILIKHHCK-------- 214 (521)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~-------- 214 (521)
|++........|+...|...+......++. +...++|+.++...|. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999874332348888888777666554443 3445788887776676 554 5688887776542
Q ss_pred -cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHhcC-C----CC----
Q 009977 215 -RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK-------------NGRFREAIELFEEMVSKD-Q----IL---- 271 (521)
Q Consensus 215 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~~-~----~~---- 271 (521)
.++++.+..+|+++...... .-..+|......-.. ..+++.|...+.++.... + .+
T Consensus 206 eq~~~~~~R~iy~raL~iP~~-~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMD-CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCS-SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHhHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34578889999998853221 122334222111101 122344555554432110 0 01
Q ss_pred -------C-----C---HHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 009977 272 -------P-----D---ALTYNVLIDGFCRGG-------KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAK 329 (521)
Q Consensus 272 -------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 329 (521)
| + ...|...+..--..+ ..+.+..+|++++..- +.....|...+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 1 134444444322222 1344667888888763 667888988899899999999996
Q ss_pred -HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CC------------cHhHHHHHHH
Q 009977 330 -EVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGC---------KA------------DIVTFNIILG 387 (521)
Q Consensus 330 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~------------~~~~~~~l~~ 387 (521)
++|++.... ++.+...|...+....+.|++++|.++|+.+.+... .| ....|...+.
T Consensus 364 r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 999998874 334677788888888899999999999999886410 12 1236777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 009977 388 GLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK-GELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAE 466 (521)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 466 (521)
...+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|..+|+..++. +.-+...+...+......|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 8888899999999999998761222344554443333344 4599999999999975 4446777778888888999999
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 467 DAAIALFGLVEMGFKP--ESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 467 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
.|..+|++.+....++ ....|..++..-.+.|+.+.+..+.+++.+..|.+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999998764222 236788888888889999999999999999887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-15 Score=134.90 Aligned_cols=233 Identities=10% Similarity=0.020 Sum_probs=101.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhc
Q 009977 280 LIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD--TIGYTTLINCFCRA 357 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 357 (521)
....+...|++++|+..++++.+.. +.+...+..++.+|...|++++|+..++++.+....++ ...|..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3334444444444444444444432 22333444444444444444444444444443211111 22244444444445
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHH
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
|++++|+..|++..+..+. +..++..+...|...|++++|...++++.+.... +...+..+...+...+++++|...|
T Consensus 88 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544443322 3344445555555555555555555544443221 3334444441222233555555555
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCcHHHHHHH
Q 009977 438 RLMLCRGFLP-HYATSNELLVRLCKAGM---AEDAAIALFGLVEMG-FKPE------SDSWALLVELICRGRKLLFAFEL 506 (521)
Q Consensus 438 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~~~ 506 (521)
+++++. .| +...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|.+.
T Consensus 166 ~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555432 22 23444444444444444 444555554444310 0111 13444455555555555555555
Q ss_pred HHHHHHcCccC
Q 009977 507 LDELVIKESGT 517 (521)
Q Consensus 507 ~~~m~~~~~~~ 517 (521)
|+++++.+|++
T Consensus 244 ~~~al~~~p~~ 254 (272)
T 3u4t_A 244 WKNILALDPTN 254 (272)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHhcCccH
Confidence 55555554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-15 Score=133.37 Aligned_cols=226 Identities=11% Similarity=0.053 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCC----HHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ-ILPD----ALT 276 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~ 276 (521)
...+..++..+...|++++|...|+++.+.. .+...|..++.++...|++++|++.++++.+..+ ..++ ...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 4466667777777777777777777776655 3556667777777777777777777777665421 1111 456
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (521)
+..+...+...|++++|...++++.+.. |+ ...+...|++++|...++.+.... ..+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 6677777777777777777777776642 33 234555666777777777766532 1134556666667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHH
Q 009977 357 AGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIEL 436 (521)
Q Consensus 357 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (521)
.|++++|+..++++.+.... +..++..+...+...|++++|...++++.+.... +...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77777777777777665433 5666777777777777777777777777665432 456666777777777777777777
Q ss_pred HHHHHH
Q 009977 437 LRLMLC 442 (521)
Q Consensus 437 ~~~~~~ 442 (521)
++++.+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-15 Score=140.68 Aligned_cols=228 Identities=12% Similarity=0.071 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR-FREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
+|+.+..++.+.|++++|++.++++....+ .+..+|+.+..++...|+ +++|+..|++++..+ +-+...|..+..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P--~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~ 174 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 455555555555666666666665555554 355555555555555554 666666666555542 334555555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR-AGRVD 361 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 361 (521)
++...|++++|+..|+++++.. +.+..+|..+..++...|++++|+..++++.+.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 5555566666666665555544 344555555555555555555555555555553221 35555555555555 33334
Q ss_pred HH-----HHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCC------
Q 009977 362 EA-----LELLKEMKERGCKADIVTFNIILGGLCREG--KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKG------ 428 (521)
Q Consensus 362 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 428 (521)
+| +..+++.++..+. +...|..+...+...| ++++|++.+.++ +.. ..+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 44 3555555554333 4455555555555555 355555555555 222 123445555555555442
Q ss_pred ---CHHHHHHHHHHH
Q 009977 429 ---ELEKAIELLRLM 440 (521)
Q Consensus 429 ---~~~~a~~~~~~~ 440 (521)
..++|+++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 135566666665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-14 Score=128.29 Aligned_cols=225 Identities=11% Similarity=0.006 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcch
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFN 311 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (521)
.+..++..+...+...|++++|++.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 35566667777777777777777777777653 234566667777777 777777777777776654 5556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 009977 312 YTTLMNGFCK----EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR----AGRVDEALELLKEMKERGCKADIVTFN 383 (521)
Q Consensus 312 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (521)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 6667777776 777777777777766642 55666666666666 677777777777666654 445556
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009977 384 IILGGLCR----EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ----KGELEKAIELLRLMLCRGFLPHYATSNEL 455 (521)
Q Consensus 384 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 455 (521)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..++++.+.+ | ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHH
Confidence 66666665 666666666666666553 34555556666666 666666666666666542 2 4455556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 009977 456 LVRLCK----AGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 456 ~~~~~~----~g~~~~a~~~~~~~~~~~ 479 (521)
...|.. .+++++|...|++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666665 666666666666666553
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-15 Score=134.81 Aligned_cols=233 Identities=11% Similarity=0.011 Sum_probs=146.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--HHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD--ALTYNVLI 281 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~ 281 (521)
.+...+..+...|++++|+..|+++.+..+ .+...+..++.++...|++++|++.++++.... ..++ ...|..+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY--NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC--CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHH
Confidence 344556667777777777777777776665 345566777777777777777777777776632 1111 33466777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVD 361 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (521)
..+...|++++|++.++++.+.. +.+..++..++..|...|++++|...+++..+.. ..+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777654 4455667777777777777777777777766542 223555665552333345777
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CccC------HHHHHHHHHHHHcCCCHH
Q 009977 362 EALELLKEMKERGCKADIVTFNIILGGLCREGK---IEEALGMLEKLWYDG-IYLN------KASYRIVLNFSCQKGELE 431 (521)
Q Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~ 431 (521)
+|+..|+++.+..+. +...+..+...+...|+ +++|...++++.+.. ..|+ ...|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 777777777765432 35556666666666666 666666666655431 1122 134555666666666666
Q ss_pred HHHHHHHHHHH
Q 009977 432 KAIELLRLMLC 442 (521)
Q Consensus 432 ~a~~~~~~~~~ 442 (521)
+|...++++++
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666666664
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-15 Score=138.69 Aligned_cols=250 Identities=9% Similarity=-0.025 Sum_probs=209.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGK-VDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
+...|..+...+...|++++|++.|++++... +-+...|+.+..++...|+ +++|+..|+++++.. +.+..+|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 45678888889999999999999999999874 6678899999999999996 999999999999986 6678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCC
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCR-EGK 394 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 394 (521)
..++...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999985432 6889999999999999999999999999998765 78899999999999 666
Q ss_pred HHHH-----HHHHHHHHHCCCccCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 009977 395 IEEA-----LGMLEKLWYDGIYLNKASYRIVLNFSCQKG--ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAG---- 463 (521)
Q Consensus 395 ~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---- 463 (521)
.++| +..++++....+. +...|..+...+...| ++++|++.++++ + .-..+...+..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 5888888887544 6778999888888888 689999999888 3 22337778888999998864
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCH-HHHHHHHHHHHc
Q 009977 464 -----MAEDAAIALFGL-VEMGFKPES-DSWALLVELICR 496 (521)
Q Consensus 464 -----~~~~a~~~~~~~-~~~~~~~~~-~~~~~l~~~~~~ 496 (521)
.+++|..+++++ .+. .|.. ..|..+...+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHH
Confidence 358999999998 665 4544 566666665543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-15 Score=135.91 Aligned_cols=220 Identities=13% Similarity=-0.005 Sum_probs=105.8
Q ss_pred cCChHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSY--PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDR 292 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 292 (521)
.|++++|+..|+++.+..+.. .+..+|..++..+...|++++|+..|+++.... +.+...+..+...+...|++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHHH
Confidence 345555555555555442210 134445555555555566666666665555542 3345555555555555566666
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKE 372 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 372 (521)
|.+.++++.+.. +.+..++..++.+|...|++++|...++++.+. .|+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 665555555543 334445555555555555555555555555542 22222222222333444555556555555544
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc---CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 373 RGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYL---NKASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 373 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
.... +...+ .++..+...++.++|...++++....... +...+..+...|...|++++|...|++++
T Consensus 173 ~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 173 KSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3221 22222 24444444555555555555544331110 12334444444445555555555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-14 Score=124.80 Aligned_cols=224 Identities=12% Similarity=-0.000 Sum_probs=168.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK----NGRFREAIELFEEMVSKDQILPDALT 276 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 276 (521)
+..++..+...+...|++++|...|++..+. .+..++..+...+.. .+++++|++.|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHH
Confidence 4566777777777788888888888877762 355667777777777 888888888888877652 5667
Q ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009977 277 YNVLIDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK----EGKLQEAKEVFDEMKNFLLKPDTIGYT 348 (521)
Q Consensus 277 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 348 (521)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 7777777777 788888888888877764 56677777777877 788888888888877743 566677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCccCHHHHHHH
Q 009977 349 TLINCFCR----AGRVDEALELLKEMKERGCKADIVTFNIILGGLCR----EGKIEEALGMLEKLWYDGIYLNKASYRIV 420 (521)
Q Consensus 349 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 420 (521)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+. ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHH
Confidence 77777777 788888888888877764 45677777778888 8888888888888877642 5667777
Q ss_pred HHHHHc----CCCHHHHHHHHHHHHHCC
Q 009977 421 LNFSCQ----KGELEKAIELLRLMLCRG 444 (521)
Q Consensus 421 ~~~~~~----~g~~~~a~~~~~~~~~~~ 444 (521)
...|.. .+++++|...|+++.+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777 788888888888887643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=136.54 Aligned_cols=246 Identities=13% Similarity=-0.006 Sum_probs=121.1
Q ss_pred CCHHHHHHHHHHhhhcCCCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 180 NQVDLAQNFLKYSNQHLRLK--PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
|++++|...++.+++..... .+..++..++..+...|++++|...|+++.+..+ .+..+|..++..+...|++++|
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHccCHHHH
Confidence 44444555554444321111 1234555555555556666666666655555544 3455555555556666666666
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 258 IELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
++.|+++.... +.+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+.+...
T Consensus 97 ~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666555542 2334555555555666666666666665555542 2222333333344445566666666655444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCH
Q 009977 338 FLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA---DIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNK 414 (521)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 414 (521)
.. .++...+. ++..+...++.++|+..++...+..... +...+..+...|...|++++|...++++....+. +
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N- 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T-
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h-
Confidence 21 12222222 4444455555556666655554332110 1345566666666666666666666666654321 1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Q 009977 415 ASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 122233444555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-14 Score=125.59 Aligned_cols=96 Identities=14% Similarity=-0.017 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
..+..++..+...|++++|.+.|+++.+..+ .+...+..++..+...|++++|++.++++.+.. +.+...+..+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence 3444455555555555555555555544433 234444444555555555555555555444431 223344444444
Q ss_pred HHHhCCCHHHHHHHHHHHHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~ 302 (521)
.+...|++++|.++++++.+
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHh
Confidence 44444444444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-14 Score=125.94 Aligned_cols=198 Identities=14% Similarity=0.007 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHH
Q 009977 98 YATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLI 177 (521)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (521)
|..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|++.|+++... .+.+...+..+...+.
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHH
Confidence 3333344444444444444444444332 223334444444444444444444444443321 1122333333444444
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKP-NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFRE 256 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 256 (521)
..|++++|...++++.+ .+..| +...+..++..+...|++++|.+.|+++.+..+ .+...+..++..+...|++++
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR--NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCCHHH
Confidence 44444444444444432 11122 334555555555555666666666555555443 345555555555666666666
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 257 AIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 257 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
|...++++.+. .+.+...+..+...+...|++++|.+.++.+.+.
T Consensus 194 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666655543 2334445555555555556666666665555554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-15 Score=130.65 Aligned_cols=200 Identities=18% Similarity=0.134 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..++..+...|++++|...|+++.+..+ .+...+..++..+...|++++|++.++++.... +.+...+..+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAG 98 (243)
T ss_dssp -------------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHH
Confidence 34555556666666666666666666665544 355566666666666666666666666665542 33455566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVD 361 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 361 (521)
..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. ..+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666665543 3344555556666666666666666666655432 123555555555666666666
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 362 EALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
+|+..++++.+.... +..++..+...|...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666665554322 4445555555666666666666666655554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-14 Score=121.88 Aligned_cols=201 Identities=13% Similarity=-0.009 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..++..+...|++++|.+.|+++.+..+ .+...|..++..+...|++++|.+.++++.... +.+...+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 33445555555555555555555555554443 344455555555555555555555555554432 33444555555
Q ss_pred HHHHhC-CCHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009977 282 DGFCRG-GKVDRAKKIMEFMKNNGCNP-NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR 359 (521)
Q Consensus 282 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 359 (521)
..+... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+... .+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 555555 55555555555555411111 133444555555555555555555555544321 134455555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 360 VDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWY 407 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 407 (521)
+++|...++++.+.....+...+..+...+...|+.+++..+++.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555555443212444445555555555555555555555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-15 Score=129.95 Aligned_cols=200 Identities=12% Similarity=0.077 Sum_probs=129.6
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
...|..+...+...|++++|+..|+++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp -------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4466777788888999999999999987543 5567888888899999999999999999988775 456777888888
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
.|...|++++|++.|+++... .+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 888888888888888887542 2334556666666677777777777777766542 233455666666677777777
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
++|...|+++.+..+ .+..++..++.++...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDP--GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777776666554 45566666666667777777777777666654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-14 Score=123.30 Aligned_cols=203 Identities=12% Similarity=0.013 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHH
Q 009977 94 NNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCL 173 (521)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 173 (521)
+...|..++..+...|++++|...++++.+.. +.+...+..+...|...|++++|++.|+++... .+.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 34455555666666666666666666665543 334555555666666666666666666655421 122344445555
Q ss_pred HHHHhc-CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 174 NLLIES-NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 174 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
..+... |++++|...++.+.+....+.+...+..++..+...|++++|...++++.+..+ .+...+..++..+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP--QFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHcC
Confidence 555555 555555555555543111122244555555666666666666666666555443 34555555566666666
Q ss_pred ChHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 253 RFREAIELFEEMVSKDQIL-PDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
++++|...++++.... + .+...+..+...+...|+.+.+..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666666666655442 2 34444555555555556666666555555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.5e-17 Score=159.06 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=95.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH
Q 009977 308 NVFNYTTLMNGFCKEGKLQEAKEVFDEMKN---FLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI 384 (521)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 384 (521)
-..+|++|+.+|++.|++++|.++|++|.+ .|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877653 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc
Q 009977 385 ILGGLCREGK-IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ 426 (521)
Q Consensus 385 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (521)
+|.++++.|+ .++|.++|++|...|+.||..+|+.++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 8888888886 46788888888888888888888887765443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=158.87 Aligned_cols=117 Identities=14% Similarity=0.195 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSK--DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
..+|+++|.+|++.|+.++|.++|++|.+. .|..||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 345666666666666666666666555421 145666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009977 316 MNGFCKEGK-LQEAKEVFDEMKNFLLKPDTIGYTTLINCF 354 (521)
Q Consensus 316 ~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (521)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 666666665 355666666666666666666666655433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-15 Score=140.59 Aligned_cols=300 Identities=15% Similarity=0.033 Sum_probs=165.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CC-CCCH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN--LITYSTLIDGLCKNGRFREAIELFEEMVSKD---QI-LPDA 274 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~ 274 (521)
....+......+...|++++|...|+++.+..+..+. ..+|..++..+...|++++|+..++++.... +. +...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3344445555555555555555555555554432111 2345555555555666666665555543320 00 1113
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----cchHHHHHHHHHhcCC--------------------HHHHH
Q 009977 275 LTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN-PN----VFNYTTLMNGFCKEGK--------------------LQEAK 329 (521)
Q Consensus 275 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~A~ 329 (521)
.++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 34555555556666666666665555432100 01 2245556666666666 66666
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCCHHHHH
Q 009977 330 EVFDEMKNF----LLKP-DTIGYTTLINCFCRAGRVDEALELLKEMKERGCK-AD----IVTFNIILGGLCREGKIEEAL 399 (521)
Q Consensus 330 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~ 399 (521)
..+.+.... +..+ ...++..+...|...|++++|+..+++..+.... ++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666554321 1011 1345666666777777777777777766543110 11 235667777777777888877
Q ss_pred HHHHHHHHCC----Ccc-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 009977 400 GMLEKLWYDG----IYL-NKASYRIVLNFSCQKGELEKAIELLRLMLCR----GFLP-HYATSNELLVRLCKAGMAEDAA 469 (521)
Q Consensus 400 ~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~ 469 (521)
..+++..... ..+ ...++..+...|...|++++|...++++.+. +-.+ ...++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777765431 111 1345667777777788888888887777642 1111 2456667777777888888888
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHccCcH
Q 009977 470 IALFGLVEM----GFKPE-SDSWALLVELICRGRKL 500 (521)
Q Consensus 470 ~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~ 500 (521)
..+++..+. +..+. ..++..+...+...|+.
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 887776542 21111 24555666666666654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-15 Score=140.74 Aligned_cols=205 Identities=16% Similarity=0.062 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcC----HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCC----CCHh
Q 009977 96 ATYATILDKLARYKKFEAVDAVLRQMTYETCKFH----EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREK----PSLK 167 (521)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~ 167 (521)
..+......+...|++++|...|++..+.+ +.+ ..++..+...|...|++++|+..|++........ ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444445555555555555555554442 112 1234444455555555555555554432211000 0112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC----cHHHHHHHHHHHHhcCC--------------------hHHHHH
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKP----NTCIFNILIKHHCKRGT--------------------LESAFE 223 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~--------------------~~~A~~ 223 (521)
++..+...+...|++++|...++++.+...-.+ ...++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 233334444444444444444444332100000 12345555555555555 555555
Q ss_pred HHHHHHhC----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhCCCHHHHHH
Q 009977 224 VLKEMKKS----QMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD----ALTYNVLIDGFCRGGKVDRAKK 295 (521)
Q Consensus 224 ~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 295 (521)
.+++.... +.......++..++..+...|++++|+..+++........++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55544321 000011234455555555555555555555555432111111 1244444555555555555555
Q ss_pred HHHHHH
Q 009977 296 IMEFMK 301 (521)
Q Consensus 296 ~~~~~~ 301 (521)
.+++..
T Consensus 249 ~~~~al 254 (406)
T 3sf4_A 249 YYKKTL 254 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-15 Score=140.93 Aligned_cols=274 Identities=16% Similarity=0.073 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCC
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL----ITYSTLIDGLCKNGRFREAIELFEEMVSKD----QILPD 273 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~ 273 (521)
...+..+...+...|++++|...|+++.+..+. +. ..|..++..+...|++++|+..++++.... ..+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE--DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 445666778888888999998888888887653 33 467788888888888888888888876531 01223
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCcchHHHHHHHHHhcCC-----------------HHHHHHH
Q 009977 274 ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG-----CNPNVFNYTTLMNGFCKEGK-----------------LQEAKEV 331 (521)
Q Consensus 274 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~ 331 (521)
...+..+...|...|++++|...++++.+.. .+....++..+...|...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 4567777778888888888888887776531 01123456666777777777 6667666
Q ss_pred HHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCCHHHHHHH
Q 009977 332 FDEMKNF----LLKP-DTIGYTTLINCFCRAGRVDEALELLKEMKERGCK-AD----IVTFNIILGGLCREGKIEEALGM 401 (521)
Q Consensus 332 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~ 401 (521)
+++..+. +..+ ....+..+...|...|++++|+..+++..+.... ++ ..++..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 6654331 0001 1234555556666666666666666665543110 01 11455555566666666666666
Q ss_pred HHHHHHCCCc-----cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 402 LEKLWYDGIY-----LNKASYRIVLNFSCQKGELEKAIELLRLMLCR----GFLP-HYATSNELLVRLCKAGMAEDAAIA 471 (521)
Q Consensus 402 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 471 (521)
++++...... ....++..+...|...|++++|...++++++. +..+ ...++..+...|...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6655543111 01234455555555566666666666555532 0000 123444455555555555555555
Q ss_pred HHHHHH
Q 009977 472 LFGLVE 477 (521)
Q Consensus 472 ~~~~~~ 477 (521)
+++..+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.2e-15 Score=139.15 Aligned_cols=275 Identities=16% Similarity=0.064 Sum_probs=202.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCCH
Q 009977 167 KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNT----CIFNILIKHHCKRGTLESAFEVLKEMKKSQ----MSYPNL 238 (521)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~ 238 (521)
..+..+...+...|++++|...++++++.. +.+. .++..+...|...|++++|...+++..... ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566778888999999999999887642 2232 478888899999999999999999876531 111345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhCCC-----------------HHHHHHHH
Q 009977 239 ITYSTLIDGLCKNGRFREAIELFEEMVSKDQ----ILPDALTYNVLIDGFCRGGK-----------------VDRAKKIM 297 (521)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 297 (521)
.++..+...+...|++++|+..++++..... .+....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6778888899999999999999988865411 12234577888888888999 89999888
Q ss_pred HHHHHc----CC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 298 EFMKNN----GC-NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PD----TIGYTTLINCFCRAGRVDEALELL 367 (521)
Q Consensus 298 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~ 367 (521)
++..+. +. +....++..+...|...|++++|...+++..+.... .+ ...+..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 877652 11 112346778888899999999999999887653111 12 236778888899999999999999
Q ss_pred HHHHHcCCC-----CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----ccCHHHHHHHHHHHHcCCCHHHHHHHH
Q 009977 368 KEMKERGCK-----ADIVTFNIILGGLCREGKIEEALGMLEKLWYDGI-----YLNKASYRIVLNFSCQKGELEKAIELL 437 (521)
Q Consensus 368 ~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (521)
++..+.... ....++..+...|...|++++|...+++...... .....++..+...|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 887754211 1145677888889999999999999998876411 112346777888889999999999999
Q ss_pred HHHHHC
Q 009977 438 RLMLCR 443 (521)
Q Consensus 438 ~~~~~~ 443 (521)
+++.+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998854
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-12 Score=124.65 Aligned_cols=427 Identities=10% Similarity=0.030 Sum_probs=294.7
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC---chHHHHHHHHhhhcc-CCcCHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKK---FEAVDAVLRQMTYET-CKFHEGI 132 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 132 (521)
.+..+|..++..+.+.+.++.|..+|++++.. +|.....|...+..-.+.++ ++.+..+|++.+... .+|+...
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 36778999999999999999999999999865 47788889999999889998 999999999999764 1378888
Q ss_pred HHHHHHHHHccCcH--------HHHHHHHHhhccccCC-CC-CHhHHHHHHHHHH---------hcCCHHHHHHHHHHhh
Q 009977 133 FLNLMKHFSNCSLH--------ERVLEMFHKIHPITRE-KP-SLKAISTCLNLLI---------ESNQVDLAQNFLKYSN 193 (521)
Q Consensus 133 ~~~l~~~~~~~g~~--------~~a~~~~~~~~~~~~~-~~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 193 (521)
|...+....+.++. +.+.++|++.....+. .+ +...|...+.... ..++++.+..+|+.++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88777665554432 4455788876544444 33 4466777666543 2345788899999887
Q ss_pred hcCCCCC--cHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHhC--CCCC--------------C--C---
Q 009977 194 QHLRLKP--NTCIFNILIKHHCK-------------RGTLESAFEVLKEMKKS--QMSY--------------P--N--- 237 (521)
Q Consensus 194 ~~~~~~~--~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~~--~~~~--------------~--~--- 237 (521)
. ++. -..+|......-.. ..+++.|...+.++... +... | +
T Consensus 222 ~---iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 222 C---QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp T---SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred h---CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 4 322 12344322221111 12344455555553211 1100 0 0
Q ss_pred ---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCC
Q 009977 238 ---LITYSTLIDGLCKNG-------RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAK-KIMEFMKNNGCN 306 (521)
Q Consensus 238 ---~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~ 306 (521)
...|...+.---..+ ..+.+..+|++++.. .+.+...|...+..+...|+.++|. ++|++.... ++
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P 375 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP 375 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence 234555554333322 124466789998876 4567788888888888899999996 999999875 35
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHH
Q 009977 307 PNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL---------LKPD------------TIGYTTLINCFCRAGRVDEALE 365 (521)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~A~~ 365 (521)
.+...+...+....+.|+++.|.++|+.+.... -.|+ ...|...+....+.|..+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 566667788888999999999999999887531 0131 3367788888888899999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 366 LLKEMKERGCKADIVTFNIILGGLCRE-GKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
+|..+.+.........|...+..-.+. ++.+.|.++|+...+. ..-+...|...+......|+.+.|..+|++++...
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999998761112334444444333444 4589999999999886 22356677788888888999999999999999653
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009977 445 FLP--HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELI 494 (521)
Q Consensus 445 ~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 494 (521)
..+ ....|..++..-.+.|+.+.+..+.+++.+. .|+......+++-|
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 222 4567888888888999999999999999876 35544444444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=134.29 Aligned_cols=278 Identities=11% Similarity=0.051 Sum_probs=142.5
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHhhhcc-----CCcCHHH
Q 009977 62 HGAAISLIKCEKEPQCALEIFNTVSEQKGFNHN----NATYATILDKLARYKKFEAVDAVLRQMTYET-----CKFHEGI 132 (521)
Q Consensus 62 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 132 (521)
+......+...|++++|+..|++++... +.+ ...+..+...+...|++++|...+++..+.. .+....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3345566777888888888888876543 223 3567777778888888888888887765431 1112345
Q ss_pred HHHHHHHHHccCcHHHHHHHHHhhccccCCCCC----HhHHHHHHHHHHhcCC--------------------HHHHHHH
Q 009977 133 FLNLMKHFSNCSLHERVLEMFHKIHPITREKPS----LKAISTCLNLLIESNQ--------------------VDLAQNF 188 (521)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~ 188 (521)
+..+...|...|++++|++.+++........++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 566777777777877777777765432222222 1234444555555555 5555544
Q ss_pred HHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 189 LKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
+++..... ...+.......++..+...+...|++++|++.+++..+..
T Consensus 166 ~~~a~~~~--------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 166 YEENLSLV--------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHH--------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44432110 0000000112234444444455555555555544443221
Q ss_pred CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009977 269 QILPD----ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN-PN----VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL 339 (521)
Q Consensus 269 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 339 (521)
...++ ..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...++++....
