Citrus Sinensis ID: 010004

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
Protein Sequence
MEISEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFDESTATNLLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGPDSNQSQC
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEHHHcccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEccccEEEEEEcccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHEEHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcHHHHcccccHHHHHHcccccHHHHHHHHHcHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MEISEFAKNITQEHTQVVPISLFVAILCLCLIVGHlleenrwvNESITAILIGCVSGIIILSITkwksshilrfdeelffiyllppiifnagfqvkKKQFFHNFLTIMMFGVIGVFISVSIITVgswwlfpklgfmglsiQDYLALGTIFSSTDTVCTLQilnqdetpllYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYawhnmtdssrittRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLsnymnshrspsisfnHQVVIWWAGLMRGAVSIALAFKQftysgvtsdpdsatMITATIIIVLFTTLVFGfltrplvkyllphpqhatnnscrepkspnedmnlpllsfdestATNLLRAKDSlsmlldrpvytihsfwrrfddtymrpvfggpdsnqsqc
Flexible Loop (DISEMBL)
MEISEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFDESTATNLLRAkdslsmlldrpVYTIHSFWRRFDDTYMRPvfggpdsnqsqc
Low Complexity Region (SEG)
MEISEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMfgvigvfisvsiitvgsWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFDESTATNLLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGPDSNQSQC
Disordered region (IsUnstruct)
*********ITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLP*********************************NLLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVF**********
Disordered Region (DISOPRED)
************EHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLL************************************************RPVYTIHSFWRRFDDTYMR*************
Disordered Region (DISEMBL)
MEISEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFDESTATNLLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGG********
Disordered Region (DISPRO)
********NITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPHP************SPNEDMNLPLLSFDESTATNLLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGP*******
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEISEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFDESTATNLLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGPDSNQSQC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	520	2.2.26 [Sep-21-2011]
Q8S397	529	Sodium/hydrogen exchanger	yes	no	0.996	0.979	0.729	0.0
Q56XP4	546	Sodium/hydrogen exchanger	no	no	0.965	0.919	0.605	1e-178
Q68KI4	538	Sodium/hydrogen exchanger	no	no	0.976	0.944	0.604	1e-176
Q84WG1	503	Sodium/hydrogen exchanger	no	no	0.875	0.904	0.628	1e-158
Q4L208	575	Sodium/hydrogen exchanger	yes	no	0.817	0.739	0.334	5e-57
Q8R4D1	576	Sodium/hydrogen exchanger	yes	no	0.817	0.737	0.331	7e-57
Q5ZJ75	574	Sodium/hydrogen exchanger	yes	no	0.780	0.707	0.343	7e-57
Q9Y2E8	581	Sodium/hydrogen exchanger	yes	no	0.894	0.800	0.314	1e-55
Q552S0	674	Sodium/hydrogen exchanger	yes	no	0.794	0.612	0.334	1e-55
Q04121	633	Endosomal/prevacuolar sod	yes	no	0.663	0.545	0.340	2e-50

>sp|Q8S397|NHX4_ARATH Sodium/hydrogen exchanger 4 OS=Arabidopsis thaliana GN=NHX4 PE=2 SV=2

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/525 (72%), Positives = 444/525 (84%), Gaps = 7/525 (1%)

Query: 3   ISEFAKN-ITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIIL 61
           ++EF  N +  EH QV+PIS+F+AILCLCL++GHLLEENRWVNESITAIL+G  SG +IL
Sbjct: 5   LTEFVTNKLAAEHPQVIPISVFIAILCLCLVIGHLLEENRWVNESITAILVGAASGTVIL 64

Query: 62  SITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI 121
            I+K KSSHIL FDEELFFIYLLPPIIFNAGFQVKKK+FFHNFLTIM FGVIGVFIS  I
Sbjct: 65  LISKGKSSHILVFDEELFFIYLLPPIIFNAGFQVKKKKFFHNFLTIMSFGVIGVFISTVI 124

Query: 122 ITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVN 181
           I+ G+WWLFPKLGF GLS +DYLA+GTIFSSTDTVCTLQIL+QDETPLLYSLVFGEGVVN
Sbjct: 125 ISFGTWWLFPKLGFKGLSARDYLAIGTIFSSTDTVCTLQILHQDETPLLYSLVFGEGVVN 184

Query: 182 DATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGK 241
           DATSVVLFNAVQKI    L G  AL++F +FLYLFSTST+LG+  GL+T+ VLKTLYFG+
Sbjct: 185 DATSVVLFNAVQKIQFESLTGWTALQVFGNFLYLFSTSTLLGIGVGLITSFVLKTLYFGR 244

Query: 242 HSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFA 301
           HS+ RE+A+MVLMAYLSY+LAEL  LSGILTVFFCG+ MSHYA +N+T+SSRIT+RH FA
Sbjct: 245 HSTTRELAIMVLMAYLSYMLAELFSLSGILTVFFCGVLMSHYASYNVTESSRITSRHVFA 304

Query: 302 MMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLS 361
           M+SFIAETFIFLYVG DA D  KW+ S LSF  +LGV   +  ++LLGRAAFVFPLS+L+
Sbjct: 305 MLSFIAETFIFLYVGTDALDFTKWKTSSLSFGGTLGVSGVITALVLLGRAAFVFPLSVLT 364

Query: 362 NYMNSH--RSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATII 419
           N+MN H  R+ SI+F HQV+IWWAGLMRGAVSIALAFKQFTYSGVT DP +A M+T T I
Sbjct: 365 NFMNRHTERNESITFKHQVIIWWAGLMRGAVSIALAFKQFTYSGVTLDPVNAAMVTNTTI 424

Query: 420 IVLFTTLVFGFLTRPLVKYLLPH-PQHATNNSCR--EPKSPNEDMNLPLLSFDESTATNL 476
           +VLFTTLVFGFLT+PLV YLLP    H T N  +  EP SP ED  LPLLSFDES +TN 
Sbjct: 425 VVLFTTLVFGFLTKPLVNYLLPQDASHNTGNRGKRTEPGSPKEDATLPLLSFDESASTNF 484

Query: 477 LRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGP-DSNQSQC 520
            RAKDS+S+L+++PVYTIH +WR+FDDTYMRP+FGGP   NQ +C
Sbjct: 485 NRAKDSISLLMEQPVYTIHRYWRKFDDTYMRPIFGGPRRENQPEC 529

May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q56XP4|NHX2_ARATH Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2

 Score =  625 bits (1612), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 308/509 (60%), Positives = 388/509 (76%), Gaps = 7/509 (1%)

Query: 11  TQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSH 70
           T +H  VV ++LFVA+LC C+++GHLLEENRW+NESITA+LIG  +G++IL I++ K+SH
Sbjct: 16  TSDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTGVVILLISRGKNSH 75

Query: 71  ILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLF 130
           +L F E+LFFIYLLPPIIFNAGFQVKKKQFF NF+TIM FG IG  +S +II++G+   F
Sbjct: 76  LLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMAFGAIGTVVSCTIISLGAIQFF 135

Query: 131 PKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFN 190
            KL      + D+LA+G IF++TD+VCTLQ+LNQDETPLLYSLVFGEGVVNDATSVVLFN
Sbjct: 136 KKLDIGTFDLGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFN 195

Query: 191 AVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIAL 250
           A+Q  D+  LN +AA +   +F YLF  ST LGV  GL++A V+K LYFG+HS+ RE+AL
Sbjct: 196 AIQSFDLTHLNHEAAFQFLGNFFYLFLLSTGLGVATGLISAYVIKKLYFGRHSTDREVAL 255

Query: 251 MVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETF 310
           M+LMAYLSY+LAEL  LSGILTVFFCGI MSHY WHN+T+SSRITT+H FA +SF+AETF
Sbjct: 256 MMLMAYLSYMLAELFALSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATLSFLAETF 315

Query: 311 IFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSP 370
           IFLYVGMDA DIEKWR    S  TS+ V S L+ +++LGRAAFVFPLS LSN    H+S 
Sbjct: 316 IFLYVGMDALDIEKWRFVSDSPGTSVAVSSILMGLVMLGRAAFVFPLSFLSNLAKKHQSE 375

Query: 371 SISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGF 430
            IS   QVVIWWAGLMRGAVS+ALA+ +FT SG T    +A MIT+TI + LF+T+VFG 
Sbjct: 376 KISIKQQVVIWWAGLMRGAVSMALAYNKFTRSGHTELRGNAIMITSTITVCLFSTMVFGM 435

Query: 431 LTRPLVKYLLPHPQHATN-NSCREPKSPNEDMNLPLL------SFDESTATNLLRAKDSL 483
           LT+PL++YL+PH +  T+  S     S  + +++PLL      SF+   +   +   +SL
Sbjct: 436 LTKPLIRYLMPHQKATTSTTSMLSDDSTPKSIHIPLLDGEQLDSFELPGSHQDVPRPNSL 495

Query: 484 SMLLDRPVYTIHSFWRRFDDTYMRPVFGG 512
              L RP  T+H +WR+FDD +MRPVFGG
Sbjct: 496 RGFLMRPTRTVHYYWRQFDDAFMRPVFGG 524

Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification.

Arabidopsis thaliana (taxid: 3702)

>sp|Q68KI4|NHX1_ARATH Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2

 Score =  618 bits (1594), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 310/513 (60%), Positives = 399/513 (77%), Gaps = 5/513 (0%)

Query: 3   ISEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILS 62
           +S+     T +H  VV ++LFVA+LC C+++GHLLEENRW+NESITA+LIG  +G+ IL 
Sbjct: 6   VSKLPSLSTSDHASVVALNLFVALLCACIVLGHLLEENRWMNESITALLIGLGTGVTILL 65

Query: 63  ITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSII 122
           I+K KSSH+L F E+LFFIYLLPPIIFNAGFQVKKKQFF NF+TIM+FG +G  IS +II
Sbjct: 66  ISKGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMLFGAVGTIISCTII 125

Query: 123 TVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVND 182
           ++G    F KL      + DYLA+G IF++TD+VCTLQ+LNQDETPLLYSLVFGEGVVND
Sbjct: 126 SLGVTQFFKKLDIGTFDLGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVND 185

Query: 183 ATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKH 242
           ATSVV+FNA+Q  D+  LN +AA  +  +FLYLF  ST+LG   GL++A V+K LYFG+H
Sbjct: 186 ATSVVVFNAIQSFDLTHLNHEAAFHLLGNFLYLFLLSTLLGAATGLISAYVIKKLYFGRH 245

Query: 243 SSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAM 302
           S+ RE+ALM+LMAYLSY+LAEL +LSGILTVFFCGI MSHY WHN+T+SSRITT+HTFA 
Sbjct: 246 STDREVALMMLMAYLSYMLAELFDLSGILTVFFCGIVMSHYTWHNVTESSRITTKHTFAT 305

Query: 303 MSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSN 362
           +SF+AETFIFLYVGMDA DI+KWR    +  TS+ V S L+ ++++GRAAFVFPLS LSN
Sbjct: 306 LSFLAETFIFLYVGMDALDIDKWRSVSDTPGTSIAVSSILMGLVMVGRAAFVFPLSFLSN 365

Query: 363 YMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVL 422
               ++S  I+FN QVVIWW+GLMRGAVS+ALA+ +FT +G T    +A MIT+TI + L
Sbjct: 366 LAKKNQSEKINFNMQVVIWWSGLMRGAVSMALAYNKFTRAGHTDVRGNAIMITSTITVCL 425

Query: 423 FTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLL---SFDESTATNLLRA 479
           F+T+VFG LT+PL+ YLLPH Q+AT +   +  +P + +++PLL   SF E +  + +  
Sbjct: 426 FSTVVFGMLTKPLISYLLPH-QNATTSMLSDDNTP-KSIHIPLLDQDSFIEPSGNHNVPR 483

Query: 480 KDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGG 512
            DS+   L RP  T+H +WR+FDD++MRPVFGG
Sbjct: 484 PDSIRGFLTRPTRTVHYYWRQFDDSFMRPVFGG 516

Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. Can also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification. Required during leaves expansion, probably to stimulate epidermal cell expansion. Confers competence to grow in high salinity conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG1|NHX3_ARATH Sodium/hydrogen exchanger 3 OS=Arabidopsis thaliana GN=NHX3 PE=2 SV=2

 Score =  559 bits (1441), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/458 (62%), Positives = 352/458 (76%), Gaps = 3/458 (0%)

Query: 13  EHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHIL 72
           +H  VV ++LFVA+LC C+++GHLLEE RW+NESITA++IG  +GI+IL I+  KSS IL
Sbjct: 19  DHASVVSMNLFVALLCACIVLGHLLEETRWMNESITALIIGSCTGIVILLISGGKSSRIL 78

Query: 73  RFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPK 132
            F E+LFFIYLLPPIIFNAGFQVKKKQFF NF+TIM+FG IG  IS  II+ G+  LF K
Sbjct: 79  VFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFVIISFGAKHLFEK 138

Query: 133 LGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAV 192
           +    L+I DYLA+G IFS+TD+VCTLQ+LNQDETPLLYSLVFGEGVVNDATSVVLFNA+
Sbjct: 139 MNIGDLTIADYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAI 198

Query: 193 QKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMV 252
           Q+ D+  +N   AL    +F YLF  ST LGV AGLL+A V+K LY G+HS+ RE+ALM+
Sbjct: 199 QRFDLTNINSAIALEFAGNFFYLFILSTALGVAAGLLSAFVIKKLYIGRHSTDREVALMM 258

Query: 253 LMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIF 312
           L+AYLSY+LAEL  LS ILTVFFCGI MSHY WHN+TD S++TT+HTFA MSF+AE FIF
Sbjct: 259 LLAYLSYMLAELFHLSSILTVFFCGIVMSHYTWHNVTDKSKVTTKHTFAAMSFLAEIFIF 318

Query: 313 LYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSI 372
           LYVGMDA DIEKW + + S   S+GV S L+ +ILLGRAAFVFPLS LSN   S     I
Sbjct: 319 LYVGMDALDIEKWDVVRNSPGQSIGVSSILLGLILLGRAAFVFPLSFLSNLTKSSPDEKI 378

Query: 373 SFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLT 432
               QV IWWAGLMRGAVS+ALA+ QFT SG T    +A MIT+TI +VLF+T+VFG LT
Sbjct: 379 DLKKQVTIWWAGLMRGAVSMALAYNQFTTSGHTKVLGNAIMITSTITVVLFSTVVFGLLT 438

Query: 433 RPLVKYLLPHPQHATNNSCR-EPKSPNED--MNLPLLS 467
           +PLVK+L P  + ++  + +   +S   D  ++ PLLS
Sbjct: 439 KPLVKHLQPSSKQSSTTALQITLRSSFHDPILHEPLLS 476

May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4L208|SL9A8_RAT Sodium/hydrogen exchanger 8 OS=Rattus norvegicus GN=Slc9a8 PE=2 SV=1

 Score =  222 bits (566), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 156/467 (33%), Positives = 249/467 (53%), Gaps = 42/467 (8%)

Query: 12  QEHTQVVPISLFVAILCL--CLIVGHLLEENR--WVNESITAILIGCVSGIIILSI---- 63
           Q+  Q   +++F ++L L  C+I+ HLL   R  ++ ES+  + +G + G +I  I    
Sbjct: 46  QQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFKK 105

Query: 64  -TKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSII 122
              WK   + R    +FF+ LLPPIIF +G+ + K  FF N  +I +F V G  IS  ++
Sbjct: 106 LANWKEEEMFR--PNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVV 163

Query: 123 TVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDET-PLLYSLVFGEGVVN 181
             G ++L        L++ D  A G++ S+ D V T+ I N     P+L  LVFGE ++N
Sbjct: 164 GGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILN 223

Query: 182 DATSVVLFNAVQKIDVRELNGKAALRIFRD----FLYLFSTSTILGVTAGLLTALVLKTL 237
           DA S+VL N  + +  + ++  +  + F      FL +F  S  LG   GL++ALVLK +
Sbjct: 224 DAVSIVLTNTAEGLTRKHMSDVSGWQTFSQALGYFLKMFFGSAALGTLTGLISALVLKHI 283

Query: 238 YFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTR 297
              K  S+ E  +M++ AYL Y LAE + LSGI+ + F GI MSHY  HN++  ++I  +
Sbjct: 284 DLRKTPSL-EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQ 342

Query: 298 HTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPL 357
            T   ++F+ ET +F ++G+  F        ++SFV         I+++L GRA  +FPL
Sbjct: 343 QTLRTVAFLCETCVFAFLGLSIFSFP--HKFEISFVI------WCIVLVLFGRAVNIFPL 394

Query: 358 SLLSNYMNSHR-SPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITA 416
           S L N+   H+ +P + F    ++W++GL RGA+  AL+     + G+        + T 
Sbjct: 395 SYLLNFFRDHKITPKMMF----IMWFSGL-RGAIPYALSL----HLGLEPMEKRQLIGTT 445

Query: 417 TIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNL 463
           TIIIVLFT L+ G  T PL++ +            R  +   +D+NL
Sbjct: 446 TIIIVLFTILLLGGSTMPLIRLV-------DIEDARARRRSKKDVNL 485

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Rattus norvegicus (taxid: 10116)

>sp|Q8R4D1|SL9A8_MOUSE Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc9a8 PE=2 SV=1

 Score =  222 bits (565), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 155/467 (33%), Positives = 249/467 (53%), Gaps = 42/467 (8%)

Query: 12  QEHTQVVPISLFVAILCL--CLIVGHLLEENR--WVNESITAILIGCVSGIIILSI---- 63
           Q+  Q   +++F ++L L  C+I+ HLL   R  ++ ES+  + +G + G +I  I    
Sbjct: 47  QQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFKK 106

Query: 64  -TKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSII 122
              WK   + R    +FF+ LLPPIIF +G+ + K  FF N  +I +F V G  IS  ++
Sbjct: 107 LANWKEEEMFR--PNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVV 164

Query: 123 TVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDET-PLLYSLVFGEGVVN 181
             G ++L        L++ D  A G++ S+ D V T+ I N     P+L  LVFGE ++N
Sbjct: 165 GGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILN 224

Query: 182 DATSVVLFNAVQKIDVRELNGKAALRIFRD----FLYLFSTSTILGVTAGLLTALVLKTL 237
           DA S+VL N  + +  + ++  +  + F      FL +F  S  LG   GL++ALVLK +
Sbjct: 225 DAVSIVLTNTAEGLTRKHMSDVSGWQTFSQALGYFLKMFFGSAALGTLTGLISALVLKHI 284

Query: 238 YFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTR 297
              K  S+ E  +M++ AYL Y LAE + LSGI+ + F GI MSHY  HN++  ++I  +
Sbjct: 285 DLRKTPSL-EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQ 343

Query: 298 HTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPL 357
            T   ++F+ ET +F ++G+  F        ++SFV         I+++L GRA  +FPL
Sbjct: 344 QTLRTVAFLCETCVFAFLGLSIFSFP--HKFEISFVI------WCIVLVLFGRAVNIFPL 395

Query: 358 SLLSNYMNSHR-SPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITA 416
           S L N+   H+ +P + F    ++W++GL RGA+  AL+     + G+        + T 
Sbjct: 396 SYLLNFFRDHKITPKMMF----IMWFSGL-RGAIPYALSL----HLGLEPMEKRQLIGTT 446

Query: 417 TIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNL 463
           TI+IVLFT L+ G  T PL++ +            R  +   +D+NL
Sbjct: 447 TIVIVLFTILLLGGSTMPLIRLV-------DIEDARARRRSKKDVNL 486

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Mus musculus (taxid: 10090)

>sp|Q5ZJ75|SL9A8_CHICK Sodium/hydrogen exchanger 8 OS=Gallus gallus PE=2 SV=1

 Score =  222 bits (565), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 242/443 (54%), Gaps = 37/443 (8%)

Query: 11  TQEHTQVVPISLFVAILCL--CLIVGHLLEENR--WVNESITAILIGCVSGIII-----L 61
            Q+  Q   +++F ++L L  C+I+ HLL + R  ++ ES+  + +G + G  I      
Sbjct: 44  AQQEEQSSGMTIFFSLLVLAICIILVHLLIKYRLHFLPESVAVVSLGIIMGAFIKIIEAQ 103

Query: 62  SITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI 121
            +  WK   + R    +FF+ LLPPIIF +G+ + K  FF N  +I +F V G  IS  I
Sbjct: 104 KLANWKEEEMFR--PNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFSVFGTAISAFI 161

Query: 122 ITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQ-DETPLLYSLVFGEGVV 180
           +  G ++L        L++ D  A G++ S+ D V T+ I N  +  P+L  LVFGE ++
Sbjct: 162 VGGGIYFLGQADVIYKLNMTDSFAFGSLISAVDPVATIAIFNALNVDPVLNMLVFGESIL 221

Query: 181 NDATSVVLFNAVQKIDVRELNGKAALRIFRD----FLYLFSTSTILGVTAGLLTALVLKT 236
           NDA S+VL N  + +    ++  +  + F      FL +F  S  LG   GL++ALVLK 
Sbjct: 222 NDAVSIVLTNTAEGLTRENMSDVSGWQTFLQALGYFLKMFFGSAALGTLTGLISALVLKH 281

Query: 237 LYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITT 296
           +   K  S+ E  +M++ AYL Y LAE + LSGI+ + F GI MSHY  HN++  ++I  
Sbjct: 282 IDLRKTPSL-EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILM 340

Query: 297 RHTFAMMSFIAETFIFLYVGMDAFDI-EKWRMSKLSFVTSLGVYSALILMILLGRAAFVF 355
           + T   ++F+ ET +F ++G+  F    K+ MS + +          I+++L GRA  +F
Sbjct: 341 QQTLRTVAFMCETCVFAFLGLSIFSFPHKFEMSFVIWC---------IVLVLFGRAVNIF 391

Query: 356 PLSLLSNYMNSHR-SPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMI 414
           PLS L N+   H+ +P + F    ++W++GL RGA+  AL+     + G+        + 
Sbjct: 392 PLSYLLNFFRDHKITPKMMF----IMWFSGL-RGAIPYALSL----HLGLEPIEKRQLIG 442

Query: 415 TATIIIVLFTTLVFGFLTRPLVK 437
           T TIIIVLFT L+ G  T PL++
Sbjct: 443 TTTIIIVLFTVLLLGGGTMPLIR 465

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Gallus gallus (taxid: 9031)

>sp|Q9Y2E8|SL9A8_HUMAN Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4

 Score =  218 bits (555), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 165/524 (31%), Positives = 266/524 (50%), Gaps = 59/524 (11%)

Query: 11  TQEHTQVVPISLFVAILCL--CLIVGHLLEENR--WVNESITAILIGCVSGIIIL----- 61
            Q+  Q   +++F ++L L  C+I+ HLL   R  ++ ES+  + +G + G +I      
Sbjct: 51  AQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKIIEFK 110

Query: 62  SITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI 121
            +  WK   + R    +FF+ LLPPIIF +G+ + K  FF N  +I +F V G  IS  +
Sbjct: 111 KLANWKEEEMFR--PNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFV 168

Query: 122 ITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDET-PLLYSLVFGEGVV 180
           +  G ++L        L++ D  A G++ S+ D V T+ I N     P+L  LVFGE ++
Sbjct: 169 VGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESIL 228

Query: 181 NDATSVVLFNAVQKIDVRELNGKAALRIFRD----FLYLFSTSTILGVTAGLLTALVLKT 236
           NDA S+VL N  + +  + ++  +  + F      FL +F  S  LG   GL++ALVLK 
Sbjct: 229 NDAVSIVLTNTAEGLTRKNMSDVSGWQTFLQALDYFLKMFFGSAALGTLTGLISALVLKH 288

Query: 237 LYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITT 296
           +   K  S+ E  +M++ AYL Y LAE + LSGI+ + F GI MSHY  HN++  ++I  
Sbjct: 289 IDLRKTPSL-EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILM 347

Query: 297 RHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFP 356
           + T   ++F+ ET +F ++G+  F        ++SFV         I+++L GRA  +FP
Sbjct: 348 QQTLRTVAFLCETCVFAFLGLSIFSFP--HKFEISFVI------WCIVLVLFGRAVNIFP 399

Query: 357 LSLLSNYMNSHR-SPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMI- 414
           LS L N+   H+ +P + F    ++W++GL RGA+  AL+        +  +P     + 
Sbjct: 400 LSYLLNFFRDHKITPKMMF----IMWFSGL-RGAIPYALSLH------LDLEPMEKRQLI 448

Query: 415 -TATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFDESTA 473
            T TI+IVLFT L+ G  T PL++ +            +  +   +D+N   LS  E   
Sbjct: 449 GTTTIVIVLFTILLLGGSTMPLIRLM-------DIEDAKAHRRNKKDVN---LSKTEKMG 498

Query: 474 TNLLRAKDSLSMLLDRPVYTIHSFWRR-------FDDTYMRPVF 510
             +    + LS L +   Y  H   R+        D  Y+ P F
Sbjct: 499 NTV--ESEHLSELTEEE-YEAHYIRRQDLKGFVWLDAKYLNPFF 539

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Homo sapiens (taxid: 9606)

>sp|Q552S0|NHE1_DICDI Sodium/hydrogen exchanger 1 OS=Dictyostelium discoideum GN=nhe1 PE=2 SV=1

 Score =  218 bits (554), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 159/476 (33%), Positives = 250/476 (52%), Gaps = 63/476 (13%)

Query: 42  WVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFF 101
           +V ES+  +  G + GI+         +H++ F+ E FF+++LP IIF  G+ + K  FF
Sbjct: 146 FVPESVAVVTYGIILGIVFRFFYSDIVNHVVSFEPENFFLFILPTIIFETGYSLHKTDFF 205

Query: 102 HNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMG----LSIQDYLALGTIFSSTDTVC 157
           +N   I+MF V G  I+  ++  G + +    G+ G    LS++D  A G+I SSTD VC
Sbjct: 206 NNIGPILMFAVFGTIITFLVVGFGIYIV----GYFGVSIALSLKDSFAFGSIISSTDPVC 261

Query: 158 TL---QILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLY 214
           TL   Q LN D  P+LY LV GE ++NDATS++L++ V+    R++    A+     F  
Sbjct: 262 TLAIFQALNVD--PMLYILVLGESILNDATSMMLYSVVEDTSTRDIIISCAM-----FTV 314

Query: 215 LFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVF 274
           +   S ILGV   LL +L+LK +  GK  ++  I  MV+ +Y+SY+LA  L++SG+L VF
Sbjct: 315 VAIGSVILGVVMALLLSLILKWINIGKFPALETI-FMVMFSYMSYVLAGALDISGVLAVF 373

Query: 275 FCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVT 334
           F GI ++ Y  ++++  +++T+   F   +FI+ETF+FLY G+         ++   F  
Sbjct: 374 FFGITLNQYGAYSLSPYTKLTSGQLFRTAAFISETFLFLYFGL--------SLTAHEFKF 425

Query: 335 SLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIAL 394
            LG++S  IL   L RA  VFP+  L N     + P +    QV IW+AGL RGA + +L
Sbjct: 426 DLGLFSWSILFTCLARAISVFPMCFLLNKFLKTKIPWVI---QVAIWFAGL-RGAFAFSL 481

Query: 395 AFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREP 454
           +    +      +  +A + T T+++V+FT  VFG  T PL++ L               
Sbjct: 482 SLDYIS----EDEHMNAYIRTNTLLVVVFTIFVFGMGTYPLLRVL-------------GI 524

Query: 455 KSPNEDMNLPLLSFDESTATNLLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVF 510
           K+   D +L  +S   S  T   + KD   +            +  FDD Y +P F
Sbjct: 525 KTSQTDQSLDNISKPMSKQT---KQKDRTKL------------YESFDDKYFKPWF 565

Regulation of intracellular pH homeostasis in response to cAMP, which is essential for chemotaxis. Necessary for F-actin localization and the kinetics of actin polymerization during chemotaxis and cell polarity but not for directional sensing.

Dictyostelium discoideum (taxid: 44689)

>sp|Q04121|NHX1_YEAST Endosomal/prevacuolar sodium/hydrogen exchanger OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NHX1 PE=1 SV=1

 Score =  200 bits (509), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/373 (34%), Positives = 208/373 (55%), Gaps = 28/373 (7%)

Query: 41  RWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQF 100
           R V+E++ +I  G V G+II           + F+   FF  LLPPII N+G+++ +  F
Sbjct: 87  RAVHETVLSIFYGMVIGLIIRMSPGHYIQDTVTFNSSYFFNVLLPPIILNSGYELNQVNF 146

Query: 101 FHNFLTIMMFGVIGVFISVSIITVGSW-WLFPKLGFMGLSIQDYLALGTIFSSTDTVCTL 159
           F+N L+I++F + G FIS  +I +  + W F  L  + +S  D +++G   S+TD V  L
Sbjct: 147 FNNMLSILIFAIPGTFISAVVIGIILYIWTFLGLESIDISFADAMSVGATLSATDPVTIL 206

Query: 160 QILNQDET-PLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFST 218
            I N  +  P LY+++FGE ++NDA S+V+F   QK   +     +       FL  FS 
Sbjct: 207 SIFNAYKVDPKLYTIIFGESLLNDAISIVMFETCQKFHGQPATFSSVFEGAGLFLMTFSV 266

Query: 219 STILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGI 278
           S ++GV  G+L AL+LK  +  ++  + E  L++L+AY SY  +    +SGI+++ FCGI
Sbjct: 267 SLLIGVLIGILVALLLKHTHIRRYPQI-ESCLILLIAYESYFFSNGCHMSGIVSLLFCGI 325

Query: 279 FMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAF-DIEKWRMSKLSFVTSLG 337
            + HYA++NM+  S+IT ++ F +++ ++E FIF+Y+G++ F ++E      L  V ++ 
Sbjct: 326 TLKHYAYYNMSRRSQITIKYIFQLLARLSENFIFIYLGLELFTEVELVYKPLLIIVAAIS 385

Query: 338 VYSALILMILLGRAAFVFPLSLLSNYM---------------NSHRSPSISFNHQVVIWW 382
                   I + R   VFPLS   N++               N      I +N+Q++ +W
Sbjct: 386 --------ICVARWCAVFPLSQFVNWIYRVKTIRSMSGITGENISVPDEIPYNYQMMTFW 437

Query: 383 AGLMRGAVSIALA 395
           AGL RGAV +ALA
Sbjct: 438 AGL-RGAVGVALA 449

Endosomal/prevacuolar electroneutral Na(+)/H(+) exchanger which mediates intracellular sequestration of Na(+) cations, regulates vacuolar pH and contributes to osmotolerance following sudden exposure to hyperosmotic media. Contributes also to the postdiauxic/stationary phase resistance to osmotic stress and allows for the continued growth of cells until the acquired osmotolerance response can occur. Involved in hygromycin resistance probably through its influence on the electrochemical proton gradient affecting secondarily the entrance of hygromycin. Mediates pH-dependent vesicle trafficking out of the endosome. Contributes to K(+) sequestration and homeostasis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	520
357459871	557	Sodium/hydrogen exchanger [Medicago trun	0.992	0.926	0.724	0.0
255576266	520	sodium/hydrogen exchanger, putative [Ric	0.996	0.996	0.722	0.0
449465079	529	PREDICTED: sodium/hydrogen exchanger 4-l	0.994	0.977	0.729	0.0
15240519	529	sodium/hydrogen exchanger 4 [Arabidopsis	0.996	0.979	0.729	0.0
356524315	529	PREDICTED: sodium/hydrogen exchanger 4-l	0.994	0.977	0.741	0.0
19919844	529	Na+/H+ exchanger 4 [Arabidopsis thaliana	0.986	0.969	0.732	0.0
297796423	535	ATNHX3 [Arabidopsis lyrata subsp. lyrata	0.996	0.968	0.726	0.0
225460807	521	PREDICTED: sodium/hydrogen exchanger 4-l	0.996	0.994	0.762	0.0
297737517	524	unnamed protein product [Vitis vinifera]	0.994	0.986	0.762	0.0
84795232	527	Na+/H+ antiporter NHEXL1b [Triticum aest	0.957	0.944	0.665	0.0

>gi|357459871|ref|XP_003600216.1| Sodium/hydrogen exchanger [Medicago truncatula] gi|355489264|gb|AES70467.1| Sodium/hydrogen exchanger [Medicago truncatula]

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/544 (72%), Positives = 450/544 (82%), Gaps = 28/544 (5%)

Query: 4   SEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSI 63
           S+  KN+  +H QVVP++LFVA+LCLCL++GHLLEE+RW+NESI AI +G ++G+I+L +
Sbjct: 15  SDADKNLAHDHAQVVPMTLFVAVLCLCLVIGHLLEESRWINESIVAIFVGLIAGMILLLV 74

Query: 64  TKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIIT 123
           TK KSSHIL FDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIM+FGVIGVFIS  IIT
Sbjct: 75  TKGKSSHILTFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISTFIIT 134

Query: 124 VGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDA 183
            GSW LFPKL F  L+++DYLALGTIFSSTDTVCTLQ+L+QDETPLLYSLVFGEGVVNDA
Sbjct: 135 SGSWLLFPKLNFHNLTVRDYLALGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDA 194

Query: 184 TSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGV------------------- 224
           TSVVLFNAVQK+DV  L+ K  LR+  DFLYLFSTST+LGV                   
Sbjct: 195 TSVVLFNAVQKLDVSRLDSK-TLRVIGDFLYLFSTSTVLGVIVSPVNEHCMQKLNKLFYE 253

Query: 225 ------TAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGI 278
                   GLLTA +LK L FG+HSSVREI+LM+LMAYLSY+LAELLELSGILTVFFCGI
Sbjct: 254 MLLFDFMTGLLTAYILKALSFGRHSSVREISLMMLMAYLSYMLAELLELSGILTVFFCGI 313

Query: 279 FMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGV 338
            MSHYAWHN+T+ SRITTRH FA MSFIAETFIFLYVGMDA DIEKWRM+ L F   LG+
Sbjct: 314 SMSHYAWHNVTEISRITTRHVFATMSFIAETFIFLYVGMDALDIEKWRMTHLKFGNLLGI 373

Query: 339 YSALILMILLGRAAFVFPLSLLSNYMN--SHRSPSISFNHQVVIWWAGLMRGAVSIALAF 396
           YS LI +ILLGRAAFVFPLS L+NYMN  +  +PSI+F HQ++IWWAGLMRGAVSIALAF
Sbjct: 374 YSCLIFLILLGRAAFVFPLSALANYMNRRAEETPSITFGHQIIIWWAGLMRGAVSIALAF 433

Query: 397 KQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKS 456
           KQFTYSGVTSDP +ATMIT TII+VLFTTLVFG LT+PLV+YLLPH     N +  E  S
Sbjct: 434 KQFTYSGVTSDPVNATMITITIIVVLFTTLVFGCLTKPLVRYLLPHHATRVNTNHEESTS 493

Query: 457 PNEDMNLPLLSFDESTATNLLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGPDSN 516
           P EDMNLPLLSF+ES ATN+ RAK+SLSML + PVYTIH +WRRFDD+YMRP+FGGP +N
Sbjct: 494 PVEDMNLPLLSFEESAATNISRAKESLSMLFESPVYTIHYYWRRFDDSYMRPLFGGPRAN 553

Query: 517 QSQC 520
            S+C
Sbjct: 554 HSEC 557

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576266|ref|XP_002529026.1| sodium/hydrogen exchanger, putative [Ricinus communis] gi|223531506|gb|EEF33337.1| sodium/hydrogen exchanger, putative [Ricinus communis]

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/519 (72%), Positives = 447/519 (86%), Gaps = 1/519 (0%)

Query: 2   EISEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIIL 61
            +++ A N+  EH QVVP++LFVA+LCLCL++GHLLEENRWVNESITAI++GCV GI IL
Sbjct: 3   RLTDLAGNLAHEHAQVVPLTLFVAVLCLCLVIGHLLEENRWVNESITAIIMGCVCGIFIL 62

Query: 62  SITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI 121
            ++K KSSHILRF+EELFFIYLLPPIIFNAGFQVKKKQFF NF+TIM+FGV+GVFIS  I
Sbjct: 63  VLSKGKSSHILRFNEELFFIYLLPPIIFNAGFQVKKKQFFQNFITIMLFGVVGVFISALI 122

Query: 122 ITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVN 181
           I  GS W FP LG +GL+ +DYLA+G IFSSTDTVCTLQ+LNQD+TPLLYSLVFGEGVVN
Sbjct: 123 IVAGSRWTFPGLGLLGLTGRDYLAIGAIFSSTDTVCTLQVLNQDDTPLLYSLVFGEGVVN 182

Query: 182 DATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGK 241
           DATSVVLFNA+QK+DV  LN K  LR+  DFLYLF TST LGVT GL+TA +LKTLYFG+
Sbjct: 183 DATSVVLFNAIQKMDVTRLNSKTVLRVVGDFLYLFLTSTALGVTTGLVTAFILKTLYFGR 242

Query: 242 HSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFA 301
           HSS+REIALMVLMAYLSY+LAELLELSGILTVFFCGI MSHYAWHN+T+SSRITTRH FA
Sbjct: 243 HSSIREIALMVLMAYLSYMLAELLELSGILTVFFCGILMSHYAWHNVTESSRITTRHVFA 302

Query: 302 MMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLS 361
           MMS++AET IFLYVGMDA DIEKWR SK++F TS+ + S L++++LLGRAAFVFPLS  S
Sbjct: 303 MMSYVAETVIFLYVGMDALDIEKWRTSKINFGTSMSICSTLVMLVLLGRAAFVFPLSGFS 362

Query: 362 NYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIV 421
           N+MN  R+  I+F  QV+IWWAGLMRGAVSIALA+KQFT+SGVTS+P +A M+T TII+V
Sbjct: 363 NFMNRGRTSLITFKQQVIIWWAGLMRGAVSIALAYKQFTFSGVTSNPVNAAMVTTTIIVV 422

Query: 422 LFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFDESTATNLLRAKD 481
           LFTT+VFGFLT+PL+ ++LPH  +  NN  +E K P +D+ LPLLS +ES ATNL RA D
Sbjct: 423 LFTTMVFGFLTKPLIYFMLPHDDNNRNNH-QEVKIPKDDVRLPLLSLEESAATNLQRATD 481

Query: 482 SLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGPDSNQSQC 520
           SLSML++ PVYTIH +W++FD+ YMRP+FGGP S+Q +C
Sbjct: 482 SLSMLIESPVYTIHYYWKKFDNAYMRPIFGGPRSSQQEC 520

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465079|ref|XP_004150256.1| PREDICTED: sodium/hydrogen exchanger 4-like [Cucumis sativus]

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/522 (72%), Positives = 445/522 (85%), Gaps = 5/522 (0%)

Query: 1   MEISEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIII 60
           ME  +  KNI  +H QV+P++LFVA+LC CL++GHLLEENRWVNESITAI+IG V+G II
Sbjct: 1   MEFFQTVKNIGSDHAQVIPLTLFVAVLCFCLVIGHLLEENRWVNESITAIIIGVVTGTII 60

Query: 61  LSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVS 120
           L  +K K+SHIL F+EE+FFIYLLPPIIFNAGFQVKKKQFFHNFLTIM+FGVIGVFIS S
Sbjct: 61  LVCSKGKNSHILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISAS 120

Query: 121 IITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVV 180
           IIT GS WLFP++GF GLS +DY+A+G IFSSTDTVCTLQ+L+Q+ETPLLYSLVFGEGVV
Sbjct: 121 IITAGSQWLFPRMGFHGLSARDYVAIGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVV 180

Query: 181 NDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFG 240
           NDATSVVLFNAVQKID+  LN K AL +  DF YLFSTST+LG+T GLLT+ +LKTLYFG
Sbjct: 181 NDATSVVLFNAVQKIDISRLNSKTALHLLGDFCYLFSTSTVLGLTTGLLTSYILKTLYFG 240

Query: 241 KHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTF 300
           +HSSVRE+A+MVLMAYLSY+LAELLELSGILTVFFCGI MSHYAWHN+TDSSRITTRH F
Sbjct: 241 RHSSVRELAIMVLMAYLSYMLAELLELSGILTVFFCGIIMSHYAWHNVTDSSRITTRHVF 300

Query: 301 AMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLL 360
           AMMSF+AET IFLYVGMDA DIEKW+++KLS    LG  + ++L++L+GRAAFVFPLS +
Sbjct: 301 AMMSFVAETAIFLYVGMDALDIEKWKITKLSLWKLLGTCTIIVLLVLVGRAAFVFPLSAI 360

Query: 361 SNYM----NSHRSPS-ISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMIT 415
           SNY     +   SPS ISF  Q++IWWAGLMRGAVSIALAFKQFTYSGVT DP  ATMIT
Sbjct: 361 SNYFIKREDRSSSPSMISFKQQIIIWWAGLMRGAVSIALAFKQFTYSGVTVDPTHATMIT 420

Query: 416 ATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFDESTATN 475
            T I+VLFTT+VFGFLT+PL++ LLP  Q +++ S   PK   ED+ LPLLS +ES  TN
Sbjct: 421 NTTIVVLFTTVVFGFLTKPLIRCLLPPNQASSSTSNSRPKFTEEDITLPLLSMEESATTN 480

Query: 476 LLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGPDSNQ 517
           +LRAKDSLSML++RPVYTIH FWR+FDD+YMRP+FGG   NQ
Sbjct: 481 VLRAKDSLSMLIERPVYTIHYFWRKFDDSYMRPLFGGSRHNQ 522

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240519|ref|NP_200358.1| sodium/hydrogen exchanger 4 [Arabidopsis thaliana] gi|84029369|sp|Q8S397.2|NHX4_ARATH RecName: Full=Sodium/hydrogen exchanger 4; AltName: Full=Na(+)/H(+) exchanger 4; Short=NHE-4 gi|9758179|dbj|BAB08564.1| sodium proton exchanger [Arabidopsis thaliana] gi|62320490|dbj|BAD95025.1| sodium proton exchanger [Arabidopsis thaliana] gi|332009249|gb|AED96632.1| sodium/hydrogen exchanger 4 [Arabidopsis thaliana]

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/525 (72%), Positives = 444/525 (84%), Gaps = 7/525 (1%)

Query: 3   ISEFAKN-ITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIIL 61
           ++EF  N +  EH QV+PIS+F+AILCLCL++GHLLEENRWVNESITAIL+G  SG +IL
Sbjct: 5   LTEFVTNKLAAEHPQVIPISVFIAILCLCLVIGHLLEENRWVNESITAILVGAASGTVIL 64

Query: 62  SITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI 121
            I+K KSSHIL FDEELFFIYLLPPIIFNAGFQVKKK+FFHNFLTIM FGVIGVFIS  I
Sbjct: 65  LISKGKSSHILVFDEELFFIYLLPPIIFNAGFQVKKKKFFHNFLTIMSFGVIGVFISTVI 124

Query: 122 ITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVN 181
           I+ G+WWLFPKLGF GLS +DYLA+GTIFSSTDTVCTLQIL+QDETPLLYSLVFGEGVVN
Sbjct: 125 ISFGTWWLFPKLGFKGLSARDYLAIGTIFSSTDTVCTLQILHQDETPLLYSLVFGEGVVN 184

Query: 182 DATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGK 241
           DATSVVLFNAVQKI    L G  AL++F +FLYLFSTST+LG+  GL+T+ VLKTLYFG+
Sbjct: 185 DATSVVLFNAVQKIQFESLTGWTALQVFGNFLYLFSTSTLLGIGVGLITSFVLKTLYFGR 244

Query: 242 HSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFA 301
           HS+ RE+A+MVLMAYLSY+LAEL  LSGILTVFFCG+ MSHYA +N+T+SSRIT+RH FA
Sbjct: 245 HSTTRELAIMVLMAYLSYMLAELFSLSGILTVFFCGVLMSHYASYNVTESSRITSRHVFA 304

Query: 302 MMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLS 361
           M+SFIAETFIFLYVG DA D  KW+ S LSF  +LGV   +  ++LLGRAAFVFPLS+L+
Sbjct: 305 MLSFIAETFIFLYVGTDALDFTKWKTSSLSFGGTLGVSGVITALVLLGRAAFVFPLSVLT 364

Query: 362 NYMNSH--RSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATII 419
           N+MN H  R+ SI+F HQV+IWWAGLMRGAVSIALAFKQFTYSGVT DP +A M+T T I
Sbjct: 365 NFMNRHTERNESITFKHQVIIWWAGLMRGAVSIALAFKQFTYSGVTLDPVNAAMVTNTTI 424

Query: 420 IVLFTTLVFGFLTRPLVKYLLPH-PQHATNNSCR--EPKSPNEDMNLPLLSFDESTATNL 476
           +VLFTTLVFGFLT+PLV YLLP    H T N  +  EP SP ED  LPLLSFDES +TN 
Sbjct: 425 VVLFTTLVFGFLTKPLVNYLLPQDASHNTGNRGKRTEPGSPKEDATLPLLSFDESASTNF 484

Query: 477 LRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGP-DSNQSQC 520
            RAKDS+S+L+++PVYTIH +WR+FDDTYMRP+FGGP   NQ +C
Sbjct: 485 NRAKDSISLLMEQPVYTIHRYWRKFDDTYMRPIFGGPRRENQPEC 529

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524315|ref|XP_003530775.1| PREDICTED: sodium/hydrogen exchanger 4-like [Glycine max]

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/522 (74%), Positives = 450/522 (86%), Gaps = 5/522 (0%)

Query: 3   ISEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILS 62
           I E  +N+  EH  VVPISLFVA+LCLCL+VGHLLEENRW+NESI AI++G ++GII+L 
Sbjct: 9   IPEVLRNLVHEHALVVPISLFVAVLCLCLVVGHLLEENRWINESILAIIVGFIAGIILLL 68

Query: 63  ITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSII 122
           +TK KSSHIL F+EELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIM+FGVIGVFISVSII
Sbjct: 69  VTKGKSSHILTFNEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVIGVFISVSII 128

Query: 123 TVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVND 182
           T GSWWLFPKL  +GLS QDYLA+GTIFSSTDTVCTLQ+L+QDETPLLYSLVFGEGVVND
Sbjct: 129 TCGSWWLFPKLKLLGLSGQDYLAIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVND 188

Query: 183 ATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKH 242
           ATSVVLFNAVQK+DV  L+GK    +  +FLYLF TST LGV  GLLTA +LK L FG+H
Sbjct: 189 ATSVVLFNAVQKLDVSRLSGK-TFSVIGEFLYLFITSTGLGVITGLLTAYILKALSFGRH 247

Query: 243 SSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAM 302
           SSVREI+LM+LMAYLSY+LAEL +LSGILTVFFCGI MSHYAW+N+T++SRITTRH FA 
Sbjct: 248 SSVREISLMILMAYLSYMLAELFDLSGILTVFFCGILMSHYAWYNVTETSRITTRHVFAT 307

Query: 303 MSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSN 362
           MSFIAETFIFLYVGMDA DIEKW+M++LS+   +G+YS+LIL+ILLGRAAFVFPLS L+N
Sbjct: 308 MSFIAETFIFLYVGMDALDIEKWKMTQLSYGNLMGIYSSLILLILLGRAAFVFPLSALAN 367

Query: 363 YMN----SHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATI 418
           Y N    S ++ SI+F HQ++IWWAGLMRGAVSIALAFKQFT+SGVT+DP +ATMIT TI
Sbjct: 368 YTNTRATSDQASSITFKHQIIIWWAGLMRGAVSIALAFKQFTFSGVTTDPVNATMITNTI 427

Query: 419 IIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFDESTATNLLR 478
           I+VLF+TLVFGFLT+PL++YLLPH     + S  E   P +D+NLP LS +ES ATN+ R
Sbjct: 428 IVVLFSTLVFGFLTKPLIRYLLPHSATRKSISHSESGPPFDDLNLPFLSLEESAATNISR 487

Query: 479 AKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGPDSNQSQC 520
           AK SLSML++ PV+TIH +WRRFDD YMRP+FGGP  NQSQC
Sbjct: 488 AKASLSMLIESPVFTIHRYWRRFDDAYMRPIFGGPHGNQSQC 529

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19919844|gb|AAM08405.1|AF490588_1 Na+/H+ exchanger 4 [Arabidopsis thaliana]

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/519 (73%), Positives = 439/519 (84%), Gaps = 6/519 (1%)

Query: 8   KNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWK 67
             +  EH QV+PIS+F+AILCLCL++GHLLEENRWVNESITAIL+G  SG +IL I+K K
Sbjct: 11  NKLAAEHPQVIPISVFIAILCLCLVIGHLLEENRWVNESITAILVGAASGTVILLISKGK 70

Query: 68  SSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSW 127
           SSHIL FDEELFFIYLLPPIIFNAGFQVKKK+FFHNFLTIM FGVIGVFIS  II+ G+W
Sbjct: 71  SSHILVFDEELFFIYLLPPIIFNAGFQVKKKKFFHNFLTIMSFGVIGVFISTVIISFGTW 130

Query: 128 WLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVV 187
           WLFPKLGF GLS +DYLA+GTIFSSTDTVCTLQIL+QDETPLLYSLVFGEGVVNDATSVV
Sbjct: 131 WLFPKLGFKGLSARDYLAIGTIFSSTDTVCTLQILHQDETPLLYSLVFGEGVVNDATSVV 190

Query: 188 LFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVRE 247
           LFNAVQKI    L G  AL++F +FLYLFSTST+LG+  GL+T+ VLKTLYFG+HS+ RE
Sbjct: 191 LFNAVQKIQFESLTGWTALQVFGNFLYLFSTSTLLGIGVGLITSFVLKTLYFGRHSTTRE 250

Query: 248 IALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIA 307
           +A+MVLMAYLSY+LAEL  LSGILTVFFCG+ MSHYA +N+T+SSRIT+RH FAM+SFIA
Sbjct: 251 LAIMVLMAYLSYMLAELFSLSGILTVFFCGVLMSHYASYNVTESSRITSRHVFAMLSFIA 310

Query: 308 ETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSH 367
           ETFIFLYVG DA D  KW+ S LSF  +LGV   +  ++LLGRAAFVFPLS+L+N+MN H
Sbjct: 311 ETFIFLYVGTDALDFTKWKTSSLSFGGTLGVSGVITALVLLGRAAFVFPLSVLTNFMNRH 370

Query: 368 --RSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTT 425
             R+ SI+F HQV+IWWAGLMRGAVSIALAFKQFTYSGVT DP +A M+T T I+VLFTT
Sbjct: 371 TERNESITFKHQVIIWWAGLMRGAVSIALAFKQFTYSGVTLDPVNAAMVTNTTIVVLFTT 430

Query: 426 LVFGFLTRPLVKYLLPH-PQHATNNSCR--EPKSPNEDMNLPLLSFDESTATNLLRAKDS 482
           LVFGFLT+PLV YLLP    H T N  +  EP SP ED  LPLLSFDES +TN  RAKDS
Sbjct: 431 LVFGFLTKPLVNYLLPQDASHNTGNRGKRTEPGSPKEDATLPLLSFDESASTNFNRAKDS 490

Query: 483 LSMLLDRPVYTIHSFWRRFDDTYMRPVFGGP-DSNQSQC 520
           +S+L+++PVYTIH +WR+FDDTYMRP+FGGP   NQ +C
Sbjct: 491 ISLLMEQPVYTIHRYWRKFDDTYMRPIFGGPRRENQPEC 529