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 00011 124444555555555555555555544432100 00 2344455555555666666665555543310
Q ss_pred ----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009977 340 ----LK-PDTIGYTTLINCFCRAGRVDEALELLKEMKER 373 (521)
Q Consensus 340 ----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 373 (521)
.. ....++..+...|...|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 00 01334555666666666666666666666554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-13 Score=121.33 Aligned_cols=217 Identities=11% Similarity=0.012 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------CCCH-------HHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 009977 255 REAIELFEEMVSKDQILPDALTYNVLIDGFCR-------GGKV-------DRAKKIMEFMKNNGCNPNVFNYTTLMNGFC 320 (521)
Q Consensus 255 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (521)
++|+..|++++... +.+...|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45666666666542 4455555555555542 3443 555555555555211233345555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH-hcCCHHH
Q 009977 321 KEGKLQEAKEVFDEMKNFLLKPD-TI-GYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLC-REGKIEE 397 (521)
Q Consensus 321 ~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 397 (521)
+.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.... +...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHH
Confidence 555555555555555542 222 22 4555555555555555555555555544321 2223322222211 1355555
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 398 ALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG-FLP--HYATSNELLVRLCKAGMAEDAAIALFG 474 (521)
Q Consensus 398 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 474 (521)
|..+|+++.+..+. +...|..++..+.+.|++++|..+|++++... +.| ....|..++....+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555443221 34445555555555555555555555555431 233 234444455555555555555555555
Q ss_pred HHH
Q 009977 475 LVE 477 (521)
Q Consensus 475 ~~~ 477 (521)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-14 Score=131.29 Aligned_cols=278 Identities=15% Similarity=0.047 Sum_probs=129.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---C-CCCCHHHHH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN--LITYSTLIDGLCKNGRFREAIELFEEMVSKD---Q-ILPDALTYN 278 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~~~~~ 278 (521)
+......+...|++++|...|+++.+..+..+. ...+..++..+...|++++|++.++++.... + .+....++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 344455556666666666666666555432111 2445556666666666666666666554320 0 011133455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----cchHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 009977 279 VLIDGFCRGGKVDRAKKIMEFMKNNGCN-PN----VFNYTTLMNGFCKEGK--------------------LQEAKEVFD 333 (521)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 333 (521)
.+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 5555666666666666666555432100 01 1244445555555555 455544444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 009977 334 EMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGC-KADIVTFNIILGGLCREGKIEEALGMLEKLWYDG--- 409 (521)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 409 (521)
+.... .. ..+. .....++..+...+...|++++|...+++.....
T Consensus 168 ~a~~~----------------------------~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 168 ENLSL----------------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHH----------------------------HH---HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------------------------HH---hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 43220 00 0000 0011233334444444444444444444433210
Q ss_pred --CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 009977 410 --IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR----GFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM---- 478 (521)
Q Consensus 410 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 478 (521)
......++..+...+...|++++|...++++.+. +..+ ...++..+...+...|++++|...++++.+.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 0001123444444555555555555555554421 0000 1334455555566666666666666555431
Q ss_pred CCCC-CHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 009977 479 GFKP-ESDSWALLVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 479 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
+-.+ ...++..+...+.+.|++++|.+.++++++.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1000 1235556666666677777777777666654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.2e-14 Score=130.79 Aligned_cols=164 Identities=11% Similarity=0.005 Sum_probs=91.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C-----CcchHH
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSKDQILP----DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN-P-----NVFNYT 313 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 313 (521)
.+..+...|++++|+..|++........+ ...++..+...|...|++++|...+.+..+.-.. + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55666777888888888877765311112 2346677777777777777777777766642100 1 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCcHhHHH
Q 009977 314 TLMNGFCKEGKLQEAKEVFDEMKNFLLK-PD----TIGYTTLINCFCRAGRVDEALELLKEMKER----GC-KADIVTFN 383 (521)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~ 383 (521)
.++.+|...|++++|...+++..+.... ++ ..++..+...|...|++++|+..+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5666666666666666666655431000 11 134555555566666666666666555541 11 11234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 384 IILGGLCREGKIEEALGMLEKLWY 407 (521)
Q Consensus 384 ~l~~~~~~~g~~~~a~~~~~~~~~ 407 (521)
.+...|...|++++|...+++...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555556666666555555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=114.84 Aligned_cols=168 Identities=14% Similarity=0.026 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNF 423 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (521)
...|..+...|...|++++|+..|++..+..+. +..++..+..+|...|++++|...+..+...... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 445555555555555555555555555554433 4455555555555555555555555555544322 34444455555
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLF 502 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (521)
+...++++.|...+.++.+. .| +...+..+...+.+.|++++|+..|++.++.. +.+...|..++.+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555532 22 44555555555556666666666665555442 2334555555566666666666
Q ss_pred HHHHHHHHHHcCcc
Q 009977 503 AFELLDELVIKESG 516 (521)
Q Consensus 503 A~~~~~~m~~~~~~ 516 (521)
|.+.|+++++.+|.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 66666666555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-13 Score=128.94 Aligned_cols=233 Identities=9% Similarity=-0.003 Sum_probs=162.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-----HHHH
Q 009977 207 ILIKHHCKRGTLESAFEVLKEMKKSQMSYP----NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD-----ALTY 277 (521)
Q Consensus 207 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~ 277 (521)
..+..+...|++++|...|++..+.....+ ...++..++..+...|++++|+..+++..+.....++ ..++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 366777888999999998888876411112 3467788888888999999999988887754221222 4567
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----cchHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHH
Q 009977 278 NVLIDGFCRGGKVDRAKKIMEFMKNNGCN-PN----VFNYTTLMNGFCKEGKLQEAKEVFDEMKNF----LL-KPDTIGY 347 (521)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~ 347 (521)
+.+...|...|++++|...+++..+.... ++ ..++..++.+|...|++++|...+++..+. +. .....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88888899999999999999888753211 11 236778899999999999999999887661 22 2236678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCcHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCcc-CHHHHHH
Q 009977 348 TTLINCFCRAGRVDEALELLKEMKERG----CKADIVTFNIILGGLCREGK---IEEALGMLEKLWYDGIYL-NKASYRI 419 (521)
Q Consensus 348 ~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~ 419 (521)
..+...|...|++++|...+++..+.. .......+..+...+...|+ +++|+.++++. +..+ ....+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 888889999999999999998876541 11112234556667777777 66666666554 2222 2345566
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 009977 420 VLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
+...|...|++++|...++++.+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777663
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.9e-13 Score=111.00 Aligned_cols=167 Identities=19% Similarity=0.154 Sum_probs=96.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
++.+|..++..|...|++++|++.|++..+..| .+..+|..++.++...|++++|+..+.++.... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 344566666666666666666666666666554 355566666666666666666666666665542 3344555555
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRV 360 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (521)
...+...++++.|...+.+..+.. +.+...+..+..+|.+.|++++|++.|++..+... .+..+|..+..+|.+.|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCH
Confidence 555666666666666666655543 34455555556666666666666666665555321 1355555555566666666
Q ss_pred HHHHHHHHHHHHc
Q 009977 361 DEALELLKEMKER 373 (521)
Q Consensus 361 ~~A~~~~~~~~~~ 373 (521)
++|+..|++.++.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 6666666655554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-12 Score=115.89 Aligned_cols=219 Identities=11% Similarity=0.057 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLC-------KNGRF-------REAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
++|..+|++.....+ .+...|..++..+. ..|++ ++|..+|++.+..- .+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHH
Confidence 566677777766555 46666766666654 34665 77777777776520 133455677777777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 009977 285 CRGGKVDRAKKIMEFMKNNGCNPNVF-NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFC-RAGRVDE 362 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 362 (521)
.+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|+++.+... .+...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777642 22233 677777777777777777777777776432 23344433332222 2578888
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-Ccc--CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 009977 363 ALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDG-IYL--NKASYRIVLNFSCQKGELEKAIELLRL 439 (521)
Q Consensus 363 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (521)
|..+|++..+..+. +...|..++..+.+.|++++|..+|+++.... ..| ....|..++..+...|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877765433 56677777777777888888888888887752 233 355677777777777888888888887
Q ss_pred HHHC
Q 009977 440 MLCR 443 (521)
Q Consensus 440 ~~~~ 443 (521)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-13 Score=132.20 Aligned_cols=213 Identities=10% Similarity=-0.057 Sum_probs=151.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009977 182 VDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL-ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIEL 260 (521)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 260 (521)
++++...++.... ..+.+...+..+...+...|++ ++|++.|++..+..+ .+...|..++.+|...|++++|++.
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445555554432 2234667777888888888888 888888888877765 4677788888888888888888888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc--------C
Q 009977 261 FEEMVSKDQILPDALTYNVLIDGFCRG---------GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE--------G 323 (521)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~ 323 (521)
|+++++. .|+...+..+...+... |++++|++.++++.+.. +.+...+..+..+|... |
T Consensus 160 ~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 8888765 35567777777777777 78888888888877764 45566777777777777 7
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 009977 324 KLQEAKEVFDEMKNFLLK--PDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGM 401 (521)
Q Consensus 324 ~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 401 (521)
++++|+..|+++.+.... .+...|..+..+|...|++++|+..|++..+..+. +...+..+...+...|++++|...
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777787777777764210 25677777777777777777777777777766543 555677777777777777777665
Q ss_pred HH
Q 009977 402 LE 403 (521)
Q Consensus 402 ~~ 403 (521)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 43
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=133.21 Aligned_cols=209 Identities=8% Similarity=-0.101 Sum_probs=109.8
Q ss_pred hHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcH-HHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 112 EAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLH-ERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLK 190 (521)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 190 (521)
+++.+.++...... +.+...+..+...|...|++ ++|++.|++..+. .+.+..++..+..+|...|++++|...|+
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444332 33455555566666666666 6666666655432 22334455555555555566666655555
Q ss_pred HhhhcCCCCCcHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--------CC
Q 009977 191 YSNQHLRLKPNTCIFNILIKHHCKR---------GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN--------GR 253 (521)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 253 (521)
++++ ..|+..++..+..++... |++++|.+.|++..+..+ .+...|..++.+|... |+
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhhccccch
Confidence 5542 234445555555555555 555555555555555544 3455555555555555 55
Q ss_pred hHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 009977 254 FREAIELFEEMVSKDQIL---PDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKE 330 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (521)
+++|++.|+++.+.. + .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 237 ~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 237 SQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555432 2 244555555555555555555555555555543 3334444555555555555555544
Q ss_pred H
Q 009977 331 V 331 (521)
Q Consensus 331 ~ 331 (521)
.
T Consensus 314 ~ 314 (474)
T 4abn_A 314 S 314 (474)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-14 Score=127.89 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc------C
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKS-------QMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK------D 268 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 268 (521)
..++..++..+...|++++|..+++++.+. ... ....++..++..+...|++++|+..++++... .
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 446666666666677777777666666552 111 33455666666777777777777777666543 1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CC-CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 009977 269 QILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN------GC-NPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNF--- 338 (521)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 338 (521)
..+....++..+...+...|++++|...++++.+. +. +....++..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11223455666666677777777777777666543 11 112334556666666667777776666665442
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 339 ---LLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKE 372 (521)
Q Consensus 339 ---~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 372 (521)
+..|. ..++..+...|...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 34555666666666777777766666654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-12 Score=117.59 Aligned_cols=163 Identities=10% Similarity=0.062 Sum_probs=76.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----CHHHHHHH
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKP----NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP-----NLITYSTL 244 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l 244 (521)
..+...|++++|...++++.+.....+ ...++..++..|...|+++.|...+++..+.....+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 334455555555555555543211111 123555556666666666666665555443211101 13345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCcchHHHH
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILP----DALTYNVLIDGFCRGGKVDRAKKIMEFMKN-----NGCNPNVFNYTTL 315 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 315 (521)
+..|...|++++|++.|++..+.....+ ...++..+..+|...|++++|...+++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 5556666666666666555543210001 122444555555555555555555555544 21 1223344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
+.+|.+.|++++|...+++..+
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555554443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-12 Score=119.58 Aligned_cols=268 Identities=14% Similarity=0.093 Sum_probs=126.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCH----HHHHHH
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNT----CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNL----ITYSTL 244 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l 244 (521)
...+...|++++|...+++.+.... ..+. .+++.+...+...|++++|...+++.........+. .++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556666666666666554321 1111 144555566666666666666666654422111121 223445
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC---CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----CcchHHH
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKD---QIL--P-DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNP----NVFNYTT 314 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ 314 (521)
...+...|++++|+..+++..... +.. | ....+..+...+...|++++|...+++..+..... ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 556666666666666666655421 111 1 12344445555666666666666666655432111 1123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhHHHHH
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYT-----TLINCFCRAGRVDEALELLKEMKERGCKA---DIVTFNII 385 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l 385 (521)
+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 55555566666666666655543211111 01111 12223445566666665555554332111 01133444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCccCH-HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYD----GIYLNK-ASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555555555554332 111111 133344444555555555555555554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-14 Score=129.28 Aligned_cols=178 Identities=11% Similarity=0.037 Sum_probs=99.5
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCC------CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhcc-------
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQK------GFNHNNATYATILDKLARYKKFEAVDAVLRQMTYET------- 125 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 125 (521)
...+..+...+...|++++|+.+|+++.... ..+.....+..+...+...|++++|...+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456667777777777777777777765410 112234456666666677777777777776665431
Q ss_pred CCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHH
Q 009977 126 CKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIF 205 (521)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (521)
.+....++..+...|...|++++|++.|++..... +... ....+....++
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------------------------~~~~-~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-----------------------------EKVL-GKDHPDVAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-----------------------------HHHH-CTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-----------------------------HHhc-CCCChHHHHHH
Confidence 11223344455555555566666555555543210 0000 00111123456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKS------QMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
..++..+...|++++|.+.++++... +.......++..++..+...|++++|++.++++..
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66667777777777777777766543 11112344566677777777777777777777664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-12 Score=118.96 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-----CHHH
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYP----NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP-----DALT 276 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~ 276 (521)
...+..+...|++++|...|++..+.....+ ...++..++..|...|++++|+..+++..+.....+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3345556677777777777777654321112 234566667777777777777777766654311111 1334
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC----CC-CCcchHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMKNNG----CN-PNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN-----FLLKPDTIG 346 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~ 346 (521)
++.+..+|...|++++|.+.+++..+.. -+ ....++..++.+|...|++++|...+++... .... ...+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence 5566666666666666666666555421 00 0112344445555555555555555544433 1111 1333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 347 YTTLINCFCRAGRVDEALELLKEMK 371 (521)
Q Consensus 347 ~~~l~~~~~~~~~~~~A~~~~~~~~ 371 (521)
+..+...|.+.|++++|...+++..
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444444444444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-11 Score=114.48 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSY---PNLITYSTLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
++..+...+...|++++|...+++........ ....++..+...+...|++++|...+++..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555555666666666555554332210 012344455555555555555555555554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-12 Score=126.61 Aligned_cols=165 Identities=16% Similarity=0.138 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
+..+++.|..+|.+.|++++|++.|++..+..+ .+..+|..++.+|.+.|++++|++.|+++++.+ +-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 345666666677777777777777776666655 456666666667777777777777777666653 3445666666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP-DTIGYTTLINCFCRAGR 359 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 359 (521)
..+|...|++++|++.|++.++.. +.+..++..+..+|...|++++|++.|+++.+. .| +...+..+..+|...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhccc
Confidence 666777777777777776666654 445566666666777777777777777666653 23 35666666666666777
Q ss_pred HHHHHHHHHHHHH
Q 009977 360 VDEALELLKEMKE 372 (521)
Q Consensus 360 ~~~A~~~~~~~~~ 372 (521)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-12 Score=127.60 Aligned_cols=162 Identities=17% Similarity=0.086 Sum_probs=79.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 009977 309 VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP-DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILG 387 (521)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 387 (521)
..+++.|..+|.+.|++++|++.|+++.+. .| +..+|..+..+|.+.|++++|+..|++.++.... +..+|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 344555555555555555555555555442 22 2444555555555555555555555555544322 3444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 009977 388 GLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAE 466 (521)
Q Consensus 388 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 466 (521)
+|...|++++|++.|+++.+.... +...|..+..+|...|++++|++.|+++++ +.| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence 555555555555555555444322 344445555555555555555555555543 233 3444444555555555555
Q ss_pred HHHHHHHHHH
Q 009977 467 DAAIALFGLV 476 (521)
Q Consensus 467 ~a~~~~~~~~ 476 (521)
+|.+.+++++
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-12 Score=103.63 Aligned_cols=169 Identities=15% Similarity=0.064 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 009977 345 IGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFS 424 (521)
Q Consensus 345 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (521)
..+..+...+...|++++|+..++++.+.... +...+..+...+...|++++|...++++...... +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34455556666667777777666666554322 4556666666677777777777777766655322 455666666777
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHH
Q 009977 425 CQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAF 504 (521)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 504 (521)
...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777653 23356666677777777777777777777776653 334567777777777788888888
Q ss_pred HHHHHHHHcCccC
Q 009977 505 ELLDELVIKESGT 517 (521)
Q Consensus 505 ~~~~~m~~~~~~~ 517 (521)
+.++++.+..|++
T Consensus 165 ~~~~~~~~~~~~~ 177 (186)
T 3as5_A 165 PHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCc
Confidence 8888777765543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-11 Score=106.16 Aligned_cols=200 Identities=14% Similarity=0.004 Sum_probs=158.4
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 009977 307 PNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIIL 386 (521)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 386 (521)
.++..+...+..+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888899999999999999999999988654367778878999999999999999999999987654 677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCccCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 009977 387 GGLCREGKIEEALGMLEKLWYDGIYLNK-------ASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH---YATSNELL 456 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~ 456 (521)
..|...|++++|...+++..+..+. +. ..|..+...+...|++++|+..|+++++ ..|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 9999999999999999999886443 44 4577788888999999999999999985 4665 56677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 457 VRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 457 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
.++...| ...++++...+ ..+...+.... ....+.+++|...+++.++.+|++.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 7776554 34455555543 33444444433 3457889999999999999988764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-11 Score=101.00 Aligned_cols=22 Identities=0% Similarity=0.063 Sum_probs=9.2
Q ss_pred HHHHHHHccCcHHHHHHHHHhh
Q 009977 135 NLMKHFSNCSLHERVLEMFHKI 156 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~ 156 (521)
.+...+...|++++|++.|+++
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~ 34 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQV 34 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHH
Confidence 3333444444444444444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.3e-11 Score=103.48 Aligned_cols=131 Identities=14% Similarity=0.065 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
..+...+..+...|++++|...|++..+..+. ++...+..++.++...|++++|++.|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHHHH
Confidence 44444444444455555555555544444331 233344444444555555555555555544431 223344444444
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNV-------FNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
++...|++++|+..+++..+.. +.+. .+|..+...+...|++++|++.|+++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 4555555555555555444432 2222 2344444555555555555555555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-11 Score=106.93 Aligned_cols=159 Identities=11% Similarity=-0.036 Sum_probs=77.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHc----CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHH
Q 009977 283 GFCRGGKVDRAKKIMEFMKNN----GCNP-NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PD----TIGYTTLIN 352 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~ 352 (521)
.|...|++++|...|.+..+. |-++ ...++..+..+|...|++++|+..+++..+.... .+ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666655542 1111 1335556666666666666666666655431100 01 234455555
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCC-c----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCH------HHHHHH
Q 009977 353 CFCRA-GRVDEALELLKEMKERGCKA-D----IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNK------ASYRIV 420 (521)
Q Consensus 353 ~~~~~-~~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l 420 (521)
.|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|+++......... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 55553 55555555555554431100 0 223445555555555555555555555554222111 133444
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 009977 421 LNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~ 441 (521)
..++...|++++|...|++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-11 Score=108.97 Aligned_cols=166 Identities=11% Similarity=0.028 Sum_probs=86.7
Q ss_pred hcCChHHHHHHHHHhhhC------CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhcc-------CCcCHHHHHHHH
Q 009977 71 CEKEPQCALEIFNTVSEQ------KGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYET-------CKFHEGIFLNLM 137 (521)
Q Consensus 71 ~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~ 137 (521)
..|++++|+.+|++++.. ...+....++..+..++...|++++|...+++..+.. .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345555555555554331 1112234567777777777788888887777776541 122344566667
Q ss_pred HHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC
Q 009977 138 KHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT 217 (521)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 217 (521)
..|...|++++|++.|++..... +... ....+....++..++..|...|+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~-----------------------------~~~~-~~~~~~~~~~~~~la~~~~~~g~ 142 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIR-----------------------------EKVL-GKFHPDVAKQLNNLALLCQNQGK 142 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH-----------------------------HHHH-CTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhccHHHHHHHHHHHHHHH-----------------------------HHHc-CCCChHHHHHHHHHHHHHHHcCC
Confidence 77777777777777776654311 0000 00011123345555555555555
Q ss_pred hHHHHHHHHHHHhC-----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 218 LESAFEVLKEMKKS-----QM-SYPNLITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 218 ~~~A~~~~~~~~~~-----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
+++|...++++.+. +. ......++..++..+...|++++|+.+++++.+
T Consensus 143 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555443 00 001234455555556666666666666655543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-11 Score=107.64 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 414 KASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
..++..+...|...|++++|..+++++++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777777777777777777664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-10 Score=100.33 Aligned_cols=102 Identities=12% Similarity=0.036 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-HHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN-LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD-ALTYNV 279 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ 279 (521)
...+..++..+.+.|++++|...|+++.+..+..+. ...+..++.++...|++++|+..|+++++..+..|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 344444555555555555555555555554432110 344555555555555555555555555544221111 233444
Q ss_pred HHHHHHh--------CCCHHHHHHHHHHHHHc
Q 009977 280 LIDGFCR--------GGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 280 l~~~~~~--------~~~~~~a~~~~~~~~~~ 303 (521)
+..++.. .|++++|+..|+++++.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4555555 55555555555555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-10 Score=104.29 Aligned_cols=200 Identities=10% Similarity=0.022 Sum_probs=95.8
Q ss_pred HHHHhcCCchHHHHHHHHhhhcc----CCc-CHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHH
Q 009977 103 DKLARYKKFEAVDAVLRQMTYET----CKF-HEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLI 177 (521)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 177 (521)
..|...|++++|...|++..+.. -++ ...++..+..+|...|++++|+..|++........
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-------------- 110 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-------------- 110 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------------
Confidence 34556677777777776665431 111 13456666666777777777776666554221111
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcC
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR-GTLESAFEVLKEMKKSQMSYPN----LITYSTLIDGLCKNG 252 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 252 (521)
|+... -..+++.+..+|... |++++|+..|++..+..+...+ ..++..++..+...|
T Consensus 111 --g~~~~----------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 172 (292)
T 1qqe_A 111 --GQFRR----------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172 (292)
T ss_dssp --TCHHH----------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --CCHHH----------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC
Confidence 11100 022444455555553 5555555555554433211011 234555555555666
Q ss_pred ChHHHHHHHHHHHhcCCCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc------chHHHHHHHHH-
Q 009977 253 RFREAIELFEEMVSKDQILPDA-----LTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNV------FNYTTLMNGFC- 320 (521)
Q Consensus 253 ~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~- 320 (521)
++++|+..|++........+.. ..+..+..++...|++++|...|++..+.. |+. ..+..++..+.
T Consensus 173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNE 250 (292)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHc
Confidence 6666666665555432111111 134455555555566666666665555421 111 01223334343
Q ss_pred -hcCCHHHHHHHHHHHH
Q 009977 321 -KEGKLQEAKEVFDEMK 336 (521)
Q Consensus 321 -~~~~~~~A~~~~~~~~ 336 (521)
..+++++|+..|+.+.
T Consensus 251 ~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 251 GDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp TCTTTHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHhccCC
Confidence 3445666666665544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-08 Score=96.50 Aligned_cols=204 Identities=13% Similarity=0.052 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEM 370 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 370 (521)
+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++.... +.+...|. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 44667777777653 556667777777777888888888888887775 22222222 12222111221 2222
Q ss_pred HHcC------------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc-CCCHHHHHHHH
Q 009977 371 KERG------------CKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ-KGELEKAIELL 437 (521)
Q Consensus 371 ~~~~------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~ 437 (521)
.+.- .......|...+..+.+.++.+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2110 0011245666666666778899999999988 32 22344455433322222 33699999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Q 009977 438 RLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 438 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 512 (521)
+.+++. ..-++..+...++.....|+.+.|..+|+++. .....|...++.-...|+.+.+..+++++.+
T Consensus 344 e~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 998864 22245566667777788999999999998862 2467788888777778999999999998885
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-09 Score=96.85 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYP-NLITYSTLIDGLCKN----------GRFREAIELFEEMVSK 267 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 267 (521)
..++..|.+.|++++|+..|+++.+..+..+ ....+..++.+|... |++++|+..|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4445555566666666666666555443211 233445555555544 5555566666555554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.24 E-value=6e-09 Score=91.68 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=22.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 243 TLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
.++.++...|++++|++++.+.+..+...-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444444444444444433221101223333333444444444444444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-10 Score=94.99 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=36.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK 321 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (521)
++.++...|++++|+..|++.++.+ +.+...+..+..++...|++++|+..|+++++.. +.+..++..+..+|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4445555555555555555554442 3344445555555555555555555555555443 3334444444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-08 Score=88.54 Aligned_cols=179 Identities=13% Similarity=0.039 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PDTIGYTTLINCFCRAGRVDEALELLKEMK 371 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 371 (521)
|+..+++..+.+ .++..++..++.++...|++++|++++.+....+.. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444433 233333444555555555555555555554433221 124444455555555555555555555554
Q ss_pred HcCCCC-----cHhHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 372 ERGCKA-----DIVTFNIILGG--LCREG--KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 372 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
+. .| +..+...++.+ ....| ++.+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 22 13333333333 22222 555555555555443 22222222222345555555555555554432
Q ss_pred C-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 443 R-----GF---LP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 443 ~-----~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
. +. .| ++.++..++......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 1 00 12 44444344444444454 555555555554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-08 Score=90.22 Aligned_cols=216 Identities=12% Similarity=0.022 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH----HhC---CC
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG--RFREAIELFEEMVSKDQILPDALTYNVLIDGF----CRG---GK 289 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 289 (521)
++|++.++.+...+| .+..+|+.-..++...| ++++++++++.++..+ +-+..+|+.-...+ ... ++
T Consensus 50 ~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCC
Confidence 345555555544444 34444444444444444 4555555555444432 22223333322222 222 34
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HH
Q 009977 290 VDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQ--EAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR------VD 361 (521)
Q Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 361 (521)
+++++++++.+.+.. +.+..+|+.-..++.+.|.++ ++++.++++.+..+. +..+|+.....+...+. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 444444444444433 333334433333333444433 444444444443221 33444433333333333 44
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CccCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 009977 362 EALELLKEMKERGCKADIVTFNIILGGLCREGKIEE-ALGMLEKLWYDG--IYLNKASYRIVLNFSCQKGELEKAIELLR 438 (521)
Q Consensus 362 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (521)
++++.+++++...+. |...|+.+...+.+.|+..+ +..+..++...+ -..+...+..++..|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 555555555444433 44445444444444443222 222333332211 01134444445555555555555555555
Q ss_pred HHH
Q 009977 439 LML 441 (521)
Q Consensus 439 ~~~ 441 (521)
.+.
T Consensus 283 ~l~ 285 (306)
T 3dra_A 283 LLK 285 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-09 Score=93.07 Aligned_cols=74 Identities=9% Similarity=0.072 Sum_probs=35.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLC 390 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (521)
+..+|.+.|++++|+..|++..+... .+...+..+..+|...|++++|+..|+++.+..+. +..++..+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 44445555555555555555444221 13444445555555555555555555555544332 3444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-09 Score=85.38 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 205 FNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 205 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
+..++..+...|++++|..+++++.+..+ .+...+..++..+...|++++|...++++.... +.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 34444555555555555555555544433 344445555555555555555555555554432 23344444455555
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 285 CRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
...|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 55555555555555554432 2233344444444555555555555544443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-09 Score=85.43 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
.+..++..+...|++++|..+++++...+.. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3445555666666666666666666554322 44555566666666666666666666666432 224555666666777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 461 KAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 461 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
..|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++.+.+|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7777777777777766543 234566667777777777777777777777776554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-09 Score=92.21 Aligned_cols=191 Identities=10% Similarity=0.009 Sum_probs=123.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH--hHHH
Q 009977 308 NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK-PD-TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADI--VTFN 383 (521)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~ 383 (521)
+...+..++..+...|++++|+..|+++.+.... +. ...+..+..+|.+.|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666778888889999999999888764322 11 356777888888889999999999888876433111 2444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-H------------
Q 009977 384 IILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHY-A------------ 450 (521)
Q Consensus 384 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~------------ 450 (521)
.+..++...|.. .+ ..|..+...+...|++++|+..|+++++. .|+. .
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence 455555442210 00 00111112222344455555555555432 2211 1
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCcc
Q 009977 451 -----TSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES----DSWALLVELICRGRKLLFAFELLDELVIKESGTIQ 519 (521)
Q Consensus 451 -----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 519 (521)
....+...+.+.|++++|...|+++++. .|+. ..+..++.++.+.|++++|.+.++++...+|.+++
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1124567788999999999999999875 3443 56888999999999999999999999999988765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-10 Score=115.18 Aligned_cols=174 Identities=10% Similarity=-0.073 Sum_probs=120.3
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 213 CKRGTLESAFEVLKEMK--------KSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
...|++++|++.+++.. +..+ .+...|..++.++...|++++|++.|+++.+.+ +.+...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHH
Confidence 66777888888888777 4444 456677777777788888888888888777653 45667777777777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009977 285 CRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEAL 364 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 364 (521)
...|++++|++.|+++++.. +.+...+..+..+|.+.|++++ ++.|+++.+... .+...|..+..++.+.|++++|+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHH
Confidence 78888888888888777764 4456677777777778888877 777777776432 24667777777777788888888
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 009977 365 ELLKEMKERGCKADIVTFNIILGGLCREGK 394 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (521)
..|+++.+.+.. +...+..+..++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 777777665432 34566666666655443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-08 Score=94.79 Aligned_cols=358 Identities=9% Similarity=-0.006 Sum_probs=204.6
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC-chHHHHHHHHhhhc-cC-CcCHHHHHHHHHHHH----ccCc
Q 009977 73 KEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKK-FEAVDAVLRQMTYE-TC-KFHEGIFLNLMKHFS----NCSL 145 (521)
Q Consensus 73 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~ 145 (521)
++++.+..+|++++.. .|+...|...+....+.+. .+....+|+..+.. |. +.+...|...+..+. ..|+
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 7788888888887643 3577777777776666653 34566677766653 21 235566666666544 2356
Q ss_pred HHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 009977 146 HERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVL 225 (521)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 225 (521)
.+.+.++|++... .+...-...|...... ........+..++... .+.+..|..++
T Consensus 105 ~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~----------------------~~~y~~ar~~y 160 (493)
T 2uy1_A 105 IEKIRNGYMRALQ-TPMGSLSELWKDFENF-ELELNKITGKKIVGDT----------------------LPIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHHT-SCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH----------------------hHHHHHHHHHH
Confidence 7777777777753 1111111111111111 1111111222222111 12233444444
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009977 226 KEMKKSQMSYPNLITYSTLIDGLCKNG--R-----FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIME 298 (521)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (521)
+.+...-.. .+...|...+.--...+ - .+.+..+|++++.. .+.+...|...+..+.+.|+.++|..+++
T Consensus 161 ~~~~~~~~~-~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~e 237 (493)
T 2uy1_A 161 QQIQPLIRG-WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVE 237 (493)
T ss_dssp HHHHHHHHT-CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhh-ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444321110 23445655554422211 1 34567788888775 35567778888888888899999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 009977 299 FMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFL---------LKP---DTIGYTTLINCFCRAGRVDEALEL 366 (521)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 366 (521)
+.... +.+...+. .|....+.++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+
T Consensus 238 rAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i 308 (493)
T 2uy1_A 238 RGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKL 308 (493)
T ss_dssp HHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98887 33332222 22221111111 22222110 001 134566667777778889999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 009977 367 LKEMKERGCKADIVTFNIILGGLCREG-KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGF 445 (521)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (521)
|+.+ .. ...+...|...+..-...+ +.+.|..+|+...+.-.. ++..+...+......|+.+.|..+|+.+.
T Consensus 309 ~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~---- 381 (493)
T 2uy1_A 309 FIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE---- 381 (493)
T ss_dssp HHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC----
T ss_pred HHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----
Confidence 9998 32 1223444443333222333 699999999998875322 34556667777788899999999999973
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 446 LPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 446 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
.....|...+..-...|+.+.+..++++..+
T Consensus 382 -k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 -KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2567788888777888999999998888763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-08 Score=87.69 Aligned_cols=233 Identities=9% Similarity=-0.009 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----Hhc--
Q 009977 180 NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG--TLESAFEVLKEMKKSQMSYPNLITYSTLIDGL----CKN-- 251 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 251 (521)
...++|+.++..++.. .+.+..+|+.-..++...| +++++++.++.+...++ .+..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--k~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--KNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT--TCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHhccc
Confidence 3446788888877642 2334667888888888888 88889998888888877 4666676655555 444
Q ss_pred -CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC----
Q 009977 252 -GRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVD--RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK---- 324 (521)
Q Consensus 252 -g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 324 (521)
+++++++++++++.+.+ +-+..+|+.-.-.+.+.|.++ ++++.++.+++.. +-|..+|+.-...+...+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 77888888888888764 667788888777777888877 8888888888876 5577777777767777666
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHH
Q 009977 325 --LQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDE-ALELLKEMKERG--CKADIVTFNIILGGLCREGKIEEAL 399 (521)
Q Consensus 325 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 399 (521)
++++++.++.+....+ -|...|+.+...+.+.|+..+ +..+..++.+.+ ...+...+..++..|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 8888888888877543 368888888888888777444 445666655433 1236678888888999999999999
Q ss_pred HHHHHHHHC-CCccCHHHHHHHH
Q 009977 400 GMLEKLWYD-GIYLNKASYRIVL 421 (521)
Q Consensus 400 ~~~~~~~~~-~~~~~~~~~~~l~ 421 (521)
++++.+.+. ++ .....|+..+
T Consensus 279 ~~~~~l~~~~Dp-ir~~yW~~~~ 300 (306)
T 3dra_A 279 TVYDLLKSKYNP-IRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHTTCG-GGHHHHHHHH
T ss_pred HHHHHHHhccCh-HHHHHHHHHH
Confidence 999998863 22 2444555433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-10 Score=114.63 Aligned_cols=169 Identities=8% Similarity=-0.079 Sum_probs=86.5
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 009977 320 CKEGKLQEAKEVFDEMK--------NFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCR 391 (521)
Q Consensus 320 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (521)
...|++++|++.++++. +.. ..+...+..+...|...|++++|+..|+++.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 44555555555555554 211 112444555555555555555555555555554332 44455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 009977 392 EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAI 470 (521)
Q Consensus 392 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 470 (521)
.|++++|.+.|+++.+..+. +...+..+..++...|++++ ++.|+++++. .| +...+..+..++.+.|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555554322 34455555555555555555 5555555532 33 44455555555555555555555
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHc
Q 009977 471 ALFGLVEMGFKPES-DSWALLVELICR 496 (521)
Q Consensus 471 ~~~~~~~~~~~~~~-~~~~~l~~~~~~ 496 (521)
.|+++.+. .|+. ..+..+..++..
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC-
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHc
Confidence 55555443 2332 444444444433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.17 E-value=6.9e-09 Score=89.18 Aligned_cols=62 Identities=5% Similarity=-0.012 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009977 349 TLINCFCRAGRVDEALELLKEMKERGCKAD--IVTFNIILGGLCREGKIEEALGMLEKLWYDGI 410 (521)
Q Consensus 349 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 410 (521)
.+...|.+.|++++|+..|+++.+..+... ...+..+..+|.+.|+.++|.+.++.+...++
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 455677788888888888888887643211 24677788888888888888888888777643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-09 Score=96.73 Aligned_cols=165 Identities=12% Similarity=0.031 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHH-HH
Q 009977 94 NNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIS-TC 172 (521)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~l 172 (521)
+...+..+...+...|++++|...|++..+.. |.+...+..+...+...|++++|++.++++... .|+..... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 33445555555555666666666666655554 344555555566666666666666666555421 22222111 11
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
...+...++.++|...+++.... .+.+...+..+...+...|++++|.+.|.++.+..+...+...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 12233344444444444444331 2233444555555555555555555555555444432222444444555555555
Q ss_pred ChHHHHHHHHHH
Q 009977 253 RFREAIELFEEM 264 (521)
Q Consensus 253 ~~~~A~~~~~~~ 264 (521)
+.++|...|++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555554444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-09 Score=89.63 Aligned_cols=161 Identities=14% Similarity=0.044 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHH-HH
Q 009977 99 ATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNL-LI 177 (521)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 177 (521)
..+...+...|++++|...+++..+.. |.+...+..+...+...|++++|+..|+++.... |+.......... +.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHHH
Confidence 344555566666666666666666554 4455566666666666666666666666654322 122222111111 11
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
..++...|...++++++. .+.+...+..+...+...|++++|...|+++.+..+...+...+..++.++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 111122344455554431 222455566666666666666666666666665554322344555566666666666666
Q ss_pred HHHHHHHH
Q 009977 258 IELFEEMV 265 (521)
Q Consensus 258 ~~~~~~~~ 265 (521)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-10 Score=89.41 Aligned_cols=144 Identities=13% Similarity=0.010 Sum_probs=70.2
Q ss_pred HHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
..++...|++++|++.+++... ..+.+...+..+..+|.+.|++++|...|+++++. .+.+..+|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3444555666666666665532 11112223444555555555555555555555432 1224455555555555555
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 217 TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIEL-FEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
++++|...|++..+..+ .+..+|..++..+.+.|++++|.+. ++++.+.. |-++..|......+...|
T Consensus 80 ~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 55555555555555544 3455555555555555555544433 34554432 333444444444444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-10 Score=91.39 Aligned_cols=141 Identities=11% Similarity=-0.060 Sum_probs=86.3
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009977 175 LLIESNQVDLAQNFLKYSNQHLRLKP-NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR 253 (521)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (521)
++...|++++|+..++.... ..| +...+..+...|.+.|++++|.+.|++..+..+ .+..+|..++.++...|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCc
Confidence 34445666777766666542 223 233555667777777777777777777766665 466677777777777777
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHcCCCCCcchHHHHHHHHHhcC
Q 009977 254 FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKI-MEFMKNNGCNPNVFNYTTLMNGFCKEG 323 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 323 (521)
+++|+..|++.++.+ +-+...+..+...|.+.|++++|.+. ++++++.. |.++.+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 777777777776653 34556666677777777766554443 46666553 445555555555555544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.6e-10 Score=90.80 Aligned_cols=163 Identities=14% Similarity=0.112 Sum_probs=93.5
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHH
Q 009977 132 IFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKH 211 (521)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 211 (521)
.+......+...|++++|+..|++.... .+.+...+..+..++...|++++|...++.+... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 3445666677777777777777776532 2344556666667777777777777777666432 2233333222211
Q ss_pred -HHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH
Q 009977 212 -HCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV 290 (521)
Q Consensus 212 -~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (521)
+...+...+|...+++..+..| .+...+..+..++...|++++|+..|+++++..+...+...+..+..++...|+.
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANP--DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHhhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 1122233345666666666554 3556666666666666666666666666665432222344566666666666666
Q ss_pred HHHHHHHHHHH
Q 009977 291 DRAKKIMEFMK 301 (521)
Q Consensus 291 ~~a~~~~~~~~ 301 (521)
++|...|++.+
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 66666666544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-09 Score=96.66 Aligned_cols=163 Identities=14% Similarity=0.040 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHH-HHHH
Q 009977 130 EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCI-FNIL 208 (521)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l 208 (521)
...+..+...+...|++++|+..|++.... .+.+..++..+..++...|++++|...++.+... .|+... ....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 344445555555555555555555554421 1223344444455555555555555555444321 222221 1112
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
...+...++.++|...+++.....| .+...+..+...+...|++++|+..|++++...+-..+...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2223344444445555555444443 34444445555555555555555555555443211112334444444444445
Q ss_pred CHHHHHHHHHH
Q 009977 289 KVDRAKKIMEF 299 (521)
Q Consensus 289 ~~~~a~~~~~~ 299 (521)
+.++|...|++
T Consensus 270 ~~~~a~~~~r~ 280 (287)
T 3qou_A 270 TGDALASXYRR 280 (287)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 44444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-08 Score=85.59 Aligned_cols=140 Identities=14% Similarity=0.036 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAG----RVDEALELLK 368 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~ 368 (521)
|++.|++..+.| ++..+..+...|...+++++|...|++..+.+ +...+..+...|.. + ++++|+..|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555554432 44445555555555555555555555554432 34444444444444 3 4555555555
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHc----CCCHHHHHHHHHH
Q 009977 369 EMKERGCKADIVTFNIILGGLCR----EGKIEEALGMLEKLWYDGIY-LNKASYRIVLNFSCQ----KGELEKAIELLRL 439 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 439 (521)
+..+.+ +..++..+...|.. .+++++|..+|++..+.+.. .++..+..|...|.. .+++++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554443 33444444444443 44555555555554443321 013344444444444 4445555555555
Q ss_pred HHH
Q 009977 440 MLC 442 (521)
Q Consensus 440 ~~~ 442 (521)
..+
T Consensus 155 A~~ 157 (212)
T 3rjv_A 155 SSS 157 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-09 Score=107.20 Aligned_cols=153 Identities=10% Similarity=-0.069 Sum_probs=113.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 009977 322 EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGM 401 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 401 (521)
.|++++|.+.++++.+... .+...+..+...|...|++++|+..+++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788899999988876422 24788888888999999999999999999887544 677888899999999999999999
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 009977 402 LEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKA---GMAEDAAIALFGLVE 477 (521)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 477 (521)
+++..+.... +...+..+..+|...|++++|.+.++++.+. .| +...+..+...+... |++++|...++++++
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998887543 6778888889999999999999999998864 44 677888888889888 999999999999887
Q ss_pred CC
Q 009977 478 MG 479 (521)
Q Consensus 478 ~~ 479 (521)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.4e-09 Score=87.64 Aligned_cols=176 Identities=13% Similarity=0.045 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC----CHHHHHHH
Q 009977 256 EAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEG----KLQEAKEV 331 (521)
Q Consensus 256 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~ 331 (521)
+|++.|++..+.+ +...+..+...|...+++++|+++|++..+.| ++..+..|...|.. + ++++|...
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4555666665442 45556666666666666666666666666544 44555556666655 4 66666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CcHhHHHHHHHHHHh----cCCHHHHHHHH
Q 009977 332 FDEMKNFLLKPDTIGYTTLINCFCR----AGRVDEALELLKEMKERGCK-ADIVTFNIILGGLCR----EGKIEEALGML 402 (521)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~ 402 (521)
|++..+.+ +...+..+...|.. .+++++|+..|++..+.+.. .+..++..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66665532 45555555555554 55666666666666655421 014555566666665 55666666666
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHcC-C-----CHHHHHHHHHHHHHCC
Q 009977 403 EKLWYDGIYLNKASYRIVLNFSCQK-G-----ELEKAIELLRLMLCRG 444 (521)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 444 (521)
++..+.+ .+...+..|...|... | ++++|...|++..+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6665541 1333444455544432 2 5666666666665544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6.3e-09 Score=103.12 Aligned_cols=154 Identities=9% Similarity=-0.098 Sum_probs=87.5
Q ss_pred cCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 009977 108 YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQN 187 (521)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 187 (521)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|++.|++... ..+.+..++..+..++...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 356677777777776654 44566666777777777777777777777653 223345566666666677777777777
Q ss_pred HHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHH
Q 009977 188 FLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN---GRFREAIELFEEM 264 (521)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 264 (521)
.++++++. .+.+...+..+..+|.+.|++++|.+.|++..+..+ .+...+..+..++... |++++|.+.+++.
T Consensus 79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77666542 233455666667777777777777777777666554 4556666666666666 6677777777766
Q ss_pred HhcC
Q 009977 265 VSKD 268 (521)
Q Consensus 265 ~~~~ 268 (521)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 6653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-08 Score=91.65 Aligned_cols=165 Identities=13% Similarity=0.018 Sum_probs=88.3
Q ss_pred cCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHH
Q 009977 143 CSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIE-SNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESA 221 (521)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 221 (521)
.|++++|.+++++...... .. +.. .+++++|...|.++ +..|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~----------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS----------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC----------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc----------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHH
Confidence 4677777777776643211 10 111 35666666665543 4566777888888
Q ss_pred HHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--C--CHHHHHHHHHHHHhCCCHHHH
Q 009977 222 FEVLKEMKKSQMSYP----NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQIL--P--DALTYNVLIDGFCRGGKVDRA 293 (521)
Q Consensus 222 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a 293 (521)
...|.+......... -..+|+.++..|...|++++|+..|++.+...... + ...++..+..+|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 887777654321101 13466677777777777777777777765431000 1 12345555555555 666666
Q ss_pred HHHHHHHHHcCCCC-----CcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 294 KKIMEFMKNNGCNP-----NVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 294 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
+..|++.++..... ...++..+..+|...|++++|+..|++..
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666555421000 02234444445555555555555554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-09 Score=94.80 Aligned_cols=229 Identities=10% Similarity=0.022 Sum_probs=127.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-cCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHH
Q 009977 72 EKEPQCALEIFNTVSEQKGFNHNNATYATILDKLAR-YKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVL 150 (521)
Q Consensus 72 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 150 (521)
.|++++|.++++++.+... .. +.+ .+++++|...|++. +..|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 4677888888887643211 00 011 34555555555443 23445556666666
Q ss_pred HHHHhhccccCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHhhhc---CCCCC-cHHHHHHHHHHHHhcCChHHHH
Q 009977 151 EMFHKIHPITREKPS----LKAISTCLNLLIESNQVDLAQNFLKYSNQH---LRLKP-NTCIFNILIKHHCKRGTLESAF 222 (521)
Q Consensus 151 ~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 222 (521)
+.|.+.........+ ..++..+..+|...|++++|...+++.++- .+... ...+++.+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 655554322111111 234555566666666666666666655432 11111 13466777777777 8888888
Q ss_pred HHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCCC-HHHHHHHHHHHHhCCCHHHHH
Q 009977 223 EVLKEMKKSQMSYP----NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ---ILPD-ALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 223 ~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~-~~~~~~l~~~~~~~~~~~~a~ 294 (521)
..|++......... ...++..+...+...|++++|+..|++...... ..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777654322101 145677778888888888888888877765311 1111 235666667777778888888
Q ss_pred HHHHHHHHcCCCC--Cc---chHHHHHHHHHhcCCHHHHHHH
Q 009977 295 KIMEFMKNNGCNP--NV---FNYTTLMNGFCKEGKLQEAKEV 331 (521)
Q Consensus 295 ~~~~~~~~~~~~~--~~---~~~~~l~~~~~~~~~~~~A~~~ 331 (521)
..|++.. .. +. +. .....++..+ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 8888777 42 21 11 1233444444 56776666553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.4e-07 Score=81.57 Aligned_cols=80 Identities=9% Similarity=0.056 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-C-ChHHHHH
Q 009977 183 DLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG-TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN-G-RFREAIE 259 (521)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~ 259 (521)
++|+++++.++.. .+.+..+|+.-..++...| .+++++++++.+....+ .+..+|+.-...+... + +++++++
T Consensus 71 e~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 71 ERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4455555544431 1223334444444444444 24555555555554444 3444444444444443 3 4445555
Q ss_pred HHHHHHh
Q 009977 260 LFEEMVS 266 (521)
Q Consensus 260 ~~~~~~~ 266 (521)
+++++++
T Consensus 147 ~~~k~L~ 153 (349)
T 3q7a_A 147 YIHGSLL 153 (349)
T ss_dssp HHHHHTS
T ss_pred HHHHHHH
Confidence 5555444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-07 Score=84.55 Aligned_cols=163 Identities=12% Similarity=0.058 Sum_probs=82.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC----HHHHHHH
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNT----CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN----LITYSTL 244 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l 244 (521)
+..+...|++++|..++++..+.....|+. ..+..+...+...|++++|+..|++.........+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445555666666666666655432222331 12334555555666666666666666653322122 2346666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCC-cchHHH
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKD----QILP-DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG----CNPN-VFNYTT 314 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~ 314 (521)
+..|...|++++|+..|+++++.. +..+ ...++..+...|.+.|++++|...+++.++.. ..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 666666666666666666665310 0111 12245556666666666666666665554321 0111 234455
Q ss_pred HHHHHHhcC-CHHHHHHHHHHH
Q 009977 315 LMNGFCKEG-KLQEAKEVFDEM 335 (521)
Q Consensus 315 l~~~~~~~~-~~~~A~~~~~~~ 335 (521)
++.+|.+.| ++++|.+.++++
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 555555555 345555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.3e-07 Score=80.13 Aligned_cols=166 Identities=10% Similarity=0.030 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC-C-CHHHHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG-RFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG-G-KVDRAKK 295 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~ 295 (521)
++|+++++++...++ .+..+|+.-...+...| .+++++++++.++..+ +-+..+|+.-...+... + +++++++
T Consensus 71 e~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 71 ERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred HHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 445555555544444 34444444444444444 2455555555554432 33344444444444333 3 4445555
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------H
Q 009977 296 IMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQ--------EAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR-------V 360 (521)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~ 360 (521)
+++.+++.. +.|..+|+.-..++.+.|.++ ++++.++++.+..+. |..+|+.....+.+.+. +
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHH
Confidence 555544433 233334433333333333332 444444444443221 34444444444444333 3
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 009977 361 DEALELLKEMKERGCKADIVTFNIILGGLCR 391 (521)
Q Consensus 361 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (521)
+++++.+++++...+. |...|+.+-..+.+
T Consensus 225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 4455555544444333 44444444333333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-08 Score=75.92 Aligned_cols=98 Identities=17% Similarity=0.055 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
..+...+..|.+.|++++|++.|++..+..+ .+...|..++.++...|++++|+..|++.++.+ +.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHH
Confidence 3555566666666666666666666666555 456666666666666666666666666666553 445556666666
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
++...|++++|++.|++.++..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHHHC
Confidence 6666666666666666666653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-08 Score=90.06 Aligned_cols=193 Identities=12% Similarity=0.009 Sum_probs=89.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 009977 310 FNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGL 389 (521)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (521)
..+..++..+...|++++|+..|+++..... .+...|..+..+|...|++++|+..+++..+.... +...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3444455555555555555555555554311 13455555555555556666666655555554332 445555556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009977 390 CREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAA 469 (521)
Q Consensus 390 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 469 (521)
...|++++|...|+++.+.+.. +...+...+....+ ..++.. +..........+......+... ..|++++|.
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 6666666666666555543111 00001111111110 011111 1112222233333333333222 256667777
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHcc-CcHHHHHHHHHHHHHc
Q 009977 470 IALFGLVEMGFKPESD-SWALLVELICRG-RKLLFAFELLDELVIK 513 (521)
Q Consensus 470 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 513 (521)
+.+++..+. .|+.. ....+...+.+. +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 776666654 34432 223333333333 5666777777766553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.3e-08 Score=81.89 Aligned_cols=124 Identities=13% Similarity=-0.001 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (521)
..+...+...|++++|...|++... ++...|..++..+...|++++|++.|++..... +.+...+..+..++.
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHH
Confidence 3344445555555555555554421 344455555555555555555555555555432 334445555555555
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCc----------------chHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 286 RGGKVDRAKKIMEFMKNNGCNPNV----------------FNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
..|++++|...|++..+.. +.+. ..+..+..+|...|++++|...|+.+.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555555555432 1111 3445555555555566666555555554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-08 Score=90.93 Aligned_cols=195 Identities=8% Similarity=-0.075 Sum_probs=112.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
+...+..++..+.+.|++++|...|++.....+ .+...|..++.++...|++++|+..++++++.. +.+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 445667777777788888888888887777665 467777778888888888888888888877652 4566777777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRV 360 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 360 (521)
..++...|++++|...|++..+.. +.+...+...+....+. .++.. +..........+......+... ..|++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 778888888888888887776643 11211222122221111 11111 1112222223333333333222 25677
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 009977 361 DEALELLKEMKERGCKADIVTFNIILGGLCRE-GKIEEALGMLEKLWY 407 (521)
Q Consensus 361 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 407 (521)
++|++.++...+..+. +......+...+.+. +.++++.++|.++.+
T Consensus 152 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777766654321 222333333333333 456677777776654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-07 Score=84.72 Aligned_cols=164 Identities=12% Similarity=0.069 Sum_probs=76.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC----HHHHHH
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPN----TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN----LITYST 243 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ 243 (521)
.+..+...|++++|...++..++.....++ ...+..+...+...|++++|+..+++.........+ ..+|+.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 344445555555555555544432111111 112333444555566666666666665543221011 335555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh---cCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----C-CcchHH
Q 009977 244 LIDGLCKNGRFREAIELFEEMVS---KDQILP--DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN----P-NVFNYT 313 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~ 313 (521)
++..|...|++++|+..|+++.+ ..+..+ ...++..+...|...|++++|...+++.++.... . -..++.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66666666666666666665552 111111 1135555555566666666666665555432100 0 023444
Q ss_pred HHHHHHHhcCCHHHH-HHHHHHH
Q 009977 314 TLMNGFCKEGKLQEA-KEVFDEM 335 (521)
Q Consensus 314 ~l~~~~~~~~~~~~A-~~~~~~~ 335 (521)
.++.+|...|++++| ...+++.
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Confidence 555555555555555 4444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-07 Score=85.63 Aligned_cols=162 Identities=12% Similarity=0.050 Sum_probs=87.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc-----chHHHH
Q 009977 245 IDGLCKNGRFREAIELFEEMVSKDQILPDAL----TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNV-----FNYTTL 315 (521)
Q Consensus 245 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l 315 (521)
+..+...|++++|.+++++........|+.. .+..+...+...+++++|+..++++.+.....+. .+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666667777776666655432222211 2233455555566667777777666653211111 145666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-cHhHHHH
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKN----F-LLKPD-TIGYTTLINCFCRAGRVDEALELLKEMKER----GCKA-DIVTFNI 384 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ 384 (521)
+.+|...|++++|...|+++.+ . +..+. ..++..+...|...|++++|+..+++..+. +..+ -..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666666666666666666552 1 11111 234556666666666666666666655432 1111 1345566
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHH
Q 009977 385 ILGGLCREG-KIEEALGMLEKLW 406 (521)
Q Consensus 385 l~~~~~~~g-~~~~a~~~~~~~~ 406 (521)
+..+|...| .+++|.+.++++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 666666666 3466666666554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.90 E-value=8.1e-08 Score=77.84 Aligned_cols=127 Identities=13% Similarity=-0.011 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..++..+...|++++|...|++.....+ .+..++..++.++...|++++|+..+++..... +.+...+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 455555666666666666666666665544 355566666666666666666666666665542 3445556666666
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHH--HHHHHHhcCCHHHHHHHHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTT--LMNGFCKEGKLQEAKEVFDEM 335 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~ 335 (521)
+...|++++|...++++.+.. +.+...+.. ++..+...|++++|...+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666665543 223333322 222244455555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-07 Score=81.12 Aligned_cols=190 Identities=9% Similarity=-0.093 Sum_probs=119.9
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHhcCCchHHHHHHHHhhhc------------cC-----
Q 009977 71 CEKEPQCALEIFNTVSEQKGFNHNNATYATI-------LDKLARYKKFEAVDAVLRQMTYE------------TC----- 126 (521)
Q Consensus 71 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~----- 126 (521)
..+++..|++.|.++.... +.....|..+ ..++.+.++..++...+..-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5789999999999987664 4556778877 56666666666666666665541 10
Q ss_pred ---CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc--
Q 009977 127 ---KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN-- 201 (521)
Q Consensus 127 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 201 (521)
.........+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+..... ..|.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~ 170 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLA 170 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccH
Confidence 00123444566677777888888888877753 2343334445555677777777777777654321 0111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQM-SYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
..++..+..++...|++++|+..|++...... +.-....+.....++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566677777777777777777777664321 1013345566666777777777777777777665
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.4e-07 Score=78.68 Aligned_cols=125 Identities=8% Similarity=-0.044 Sum_probs=74.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN 251 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (521)
+...+...|++++|...++++. .|+..++..++..|...|++++|...|++.....+ .+...|..++.++...