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796423|ref|XP_002866096.1| ATNHX3 [Arabidopsis lyrata subsp. lyrata] gi|297311931|gb|EFH42355.1| ATNHX3 [Arabidopsis lyrata subsp. lyrata]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/531 (72%), Positives = 447/531 (84%), Gaps = 13/531 (2%)

Query: 3   ISEFAKN-ITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIIL 61
           ++EF  N +  EH QV+PIS+F+AILCLCL++GHLLEENRWVNESITAIL+G +SG +IL
Sbjct: 5   LTEFLTNKLAAEHPQVIPISVFIAILCLCLVIGHLLEENRWVNESITAILVGALSGTVIL 64

Query: 62  SITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI 121
            I+K KSSHIL FDEELFFIYLLPPIIFNAGFQVKKK+FFHNFLTIM FGVIGVFIS  I
Sbjct: 65  LISKGKSSHILVFDEELFFIYLLPPIIFNAGFQVKKKKFFHNFLTIMSFGVIGVFISTVI 124

Query: 122 ITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVN 181
           I+ G+W+LFPKLGF GLS +DYLA+GTIFSSTDTVCTLQIL+QDETPLLYSLVFGEGVVN
Sbjct: 125 ISFGTWFLFPKLGFKGLSARDYLAIGTIFSSTDTVCTLQILHQDETPLLYSLVFGEGVVN 184

Query: 182 DATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGK 241
           DATSVVLFNAVQKI    LNG  ALR+F +FLYLFSTST+LG+  GL+T+ VLKTLYFG+
Sbjct: 185 DATSVVLFNAVQKIHFESLNGWTALRVFGNFLYLFSTSTLLGIAVGLVTSFVLKTLYFGR 244

Query: 242 HSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHT-- 299
           HS+ RE+A+MVLMAYLSY+LAEL  LSGILTVFFCG+ MSHYA +N+T+SSRIT+RH   
Sbjct: 245 HSTTRELAIMVLMAYLSYMLAELFSLSGILTVFFCGVLMSHYASYNVTESSRITSRHCFR 304

Query: 300 ----FAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVF 355
               FAMMSFIAETFIFLYVG DA D+ KW  S LS   +LGV S +  ++LLGRAAFVF
Sbjct: 305 QLHIFAMMSFIAETFIFLYVGTDALDVTKWNTSSLSVGGTLGVSSVITGLVLLGRAAFVF 364

Query: 356 PLSLLSNYMNSH--RSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATM 413
           PLS+L+N+MN H  R+ SI+F HQV+IWWAGLMRGAVSIALAFKQFTYSGVT DP +A M
Sbjct: 365 PLSILTNFMNRHTERNESITFKHQVIIWWAGLMRGAVSIALAFKQFTYSGVTLDPVNAAM 424

Query: 414 ITATIIIVLFTTLVFGFLTRPLVKYLLPH-PQHATNNSCR--EPKSPNEDMNLPLLSFDE 470
           +T T I+VLFTTLVFGFLT+PLV YLLPH   H T N  +  EP SP ED  LPLLSFDE
Sbjct: 425 VTTTTIVVLFTTLVFGFLTKPLVNYLLPHDASHNTGNRGKRTEPGSPKEDATLPLLSFDE 484

Query: 471 STATNLLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGP-DSNQSQC 520
           S +TN  RAKDS+S+L+++PVYTIH +WR+FDDTYMRP+FGGP   NQ +C
Sbjct: 485 SASTNFNRAKDSISLLMEQPVYTIHRYWRKFDDTYMRPIFGGPRRENQPEC 535

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460807|ref|XP_002276813.1| PREDICTED: sodium/hydrogen exchanger 4-like [Vitis vinifera]

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/523 (76%), Positives = 455/523 (86%), Gaps = 5/523 (0%)

Query: 1   MEISEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIII 60
           M  S FA NI  +H QVV IS+FVA+LCLCL++GHLLEENRW+NES TAI+IGC++G II
Sbjct: 1   MSASGFAMNIAGDHAQVVLISVFVAVLCLCLVIGHLLEENRWLNESTTAIIIGCITGTII 60

Query: 61  LSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVS 120
           L ++K KSSHILRF+EELFFIYLLPPIIFNAGFQVKKKQFF NF+TIM+FGVIGVFIS S
Sbjct: 61  LLLSKGKSSHILRFNEELFFIYLLPPIIFNAGFQVKKKQFFQNFITIMLFGVIGVFISSS 120

Query: 121 IITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVV 180
           IIT G+WWLFP+ GF GLS QDYLA+GTIFSSTDTVCTLQ+L+QDETPLLYSLVFGEGVV
Sbjct: 121 IITAGAWWLFPRFGFTGLSAQDYLAIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVV 180

Query: 181 NDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFG 240
           NDATSVVLFNAVQK+D  +LNG AALR+  D LYLFSTST LGV AGLLTA  LKTLY G
Sbjct: 181 NDATSVVLFNAVQKLDKSKLNGWAALRVLLDSLYLFSTSTALGVVAGLLTAYTLKTLYIG 240

Query: 241 KHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTF 300
           +HS+VREIALMVLMAYLSY LAEL  LSGILTVFFCGI MSHYA HN+T SSRITTRH F
Sbjct: 241 RHSTVREIALMVLMAYLSYTLAELFHLSGILTVFFCGILMSHYASHNVTQSSRITTRHIF 300

Query: 301 AMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLL 360
           A MSFIAETFIFLYVG+DA DIEKW++SKLSF TS+G+YS ++L+I LGRAAFVFPLS  
Sbjct: 301 ATMSFIAETFIFLYVGIDALDIEKWKLSKLSFRTSVGIYSTVVLLISLGRAAFVFPLSTF 360

Query: 361 SNYMN--SHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATI 418
           SNY++  + R  SISF HQV+IWWAGLMRGAVSIALAFKQFTYSGVT DP +ATM+T TI
Sbjct: 361 SNYVHRRADRLSSISFKHQVIIWWAGLMRGAVSIALAFKQFTYSGVTLDPANATMVTTTI 420

Query: 419 IIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCR-EPKSPNEDMNLPLLSFDESTATNLL 477
           I+VLFTTLVFGFLT+PL+ +L PH  H  NN+   EP+SP ED++LPLLS +ES  TN+L
Sbjct: 421 IVVLFTTLVFGFLTKPLISFLQPH--HTNNNTSHGEPRSPKEDLSLPLLSLEESAETNIL 478

Query: 478 RAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGPDSNQSQC 520
           RAK+SLSML++RPVYTIH++WR+FDDTYMRPVFGGP  +QS C
Sbjct: 479 RAKESLSMLIERPVYTIHNYWRKFDDTYMRPVFGGPCRDQSAC 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737517|emb|CBI26718.3| unnamed protein product [Vitis vinifera]

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/523 (76%), Positives = 455/523 (86%), Gaps = 6/523 (1%)

Query: 1   MEISEFAKNITQEHTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIII 60
           M  S FA NI  +H QVV IS+FVA+LCLCL++GHLLEENRW+NES TAI+IGC++G II
Sbjct: 1   MSASGFAMNIAGDHAQVVLISVFVAVLCLCLVIGHLLEENRWLNESTTAIIIGCITGTII 60

Query: 61  LSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVS 120
           L ++K KSSHILRF+EELFFIYLLPPIIFNAGFQVKKKQFF NF+TIM+FGVIGVFIS S
Sbjct: 61  LLLSKGKSSHILRFNEELFFIYLLPPIIFNAGFQVKKKQFFQNFITIMLFGVIGVFISSS 120

Query: 121 IITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVV 180
           IIT G+WWLFP+ GF GLS QDYLA+GTIFSSTDTVCTLQ+L+QDETPLLYSLVFGEGVV
Sbjct: 121 IITAGAWWLFPRFGFTGLSAQDYLAIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVV 180

Query: 181 NDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFG 240
           NDATSVVLFNAVQK+D  +LNG AALR+  D LYLFSTST LGV AGLLTA  LKTLY G
Sbjct: 181 NDATSVVLFNAVQKLDKSKLNGWAALRVLLDSLYLFSTSTALGVVAGLLTAYTLKTLYIG 240

Query: 241 KHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTF 300
           +HS+VREIALMVLMAYLSY LAEL  LSGILTVFFCGI MSHYA HN+T SSRITTRH F
Sbjct: 241 RHSTVREIALMVLMAYLSYTLAELFHLSGILTVFFCGILMSHYASHNVTQSSRITTRHIF 300

Query: 301 AMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLL 360
           A MSFIAETFIFLYVG+DA DIEKW++SKLSF TS+G+YS ++L+I LGRAAFVFPLS  
Sbjct: 301 ATMSFIAETFIFLYVGIDALDIEKWKLSKLSFRTSVGIYSTVVLLISLGRAAFVFPLSTF 360

Query: 361 SNYMN--SHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATI 418
           SNY++  + R  SISF HQV+IWWAGLMRGAVSIALAFKQFTYSGVT DP +ATM+T TI
Sbjct: 361 SNYVHRRADRLSSISFKHQVIIWWAGLMRGAVSIALAFKQFTYSGVTLDPANATMVTTTI 420

Query: 419 IIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCR-EPKSPNEDMNLPLLSFDESTATNLL 477
           I+VLFTTLVFGFLT+PL+ +L PH  H  NN+   EP+SP ED++LPLLS +ES  TN+L
Sbjct: 421 IVVLFTTLVFGFLTKPLISFLQPH--HTNNNTSHGEPRSPKEDLSLPLLSLEESAETNIL 478

Query: 478 RAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGGP-DSNQSQ 519
           RAK+SLSML++RPVYTIH++WR+FDDTYMRPVFGGP +S  SQ
Sbjct: 479 RAKESLSMLIERPVYTIHNYWRKFDDTYMRPVFGGPYESGNSQ 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84795232|gb|ABC65852.1| Na+/H+ antiporter NHEXL1b [Triticum aestivum]

 Score =  710 bits (1832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/505 (66%), Positives = 418/505 (82%), Gaps = 7/505 (1%)

Query: 17  VVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDE 76
           VV I +F A+LCLCL+ GHLLEEN+WVNESITA++IGC+ G +I  ++K ++SHILRFDE
Sbjct: 23  VVSICVFTAVLCLCLVAGHLLEENKWVNESITALIIGCIVGALIFLLSKGRNSHILRFDE 82

Query: 77  ELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFM 136
           +LFFIY+LPPIIFNAGFQVKKKQFFHNFLTIM FGV GVFISV+I++ G +WL PK+GF 
Sbjct: 83  QLFFIYVLPPIIFNAGFQVKKKQFFHNFLTIMSFGVFGVFISVAIVSAGFYWLLPKVGFG 142

Query: 137 GLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKID 196
            L   DYLALG IFSSTDTVCTLQ+++QDETP LYSLVFGEGVVNDATSVVLFNA++ +D
Sbjct: 143 KLDAVDYLALGVIFSSTDTVCTLQVISQDETPRLYSLVFGEGVVNDATSVVLFNAIKNMD 202

Query: 197 VRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAY 256
           + ++   A L++  DFLYLF+TSTILG T GL TA VLK LYFG+HS+ RE+ALM LMAY
Sbjct: 203 ITKIKSGAVLKVIGDFLYLFATSTILGATIGLFTAYVLKALYFGRHSTDREVALMALMAY 262

Query: 257 LSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVG 316
           LSY+LAELL LSGILTVFFCGI MSHYAWHN+T+SSRITTRH FA +SFIAETFIFLYVG
Sbjct: 263 LSYMLAELLSLSGILTVFFCGIVMSHYAWHNVTESSRITTRHIFATLSFIAETFIFLYVG 322

Query: 317 MDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYM--NSHRSPSISF 374
           MDA D++KW+ ++ SF TS+G++  +I +ILLGRAAFVFPLS+LSN+M  NS ++P I+F
Sbjct: 323 MDALDMDKWKTTQASFKTSIGIFGVIISLILLGRAAFVFPLSILSNFMSGNSEKAP-ITF 381

Query: 375 NHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRP 434
            HQVVIWWAGLMRGAVSIALA+ QFT+SGVT DP  AT+IT+TI++V FTTLVFGFLTRP
Sbjct: 382 KHQVVIWWAGLMRGAVSIALAYNQFTFSGVTQDPVHATIITSTIVVVFFTTLVFGFLTRP 441

Query: 435 LVKYLLPHPQHATNNSCRE--PKSPNEDMNLPLLSFDES--TATNLLRAKDSLSMLLDRP 490
           ++  +LP  +H      R     SP ++  LP L  +++  + +  ++AK S+SM+L+RP
Sbjct: 442 MISAMLPQHRHREPAGGRSTGSNSPKDEFILPFLGDEDASGSGSGFVQAKRSISMMLERP 501

Query: 491 VYTIHSFWRRFDDTYMRPVFGGPDS 515
           ++T+H +WR+FDD +MRP+FGGP S
Sbjct: 502 IHTVHIYWRKFDDRFMRPIFGGPRS 526

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y2E8	SL9A8_HUMAN	No assigned EC number	0.3148	0.8942	0.8003	yes	no
Q8S397	NHX4_ARATH	No assigned EC number	0.7295	0.9961	0.9792	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	520
TIGR00840	559	TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	1e-65
COG0025	429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	4e-42
pfam00999	370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	5e-37
TIGR00831	525	TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo	1e-26
COG3263	574	COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip	2e-11
PRK05326	562	PRK05326, PRK05326, potassium/proton antiporter; R	3e-09
COG0475	397	COG0475, KefB, Kef-type K+ transport systems, memb	3e-07

>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3

 Score =  221 bits (566), Expect = 1e-65
 Identities = 143/471 (30%), Positives = 220/471 (46%), Gaps = 50/471 (10%)

Query: 11  TQEHTQV-VPISLFVAILCLCLIVGHLLEE-NRWVNESITAILIGCVSGIIILSITKWKS 68
             EH Q      L++ +  L  I  HL  +  R V ES+  I+ G + G II       S
Sbjct: 1   DYEHVQSPYEFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGII-----KAS 55

Query: 69  SHI--LRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGS 126
            HI     D   FF+YLLPPI+ +AG+ + ++ FF N  +I++F V+G  I+  +I +  
Sbjct: 56  PHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSL 115

Query: 127 WWLFPKLGFMGLSIQ--DYLALGTIFSSTDTVCTLQILNQ-DETPLLYSLVFGEGVVNDA 183
           + +    GF  + I   D L  G++ S+ D V  L +  +      LY ++FGE ++NDA
Sbjct: 116 YGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFGESLLNDA 175

Query: 184 TSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFST---STILGVTAGLLTALVLKTLYFG 240
            +VVL+N   K           + +F      F       ++GV  G L A + +   F 
Sbjct: 176 VTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITR---FT 232

Query: 241 KHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTF 300
            H    E   + L++YLSY+ AE L LSGIL + FCGI M  Y   NM+  S+ T ++  
Sbjct: 233 HHIRQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFM 292

Query: 301 AMMSFIAETFIFLYVGMDAFD-IEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSL 359
            M+S ++ET IF+++G+       +W     +FV       A +   ++ R   V     
Sbjct: 293 KMLSSLSETLIFIFLGVSLVTENHEW---NWAFVV------ATLSFCVIYRVLGVR---T 340

Query: 360 LSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAF----KQFTYSGVTSDPDSATMIT 415
           LS   N  R   I +  Q+VI++AGL RGAV+ ALA     K F        P     +T
Sbjct: 341 LSWITNEFRPVEIPYKDQLVIFYAGL-RGAVAFALALLLDEKIF--------PYKFLFVT 391

Query: 416 ATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLL 466
            T+++V FT +  G   +PLV+ L           C      NE+++    
Sbjct: 392 TTLVVVFFTVIFQGGTIKPLVEVL------KVKKGCISKTKINEELHDREF 436

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559

>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

 Score =  155 bits (394), Expect = 4e-42
 Identities = 93/396 (23%), Positives = 166/396 (41%), Gaps = 30/396 (7%)

Query: 47  ITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLT 106
           +   L+G   G+ ++S            D ELF +  L  ++F  G ++  ++    + +
Sbjct: 37  LLLGLLGGPPGLNLISPDLE-------LDPELFLVLFLAILLFAGGLELDLRELRRVWRS 89

Query: 107 IMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE 166
           I++  +  V I+   I + + WL P     G+ +     LG I S TD V    I  +  
Sbjct: 90  ILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVR 144

Query: 167 TPL-LYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVT 225
            P  + +++ GE ++ND   +VLF       +              FL       +LG+ 
Sbjct: 145 VPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGW-ALLLFLIEALGGILLGLL 203

Query: 226 AGLLTALVLKTLYFGKHSSV-REIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYA 284
            G L   +L+ L     +S   E  L +L+A+ +Y+LAE L +SGIL V   G+ +    
Sbjct: 204 LGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAV 263

Query: 285 WHNMTDSS-RITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALI 343
             N++ +S R+     + ++ F+    +F+ +G          +  L  +         +
Sbjct: 264 RINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLL-------VAL 316

Query: 344 LMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSG 403
           + +LL R  +VF     S   N      + +  ++ + WAG  RG VS+ALA        
Sbjct: 317 VAVLLARPLWVFLSLKGS---NLKLRDPLPWRERLFLSWAG-PRGVVSLALA---LLIPL 369

Query: 404 VTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYL 439
               P    ++    +++LF+ LV G    PL K L
Sbjct: 370 ELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKL 405

Length = 429

>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family

 Score =  140 bits (354), Expect = 5e-37
 Identities = 105/416 (25%), Positives = 178/416 (42%), Gaps = 48/416 (11%)

Query: 20  ISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELF 79
             L + +  L  ++   L     +   +  IL G + G   L +   +    L    E+ 
Sbjct: 1   AVLLLLLALLAGLLARRLG----LPPVVGLILAGILLGPSGLGL--VEPDLDL----EVL 50

Query: 80  FIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLS 139
               LP ++F AG ++  ++   N  +I++  ++GV I   ++ +    L      +G+ 
Sbjct: 51  AELGLPLLLFLAGLELDLRELRKNGKSILLLALLGVLIPF-LLGLLLALLG----GLGIP 105

Query: 140 IQDYLALGTIFSSTDTVCTLQIL-NQDETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDV 197
           + + L  G   S+T  V  L IL  +      L +L+ GE V+NDA +VVL   +  +  
Sbjct: 106 LLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLALAG 165

Query: 198 RELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYL 257
                   L +   FL +     +LG+  G L  L+ +   F       E+ L++ +A L
Sbjct: 166 VGGLSDLGL-LLLIFLVVALGGLLLGLVFGWLLRLITR---FTSGDRELEVLLVLALALL 221

Query: 258 SYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGM 317
           + +LAELL LSGIL  F  G+ +S+YA+ N                  +     F+ VG+
Sbjct: 222 AALLAELLGLSGILGAFLAGLVLSNYAFANELSEK------LEPFGYGLFLPLFFVSVGL 275

Query: 318 DAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQ 377
            + D+    +S L  V        L++ ILLG+   VF L+ L            S    
Sbjct: 276 -SLDLSSLLLSLLLLVL------LLLVAILLGKLLGVFLLARLLGL---------SLREA 319

Query: 378 VVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTR 433
           +++ + GL RGAVS+ALA       G+        + T  + +VL TTL+   L +
Sbjct: 320 LIVGFGGLQRGAVSLALAA-----IGLQLGLIDRELYTLLVAVVLLTTLLKPLLKK 370

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form

 Score =  112 bits (282), Expect = 1e-26
 Identities = 88/384 (22%), Positives = 158/384 (41%), Gaps = 42/384 (10%)

Query: 74  FDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKL 133
            D E+     LPP++F A      ++   NF  I +   + V ++  ++     W+    
Sbjct: 46  LDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWI---- 101

Query: 134 GFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSLVFGEGVVNDATSVVLFNAV 192
             +G+ +   L LG + S TD V  L        P  L  L+ GE ++ND  ++V+F   
Sbjct: 102 --LGIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVF--- 156

Query: 193 QKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTA-LVLKTLYFGKHSSVREIALM 251
             I V    GK         L  F+   + G+ AGL    L  + L       + EIAL 
Sbjct: 157 -AIAVAVALGKGVFDPLNAALD-FAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALT 214

Query: 252 VLMAYLSYILAELLELSGILTVFFCGIFMSHYA-WHNMTDSSRITTRHTFAMMSFIAETF 310
           +L  +  ++LAE    SG++ V   G+ +++Y    +M+ ++R+     ++++ F+    
Sbjct: 215 ILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGI 274

Query: 311 IFLYVGMD--------------AFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFP 356
           IF+ +G+               A       +    F  +  +Y  +  +       F++ 
Sbjct: 275 IFILIGVQTPGTIFSAWKEILVAPAAVILAL----FTNAFVIYPVMTYV------RFLWT 324

Query: 357 LSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIA--LAFKQFTYSGVTSDPDSATMI 414
           +   SN     +        + V+ WAGL RGA+ +A  L+F     SG+   P    ++
Sbjct: 325 MKPFSNRFLKKKPMEFGTRWKHVVSWAGL-RGAIPLALALSFPNQLLSGMAF-PARYELV 382

Query: 415 TATIIIVLFTTLVFGFLTRPLVKY 438
                ++LF+ LV G      VK 
Sbjct: 383 FLAAGVILFSLLVQGISLPIFVKR 406

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in (1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles. This model is specific for the bacterial members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 525

>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 79/362 (21%), Positives = 133/362 (36%), Gaps = 53/362 (14%)

Query: 87  IIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLAL 146
           I+F+ GF  +   F       +    +GV I+  +  V + +L        L   + L +
Sbjct: 71  ILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL------NLDWLEGLLI 124

Query: 147 GTIFSSTDTVCTLQILN-QDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAA 205
           G I  STD      +L  ++    + S +  E   ND  +V L      I + EL     
Sbjct: 125 GAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGSNDPMAVFL-----TITLIELIAGGE 179

Query: 206 LRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIAL-----MVLM---AYL 257
             +   FL  F     LG+  GL    +L  L       +  I L      +L      L
Sbjct: 180 TNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQL-------INRINLDSGLYPILALAGGLL 232

Query: 258 SYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGM 317
            + L   +  SGIL V+  G+ +      N    +R      F  ++++A+  +FL +G+
Sbjct: 233 IFSLTGAIGGSGILAVYLAGLLLG-----NRPIRARHGILRFFDGLAWLAQILMFLVLGL 287

Query: 318 DAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQ 377
                +   ++  + + SL        MI + R   VF   L       +R        +
Sbjct: 288 LVTPSQLLPIAIPAILLSLW-------MIFVARPLAVF---LGLIPFRFNR------REK 331

Query: 378 VVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVK 437
           + + W GL RGAV I LA     +  +    ++         +VL + L+ G       K
Sbjct: 332 LFVSWVGL-RGAVPIILA----IFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPWAAK 386

Query: 438 YL 439
            L
Sbjct: 387 KL 388

Length = 574

>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed

 Score = 59.1 bits (144), Expect = 3e-09
 Identities = 81/337 (24%), Positives = 134/337 (39%), Gaps = 52/337 (15%)

Query: 113 IGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPL--- 169
           +GV I+  +  + + WL       GL   + L LG I  STD      +L      L   
Sbjct: 96  LGVLITAGLTGLFAHWLL------GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKER 149

Query: 170 LYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLL 229
           + S +  E   ND  +V L   + ++      G  +      FL  F    ++G+  G L
Sbjct: 150 VASTLEIESGSNDPMAVFLTITLIELITGGETG-LSWGFLLLFLQQFGLGALIGLLGGWL 208

Query: 230 TALVLKTLYF---GKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWH 286
              +L  +     G +       L++  A L + L   L  SG L V+  G+ +      
Sbjct: 209 LVQLLNRIALPAEGLYP-----ILVLAGALLIFALTAALGGSGFLAVYLAGLVLG----- 258

Query: 287 NMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMI 346
           N     R +    F  ++++A+  +FL +G+          S+L  +    +  AL  +I
Sbjct: 259 NRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTP------SRLLDIALPALLLALF-LI 311

Query: 347 LLGRAAFVFPLSLLSNYMNSHRSP-SISFNHQVVIWWAGLMRGAVSIALAFKQFTY---S 402
           L+ R   VF LSLL         P   +   ++ I W GL RGAV I LA    T+   +
Sbjct: 312 LVARPLAVF-LSLL---------PFRFNLREKLFISWVGL-RGAVPIVLA----TFPMMA 356

Query: 403 GVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYL 439
           G+   P++  +      +VL + L+ G       + L
Sbjct: 357 GL---PNAQLIFNVVFFVVLVSLLLQGTTLPWAARKL 390

Length = 562

>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 84/440 (19%), Positives = 159/440 (36%), Gaps = 60/440 (13%)

Query: 14  HTQVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILR 73
               + +   + +L + +I+G L +    +   +  +L G + G   L +    SS I+ 
Sbjct: 2   EMLSLILLQLLILLLVAVILGPLFKRLG-LPPVLGYLLAGIILGPWGLLLIIE-SSEIIE 59

Query: 74  FDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKL 133
              EL  ++LL    F  G +   ++      ++   G+    + ++   +    L   L
Sbjct: 60  LLAELGVVFLL----FLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLLL--L 110

Query: 134 GFMGLSIQDYLALGTIFSSTDTVCTLQIL---NQDETPLLYSLVFGEGVVNDATSVVLFN 190
           G +GLS+   L LG   + + T   L+IL      +T     L+ G  V +D  +++L  
Sbjct: 111 GILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREG-QLILGALVFDDIAAILLLA 169

Query: 191 AVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTL-YFGKHSSVREIA 249
            V  +                 L L            LL   +L  L      +   E+ 
Sbjct: 170 IVPAL------AGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELF 223

Query: 250 LMVLMAY--LSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIA 307
           ++ ++     +  LAELL LS IL  F  G+ +S          S          +    
Sbjct: 224 ILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSE---------SEYRKHELEEKIEPFG 274