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHc
Confidence 3444555556666665555442 34555666666666666666666666666665554 4555666666666666
Q ss_pred CChHHHHHHHHHHHhcCCCCC--------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 252 GRFREAIELFEEMVSKDQILP--------------DALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
|++++|++.|+++.+..+..+ ....+..+..++...|++++|...|+.+.+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666655321111 1255666666677777777777777776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.9e-08 Score=83.43 Aligned_cols=129 Identities=12% Similarity=-0.071 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc
Q 009977 385 ILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKA 462 (521)
Q Consensus 385 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~ 462 (521)
+...+...|++++|.++|+.+...+. +......+...+.+.+++++|+..|+...... .| ....+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 44455555666666666555544332 21133333344555566666666665443211 11 022444455556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 463 GMAEDAAIALFGLVEMGFKPE--SDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 463 g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
|++++|+..|++.......|. .........++.+.|+.++|...|+++...+|+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 666666666665553322132 234445555555666666666666666655543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.3e-08 Score=73.33 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMN 317 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (521)
...+...+..+.+.|++++|++.|++.++.+ +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 89 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 4556677777777888888888887777653 5566777777777777777777777777777765 455667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 009977 318 GFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 318 ~~~~~~~~~~A~~~~~~~~~~ 338 (521)
+|...|++++|.+.|++..+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 777777777777777777663
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-08 Score=74.15 Aligned_cols=117 Identities=11% Similarity=-0.003 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
+...+..++..+...|++++|...|++..+..+ .+...+..++..+...|++++|++.++++.+.. +.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHH
Confidence 455666666666666777777776666666554 355666666666666667777776666666542 3455566666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE 322 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (521)
..++...|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 666666666666666666666543 23334444555544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.6e-08 Score=78.04 Aligned_cols=96 Identities=14% Similarity=0.015 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..+...+.+.|++++|...|++.....| .+...|..++.++...|++++|+..|+++.... |.+...|..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHH
Confidence 444455555555555555555555555444 344455555555555555555555555554442 2233444455555
Q ss_pred HHhCCCHHHHHHHHHHHHHc
Q 009977 284 FCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~ 303 (521)
|...|++++|...|++.++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-07 Score=71.97 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..++..+...|++++|.+.++++....+ .+..++..++..+...|++++|+.+++++.... +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHH
Confidence 34455555555556666666666665555443 344555555555556666666666665555442 33445555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
..+...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 5555555666665555555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-07 Score=84.08 Aligned_cols=171 Identities=7% Similarity=0.023 Sum_probs=117.3
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC--CCCc--HH
Q 009977 132 IFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSL----KAISTCLNLLIESNQVDLAQNFLKYSNQHLR--LKPN--TC 203 (521)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~ 203 (521)
.+...+..+...|++++|++.+++........++. ..+..+...+...|++++|...++++..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44455666777788888877777654322211111 1233345566777888888888887764211 1111 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH---hCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCC-CCH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMK---KSQMSYP--NLITYSTLIDGLCKNGRFREAIELFEEMVSKD---QIL-PDA 274 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~ 274 (521)
+++.++..|...|++++|...|++.. +..+..+ ...++..++..|...|++++|+..+++.+... +.. .-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 88899999999999999999999886 3222111 22578889999999999999999999887531 111 126
Q ss_pred HHHHHHHHHHHhCCCHHHH-HHHHHHHHH
Q 009977 275 LTYNVLIDGFCRGGKVDRA-KKIMEFMKN 302 (521)
Q Consensus 275 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 302 (521)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777877654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-07 Score=76.81 Aligned_cols=128 Identities=13% Similarity=0.053 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDG 247 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (521)
.+..+...+...|++++|...++.+++. .+.+..++..++..+...|++++|...+++..+..+ .+...|..++.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHH
Confidence 3445556666677777777777766542 233566777788888888888888888888877665 467778888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 248 LCKNGRFREAIELFEEMVSKDQILPDALTY--NVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
+...|++++|...|+++.... +.+...+ ...+..+...|++++|...+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888887763 3344444 333444667788888888777654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-06 Score=77.54 Aligned_cols=169 Identities=8% Similarity=0.014 Sum_probs=94.1
Q ss_pred HHhcCChH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCCCcchHHHHH
Q 009977 248 LCKNGRFR-EAIELFEEMVSKDQILPDALTYNVLIDGFCRGGK----------VDRAKKIMEFMKNNGCNPNVFNYTTLM 316 (521)
Q Consensus 248 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 316 (521)
..+.|.++ +|+++++.++..+ |-+...|+.--..+...+. +++++.+++.++... +.+..+|+.-.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34556554 6788888887653 4445556555444443332 456666666666554 44555666555
Q ss_pred HHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-
Q 009977 317 NGFCKEG--KLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR-VDEALELLKEMKERGCKADIVTFNIILGGLCRE- 392 (521)
Q Consensus 317 ~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 392 (521)
.++...+ .+++++.+++.+.+.... +..+|+.-...+...|. ++++++.++.+++..+. |..+|+.....+...
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHS
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhh
Confidence 5555555 366666666666654322 55666655555555565 46666666666666544 555665555554443
Q ss_pred -------------CCHHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 009977 393 -------------GKIEEALGMLEKLWYDGIYLNKASYRIVLN 422 (521)
Q Consensus 393 -------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 422 (521)
+.++++++.+.......+. |...|+.+-.
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ 235 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRW 235 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 2345555555555554333 4444443333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=80.21 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 009977 365 ELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG 444 (521)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (521)
..|+++.+..+. +...+..+...+...|++++|...|+++....+. +...|..+..+|...|++++|+..|++++..
T Consensus 8 ~~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 84 (148)
T 2vgx_A 8 GTIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM- 84 (148)
T ss_dssp CSHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hhHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 345555544321 4556777788888889999999998888876543 6777888888888889999999999888853
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 445 FLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 445 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.| +...+..+..++...|++++|...|++.++.
T Consensus 85 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 -DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44 6677788888888899999999888888765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-07 Score=72.95 Aligned_cols=118 Identities=13% Similarity=0.012 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..++..+...|++++|...|++.....+ .+...+..++..+...|++++|++.+++..... +.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHH
Confidence 34455555555566666666666665555443 345555555555666666666666666555542 33445555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK 324 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 324 (521)
..+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555566666665555555543 2334444444444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.7e-06 Score=73.19 Aligned_cols=149 Identities=9% Similarity=-0.053 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC-HHHHHHH
Q 009977 255 REAIELFEEMVSKDQILPDALTYNVLIDGFCRGG--KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGK-LQEAKEV 331 (521)
Q Consensus 255 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 331 (521)
++++.+++.++..+ +-+..+|+.-...+...+ .+++++.+++.+.+.. +-|..+|+.-..++...|. ++++++.
T Consensus 91 ~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 91 KAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 44444554444432 334444444444444444 2445555555555443 3344444444444444444 3455555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-----
Q 009977 332 FDEMKNFLLKPDTIGYTTLINCFCRA--------------GRVDEALELLKEMKERGCKADIVTFNIILGGLCRE----- 392 (521)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 392 (521)
+..+.+..+. |..+|+.....+... +.++++++.+.......+. |..+|+.+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 5554443222 344444443333332 3356666677666665544 555555444433333
Q ss_pred ------CCHHHHHHHHHHHHHC
Q 009977 393 ------GKIEEALGMLEKLWYD 408 (521)
Q Consensus 393 ------g~~~~a~~~~~~~~~~ 408 (521)
+.++++++.++++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh
Confidence 2345555555555554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.80 E-value=6.4e-08 Score=76.63 Aligned_cols=98 Identities=13% Similarity=0.033 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHH
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLM 316 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 316 (521)
+...+..++..+.+.|++++|+..|+++...+ |.+...|..+..+|...|++++|+..|+++.+.. +.++..+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 44455566666666666666666666666553 4455566666666666666666666666666654 44555666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 009977 317 NGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~~~~ 337 (521)
.+|...|++++|...|+++.+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666655
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.4e-08 Score=80.75 Aligned_cols=157 Identities=11% Similarity=-0.070 Sum_probs=84.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CcHhHHHHHHHHHHhcCC
Q 009977 320 CKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKER----GCK-ADIVTFNIILGGLCREGK 394 (521)
Q Consensus 320 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 394 (521)
...|++++|.++++.+.. ........+..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346777777774444433 11123556666666777777777777777766542 111 123455666666667777
Q ss_pred HHHHHHHHHHHHHC----CCcc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CCC--CHHHHHHHHHHHHhcC
Q 009977 395 IEEALGMLEKLWYD----GIYL--NKASYRIVLNFSCQKGELEKAIELLRLMLCRG---FLP--HYATSNELLVRLCKAG 463 (521)
Q Consensus 395 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~p--~~~~~~~l~~~~~~~g 463 (521)
+++|...+++.... +..+ ....+..+...+...|++++|...+++..+.. -.+ ...++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777776665543 1011 12345555666666666666666666665320 011 1222345555666666
Q ss_pred CHHHHHHHHHHHHH
Q 009977 464 MAEDAAIALFGLVE 477 (521)
Q Consensus 464 ~~~~a~~~~~~~~~ 477 (521)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-08 Score=80.71 Aligned_cols=118 Identities=8% Similarity=0.149 Sum_probs=55.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhCCCH--H
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG-FCRGGKV--D 291 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 291 (521)
.|++++|...+++.....+ .+...|..++..+...|++++|+..|+++.... +.+...+..+..+ +...|++ +
T Consensus 23 ~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred ccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4445555555555444443 344455555555555555555555555554432 2334444444444 4445554 5
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 292 RAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
+|...++.+.+.. +.+...+..++.+|...|++++|...|+++.+
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555555555443 23344444455555555555555555555444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5e-08 Score=77.34 Aligned_cols=98 Identities=12% Similarity=0.042 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..+...+...|++++|...|++.....+ .+...|..+..++...|++++|+..|++++... +.+...+..+.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHH
Confidence 33455555555555555555555555555544 355555555555555555555555555555442 33344455555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.+|...|++++|...|+..++.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-07 Score=78.85 Aligned_cols=156 Identities=11% Similarity=-0.058 Sum_probs=73.8
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCC
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKS----QMSYPNLITYSTLIDGLCKNGR 253 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~ 253 (521)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++.... +.......++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 34555555553333321 11123445666666666666666666666665441 1100223445556666666666
Q ss_pred hHHHHHHHHHHHhc---CCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----cchHHHHHHHHHhcC
Q 009977 254 FREAIELFEEMVSK---DQIL--PDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGC-NPN----VFNYTTLMNGFCKEG 323 (521)
Q Consensus 254 ~~~A~~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~ 323 (521)
+++|++.+++.... .+.. .....+..+...+...|++++|...+++..+... ..+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 66666666655443 1101 1123345555555566666666666655543210 001 112344445555555
Q ss_pred CHHHHHHHHHHH
Q 009977 324 KLQEAKEVFDEM 335 (521)
Q Consensus 324 ~~~~A~~~~~~~ 335 (521)
++++|...+++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-07 Score=84.54 Aligned_cols=131 Identities=15% Similarity=0.004 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN-------------LITYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
...+..+...|.+.|++++|...|++.....+..++ ..+|..+..++.+.|++++|+..|+++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345566666666666666666666666665542110 4566666666666777777777776666653
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH-HHHHHHH
Q 009977 269 QILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEA-KEVFDEM 335 (521)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~ 335 (521)
+.+...+..+..+|...|++++|+..|+++++.. +.+..++..+..++...|+.++| ...+..|
T Consensus 227 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 --SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666654 34455666666666666666665 2344443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.74 E-value=2.4e-07 Score=84.75 Aligned_cols=122 Identities=11% Similarity=-0.021 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKAD--------------IVTFNIILGGLCREGKIEEALGMLEKLWYDG 409 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 409 (521)
...+..+...|.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..++++.+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45566666667777777777777777666543211 2344444444444444444444444444432
Q ss_pred CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 009977 410 IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDA 468 (521)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 468 (521)
+. +...|..+..+|...|++++|+..|+++++. .| +...+..+..++.+.|+.++|
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22 3344444444444444444444444444432 22 333444444444444444444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=4e-07 Score=70.41 Aligned_cols=120 Identities=8% Similarity=-0.022 Sum_probs=85.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHH
Q 009977 163 KPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYS 242 (521)
Q Consensus 163 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 242 (521)
+.+...+..+...+...|++++|...++++.+. .+.+..++..++..+...|++++|...+++..+..+ .+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~ 88 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIKGYT 88 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CchHHHH
Confidence 334455666777777777777777777777642 233567788888888888888888888888877665 4677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 243 TLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
.++.++...|++++|++.|++..... +.+...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 88888888888888888888887653 334455666666655444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.8e-07 Score=68.50 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009977 167 KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLID 246 (521)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (521)
..+..+...+...|++++|...++++.+. .+.+..++..++..+...|++++|...++++....+ .+..++..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~ 85 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHH
Confidence 44555566666666666666666666542 233566777777778888888888888887777655 46677777788
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 009977 247 GLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (521)
.+...|++++|...|+++.... +.+...+..+...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 8888888888888888877653 344555555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-07 Score=76.50 Aligned_cols=121 Identities=7% Similarity=0.046 Sum_probs=82.6
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCCh--
Q 009977 178 ESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDG-LCKNGRF-- 254 (521)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 254 (521)
..|++++|...++..++. .+.+...+..++..|...|++++|...|++.....+ .+...+..++.+ +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence 346666666666666542 234566777777777778888888888877776665 466677777777 6677777
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 255 REAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 255 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
++|+..|+++.... +.+...+..+...+...|++++|...++.+.+..
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888777653 4456677777777778888888888888777754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=5.3e-07 Score=69.41 Aligned_cols=117 Identities=13% Similarity=0.032 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009977 167 KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLID 246 (521)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (521)
..+..+...+...|++++|...++++... .+.+...+..++..+...|++++|...+++.....+ .+...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cCHHHHHHHHH
Confidence 34555555666666666666666666542 233566677777777777777777777777776654 45667777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Q 009977 247 GLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGK 289 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 289 (521)
.+...|++++|...|++..... +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhc
Confidence 7777777777777777776653 3455666666666665554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-07 Score=72.00 Aligned_cols=98 Identities=10% Similarity=0.005 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..+...+.+.|++++|...|++.....+ .+...|..+..++...|++++|+..|++....+ +.+...+..+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHH
Confidence 44566677777778888888888887777665 567777777777888888888888888777763 44556677777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.++...|++++|...|+..++.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777888888888888777765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=9.7e-07 Score=66.45 Aligned_cols=96 Identities=17% Similarity=0.092 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..++..+...|++++|...|++.....+ .+...+..++..+...|++++|...+++..... +.+...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 444455555555555555555555554443 344455555555555555555555555555432 2334445555555
Q ss_pred HHhCCCHHHHHHHHHHHHHc
Q 009977 284 FCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~ 303 (521)
+...|++++|.+.++...+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 55555555555555555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-07 Score=69.50 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCC----HHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQI-LPD----ALTYN 278 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 278 (521)
++..++..+.+.|++++|++.|++..+..| .+...|..++.+|...|++++|++.+++.++..+. .++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 444555566666666666666666555554 35555666666666666666666666555543110 111 12344
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 009977 279 VLIDGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~ 302 (521)
.+..++...|++++|++.|++.++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.9e-08 Score=81.92 Aligned_cols=87 Identities=14% Similarity=-0.070 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
.++..+..+|...|++++|+..+++.....+ .+...+..++.++...|++++|++.|++..... +.+...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 3455555555555566666555555555443 345555555555555555555555555555442 233444444444
Q ss_pred HHHhCCCHHHH
Q 009977 283 GFCRGGKVDRA 293 (521)
Q Consensus 283 ~~~~~~~~~~a 293 (521)
++...++..++
T Consensus 165 ~~~~~~~~~~~ 175 (198)
T 2fbn_A 165 CVNKLKEARKK 175 (198)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 44444443333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-07 Score=70.29 Aligned_cols=100 Identities=13% Similarity=-0.058 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 417 YRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELIC 495 (521)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (521)
+..+...+.+.|++++|+..++++++. .| +...+..+..++...|++++|+..++++++.. +.+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 445566677888888888888888853 45 67777788888888888888888888888763 334577778888888
Q ss_pred ccCcHHHHHHHHHHHHHcCccCcc
Q 009977 496 RGRKLLFAFELLDELVIKESGTIQ 519 (521)
Q Consensus 496 ~~g~~~~A~~~~~~m~~~~~~~~~ 519 (521)
..|++++|...++++++.+|....
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 888888888888888887776543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-06 Score=67.46 Aligned_cols=95 Identities=18% Similarity=0.083 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..+...+.+.|++++|+..|++..+..+ .+...|..++.++...|++++|+..|++.++.+ +.+...+..+..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 444445555555555555555555555443 344555555555555555555555555555442 3334455555555
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 009977 284 FCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~ 302 (521)
+...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.2e-07 Score=71.44 Aligned_cols=99 Identities=14% Similarity=-0.012 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
+...+..+...+.+.|++++|+..|++..+..+ .+...|..+..++...|++++|+..|++.+..+ +.+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP--ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 344566666666666666666666666666554 356666666666666666666666666666553 3445566666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
..+|...|++++|...|++.++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666666654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-07 Score=69.70 Aligned_cols=95 Identities=8% Similarity=-0.072 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCC----HHHHHHH
Q 009977 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG--FLPH----YATSNEL 455 (521)
Q Consensus 382 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~p~----~~~~~~l 455 (521)
+..++..+.+.|++++|+..|+++.+..+. +...|..+..+|...|++++|+..++++++.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 334444444444444444444444443222 33444444444444444444444444444210 0000 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009977 456 LVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 456 ~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
..++...|++++|+..|++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-07 Score=71.46 Aligned_cols=98 Identities=11% Similarity=-0.097 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009977 167 KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLID 246 (521)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (521)
..+..+...+...|++++|...|+.++.. .+.+...|..+..+|...|++++|+..|++.....+ .+...|..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHHHHHHHH
Confidence 44555566677777777777777777642 334667788888888888888888888888887776 46667777888
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q 009977 247 GLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
++...|++++|++.|++.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888877653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.4e-07 Score=72.01 Aligned_cols=106 Identities=12% Similarity=0.019 Sum_probs=82.6
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009977 164 PSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYST 243 (521)
Q Consensus 164 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 243 (521)
.+...+..+...+...|++++|...|+++++. .+.+...|..+..+|.+.|++++|+..|++..+..+ .+...|..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~ 84 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 34456666777777888888888888877653 234677888888889999999999999998888776 57888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 009977 244 LIDGLCKNGRFREAIELFEEMVSKDQILPD 273 (521)
Q Consensus 244 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 273 (521)
+..++...|++++|+..|++.+...+..++
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 889999999999999999988876543444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-06 Score=66.47 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMN 317 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (521)
...|..++..+...|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4556667777777888888888887777653 4566777777777777777777777777777764 445667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 009977 318 GFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 318 ~~~~~~~~~~A~~~~~~~~~ 337 (521)
++...|++++|...|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 77777777777777777665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-06 Score=83.94 Aligned_cols=204 Identities=7% Similarity=-0.042 Sum_probs=99.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCCH---------------HHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCH
Q 009977 66 ISLIKCEKEPQCALEIFNTVSEQKGFNHNN---------------ATYATILDKLARYKKFEAVDAVLRQMTYETCKFHE 130 (521)
Q Consensus 66 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (521)
...+.+.|++++|++.|..+++...-..+. .++..++..|...|++++|.+.+..+...-.....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345678899999999999887654222221 23555666677777777777766666543111111
Q ss_pred H-----HHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHH
Q 009977 131 G-----IFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIF 205 (521)
Q Consensus 131 ~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 205 (521)
. +...+...+...|++++|+++++....... .......-..++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK--------------------------------REKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH--------------------------------HSSCCSSHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--------------------------------HhCccHHHHHHH
Confidence 1 112222333344556666555554321100 000111123345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCC--HHH
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKSQM----SYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD---QILPD--ALT 276 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~ 276 (521)
..++..|...|++++|..+++++...-. ......++..++..|...|++++|..++++..... +.++. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 5555555555555555555555432110 00123445555555666666666665555543321 01111 223
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 277 YNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
+..+...+...+++++|...|.+..
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444455555566666655555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-06 Score=81.89 Aligned_cols=200 Identities=9% Similarity=0.057 Sum_probs=130.4
Q ss_pred HHHHHhcCCchHHHHHHHHhhhccCCcC----------------HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCC
Q 009977 102 LDKLARYKKFEAVDAVLRQMTYETCKFH----------------EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPS 165 (521)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 165 (521)
...+...|++++|.+.|..+.+...... ..++..++..|...|++++|.+.+.++.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~-------- 82 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST-------- 82 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH--------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------
Confidence 4456778888888888888876542111 1124445555555555555555555443
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCC
Q 009977 166 LKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN----TCIFNILIKHHCKRGTLESAFEVLKEMKK----SQMSYPN 237 (521)
Q Consensus 166 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 237 (521)
...+..++ ..+.+.+...+...|++++|..++++... .+....-
T Consensus 83 ----------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 83 ----------------------------EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp ----------------------------HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred ----------------------------HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 21111111 12344455555667788888887777543 2222233
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC---
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQ----ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN--GCNPN--- 308 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~--- 308 (521)
..++..++..+...|++++|..+++++..... .+.....+..++..|...|++++|..++++.... ....+
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 56788899999999999999999998865311 1223567899999999999999999999887652 11111
Q ss_pred -cchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 309 -VFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 309 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
...+..++..+...+++++|...|.+..+
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23566777888899999999988876643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-06 Score=68.59 Aligned_cols=99 Identities=8% Similarity=-0.142 Sum_probs=62.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 201 NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
+...+..+...+...|++++|...|++.....+ .+...|..++.++...|++++|+..+++..... +.+...+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 455666666666666666666666666666554 355666666666666666666666666666542 3445566666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
..++...|++++|...|+++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666666666666666666543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.58 E-value=8.8e-07 Score=65.98 Aligned_cols=104 Identities=13% Similarity=0.006 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKP--ESDSWALL 490 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 490 (521)
+...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34556667777888888888888888887542 2366777788888888899999999988888763 23 46788888
Q ss_pred HHHHHcc-CcHHHHHHHHHHHHHcCccCc
Q 009977 491 VELICRG-RKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 491 ~~~~~~~-g~~~~A~~~~~~m~~~~~~~~ 518 (521)
..++.+. |++++|.+.++++.+.+|++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888899 999999999999988877654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-06 Score=73.82 Aligned_cols=123 Identities=13% Similarity=-0.010 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN--------------LITYSTLIDGLCKNGRFREAIELFEEMVSKDQ 269 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 269 (521)
.+..+...+...|++++|...|++.....+..++ ...|..+..++...|++++|+..+++.+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 4555666666777777777777776664432111 2455666666666666666666666666542
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 009977 270 ILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAK 329 (521)
Q Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 329 (521)
+.+...+..+..++...|++++|...|++..+.. +.+..++..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666543 334445555555555544444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.9e-06 Score=62.99 Aligned_cols=109 Identities=17% Similarity=0.072 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009977 167 KAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLID 246 (521)
Q Consensus 167 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (521)
..+..+...+...|++++|...++.+... .+.+...+..++..+...|++++|...+++.....+ .+...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHHH
Confidence 34555566666677777777777766542 233566777777778888888888888888777665 46677777788
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 247 GLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
++...|++++|.+.+++..+.. +.+...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 113 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE--ANNPQLKEGLQ 113 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 8888888888888888877653 33444444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.2e-06 Score=66.62 Aligned_cols=98 Identities=11% Similarity=-0.024 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN---LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYN 278 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 278 (521)
...+..+...+...|++++|...|++..+..+ .+ ...|..+..++...|++++|+..+++..... +.+...+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDA--TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHH
Confidence 44455555555555555555555555554432 11 3444555555555555555555555554432 23344445
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 279 VLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555555555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-06 Score=65.57 Aligned_cols=96 Identities=10% Similarity=0.060 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP--DALTYNVLI 281 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~ 281 (521)
.+..++..+...|++++|...|++..+..+ .+...|..++..+...|++++|++.|++..+.. +. +...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHH
Confidence 344445555555555555555555554443 344455555555555555555555555555432 22 344555555
Q ss_pred HHHHhC-CCHHHHHHHHHHHHHc
Q 009977 282 DGFCRG-GKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~-~~~~~a~~~~~~~~~~ 303 (521)
.++... |++++|.+.++...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.50 E-value=9.8e-07 Score=67.88 Aligned_cols=98 Identities=14% Similarity=0.153 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CCC----HHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQI-LPD----ALTYN 278 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~ 278 (521)
.+..++..+...|++++|...|++.....+ .+...+..++..+...|++++|+..++++....+. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445555555556666666666665555443 34555555555555666666666665555443210 111 44455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 279 VLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.+..++...|++++|.+.|+.+.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555555555555555555555543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=4.1e-06 Score=65.07 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
.+...|..++..+...|++++|+..|++.+... +.+...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 455666666667777777777777777666653 3455666666666666777777777666666654 3445566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
..++...|++++|...|+++.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666666544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=65.68 Aligned_cols=91 Identities=12% Similarity=-0.065 Sum_probs=42.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
+...+.+.|++++|...|++..+..+ .+...|..+..++...|++++|+..|++.++.+ +.+...+..+..++...
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 33444444455555554444444443 244444444444444555555555554444432 22334444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 009977 288 GKVDRAKKIMEFMKN 302 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~ 302 (521)
|++++|+..++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.9e-06 Score=64.04 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=78.9
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHH
Q 009977 164 PSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN----TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLI 239 (521)
Q Consensus 164 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 239 (521)
.+...+..+...+...|++++|...++.+.+ ..|+ ...+..+...|...|++++|...+++.....+ .+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GDVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cCHH
Confidence 3445566666777777777777777777663 3344 56777788888888888888888888877665 4677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 240 TYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 240 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
.|..+..++...|++++|...|++..... +.+...+..+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHH
Confidence 78888888888888888888888887753 33444444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2e-06 Score=66.03 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-------cc
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPN-------VF 310 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~ 310 (521)
...|..++..+...|++++|+..|++..... +.+...+..+...+...|++++|...++.+.+.. +.+ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHH
Confidence 4456667777777778888888777777653 4456667777777777777777777777776543 111 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
++..++.++...|++++|.+.|+.+.+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556666666666667666666666665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-06 Score=69.03 Aligned_cols=133 Identities=13% Similarity=-0.066 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCc-cC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYDGIY-LN----KASYRIVLNFSCQKGELEKAIELLRLMLCR----GFLP-HYA 450 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~ 450 (521)
++..+...+...|++++|...+++....... .+ ..++..+...+...|++++|...++++.+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444455555555555555544432100 01 124445555556666666666666655532 0000 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 009977 451 TSNELLVRLCKAGMAEDAAIALFGLVEM----GFKPE-SDSWALLVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
++..+...+...|++++|...+++..+. +..+. ...+..+...+...|++++|.+.+++.++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666667777777777777666532 11111 245666777777888888888888877654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-05 Score=61.69 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=44.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHH
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNL---ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD---ALTYNVLI 281 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~ 281 (521)
++..+...|++++|...|+++.+..+. +. ..+..++.++...|++++|+..|+++.... +.+ ...+..+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN--GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 344444555555555555555444331 11 344445555555555555555555554432 112 33444455
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.++...|++++|...|+.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-06 Score=67.04 Aligned_cols=68 Identities=9% Similarity=-0.053 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCH-HHH----HHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 451 TSNELLVRLCKAGMAEDAAIALFGLVEM-----GFKPES-DSW----ALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
.|..+..++.+.|++++|+..+++.++. .+.|+. ..| .....++...|++++|+..|++.++..|++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 5666666666777777777777666653 113443 566 6777777788888888888888777666543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5.3e-06 Score=79.35 Aligned_cols=125 Identities=13% Similarity=-0.030 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN-------------LITYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
...+..+...+.+.|++++|...|++..+..+..++ ...|..+..+|.+.|++++|+..|++++...
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 335666667777777777777777776665442111 4556666666666666666666666666553
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 009977 269 QILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAK 329 (521)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 329 (521)
+.+...|..+..+|...|++++|+..|+++++.. +.+..++..+..++.+.++.+++.
T Consensus 348 --p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 --SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred --CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666553 334455556666666666555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.3e-06 Score=64.14 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-C---HHHHHH
Q 009977 382 FNIILGGLCREGKIEEALGMLEKLWYDGIYLNK---ASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-H---YATSNE 454 (521)
Q Consensus 382 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~---~~~~~~ 454 (521)
+..+...+...|++++|...|+.+....+. +. ..+..+..++...|++++|...|+++++. .| + ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHH
Confidence 445666777888888888888888775432 22 46667777888888888888888888754 34 2 566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
+..++...|++++|...|+++.+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888888888888888888765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.6e-06 Score=79.78 Aligned_cols=150 Identities=12% Similarity=-0.014 Sum_probs=99.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--------------HhHHHHHH
Q 009977 322 EGKLQEAKEVFDEMKNFLLKP-DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKAD--------------IVTFNIIL 386 (521)
Q Consensus 322 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~ 386 (521)
.+++++|...|+..... .| ....|..+...|.+.|++++|+..|++.++...... ...|..+.
T Consensus 247 l~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34455555555433321 12 356778888889999999999999999887643311 46677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 009977 387 GGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMA 465 (521)
Q Consensus 387 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 465 (521)
.+|.+.|++++|+..+++++..... +...|..+..+|...|++++|+..|+++++ +.| +...+..+..++.+.++.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHH
Confidence 7777888888888888877776443 566777777777778888888888877774 445 555666677777777777
Q ss_pred HHHHH-HHHHHH
Q 009977 466 EDAAI-ALFGLV 476 (521)
Q Consensus 466 ~~a~~-~~~~~~ 476 (521)
+++.+ .+.+|.
T Consensus 402 ~~a~~~~~~~~f 413 (457)
T 1kt0_A 402 NERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 66553 344444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-06 Score=83.10 Aligned_cols=121 Identities=12% Similarity=-0.010 Sum_probs=79.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
+...+.+.|++++|.+.|++..+..+ .+..+|..++.++.+.|++++|++.++++.+.. +.+...+..+..+|...
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 34455667777777777777776655 456777777777777777777777777777653 44566777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHH--HHhcCCHHHHHHHHH
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNG--FCKEGKLQEAKEVFD 333 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 333 (521)
|++++|++.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777777654 3344455555555 666777777777776
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.5e-06 Score=66.89 Aligned_cols=138 Identities=11% Similarity=-0.007 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhhhccCC-cC----HHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHH
Q 009977 97 TYATILDKLARYKKFEAVDAVLRQMTYETCK-FH----EGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAIST 171 (521)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (521)
++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|++.+++.........+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----- 85 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----- 85 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc-----
Confidence 4455555556666666666666555433110 00 1244455555555666666666555543211100000
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCCHHHHHHHHHH
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQM----SYPNLITYSTLIDG 247 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~ 247 (521)
.....++..+...+...|++++|.+.+++...... ......++..+...
T Consensus 86 ---------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 86 ---------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 00123445555555566666666655555433211 00113345556666
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 009977 248 LCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 248 ~~~~g~~~~A~~~~~~~~~ 266 (521)
+...|++++|.+.+++..+
T Consensus 139 ~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666777777666666554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.34 E-value=5.6e-06 Score=76.55 Aligned_cols=120 Identities=12% Similarity=-0.004 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----------------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKK----------------SQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
.+..+...+.+.|++++|++.|++..+ ..+ .+..+|..+..++.+.|++++|++.++++++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP--VALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH--HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 355556666666666666666666554 111 23445555555566666666666666665544
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 009977 268 DQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEA 328 (521)
Q Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 328 (521)
. +.+...+..+..+|...|++++|+..|+++.+.. +.+...+..+..++...++.+++
T Consensus 303 ~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 D--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 3345555555555556666666666665555543 23344444444444444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=66.02 Aligned_cols=88 Identities=15% Similarity=0.013 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 179 SNQVDLAQNFLKYSNQHLR-LKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
.|++++|+..|+++++... .+.+..++..+..+|...|++++|+..|++..+..+ .+...+..++.++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHHH
Confidence 3556666666666653200 122345677777777777777777777777777665 4566777777777777777777
Q ss_pred HHHHHHHHhcC
Q 009977 258 IELFEEMVSKD 268 (521)
Q Consensus 258 ~~~~~~~~~~~ 268 (521)
+..|++.+...
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 77777776653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.6e-06 Score=67.08 Aligned_cols=64 Identities=16% Similarity=0.176 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 238 LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
...|..+..+|.+.|++++|+..+++++..+ +.+...|..+..+|...|++++|...|+..++.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3455556666666666666666666665542 344555666666666666666666666666554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.8e-07 Score=67.86 Aligned_cols=86 Identities=21% Similarity=0.086 Sum_probs=61.4
Q ss_pred hcCCHHHHHHHHHHHHHCC--CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 009977 391 REGKIEEALGMLEKLWYDG--IYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAED 467 (521)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 467 (521)
..|++++|+..|+++.+.+ -+-+...+..+..+|...|++++|+..|+++++. .| +...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 3577888888888887763 1224566777788888888888888888888854 34 57777778888888888888
Q ss_pred HHHHHHHHHHC
Q 009977 468 AAIALFGLVEM 478 (521)
Q Consensus 468 a~~~~~~~~~~ 478 (521)
|...+++.++.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888887764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.4e-06 Score=67.20 Aligned_cols=103 Identities=16% Similarity=0.017 Sum_probs=81.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------cc-CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 009977 378 DIVTFNIILGGLCREGKIEEALGMLEKLWYD--------GI--------YL-NKASYRIVLNFSCQKGELEKAIELLRLM 440 (521)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~--------~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (521)
....+......+.+.|++++|+..|.+.... .. .| +...|..+..+|.+.|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567788888999999999999999998875 10 11 2356778888888999999999999998
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 441 LCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 441 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
++. .| +...|..+..++...|++++|...|++.++. .|+.
T Consensus 90 l~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 90 LKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred Hhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 864 45 6778888888999999999999999988876 3554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-05 Score=74.20 Aligned_cols=139 Identities=8% Similarity=-0.093 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNF 423 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (521)
...+..+...+.+.|++++|+..|++.++.- +... ..... +...... ..+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHHHHH-HHHHHHHHHHHHH
Confidence 4556666777777777777777777766530 0000 00011 1111110 1134567777778
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLF 502 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (521)
|.+.|++++|+..++++++ +.| +...+..+..+|...|++++|...|+++++.. +.+...+..+..++...++.++
T Consensus 283 ~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888885 345 67777778888888888888888888887763 2345667777777777777777
Q ss_pred HHH
Q 009977 503 AFE 505 (521)
Q Consensus 503 A~~ 505 (521)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.2e-05 Score=73.63 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=121.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK----------IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK 427 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (521)
...++|++.++.+.+..+. +..+|+.-..++...|+ ++++++.++.+.+..++ +..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3446778888888887654 56677777667766666 88899999988887665 778888888888888
Q ss_pred C--CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc------
Q 009977 428 G--ELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAG-MAEDAAIALFGLVEMGFKPESDSWALLVELICRG------ 497 (521)
Q Consensus 428 g--~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 497 (521)
| +++++++.++++++. +| +..+|+.-..++.+.| .++++.+.++++++.. +-+...|.....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 8 679999999999864 45 7888888888888888 8888999888888764 44667787777666553
Q ss_pred --------CcHHHHHHHHHHHHHcCccCc
Q 009977 498 --------RKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 498 --------g~~~~A~~~~~~m~~~~~~~~ 518 (521)
+.+++|.+.+++++..+|.+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence 678999999999999888753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.2e-06 Score=80.36 Aligned_cols=118 Identities=13% Similarity=0.042 Sum_probs=79.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009977 175 LLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRF 254 (521)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 254 (521)
.+.+.|++++|...++++++. .+.+..++..+..+|.+.|++++|++.+++..+..+ .+..+|..++.+|...|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCH
Confidence 344566777777777766642 233467788888888888888888888888887765 5677788888888888888
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 009977 255 REAIELFEEMVSKDQILPDALTYNVLIDG--FCRGGKVDRAKKIME 298 (521)
Q Consensus 255 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 298 (521)
++|++.|+++.+..+..++ .+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888776433333 34444444 777788888888777
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00011 Score=72.01 Aligned_cols=171 Identities=10% Similarity=-0.025 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR----------FREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
++|++.++++...++ .+..+|+.-..++...|+ ++++++.++++...+ +-+..+|+.-..++.+.+
T Consensus 46 eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 46 ESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcc
Confidence 566777777777766 466667666666666665 777777777777653 556667777777777777
Q ss_pred --CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------
Q 009977 289 --KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEG-KLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRA-------- 357 (521)
Q Consensus 289 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 357 (521)
+++++++.++++.+.. +-+..+|+.-..++.+.| .++++++.+.++.+..+. +..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 5677777777777765 456666766666666777 677777777777664332 566776666665542
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 009977 358 ------GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIE 396 (521)
Q Consensus 358 ------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 396 (521)
+.++++++.++++....+. |..+|..+...+.+.++.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4578888888888877654 6777877777777666633
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.7e-06 Score=77.77 Aligned_cols=152 Identities=10% Similarity=-0.028 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 009977 344 TIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNF 423 (521)
Q Consensus 344 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (521)
...+..+...+.+.|++++|+..|++..... |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5667777888888999999999999988763 33321 223334444433221 1367788888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH-HccCcH
Q 009977 424 SCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPE-SDSWALLVELI-CRGRKL 500 (521)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~~g~~ 500 (521)
|.+.|++++|+..++++++. .| +...+..+..+|...|++++|...|+++++. .|+ ...+..+.... ...+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 45 7788888999999999999999999988765 344 34555555552 346777
Q ss_pred HHHHHHHHHHHHcCccCc
Q 009977 501 LFAFELLDELVIKESGTI 518 (521)
Q Consensus 501 ~~A~~~~~~m~~~~~~~~ 518 (521)
+++...|.+|....|.+.
T Consensus 316 ~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhhCCCCCCC
Confidence 888999999998877653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.8e-05 Score=60.77 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhc------
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP-----NL-----ITYSTLIDGLCKNGRFREAIELFEEMVSK------ 267 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 267 (521)
.+......+.+.|++++|+..|++..+..+..| +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 445556666677777777777777666554311 22 26666777777777777777777666654
Q ss_pred -CCCCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHH
Q 009977 268 -DQILPDALTY----NVLIDGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 268 -~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (521)
+ +.+...| .....++...|++++|+..|++.++
T Consensus 93 ~~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LN--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TT--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2 2234455 6666666666666666666666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.2e-06 Score=74.92 Aligned_cols=146 Identities=11% Similarity=0.037 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
.+..+...+.+.|++++|...|++.....+ +... +...|+.+++...+. ...|..+..+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p---~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMG---DDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSC---HHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhc---cchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 455566666777777777777777665432 2110 111122222221110 0134445555
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHhcCCHH
Q 009977 284 FCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPD-TIGYTTLINC-FCRAGRVD 361 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~~~~~ 361 (521)
|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|+++.+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443 334445555555555555555555555554432 222 2223333222 12234444
Q ss_pred HHHHHHHHHHHc
Q 009977 362 EALELLKEMKER 373 (521)
Q Consensus 362 ~A~~~~~~~~~~ 373 (521)
++..+|..+...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 555555555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.1e-05 Score=73.86 Aligned_cols=125 Identities=14% Similarity=-0.052 Sum_probs=65.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----CCc-c-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHH
Q 009977 389 LCREGKIEEALGMLEKLWYD-----GIY-L-NKASYRIVLNFSCQKGELEKAIELLRLMLCR-----G-FLP-HYATSNE 454 (521)
Q Consensus 389 ~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p-~~~~~~~ 454 (521)
+...|++++|..++++.++. |.. | ...+++.|..+|...|++++|..+++++++- | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33455566665555554432 110 1 1234555566666666666666666555421 1 111 2334556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 009977 455 LLVRLCKAGMAEDAAIALFGLVE-----MGFK-PES-DSWALLVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 455 l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
|...|...|++++|..+++++++ .|.. |+. .+...+..++...|.+++|..+|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666553 2311 111 33445555666666777777777666653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-05 Score=59.13 Aligned_cols=79 Identities=14% Similarity=-0.011 Sum_probs=64.2
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhh
Q 009977 77 CALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKI 156 (521)
Q Consensus 77 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 156 (521)
+|++.|++++... +.+...+..+..++...|++++|...+++..+.+ +.+...+..+..+|...|++++|+..|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5777888876543 4567888888889999999999999999988775 556778888888899999999999988887
Q ss_pred cc
Q 009977 157 HP 158 (521)
Q Consensus 157 ~~ 158 (521)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.9e-05 Score=71.95 Aligned_cols=99 Identities=7% Similarity=-0.070 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCC
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKK-----SQMSYPN-LITYSTLIDGLCKNGRFREAIELFEEMVSK-----DQILP 272 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 272 (521)
+++.|+.+|...|++++|..++++..+ .|+..|+ ..+++.|+..|...|++++|+.++++.++. +...|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 555566666666666666655555432 2333333 234555666666666666666666555431 11122
Q ss_pred C-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009977 273 D-ALTYNVLIDGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 273 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (521)
+ ..+.+.+..++...+.+++|+.+|..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22344455555566666666666666654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00016 Score=56.06 Aligned_cols=7 Identities=0% Similarity=0.235 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 009977 257 AIELFEE 263 (521)
Q Consensus 257 A~~~~~~ 263 (521)
|+++|++
T Consensus 44 A~~~~~~ 50 (138)
T 1klx_A 44 LFQYLSK 50 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.3e-05 Score=57.10 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=53.4
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 185 AQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEM 264 (521)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 264 (521)
|...++.+++ ..+.+...+..+...|...|++++|...|++..+..+ .+...|..++.++...|++++|...|++.
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555543 1233566777777777777777777777777777665 45667777777777777777777777777
Q ss_pred Hhc
Q 009977 265 VSK 267 (521)
Q Consensus 265 ~~~ 267 (521)
...
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2.6e-05 Score=56.65 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 200 PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 200 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
.+...+..+...|...|++++|+..|++..+..+ .+...|..+..+|...|++++|++.|++.++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3566777777777777777777777777777665 35567777777777777777777777776654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00038 Score=53.85 Aligned_cols=88 Identities=11% Similarity=-0.060 Sum_probs=36.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR----AGRVDEALELLKEMKERGCKADIVTFNIILGGLC 390 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (521)
|...|...+.+++|.+.|++..+. -+...+..+...|.. .+++++|+..|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 333333334444444444444432 133344444444443 344444444444444432 2333344444444
Q ss_pred h----cCCHHHHHHHHHHHHHC
Q 009977 391 R----EGKIEEALGMLEKLWYD 408 (521)
Q Consensus 391 ~----~g~~~~a~~~~~~~~~~ 408 (521)
. .++.++|..+|++..+.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 3 34444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00012 Score=51.76 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLI 281 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 281 (521)
...+..+...+...|++++|...|++..+..+ .+...+..+..++...|++++|+..|++..... +.+...+..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 34555556666666666666666666655544 345556666666666666666666666665542 33444444444
Q ss_pred HHHH
Q 009977 282 DGFC 285 (521)
Q Consensus 282 ~~~~ 285 (521)
.++.
T Consensus 85 ~~~~ 88 (91)
T 1na3_A 85 NAKQ 88 (91)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=4.6e-05 Score=56.36 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
...+..+...+...|++++|.+.|++..+..+ .+...|..++.++...|++++|++.+++.+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34555566666666666666666666665554 35556666666666666666666666666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=5.1e-05 Score=59.16 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=47.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRF----------REAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
.+.+++|.+.+++..+..+ .+...|..+..++...+++ ++|+..|++.++.+ +.+..+|..+..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence 3445555556665555554 3555555555555555443 36666666666553 33455566666666
Q ss_pred HhCC-----------CHHHHHHHHHHHHHc
Q 009977 285 CRGG-----------KVDRAKKIMEFMKNN 303 (521)
Q Consensus 285 ~~~~-----------~~~~a~~~~~~~~~~ 303 (521)
...| ++++|++.|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5543 566666666666654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0002 Score=50.49 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHH
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLM 316 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 316 (521)
+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 34566667777777777777777777776653 4456666777777777777777777777776654 33445555555
Q ss_pred HHHHh
Q 009977 317 NGFCK 321 (521)
Q Consensus 317 ~~~~~ 321 (521)
.++..
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.84 E-value=5.2e-05 Score=54.97 Aligned_cols=66 Identities=8% Similarity=0.076 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhcc
Q 009977 92 NHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHP 158 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 158 (521)
+.+...+..+..++...|++++|...|++..+.+ +.+..++..+..+|...|++++|++.|++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456677777888888888888888888887765 44566777788888888888888888777653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.1e-05 Score=55.68 Aligned_cols=66 Identities=14% Similarity=0.232 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
+...|..++..+...|++++|++.|++.+... +.+...+..+..++...|++++|++.+++.++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45566777777777777777777777777653 4456677777777777777777777777777653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=4.8e-05 Score=59.30 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcC
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLCREGK----------IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQK 427 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (521)
+.+++|+..++...+..+. +...|..+..++...++ +++|+..|++.++.++. +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 3444555555555444332 44444444444444433 23455555554444322 334444444444433
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHH
Q 009977 428 -----------GELEKAIELLRLMLCRGFLPHYATS 452 (521)
Q Consensus 428 -----------g~~~~a~~~~~~~~~~~~~p~~~~~ 452 (521)
|++++|++.|+++++ +.|+...|
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y 127 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHY 127 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHH
Confidence 355555555555553 34544333
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0019 Score=58.02 Aligned_cols=143 Identities=13% Similarity=0.009 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHH--HhcC---CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh---cC--CHHHH---HHHHHHHHH
Q 009977 341 KPDTIGYTTLINCF--CRAG---RVDEALELLKEMKERGCKADIVTFNIILGGLCR---EG--KIEEA---LGMLEKLWY 407 (521)
Q Consensus 341 ~~~~~~~~~l~~~~--~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g--~~~~a---~~~~~~~~~ 407 (521)
..+...|...+.+. ...+ +..+|..+|++..+..+. ....|..+..+|.. .+ ..... ...++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 34566677666653 3333 346788888888877543 34455544444431 01 11111 111111111
Q ss_pred C-CCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009977 408 D-GIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDS 486 (521)
Q Consensus 408 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 486 (521)
. ....++.+|..+...+...|++++|...+++++.. .|+...|..+...+.-.|++++|...++++... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1 11335556666655555567777777777777754 366666666666777777777777777777665 466655
Q ss_pred HH
Q 009977 487 WA 488 (521)
Q Consensus 487 ~~ 488 (521)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00046 Score=49.59 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=55.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcc
Q 009977 421 LNFSCQKGELEKAIELLRLMLCRGFLP-HYA-TSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICRG 497 (521)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 497 (521)
...+...|++++|+..++++++. .| +.. .+..+..++...|++++|...|+++++.. |+. ..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~-------- 74 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH--------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHH--------
Confidence 44556677777777777777753 34 455 66777777777788888888877777653 332 22211
Q ss_pred CcHHHHHHHHHHHHHcCccCc
Q 009977 498 RKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 498 g~~~~A~~~~~~m~~~~~~~~ 518 (521)
+.+.++...+++....+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 566677777777666655544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0046 Score=43.61 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 200 PNTCIFNILIKHHCKRGT---LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 200 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
.++..+..+..++...++ .++|..++++..+..+ .++.....++..+.+.|++++|+..|+++++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 445555555555543333 4666666666666665 466666666666666777777777777666553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.015 Score=52.32 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=30.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009977 308 NVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKER 373 (521)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 373 (521)
+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34444444444444455555555555554432 44444444444445555555555555555444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00085 Score=51.67 Aligned_cols=82 Identities=17% Similarity=0.063 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 009977 395 IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKG---ELEKAIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAA 469 (521)
Q Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 469 (521)
...+.+-|.+....+. ++..+...+..++++.+ +.++++.++++..+.. .| +...+..+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555443 46666666666666666 4556777776666542 23 3445555666666777777777
Q ss_pred HHHHHHHHC
Q 009977 470 IALFGLVEM 478 (521)
Q Consensus 470 ~~~~~~~~~ 478 (521)
++++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777766665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0013 Score=61.53 Aligned_cols=61 Identities=10% Similarity=-0.081 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHHccCcHHHHHHHHHHHH
Q 009977 451 TSNELLVRLCKAGMAEDAAIALFGLVE-----MGF-KPES-DSWALLVELICRGRKLLFAFELLDELV 511 (521)
Q Consensus 451 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 511 (521)
+++.|..+|...|++++|..+++++++ .|. .|+. .+++.|+..|..+|++++|..++++++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344444444444444444444444432 110 1111 334444444555555555555544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0016 Score=61.04 Aligned_cols=88 Identities=7% Similarity=-0.061 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHhhhc--CCCC---Cc-HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCCH-HHHHHHHH
Q 009977 179 SNQVDLAQNFLKYSNQH--LRLK---PN-TCIFNILIKHHCKRGTLESAFEVLKEMKK-----SQMSYPNL-ITYSTLID 246 (521)
Q Consensus 179 ~~~~~~a~~~~~~~~~~--~~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~~~l~~ 246 (521)
.|++++|+.++++.++. .-+. |+ ..+++.|+.+|...|++++|..++++... .|+..|++ .+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777766531 1111 22 34677777777777777777777776543 23333332 44666677
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 009977 247 GLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 247 ~~~~~g~~~~A~~~~~~~~~ 266 (521)
.|...|++++|+.+|+++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777776666644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0035 Score=58.81 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=52.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---Ccc----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C-CCC-CHHH
Q 009977 386 LGGLCREGKIEEALGMLEKLWYDG---IYL----NKASYRIVLNFSCQKGELEKAIELLRLMLCR-----G-FLP-HYAT 451 (521)
Q Consensus 386 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p-~~~~ 451 (521)
+..+...|++++|..++++.++.. ..| ...+++.++.+|...|++++|+.+++++++- | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556667777777776666431 111 1234566666666667777777766666531 1 112 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 452 SNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 452 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55666666666677666666666665
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0068 Score=42.72 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---chHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccc
Q 009977 92 NHNNATYATILDKLARYKK---FEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPI 159 (521)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (521)
+.|...+..+..++...++ .++|..++++.++.+ |.+..++..+...+.+.|++++|++.|+++...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567777777777765544 688888888888876 567778888888888888888888888888643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.02 Score=59.14 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=88.9
Q ss_pred HHHHccCcHHHHHH-HHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcC
Q 009977 138 KHFSNCSLHERVLE-MFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRG 216 (521)
Q Consensus 138 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 216 (521)
......+++++|.+ ++..+. +...+..++..+.+.|..++|.++.+.- . .-.......|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~-----~~f~~~l~~~ 666 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQ--------D-----QKFELALKVG 666 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------H-----HHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCc--------c-----hheehhhhcC
Confidence 33445677777766 442221 1223366666777777777777654211 1 1123455678
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009977 217 TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKI 296 (521)
Q Consensus 217 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (521)
+++.|.++.+.+ .+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++
T Consensus 667 ~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 667 QLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp CHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHH
Confidence 888887775432 4667788888888888888888888887632 33444455556666665555
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 297 MEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDE 334 (521)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 334 (521)
.+.....| -++....+|.+.|++++|++++.+
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554443 223333344455555555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0036 Score=44.77 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=37.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLI-TYSTLIDGLCKNGRFREAIELFEEMVSKD 268 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 268 (521)
+..+.+.|++++|...|++..+..+ .+.. .|..++.++...|++++|++.|++.++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4455666667777777766666554 3555 66666666667777777777777666653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0049 Score=57.81 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=69.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcC--CCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCC-HHH
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHL--RLKPN----TCIFNILIKHHCKRGTLESAFEVLKEMKK-----SQMSYPN-LIT 240 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~-~~~ 240 (521)
+..+...|++++|+.+++++++.. -+.|+ ..+++.++.+|...|++++|+.+++++.. .|+..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888876421 12222 45788899999999999999998887653 3444444 355
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
++.|+..|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78899999999999999998888765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.11 Score=41.11 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=67.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH
Q 009977 211 HHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKV 290 (521)
Q Consensus 211 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (521)
...+.|+++.|.++.+++ .+...|..|.......|+++-|++.|.+... +..+.-.|.-.|+.
T Consensus 14 LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 445677888887776654 3566788888888888888888888776532 24444455666777
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 291 DRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEM 335 (521)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 335 (521)
++..++-+.....| -++.....+...|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 76666666555554 3444455566677777777777553
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.019 Score=59.30 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=56.3
Q ss_pred hcCCchHHHH-HHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHH
Q 009977 107 RYKKFEAVDA-VLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLA 185 (521)
Q Consensus 107 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 185 (521)
..+++++|.+ ++..+. +...+..++..+.+.|.+++|++..+.- ..-.......|++++|
T Consensus 611 ~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------------~~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQ-------------DQKFELALKVGQLTLA 671 (814)
T ss_dssp HTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------------HHHHHHHHHHTCHHHH
T ss_pred HhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCc-------------chheehhhhcCCHHHH
Confidence 4566666655 332211 0122355666666777777776654211 0112334556777777
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009977 186 QNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMK 229 (521)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 229 (521)
.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 672 ~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 672 RDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 7765432 355677777777778888877777777653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.13 Score=44.25 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=29.5
Q ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 009977 346 GYTTLINCFCR-----AGRVDEALELLKEMKERGCKADIVTFNIILGGLCRE-GKIEEALGMLEKLWYDGI 410 (521)
Q Consensus 346 ~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~ 410 (521)
.|..+...|.+ -|+.++|.+.|++.++.++.-+..++......++.. |+.+++.+.+++.+...+
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 44444444444 245555555555554443221233444444444442 445555555555544433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.72 E-value=4.5e-07 Score=82.61 Aligned_cols=165 Identities=11% Similarity=0.080 Sum_probs=103.8
Q ss_pred CCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHH
Q 009977 59 FISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMK 138 (521)
Q Consensus 59 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (521)
...|..+..+....+...+|++-|-++ .|+..|..++.+..+.|.+++-...+....+..- ++..=..|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 457888888888888888888776443 2555677888888889999988888877665432 2233347888
Q ss_pred HHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCCh
Q 009977 139 HFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTL 218 (521)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 218 (521)
+|++.++..+..+. -..|+..-...+.+-|...|.++.|.-+|..+. -|..|...+.+.|++
T Consensus 125 ayAk~~rL~elEef--------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~is----------N~akLAstLV~L~~y 186 (624)
T 3lvg_A 125 ALAKTNRLAELEEF--------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHHTSCSSSTTTST--------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC----------CCTTTSSSSSSCSGG
T ss_pred HHHhhCcHHHHHHH--------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCc----------cHHHHHHHHHHHHHH
Confidence 88888875443322 125666667778888888888888877775442 123344445555555
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009977 219 ESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREA 257 (521)
Q Consensus 219 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 257 (521)
..|.+.-++ ..++.||..+-.+|...+++.-|
T Consensus 187 q~AVdaArK-------Ans~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 187 QAAVDGARK-------ANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp GSSTTTTTT-------CCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHh-------cCChhHHHHHHHHHhCchHHHHH
Confidence 555432211 13444555555555555554443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.11 Score=44.71 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc-CCHHH
Q 009977 254 FREAIELFEEMVSKDQILPDALTYNVLIDGFCR-----GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKE-GKLQE 327 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 327 (521)
...|...+++.++.++...+...|..+...|.+ .|+.++|.+.|++.++.+...+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 456777777777664222235567777777777 378888888888888765222366777777777774 77888
Q ss_pred HHHHHHHHHhCCCC
Q 009977 328 AKEVFDEMKNFLLK 341 (521)
Q Consensus 328 A~~~~~~~~~~~~~ 341 (521)
|.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 88888887775544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0051 Score=45.50 Aligned_cols=81 Identities=16% Similarity=0.005 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 009977 396 EEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEK---AIELLRLMLCRGFLP--HYATSNELLVRLCKAGMAEDAAI 470 (521)
Q Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 470 (521)
..+.+-+......|. ++..+-..+..++.+..+... ++.+++.+.+.+ .| .......|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333444443333322 344444445555555544333 555555554432 12 23333444445555555555555
Q ss_pred HHHHHHHC
Q 009977 471 ALFGLVEM 478 (521)
Q Consensus 471 ~~~~~~~~ 478 (521)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.031 Score=43.03 Aligned_cols=85 Identities=20% Similarity=0.108 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHcCCCHHHHHH
Q 009977 360 VDEALELLKEMKERGCKADIVTFNIILGGLCREG---KIEEALGMLEKLWYDG-IYLNKASYRIVLNFSCQKGELEKAIE 435 (521)
Q Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (521)
...+.+-|.+....+. ++..+...+..++++.+ +.++++.+|+.+.+.+ +.-+...+-.+.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444455555544443 35555555666666655 4456666666666543 11123334444455566666666666
Q ss_pred HHHHHHHCCCCC
Q 009977 436 LLRLMLCRGFLP 447 (521)
Q Consensus 436 ~~~~~~~~~~~p 447 (521)
.++.+++ +.|
T Consensus 93 y~~~lL~--ieP 102 (152)
T 1pc2_A 93 YVRGLLQ--TEP 102 (152)
T ss_dssp HHHHHHH--HCT
T ss_pred HHHHHHh--cCC
Confidence 6666663 355
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0093 Score=43.14 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=56.7
Q ss_pred cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009977 412 LNKASYRIVLNFSCQKGELEKAIELLRLMLCRG------FLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES 484 (521)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 484 (521)
.+..-+..+...+...|+++.|...|+.+++.- -.+...++..+..++.+.|+++.|...++++.+. .|+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 355667788888999999999999999888531 1235678888999999999999999999999876 4554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.034 Score=40.10 Aligned_cols=66 Identities=9% Similarity=0.004 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQ-----MSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
...+..++..+.+.|+++.|...|+...+.. ........+..+..++.+.|++++|+.+++++...
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444555555666666666666655544321 00134455555666666666666666666666544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.51 E-value=0.65 Score=47.42 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=52.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHH
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTY--NVLIDGFC 285 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~ 285 (521)
|...+.-.|+-+....++..+.+... .+..-...+.-++...|+.+.+..+.+.+.... .|....- .++.-+|+
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~--e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAya 571 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQH--GNITRGLAVGLALINYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCc--HHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhc
Confidence 33344455555555555555443211 122222333334445566666665555554321 1111111 12233445
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 286 RGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
..|+.....+++..+.... ..++.....+.-++...|+.+.+..++..+.+
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 5556555555665555431 11222222222333334444444555544433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.16 Score=40.21 Aligned_cols=100 Identities=11% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChH
Q 009977 140 FSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLE 219 (521)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 219 (521)
..+.|+++.|.++.+.+. +...|..+.......|+++-|...|.... -+..+.-.|.-.|+.+
T Consensus 15 AL~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----------D~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQH----------SFDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT----------CHHHHHHHHHHHTCHH
T ss_pred HHhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhC----------CHHHHHHHHHHhCCHH
Confidence 344555555555544431 23445555555555555555555555442 1233333444455555
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009977 220 SAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEE 263 (521)
Q Consensus 220 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 263 (521)
.-.++-+.....|- ++.....+...|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~-------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED-------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc-------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444443333321 33333444455666666655544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.08 E-value=1.5 Score=44.81 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=21.6
Q ss_pred CChHHHHHHHHhcCChHHHHHHHHHhh
Q 009977 60 ISHGAAISLIKCEKEPQCALEIFNTVS 86 (521)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 86 (521)
..|..++....+.++.+.+.++|+.+.