Query: 308 ETFI----FLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNY 363
           +       F+ VGM + D+          + +L +   L+ + +LG+    +  + L   
Sbjct: 275 DGLFIPLFFISVGM-SLDLGV-------LLENLLLILLLVALAILGKILGAYLAARL--- 323

Query: 364 MNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLF 423
                   + F+ ++ +    L+R     A                S  ++TA +I+ + 
Sbjct: 324 --------LGFSKRLALGIGLLLRQGGEFAFVLAGIALGS----AISEALLTAVVILSMI 371

Query: 424 TTLVFGFLTRPLVKYLLPHP 443
           TT +   LT  L+K LL   
Sbjct: 372 TTPILPLLTPILLKRLLKKS 391

Length = 397

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	520
KOG1965	575	consensus Sodium/hydrogen exchanger protein [Inorg	100.0
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	100.0
KOG1966	670	consensus Sodium/hydrogen exchanger protein [Inorg	100.0
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	100.0
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	100.0
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	100.0
PRK05326	562	potassium/proton antiporter; Reviewed	100.0
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	100.0
KOG4505	467	consensus Na+/H+ antiporter [Inorganic ion transpo	100.0
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	99.96
PLN03159	832	cation/H(+) antiporter 15; Provisional	99.96
PRK03562	621	glutathione-regulated potassium-efflux system prot	99.96
PRK10669	558	putative cation:proton antiport protein; Provision	99.95
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	99.95
PRK03659	601	glutathione-regulated potassium-efflux system prot	99.95
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	99.65
KOG1650	769	consensus Predicted K+/H+-antiporter [Inorganic io	99.57
PRK14853	423	nhaA pH-dependent sodium/proton antiporter; Provis	99.05
TIGR00773	373	NhaA Na+/H+ antiporter NhaA. These proteins are me	98.36
PRK09560	389	nhaA pH-dependent sodium/proton antiporter; Review	97.48
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	97.27
PRK09561	388	nhaA pH-dependent sodium/proton antiporter; Review	97.18
PRK14855	423	nhaA pH-dependent sodium/proton antiporter; Provis	97.09
PRK14856	438	nhaA pH-dependent sodium/proton antiporter; Provis	97.06
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.96
PF06965	378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	96.56
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	96.53
PRK14854	383	nhaA pH-dependent sodium/proton antiporter; Provis	96.46
COG3004	390	NhaA Na+/H+ antiporter [Inorganic ion transport an	96.11
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	95.69
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.89
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.66
PRK10669	558	putative cation:proton antiport protein; Provision	94.38
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	93.9
COG0385	319	Predicted Na+-dependent transporter [General funct	93.8
COG2855	334	Predicted membrane protein [Function unknown]	93.08
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	92.68
PLN03159	832	cation/H(+) antiporter 15; Provisional	92.41
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	90.92
TIGR00808	254	malonate_madM malonate transporter, MadM subunit.	90.8
COG2431	297	Predicted membrane protein [Function unknown]	90.75
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	89.99
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	89.09
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	88.72
PF05982	327	DUF897: Domain of unknown function (DUF897) ; Inte	87.44
COG3493	438	CitS Na+/citrate symporter [Energy production and	87.35
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	86.87
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	86.59
TIGR00698	335	conserved hypothetical integral membrane protein.	86.42
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	86.2
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	86.12
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	85.33
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	85.29
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	85.14
TIGR00841	286	bass bile acid transporter. Functionally character	84.09
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	83.34
KOG3826	252	consensus Na+/H+ antiporter [Inorganic ion transpo	82.31
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	81.78

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.6e-83  Score=657.33  Aligned_cols=494  Identities=46%  Similarity=0.730  Sum_probs=428.1

Q ss_pred             cccCCccchHHHHHHHHHHHHHHHHHHHHhhcC--cchhHHHHHHHHHHHHHHHHhhccccCc---cccccChhHHHHHh
Q 010004            9 NITQEHTQVVPISLFVAILCLCLIVGHLLEENR--WVNESITAILIGCVSGIIILSITKWKSS---HILRFDEELFFIYL   83 (520)
Q Consensus         9 ~~~~~~~~~~~l~~~~~lL~~~~~~~~~~~~~~--~lp~~~~~ll~Gll~G~~~~~~~~~~~~---~~~~~~~~~f~~~~   83 (520)
                      .++++|++.+.+++++.+|+++++.+|+++++|  ++||++..+++|+++|.++++...++++   ....++||.|+.++
T Consensus        26 ~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vL  105 (575)
T KOG1965|consen   26 ASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVL  105 (575)
T ss_pred             hhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHh
Confidence            356789999999999999999999999999765  9999999999999999999988887777   67799999999999


Q ss_pred             hHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhh
Q 010004           84 LPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILN  163 (520)
Q Consensus        84 L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~  163 (520)
                      ||||+|++||++++++|+||+++|+.++++||++++.++|.+++++.......+++|.+|+++||++||||||+|++|++
T Consensus       106 LPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfn  185 (575)
T KOG1965|consen  106 LPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFN  185 (575)
T ss_pred             hchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHH
Confidence            99999999999999999999999999999999999999999998875433344899999999999999999999999999


Q ss_pred             cCCC-cchhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010004          164 QDET-PLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKH  242 (520)
Q Consensus       164 ~~~~-~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~  242 (520)
                      |+++ |++|++++|||++|||++||+|+++..+...+.+.....+.++.|++.+++|..+|+++|++.++++|+++. |+
T Consensus       186 el~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l-~~  264 (575)
T KOG1965|consen  186 ELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYL-RR  264 (575)
T ss_pred             HhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence            9987 689999999999999999999999999988776666667899999999999999999999999999999987 57


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhh
Q 010004          243 SSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDI  322 (520)
Q Consensus       243 ~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~  322 (520)
                      .+..|..++++++|.+|++||.+|+||++++++||++|+||+++|+++++|.++||+|+++++++|+++|.|+|+.+.+.
T Consensus       265 ~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~  344 (575)
T KOG1965|consen  265 TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDF  344 (575)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCCccchhhheecCCchhHHHHHHhhhhhcc
Q 010004          323 EKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHR-SPSISFNHQVVIWWAGLMRGAVSIALAFKQFTY  401 (520)
Q Consensus       323 ~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~  401 (520)
                      ++|.+.      .+++.....++++++|++.+||++++.|+.||.. .++++.|+|.+|||+|..|||+++|||.....+
T Consensus       345 ~k~~~~------~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~  418 (575)
T KOG1965|consen  345 QKHVYK------SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTD  418 (575)
T ss_pred             cceeee------chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccc
Confidence            888654      1344555667899999999999999999998754 556999999999999944999999999976443


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHhhhhhchHHHHHHhCCCCCCCCCCCCC--------C--------CCCCCccCCCCc
Q 010004          402 SGVTSDPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCR--------E--------PKSPNEDMNLPL  465 (520)
Q Consensus       402 ~~~~~~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~--------~--------~~~~~~~~~~~~  465 (520)
                      .+++   .+++++++|+.+|++|+++.|.++.|+++++.++.++..+.+++        +        ..+..++.+++.
T Consensus       419 ~~~~---~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~~i~~  495 (575)
T KOG1965|consen  419 SPHT---GGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAADEVDESWRLEPGVEFYLVTKLGVLSLTSSAYITI  495 (575)
T ss_pred             cccc---cccEEEEeeeeeeeeeeeeeCCccHHHHHHhcccccccccccchhhhccccccccccccccccccccccCcch
Confidence            3221   56999999999999999999999999999999876654421100        0        001112222221


Q ss_pred             ------ccCCcccccccccccccccccccCCchhhhhHHhhhhccccccccCC
Q 010004          466 ------LSFDESTATNLLRAKDSLSMLLDRPVYTIHSFWRRFDDTYMRPVFGG  512 (520)
Q Consensus       466 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~d~~~~~p~~~~  512 (520)
                            ...+|+...+..++..+.+....+++...|..|+++|+..+++.+++
T Consensus       496 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (575)
T KOG1965|consen  496 LQLRQAELFDEPTRSSDSRFLLSLGFFQLTYTSLTHLYGRIFSRTSMRHIFGQ  548 (575)
T ss_pred             hhhhhhhhccccCCccCccccccccceeeeecccccccccccCcchhcccccc
Confidence                  11223333334556667777778889999999999999999999998

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=100.00  E-value=2.3e-72  Score=601.94  Aligned_cols=457  Identities=29%  Similarity=0.456  Sum_probs=386.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHH
Q 010004           20 ISLFVAILCLCLIVGHLLEE-NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKK   98 (520)
Q Consensus        20 l~~~~~lL~~~~~~~~~~~~-~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~   98 (520)
                      +.+.+++.+++.+.-|+.+| .+++|+++.++++|+++|++......   .+...+++++|+.++||||+|++|+++|+|
T Consensus        11 ~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~---~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~   87 (559)
T TIGR00840        11 FILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH---IDPPTLDSSYFFLYLLPPIVLDAGYFMPQR   87 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC---CccCCcCHHHHHHHHHHHHHHHHHhcCCHH
Confidence            45555566666666666665 34699999999999999987665432   123578999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCc-chhhhhh
Q 010004           99 QFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLG--FMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSLVF  175 (520)
Q Consensus        99 ~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~--~~~~~~~~all~GailsaTdpv~v~~il~~~~~~-~l~~ll~  175 (520)
                      .|++|+++|+.+|++|++++++++|..+|++.+..+  ..+++|.+|+++||++|||||+++++++++.+.| +++++++
T Consensus        88 ~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll~  167 (559)
T TIGR00840        88 NFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIF  167 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhhee
Confidence            999999999999999999999999999887655332  2368999999999999999999999999999977 7999999


Q ss_pred             hhhhchhHHHHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 010004          176 GEGVVNDATSVVLFNAVQKIDV---RELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMV  252 (520)
Q Consensus       176 gEs~lND~~aivlf~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l  252 (520)
                      |||++||++|+++|.++.++..   ++.+..++...+..++...+||+++|+++|++.++++|+..   +.+..|..+++
T Consensus       168 gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~---~~~~~e~~l~l  244 (559)
T TIGR00840       168 GESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTH---HIRQIEPLFVF  244 (559)
T ss_pred             hhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhHHHHHH
Confidence            9999999999999999888764   22333445556677888888999999999999999999873   34467899999


Q ss_pred             HHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhh-hhhhhcccc
Q 010004          253 LMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDI-EKWRMSKLS  331 (520)
Q Consensus       253 ~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~-~~w~~~~~~  331 (520)
                      +++|++|.+||.+|+||++|+++||++++||.+.|.+++++...+++|+++++++|+++|+++|+++... ..|+     
T Consensus       245 ~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~-----  319 (559)
T TIGR00840       245 LISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWN-----  319 (559)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH-----
Confidence            9999999999999999999999999999999999999999999999999999999999999999987543 2332     


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchh
Q 010004          332 FVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSA  411 (520)
Q Consensus       332 ~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~  411 (520)
                          +...++.+++++++|++++++++++.|..+   ..++++|||++++|+| +||++++++|+...    ....+.++
T Consensus       320 ----~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~---~~~~~~~e~~il~w~G-lRGaVa~aLAl~l~----~~~~~~~~  387 (559)
T TIGR00840       320 ----WAFVVATLSFCVIYRVLGVRTLSWITNEFR---PVEIPYKDQLVIFYAG-LRGAVAFALALLLD----EKIFPYKF  387 (559)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCChhhhhheeeec-cccHHHHHHHHhCC----CCCcchHH
Confidence                233345566789999999999999888765   4689999999999999 59999999998642    23457899


Q ss_pred             hHHHHHHHHHHHHHhhhhhchHHHHHHhCCCCCCCCCCCCCCCCCCCccCCCCcccCC----cccccccccccccccccc
Q 010004          412 TMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFD----ESTATNLLRAKDSLSMLL  487 (520)
Q Consensus       412 ~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  487 (520)
                      .++++|+.+|++|+++||.+++|++++++.+++++.+      ++.+|++|.+.+||.    ||.+|+            
T Consensus       388 ~i~~~t~~VVl~TvlvqG~T~~pl~~~L~l~~~~~~~------~~~~e~~~~~~~~~~~~~ie~~~g~------------  449 (559)
T TIGR00840       388 LFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCISK------TKINEELHDREFDHLLPGIEDICGQ------------  449 (559)
T ss_pred             HHHHHHHeeehHHHHHHHhhHHHHHHHhCCCCCccch------hhHHHHHHHHHHHHHHhHHHHHhhh------------
Confidence            9999999999999999999999999999997654432      233478888888874    888875            


Q ss_pred             cCCchhhhhHHhhhhccccccccCCCCCCCC
Q 010004          488 DRPVYTIHSFWRRFDDTYMRPVFGGPDSNQS  518 (520)
Q Consensus       488 ~~~~~~~~~~w~~~d~~~~~p~~~~~~~~~~  518 (520)
                       .+|+|.++.|++||+||+||++.++..+.+
T Consensus       450 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  479 (559)
T TIGR00840       450 -IGHDRAIDKLNGFDIKYLLKPLIRRNSPKS  479 (559)
T ss_pred             -cchHHHHHHHHHHhhhhChHhhcCCccccc
Confidence             467999999999999999999999666654

This model is specific for the eukaryotic members members of this family.

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-74  Score=589.08  Aligned_cols=450  Identities=29%  Similarity=0.534  Sum_probs=393.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHH
Q 010004           20 ISLFVAILCLCLIVGHLLEE-NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKK   98 (520)
Q Consensus        20 l~~~~~lL~~~~~~~~~~~~-~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~   98 (520)
                      +.+.+++..++.+.-|+..+ ++.+||+++++++|+++|.+++......   ...++++.||.++||||+++|||.|+.|
T Consensus        44 i~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~---~~~L~s~vFFlyLLPPIvlDAGYfMp~r  120 (670)
T KOG1966|consen   44 ITLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIA---PFFLESDVFFLYLLPPIVLDAGYFMPNR  120 (670)
T ss_pred             hHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccc---cccccccchhhhhcCHHHhcccccCccH
Confidence            55555666777777777766 4459999999999999999888664332   2456899999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CcHHHHHHhhhhcccccHHHHHHhhhcCCCc-chhhhhh
Q 010004           99 QFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMG--LSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSLVF  175 (520)
Q Consensus        99 ~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~--~~~~~all~GailsaTdpv~v~~il~~~~~~-~l~~ll~  175 (520)
                      .|+.|+++|+++|++||+++++.+|...|.+ ...|+.+  .+..+-|+||+++||.|||+|+++++|.++. -|+.+++
T Consensus       121 ~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i-~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~VF  199 (670)
T KOG1966|consen  121 AFFENLGTILLFAVVGTIWNAFTIGASLYAI-SLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIVF  199 (670)
T ss_pred             HHHhccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEEeeee
Confidence            9999999999999999999999998877654 3333323  7799999999999999999999999999755 6999999


Q ss_pred             hhhhchhHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 010004          176 GEGVVNDATSVVLFNAVQKIDVR---ELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMV  252 (520)
Q Consensus       176 gEs~lND~~aivlf~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l  252 (520)
                      |||++|||+.+|||+.+.++..-   +....+....+.+|+...+||+++|+++|++.++.+|++   ++.+..|+.+.+
T Consensus       200 GESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft---~~vrviePvfif  276 (670)
T KOG1966|consen  200 GESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFT---KHVRVLEPVFIF  276 (670)
T ss_pred             hhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhh---cceeeecchhhh
Confidence            99999999999999999888553   344445556688899999999999999999999999987   567788999999


Q ss_pred             HHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhh-hhhhcccc
Q 010004          253 LMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIE-KWRMSKLS  331 (520)
Q Consensus       253 ~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~-~w~~~~~~  331 (520)
                      .++|++|+.||.+|+|||+|+.+||+.|++|...|+++++..+.+++.++++...|+++|+++|+++.+.. +||     
T Consensus       277 ~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd-----  351 (670)
T KOG1966|consen  277 LLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWD-----  351 (670)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceee-----
Confidence            99999999999999999999999999999999999999999999999999999999999999999997653 455     


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchh
Q 010004          332 FVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSA  411 (520)
Q Consensus       332 ~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~  411 (520)
                          +.++++.++.|++.|+++++.+++++|.+|   -.+++.++|++|+++|| |||++++|....    +....|.++
T Consensus       352 ----~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr---~~k~~~~DQfimsyGGL-RGAiaF~LV~li----d~~~vp~K~  419 (670)
T KOG1966|consen  352 ----FAFICLTLVFCLIYRAIGVVVLTWFLNKFR---MVKLEFVDQFIMSYGGL-RGAIAFGLVVLI----DGAKVPAKN  419 (670)
T ss_pred             ----hhhhhhHHHHHHHHHHHHhhhhhhhhhhhh---eeeccccceeeeecCCc-chhhheeEEEEe----ccccCCccc
Confidence                345667788999999999999999999887   46999999999999998 999999998865    224678999


Q ss_pred             hHHHHHHHHHHHHHhhhhhchHHHHHHhCCCCCCCCCCCCCCCCCCCccCCCCcccCC----cccccccccccccccccc
Q 010004          412 TMITATIIIVLFTTLVFGFLTRPLVKYLLPHPQHATNNSCREPKSPNEDMNLPLLSFD----ESTATNLLRAKDSLSMLL  487 (520)
Q Consensus       412 ~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  487 (520)
                      +++++|++||+||+++||+|++|+.++|+.++++..+      ++.+|++|.+.+||.    ||++|+            
T Consensus       420 ~Fvttti~VIfFTVflQGiTIkplvk~L~Vk~~~~~~------~~m~e~i~~~~~dhlm~gIEDi~G~------------  481 (670)
T KOG1966|consen  420 MFVTTTIAVIFFTVFLQGITIKPLVKFLKVKRKNKRD------PTMNEEIYNRLLDHLMAGIEDIAGQ------------  481 (670)
T ss_pred             ceEeeeeEEEeeeeeecccchHHHHHHHccccccccC------chhhHHHHHHHHHHHHHHHHHHhcc------------
Confidence            9999999999999999999999999999998765443      245688999999984    888886            


Q ss_pred             cCCchhhhhHHhhhhccccccccCC
Q 010004          488 DRPVYTIHSFWRRFDDTYMRPVFGG  512 (520)
Q Consensus       488 ~~~~~~~~~~w~~~d~~~~~p~~~~  512 (520)
                       ++|++.++.|++||+||+||++.+
T Consensus       482 -~gh~~~rdk~~~fn~kylrp~L~r  505 (670)
T KOG1966|consen  482 -KGHYYWRDKFERFNNKYLRPLLMR  505 (670)
T ss_pred             -cccchhhhhHHHHHhhhchHHHhh
Confidence             478999999999999999998876

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=100.00  E-value=3.4e-53  Score=454.53  Aligned_cols=392  Identities=22%  Similarity=0.369  Sum_probs=315.7

Q ss_pred             HHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHH
Q 010004           33 VGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGV  112 (520)
Q Consensus        33 ~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~  112 (520)
                      ....+.++.++|.+++++++|+++|+....       ....++++.++.++||+++|++|+++|++++|||+++++.+++
T Consensus        12 ~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~-------~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~   84 (525)
T TIGR00831        12 AVAVTVKFIRLPYPIALILAGLLLGLAGLL-------PEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAF   84 (525)
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHhcccc-------CCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            334444445699999999999999974321       1246789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCc-chhhhhhhhhhchhHHHHHHHHH
Q 010004          113 IGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSLVFGEGVVNDATSVVLFNA  191 (520)
Q Consensus       113 ~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~-~l~~ll~gEs~lND~~aivlf~~  191 (520)
                      +++++++++++..++++.      ++||..|+++||++|||||+++.+++++.+.| |+.++++|||++||++++++|.+
T Consensus        85 ~~vlit~~~v~~~~~~~~------~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~alvlf~~  158 (525)
T TIGR00831        85 LLVVVTTVVVGFSLNWIL------GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVFAI  158 (525)
T ss_pred             HHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchHHHHHHHH
Confidence            999999999998888754      89999999999999999999999999999988 79999999999999999999998


Q ss_pred             HHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhH
Q 010004          192 VQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGIL  271 (520)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgil  271 (520)
                      ...+..++. ..+....+..|++.+++|+++|+++|++..++.|+.   .+.+..+..++++++|++|.+||.+|.||++
T Consensus       159 ~~~~~~~~~-~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~---~~~~~~~~~l~l~~~~~~y~lAe~lg~Sgil  234 (525)
T TIGR00831       159 AVAVALGKG-VFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK---IDDPLVEIALTILAPFAGFLLAERFHFSGVI  234 (525)
T ss_pred             HHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            887764311 123445677888899999999999999998887653   3456678899999999999999999999999


Q ss_pred             HHHHHHhhhcccccc-cCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhh--hhhhccccch-hHH---HHHHHHHH
Q 010004          272 TVFFCGIFMSHYAWH-NMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIE--KWRMSKLSFV-TSL---GVYSALIL  344 (520)
Q Consensus       272 av~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~--~w~~~~~~~~-~~~---~~~~~~~~  344 (520)
                      |+++||++++|+..+ +.+++.+...+++|+.+++++|+++|+++|++++...  .|........ ..+   ....+++.
T Consensus       235 Avv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  314 (525)
T TIGR00831       235 AVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYP  314 (525)
T ss_pred             HHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999999998866 6777788888999999999999999999999997532  2321100000 001   11223333


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhcc-CCCCCCcchhhHHHHHHHHHHH
Q 010004          345 MILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTY-SGVTSDPDSATMITATIIIVLF  423 (520)
Q Consensus       345 ~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~-~~~~~~~~~~~i~~~t~~vVl~  423 (520)
                      .+...|++.++.  ...+...++.+.+.+||++++++|+| |||++++++|+..+.. .+..+.|.++.+...++.+|++
T Consensus       315 ~~~~~r~~~~~~--~~~~~~~~~~~~~~~~r~~~v~~w~G-~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~  391 (525)
T TIGR00831       315 VMTYVRFLWTMK--PFSNRFLKKKPMEFGTRWKHVVSWAG-LRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVILF  391 (525)
T ss_pred             HHHHHHHHHHHH--HHHHHHhhcccCCCChhhHHHheecc-chHHHHHHHHHHccccccCCCCCchHHHHHHHHHHHHHH
Confidence            455677655433  33343333344678999999999999 5999999999876532 2224578899999999999999


Q ss_pred             HHhhhhhchHHHHHHhCCCCC
Q 010004          424 TTLVFGFLTRPLVKYLLPHPQ  444 (520)
Q Consensus       424 T~~v~g~~~~~l~~~l~~~~~  444 (520)
                      |+++||.++||++|+++..++
T Consensus       392 TllvqG~tlp~l~r~l~~~~~  412 (525)
T TIGR00831       392 SLLVQGISLPIFVKRKFVSEH  412 (525)
T ss_pred             HHHHHHhhHHHHHHhcCCCCC
Confidence            999999999999999987643

This model is specific for the bacterial members of this family.