T Consensus 231 ~dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 231 CDYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356777788888888888999998874
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=1.1 Score=42.08 Aligned_cols=193 Identities=13% Similarity=0.169 Sum_probs=111.5
Q ss_pred CChHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH----HccC
Q 009977 73 KEPQCALEIFNTVSE----QKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF----SNCS 144 (521)
Q Consensus 73 ~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g 144 (521)
++++.|++-+-.+.+ ..+..........++..|...|+++...+.+..+...... .......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 678888777654432 2234445677888999999999999887777666544222 222333333322 2222
Q ss_pred --cHHHHHHHHHhhccccCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCc---HHHHHHHHHHHH
Q 009977 145 --LHERVLEMFHKIHPITREKP-----SLKAISTCLNLLIESNQVDLAQNFLKYSNQH-LRLKPN---TCIFNILIKHHC 213 (521)
Q Consensus 145 --~~~~a~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~~l~~~~~ 213 (521)
+.+.-+.+.+.+........ .......+...+...|++.+|..++..+... .+.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22233334443322111111 1122345677788888888888888877532 122121 346777778888
Q ss_pred hcCChHHHHHHHHHHHh---CCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 214 KRGTLESAFEVLKEMKK---SQMSYPN--LITYSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~---~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
..+++.+|..++.++.. .....|+ ...+...+..+...++|.+|.+.|.++..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88888888888877632 1111122 23455666677777888888777776654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.15 Score=38.35 Aligned_cols=67 Identities=12% Similarity=-0.129 Sum_probs=28.8
Q ss_pred cCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 412 LNKASYRIVLNFSCQKGE---LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
|+..+--.+..++.+..+ ..+++.+++.+.+.+..-.......|.-++.+.|++++|.++.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444444444444432 2344445554443221112333333444455555555555555555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.19 Score=38.19 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009977 288 GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK 341 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 341 (521)
++.++|.++|+.+++.+ +.-...|....+.-.+.|++..|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55666666666665432 111444444455555566666666666665554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.082 Score=39.22 Aligned_cols=69 Identities=12% Similarity=-0.147 Sum_probs=35.8
Q ss_pred CccCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 410 IYLNKASYRIVLNFSCQKGE---LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
..|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+..+.-++.+.|++++|.++.+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34455554445555555443 3355566666554331113444445555666666666666666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.018 Score=53.21 Aligned_cols=378 Identities=13% Similarity=0.110 Sum_probs=213.7
Q ss_pred CCCCChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHH
Q 009977 57 SRFISHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNL 136 (521)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (521)
.+...|..+|....+.|.+++-+.++.-+ +.. ..++..=+.|+-+|++.++..+.++.+. .|+..-...+
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~Ma-Rk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~V 150 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMA-RKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 150 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTT-STT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHH-HHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHH
Confidence 56778999999999999999999998765 433 3455556689999999999876444332 2333344566
Q ss_pred HHHHHccCcHHHHHHHHHhhccc-------------------cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 009977 137 MKHFSNCSLHERVLEMFHKIHPI-------------------TREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLR 197 (521)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 197 (521)
..-|...|.++.|.-+|..+... .....+..+|..+-.+|...+.+..|...--.++-.
T Consensus 151 GDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-- 228 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-- 228 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC--
T ss_pred HHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc--
Confidence 77777777777776666654311 111445678999999999999888776554444322
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-----
Q 009977 198 LKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP----- 272 (521)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----- 272 (521)
+| -...++..|-..|.+++-+.+++... |........|+.|+-.|++- ++++..+.++..-.+-+++-
T Consensus 229 --ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 229 --AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp --SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred --HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 11 22345677888999999999998776 34346778888888777765 45666665554433322221
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHH-------------HHHHHcCCCCCcchHHHHHHHHHh---------------cC
Q 009977 273 -DALTYNVLIDGFCRGGKVDRAKKIM-------------EFMKNNGCNPNVFNYTTLMNGFCK---------------EG 323 (521)
Q Consensus 273 -~~~~~~~l~~~~~~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~---------------~~ 323 (521)
....|.-++-.|.+-.++|.|.... .+++.+ ..|...|...+..|.+ .=
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prl 379 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRL 379 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTC
T ss_pred HHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccC
Confidence 1234666777777777777654321 111111 2344445444444443 33
Q ss_pred CHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHHHHH------------HHHHHHHcCCCCcHhH
Q 009977 324 KLQEAKEVFDEMKNF----------LLKPDTIGYTTLINCFCRAGRVDEALE------------LLKEMKERGCKADIVT 381 (521)
Q Consensus 324 ~~~~A~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~------------~~~~~~~~~~~~~~~~ 381 (521)
|...+.++|++.... .-..+...-.++-..|....|++.-.. +-.++.++ +..-
T Consensus 380 Dh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH----eL~e 455 (624)
T 3lvg_A 380 DHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIE 455 (624)
T ss_dssp CSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC----SSHH
T ss_pred ChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC----chHH
Confidence 444444444432110 001123333445556666666654322 22222222 1122
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009977 382 F-NIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLC 460 (521)
Q Consensus 382 ~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 460 (521)
| ......|.++++++++..+.++ ...|.-.|......|+.+-|.++++-.++.| +..+|.+.+..|.
T Consensus 456 FRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCY 523 (624)
T 3lvg_A 456 FRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCY 523 (624)
T ss_dssp HHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHh
Confidence 2 2233445566667666544321 1122223344456677777777777666543 3345555555555
Q ss_pred hcCCHHHHHHH
Q 009977 461 KAGMAEDAAIA 471 (521)
Q Consensus 461 ~~g~~~~a~~~ 471 (521)
..=+++-++++
T Consensus 524 dLlrpDvVlEl 534 (624)
T 3lvg_A 524 DLLRPDVVLET 534 (624)
T ss_dssp SSSSCHHHHHH
T ss_pred hccChHHHHHH
Confidence 55555555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.55 E-value=1.4 Score=41.43 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHhhhc----CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 180 NQVDLAQNFLKYSNQH----LRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKK 230 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 230 (521)
|+++.|++.+..+.+. ............++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5666666555444321 12223345566666667677777666665555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.61 Score=34.64 Aligned_cols=60 Identities=17% Similarity=-0.001 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 009977 453 NELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 453 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
+..++.+...|+-++-.+++..++.. -+|+++....+..+|.+.|+..+|.+++.++-++
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33444445555555555554443221 1344455555555555555555555555555444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.5 Score=35.93 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 009977 323 GKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKA 377 (521)
Q Consensus 323 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 377 (521)
++.++|.++|+.+....-.- ...|......-.+.|+...|.+++...+..+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666666666665432122 5555555555566777777777777766666553
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.06 E-value=2 Score=39.26 Aligned_cols=169 Identities=7% Similarity=0.010 Sum_probs=79.9
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHh---HHHHHHHHHHhcC-CHHHHHH----HHHHhhhcCCCCCcHH
Q 009977 132 IFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLK---AISTCLNLLIESN-QVDLAQN----FLKYSNQHLRLKPNTC 203 (521)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~-~~~~a~~----~~~~~~~~~~~~~~~~ 203 (521)
+...+...|.+.|+.++..+++.........-+... ....+++.+.... ..+.-.+ .++....+...-....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666543322222222 2334444444322 2222222 2222221100000001
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCHHHHH
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP----NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQ-ILPDALTYN 278 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 278 (521)
.=..++..|...|++.+|.+++.++.+.-.... -...+..-+..|...+++.++...+........ +.+++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 223567777778888888777777655211101 123344555667777777777777766643211 223332221
Q ss_pred HH----HHHHH-hCCCHHHHHHHHHHH
Q 009977 279 VL----IDGFC-RGGKVDRAKKIMEFM 300 (521)
Q Consensus 279 ~l----~~~~~-~~~~~~~a~~~~~~~ 300 (521)
.+ +..+. ..+++..|...|-+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11 12234 566777776666544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.83 Score=33.97 Aligned_cols=140 Identities=13% Similarity=0.106 Sum_probs=95.5
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHH
Q 009977 69 IKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHER 148 (521)
Q Consensus 69 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (521)
+.-.|..++..++..+.... .+..-||.++-.....-+-+-..++++.+-+. .| ...+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHH
Confidence 34467888888888777543 25556677776666555555555555554321 22 134666667
Q ss_pred HHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009977 149 VLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEM 228 (521)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 228 (521)
.+..+-.+ ..+...+...+..+...|+-+.-.+++..+.. ..+|++.....+..+|.+.|+..+|.+++.+.
T Consensus 80 Vi~C~~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 80 VVECGVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 77666555 33455667778888888888888888887543 45677888888888888888888888888888
Q ss_pred HhCCC
Q 009977 229 KKSQM 233 (521)
Q Consensus 229 ~~~~~ 233 (521)
.+.|.
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 88776
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.17 Score=50.61 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=29.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHH
Q 009977 458 RLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDEL 510 (521)
Q Consensus 458 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 510 (521)
.|...|+++.|+.+-++..... +.+..+|..|+++|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3444566666666666555432 233456666666666666666666666555
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.33 Score=35.86 Aligned_cols=70 Identities=19% Similarity=0.117 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 447 PHYATSNELLVRLCKAGMAED---AAIALFGLVEMGFKP--ESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 447 p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
|+..+-..+..++.+.....+ ++.+++.+.+.+ .| .......|.-++.+.|++++|.++++.+++..|++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 444444445555555554433 555555544432 12 12334444455555555555555555555555544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.21 Score=38.78 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=12.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 009977 243 TLIDGLCKNGRFREAIELFEEMV 265 (521)
Q Consensus 243 ~l~~~~~~~g~~~~A~~~~~~~~ 265 (521)
.+..+|.+.+++++|+.+++.+.
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 34455555555555555555443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=4.2 Score=39.88 Aligned_cols=80 Identities=9% Similarity=-0.048 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHH
Q 009977 131 GIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIK 210 (521)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (521)
.....-+..+.+.+++...+..+.. .+.+...-.....+....|+.++|....+.+=...... +..+..++.
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~--p~~c~~l~~ 144 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ--PNACDKLFS 144 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC--CTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--cHHHHHHHH
Confidence 3334455556666777666653321 13333444445666666777666665555443322222 234555555
Q ss_pred HHHhcCCh
Q 009977 211 HHCKRGTL 218 (521)
Q Consensus 211 ~~~~~g~~ 218 (521)
.+.+.|.+
T Consensus 145 ~~~~~g~l 152 (618)
T 1qsa_A 145 VWRASGKQ 152 (618)
T ss_dssp HHHHTTCS
T ss_pred HHHHCCCC
Confidence 55555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.69 Score=46.24 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=40.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEM 335 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 335 (521)
...+...|+++-|+++-++....- +.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445666788888888888887763 455667888888888888888888777665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=1.6 Score=40.22 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 009977 383 NIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLM 440 (521)
Q Consensus 383 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (521)
..++..+...|+++++...+..+....+ .+...+..++.++.+.|+..+|++.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444555555544444443322 14444444555555555555555444443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=9.5 Score=37.39 Aligned_cols=116 Identities=9% Similarity=-0.016 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHH
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNII----LGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKA 433 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 433 (521)
.+.+.|...+....+.... +......+ +......+...++...+....... .+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 4788999999888654322 33332222 223333443456666666655442 2333344444444567999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 434 IELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 434 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
...|+.|.... ........-+.+++...|+.++|..+|+++..
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998886421 12344455677788889999999999988874
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.97 E-value=6.4 Score=42.19 Aligned_cols=172 Identities=10% Similarity=0.105 Sum_probs=103.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhc
Q 009977 100 TILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIES 179 (521)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 179 (521)
.++..+...+.++-+.++.... +.++.....++++|...|++++|.+.|++... +...+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhh----------
Confidence 4566677778777776655443 23344445677788888999999999887642 111111000
Q ss_pred CCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CC--HHHHHHHHHHHHhcCChHH
Q 009977 180 NQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSY-PN--LITYSTLIDGLCKNGRFRE 256 (521)
Q Consensus 180 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~ 256 (521)
........+... ......-..-|..++..+.+.|.++.+.++-....+..... ++ ...|..+.+.+...|++++
T Consensus 880 ~~~~~~~~~~~~---~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 880 AVLREFQEIAEK---YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SSHHHHHHHHHT---TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhhccccccccc---ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 000111111110 00112234567778888888888888888877766543321 11 2257888888899999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009977 257 AIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 257 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (521)
|...+-.+.... --...+..++...+..|..+.-.
T Consensus 957 Ay~aL~~~pd~~---~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 957 AHVALMVLSTTP---LKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp GGHHHHHHHHSS---SCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHhCCCHH---HHHHHHHHHHHHHHhCCChhhhh
Confidence 988888776542 23456777777777777665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.73 E-value=2.8 Score=32.59 Aligned_cols=60 Identities=7% Similarity=-0.089 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCH-------HHHHHHHHHHHhcCCchHHHHHHHHhhh
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNN-------ATYATILDKLARYKKFEAVDAVLRQMTY 123 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (521)
.-+..+...+.++.|+-+.+.+....+..++. .+...+.+++...|++.+|...|++.++
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34556778888988888877754332223331 3566677888899999999999988654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.94 Score=41.69 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 348 TTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKL 405 (521)
Q Consensus 348 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 405 (521)
..++..+...|++++|+..+..+....+- +...+..++.++.+.|+..+|++.|+.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444555544444444443221 3444444444555555555554444443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.05 E-value=8.2 Score=41.36 Aligned_cols=153 Identities=13% Similarity=0.115 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQ--------------- 232 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------- 232 (521)
....++..+...+.++.+.++.... +.++.....++.+|...|++++|.+.|.+....-
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~ 887 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQE 887 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccc
Confidence 3445666777788888887766544 2345555677888999999999999997742110
Q ss_pred ------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-C--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 233 ------MSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP-D--ALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 233 ------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
....-..-|..++..+.+.|.++.++++-..+++..+..+ + ...|..+.+.+...|++++|...+-.+...
T Consensus 888 ~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 888 IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 0001234578889999999999999999888876532111 1 125788899999999999999999888765
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHH
Q 009977 304 GCNPNVFNYTTLMNGFCKEGKLQEA 328 (521)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~~A 328 (521)
.. -......|+...+..|..+.-
T Consensus 968 ~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 968 PL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp SS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HH--HHHHHHHHHHHHHhCCChhhh
Confidence 43 345666777777766665443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.97 E-value=0.9 Score=38.55 Aligned_cols=51 Identities=8% Similarity=-0.018 Sum_probs=28.6
Q ss_pred HHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhh
Q 009977 105 LARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKI 156 (521)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 156 (521)
+.+.|++++|++....-++.. |.+......++..++-.|++++|.+-++.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555566655555555543 445555555666666666666665555544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.54 E-value=8.8 Score=33.97 Aligned_cols=81 Identities=15% Similarity=0.001 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVE 492 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 492 (521)
|+.....+...|.+.+++.+|...| +. |-.+.+..+..++..+...+...++ +...... +-
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~--il--g~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRa-VL 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL--VL--GTKESPEVLARMEYEWYKQDESHTA--------------PLYCARA-VL 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH--TT--SCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHH-HH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH--Hh--cCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHH-HH
Confidence 5566667777777888887777665 22 3344445554444444333321111 1111122 22
Q ss_pred HHHccCcHHHHHHHHHHHHH
Q 009977 493 LICRGRKLLFAFELLDELVI 512 (521)
Q Consensus 493 ~~~~~g~~~~A~~~~~~m~~ 512 (521)
-|.-.++...|..+++...+
T Consensus 196 ~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34556677777776665554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.15 E-value=2.5 Score=35.88 Aligned_cols=57 Identities=19% Similarity=0.133 Sum_probs=49.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhcc
Q 009977 67 SLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYET 125 (521)
Q Consensus 67 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (521)
..+.+.|++++|++.....++.. |-|...-..+++.++-.|+++.|.+-++...+.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 45678899999999998887765 6788888899999999999999999999998775
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.82 E-value=4.8 Score=29.88 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=27.2
Q ss_pred cHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 378 DIVTFNIILGGLCREGK---IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 378 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
+..+--.+..++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333334444444432 22344444444443321122333334444455555555555555555
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.23 E-value=3.6 Score=28.74 Aligned_cols=72 Identities=7% Similarity=0.067 Sum_probs=53.1
Q ss_pred HHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009977 421 LNFSCQKG-ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVEL 493 (521)
Q Consensus 421 ~~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (521)
...+.+.. +.=+..+-++.+....+.|++.+..+.+++|.+..++..|.++++-....- .+...+|..+++-
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 33344444 566777888888877889999999999999999999999999998877321 2334567766654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.19 E-value=2.8 Score=39.15 Aligned_cols=99 Identities=11% Similarity=0.003 Sum_probs=50.2
Q ss_pred HHHHHHHHHHccCcHHHHHHHHHhhccccC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHH----HH
Q 009977 132 IFLNLMKHFSNCSLHERVLEMFHKIHPITR-EKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCI----FN 206 (521)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ 206 (521)
+...++..|.+.|++++|.+.|.++..... ...-...+...++.+...+++..+...+.++.....-.+++.. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 444556666666666666666665543211 1222344555566666666666666666655321111122111 11
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 009977 207 ILIKHHCKRGTLESAFEVLKEMKK 230 (521)
Q Consensus 207 ~l~~~~~~~g~~~~A~~~~~~~~~ 230 (521)
.-+..+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 223334556777777776666544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.05 E-value=13 Score=32.60 Aligned_cols=165 Identities=13% Similarity=0.081 Sum_probs=82.8
Q ss_pred HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHH----HHHhhhcCCCCCcHHHHHHHHH
Q 009977 135 NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNF----LKYSNQHLRLKPNTCIFNILIK 210 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~l~~ 210 (521)
++..-|.+.+++++|++++..- ...+.+.|+...|.++ ++.+ ...+.+++......++.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g----------------a~~ll~~~Q~~sa~DLa~llvev~-~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG----------------ALSFLKAKQGGSGTDLIFYLLEVY-DLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHH
Confidence 3344466667777777765443 1223444555444332 2222 22356666666666666
Q ss_pred HHHhcCChH-HHHHHHHHH----HhCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 211 HHCKRGTLE-SAFEVLKEM----KKSQM-SYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 211 ~~~~~g~~~-~A~~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
.+.....-+ .=.++++++ .+.|. +..++..+..++..|.+.|++.+|...|-.- ..-|...+..++.-+
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-----~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-----THDSMIKYVDLLWDW 175 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-----CHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 655433211 112222222 22221 2357788888888888888888888877421 111344455554444
Q ss_pred HhC---CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 285 CRG---GKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 285 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
... |...++--++- . .+-.|.-.++...|..+++...
T Consensus 176 ~~~~~~~~~~e~dlf~~--------------R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFS--------------R-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHHHHHHH--------------H-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHH--------------H-HHHHHHHhcCHHHHHHHHHHHH
Confidence 433 33333211111 1 1223445677777777776553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.36 E-value=5.8 Score=27.72 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=55.1
Q ss_pred HHHHHHHHHH-hcC-CHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 381 TFNIILGGLC-REG-KIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLV 457 (521)
Q Consensus 381 ~~~~l~~~~~-~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 457 (521)
-|..--..|. +.. +.-+..+-++.+...+.-|++......+.+|.+.+++.-|.++++-+..+ ..+...+|..++.
T Consensus 10 eF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 10 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3444334444 333 56677788888888888999999999999999999999999999888753 3333455666654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.96 E-value=8.2 Score=29.08 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=27.1
Q ss_pred CcHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009977 377 ADIVTFNIILGGLCREGK---IEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
|+..+--.+..++.+..+ ..+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333343334444444432 22344444444443221122222233334445555555555555555
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.46 E-value=16 Score=32.01 Aligned_cols=80 Identities=16% Similarity=0.054 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCccCHHHHHH
Q 009977 343 DTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCRE---GKIEEALGMLEKLWYDGIYLNKASYRI 419 (521)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 419 (521)
++.....+...|.+.+++.+|...|-. |-.-+...+..++.-+... |...++- ...-..
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHH
Confidence 566777777778888888887765531 1111344444444443333 3332221 111122
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 009977 420 VLNFSCQKGELEKAIELLRLML 441 (521)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~ 441 (521)
++. |.-.|+...|..+++...
T Consensus 195 VL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH-HHHTTBHHHHHHHHHHHH
T ss_pred HHH-HHHhcCHHHHHHHHHHHH
Confidence 222 345677777777777654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.87 E-value=18 Score=32.00 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009977 343 DTIGYTTLINCFCRAGRVDEALELL 367 (521)
Q Consensus 343 ~~~~~~~l~~~~~~~~~~~~A~~~~ 367 (521)
|+.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4566666777777777777777665
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.09 E-value=9.8 Score=28.23 Aligned_cols=63 Identities=8% Similarity=0.071 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009977 429 ELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVE 492 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 492 (521)
|.-+..+-++.+....+.|++.+..+.+++|.+..++..|.++++-....- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 333455555555555666777777777777777777777777776655321 223344555543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.91 E-value=9 Score=35.67 Aligned_cols=61 Identities=10% Similarity=-0.006 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 311 NYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKP--DTIGYTTLINCFCRAGRVDEALELLKEMK 371 (521)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 371 (521)
+...++..|.+.|+++.|.+.+.++......+ -...+-..+..+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455555555555555555555554321111 13444445555555555555555555543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.13 E-value=27 Score=31.83 Aligned_cols=295 Identities=11% Similarity=0.033 Sum_probs=155.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc---HHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCCHHHH--
Q 009977 168 AISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPN---TCIFNILIKHHCKRG-TLESAFEVLKEMKKSQMSYPNLITY-- 241 (521)
Q Consensus 168 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~-- 241 (521)
+...+...|.+.|+.++...++.....-.+.-+- ......++..+.... ..+.-.++..+..+... .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--HTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 5667888999999999999999877533222222 335667777776643 33444455544443211 111223
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCcch
Q 009977 242 ----STLIDGLCKNGRFREAIELFEEMVSKDQILPD----ALTYNVLIDGFCRGGKVDRAKKIMEFMKNN--GCNPNVFN 311 (521)
Q Consensus 242 ----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 311 (521)
..++..|...|++.+|.+++.++.+.-.-..| ...+..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25788999999999999999888764211111 234566677888899999999999877642 22233332
Q ss_pred HH----HHHHHHH-hcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCcH
Q 009977 312 YT----TLMNGFC-KEGKLQEAKEVFDEMKNFLLKPD------TIGYTTLINCFCRAGRVDEALELLK-EMKERGCKADI 379 (521)
Q Consensus 312 ~~----~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~~~~~ 379 (521)
.. .-+..+. ..+++..|...|-+..+.--..+ ...|..+ .+.. .++..+.-.++. .....-..|+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl-~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIM-LGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHH-TTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHH-cCCHHHHHHHhccccccccCCccH
Confidence 22 1233455 78899999888766532100111 1123222 2222 233222222221 11111123555
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 009977 380 VTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVR 458 (521)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 458 (521)
..+..++.+| ..+++.+...+++..... +..|+.....+-..+. . --...+..+. .| ...++..+...
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~--~---Ir~~~L~~i~----~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYD--T---MLEQNLCRII----EPYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHH--H---HHHHHHHHHH----TTCSEEEHHHHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHH--H---HHHHHHHHHh----HhhceeeHHHHHHH
Confidence 5566666654 456777766666654332 3334432111100000 0 0011111222 23 33444445444
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 009977 459 LCKAGMAEDAAIALFGLVEMG 479 (521)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~~ 479 (521)
+.- ..++++..+-+|...|
T Consensus 326 l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTT
T ss_pred HCc--CHHHHHHHHHHHHHCC
Confidence 432 5678888888887644
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.39 E-value=8.2 Score=28.62 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccC
Q 009977 464 MAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGT 517 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 517 (521)
|.-+..+-++.+...++-|++......++++.+.+|+.-|.++|+-+..|-+..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~ 121 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 121 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc
Confidence 445677778888888899999999999999999999999999999998876443
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.93 E-value=19 Score=29.07 Aligned_cols=67 Identities=18% Similarity=0.112 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILP 272 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 272 (521)
.|...+..+ ..+...++.++|..|...++...-...|......+...|++.+|.++|+.-++. +..|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 444444433 244567889999999888877667788888888889999999999999988876 3455
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 521 | ||||
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.003 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.003
Identities = 22/236 (9%), Positives = 46/236 (19%), Gaps = 12/236 (5%)
Query: 248 LCKNGRFREAIELFEEMVSKDQILPDALT-----------YNVLIDGFCRGGKVDRAKKI 296
+ G A+ LFE V +D +A + I R ++ +
Sbjct: 29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 88
Query: 297 MEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR 356
+ + ++
Sbjct: 89 ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 148
Query: 357 AGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKAS 416
E EL + LG L + +
Sbjct: 149 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 208
Query: 417 YRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIAL 472
+ + + E+A+ R + + L + G +A
Sbjct: 209 WNKLGATLANGNQSEEAVAAYRRA-LELQPGYIRSRYNLGISCINLGAHREAVEHF 263
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 521 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.74 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.45 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.43 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.41 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.35 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.32 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.3 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.29 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.29 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.28 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.96 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.88 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.84 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.81 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.79 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.78 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.74 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.7 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.58 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.54 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.53 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.51 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.4 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.4 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.39 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.28 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.23 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.18 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.15 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.13 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.11 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.98 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.94 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.89 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.85 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.85 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.79 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.7 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.65 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.4 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.37 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.32 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.83 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.65 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.4 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.72 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.24 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.0 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.78 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.33 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.86 | |
| d2r9ga1 | 186 | Uncharacterized protein EfaeDRAFT_0938 {Enterococc | 84.94 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.5e-24 Score=202.84 Aligned_cols=382 Identities=14% Similarity=0.076 Sum_probs=196.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccC
Q 009977 65 AISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCS 144 (521)
Q Consensus 65 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (521)
+...+.+.|++++|++.|+++++.. |.+...+..+..++.+.|++++|...+++.++.+ |.+..++..++..|...|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence 4455667777888888887776543 4456677777777777777777777777777665 445667777777777777
Q ss_pred cHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 009977 145 LHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEV 224 (521)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 224 (521)
++++|++.+...... ..................+....+.......... ..................+....+...
T Consensus 82 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccccccccccc--ccccccccccccccccccchhhhhHHH
Confidence 777777777766532 2222233333333333333333333333322221 122233333344444445555555555
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 225 LKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
+.......+ .+...+..++..+...|++++|...+++..... +.+...+..+...+...|++++|...++.....+
T Consensus 158 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 233 (388)
T d1w3ba_ 158 YLKAIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHhhccCc--chhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh
Confidence 555444443 344445555555555555555555555554432 2334444555555555555555555555544433
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHH
Q 009977 305 CNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNI 384 (521)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 384 (521)
+.+...+..+...+.+.|++++|+..|++ +.+..+. +..++..
T Consensus 234 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-----------------------------------al~~~p~-~~~~~~~ 276 (388)
T d1w3ba_ 234 -PNHAVVHGNLACVYYEQGLIDLAIDTYRR-----------------------------------AIELQPH-FPDAYCN 276 (388)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------------------HHHTCSS-CHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHCCCHHHHHHHHHH-----------------------------------HHHhCCC-CHHHHHH
Confidence 23333444444444455555555555544 4443322 3344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 009977 385 ILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAG 463 (521)
Q Consensus 385 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 463 (521)
+...+...|++++|...++....... .+...+..+...+...|++++|+..|+++++ +.| +..++..+..++.+.|
T Consensus 277 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g 353 (388)
T d1w3ba_ 277 LANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 44455555555555555544444322 2344444445555555555555555555542 233 3444455555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 009977 464 MAEDAAIALFGLVEMGFKPESDSWALLVELICRGR 498 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 498 (521)
++++|...|+++++.. +-+...|..++.+|.+.|
T Consensus 354 ~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 354 KLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 5555555555555432 112344555555555444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.4e-24 Score=199.61 Aligned_cols=369 Identities=14% Similarity=0.052 Sum_probs=296.1
Q ss_pred HHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhc
Q 009977 136 LMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKR 215 (521)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (521)
+...+.+.|++++|++.|+++.+. .+.+..++..+..++...|++++|...++++++. .+.+..++..++.+|.+.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhh
Confidence 445566677777777777776532 2334566677777777778888888777777653 234567888899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 009977 216 GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKK 295 (521)
Q Consensus 216 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 295 (521)
|++++|...+.......+ .+...+..........+....+........... .................+....+..
T Consensus 81 g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred cccccccccccccccccc--ccccccccccccccccccccccccccccccccc--cccccccccccccccccchhhhhHH
Confidence 999999999999888776 456666666666777777777777776665543 3444555666667778888888888
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009977 296 IMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGC 375 (521)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 375 (521)
.+....... +.+...+..+...+...|++++|...+.+..+... .+...+..+...+...|++++|+..++.....+.