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.6e-51  Score=427.38  Aligned_cols=398  Identities=26%  Similarity=0.380  Sum_probs=332.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHH
Q 010004           21 SLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQF  100 (520)
Q Consensus        21 ~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f  100 (520)
                      +....++.++...+.+.+|. .+|+....++.|++.|+......+    ....+++|.|..+++||++|++|+++|++++
T Consensus         9 ~~~~lil~l~~~~~~~~~~l-~~~~i~~~ll~g~i~g~~~l~~~~----~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l   83 (429)
T COG0025           9 FLLLLILLLGLLVSVLAGRL-LLPEIPLLLLLGLLGGPPGLNLIS----PDLELDPELFLVLFLAILLFAGGLELDLREL   83 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhhhhhcccc----ccccCChHHHHHHHHHHHHHHhHhcCCHHHH
Confidence            33334445555556666654 499999999999999975553321    1245688899999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCc-chhhhhhhhhh
Q 010004          101 FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSLVFGEGV  179 (520)
Q Consensus       101 ~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~-~l~~ll~gEs~  179 (520)
                      ||+++++..+++++++++++.+|...|+++|     ++++..|+++||++|||||+++.+++++.+.| |+.++++|||+
T Consensus        84 ~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~iL~gESl  158 (429)
T COG0025          84 RRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESL  158 (429)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999976     89999999999999999999999999999988 79999999999


Q ss_pred             chhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHH
Q 010004          180 VNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKH-SSVREIALMVLMAYLS  258 (520)
Q Consensus       180 lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~-~~~~e~~l~l~~~~~~  258 (520)
                      +||++++++|....+...++.+. +..+....+++...+|+++|++.|++..++.|+...++. ++..+..+++..++.+
T Consensus       159 ~ND~~giv~f~~~l~~~~~~~~~-~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~  237 (429)
T COG0025         159 LNDGVGIVLFKVALAALLGTGAF-SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAA  237 (429)
T ss_pred             hhhHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence            99999999999888876542221 145678999999999999999999999999999864221 3456789999999999


Q ss_pred             HHHHHhhhcchhHHHHHHHhhhcccccccCcc-chhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccchhHHH
Q 010004          259 YILAELLELSGILTVFFCGIFMSHYAWHNMTD-SSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLG  337 (520)
Q Consensus       259 ~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~~~~~  337 (520)
                      |.+||.+|.||++|++++|++.+++...+.+. +.+.+.+++|+.+++++|.++|+++|++++....+..       .+.
T Consensus       238 ~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-------~~~  310 (429)
T COG0025         238 YLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-------GLL  310 (429)
T ss_pred             HHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-------hHH
Confidence            99999999999999999999998555555555 4488889999999999999999999999975442211       144


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhHHHHH
Q 010004          338 VYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITAT  417 (520)
Q Consensus       338 ~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i~~~t  417 (520)
                      ..+++..+++++|++++++..+..+   ++.++..++|++++++|+| |||++++++|+..+.....   +.++.+...+
T Consensus       311 ~~l~~~~~~~v~R~~~V~~~~~~~~---~~~~~~~~~~~~~~l~w~G-~RG~vsla~al~~p~~~~~---~~~~~i~~i~  383 (429)
T COG0025         311 GLLVALVAVLLARPLWVFLSLKGSN---LKLRDPLPWRERLFLSWAG-PRGVVSLALALLIPLELPG---PARELILFIV  383 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc---ccccCCCCHHHHHHHhhcc-cccHHHHHHHHHchhhccc---hhhhHHHHHH
Confidence            5566677889999999999887654   1223578999999999999 7999999999986532221   6689999999


Q ss_pred             HHHHHHHHhhhhhchHHHHHHhCCCC
Q 010004          418 IIIVLFTTLVFGFLTRPLVKYLLPHP  443 (520)
Q Consensus       418 ~~vVl~T~~v~g~~~~~l~~~l~~~~  443 (520)
                      ..+|++|+++||.++|++.+++...+
T Consensus       384 ~~vIl~Sl~v~g~t~~~l~~~~~~~~  409 (429)
T COG0025         384 FLVILFSLLVQGLTLPPLAKKLEVSE  409 (429)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhccCc
Confidence            99999999999999999999988743

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=100.00  E-value=2.3e-45  Score=395.32  Aligned_cols=396  Identities=17%  Similarity=0.183  Sum_probs=303.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhH---HHHHhhHHHHHhhhh
Q 010004           17 VVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEEL---FFIYLLPPIIFNAGF   93 (520)
Q Consensus        17 ~~~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~---f~~~~L~~IlF~aG~   93 (520)
                      .+.++++.+++++..+++.+++++.++|+++.++++|+++||......+..  . ...+..+   +.++.|++++|.+|+
T Consensus        12 ~l~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~--~-~g~~d~i~leIteIvL~I~LFa~Gl   88 (810)
T TIGR00844        12 HVAYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPL--S-WGNTDSITLEISRILLCLQVFAVSV   88 (810)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChh--h-cccchHHHHHHHHHHHHHHHHHHHH
Confidence            356667777888888899999977889999999999999999755322111  1 0111112   678999999999999


Q ss_pred             cCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhc---CCCc-c
Q 010004           94 QVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQ---DETP-L  169 (520)
Q Consensus        94 ~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~---~~~~-~  169 (520)
                      ++++++++++|+.+..++++++.++++++++++|++++     +++|..|+++|||++||||+++.++++.   .+.| +
T Consensus        89 ~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-----GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~r  163 (810)
T TIGR00844        89 ELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-----GLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGH  163 (810)
T ss_pred             hCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChH
Confidence            99999999999999999999999999999999998865     8999999999999999999999999983   3566 7


Q ss_pred             hhhhhhhhhhchhHHHHHHHHHHHHHHhh-ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ch
Q 010004          170 LYSLVFGEGVVNDATSVVLFNAVQKIDVR-ELN-GKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHS--SV  245 (520)
Q Consensus       170 l~~ll~gEs~lND~~aivlf~~~~~~~~~-~~~-~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~--~~  245 (520)
                      ++.++.+||++||++|++++.+...+... +.. .....+.+..+++.+++|+++|+++|++.++++++... ++.  .+
T Consensus       164 LR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~r-r~~i~~e  242 (810)
T TIGR00844       164 LRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEG-KNIIDRE  242 (810)
T ss_pred             HHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccchh
Confidence            99999999999999999888766555431 111 11122357889999999999999999999999998853 332  22


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhh
Q 010004          246 REIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKW  325 (520)
Q Consensus       246 ~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w  325 (520)
                      ....+.+++++.+|.+++.+|.||++|+|+||++++|..+.    ..+.....+++.++.+++.++|+++|+.++.....
T Consensus       243 sfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~----~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~  318 (810)
T TIGR00844       243 SFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWF----AQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFN  318 (810)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccch----hhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcc
Confidence            33567788899999999999999999999999999986542    11223456999999999999999999998532110


Q ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCC--
Q 010004          326 RMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSG--  403 (520)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~--  403 (520)
                      + . ......+..+++.++++++.|+..++.+..+.       +...+|+|+++++|.| |||..++.++........  
T Consensus       319 ~-~-~l~~~~w~~ilLaL~LifVrRPpaVlll~~li-------~~~~s~rErlFigWFG-pRGIGSIyyl~~A~~~~~~~  388 (810)
T TIGR00844       319 N-G-DIGLDVWRLIILSLVVIFLRRIPAVLILKPLI-------PDIKSWREAMFIGHFG-PIGVGAVFAAILSKSQLESH  388 (810)
T ss_pred             c-c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------ccCCCHHHHHHheeec-cccHHHHHHHHHHHHhhhcc
Confidence            0 0 00011233445556677899988887644322       2356999999999999 799999987765432211  


Q ss_pred             CCC---------------CcchhhHHHHHHHHHHHHHhhhhhchHHH
Q 010004          404 VTS---------------DPDSATMITATIIIVLFTTLVFGFLTRPL  435 (520)
Q Consensus       404 ~~~---------------~~~~~~i~~~t~~vVl~T~~v~g~~~~~l  435 (520)
                      .+.               ....+.+..+|.++|+.|+++||.+++|+
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l  435 (810)
T TIGR00844       389 LTDEETPLNVTPGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVI  435 (810)
T ss_pred             cCcccccccccccccchhhhHHHHHHHHHHHHHHHHHhhccccchHH
Confidence            000               01146788999999999999999999987

This model is specific for the fungal members of this family.

>PRK05326 potassium/proton antiporter; Reviewed

Probab=100.00  E-value=8.4e-45  Score=394.71  Aligned_cols=388  Identities=21%  Similarity=0.275  Sum_probs=308.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHH
Q 010004           20 ISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQ   99 (520)
Q Consensus        20 l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~   99 (520)
                      ++.+.++++++.+.+.+.+|. ++|..++++++|+++|+......+..+.   + ..+.+.++++++++|++|+++|++.
T Consensus         8 ll~~~~ll~l~~~~~~l~~r~-~~P~ll~~il~GillGp~~lg~i~~~~~---~-~~~~i~~l~L~~iLF~~Gl~~~~~~   82 (562)
T PRK05326          8 LLIGALLLLLSILASRLSSRL-GIPSLLLFLAIGMLAGEDGLGGIQFDNY---P-LAYLVGNLALAVILFDGGLRTRWSS   82 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhCccccCCcccCcH---H-HHHHHHHHHHHHHHHcCccCCCHHH
Confidence            334445666666666666664 5999999999999999754321111110   0 1245789999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCC--Cc-chhhhhhh
Q 010004          100 FFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE--TP-LLYSLVFG  176 (520)
Q Consensus       100 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~--~~-~l~~ll~g  176 (520)
                      +|+++++++.+++.|+++++++++..+++++      +++|..|+++|+++++|||+++.+++++.+  .+ ++++++++
T Consensus        83 l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~------g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~  156 (562)
T PRK05326         83 FRPALGPALSLATLGVLITAGLTGLFAHWLL------GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEI  156 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhh
Confidence            9999999999999999999998888888877      899999999999999999999999999988  66 79999999


Q ss_pred             hhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 010004          177 EGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAY  256 (520)
Q Consensus       177 Es~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~  256 (520)
                      ||++||+++++++.++..+...+.... .+..+..++.++.+++++|++.|++..++.|+.+  ++.......+++++++
T Consensus       157 eS~~nD~~ai~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~--~~~~~~~~i~~l~~~l  233 (562)
T PRK05326        157 ESGSNDPMAVFLTITLIELITGGETGL-SWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIA--LPAEGLYPILVLAGAL  233 (562)
T ss_pred             hhhcccHHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhhHHHHHHHHHHH
Confidence            999999999999998877654432221 1234667888889999999999999999888763  2234456788899999


Q ss_pred             HHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccchhHH
Q 010004          257 LSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSL  336 (520)
Q Consensus       257 ~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~~~~  336 (520)
                      ++|.+||.+|.||++|+|++|++++|..     .+.++..+++++.++.++++++|+++|+.+.....++.       .+
T Consensus       234 ~~~~~a~~lg~Sg~la~~iaGl~l~n~~-----~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-------~~  301 (562)
T PRK05326        234 LIFALTAALGGSGFLAVYLAGLVLGNRP-----IRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-------AL  301 (562)
T ss_pred             HHHHHHHHHCCcHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HH
Confidence            9999999999999999999999999653     23455678899999999999999999999854332111       11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhHHHH
Q 010004          337 GVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITA  416 (520)
Q Consensus       337 ~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i~~~  416 (520)
                      ...++.+++++++|+++++....         ..++++||+.+++|+| +||++++++|.....    ...+..+.++.+
T Consensus       302 ~~l~i~~~l~~vaR~l~v~l~~~---------~~~~~~~e~~~i~~~g-~RG~v~i~lA~~~~~----~~~~~~~~~~~~  367 (562)
T PRK05326        302 PALLLALFLILVARPLAVFLSLL---------PFRFNLREKLFISWVG-LRGAVPIVLATFPMM----AGLPNAQLIFNV  367 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc---------cCCCCHhhhheeeeec-chhHHHHHHHHHHHH----cCCCchhhhhhh
Confidence            12223344678999999886543         2478999999999999 699999999986532    223556788899


Q ss_pred             HHHHHHHHHhhhhhchHHHHHHhCCCCCCCC
Q 010004          417 TIIIVLFTTLVFGFLTRPLVKYLLPHPQHAT  447 (520)
Q Consensus       417 t~~vVl~T~~v~g~~~~~l~~~l~~~~~~~~  447 (520)
                      ++.+|++|+++||.+++|+.|+++..++++.
T Consensus       368 ~~~vvl~S~~i~g~tl~~~a~~l~l~~~~~~  398 (562)
T PRK05326        368 VFFVVLVSLLLQGTTLPWAARKLGVVVPPEA  398 (562)
T ss_pred             hheeeHHHHHHHHhhHHHHHHHcCCCCCCCC
Confidence            9999999999999999999999988765543

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.6e-43  Score=345.40  Aligned_cols=383  Identities=21%  Similarity=0.272  Sum_probs=318.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccCh----hHHHHHhhHHHHHhhhhc
Q 010004           19 PISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDE----ELFFIYLLPPIIFNAGFQ   94 (520)
Q Consensus        19 ~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~----~~f~~~~L~~IlF~aG~~   94 (520)
                      .+++...++....++...+..+..+|-.+..+.+|++.|.-....        .++|.    ...-+++|.+|+|++|+.
T Consensus         7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~--------I~fdNy~~Ay~vg~lALaiILfdgG~~   78 (574)
T COG3263           7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGG--------IEFDNYPFAYMVGNLALAIILFDGGFG   78 (574)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccc--------cccCccHHHHHHHHHHHHHHhhcCccC
Confidence            344444344444444544444456999999999999999422211        22332    235578899999999999


Q ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCc-chhhh
Q 010004           95 VKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP-LLYSL  173 (520)
Q Consensus        95 l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~-~l~~l  173 (520)
                      .+++.||...++.+.+|.+|+++++.++|..++|++      +++|.+++++||++.+||.++|.+++++.+.+ |+.+.
T Consensus        79 T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll------~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~st  152 (574)
T COG3263          79 TQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLL------NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVAST  152 (574)
T ss_pred             CcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhhhh
Confidence            999999999999999999999999999999999998      99999999999999999999999999988855 89999


Q ss_pred             hhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 010004          174 VFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVL  253 (520)
Q Consensus       174 l~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~  253 (520)
                      ++-||.-||.+|++|.-.+..+..++.++.++...+. |++++..|+++|+..|++..++.+|...   +....+.+.++
T Consensus       153 LEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~-f~~q~glG~l~G~~gg~l~~~~Inr~nL---d~GL~pil~la  228 (574)
T COG3263         153 LEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLG-FLQQFGLGLLLGLGGGKLLLQLINRINL---DSGLYPILALA  228 (574)
T ss_pred             EEeecCCCCceeeehhHHHHHHHhccccccCHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHhhcc---ccchhHHHHHH
Confidence            9999999999999999888888766544344444444 9999999999999999999999998842   34566889999


Q ss_pred             HHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccch
Q 010004          254 MAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFV  333 (520)
Q Consensus       254 ~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~  333 (520)
                      ..++.|.+++.+|.||++|++.||+..+     |.+-+.|+.+.++++-+++++....|..+|+...+.+.|...     
T Consensus       229 ~~Ll~fs~t~aiGGsG~LaVYl~Gll~G-----N~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~ia-----  298 (574)
T COG3263         229 GGLLIFSLTGAIGGSGILAVYLAGLLLG-----NRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIA-----  298 (574)
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHhC-----CCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhh-----
Confidence            9999999999999999999999999999     555677888999999999999999999999999888877643     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhH
Q 010004          334 TSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATM  413 (520)
Q Consensus       334 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i  413 (520)
                        +..+++.+..++++|++.||....         +.+++++|+.+++|.|+ |||+++.+|..+.. .   ..+..+.+
T Consensus       299 --vPailL~l~mifvaRP~aV~l~l~---------Pfrf~~~Ek~fvSWvGL-RGAv~IilAifpm~-a---glena~l~  362 (574)
T COG3263         299 --IPAILLSLWMIFVARPLAVFLGLI---------PFRFNRREKLFVSWVGL-RGAVPIILAIFPMM-A---GLENARLF  362 (574)
T ss_pred             --HHHHHHHHHHHHHHhHHHHHHhhc---------ccccCccchheeehhhc-ccchhhhHhhhHHh-c---CCccceEE
Confidence              444555667889999999986331         23689999999999998 99999999987654 2   34677889


Q ss_pred             HHHHHHHHHHHHhhhhhchHHHHHHhCCCCCC
Q 010004          414 ITATIIIVLFTTLVFGFLTRPLVKYLLPHPQH  445 (520)
Q Consensus       414 ~~~t~~vVl~T~~v~g~~~~~l~~~l~~~~~~  445 (520)
                      +...+.+|++|.++||.+.++..++++...++
T Consensus       363 FNvAF~VVLvSlliQG~tl~~~a~~l~~i~p~  394 (574)
T COG3263         363 FNVAFFVVLVSLLIQGSTLPWAAKKLKVIVPP  394 (574)
T ss_pred             eehhHHHHHHHHHHccCcchHHHHhcccccCC
Confidence            99999999999999999999999999876554

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-33  Score=270.67  Aligned_cols=388  Identities=16%  Similarity=0.174  Sum_probs=290.7

Q ss_pred             HHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHH
Q 010004           27 LCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLT  106 (520)
Q Consensus        27 L~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~  106 (520)
                      ..+-.+.+.++|++..+.|.....+.|+++||......+...-..-+.-..-+..+.|.+..|.++.|++.+++.++|++
T Consensus        22 ~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~S  101 (467)
T KOG4505|consen   22 VSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRS  101 (467)
T ss_pred             HHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHH
Confidence            33334578888888889999999999999999877554332211001111236789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcC----CCc-chhhhhhhhhhch
Q 010004          107 IMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQD----ETP-LLYSLVFGEGVVN  181 (520)
Q Consensus       107 il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~----~~~-~l~~ll~gEs~lN  181 (520)
                      +..+-.+.+++.+++.+..+|.++|     ++++..+++++++++||||+...++..+.    ++| |+++++.+||+.|
T Consensus       102 i~vlllpVmi~gwlvs~~fvy~l~p-----~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcN  176 (467)
T KOG4505|consen  102 IFVLLLPVMIIGWLVSFGFVYALIP-----NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCN  176 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCC
Confidence            9999999999999999888898887     89999999999999999999999999853    367 8999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH--HHHHHHHHHH
Q 010004          182 DATSVVLFNAVQKIDVRELN-GKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREI--ALMVLMAYLS  258 (520)
Q Consensus       182 D~~aivlf~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~--~l~l~~~~~~  258 (520)
                      |++|+.++-....+...... ...--+.....++....|+++|.++|++....+|+.+. ++-.+.|.  .+-+.+++++
T Consensus       177 DGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aek-krlid~eSfl~~~vvl~lfc  255 (467)
T KOG4505|consen  177 DGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEK-KRLIDRESFLIFYVVLALFC  255 (467)
T ss_pred             CCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHH
Confidence            99999877655555332111 11112356788999999999999999999999999875 44556665  4556778888


Q ss_pred             HHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhh-hhhhccccchhHHH
Q 010004          259 YILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIE-KWRMSKLSFVTSLG  337 (520)
Q Consensus       259 ~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~-~w~~~~~~~~~~~~  337 (520)
                      ..+.+.+|.+.++..|++|+++++..|...  +  ....+..+.++.+++..+|+|.|..++..+ +|.    ..+..+|
T Consensus       256 ~gigtiiGvddLl~sFfAGi~Fswd~wFsk--~--t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s----~~gl~vw  327 (467)
T KOG4505|consen  256 MGIGTIIGVDDLLVSFFAGIVFSWDEWFSK--K--TKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLS----VEGLPVW  327 (467)
T ss_pred             hhhhheechhHHHHHHHhhhhcchhHHhhh--h--hhhccHHHHHHHHHHHHHHHHhccccchhhcCCc----ccCchHH
Confidence            899999999999999999999998876522  1  222456778888999999999999996433 222    1223344


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhcc---CC-CCCC-----
Q 010004          338 VYSAL-ILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTY---SG-VTSD-----  407 (520)
Q Consensus       338 ~~~~~-~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~---~~-~~~~-----  407 (520)
                      ..+++ +..+++-|.-.|+..-+.       -++-.+|||++++||.| |.|..|+..|+..-..   .. ....     
T Consensus       328 rlvilsi~iif~RRip~v~l~kp~-------iPdikswkEALFvGhFG-PIGVgAly~allar~~le~~ep~~~i~~~e~  399 (467)
T KOG4505|consen  328 RLVILSITIIFIRRIPAVYLMKPL-------IPDIKSWKEALFVGHFG-PIGVGALYYALLARKELETLEPEKSIYESET  399 (467)
T ss_pred             HHHHHHHHHHHhcccceEEEeccC-------CcchhhHHHHHHhccCC-CccHHHHHHHHHHHhhhccCCcccccCCccc
Confidence            33333 334445555444442222       24567999999999999 9999999888753110   00 0011     


Q ss_pred             ---cchhhHHHHHHHHHHHHHhhhhhchHHHH
Q 010004          408 ---PDSATMITATIIIVLFTTLVFGFLTRPLV  436 (520)
Q Consensus       408 ---~~~~~i~~~t~~vVl~T~~v~g~~~~~l~  436 (520)
                         ...+.+...+..+|+.|+++||.+++.+.
T Consensus       400 ~~w~li~~iwpivsf~vlsSIiVHG~sv~~~t  431 (467)
T KOG4505|consen  400 VFWTLIEIIWPIVSFTVLSSIIVHGSSVAMYT  431 (467)
T ss_pred             cchhhhhhhhhhhHHHHHHHHHhccchhhHHH
Confidence               12355788888999999999999998653

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=100.00  E-value=1.5e-35  Score=308.63  Aligned_cols=371  Identities=25%  Similarity=0.345  Sum_probs=77.6

Q ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHH
Q 010004           30 CLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMM  109 (520)
Q Consensus        30 ~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~  109 (520)
                      +.+.+.+++|. ++|+.++++++|+++|+......+..     ..+.+.+.++++++++|++|+|+|.+++||++++.+.
T Consensus         8 ~~~~~~l~~r~-~iP~~i~~i~~Gi~lg~~~~~~~~~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~   81 (380)
T PF00999_consen    8 AFVAGILFRRL-GIPSIIGYILVGIVLGPSGLGLLEPD-----NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA   81 (380)
T ss_dssp             ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred             HHHHHHHHHHh-CCCHHHHHHHheeehhhhhhhhccch-----hhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence            44445555554 49999999999999999766422211     1233558899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcC-CCc-chhhhhhhhhhchhHHHHH
Q 010004          110 FGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQD-ETP-LLYSLVFGEGVVNDATSVV  187 (520)
Q Consensus       110 la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~-~~~-~l~~ll~gEs~lND~~aiv  187 (520)
                      .++.++++++..++..+++++   ...++++.+++++|+++++|||+.+.++++|. +.+ ++++++.+|+++||.++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~  158 (380)
T PF00999_consen   82 LGLVGFLLPFILVGFLLSFFL---FILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAII  158 (380)
T ss_dssp             -----------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTT
T ss_pred             cccceeeehhhHHHHHHHHhh---ccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhh
Confidence            999999999888677666421   00189999999999999999999999999664 445 7999999999999999999


Q ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhc
Q 010004          188 LFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLEL  267 (520)
Q Consensus       188 lf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~  267 (520)
                      ++.++...... ....+..+....++.....+.++|...+++..+..|+.   ++.++.+..++++.++..|+++|.+|.
T Consensus       159 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g~  234 (380)
T PF00999_consen  159 LLSILISLAQA-SGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILGL  234 (380)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             hhhhhhhhhcc-cccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhccccccccc
Confidence            99988777522 12233444555555555555555555555554444432   245567788999999999999999999


Q ss_pred             chhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccchhHHHHHHHHHHHHH
Q 010004          268 SGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMIL  347 (520)
Q Consensus       268 Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~  347 (520)
                      |++++++++|+++++...++   +-+++.+++++   .++.+++|+++|+++......+     ....++...+.++.++
T Consensus       235 s~~l~af~~Gl~~~~~~~~~---~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~-----~~~~~~~~~~~~~~~~  303 (380)
T PF00999_consen  235 SGILGAFIAGLILSNSPFAE---RLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFN-----SPSVIILVLLLLIAIL  303 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccceeeeeehccccccccc---hhhhcccchhh---HHHhhHHhhhhccccccccccc-----chhhhhhHHHHHHHHH
Confidence            99999999999999443221   12222333332   8899999999999995321100     1122344455555667


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhHHHHHHHHHHHHHhh
Q 010004          348 LGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIIIVLFTTLV  427 (520)
Q Consensus       348 v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i~~~t~~vVl~T~~v  427 (520)
                      ++|.++++..++.         .+.++|++..+++++.|||+++++++......     ....+.+.+.++.++++|+++
T Consensus       304 ~~k~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~-----~~~~~~~~~~~~~~vl~t~ii  369 (380)
T PF00999_consen  304 LGKFIGVYLASRL---------FGIPWKEALFIGLGMLPRGEVSLALALIALNL-----GIISEQMFTIIIAAVLLTIII  369 (380)
T ss_dssp             ----------------------------HHHHTTTTSS--HHHHHHHHHHHHH---------------------------
T ss_pred             Hhhhceeehhhhh---------cccccchhHHHHHhhcCccHHHHHHHHHHHhc-----CCCCHHHHHHheeeeeeHHHH
Confidence            8999988875543         37899999999999988999999999876432     122334488888999999999


Q ss_pred             hhhchHHHHHH
Q 010004          428 FGFLTRPLVKY  438 (520)
Q Consensus       428 ~g~~~~~l~~~  438 (520)
                      +|.+.+|+++|
T Consensus       370 ~~~~~~~l~~~  380 (380)
T PF00999_consen  370 AGIILSPLLRK  380 (380)
T ss_dssp             -----------
T ss_pred             HHHHHHHHhcC
Confidence            99999999876

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=99.96  E-value=5e-26  Score=236.29  Aligned_cols=378  Identities=21%  Similarity=0.211  Sum_probs=260.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHH
Q 010004           19 PISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKK   98 (520)
Q Consensus        19 ~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~   98 (520)
                      .+..+.+++.++.+.+++++|.+ +|..+++++.|+++||....... ++++    .-+.+.++.+..++|.+|+|.|.+
T Consensus         7 ~l~~~~iiL~~a~i~~~l~~rl~-lp~vlg~llaGiilGp~~~~~~~-~~~~----~i~~laelGvi~LlF~~GLE~~~~   80 (397)
T COG0475           7 ILLQLLILLLVAVILGPLFKRLG-LPPVLGYLLAGIILGPWGLLLII-ESSE----IIELLAELGVVFLLFLIGLEFDLE   80 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHhcCcccccccC-CchH----HHHHHHHHhHHHHHHHHHHCcCHH
Confidence            34555667788888888888765 99999999999999982221111 1111    112367899999999999999999


Q ss_pred             HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCC-Cc-chhhhhh
Q 010004           99 QFFHNFLT-IMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE-TP-LLYSLVF  175 (520)
Q Consensus        99 ~f~~~~~~-il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~-~~-~l~~ll~  175 (520)
                      ++||+.++ ....+..+....+.+.....+..+      ++++..++++|++++.||...+.++++|.+ .+ +..+++.
T Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l  154 (397)
T COG0475          81 RLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL------GLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLIL  154 (397)
T ss_pred             HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHh------ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            99999999 666666666555433322222124      899999999999999999999999999976 33 7999999


Q ss_pred             hhhhchhHHHHHHHHHHHHHHhhccchhh-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCchhHHHHHHH
Q 010004          176 GEGVVNDATSVVLFNAVQKIDVRELNGKA-ALRIFRDFLYLFSTSTILGVTAG-LLTALVLKTLYFGKHSSVREIALMVL  253 (520)
Q Consensus       176 gEs~lND~~aivlf~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~s~~~G~~~G-~~~~~l~~~~~~~~~~~~~e~~l~l~  253 (520)
                      +..+++|..+++++.++..+..++..... +...+.......    ++-...| ++..++.|+... .+.++.....++.
T Consensus       155 ~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~----~~~l~~g~~l~~~~~r~~~~-~~~~e~~~~~~l~  229 (397)
T COG0475         155 GALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFL----ALLLLLGRYLLPPLFRRVAK-TESSELFILFVLL  229 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHH
Confidence            99999999999999988887654322211 222222221111    1112223 566666666642 2456677888999