T Consensus 157 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 234 (388)
T d1w3ba_ 157 CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh
Confidence 888887764 55667888889999999999999999998887432 2477888999999999999999999999988765
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009977 376 KADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNEL 455 (521)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 455 (521)
. +...+..+...+.+.|++++|...|+++.+..+. +..++..+...+...|++++|++.++.+... .+.+...+..+
T Consensus 235 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l 311 (388)
T d1w3ba_ 235 N-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNL 311 (388)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHH
Confidence 4 6778888999999999999999999999987544 6788999999999999999999999998864 34578888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCccCc
Q 009977 456 LVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESGTI 518 (521)
Q Consensus 456 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 518 (521)
...+...|++++|...++++++.. +.+..++..++.+|.+.|++++|.+.|+++++.+|.+.
T Consensus 312 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~ 373 (388)
T d1w3ba_ 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999998763 33467888999999999999999999999999888754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2e-15 Score=136.43 Aligned_cols=243 Identities=14% Similarity=0.031 Sum_probs=142.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHcc
Q 009977 64 AAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNC 143 (521)
Q Consensus 64 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (521)
.....+.+.|++++|+..|+++++.. |.+..+|..++.++...|++++|...+++..+.. |-+...+..++..|...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 45667889999999999999998765 5678899999999999999999999999999876 56778889999999999
Q ss_pred CcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 009977 144 SLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFE 223 (521)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 223 (521)
|++++|++.+++.....+.............. ..+.......+..+...+.+.+|.+
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAG-----------------------GAGLGPSKRILGSLLSDSLFLEVKE 157 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC--------------------------------------CTTHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhh-----------------------hcccccchhhHHHHHHhhHHHHHHH
Confidence 99999999999875422221111000000000 0000001111112223333444555
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 224 VLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
.|.+.....+...+...+..++..+...|++++|+..|++..... +-+...|..+..++...|++++|.+.|+++++.
T Consensus 158 ~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 235 (323)
T d1fcha_ 158 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 235 (323)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHH
Confidence 554444443332344445555555555555555555555554432 233444555555555555555555555555543
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 304 GCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEM 335 (521)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 335 (521)
. +.+..++..++.+|.+.|++++|+..|++.
T Consensus 236 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 266 (323)
T d1fcha_ 236 Q-PGYIRSRYNLGISCINLGAHREAVEHFLEA 266 (323)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred h-hccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 233444555555555555555555555544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.5e-15 Score=137.35 Aligned_cols=243 Identities=12% Similarity=0.008 Sum_probs=162.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFC 285 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (521)
...+..+.+.|++++|...|+++.+..| .+..+|..++.++...|++++|+..|+++.+.. +-+...+..++..|.
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--ccccccccccccccc
Confidence 3567788899999999999999998887 578889999999999999999999999988764 456778888889999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcchH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009977 286 RGGKVDRAKKIMEFMKNNGCNPNVFNY-TTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEAL 364 (521)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 364 (521)
..|++++|.+.++.+.... |+.... ........ . .+.......+..+...+.+.+|.
T Consensus 99 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~a~ 156 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-G-------------------AGLGPSKRILGSLLSDSLFLEVK 156 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHhc--cchHHHHHhhhhhhh-h-------------------cccccchhhHHHHHHhhHHHHHH
Confidence 9999999999999888753 222111 00000000 0 00000111112223344556666
Q ss_pred HHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 365 ELLKEMKERGC-KADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 365 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
..+.+..+..+ ..+...+..+...+...|++++|...+++.....+. +...|..+...|...|++++|++.|+++++.
T Consensus 157 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 235 (323)
T d1fcha_ 157 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL 235 (323)
T ss_dssp HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHH
Confidence 66666655432 224556666677777777777777777777665433 4566777777777777777777777777643
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 444 GFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 444 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
.| +..++..++.+|.+.|++++|+..|++.++
T Consensus 236 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 236 --QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44 556677777777777777777777777665
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=9e-11 Score=106.78 Aligned_cols=297 Identities=14% Similarity=0.041 Sum_probs=149.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC----HHHHHHHH
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPN---LITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD----ALTYNVLI 281 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~ 281 (521)
...+...|++++|++++++..+..+..++ ...+..++.++...|++++|+..|++........++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 44455556666666666555554432111 223444555555666666666666555432111111 22334444
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc----CCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHH
Q 009977 282 DGFCRGGKVDRAKKIMEFMKNN----GCNPN---VFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLK----PDTIGYTTL 350 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l 350 (521)
..+...|++..+...+...... +.... ...+..+...+...|+++.+...+......... .....+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 5555666666666655554431 11111 113334455566666666666666555432111 113334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCc---cCHHHHHHHH
Q 009977 351 INCFCRAGRVDEALELLKEMKER----GCKA--DIVTFNIILGGLCREGKIEEALGMLEKLWYDGIY---LNKASYRIVL 421 (521)
Q Consensus 351 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~ 421 (521)
...+...++...+...+.+.... +..+ ....+..+...+...|++++|...++........ .....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 45555666666666665554432 1111 1123444555566667777777776665543221 1223344556
Q ss_pred HHHHcCCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC----CCHHHHH
Q 009977 422 NFSCQKGELEKAIELLRLMLC----RGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM----GFK----PESDSWA 488 (521)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~----~~~~~~~ 488 (521)
.++...|++++|...+++++. .+..| ....+..+..+|.+.|++++|...+++.++. |.. .....+.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~ 338 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 338 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence 666677777777777766652 23333 3345556666777777777777777666542 211 0122344
Q ss_pred HHHHHHHccCcHHHHHH
Q 009977 489 LLVELICRGRKLLFAFE 505 (521)
Q Consensus 489 ~l~~~~~~~g~~~~A~~ 505 (521)
.++..+...++.+++.+
T Consensus 339 ~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 339 QQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhcCCChHHHH
Confidence 45555566666666544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=5.5e-11 Score=105.66 Aligned_cols=199 Identities=8% Similarity=0.021 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG-RFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
..+++.+...+.+.+.+++|+++++++.+.+| .+...|+..+.++...| ++++|+..+++++... +-+..+|..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP--~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~ 118 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHH
Confidence 45777778888888888888888888888877 57788888888887766 4788888888887763 5567788888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 009977 281 IDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGR- 359 (521)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 359 (521)
...+.+.|++++|++.++.+++.. +.+..+|..++..+...|++++|++.++++.+..+. +...|+.+...+.+.+.
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred hHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHcccc
Confidence 888888888888888888888775 556778888888888888888888888888774322 46677776666655554
Q ss_pred -----HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 360 -----VDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYD 408 (521)
Q Consensus 360 -----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 408 (521)
+++|+..+..+++..+. +...|..+...+... ..+++.+.++...+.
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLNQLLDL 248 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHHHHHHh
Confidence 45677777776666443 555666555544333 345566666655543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1.3e-10 Score=105.76 Aligned_cols=274 Identities=15% Similarity=0.046 Sum_probs=199.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----cch
Q 009977 240 TYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD---ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCN-PN----VFN 311 (521)
Q Consensus 240 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 311 (521)
........+...|++++|++++++.++..+..++ ...+..+..++...|++++|...+++..+.... ++ ...
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3444567788999999999999999876322111 346777888999999999999999988763211 11 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCcHh
Q 009977 312 YTTLMNGFCKEGKLQEAKEVFDEMKN----FLLKPD---TIGYTTLINCFCRAGRVDEALELLKEMKERGC----KADIV 380 (521)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~ 380 (521)
+..+...+...|++..+...+..... ...... ...+..+...+...|+++.+...+........ .....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 56677888999999999999887643 111111 23556677788899999999999988876432 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCcc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHH
Q 009977 381 TFNIILGGLCREGKIEEALGMLEKLWYD----GIYL--NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP---HYAT 451 (521)
Q Consensus 381 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~ 451 (521)
++......+...++...+...+...... +..+ ....+..+...+...|++++|...++...+..... ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5566677788889999999888876542 1111 12345566677888999999999999887542222 3345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHccCcHHHHHHHHHHHHHc
Q 009977 452 SNELLVRLCKAGMAEDAAIALFGLVE----MGFKPES-DSWALLVELICRGRKLLFAFELLDELVIK 513 (521)
Q Consensus 452 ~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 513 (521)
+..+..++...|++++|...+++++. .+..|+. ..+..+..+|.+.|++++|.+.+++.++.
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56678899999999999999998763 3434443 57778889999999999999999998763
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.5e-11 Score=107.93 Aligned_cols=213 Identities=11% Similarity=0.028 Sum_probs=128.8
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC-CchHHHHHHHHhhhccCCcCHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYK-KFEAVDAVLRQMTYETCKFHEGIFLNLMKH 139 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (521)
.++.+...+.+.+.+++|++.++++++.. |-+...|+....++...| ++++|...++..++.+ |-+..+|..+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 55667777778888888888888887664 556677888888877766 4788888888887775 5567777777777
Q ss_pred HHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCC--
Q 009977 140 FSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGT-- 217 (521)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 217 (521)
+.+.|++++|++.++++.. ..+.+..+|..+..++...|++++|+..++++++. -+.+..+|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccc
Confidence 8888888888887777753 23444555666666666666666666666665542 22344555555555444443
Q ss_pred ----hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 218 ----LESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 218 ----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
+++|++.+.+..+..| .+...|+.+...+.. ...+++.+.++...+......+...+..++..
T Consensus 198 ~~~~~~~ai~~~~~al~~~P--~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 264 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVP--HNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDI 264 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCC--CchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 3455555555555554 345555544443322 22445555555554432222333333344333
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=3.8e-10 Score=100.08 Aligned_cols=190 Identities=11% Similarity=0.088 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 325 LQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEK 404 (521)
Q Consensus 325 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 404 (521)
.++|..+|++..+.....+...|...+..+...|+++.|..+|+++++.........|...+..+.+.|+.+.|..+|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 35555566555543233334455555555556666666666666665543332233455556666666666666666666
Q ss_pred HHHCCCccCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 009977 405 LWYDGIYLNKASYRIVLNF-SCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMG-FKP 482 (521)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 482 (521)
+.+.+.. +...|...+.. +...|+.+.|..+|+.+++. .+.+...+..++..+...|+++.|..+|++.++.. ..|
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 6554332 22333332222 22345666666666666643 22345556666666666666666666666665432 122
Q ss_pred C--HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 483 E--SDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 483 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
+ ...|...+..-...|+.+.+.++++++.+.-+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 2 234555555555566666666666666555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.1e-10 Score=101.08 Aligned_cols=130 Identities=13% Similarity=-0.019 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
.++..++.+|.+.|++++|.+.|++..+..+ .+..+|..++.++...|++++|++.|+++++.. +.+..++..+..
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCC--CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH--hhhhhhHHHHHH
Confidence 3566667777777777777777777777665 466777777777777777777777777777653 334556677777
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009977 283 GFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
++...|++++|.+.|+..++.. +.+......+...+.+.+..+.+..+......
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 7777777777777777777654 33333333344444444544444444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=1.6e-11 Score=110.81 Aligned_cols=215 Identities=6% Similarity=-0.060 Sum_probs=114.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHhCCCHHH
Q 009977 216 GTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG--RFREAIELFEEMVSKDQILPDALTYN-VLIDGFCRGGKVDR 292 (521)
Q Consensus 216 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ 292 (521)
|++++|+..++...+..+ .+...|..+..++...+ ++++|+..++++...+ +++...+. .....+...+.+++
T Consensus 87 ~~~~~al~~~~~~l~~~p--k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHH
Confidence 345666666666666555 45556665555555544 3566666666666542 33444433 33344555666666
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 293 AKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKE 372 (521)
Q Consensus 293 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 372 (521)
|+..++.+++.. +.+...|..+..++.+.|++++|...+...... .|+ .......+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 163 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 666666666654 445556666666666666666554444332221 010 11122223344555555555555554
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009977 373 RGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLC 442 (521)
Q Consensus 373 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (521)
.... +...+..++..+...|+.++|...+.+.....+. +..++..+..++...|++++|++.++++++
T Consensus 237 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 237 GRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp SCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4322 3334444455555556666666666655544322 344555555666666666666666666653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=1.3e-09 Score=96.55 Aligned_cols=187 Identities=12% Similarity=0.009 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009977 289 KVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLK 368 (521)
Q Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 368 (521)
..++|..+|++.++...+.+...+...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34667777777776543445556666777777778888888888777764333334567777777777788888888888
Q ss_pred HHHHcCCCCcHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CC
Q 009977 369 EMKERGCKADIVTFNIILGG-LCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRG-FL 446 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~ 446 (521)
.+.+.++. +...|...+.. +...|+.+.|..+|+.+....+ .+...|...+..+...|+.+.|..+|+++++.. ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p-~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 77766443 33334333332 3345777888888887777532 256677777777778888888888888877642 33
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 447 P--HYATSNELLVRLCKAGMAEDAAIALFGLVE 477 (521)
Q Consensus 447 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 477 (521)
| ....|...+..-...|+.+.+..+++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 244677777766777888888888877765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=4.8e-11 Score=103.32 Aligned_cols=219 Identities=10% Similarity=-0.087 Sum_probs=134.8
Q ss_pred CChHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 009977 252 GRFREAIELFEEMVSKDQILP--DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAK 329 (521)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 329 (521)
++.+.++.-+++........+ ...++..+..+|.+.|++++|+..|++.++.. +.++.+|..++.+|.+.|++++|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhh
Confidence 345667777777776532222 23466777788888888888888888888765 556778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009977 330 EVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDG 409 (521)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 409 (521)
..|+++.+.... +..++..+..+|...|++++|...|+...+..+. +......+...+.+.+..+.+..+........
T Consensus 92 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 92 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 888888774322 3567777788888888888888888888776533 44444444445555555555555555444432
Q ss_pred CccCHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 410 IYLNKASYRIVLNFSCQKGELE----KAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.. ...+. ++..+....... .+...+.... ...| ...++..+...+...|++++|...|++.++.
T Consensus 170 ~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 170 KE--QWGWN-IVEFYLGNISEQTLMERLKADATDNT--SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp CC--STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hh--hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhh--hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 22 11222 222222222222 2222111111 1122 2345556777777888888888888877765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=3.7e-11 Score=108.30 Aligned_cols=275 Identities=7% Similarity=-0.096 Sum_probs=194.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----------HhcCChHHHHHHHHHHHhcCCCCCCHH
Q 009977 206 NILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGL----------CKNGRFREAIELFEEMVSKDQILPDAL 275 (521)
Q Consensus 206 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~A~~~~~~~~~~~~~~~~~~ 275 (521)
..++......+..++|+++++++....| .+...|+.....+ ...|++++|+.+++.....+ +-+..
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P--~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~ 108 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYG 108 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHH
Confidence 3333333344445889999999888776 4555665433332 33455789999999998763 55677
Q ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCcchHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009977 276 TYNVLIDGFCRGG--KVDRAKKIMEFMKNNGCNPNVFNYT-TLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLIN 352 (521)
Q Consensus 276 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 352 (521)
.|..+..++...+ ++++|...+..+.+.. +.+...+. .....+...+.+++|+..++.+.+..+. +...|+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~ 186 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 7777777777665 5889999999998875 44555544 4556777889999999999988875433 6888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHH
Q 009977 353 CFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEK 432 (521)
Q Consensus 353 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (521)
.+.+.|++++|...+....+.. |+ ...+...+...+..+++...+........ ++...+..++..+...|+.++
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHH
Confidence 9999999988876665544431 11 12233344556667778888887776643 244556666777777889999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc
Q 009977 433 AIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPES-DSWALLVELICR 496 (521)
Q Consensus 433 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 496 (521)
|...+.+..+ ..| +..++..++.++...|++++|...++++.+. .|+. ..|..|...+.-
T Consensus 261 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 261 SCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHhH
Confidence 9999988874 345 6677788888999999999999999999886 4644 556666555553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=3.2e-08 Score=86.46 Aligned_cols=164 Identities=11% Similarity=-0.023 Sum_probs=87.0
Q ss_pred HHHHhcCCHHHHHHHHHHhhhc---CCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----CHHHHHHHH
Q 009977 174 NLLIESNQVDLAQNFLKYSNQH---LRLKPN-TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYP----NLITYSTLI 245 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~ 245 (521)
.+|...|++++|...|.++..- .+.+++ ..+|..++.+|.+.|++++|.+.+++......... ...++..++
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 3455555555555555554321 111111 23566667777777777777777776543211101 133445555
Q ss_pred HHHHh-cCChHHHHHHHHHHHhcC---CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcc------hHHH
Q 009977 246 DGLCK-NGRFREAIELFEEMVSKD---QILP-DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVF------NYTT 314 (521)
Q Consensus 246 ~~~~~-~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 314 (521)
..|.. .|++++|++.|++..+.. +.++ -..++..++..+...|++++|...|+++.......... .+..
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence 55543 477777777777664321 1111 12345666677777777777777777766543111111 1233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 009977 315 LMNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
.+..+...|+++.|...+++..+
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 34445556666666666666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=8.4e-08 Score=77.65 Aligned_cols=122 Identities=13% Similarity=0.024 Sum_probs=65.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
+..+...|++++|++.|.++. .++..+|..++.+|...|++++|++.|++.++.+ +.+...|..+..++.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhc
Confidence 334455566666655555431 1445555555666666666666666666655543 344555555555566666
Q ss_pred CHHHHHHHHHHHHHcCCCCC----------------cchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009977 289 KVDRAKKIMEFMKNNGCNPN----------------VFNYTTLMNGFCKEGKLQEAKEVFDEMKNF 338 (521)
Q Consensus 289 ~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 338 (521)
++++|.+.|++.+... +.+ ..++..+..++.+.|++++|.+.+....+.
T Consensus 85 ~~~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666665555554321 111 123344555666666666666666666553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=1.4e-07 Score=82.21 Aligned_cols=167 Identities=9% Similarity=-0.049 Sum_probs=84.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhhccC-----CcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCC----HhHHH
Q 009977 100 TILDKLARYKKFEAVDAVLRQMTYETC-----KFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPS----LKAIS 170 (521)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 170 (521)
.....|...|++++|...|.+..+... +....++..+..+|.+.|++++|++.+++.........+ ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345567777888888888877765311 111345667777777888888887777765432211111 12233
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhhhc---CCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC-----HHH
Q 009977 171 TCLNLLIE-SNQVDLAQNFLKYSNQH---LRLKPN-TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPN-----LIT 240 (521)
Q Consensus 171 ~ll~~~~~-~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~ 240 (521)
.+...|.. .|++++|...++++.+- .+.++. ..++..++..+...|++++|.+.|+++....+..+. ...
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 33344422 35666666555554321 011111 224555555555666666666666555543322110 011
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVS 266 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 266 (521)
+...+..+...|+++.|...+++..+
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22333344455555555555555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.8e-07 Score=74.45 Aligned_cols=124 Identities=8% Similarity=-0.037 Sum_probs=91.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009977 174 NLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR 253 (521)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (521)
..+...|+++.|++.|+.+ .+|+..+|..++.+|...|++++|++.|++..+.++ .+...|..++.++.+.|+
T Consensus 13 ~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp--~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh--hhhhhHHHHHHHHHhhcc
Confidence 3456677788887777654 245667777888888888888888888888888776 567788888888888888
Q ss_pred hHHHHHHHHHHHhcCCC-------------CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009977 254 FREAIELFEEMVSKDQI-------------LP-DALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 254 ~~~A~~~~~~~~~~~~~-------------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (521)
+++|++.|++.+..... .. ...++..+..++.+.|++++|.+.+....+..
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888887653110 01 13456677788888999999999888887654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.6e-07 Score=68.94 Aligned_cols=91 Identities=18% Similarity=0.115 Sum_probs=50.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
+..+.+.|++++|+..|++..+..+ .+...|..++.++...|++++|+..+++.+..+ +.+...|..+..++...|
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC--cchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHcc
Confidence 4445555555555555555555544 355555555555555555555555555555542 344555555555555555
Q ss_pred CHHHHHHHHHHHHHc
Q 009977 289 KVDRAKKIMEFMKNN 303 (521)
Q Consensus 289 ~~~~a~~~~~~~~~~ 303 (521)
++++|+..|+..++.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.79 E-value=2.8e-05 Score=66.17 Aligned_cols=223 Identities=11% Similarity=0.006 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcchH
Q 009977 237 NLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFNY 312 (521)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 312 (521)
|+..+..|+..+...+++++|+++|++..+.+ +...+..|...|.. ..++..|...+......+ +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence 34456666666667777777777777776542 44555556665554 446666666666666544 22333
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHH
Q 009977 313 TTLMNGFCK----EGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCR----AGRVDEALELLKEMKERGCKADIVTFNI 384 (521)
Q Consensus 313 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 384 (521)
..+...+.. ..+.+.|...++.....|. ......+...+.. ......+...+......+ +...+..
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 147 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 147 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhh
Confidence 333333332 3455666666666555332 2222222222222 233444555554444432 3444444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009977 385 ILGGLCR----EGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQ----KGELEKAIELLRLMLCRGFLPHYATSNELL 456 (521)
Q Consensus 385 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 456 (521)
+...|.. ..+...+..+++...+.| +......+...|.. ..++++|+..|++..+.| ++..+..|.
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 5544443 234444555555444432 23333333333332 334555555555554433 223333344
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHC
Q 009977 457 VRLCK----AGMAEDAAIALFGLVEM 478 (521)
Q Consensus 457 ~~~~~----~g~~~~a~~~~~~~~~~ 478 (521)
..|.+ ..+.++|...|++..+.
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 44432 12344455555444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.78 E-value=1.4e-05 Score=68.25 Aligned_cols=224 Identities=12% Similarity=0.004 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCHHHH
Q 009977 202 TCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK----NGRFREAIELFEEMVSKDQILPDALTY 277 (521)
Q Consensus 202 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 277 (521)
+..+..|...+.+.|++++|++.|++..+.| +...+..|...|.. ..+...|..+++.....+ +....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----~~~a~ 73 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGC 73 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----ccchh
Confidence 4455566666666777777777777666543 44455555555554 456666777776665542 23333
Q ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 009977 278 NVLIDGFCR----GGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCK----EGKLQEAKEVFDEMKNFLLKPDTIGYTT 349 (521)
Q Consensus 278 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 349 (521)
..+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+..... ..+...+..
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~ 147 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTI 147 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhh
Confidence 444443332 3456667777776666552 2222333333332 3445666666666554 235566666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCccCHHHHHHHH
Q 009977 350 LINCFCR----AGRVDEALELLKEMKERGCKADIVTFNIILGGLCR----EGKIEEALGMLEKLWYDGIYLNKASYRIVL 421 (521)
Q Consensus 350 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 421 (521)
+...|.. ..+...+...++...+.| +..+...+...|.. ..++++|..+|++..+.| ++..+..|.
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 6666654 455667777777766654 45556566655554 457888888888887765 345555666
Q ss_pred HHHHc----CCCHHHHHHHHHHHHHCCC
Q 009977 422 NFSCQ----KGELEKAIELLRLMLCRGF 445 (521)
Q Consensus 422 ~~~~~----~g~~~~a~~~~~~~~~~~~ 445 (521)
..|.+ ..+.++|.++|+++.+.|.
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 66654 3367778888888776653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=2.6e-07 Score=72.24 Aligned_cols=93 Identities=14% Similarity=0.012 Sum_probs=63.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
.+..|.+.|++++|+..|++..+..+ .+...|..++.++...|++++|+..|+++++.+ +.+..+|..++.++...
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHhhhccccch--hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHc
Confidence 34566677777777777777776665 466677777777777777777777777776653 44556677777777777
Q ss_pred CCHHHHHHHHHHHHHcC
Q 009977 288 GKVDRAKKIMEFMKNNG 304 (521)
Q Consensus 288 ~~~~~a~~~~~~~~~~~ 304 (521)
|++++|...+++..+..
T Consensus 92 g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK 108 (159)
T ss_dssp TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 77777777777776653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=7.7e-08 Score=78.91 Aligned_cols=99 Identities=9% Similarity=-0.106 Sum_probs=61.1
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHH
Q 009977 200 PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNV 279 (521)
Q Consensus 200 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 279 (521)
|+...+...+..|.+.|++++|+..|++.....| .+...|..++.+|.+.|++++|+..|+++++.+ +-+..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p--~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHH
Confidence 4444555556666666666666666666666555 456666666666666666666666666665542 334556666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 009977 280 LIDGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~ 302 (521)
+..+|...|++++|+..|+.+.+
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=2.8e-07 Score=72.08 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=83.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009977 172 CLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN 251 (521)
Q Consensus 172 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 251 (521)
....+.+.|++++|...|+++++. .+.+...|..+..+|...|++++|...|+++.+..+ .+..+|..++.++...
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p--~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc--cchHHHHHHHHHHHHc
Confidence 355677888888888888888763 345678899999999999999999999999988876 5788899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 252 GRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 252 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
|++++|+..+++..... +-+...+..+
T Consensus 92 g~~~eA~~~~~~a~~~~--p~~~~~~~~l 118 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK--PHDKDAKMKY 118 (159)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--CCCHHHHHHH
Confidence 99999999999998764 3344444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=4.5e-07 Score=66.44 Aligned_cols=104 Identities=17% Similarity=0.070 Sum_probs=82.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009977 171 TCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCK 250 (521)
Q Consensus 171 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (521)
.-...+...|++++|+..|+++++. .+.+...|..+..+|...|++++|+..+.+..+.++ .+...|..++.++..
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhcc--chhhHHHHHHHHHHH
Confidence 3456677888888888888888763 345677899999999999999999999999988877 688889999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 009977 251 NGRFREAIELFEEMVSKDQILPDALTYNVL 280 (521)
Q Consensus 251 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 280 (521)
.|++++|+..|++..+.. +-+...+..+
T Consensus 84 ~~~~~~A~~~~~~a~~~~--p~~~~~~~~l 111 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHE--ANNPQLKEGL 111 (117)
T ss_dssp TTCHHHHHHHHHHHHTTC--TTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 999999999999998763 3344444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.58 E-value=4.2e-07 Score=74.32 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHH
Q 009977 236 PNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTL 315 (521)
Q Consensus 236 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (521)
|+...+...+..+.+.|++++|+..|++++... |.+...|..+..+|.+.|++++|+..|+.+++.. +.+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence 455555566666666666666666666666553 4455666666666666666666666666666543 3345556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 009977 316 MNGFCKEGKLQEAKEVFDEMKN 337 (521)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~~~~ 337 (521)
+.+|...|++++|+..|+++.+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.54 E-value=5.4e-07 Score=65.40 Aligned_cols=88 Identities=13% Similarity=-0.037 Sum_probs=44.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGG 288 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (521)
+..+.+.|++++|...|++.....+ .+..+|..++.++.+.|++++|+..|++.++.+ |.+...+..+...|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccccc--ccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCC
Confidence 4444455555555555555555444 344555555555555555555555555554442 334445555555555555
Q ss_pred CHHHHHHHHHHH
Q 009977 289 KVDRAKKIMEFM 300 (521)
Q Consensus 289 ~~~~a~~~~~~~ 300 (521)
++++|++.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.53 E-value=4.4e-07 Score=65.90 Aligned_cols=93 Identities=10% Similarity=-0.048 Sum_probs=80.7
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHH
Q 009977 61 SHGAAISLIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHF 140 (521)
Q Consensus 61 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (521)
.+-.+...+.+.|++++|+..|++++... |.+...|..+..++.+.|++++|+..|++.++.+ |.+..++..+...|
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y 94 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 94 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHH
Confidence 44456777889999999999999987664 5578889999999999999999999999999886 66788999999999
Q ss_pred HccCcHHHHHHHHHhh
Q 009977 141 SNCSLHERVLEMFHKI 156 (521)
Q Consensus 141 ~~~g~~~~a~~~~~~~ 156 (521)
...|++++|++.|++.