Q ss_pred             HHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHH-HHhHHHHHHhccchhhhhhhhhccccc
Q 010004          254 MAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSF-IAETFIFLYVGMDAFDIEKWRMSKLSF  332 (520)
Q Consensus       254 ~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~F~~~G~~i~~~~~w~~~~~~~  332 (520)
                      +++...+++|.+|+|.++++|.+|++++...++      +++.++-.+.+.. ++-++||+.+|++++....++      
T Consensus       230 i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~------~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~------  297 (397)
T COG0475         230 LVLGAAYLAELLGLSMILGAFLAGLLLSESEYR------KHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLE------  297 (397)
T ss_pred             HHHHHHHHHHHhChhHHHHHHHHHHHhcccccc------hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhc------
Confidence            999999999999999999999999999954321      1344555566666 999999999999995433221      


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhh
Q 010004          333 VTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSAT  412 (520)
Q Consensus       333 ~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~  412 (520)
                        ..........+..+.|.++++...+..         +.++|++...++..-+||..+++++-...      .....+.
T Consensus       298 --~~~~~l~~~~~~i~~K~~~~~~~~~~~---------g~~~~~~~~~g~~~~~~ge~~~v~~~~~~------~~~i~~~  360 (397)
T COG0475         298 --NLLLILLLVALAILGKILGAYLAARLL---------GFSKRLALGIGLLLRQGGEFAFVLAGIAL------GSAISEA  360 (397)
T ss_pred             --cHHHHHHHHHHHHHHHHHHHHHHHHHH---------cCcHHHHHHHHhhhhhhhHHHHHHHHhcc------cchhHHH
Confidence              122344555677899999998877654         46777787777766455566655544321      1245556


Q ss_pred             HHHHHHHHHHHHHhhhhhchHHHHHHhCCC
Q 010004          413 MITATIIIVLFTTLVFGFLTRPLVKYLLPH  442 (520)
Q Consensus       413 i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~  442 (520)
                      .++.+..+.++++.+....++++.++..++
T Consensus       361 ~~~~~v~~smi~t~i~~~~~~~~~~~~~~~  390 (397)
T COG0475         361 LLTAVVILSMITTPILPLLTPILLKRLLKK  390 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            666666666677766555566666555443

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=99.96  E-value=3.1e-26  Score=257.10  Aligned_cols=345  Identities=14%  Similarity=0.129  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccC----hhHHHHHhhHHHHHhhhhcCCHHH
Q 010004           24 VAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFD----EELFFIYLLPPIIFNAGFQVKKKQ   99 (520)
Q Consensus        24 ~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~----~~~f~~~~L~~IlF~aG~~l~~~~   99 (520)
                      .++++++.+++.+++|. ++|..++++++|+++||......+.........+    -+.+.++++.+++|.+|+|+|.+.
T Consensus        49 ~lil~~a~l~~~ll~rl-~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~  127 (832)
T PLN03159         49 TLVVVTTRLLVFILKPF-RQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISV  127 (832)
T ss_pred             HHHHHHHHHHHHHHHhc-CCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            45556666667777665 4999999999999999976643321111111111    234778999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCC--cchhhhhhhh
Q 010004          100 FFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDET--PLLYSLVFGE  177 (520)
Q Consensus       100 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~--~~l~~ll~gE  177 (520)
                      +||+.+..+..++.++++++++.....++ +...+........++++|.++|.|+..++.++++|.+.  .++.+++.+.
T Consensus       128 lr~~~k~a~~ia~~~~ilpf~lg~~~~~~-l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsa  206 (832)
T PLN03159        128 IRRTGKKALAIAIAGMALPFCIGLAFSFI-FHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSA  206 (832)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHH
Confidence            99999999999999999986654433333 32211111123457889999999999999999999873  4799999999


Q ss_pred             hhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 010004          178 GVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGV----TAGLLTALVLKTLYFGKHSSVREIALMVL  253 (520)
Q Consensus       178 s~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~----~~G~~~~~l~~~~~~~~~~~~~e~~l~l~  253 (520)
                      +++||.++++++.++..+...+......       ++.++..+++.+    ++-.+..|+.|+....+...+....++++
T Consensus       207 avv~Dl~~~ilLav~~~l~~~~~~~~~~-------l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~  279 (832)
T PLN03159        207 ALVNDMCAWILLALAIALAENDSTSLAS-------LWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILT  279 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHH
Confidence            9999999999988776654332211111       111111222222    22334444444432111223344567777


Q ss_pred             HHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccch
Q 010004          254 MAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFV  333 (520)
Q Consensus       254 ~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~  333 (520)
                      +++++.+++|.+|++.++++|++|+++.+.      +..+...+++-.....++-++||+++|+.+.....+      ..
T Consensus       280 ~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~------~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~------~~  347 (832)
T PLN03159        280 GVMISGFITDAIGTHSVFGAFVFGLVIPNG------PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ------GP  347 (832)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHhhccCCc------chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc------Cc
Confidence            788889999999999999999999999831      112222334444456788999999999998432211      11


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhh
Q 010004          334 TSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQ  398 (520)
Q Consensus       334 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~  398 (520)
                      ..+...++++++.+++|+++++..++..         ++++++++.+|....+||.++++++...
T Consensus       348 ~~~~~~~~liv~a~~gK~~g~~l~a~~~---------g~~~~eal~lG~lm~~kG~~~Lii~~ig  403 (832)
T PLN03159        348 ATWGLLVLVIIMASAGKIMGTIIIAFFY---------TMPFREGITLGFLMNTKGLVEMIVLNVG  403 (832)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            1233334445566788988887766543         7899999999999999999999887653

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=99.96  E-value=3.9e-26  Score=249.89  Aligned_cols=364  Identities=13%  Similarity=0.086  Sum_probs=253.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHH
Q 010004           19 PISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKK   98 (520)
Q Consensus        19 ~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~   98 (520)
                      .+.-..+++.++.+.+.+++|. ++|.+++++++|+++||......+  +.  .  +-+.+.++++.+++|.+|+|+|++
T Consensus         6 ~l~~~~~~l~~a~i~~~l~~rl-~lp~vlgyilaGillGP~~lg~i~--~~--~--~i~~laelGvv~LlF~iGLEl~~~   78 (621)
T PRK03562          6 TLIQALIYLGAAVLIVPIAVRL-GLGSVLGYLIAGCIIGPWGLRLVT--DV--E--SILHFAEFGVVLMLFVIGLELDPQ   78 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhCcccccCCC--CH--H--HHHHHHHHHHHHHHHHHHhCcCHH
Confidence            3444455666666777777765 499999999999999985443211  00  0  123477899999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCC-c-chhhhhhh
Q 010004           99 QFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDET-P-LLYSLVFG  176 (520)
Q Consensus        99 ~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~-~-~l~~ll~g  176 (520)
                      ++++..+.++.++...+++++.+++...+ ++      +++|..++++|++++.|+++.++++++|.+. . +..+...+
T Consensus        79 ~l~~~~~~~~~~g~~qv~~~~~~~~~~~~-~~------g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~  151 (621)
T PRK03562         79 RLWKLRRSIFGGGALQMVACGGLLGLFCM-LL------GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFA  151 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHH
Confidence            99999999999999999998776655444 44      8899999999999999999999999999873 3 68999999


Q ss_pred             hhhchhHHHHHHHHHHHHHHhhccc--hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCchhHHHHHHH
Q 010004          177 EGVVNDATSVVLFNAVQKIDVRELN--GKAALRIFRDFLYLFSTSTILGVTAG-LLTALVLKTLYFGKHSSVREIALMVL  253 (520)
Q Consensus       177 Es~lND~~aivlf~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~s~~~G~~~G-~~~~~l~~~~~~~~~~~~~e~~l~l~  253 (520)
                      -.++||..+++++.++..+...+.+  ....+..+.    ..++.+++.++.| ++..++.++... ++.++.....++.
T Consensus       152 ~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~e~~~~~~l~  226 (621)
T PRK03562        152 ILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSAL----KVAGALALVVLGGRYVTRPALRFVAR-SGLREVFTAVALF  226 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHH
Confidence            9999999999888876554332111  111111111    1222222233333 345555565532 3345555677788


Q ss_pred             HHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccch
Q 010004          254 MAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFV  333 (520)
Q Consensus       254 ~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~  333 (520)
                      +++++.+++|.+|+|..+++|++|+++++..       .++..++..+.+..++.++||+.+|+++.....+        
T Consensus       227 lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~-------~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~--------  291 (621)
T PRK03562        227 LVFGFGLLMEEVGLSMALGAFLAGVLLASSE-------YRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLL--------  291 (621)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHhcCCc-------cHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH--------
Confidence            8899999999999999999999999999532       2333444455556678899999999998432211        


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhH
Q 010004          334 TSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATM  413 (520)
Q Consensus       334 ~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i  413 (520)
                      ..++..+..+++.+++|+++++..++..         +.+++++..+|+..-+||..++.++..... .    ....+..
T Consensus       292 ~~~~~il~~~~~~~~~K~~~~~~~~~~~---------g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~-~----~~i~~~~  357 (621)
T PRK03562        292 ENPLRILILLLGFLAIKIAMLWLLARPL---------GVPRKQRRWFAVLLGQGGEFAFVVFGAAQM-A----NVLEPEW  357 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHhHHHHHHHHHhccccHHHHHHHHHHH-C----CCCCHHH
Confidence            1122223334457789999888766543         788999999999877799999888754321 1    1233455


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 010004          414 ITATIIIVLFTTLVFGF  430 (520)
Q Consensus       414 ~~~t~~vVl~T~~v~g~  430 (520)
                      ......++++|+++.+.
T Consensus       358 ~~~lv~~v~lS~~~tP~  374 (621)
T PRK03562        358 AKLLTLAVALSMAATPL  374 (621)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555677777777443

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=99.95  E-value=4.1e-25  Score=240.66  Aligned_cols=369  Identities=15%  Similarity=0.103  Sum_probs=242.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHH
Q 010004           21 SLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQF  100 (520)
Q Consensus        21 ~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f  100 (520)
                      ..+..++.++.+++++++|. ++|..++++++|+++||......+  +    ....+.+.++++.+++|.+|+|+|.+++
T Consensus         9 ~~~~~~l~~a~~~~~l~~rl-~~P~ivg~IlaGillGp~~lg~~~--~----~~~~~~la~lGli~llF~~Gle~d~~~l   81 (558)
T PRK10669          9 TTIVGGLVLAFILGMLANRL-RISPLVGYLLAGVLAGPFTPGFVA--D----TKLAPELAELGVILLMFGVGLHFSLKDL   81 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhhCcccccccc--c----hHHHHHHHHHHHHHHHHHhHhcCCHHHH
Confidence            33455566666677777765 599999999999999985443211  1    0112457889999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCC--Ccchhhhhhhhh
Q 010004          101 FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE--TPLLYSLVFGEG  178 (520)
Q Consensus       101 ~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~--~~~l~~ll~gEs  178 (520)
                      +++++.....+..+++++++ .+....+.+      ++++..++++|+++|.|+++.+.++++|.+  ..+..+++.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~  154 (558)
T PRK10669         82 MAVKSIAIPGAIAQIAVATL-LGMALSAVL------GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWL  154 (558)
T ss_pred             HHHhhHHHHHHHHHHHHHHH-HHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHH
Confidence            99877666666666666554 344444455      799999999999999999999999999987  337899999999


Q ss_pred             hchhHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 010004          179 VVNDATSVVLFNAVQKIDVREL-NGKAALRIFRDFLYLFSTS----TILGVTAGLLTALVLKTLYFGKHSSVREIALMVL  253 (520)
Q Consensus       179 ~lND~~aivlf~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~s----~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~  253 (520)
                      ++||..+++++.++..+..... ...+.........+.+...    ++..++..++..++.++... ++.++......+.
T Consensus       155 ~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~e~~~l~~l~  233 (558)
T PRK10669        155 IVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA-TGSRELFTLSVLA  233 (558)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHH
Confidence            9999999888877655432110 0011111111111111111    12233333455555555532 2223333334445


Q ss_pred             HHHHH-HHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccc
Q 010004          254 MAYLS-YILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSF  332 (520)
Q Consensus       254 ~~~~~-~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~  332 (520)
                      ++++. +..+|.+|+|.++++|++|+++++..       ..++..+-...+..++.++||+.+|+++.....|+.     
T Consensus       234 ~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~-------~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~-----  301 (558)
T PRK10669        234 LALGIAFGAVELFDVSFALGAFFAGMVLNESE-------LSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQ-----  301 (558)
T ss_pred             HHHHHHHHHHHHcCccHHHHHHHHHHHHhCCh-------hHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHH-----
Confidence            45544 34579999999999999999998421       111122112223456889999999999854433321     


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhh
Q 010004          333 VTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSAT  412 (520)
Q Consensus       333 ~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~  412 (520)
                         .......+++.+++|+++++..+...         +.++|++..+|.+..+||..++.++.....     .....+.
T Consensus       302 ---~~~~~~~~~~~~v~K~~~~~~~~~~~---------g~~~~~a~~~gl~l~~~Gef~lii~~~~~~-----~gii~~~  364 (558)
T PRK10669        302 ---PLAVLATLAIIVFGKSLAAFFLVRLF---------GHSRRTALTIAASLAQIGEFAFILAGLGMA-----LNLLPQA  364 (558)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHh---------CCChhhHHHHHHHHhcccchHHHHHHHHHh-----CCCCCHH
Confidence               12223344557789998888766543         678999999999988899999998775432     2234556


Q ss_pred             HHHHHHHHHHHHHhhhhhchH
Q 010004          413 MITATIIIVLFTTLVFGFLTR  433 (520)
Q Consensus       413 i~~~t~~vVl~T~~v~g~~~~  433 (520)
                      .+...+.++++|+++.+....
T Consensus       365 ~~~~~v~~~~~t~~~~P~l~~  385 (558)
T PRK10669        365 GQNLVLAGAILSIMLNPVLFT  385 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            666677777888888544443

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=99.95  E-value=6.8e-26  Score=225.28  Aligned_cols=268  Identities=18%  Similarity=0.210  Sum_probs=206.3

Q ss_pred             HHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHH
Q 010004           29 LCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIM  108 (520)
Q Consensus        29 ~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il  108 (520)
                      ++.+.+.+.+|. ++|+.+++++.|+++||......+  +.+    .-+.+.++.+.+++|.+|+|+|.+++||+++.+.
T Consensus         3 ~a~~~~~l~~~l-~lP~~v~~il~GillGp~~lg~i~--~~~----~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~   75 (273)
T TIGR00932         3 AAVLAVPLSRRL-GIPSVLGYLLAGVLIGPSGLGLIS--NVE----GVNHLAEFGVILLMFLIGLELDLERLWKLRKAAF   75 (273)
T ss_pred             HHHHHHHHHHHh-CCCHHHHHHHHHHHhCcccccCCC--ChH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            445567777765 599999999999999985432211  110    1234678999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCC-c-chhhhhhhhhhchhHHHH
Q 010004          109 MFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDET-P-LLYSLVFGEGVVNDATSV  186 (520)
Q Consensus       109 ~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~-~-~l~~ll~gEs~lND~~ai  186 (520)
                      ..+..+++++++.++..+.+++      ++++..++++|+++++|||.++.++++|.+. + +..+++.+++++||.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i  149 (273)
T TIGR00932        76 GVGVLQVLVPGVLLGLLLGHLL------GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVV  149 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHH
Confidence            9999999999777777666666      8999999999999999999999999999873 3 799999999999999999


Q ss_pred             HHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhh
Q 010004          187 VLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLE  266 (520)
Q Consensus       187 vlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g  266 (520)
                      +++.+......+...  +.......+.......++.+++.++...++.|+... ++..+.+...++.+++..+.++|.+|
T Consensus       150 ~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~la~~~g  226 (273)
T TIGR00932       150 PLLALLPLLATSAST--EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE-LRPSELFTAGSLLLMFGSAYFADLLG  226 (273)
T ss_pred             HHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHhC
Confidence            999888766442211  111222233344445556666677777777777653 23345667888889999999999999


Q ss_pred             cchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccch
Q 010004          267 LSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDA  319 (520)
Q Consensus       267 ~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i  319 (520)
                      .|+++|+|++|+++++...       +++..+..+.+..++.+++|+++|+++
T Consensus       227 ~s~~lgaf~aGl~~~~~~~-------~~~l~~~l~~~~~~f~plFF~~~G~~~  272 (273)
T TIGR00932       227 LSMALGAFLAGVVLSESEY-------RHKLESDLEPIGGVLLPLFFISVGMSV  272 (273)
T ss_pred             CcHHHHHHHHHHHHcCCch-------HHHHHHHHHhHHHHHHHHHHHHhCccC
Confidence            9999999999999996421       223445555566899999999999986

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=99.95  E-value=1.1e-24  Score=238.12  Aligned_cols=357  Identities=13%  Similarity=0.085  Sum_probs=245.2

Q ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHh
Q 010004           24 VAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHN  103 (520)
Q Consensus        24 ~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~  103 (520)
                      ++++..+.+.+.+++|. ++|..++++++|+++||......+  +..    +-+.+.++++.+++|..|+|+|.+++++.
T Consensus        11 ~~~l~~a~~~~~l~~rl-~~p~ilg~ilaGillGP~~lg~i~--~~~----~i~~laelGvv~LLF~iGLel~~~~l~~~   83 (601)
T PRK03659         11 VLFLFAAVVAVPLAQRL-GIGAVLGYLLAGIAIGPWGLGFIS--DVD----EILHFSELGVVFLMFIIGLELNPSKLWQL   83 (601)
T ss_pred             HHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhccccccCCC--cHH----HHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            34445555556666664 599999999999999986443211  000    11347789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCc--chhhhhhhhhhch
Q 010004          104 FLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETP--LLYSLVFGEGVVN  181 (520)
Q Consensus       104 ~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~--~l~~ll~gEs~lN  181 (520)
                      .+.++.++..++++++++++...++ +      +++|..++++|..++.||++.+.++++|.+..  +.+++..+..++|
T Consensus        84 ~~~~~~~g~~~v~~t~~~~~~~~~~-~------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~  156 (601)
T PRK03659         84 RRSIFGVGAAQVLLSAAVLAGLLML-T------DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQ  156 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-H------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHH
Confidence            9999999999999988776665543 4      78999999999999999999999999998743  5888999999999


Q ss_pred             hHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 010004          182 DATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG-LLTALVLKTLYFGKHSSVREIALMVLMAYLSYI  260 (520)
Q Consensus       182 D~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G-~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~  260 (520)
                      |..+++++.++..+.........+.. ....    +..+++.++.| ++..++.++... .+.++.....++++++++.+
T Consensus       157 Di~~i~ll~l~~~l~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~l~~vl~~a~  230 (601)
T PRK03659        157 DLAVIPALALVPLLAGSADEHFDWMK-IGMK----VLAFAGMLIGGRYLLRPLFRFIAA-SGVREVFTAAALLLVLGSAL  230 (601)
T ss_pred             HHHHHHHHHHHHHHhcCCCcchHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHH
Confidence            99888887766544332211111111 1111    11111112223 344555555432 23445556667777888889


Q ss_pred             HHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhccccchhHHHHHH
Q 010004          261 LAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMSKLSFVTSLGVYS  340 (520)
Q Consensus       261 ~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~~~~~~~~~~~~~  340 (520)
                      ++|.+|+|.++++|++|+++++..       .++..++-.+....++.++||+.+|+.+.....++        .++..+
T Consensus       231 l~~~~Gls~~LGAFlaGl~l~~s~-------~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~--------~~~~il  295 (601)
T PRK03659        231 FMDALGLSMALGTFIAGVLLAESE-------YRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYT--------HLLWVL  295 (601)
T ss_pred             HHHHhCccHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH--------hHHHHH
Confidence            999999999999999999999532       22333334444456788999999999985322111        122333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcchhhHHHHHHHH
Q 010004          341 ALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPDSATMITATIII  420 (520)
Q Consensus       341 ~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~~~~i~~~t~~v  420 (520)
                      .+.++.+++|+++++..+...         +.+++++..++...-+||..++.++..... .+    -..+...+..+.+
T Consensus       296 ~~~~~~l~~K~~~~~~~~~~~---------g~~~~~al~~g~~L~~~Gef~~vl~~~a~~-~g----~i~~~~~~~lv~~  361 (601)
T PRK03659        296 ISVVVLVAVKGLVLYLLARLY---------GLRSSERMQFAGVLSQGGEFAFVLFSAASS-QR----LLQGDQMALLLVV  361 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHhccccHHHHHHHHHHh-CC----CCCHHHHHHHHHH
Confidence            444567789999988766543         788999988887766899999988765432 11    2233444555566


Q ss_pred             HHHHHhhhh
Q 010004          421 VLFTTLVFG  429 (520)
Q Consensus       421 Vl~T~~v~g  429 (520)
                      +++|+++.+
T Consensus       362 v~ls~~~tP  370 (601)
T PRK03659        362 VTLSMMTTP  370 (601)
T ss_pred             HHHHHHHHH
Confidence            677776633

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=99.65  E-value=1.3e-13  Score=131.70  Aligned_cols=367  Identities=17%  Similarity=0.179  Sum_probs=223.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHH
Q 010004           20 ISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQ   99 (520)
Q Consensus        20 l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~   99 (520)
                      +...++.++++.++|.+..|.| +|+.+++++.|++.||....+    ..+ ..+.+ ...++.+..+||-.|++.+.|+
T Consensus         8 i~tiv~gl~lAFl~G~lA~rlr-lsPLVGyL~AGv~~gpftpGF----vad-~~La~-~LAelGViLLmFgvGLhfslkd   80 (408)
T COG4651           8 ITTIVGGLVLAFLLGALANRLR-LSPLVGYLLAGVLAGPFTPGF----VAD-QTLAP-ELAELGVILLMFGVGLHFSLKD   80 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHhcCCCCCCc----ccc-hhHHH-HHHHhhHHHHHHhcchheeHHH
Confidence            4445567788888899888876 999999999999999753322    111 12222 3678899999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHH---HHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCC--Ccchhhhh
Q 010004          100 FFHNFLTIMMFGVIGVFISVSI---ITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE--TPLLYSLV  174 (520)
Q Consensus       100 f~~~~~~il~la~~g~~i~~~~---i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~--~~~l~~ll  174 (520)
                      +.....    .|++|.+....+   .+.+.-+++      +|++...+.||-++|-.+.|+.+.-++|.+  ..+-.++-
T Consensus        81 LLavk~----iAipgAl~qia~at~lg~gL~~~l------gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iA  150 (408)
T COG4651          81 LLAVKA----IAIPGALAQIALATLLGMGLSSLL------GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIA  150 (408)
T ss_pred             HhhHHH----HhcchHHHHHHHHHHHHhHHHHHc------CCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEE
Confidence            876543    344554443332   233444444      899999999999999999999999999876  23567777


Q ss_pred             hhhhhchhHHHHHHHHHHHHH---Hh-hccchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCchhHHH
Q 010004          175 FGEGVVNDATSVVLFNAVQKI---DV-RELNGKAALRIFRDFLYLFSTSTILGVTAGL-LTALVLKTLYFGKHSSVREIA  249 (520)
Q Consensus       175 ~gEs~lND~~aivlf~~~~~~---~~-~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~-~~~~l~~~~~~~~~~~~~e~~  249 (520)
                      .|=-++.|...++-....-++   .. ++....+....++-.+.....=+.++.++|. +..|+..+... ..+++....
T Consensus       151 iGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~-tGsrElf~L  229 (408)
T COG4651         151 IGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA-TGSRELFTL  229 (408)
T ss_pred             EeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHH
Confidence            777888896665443333222   22 1222223333344444455555677777775 66666666643 223333344


Q ss_pred             HHHHHHH-HHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhhhc
Q 010004          250 LMVLMAY-LSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWRMS  328 (520)
Q Consensus       250 l~l~~~~-~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~~~  328 (520)
                      ..+.+++ .+|..+|.+|.|--+++|++|++++..      +.+++..++.. .+...+..+||+.+|+...+...-+  
T Consensus       230 ~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es------elshraa~~sl-pLrdaFaVlFFvsVGmlf~P~~l~~--  300 (408)
T COG4651         230 AVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES------ELSHRAAEDSL-PLRDAFAVLFFVSVGMLFDPMILIQ--  300 (408)
T ss_pred             HHHHHHHHHhhccceeeccchhHHHHHHHHHhcch------hhhHHHHHhcc-CHHHHHHHHHHHHhhhhcCcHHhhc--
Confidence            4444444 356677899999999999999999832      22222222211 2334566789999999986543111  


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCc
Q 010004          329 KLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDP  408 (520)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~  408 (520)
                            .-...+..+..++.+|-+..|......         +.+.+.++.++-+---.|.-++.++-.-.. .+.-+..
T Consensus       301 ------~pl~vlatllii~~gKs~aaf~ivr~F---------g~~~~TaLtis~SLaqigEFsfIlaGLgi~-l~llp~~  364 (408)
T COG4651         301 ------QPLAVLATLLIILFGKSVAAFFIVRAF---------GHPVRTALTISASLAQIGEFSFILAGLGIK-LNLLPEA  364 (408)
T ss_pred             ------chHHHHHHHHHHHhhhHHHHHHHHHHh---------CCcchHHHHHHHHHHhhhhHHHHHHHHhhh-hccCcHH
Confidence                  112234445566778877666544332         445555666555432246666665533211 1112233


Q ss_pred             chhhHHHHHHHHHHHHHhhhhhchH
Q 010004          409 DSATMITATIIIVLFTTLVFGFLTR  433 (520)
Q Consensus       409 ~~~~i~~~t~~vVl~T~~v~g~~~~  433 (520)
                      .++.+..    .-+.|++.++....
T Consensus       365 gr~Lvla----gailsIl~nPllf~  385 (408)
T COG4651         365 GRDLVLA----GAILSILLNPLLFA  385 (408)
T ss_pred             HHHHHHH----HHHHHHHHhHHHHH
Confidence            4555544    44566666554444

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]

Probab=99.57  E-value=1.5e-13  Score=153.00  Aligned_cols=389  Identities=17%  Similarity=0.154  Sum_probs=245.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccCh----hHHHHHhhHHHHHhhhhc
Q 010004           19 PISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDE----ELFFIYLLPPIIFNAGFQ   94 (520)
Q Consensus        19 ~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~----~~f~~~~L~~IlF~aG~~   94 (520)
                      .+.+++.++.+..-+.|++.|+.++|..+..++.|+++||..+...+.........+.    +.+.+++.-..+|.-|++
T Consensus        23 l~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~  102 (769)
T KOG1650|consen   23 LLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLE  102 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455555555566766676679999999999999999877544332222222121    236677788899999999


Q ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCC----CCcHHHHHHhhhhcccccHHHHHHhhhcCC--C
Q 010004           95 VKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFP-KLGFM----GLSIQDYLALGTIFSSTDTVCTLQILNQDE--T  167 (520)
Q Consensus        95 l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~-~~~~~----~~~~~~all~GailsaTdpv~v~~il~~~~--~  167 (520)
                      +|.+.++|+.+....+|+.++++++.. +.+....+. .....    ......-...+...|.|+-..+..++.|++  .
T Consensus       103 ~d~~~i~~~~kka~~I~~~~~~~p~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~  181 (769)
T KOG1650|consen  103 IDLRVIRRTGKKAIVIAIASVVLPFGL-GFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLN  181 (769)
T ss_pred             hhHHHhhccCceeEEEEEEEeehhhHh-hhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchh
Confidence            999999999999888888888887544 333332221 11100    111224567778889999999999999987  4


Q ss_pred             cchhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Q 010004          168 PLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLKTLYFGKHSSVRE  247 (520)
Q Consensus       168 ~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~~~~~~~~~~~~e  247 (520)
                      .+++.+...++++||..++.++.....+......  +.......+...+...+..=.++=.+..|+.|+....+...+..
T Consensus       182 se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~  259 (769)
T KOG1650|consen  182 SELGRLALSAAVVNDVAGWILLALALAFSSELKL--SPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAY  259 (769)
T ss_pred             chhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC--cchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccce
Confidence            5799999999999999999888776666543321  11111111111111111111112223444444432222233345


Q ss_pred             HHHHHHHHHHHHHHHHhhh-cchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHHhHHHHHHhccchhhhhhhh
Q 010004          248 IALMVLMAYLSYILAELLE-LSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIAETFIFLYVGMDAFDIEKWR  326 (520)
Q Consensus       248 ~~l~l~~~~~~~~~ae~~g-~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~F~~~G~~i~~~~~w~  326 (520)
                      ....++..+.+....+.++ .++++++|..|+++-|..     +-...-.+++-.....++.++.|...|....... + 
T Consensus       260 ~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~-----p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~-i-  332 (769)
T KOG1650|consen  260 ICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGP-----PLGSALIEKLEDLVSGLLLPLYFAISGLKTDISR-I-  332 (769)
T ss_pred             ehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCC-----chhHHHHHHHHHHHHHHHHHHHHHhhccceeHHH-H-
Confidence            6778888888888899887 788999999999998543     2222333444445566889999999999984321 1 


Q ss_pred             hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCC
Q 010004          327 MSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNSHRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTS  406 (520)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~  406 (520)
                             +.+......+....+.+++++...+..         .|++++|.+.++..+.-||-+.+..--....     .
T Consensus       333 -------~~~~~~~~~i~~~~~~K~l~t~~~sl~---------~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~-----~  391 (769)
T KOG1650|consen  333 -------NKWGALIRTILIFGAVKLLSTLGTSLY---------CKLPLRDSLALGLLMSTKGLVELIVLNTGLD-----R  391 (769)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCchhHHHHHHHHHHhhhHHHHHHHHHHhh-----c
Confidence                   113333444556678888888776653         2899999999999887788888765333211     1


Q ss_pred             CcchhhHHHHHHHHHHHHHhhhhhchHHHHHHhCCC
Q 010004          407 DPDSATMITATIIIVLFTTLVFGFLTRPLVKYLLPH  442 (520)
Q Consensus       407 ~~~~~~i~~~t~~vVl~T~~v~g~~~~~l~~~l~~~  442 (520)
                      ...++..++..+..+++++.+    ++|++..+.+.
T Consensus       392 ~~~~~~~f~~~vl~alv~t~I----~~~~l~~~y~p  423 (769)
T KOG1650|consen  392 KILSDEGFTVMVLMALVSTFI----TPPLLMFLYDP  423 (769)
T ss_pred             CCcccchHHHHHHHHHHHHhh----HHHHHHHhcch
Confidence            122333444333344444444    78888877643

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=99.05  E-value=4.5e-07  Score=93.64  Aligned_cols=272  Identities=14%  Similarity=0.150  Sum_probs=160.8

Q ss_pred             HHHHHhhHHHHHhhhhcCCHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhc
Q 010004           78 LFFIYLLPPIIFNAGFQVKKK-------QFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIF  150 (520)
Q Consensus        78 ~f~~~~L~~IlF~aG~~l~~~-------~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Gail  150 (520)
                      +.-..++.+--|..|+|+|.+       ..||..-+ ..-|+.|+++++++     |+.++      ..-..+.-=-++-
T Consensus        65 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPali-----y~~~n------~~~~~~~~GW~Ip  132 (423)
T PRK14853         65 WAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALI-----YVAVN------LAGGGALRGWAIP  132 (423)
T ss_pred             HHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHH-----HHHHh------CCchhhhhhhhhh
Confidence            345667777789999999653       33443333 34466777776433     44442      1112222223567


Q ss_pred             ccccHHHHHHhhhcCC--Cc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004          151 SSTDTVCTLQILNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG  227 (520)
Q Consensus       151 saTdpv~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G  227 (520)
                      ++||-+.++.++...+  .| +++..+.+-+++||..++++..++.   .++.+..   ....             .+.+
T Consensus       133 ~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~i~~~---~L~~-------------a~~~  193 (423)
T PRK14853        133 TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSELNLE---ALLL-------------ALVP  193 (423)
T ss_pred             hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCCCCHH---HHHH-------------HHHH
Confidence            8999999999998764  46 7999999999999999999877664   2222221   1100             0011


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccC-c----cchhhhHHHHHH-
Q 010004          228 LLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNM-T----DSSRITTRHTFA-  301 (520)
Q Consensus       228 ~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~-~----~~~~~~~~~~~~-  301 (520)
                      ....+++++.    +...  ....+.+.....+..+..|.+..+|.++.|+++-.+...+. .    ++-.++.++..+ 
T Consensus       194 ~~~l~~l~~~----~V~~--~~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p  267 (423)
T PRK14853        194 LALFWLLVQK----RVRK--WWLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRP  267 (423)
T ss_pred             HHHHHHHHHc----CCch--hhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHH
Confidence            1122233322    2222  22223335577888889999999999999999964221110 0    011233444444 


Q ss_pred             HHHHHHhHHH-HHHhccchhhhhhh-hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchh
Q 010004          302 MMSFIAETFI-FLYVGMDAFDIEKW-RMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQV  378 (520)
Q Consensus       302 ~~~~l~~~~~-F~~~G~~i~~~~~w-~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~  378 (520)
                      ..+++.-++| |...|+++.....+ +..    ...  ....+.+..+++|.++++..+++.-+.+. +.+++.+|++..
T Consensus       268 ~V~~~ILPLFAFANaGV~l~~~~~~~~~~----~~p--v~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~  341 (423)
T PRK14853        268 LSAGVAVPVFAFFSAGVAIGGLSGLGAAL----TDP--IVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVF  341 (423)
T ss_pred             HHHHHHHHHHHHHHhhheecCchhHHHHh----hch--HHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHH
Confidence            4457888888 99999998542211 100    001  22344556789999999999988765442 245678888765


Q ss_pred             hheecCCchhHHHHHHhh
Q 010004          379 VIWWAGLMRGAVSIALAF  396 (520)
Q Consensus       379 ~i~~~GlpRGav~~aLa~  396 (520)
                      -++.    -+.+.+-+++
T Consensus       342 gv~~----L~GIGFTmSl  355 (423)
T PRK14853        342 GVAL----LAGIGFTVSL  355 (423)
T ss_pred             HHHH----HHHHHHHHHH
Confidence            5553    3444444443

>TIGR00773 NhaA Na+/H+ antiporter NhaA

Probab=98.36  E-value=3.3e-05  Score=78.56  Aligned_cols=255  Identities=15%  Similarity=0.210  Sum_probs=152.3

Q ss_pred             HHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCCCcHHHHHHhhh
Q 010004           79 FFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLG---FMGLSIQDYLALGT  148 (520)
Q Consensus        79 f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~---~~~~~~~~all~Ga  148 (520)
                      .-..++.+--|..|+|+|.+-.       ||..-+ ..-|+.|+++++.+     |..++.-+   ..+|         +
T Consensus        56 iNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP-~~aA~GGm~vPa~i-----y~~~n~~~~~~~~GW---------~  120 (373)
T TIGR00773        56 INDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFP-VIAAIGGMIAPALI-----YLAFNANDPITREGW---------A  120 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HhheecCCCcccCcc---------c
Confidence            4456677777899999986643       222222 23355666665432     44443210   0122         4


Q ss_pred             hcccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 010004          149 IFSSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVT  225 (520)
Q Consensus       149 ilsaTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~  225 (520)
                      +=.+||-+-++.++.=.  +.| .++..+..-++.||..+|++-.++.+   ++.+.   ..             +...+
T Consensus       121 IP~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~i~~---~~-------------L~~a~  181 (373)
T TIGR00773       121 IPAATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---NDLSM---AA-------------LLVAA  181 (373)
T ss_pred             cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---CCCCH---HH-------------HHHHH
Confidence            55789999988887643  466 69999999999999999987665532   22221   11             11122


Q ss_pred             HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHH-
Q 010004          226 AGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMS-  304 (520)
Q Consensus       226 ~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~-  304 (520)
                      .+...-+.++|.+    .+.. ....+....+.+.+ ...|.+..+|.+..|+++.++...+  ++-.++.++..+... 
T Consensus       182 ~~~~~l~~~~~~~----v~~~-~~y~~lgvllW~~~-~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~  253 (373)
T TIGR00773       182 VAIAVLAVLNRCG----VRRL-GPYMLVGVILWFAV-LKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVA  253 (373)
T ss_pred             HHHHHHHHHHHcC----Cchh-hHHHHHHHHHHHHH-HHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHH
Confidence            2223334445442    1111 22222333333333 7999999999999999998753222  222345566655444 


Q ss_pred             HHHhHHH-HHHhccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhhee
Q 010004          305 FIAETFI-FLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWW  382 (520)
Q Consensus       305 ~l~~~~~-F~~~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~  382 (520)
                      ++.-++| |...|+++.... .+.     .... ....+.+..+++|.++++..+++.-+.+. +.+++.+|++..-++.
T Consensus       254 ~lilPlFAFanAGv~l~~~~-~~~-----~~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~  326 (373)
T TIGR00773       254 YLILPLFAFANAGVSLQGVS-LNG-----LTSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV  326 (373)
T ss_pred             HHHHHHHHHHhcCeeeecCc-chh-----hcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence            6777888 999999994322 110     0011 13344556789999999999998766654 3456788888765553

These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=97.48  E-value=0.033  Score=57.10  Aligned_cols=268  Identities=13%  Similarity=0.173  Sum_probs=148.7

Q ss_pred             HHHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCCCcHHHHHHhh
Q 010004           78 LFFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLG---FMGLSIQDYLALG  147 (520)
Q Consensus        78 ~f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~---~~~~~~~~all~G  147 (520)
                      +.-..++.+--|..|+|+|.+-.       ||..-+ ..-|+.|+++++.+     |+.+..-+   ..+|         
T Consensus        62 wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP-i~AAlGGmivPAlI-----y~~~n~g~~~~~~GW---------  126 (389)
T PRK09560         62 WINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILP-AIAAVGGMVVPALI-----YAAFNYNNPETLRGW---------  126 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HheeecCCCcccCcc---------
Confidence            34566777788999999986643       222222 23355666665432     44443210   0122         


Q ss_pred             hhcccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 010004          148 TIFSSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGV  224 (520)
Q Consensus       148 ailsaTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~  224 (520)
                      ++=.+||-+-++.++.=.  +.| .++.-+..=++.||..+|++-.++.+   ++.+.   .+       .      ...
T Consensus       127 gIPmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~i~~---~~-------L------~~a  187 (389)
T PRK09560        127 AIPAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SDLSL---PA-------L------ALA  187 (389)
T ss_pred             ccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CCCCH---HH-------H------HHH
Confidence            355789999998888743  466 69999999999999999987665432   22221   11       1      111


Q ss_pred             HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHH
Q 010004          225 TAGLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMS  304 (520)
Q Consensus       225 ~~G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (520)
                      +.+...-++++|.+. ++     ...-+......++.--.-|.+.-+|-+..|+++-.+......++--++.+|..+...
T Consensus       188 ~~~~~~l~~ln~~~v-~~-----~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v  261 (389)
T PRK09560        188 AIAIAVLFLLNRLGV-TK-----LTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWV  261 (389)
T ss_pred             HHHHHHHHHHHHcCC-cc-----chHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhh
Confidence            112223344454421 11     222233444555555667888999999999999874322211111234555555444


Q ss_pred             HHHhHHHHHHh--ccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhhe
Q 010004          305 FIAETFIFLYV--GMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIW  381 (520)
Q Consensus       305 ~l~~~~~F~~~--G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~  381 (520)
                      ...-.-+|.+.  |+.+.... ....    ...+  ...+.+..+++|.++++..+++.-+.+. +.+++.+|++..-++
T Consensus       262 ~~~IlPlFAlaNAGV~l~~~~-~~~~----~~pv--~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~  334 (389)
T PRK09560        262 AFAILPLFAFANAGVSLAGIS-LSSL----TSPV--PLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVS  334 (389)
T ss_pred             hhhhHHHHHhhcCCeeecCCc-HHhc----cCcH--HHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence            43333334544  55552211 1000    0112  2233456789999999999998766553 345678888765554


Q ss_pred             ecCCchhHHHHHHhh
Q 010004          382 WAGLMRGAVSIALAF  396 (520)
Q Consensus       382 ~~GlpRGav~~aLa~  396 (520)
                      .    -+.+.+-+++
T Consensus       335 ~----L~GIGFTmSL  345 (389)
T PRK09560        335 V----LCGIGFTMSL  345 (389)
T ss_pred             H----HHHHHHHHHH
Confidence            3    3555554443

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=97.27  E-value=0.25  Score=50.56  Aligned_cols=81  Identities=19%  Similarity=0.223  Sum_probs=48.8

Q ss_pred             HHHHHHHhh------cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHH-hhhhcCCHHHHHHh
Q 010004           31 LIVGHLLEE------NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIF-NAGFQVKKKQFFHN  103 (520)
Q Consensus        31 ~~~~~~~~~------~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF-~aG~~l~~~~f~~~  103 (520)
                      .++|+.++|      +..+||++..=++..++++..+.....+    .++|.++ -+. +..+.| ..|++.+.+.++|-
T Consensus        18 lllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~----~~fd~~l-~~~-fmliFFttiglsa~~~~lkkg   91 (404)
T COG0786          18 LLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVS----LNFDTSL-QDV-FMLIFFATIGLSASFKLLKKG   91 (404)
T ss_pred             HHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEE----EeCCccc-ccH-HHHHHHHHhccccchhHHHhc
Confidence            346666654      2358999887777778887666432211    2233211 111 112223 56899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 010004          104 FLTIMMFGVIGVFI  117 (520)
Q Consensus       104 ~~~il~la~~g~~i  117 (520)
                      ++....+...+..+
T Consensus        92 Gk~l~if~~~a~~l  105 (404)
T COG0786          92 GKKLAIFLATAAGL  105 (404)
T ss_pred             ChhHHHHHHHHHHH
Confidence            99877766555544

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=97.18  E-value=0.094  Score=53.78  Aligned_cols=267  Identities=15%  Similarity=0.198  Sum_probs=147.2

Q ss_pred             HHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh-hhc
Q 010004           79 FFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG-TIF  150 (520)
Q Consensus        79 f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G-ail  150 (520)
                      .-..++.+--|..|+|+|.+-.       ||..-+ ..-|+.|+++++++     |+.++. +.+.      ..=| ++=
T Consensus        63 iNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP-i~AAlGGmivPAli-----y~~~n~-~~~~------~~~GWaIP  129 (388)
T PRK09561         63 INDGLMAVFFLLIGLEVKRELLEGSLASRRQAALP-VIAAIGGMLVPALI-----YLLFNY-ADPV------TREGWAIP  129 (388)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHhchHHHHHH-----Hhheec-CCCc------ccCccccc
Confidence            4456777778899999986643       222222 23355666665432     444432 1100      0011 455


Q ss_pred             ccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004          151 SSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG  227 (520)
Q Consensus       151 saTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G  227 (520)
                      .+||-+-++.++.=.  +.| .++..+..=++.||..+|++-.++.+   ++.+.   .       +...      ....
T Consensus       130 ~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~-------~L~~------a~~~  190 (388)
T PRK09561        130 AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SDLSM---V-------SLGV------AAVA  190 (388)
T ss_pred             cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCccH---H-------HHHH------HHHH
Confidence            789999998888543  466 69999999999999999987665532   22221   1       1111      1111


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHHH
Q 010004          228 LLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFIA  307 (520)
Q Consensus       228 ~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  307 (520)
                      ...-+.+++.+. ++     ...-+......++.--.-|.+.-+|-+..|+++-.+..+.  ++--++.+|..+......
T Consensus       191 ~~~l~~ln~~~v-~~-----~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~--~~pl~rleh~L~p~v~~~  262 (388)
T PRK09561        191 IAVLAVLNLCGV-RR-----TSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHG--RSPAERLEHGLHPWVAFL  262 (388)
T ss_pred             HHHHHHHHHcCC-cc-----chHHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCC--CCHHHHHHHHhhhhhhhe
Confidence            222334444321 11     2222334445566666678899999999999998754322  111234444444433333


Q ss_pred             hHHHHHHh--ccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhheecC
Q 010004          308 ETFIFLYV--GMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWWAG  384 (520)
Q Consensus       308 ~~~~F~~~--G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~G  384 (520)
                      -.-+|.+.  |+.+.... .+..    ...+  ...+.+..+++|.++++..+++.-+++. +.+++.+|++..-++.  
T Consensus       263 IlPlFAfaNAGV~l~~~~-~~~~----~~pv--~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~--  333 (388)
T PRK09561        263 ILPLFAFANAGVSLQGVT-LDGL----TSPL--PLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV--  333 (388)
T ss_pred             eHHHHHhhcCCeeeccCc-HHhh----cCcH--HHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH--
Confidence            33334444  55553211 1110    0112  1233446779999999999998766653 3456788888755553  


Q ss_pred             CchhHHHHHHhh
Q 010004          385 LMRGAVSIALAF  396 (520)
Q Consensus       385 lpRGav~~aLa~  396 (520)
                        -+.+.+-+++
T Consensus       334 --L~GIGFTmSL  343 (388)
T PRK09561        334 --LCGIGFTMSI  343 (388)
T ss_pred             --HHHHHHHHHH
Confidence              3445554443

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=97.09  E-value=0.12  Score=53.76  Aligned_cols=264  Identities=15%  Similarity=0.152  Sum_probs=144.9

Q ss_pred             HHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh-hhc
Q 010004           79 FFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG-TIF  150 (520)
Q Consensus        79 f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G-ail  150 (520)
                      .-..++.+--|..|+|+|.+-.       ||..-+ ..-|+.|+++++.+     |+.+.. +.   +-    .=| +|=
T Consensus        67 INDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lP-iiAAlGGmivPAlI-----y~~~n~-~~---~~----~~GWgIP  132 (423)
T PRK14855         67 VNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALA-VVAALGGMLVPAAL-----YTALNA-GG---PG----ASGWGVP  132 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHH-HHHHHhchHHHHHH-----Hheeec-CC---Cc----cCccccc
Confidence            4456777778899999986643       222222 23355666665432     444432 11   00    112 456


Q ss_pred             ccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004          151 SSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG  227 (520)
Q Consensus       151 saTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G  227 (520)
                      .+||.+-++.++.=.  +.| .++..+..-+++||..+|++-.++.+   ++.+.   .       +.      ...+.+
T Consensus       133 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~-------~L------~~a~~~  193 (423)
T PRK14855        133 MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SGLNL---L-------AL------LLAALT  193 (423)
T ss_pred             cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CCCCH---H-------HH------HHHHHH
Confidence            899999999888654  467 69999999999999999887665432   22221   1       11      111112


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCc------------------
Q 010004          228 LLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMT------------------  289 (520)
Q Consensus       228 ~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~------------------  289 (520)
                      ...-+++++.+. +     ....-+......++.--.-|.+.-+|-+..|+++-.+..++..                  
T Consensus       194 ~~~l~~ln~~~v-~-----~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (423)
T PRK14855        194 WALALLAGRLGV-T-----SLKIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVG  267 (423)
T ss_pred             HHHHHHHHHcCC-c-----cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhh
Confidence            222344444321 1     1222333444555566667888899999999999764111100                  


Q ss_pred             ------c------ch-hhhHHHHHHHHHHHHhHHHHHHh--ccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Q 010004          290 ------D------SS-RITTRHTFAMMSFIAETFIFLYV--GMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFV  354 (520)
Q Consensus       290 ------~------~~-~~~~~~~~~~~~~l~~~~~F~~~--G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v  354 (520)
                            +      ++ -++.+|..+......-.-+|.+.  |+.+....         ...+  ...+.+..+++|.+++
T Consensus       268 ~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~---------~~pv--~lGI~~GLvvGK~lGI  336 (423)
T PRK14855        268 ARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG---------LGTV--SLGVFLGLLLGKPLGV  336 (423)
T ss_pred             HHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC---------CCcH--HHHHHHHHHhcchHHH
Confidence                  0      00 12344444433333223334444  55552210         0112  2233456789999999


Q ss_pred             HHHHHHhhhhcc-CCCCCCCccchhhheecCCchhHHHHHHhh
Q 010004          355 FPLSLLSNYMNS-HRSPSISFNHQVVIWWAGLMRGAVSIALAF  396 (520)
Q Consensus       355 ~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~GlpRGav~~aLa~  396 (520)
                      +..+++.-+.+. +.+++.+|++..-++.    -+.+.+-+++
T Consensus       337 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~----LaGIGFTmSL  375 (423)
T PRK14855        337 VGGAWLAVRLGLASLPRRVNWLHMLGAGL----LAGIGFTMSL  375 (423)
T ss_pred             HHHHHHHHHhCCCCCCCCCCHHHHHHHHH----HHHHHHHHHH
Confidence            999998766553 3456788887655543    3444454443

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=97.06  E-value=0.14  Score=53.53  Aligned_cols=308  Identities=15%  Similarity=0.179  Sum_probs=161.2

Q ss_pred             HHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh-hhc
Q 010004           79 FFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG-TIF  150 (520)
Q Consensus        79 f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G-ail  150 (520)
                      .-..++.+--|..|+|++.+-.       ||..-+ ..-|+.|+++++++     |+.+..-+-       . .=| +|=
T Consensus        72 INDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lP-i~AAlGGmivPAlI-----Y~~~n~~~~-------~-~~GWgIP  137 (438)
T PRK14856         72 IDDVLMALFFLMIGLEIKRELLFGELSSFKKASFP-VIAALGGMIAPGLI-----YFFLNADTP-------S-QHGFGIP  137 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHH-HHHHHhccHHHHHH-----HhheecCCC-------c-cCccccc
Confidence            4466777778899999986643       222222 23355666665432     444432110       0 112 456


Q ss_pred             ccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004          151 SSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG  227 (520)
Q Consensus       151 saTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G  227 (520)
                      .+||.+-++.++.=.  +.| .++..+..=++.||..+|++-.++.+   ++.+.   .       +      ++..+.+
T Consensus       138 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~-------~------L~~a~~~  198 (438)
T PRK14856        138 MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TNLKF---A-------W------LLGALGV  198 (438)
T ss_pred             cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCCcH---H-------H------HHHHHHH
Confidence            889999999888543  466 79999999999999999987665532   22221   1       1      1111222


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCc------------------
Q 010004          228 LLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMT------------------  289 (520)
Q Consensus       228 ~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~------------------  289 (520)
                      ....+++++.+. ++     ...-+......++.--.-|.+.-+|.+..|+++-.+.+.+..                  
T Consensus       199 ~~~l~~ln~~~v-~~-----~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (438)
T PRK14856        199 VLVLAVLNRLNV-RS-----LIPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGA  272 (438)
T ss_pred             HHHHHHHHHcCC-cc-----ccHHHHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccccc
Confidence            233344454421 11     222223444555555667888889999999998654322100                  


Q ss_pred             ----cc---------------h-hhhHHHHHHHHHHHHhHHHHHH--hccchhhhhhhhhccccchhHHHHHHHHHHHHH
Q 010004          290 ----DS---------------S-RITTRHTFAMMSFIAETFIFLY--VGMDAFDIEKWRMSKLSFVTSLGVYSALILMIL  347 (520)
Q Consensus       290 ----~~---------------~-~~~~~~~~~~~~~l~~~~~F~~--~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~  347 (520)
                          ++               + -++.+|.........-.-+|.+  .|+.+.. .....     ...+  ...+.+..+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~-~~~~~-----~~pv--~lGI~~GLv  344 (438)
T PRK14856        273 LLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDS-SINLE-----VDKV--LLGVILGLC  344 (438)
T ss_pred             ccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceecc-chhhc-----cCcH--HHHHHHHHH
Confidence                00               0 1233444443333233333444  4555521 10000     0112  223344678