T Consensus 95 ~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 95 TNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 9999999999999875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.5e-07 Score=69.23 Aligned_cols=95 Identities=17% Similarity=0.043 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 009977 383 NIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGE---LEKAIELLRLMLCRGFLPH-YATSNELLVR 458 (521)
Q Consensus 383 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~ 458 (521)
..++..+...+++++|.+.|++....++. +..++..+..++.+.++ +++|+.++++++.....|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 34566666677777777777777765443 56666666666665443 3457777777664322222 2355666777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009977 459 LCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 459 ~~~~g~~~~a~~~~~~~~~~ 478 (521)
|.+.|++++|...|+++++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77777777777777777765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=9.3e-06 Score=63.76 Aligned_cols=61 Identities=13% Similarity=-0.025 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
|+.+..+|.+.|++++|+..+++.+..+ |.+..++..++.+|...|++++|+..|+.+++.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc--ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3334444444444445544444444432 234444444444444444444444444444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.1e-06 Score=64.49 Aligned_cols=93 Identities=16% Similarity=0.058 Sum_probs=42.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCCC-HHHHHHHHHH
Q 009977 208 LIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGR---FREAIELFEEMVSKDQILPD-ALTYNVLIDG 283 (521)
Q Consensus 208 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~ 283 (521)
+++.+...+++++|.+.|++....++ .+..++..++.++.+.++ +++|+.+|+++...+ ..|+ ..++..+..+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p--~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 34444444555555555555555444 344455555555444332 233555555544331 0111 1234444555
Q ss_pred HHhCCCHHHHHHHHHHHHHc
Q 009977 284 FCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~ 303 (521)
|.+.|++++|++.|+++++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 55555555555555555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.1e-05 Score=63.26 Aligned_cols=78 Identities=14% Similarity=-0.026 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 009977 203 CIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLID 282 (521)
Q Consensus 203 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (521)
.+|+.+..+|.+.|++++|+..++......| .++.+|..++.++...|++++|+..|+++++.+ |.+......+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~ 138 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDS--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccc--cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3677888999999999999999999999887 588999999999999999999999999998874 345555555544
Q ss_pred HH
Q 009977 283 GF 284 (521)
Q Consensus 283 ~~ 284 (521)
+.
T Consensus 139 ~~ 140 (170)
T d1p5qa1 139 CQ 140 (170)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=5.9e-06 Score=61.39 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=49.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC-----HHHHHHHH
Q 009977 207 ILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPD-----ALTYNVLI 281 (521)
Q Consensus 207 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~ 281 (521)
.++..+.+.|++++|+..|++..+.++ .+..+|..+..+|.+.|++++|++.++++++.++..+. ..+|..+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345555556666666666666655554 35555555666666666666666666555443211111 12344445
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 009977 282 DGFCRGGKVDRAKKIMEFMKN 302 (521)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~ 302 (521)
..+...+++++|+..|.....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 555555555555555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.2e-07 Score=87.66 Aligned_cols=226 Identities=9% Similarity=-0.078 Sum_probs=113.0
Q ss_pred HHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHh
Q 009977 77 CALEIFNTVSEQKGFNHN-NATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHK 155 (521)
Q Consensus 77 ~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 155 (521)
+|.++|+++.... || ...+..+..++...|++++| |++++..+.. ...... +-....+ ..+..+++.++.
T Consensus 4 eA~q~~~qA~~l~---p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~-~e~~Lw~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLK---ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKK-VEQDLWN-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHH---GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHT-HHHHHHH-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHh-HHHHHHH-HHHHHHHHHHHH
Confidence 5777787775432 22 23445556666666666654 6666544311 011111 1111111 123455555655
Q ss_pred hccccCCCCCHhHHHH-H-HHHHHhcCCHHHHHHHHHHhhhcCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009977 156 IHPITREKPSLKAIST-C-LNLLIESNQVDLAQNFLKYSNQHLRLKP-NTCIFNILIKHHCKRGTLESAFEVLKEMKKSQ 232 (521)
Q Consensus 156 ~~~~~~~~~~~~~~~~-l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 232 (521)
..... ..++...... + .......+.++.++..++... +..| +...+..+...+.+.|+.++|...++......
T Consensus 75 ~~k~~-~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 150 (497)
T d1ya0a1 75 QAKNR-ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150 (497)
T ss_dssp HHSCS-SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------CCHHHHHH
T ss_pred hcccc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 43211 1222221111 1 112223445555555444332 3333 45577778888888888888887777665422
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchH
Q 009977 233 MSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNY 312 (521)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 312 (521)
...++..++..+...|++++|+..|+++.... |.+...|+.+...+...|+..+|...|.+.+... +|...++
T Consensus 151 ----~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~ 223 (497)
T d1ya0a1 151 ----CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAAS 223 (497)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHH
T ss_pred ----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHH
Confidence 23467778888888899999999999888763 5566788888888888999999998888888765 6677777
Q ss_pred HHHHHHHHhc
Q 009977 313 TTLMNGFCKE 322 (521)
Q Consensus 313 ~~l~~~~~~~ 322 (521)
..|...+.+.
T Consensus 224 ~nL~~~~~~~ 233 (497)
T d1ya0a1 224 TNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.28 E-value=0.00093 Score=57.79 Aligned_cols=134 Identities=10% Similarity=0.058 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHH
Q 009977 129 HEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNIL 208 (521)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 208 (521)
+..-...++..|.+.|.++.|..+|..+. -+..++..+.+.++++.|.+..++. -+..+|..+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~ 75 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEV 75 (336)
T ss_dssp ----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHH
Confidence 33334456666667777777777777664 3556666667777777777766644 145566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRG 287 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (521)
...+.+..+...|. +...... .+......++..|-..|.+++...+++..... ...+...++.++..|++.
T Consensus 76 ~~~l~~~~e~~la~-----i~~~~~~-~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 76 CFACVDGKEFRLAQ-----MCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHHTTCHHHHH-----HTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTT
T ss_pred HHHHHhCcHHHHHH-----HHHHHhh-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHh
Confidence 66666665554331 1111111 34444556666777777777777777766543 244555666666666664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=4.4e-07 Score=85.48 Aligned_cols=229 Identities=11% Similarity=-0.048 Sum_probs=125.8
Q ss_pred HHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHH
Q 009977 113 AVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSL-KAISTCLNLLIESNQVDLAQNFLKY 191 (521)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~ 191 (521)
+|.+.|++..+.. +.....+..+..+|...|++++| |+++... .|+. ...+. ....-...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~--e~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKV--EQDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTH--HHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhH--HHHHHHHHHHHHHHHHHH
Confidence 5778888887653 22334555666777777777766 5554311 2211 11111 011111123455666666
Q ss_pred hhhcCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 009977 192 SNQHLRLK-PNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQI 270 (521)
Q Consensus 192 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 270 (521)
..+..... ........+.......+.++.|+..+....+..+ ++...+..+...+.+.|+.++|...+.+.....
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL--PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH--
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh--hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 55432111 1111122222233345667777776666555444 567778889999999999999999888776542
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009977 271 LPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTL 350 (521)
Q Consensus 271 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 350 (521)
| ..++..++..+...|++++|...|.+..+.. +.+...|+.|+..+...|+..+|...|.+..... .|-..++..|
T Consensus 151 -~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL 226 (497)
T d1ya0a1 151 -C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL 226 (497)
T ss_dssp -H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred -H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 1 3577888999999999999999999999885 6667899999999999999999999999988743 3567888888
Q ss_pred HHHHHhcC
Q 009977 351 INCFCRAG 358 (521)
Q Consensus 351 ~~~~~~~~ 358 (521)
...+.+..
T Consensus 227 ~~~~~~~~ 234 (497)
T d1ya0a1 227 QKALSKAL 234 (497)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 88776543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=0.0012 Score=57.01 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccCCcCHHHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHH
Q 009977 93 HNNATYATILDKLARYKKFEAVDAVLRQMTYETCKFHEGIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTC 172 (521)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 172 (521)
+|..--..+++.|.+.|.++.|..+|..+.. +..++..|.+.++++.|.+.+.+.. +..+|..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~ 75 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEV 75 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHH
Confidence 5666667788888899999999999987643 3467788888999999988887652 45688888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009977 173 LNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNG 252 (521)
Q Consensus 173 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (521)
...+.+......+..+ ......++.....++..|-..|.+++...+++....... .+...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~la~i~------~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~--~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLAQMC------GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLER--AHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHHHHT------TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT--CCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHHHHH------HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCc--cchHHHHHHHHHHHHhC
Confidence 8888887776654321 112334555667788889999999999999988765433 67777888888887754
Q ss_pred ChHHHHHHHH
Q 009977 253 RFREAIELFE 262 (521)
Q Consensus 253 ~~~~A~~~~~ 262 (521)
.++-.+.+.
T Consensus 148 -~~kl~e~l~ 156 (336)
T d1b89a_ 148 -PQKMREHLE 156 (336)
T ss_dssp -HHHHHHHHH
T ss_pred -hHHHHHHHH
Confidence 334444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.23 E-value=1.3e-05 Score=61.67 Aligned_cols=98 Identities=14% Similarity=0.051 Sum_probs=57.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----ccCH-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009977 379 IVTFNIILGGLCREGKIEEALGMLEKLWYDGI----YLNK-----------ASYRIVLNFSCQKGELEKAIELLRLMLCR 443 (521)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (521)
...+..-+..+.+.|++.+|+..|.++...-. .++. .+|..+..+|.+.|++++|++.++.+++.
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~ 96 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 96 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence 34556667778888888888888888776411 1111 23344455555566666666666655542
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 444 GFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 444 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
.| +..+|..++.++...|++++|...|++.++.
T Consensus 97 --~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 97 --DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp --STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 5555555666666666666666666655554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.5e-05 Score=59.09 Aligned_cols=57 Identities=18% Similarity=0.096 Sum_probs=27.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009977 350 LINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWY 407 (521)
Q Consensus 350 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 407 (521)
+...+.+.|++++|+..|.+.++.++. +...+..+..+|.+.|++++|+..++++++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 344444455555555555554444332 344444455555555555555555544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.18 E-value=5.8e-05 Score=57.84 Aligned_cols=62 Identities=18% Similarity=-0.028 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
+|+.++.+|.+.|++++|++.++++...+| .++.+|..++.++...|++++|+..|++.++.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p--~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccc--hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555566666666666666666666666655 46666666666666666666666666666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.18 E-value=4.7e-05 Score=59.50 Aligned_cols=62 Identities=16% Similarity=0.000 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 204 IFNILIKHHCKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 204 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
+|+.+..+|.+.|++++|+..+++.....+ .+..+|..++.++...|++++|+..|++++..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhccc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555666666666666666666666554 45666666666666666666666666666654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=2.2e-05 Score=61.53 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 239 ITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
..|..+..++.+.|++++|+..++++++.+ +.+..+|..+..++...|++++|+..|+.+++.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh--hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344455555555556666666555555542 344555555555555555555555555555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=4.6e-05 Score=59.63 Aligned_cols=87 Identities=9% Similarity=-0.087 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLV 491 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (521)
....|..+..++.+.|++++|+..++++++ +.| +...|..+..++...|++++|+..|+++++.. +.+......+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~--~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhh--hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 344566777888889999999999999885 455 77888888999999999999999999988863 23445555555
Q ss_pred HHHHccCcHHH
Q 009977 492 ELICRGRKLLF 502 (521)
Q Consensus 492 ~~~~~~g~~~~ 502 (521)
.+..+.....+
T Consensus 153 ~~~~~l~~~~~ 163 (169)
T d1ihga1 153 KVKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444443333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.11 E-value=9.6e-05 Score=57.62 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 241 YSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 241 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
|+.+..+|.+.|++++|+..+++.+..+ +.+..+|..+..++...|++++|...|..+++.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555542 344555555555555555555555555555544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.98 E-value=0.00013 Score=57.32 Aligned_cols=125 Identities=16% Similarity=0.067 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCC
Q 009977 349 TLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKG 428 (521)
Q Consensus 349 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (521)
.........|++++|...|.+.+.....+ ... .....+.+...-..+... ....+..+..++...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l~---------~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGP-VLD---------DLRDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TTG---------GGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccc-ccc---------cCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 34456778899999999888887652111 000 000000111111111111 2345677888889999
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 009977 429 ELEKAIELLRLMLCRGFLP-HYATSNELLVRLCKAGMAEDAAIALFGLV-----EMGFKPESDSWAL 489 (521)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~ 489 (521)
++++|+..++++++ +.| +...|..++.+|.+.|+.++|++.|+++. +.|+.|...+-..
T Consensus 82 ~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 82 RASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp CHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred CchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 99999999999985 466 88889999999999999999999998874 3688888765443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.94 E-value=8.4e-06 Score=68.79 Aligned_cols=122 Identities=17% Similarity=0.151 Sum_probs=58.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 009977 391 REGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPH-YATSNELLVRLCKAGMAEDAA 469 (521)
Q Consensus 391 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 469 (521)
+.|++++|+..+++..+..+. |...+..+...++..|++++|...++.+.+ ..|+ ...+..+...+...+..+++.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHHHH
Confidence 456666666666666665443 555666666666666666666666666653 2442 223333333333222222221
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 470 IALFGLVEMGFKPE-SDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 470 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
.........+ +|+ ...+...+..+.+.|+.++|.+.++++.+..|.
T Consensus 85 ~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 85 QGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp TSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 1111101111 121 122233344555667777777777666665544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.89 E-value=0.0003 Score=55.14 Aligned_cols=59 Identities=8% Similarity=0.082 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEM 335 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 335 (521)
.+..++.++...|++++|+..++++++.. +.+...|..++.+|...|+..+|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34455555555566666666555555543 445555555555566666666555555554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.85 E-value=5.7e-05 Score=57.17 Aligned_cols=70 Identities=16% Similarity=0.003 Sum_probs=38.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 009977 214 KRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKN----------GRFREAIELFEEMVSKDQILPDALTYNVLIDG 283 (521)
Q Consensus 214 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (521)
+.+.+++|+..|+...+..| .+..++..++.++... +.+++|+..|+++++.+ |.+..+|..+..+
T Consensus 9 r~~~fe~A~~~~e~al~~~P--~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~--P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCC--cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--chhhHHHhhHHHH
Confidence 34456666666666666555 4555565555555432 23455666666666543 4455556666555
Q ss_pred HHhC
Q 009977 284 FCRG 287 (521)
Q Consensus 284 ~~~~ 287 (521)
|...
T Consensus 85 y~~~ 88 (145)
T d1zu2a1 85 YTSF 88 (145)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.85 E-value=1.4e-05 Score=67.47 Aligned_cols=53 Identities=28% Similarity=0.387 Sum_probs=29.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 213 CKRGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 213 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
.+.|++++|+..+++..+..| .|...+..++..++..|++++|.+.|+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P--~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344555555555555555554 45555555555555555555555555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.79 E-value=5.5e-05 Score=57.24 Aligned_cols=32 Identities=9% Similarity=-0.120 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 009977 358 GRVDEALELLKEMKERGCKADIVTFNIILGGLC 390 (521)
Q Consensus 358 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (521)
+.+++|+..|+...+..+. +..++..+..+|.
T Consensus 11 ~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~ 42 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLL 42 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHH
Confidence 3445555555555544332 4444444444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.70 E-value=0.00016 Score=55.53 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=48.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCC-
Q 009977 209 IKHHCKRGTLESAFEVLKEMKKSQMSYPN----------LITYSTLIDGLCKNGRFREAIELFEEMVSKD----QILPD- 273 (521)
Q Consensus 209 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~- 273 (521)
+..+.+.|++++|+..|++..+..+..++ ...|+.+..+|...|++++|+..+++.+... ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44455566677777666666543322121 2455666666666666666666666654321 01111
Q ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009977 274 ----ALTYNVLIDGFCRGGKVDRAKKIMEFMK 301 (521)
Q Consensus 274 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (521)
...++.+..+|...|++++|+..|++.+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1134445555555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.65 E-value=0.0002 Score=54.94 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=55.4
Q ss_pred HHHHHH--HHHHHhcCChHHHHHHHHHHHhcCCCCCC----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--
Q 009977 239 ITYSTL--IDGLCKNGRFREAIELFEEMVSKDQILPD----------ALTYNVLIDGFCRGGKVDRAKKIMEFMKNNG-- 304 (521)
Q Consensus 239 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 304 (521)
.+|..+ +..+...|++++|+..|++.++.....|+ ...|+.+..+|.+.|++++|...+++.++..
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345444 45566778888888888888764322222 3456667777777777777777666665420
Q ss_pred ---CCCC-----cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 305 ---CNPN-----VFNYTTLMNGFCKEGKLQEAKEVFDEMK 336 (521)
Q Consensus 305 ---~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 336 (521)
..++ ..+++.+..+|...|++++|+..|++..
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 1123444555555555555555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.0004 Score=47.78 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 009977 413 NKASYRIVLNFSCQKGELEKAIELLRLMLCR-----GFLP-HYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPE-SD 485 (521)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~ 485 (521)
+...+-.+...+.+.|++++|+..|+++++. ...+ ...++..+..++.+.|++++|+..++++++. .|+ ..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHH
Confidence 3444556677777888888888888877642 1111 2456777888888888888888888888776 344 34
Q ss_pred HHHHH
Q 009977 486 SWALL 490 (521)
Q Consensus 486 ~~~~l 490 (521)
++..+
T Consensus 82 a~~Nl 86 (95)
T d1tjca_ 82 ANGNL 86 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.0008 Score=46.19 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009977 276 TYNVLIDGFCRGGKVDRAKKIMEFMKNN 303 (521)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (521)
++..+..++.+.|++++|++.++++++.
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=0.056 Score=49.01 Aligned_cols=340 Identities=10% Similarity=-0.008 Sum_probs=176.1
Q ss_pred HHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHh
Q 009977 135 NLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIKHHCK 214 (521)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 214 (521)
.....+.+.++++..++.+. ..+.+...-...+.+....|+.++|...++.+=......
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~------~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~--------------- 135 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSP------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ--------------- 135 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCC------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC---------------
T ss_pred HHHHHHHhccCHHHHHHhcc------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---------------
Confidence 34455566666665444331 123344444455666666777766666555443221111
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009977 215 RGTLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGFCRGGKVDRAK 294 (521)
Q Consensus 215 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (521)
.+.+..+|..+...|. .+...+-.-+......|++..|..+...+... ........+..... ...+.
T Consensus 136 ---p~~c~~l~~~~~~~~~--lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~-----~~~~~~a~~~l~~~---p~~~~ 202 (450)
T d1qsaa1 136 ---PNACDKLFSVWRASGK--QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD-----YQTIASAIISLANN---PNTVL 202 (450)
T ss_dssp ---CTHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG-----GHHHHHHHHHHHHC---GGGHH
T ss_pred ---chHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh-----HHHHHHHHHHHHhC---hHhHH
Confidence 2233334444444443 34444445555666777877777776544211 12222333322221 12222
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHH
Q 009977 295 KIMEFMKNNGCNPNVFNYTTLMNGFCK--EGKLQEAKEVFDEMKNFLLKPDTIGYTTLIN----CFCRAGRVDEALELLK 368 (521)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~ 368 (521)
... ... ..+......+..++.+ ..+.+.|..++......... +...+..+-. .+...+..+.+...+.
T Consensus 203 ~~~---~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~ 276 (450)
T d1qsaa1 203 TFA---RTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRD 276 (450)
T ss_dssp HHH---HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred HHH---hcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 111 111 1222222222222222 24666777777665543222 2222222222 2223455666666666
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----
Q 009977 369 EMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCR----- 443 (521)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 443 (521)
.....+. +.......+......+++..+...+..+... ..-...-.--+..++...|+.++|...|..+...
T Consensus 277 ~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG 353 (450)
T d1qsaa1 277 DAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYP 353 (450)
T ss_dssp HHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHH
T ss_pred hhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHH
Confidence 6555432 3333333444455667777777777766432 2223334445666777778887777777775531
Q ss_pred -------CCCC----------CHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHH
Q 009977 444 -------GFLP----------HYAT-----SNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLL 501 (521)
Q Consensus 444 -------~~~p----------~~~~-----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 501 (521)
|.++ .... -..-+..+...|...+|...+..+... .+......++....+.|.++
T Consensus 354 ~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~ 430 (450)
T d1qsaa1 354 MVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWD 430 (450)
T ss_dssp HHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChh
Confidence 1111 0000 112345677889999999999888753 35666777888888999999
Q ss_pred HHHHHHHHHHHcCccCccC
Q 009977 502 FAFELLDELVIKESGTIQV 520 (521)
Q Consensus 502 ~A~~~~~~m~~~~~~~~~v 520 (521)
.|+....+....+.-+++=
T Consensus 431 ~aI~a~~~~~~~d~~~lRF 449 (450)
T d1qsaa1 431 LSVQATIAGKLWDHLEERF 449 (450)
T ss_dssp HHHHHHHHTTCTTCHHHHS
T ss_pred HHHHHHHHHHccCchhhcC
Confidence 9999888776555444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.83 E-value=0.036 Score=40.27 Aligned_cols=14 Identities=7% Similarity=0.012 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHc
Q 009977 360 VDEALELLKEMKER 373 (521)
Q Consensus 360 ~~~A~~~~~~~~~~ 373 (521)
.++|+++|++..+.
T Consensus 75 ~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 75 LRKAAQYYSKACGL 88 (133)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hHHHHHHHhhhhcc
Confidence 34444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.65 E-value=0.044 Score=39.82 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHHHcC
Q 009977 359 RVDEALELLKEMKERG 374 (521)
Q Consensus 359 ~~~~A~~~~~~~~~~~ 374 (521)
|+++|+..|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4556666666655554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.40 E-value=0.012 Score=41.50 Aligned_cols=47 Identities=15% Similarity=0.005 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 431 EKAIELLRLMLCRGFLPH-YATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 431 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
++|+.+++++.+.+ +.+ ...+..|.-+|.+.|++++|.+.++.+++.
T Consensus 55 ~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 55 RLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34455555444321 111 133334444455555555555555554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.72 E-value=0.18 Score=35.03 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=65.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHH
Q 009977 355 CRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAI 434 (521)
Q Consensus 355 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (521)
.-.|..++..+++.+..... +..-||.++--....-+-+...++++.+-.. .| ...+++.....
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHH
Confidence 34566666666666665542 4444555555554444555555555444321 11 01223333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcC
Q 009977 435 ELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKE 514 (521)
Q Consensus 435 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 514 (521)
..+-.+ ..+...++..++.+..+|+-++-.++++.+.+.+ +++++....++.+|.+-|...++-+++.++-+++
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 322221 1122333334455555555555555555544433 4555555555555556666656655555555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.24 E-value=0.28 Score=34.10 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=69.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 009977 319 FCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEALELLKEMKERGCKADIVTFNIILGGLCREGKIEEA 398 (521)
Q Consensus 319 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 398 (521)
+...|..++..+++.+.... .+..-||-++.-....-+-+.....++.+-.. .|.. ..++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls----------~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCch----------hhhcHHHH
Confidence 34456677777777666552 23444555555544444555544444443321 1111 11222222
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009977 399 LGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLVEM 478 (521)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 478 (521)
...+-.+ ..+...+...++.....|.-++-.++++.+.+. -.|++..+..+..+|.+.|...++-.++.++-+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 2222111 113344455555566666666666666665543 3556666666666666666666666666666555
Q ss_pred CC
Q 009977 479 GF 480 (521)
Q Consensus 479 ~~ 480 (521)
|+
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 53
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.19 Score=35.19 Aligned_cols=66 Identities=14% Similarity=0.015 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009977 201 NTCIFNILIKHHCKRG---TLESAFEVLKEMKKSQMSYPNLITYSTLIDGLCKNGRFREAIELFEEMVSK 267 (521)
Q Consensus 201 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 267 (521)
.+.+-...+-++.+.. ++++++.+|+++.+.++. .....+-.+.-+|.+.|++++|.+.++.+++.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~-~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3334444444444332 234555555555544331 11234444555555555555555555555544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.78 E-value=1.3 Score=39.50 Aligned_cols=331 Identities=11% Similarity=-0.019 Sum_probs=172.2
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHhhhccC-----------------CcCH
Q 009977 68 LIKCEKEPQCALEIFNTVSEQKGFNHNNATYATILDKLARYKKFEAVDAVLRQMTYETC-----------------KFHE 130 (521)
Q Consensus 68 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~ 130 (521)
.+.+.++++..+.++ ...+.+...-...+.+....|+..+|...+..+-..|. ..+.
T Consensus 81 ~L~~~~~w~~~~~~~------~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~ 154 (450)
T d1qsaa1 81 ELARREDWRGLLAFS------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP 154 (450)
T ss_dssp HHHHTTCHHHHHHHC------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHhccCHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCH
Confidence 445555655533332 12234555545566666777777776666655543331 2233
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhccccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcHHHHHHHHH
Q 009977 131 GIFLNLMKHFSNCSLHERVLEMFHKIHPITREKPSLKAISTCLNLLIESNQVDLAQNFLKYSNQHLRLKPNTCIFNILIK 210 (521)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (521)
..+..-+......|++..|..+...+.. .........+.+......+ ...... ..++......+..
T Consensus 155 ~~~~~R~~~~l~~~~~~~a~~l~~~l~~-----~~~~~~~a~~~l~~~p~~~---~~~~~~------~~~~~~~~~~~~~ 220 (450)
T d1qsaa1 155 LAYLERIRLAMKAGNTGLVTVLAGQMPA-----DYQTIASAIISLANNPNTV---LTFART------TGATDFTRQMAAV 220 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCG-----GGHHHHHHHHHHHHCGGGH---HHHHHH------SCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhhHHHHHhhCCh-----hHHHHHHHHHHHHhChHhH---HHHHhc------CCCChhhhHHHHH
Confidence 3333334444445566666665554421 1112222333332222222 221111 1122222222222
Q ss_pred HHHh--cCChHHHHHHHHHHHhCCCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009977 211 HHCK--RGTLESAFEVLKEMKKSQMSYPNLITYSTLI----DGLCKNGRFREAIELFEEMVSKDQILPDALTYNVLIDGF 284 (521)
Q Consensus 211 ~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (521)
.+.+ ..+.+.|..++......... +...+..+- ..+...+..+.+..++...... ..+.......+...
T Consensus 221 ~l~rla~~d~~~a~~~l~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~a 295 (450)
T d1qsaa1 221 AFASVARQDAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMA 295 (450)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHhhhhcccc--cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHH
Confidence 2222 35677788888777655432 222222222 2223356667777777766544 23444444455556
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009977 285 CRGGKVDRAKKIMEFMKNNGCNPNVFNYTTLMNGFCKEGKLQEAKEVFDEMKNFLLKPDTIGYTTLINCFCRAGRVDEAL 364 (521)
Q Consensus 285 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 364 (521)
...+++..+...+..+.... ........-+..++...|+.+.|...|..+.. .++ -|..|... +.|..-.
T Consensus 296 l~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~-- 365 (450)
T d1qsaa1 296 LGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQ--RIGEEYE-- 365 (450)
T ss_dssp HHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHH--HTTCCCC--
T ss_pred HHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHH--HcCCCCC--
Confidence 66788888888887765321 22334446678888888898888888888764 233 33333222 1221100
Q ss_pred HHHHHHHHcCCC--Cc----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 009977 365 ELLKEMKERGCK--AD----IVTFNIILGGLCREGKIEEALGMLEKLWYDGIYLNKASYRIVLNFSCQKGELEKAIELLR 438 (521)
Q Consensus 365 ~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (521)
+....+. +. ...-...+..+...|+...|...+..+... .+......+.....+.|.++.|+....
T Consensus 366 -----~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~ 437 (450)
T d1qsaa1 366 -----LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (450)
T ss_dssp -----CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 0000000 00 001123356677889999999999888754 255566677788889999999998776
Q ss_pred HHH
Q 009977 439 LML 441 (521)
Q Consensus 439 ~~~ 441 (521)
...
T Consensus 438 ~~~ 440 (450)
T d1qsaa1 438 AGK 440 (450)
T ss_dssp HTT
T ss_pred HHH
Confidence 653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.33 E-value=1.9 Score=28.23 Aligned_cols=47 Identities=9% Similarity=-0.072 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009977 430 LEKAIELLRLMLCRGFLPHYATSNELLVRLCKAGMAEDAAIALFGLV 476 (521)
Q Consensus 430 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 476 (521)
.=+..+-++.+....+.|++.+..+.+++|.+..++..|.++++-..
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444555544555566665556666666666666666555544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.86 E-value=1.7 Score=28.42 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCcc
Q 009977 464 MAEDAAIALFGLVEMGFKPESDSWALLVELICRGRKLLFAFELLDELVIKESG 516 (521)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 516 (521)
+.-+..+-+..+...++-|++....+.+++|.|.+++.-|.++|+-+..+-+.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~ 73 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP 73 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 55577888888888889999999999999999999999999999999887643
|
| >d2r9ga1 a.80.1.2 (A:238-423) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: MgsA/YrvN C-terminal domain-like domain: Uncharacterized protein EfaeDRAFT 0938 species: Enterococcus faecium [TaxId: 1352]
Probab=84.94 E-value=5.7 Score=29.66 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=13.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCC
Q 009977 425 CQKGELEKAIELLRLMLCRGFLPH 448 (521)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~~~p~ 448 (521)
.+.++.+.|+-.+.+|++.| +|.
T Consensus 14 iRgSD~daAly~larml~~G-d~~ 36 (186)
T d2r9ga1 14 IRGSDVDAALHYLARLVEAG-DLA 36 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHH
T ss_pred HhcCCHhHHHHHHHHHHHcC-Cch
Confidence 34566666666666666655 553
|