Q ss_pred             HHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhheecCCchhHHHHHHhhhhhccCCCCCCcc-hhhHHHHHHHHHHHHH
Q 010004          348 LGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWWAGLMRGAVSIALAFKQFTYSGVTSDPD-SATMITATIIIVLFTT  425 (520)
Q Consensus       348 v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~GlpRGav~~aLa~~~~~~~~~~~~~~-~~~i~~~t~~vVl~T~  425 (520)
                      ++|.++++..+++.-+++. +.+++.+|++..-++.    -+.+.+-+++..-..    ..+. .+......=.-|+...
T Consensus       345 vGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~----LaGIGFTmSLFIa~L----AF~~~~~~~~~~aKigIL~gS  416 (438)
T PRK14856        345 LGKPLGIFLITFISEKLKITARPKGISWWHILGAGL----LAGIGFTMSMFISNL----AFTSEHKDAMEVAKIAILLGS  416 (438)
T ss_pred             hcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHH----hcCCCchhHHHHHHHHHHHHH
Confidence            9999999999998776653 3456788887655543    345555444432110    0111 0112222333445555


Q ss_pred             hhhhhchHHHHHHhCC
Q 010004          426 LVFGFLTRPLVKYLLP  441 (520)
Q Consensus       426 ~v~g~~~~~l~~~l~~  441 (520)
                      ++.++..--++++...
T Consensus       417 ~lsai~G~~~L~~~~~  432 (438)
T PRK14856        417 LISGIIGALYLFALDK  432 (438)
T ss_pred             HHHHHHHHHHHHHcch
Confidence            5555555555654433

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=96.96  E-value=0.3  Score=49.51  Aligned_cols=152  Identities=12%  Similarity=0.082  Sum_probs=71.2

Q ss_pred             ccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHhhhccCCCCCcHHHHHHhhhh
Q 010004           73 RFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI---ITVGSWWLFPKLGFMGLSIQDYLALGTI  149 (520)
Q Consensus        73 ~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~---i~~~~~~l~~~~~~~~~~~~~all~Gai  149 (520)
                      ..+.|....+++..|.|..|+++|.+++++..+..-... .+...+.++   .+.....+++.+.  +-++..++++=++
T Consensus        26 ~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l-~~~~~~fvl~Pll~~~~~~l~~~~~--~~~l~~Gl~~~~~  102 (313)
T PF13593_consen   26 VIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHL-FVQAFNFVLFPLLGFGLSRLFPAFL--PPELALGLLILAC  102 (313)
T ss_pred             ccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHhhccC--CHHHHHHHHHHhh
Confidence            345556777889999999999999999987665532211 112222222   2333333332111  2233444444444


Q ss_pred             cccc-cHHHHHHhhhcCCCcchhhhhhhhhhchhHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004          150 FSST-DTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDV-RELNGKAALRIFRDFLYLFSTSTILGVTAG  227 (520)
Q Consensus       150 lsaT-dpv~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G  227 (520)
                      +-+| +..++..-. -.++..  ..+ .++.++...++++.=....+.. ++....+....+.++....+.=.++|-+.-
T Consensus       103 lPtTv~S~v~~T~~-AgGN~a--~Al-~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r  178 (313)
T PF13593_consen  103 LPTTVSSSVVLTRL-AGGNVA--LAL-FNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLR  178 (313)
T ss_pred             CCchhhHHHHHHHH-cCCCHH--HHH-HHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333 222111111 112221  111 2455666677766554444333 222223444455555555555555555444


Q ss_pred             HHHH
Q 010004          228 LLTA  231 (520)
Q Consensus       228 ~~~~  231 (520)
                      ....
T Consensus       179 ~~~~  182 (313)
T PF13593_consen  179 RWVP  182 (313)
T ss_pred             HHHH
Confidence            3333

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH

Probab=96.56  E-value=0.017  Score=59.05  Aligned_cols=261  Identities=16%  Similarity=0.199  Sum_probs=129.5

Q ss_pred             HHHHHhhHHHHHhhhhcCCHHHHH----HhHHH--HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh-hhc
Q 010004           78 LFFIYLLPPIIFNAGFQVKKKQFF----HNFLT--IMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG-TIF  150 (520)
Q Consensus        78 ~f~~~~L~~IlF~aG~~l~~~~f~----~~~~~--il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G-ail  150 (520)
                      ++-+.++.+--|..|+|+|.+-..    +..+.  -..-|+.|+++++.     .|..++.    +-+  + -.=| ++=
T Consensus        58 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----Iyl~~n~----~~~--~-~~~GW~IP  125 (378)
T PF06965_consen   58 WINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----IYLAFNA----GGP--E-AAHGWAIP  125 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----HHGGG------SST--T-HHHHTSSS
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----HHheeec----CCC--C-cCceEEec
Confidence            455677888889999999866432    11111  12335555555532     2444432    111  1 1112 567


Q ss_pred             ccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010004          151 SSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAG  227 (520)
Q Consensus       151 saTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G  227 (520)
                      .+||.+-++.++.=.  +.| .++..+..=+++||..+++.-.++.+   ++.+.          .+.      ...+.+
T Consensus       126 ~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~i~~----------~~L------~~a~~~  186 (378)
T PF06965_consen  126 MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DGISL----------LWL------LLAAAA  186 (378)
T ss_dssp             S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS--------H----------HHH------HHHHHH
T ss_pred             ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CCCCH----------HHH------HHHHHH
Confidence            899999999998644  466 69999999999999999988776542   22221          111      111112


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccC--ccchhhhHHHHHHHHHH
Q 010004          228 LLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNM--TDSSRITTRHTFAMMSF  305 (520)
Q Consensus       228 ~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~--~~~~~~~~~~~~~~~~~  305 (520)
                      ...-+.++|.+    ...  ....+......++.-..-|.+.-+|-+..|+++-.+.+.+.  .++.-++.+|..+....
T Consensus       187 ~~~l~~l~r~~----v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~  260 (378)
T PF06965_consen  187 LLLLFVLNRLG----VRS--LWPYLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVA  260 (378)
T ss_dssp             HHHHHHHHHTT---------THHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCC----Cce--ehHHHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhh
Confidence            22234444432    111  12223334445555567788899999999999988765532  11222344455444433


Q ss_pred             -HHhH-HHHHHhccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhhee
Q 010004          306 -IAET-FIFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWW  382 (520)
Q Consensus       306 -l~~~-~~F~~~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~  382 (520)
                       +.-+ |-|.=.|+.+.... .+..    .  -.....+.+..+++|.++++..+++..+.+. +.+++.+|++..-++.
T Consensus       261 ~~IlPlFAlaNAGV~l~~~~-~~~~----~--~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~  333 (378)
T PF06965_consen  261 FVILPLFALANAGVSLSGSS-LGDL----T--SPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL  333 (378)
T ss_dssp             HTHHHHHHHHHS----SSS----TH----H--HHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH
T ss_pred             hhhHHhHhheeCceEEecCc-hHhh----h--ChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence             3222 33444455553221 1100    0  0111123345779999999988888765543 2456788887765554

NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=96.53  E-value=1.3  Score=46.06  Aligned_cols=70  Identities=17%  Similarity=0.222  Sum_probs=38.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHH
Q 010004           41 RWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGV  115 (520)
Q Consensus        41 ~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~  115 (520)
                      ..+|+++..=+++.++.........    ...++|.++ ...++.+..=..|+..+.+.++|-++.+..+....+
T Consensus        32 ~~IPasvIgGli~~il~~~l~~~~~----~~~~f~~~l-~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~  101 (368)
T PF03616_consen   32 LFIPASVIGGLIFAILPLILGGFGG----ISISFDTSL-QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAI  101 (368)
T ss_pred             ccCCchHHHHHHHHHHHHHHHhcCc----eEEEechhH-HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHH
Confidence            4589887665556666554443221    113455432 222222222255778888888888877666554443

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=96.46  E-value=0.67  Score=47.53  Aligned_cols=268  Identities=14%  Similarity=0.186  Sum_probs=144.0

Q ss_pred             HHHHHhhHHHHHhhhhcCCHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh-hh
Q 010004           78 LFFIYLLPPIIFNAGFQVKKKQF-------FHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG-TI  149 (520)
Q Consensus        78 ~f~~~~L~~IlF~aG~~l~~~~f-------~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G-ai  149 (520)
                      +.-+.++.+--|..|+|+|.+-.       ||..-+ ..-|+.|+++++.+     |..++.      +  ....=| ++
T Consensus        59 WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP-~~AAlGGmivPAlI-----y~~~n~------~--~~~~~GW~I  124 (383)
T PRK14854         59 WINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITP-AIAAFAGLAMPSLI-----YLSINH------D--IKVINGWAI  124 (383)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHHHH-----HHhhcc------C--CcccCcccc
Confidence            34556677777899999986633       222222 23355666666433     444421      1  011112 45


Q ss_pred             cccccHHHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010004          150 FSSTDTVCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTA  226 (520)
Q Consensus       150 lsaTdpv~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~  226 (520)
                      =.+||-+-++.++.=.  +.| .++..+..-+++||..+|++-.++.+   ++.+.          .+.......     
T Consensus       125 P~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~----------~~L~~A~~~-----  186 (383)
T PRK14854        125 PSATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT---KSLSL----------LSLSLGTLF-----  186 (383)
T ss_pred             ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CCccH----------HHHHHHHHH-----
Confidence            5789999988887643  466 69999999999999999987665432   22221          111111111     


Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHHHH
Q 010004          227 GLLTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMSFI  306 (520)
Q Consensus       227 G~~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l  306 (520)
                       ...-+.++|.+   +.+.  ...-+......++.--.-|.+.-+|-+..|+++-....+.  ++--++.+|..+.....
T Consensus       187 -~~~l~~~nr~~---~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~--~~pl~rleh~L~p~v~~  258 (383)
T PRK14854        187 -ILAMIICNRIF---KINR--SSVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDK--DSPANFMEDSLHPWIIY  258 (383)
T ss_pred             -HHHHHHHHHhc---CCce--ehHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCC--CCHHHHHHHHhhchHHH
Confidence             11122334331   1111  1222334455555566678889999999999998743221  11123344444433333


Q ss_pred             HhHHHHHHh--ccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhheec
Q 010004          307 AETFIFLYV--GMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWWA  383 (520)
Q Consensus       307 ~~~~~F~~~--G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~  383 (520)
                      .-.-+|.+.  |+.+.... .+..    ...+  ...+.+..+++|.++++..+++.-+.+. +.+++.+|++..-++. 
T Consensus       259 ~IlPlFA~aNAGV~l~~~~-~~~~----~~pv--~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~-  330 (383)
T PRK14854        259 FILPVFAFANAGISFSGIS-FSIL----FEPI--TLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL-  330 (383)
T ss_pred             hhHHHHHhhcCCeeeccCc-HHhh----cCcH--HHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-
Confidence            333334444  55553221 1110    0112  2233446789999999999988765432 2456788887655553 


Q ss_pred             CCchhHHHHHHhh
Q 010004          384 GLMRGAVSIALAF  396 (520)
Q Consensus       384 GlpRGav~~aLa~  396 (520)
                         -+.+.+-+++
T Consensus       331 ---L~GIGFTmSL  340 (383)
T PRK14854        331 ---LCGIGFTMSL  340 (383)
T ss_pred             ---HHHHHHHHHH
Confidence               3444444443

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=96.11  E-value=1.3  Score=44.11  Aligned_cols=271  Identities=16%  Similarity=0.190  Sum_probs=138.9

Q ss_pred             HhhHHHHHhhhhcCCHHHHHH---hHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccH
Q 010004           82 YLLPPIIFNAGFQVKKKQFFH---NFLTI---MMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDT  155 (520)
Q Consensus        82 ~~L~~IlF~aG~~l~~~~f~~---~~~~i---l~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdp  155 (520)
                      -+..+--+..|+|+|++-+.-   |++..   ..-|..|++.++.     .|++++.      +-+...===++-++||.
T Consensus        69 gLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl-----iy~~~n~------~~p~~~~GWaIP~ATDi  137 (390)
T COG3004          69 GLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL-----IYLALNA------GDPATLEGWAIPMATDI  137 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh-----Hhheeec------CChhhhcCcCcccHHHH
Confidence            344555567899998776643   33332   1223344444432     2444421      11111111256789999


Q ss_pred             HHHHHhhhcC--CCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004          156 VCTLQILNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTAL  232 (520)
Q Consensus       156 v~v~~il~~~--~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~  232 (520)
                      +-++.++.-.  ++| .++.-+..-+++||.-+++.-.++..   ++.+...          ...      ...+...-.
T Consensus       138 AFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~Ls~~a----------l~~------a~~~i~vL~  198 (390)
T COG3004         138 AFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TDLSMAA----------LGI------AALAIAVLA  198 (390)
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CCccHHH----------HHH------HHHHHHHHH
Confidence            9999998754  577 68888999999999998887766532   2222110          001      111112223


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHH-HHHHHhH-H
Q 010004          233 VLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAM-MSFIAET-F  310 (520)
Q Consensus       233 l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~-~  310 (520)
                      .+++.+.    +.  ...-+.+....+..-..-|.+.-+|-++.|+++--.+.+..+  .-++.+|.... ..++.-+ +
T Consensus       199 ~lN~~~v----~~--l~~Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~s--pl~~leh~L~pwvaf~IlPlF  270 (390)
T COG3004         199 VLNRLGV----RR--LSPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGES--PLERLEHALHPWVAFFILPLF  270 (390)
T ss_pred             HHHHhCc----hh--hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCC--cHHHHHHHhhhhHHHHHHHHH
Confidence            3444421    11  122223333333333344666667777777776543322212  22334444433 3343333 4


Q ss_pred             HHHHhccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCCccchhhhee-cCCchh
Q 010004          311 IFLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMNS-HRSPSISFNHQVVIWW-AGLMRG  388 (520)
Q Consensus       311 ~F~~~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~i~~-~GlpRG  388 (520)
                      -|.=.|.++...+.-...     ..+.  ..+..-.+++|.++++..+++.-+++- +.+++.+|++..-++. +|. -=
T Consensus       271 aFaNAGvsl~g~~~~~l~-----s~l~--lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGI-GF  342 (390)
T COG3004         271 AFANAGVSLQGVSLSGLT-----SPLT--LGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGI-GF  342 (390)
T ss_pred             HHccCCcccccccccccc-----cchH--HHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhh-hH
Confidence            455567666433211110     1111  223345679999999999988655442 3466788887655443 342 23


Q ss_pred             HHHHHHhhhh
Q 010004          389 AVSIALAFKQ  398 (520)
Q Consensus       389 av~~aLa~~~  398 (520)
                      .+++-++...
T Consensus       343 TMSlFI~~LA  352 (390)
T COG3004         343 TMSLFIASLA  352 (390)
T ss_pred             HHHHHHHHHh
Confidence            4555555443

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=95.69  E-value=2.7  Score=42.33  Aligned_cols=114  Identities=17%  Similarity=0.207  Sum_probs=68.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHH
Q 010004           41 RWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVS  120 (520)
Q Consensus        41 ~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~  120 (520)
                      ..++.....+++|+++|......++. -+.-.++..    ...|..=+-.-|.+++..++.+.....+...+..+..+..
T Consensus        24 ~~l~~~~~AillG~~i~n~~~~~~~~-~~~Gi~~~~----k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~   98 (305)
T PF03601_consen   24 PGLGALLIAILLGMLIGNLFFGLPAR-FKPGIKFSS----KKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFL   98 (305)
T ss_pred             cCccHHHHHHHHHHHHhhhccCCcHH-HHhHHHHHH----HHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence            45788888999999998511111110 000122222    2444444566799999999999988777777666666554


Q ss_pred             HHHHHHHHhhhccCCCCCcHHHHHHhh---hhcccccHHHHHHhhhcC
Q 010004          121 IITVGSWWLFPKLGFMGLSIQDYLALG---TIFSSTDTVCTLQILNQD  165 (520)
Q Consensus       121 ~i~~~~~~l~~~~~~~~~~~~~all~G---ailsaTdpv~v~~il~~~  165 (520)
                      ...+...-.+      +++...+.++|   +|+.++.-+++.++.|..
T Consensus        99 ~~~~lg~r~~------~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~  140 (305)
T PF03601_consen   99 LTYWLGRRLF------GLDRKLAILIAAGTSICGASAIAATAPVIKAK  140 (305)
T ss_pred             HHHHHHHHHh------CCCHHHHHHHHhhcccchHHHHHHHcccccCC
Confidence            4433431233      77888888877   344455555555666543

; GO: 0016021 integral to membrane

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.89  E-value=0.88  Score=50.49  Aligned_cols=72  Identities=15%  Similarity=0.269  Sum_probs=52.2

Q ss_pred             HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHH
Q 010004           79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVC  157 (520)
Q Consensus        79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~  157 (520)
                      |..+++|+.-...|+++|.+.+.+++..++.+.+..++.-.+.+...+. .+      ++++.+++.+|..+++.....
T Consensus       266 f~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~-~~------g~~~~~al~~g~~L~~~Gef~  337 (601)
T PRK03659        266 FKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR-LY------GLRSSERMQFAGVLSQGGEFA  337 (601)
T ss_pred             HHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHhccccHH
Confidence            6678888888899999999999998877665554444444444333333 33      899999999999888776544

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.66  E-value=1  Score=50.13  Aligned_cols=71  Identities=13%  Similarity=0.167  Sum_probs=50.3

Q ss_pred             HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHH
Q 010004           79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTV  156 (520)
Q Consensus        79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv  156 (520)
                      |..+++|+--...|+++|...+.+++..++.+.+..++.-.+.+...+. ++      ++++.+++.+|..++.-...
T Consensus       269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~-~~------g~~~~~a~~~gl~L~~~Gef  339 (621)
T PRK03562        269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLAR-PL------GVPRKQRRWFAVLLGQGGEF  339 (621)
T ss_pred             HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHhHHHHHHHHHhccccH
Confidence            6667787777788999999999888777665544444444444333333 33      89999999999988866554

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.38  E-value=1.6  Score=47.97  Aligned_cols=72  Identities=14%  Similarity=0.080  Sum_probs=46.8

Q ss_pred             HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHH
Q 010004           79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVC  157 (520)
Q Consensus        79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~  157 (520)
                      +...++|+--...|+++|...+.+++..++.+.+...+.-.+....... ++      +.++.+++..|..+++.....
T Consensus       277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~-~~------g~~~~~a~~~gl~l~~~Gef~  348 (558)
T PRK10669        277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVR-LF------GHSRRTALTIAASLAQIGEFA  348 (558)
T ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCChhhHHHHHHHHhcccchH
Confidence            4466777777789999999999887655544333333333222222222 23      789999999999988765543

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=93.90  E-value=1.8  Score=40.22  Aligned_cols=145  Identities=14%  Similarity=0.075  Sum_probs=61.8

Q ss_pred             HhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHh
Q 010004           82 YLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQI  161 (520)
Q Consensus        82 ~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~i  161 (520)
                      +.+..++|..|.+++.+++++..+.--. -+.|.+.+.++.-..++.+...    -++....+..|.++.+..|....+.
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~-l~~~l~~~~~i~Plla~~l~~~----~~~~~~~~~~Gl~l~~~~P~~~~s~   76 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL-LLIGLLAQFLIMPLLAFGLAWL----LLPLSPALALGLLLVAACPGGPASN   76 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHH-HHHHHHHHHHHHHHHHHHHH-H----HTT--HHHHHHHHHHHHS-B-THHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHhcCCcHHHHH
Confidence            4567889999999999999977665222 1233334433332222222100    1233344566666555555544443


Q ss_pred             hhc---CCCcchhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004          162 LNQ---DETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVLK  235 (520)
Q Consensus       162 l~~---~~~~~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~~  235 (520)
                      .-.   .++..+   -.+-..+|...+++..=....+..+.....+ .......+......+++=.+.|.+..+..+
T Consensus        77 ~~t~l~~Gd~~l---s~~lt~istll~~~~~P~~~~l~~~~~~~~~-~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p  149 (187)
T PF01758_consen   77 VFTYLAGGDVAL---SVSLTLISTLLAPFLMPLLLYLLSGGSVDVD-SISPWDIIKSLLLIVILPLLLGMLLRKYLP  149 (187)
T ss_dssp             HHHHHTT--HHH---HHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH----HHHHHHHHHHHTHHHHHHHHHHHHHHG
T ss_pred             HHHHHhCCCccc---ccceeeHHHHHHHHHHHHHHHHHhccccCCc-hhhHHHHHHHHHheehHHHhHHHHHHHHhh
Confidence            322   122222   2233455656665554444443333222222 111222333333334444455555554444

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=93.80  E-value=8.3  Score=38.88  Aligned_cols=148  Identities=14%  Similarity=0.070  Sum_probs=79.5

Q ss_pred             HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHhhhccCCCCCcHHHHHHhhhhcccccH
Q 010004           79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI---ITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDT  155 (520)
Q Consensus        79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~---i~~~~~~l~~~~~~~~~~~~~all~GailsaTdp  155 (520)
                      ....++..|+|.-|+.++.++|++..+.-... .+|...+..+   ++++....+      .  ...-+..|-++-.+-|
T Consensus        39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~~~~------~--l~~~l~~Gl~ll~~~P  109 (319)
T COG0385          39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLAKLF------P--LPPELAVGLLLLGCCP  109 (319)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHHHc------C--CCHHHHHhHHheeeCC
Confidence            45788999999999999999998876643221 2333333333   233333333      2  3445667777776667


Q ss_pred             HHHHHhhhcCCCc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004          156 VCTLQILNQDETP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVL  234 (520)
Q Consensus       156 v~v~~il~~~~~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~~~~~l~  234 (520)
                      ..+.++.-..-.+ ++. +-.+...++..+++++.=.+..+..++..+.+.++.+.+.+.+.+.=+++|.++-.......
T Consensus       110 ggv~S~~~t~lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~  188 (319)
T COG0385         110 GGVASNAMTYLAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWV  188 (319)
T ss_pred             CchhHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666643221111 111 11223444555555544444333323222334556667777776666666666555554444


Q ss_pred             HH
Q 010004          235 KT  236 (520)
Q Consensus       235 ~~  236 (520)
                      ++
T Consensus       189 ~~  190 (319)
T COG0385         189 ER  190 (319)
T ss_pred             HH
Confidence            43

>COG2855 Predicted membrane protein [Function unknown]

Probab=93.08  E-value=1.8  Score=43.64  Aligned_cols=139  Identities=15%  Similarity=0.121  Sum_probs=78.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010004           42 WVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI  121 (520)
Q Consensus        42 ~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~  121 (520)
                      .+|.....+++|+++|..... ++ +-..-.++...    .+|..=+-.=|++++..++.+...+.+.... .++.++++
T Consensus        36 ~l~al~lAIllGi~l~~l~~~-~~-~~~~GI~fs~k----~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~-~~l~~t~~  108 (334)
T COG2855          36 GLSALTLAILLGILLGILPQI-PA-QTSAGITFSSK----KLLRLGIVLLGFRLTLSDIADVGGSGVLIIA-ITLSSTFL  108 (334)
T ss_pred             CchHHHHHHHHHHHHhccccc-hh-hhccchhhhHH----HHHHHHHHHHcceeeHHHHHHcCccHHHHHH-HHHHHHHH
Confidence            478899999999999932111 11 11111334443    4444444666999999999988887666543 33333444


Q ss_pred             HHHHHHHhhhccCCCCCcHHHHHHhh---hhcccccHHHHHHhhhcCCCcchhhhhhhhhhchhHHHHHHHHHHHHH
Q 010004          122 ITVGSWWLFPKLGFMGLSIQDYLALG---TIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQKI  195 (520)
Q Consensus       122 i~~~~~~l~~~~~~~~~~~~~all~G---ailsaTdpv~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~~  195 (520)
                      ++...--++      ++++..+++.|   +|+.+..-+++.++.|.. .++....+..-.+++- ++.++|=.+..+
T Consensus       109 ~~~~lg~~l------gld~~~a~Lia~GssICGasAiaA~~pvika~-~~eva~aIa~V~lfgt-ia~llyP~l~~~  177 (334)
T COG2855         109 FAYFLGKLL------GLDKKLALLIAAGSSICGASAIAATAPVIKAE-EEEVAVAIAVVVLFGT-LAMLLYPLLYPL  177 (334)
T ss_pred             HHHHHHHHh------CCCHHHHHHHHccchhhHHHHHHHhCCcCCCC-ccccceehhhHHHHHH-HHHHHHHHHHHH
Confidence            443333344      89999999988   445555555555566532 2233333333334443 444444444333

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=92.68  E-value=0.55  Score=43.89  Aligned_cols=129  Identities=16%  Similarity=0.238  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCC-----HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 010004           48 TAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVK-----KKQFFHNFLTIMMFGVIGVFISVSII  122 (520)
Q Consensus        48 ~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~-----~~~f~~~~~~il~la~~g~~i~~~~i  122 (520)
                      ..+++|+++|.....  +      .... +-..++.|-.++|..|.++-     .|++++..++++.+.+. +++..++.
T Consensus         3 ~~li~Gi~lG~~~~~--~------~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~-tIlGSllg   72 (191)
T PF03956_consen    3 IALILGILLGYFLRP--P------FSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLA-TILGSLLG   72 (191)
T ss_pred             eeHHHHHHHHHHhcc--c------cccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHH
Confidence            456788899864331  1      1111 33667888899999999984     33555555677766544 44445566


Q ss_pred             HHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCCCcchhhhhhhhhhchhHHHHHHHHHHHH
Q 010004          123 TVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAVQK  194 (520)
Q Consensus       123 ~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~~~~l~~ll~gEs~lND~~aivlf~~~~~  194 (520)
                      +..+..++      ++++.+++..|+=..==+-..  ..+.|...|.+.++-+=.-++-+.+++++.-.+..
T Consensus        73 g~l~~~ll------~~~~~~~lav~sG~GwYSlsg--~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P~~~r  136 (191)
T PF03956_consen   73 GLLASLLL------GLSLKESLAVASGFGWYSLSG--VLITQLYGPELGTIAFLSNLFREILAIILIPLLAR  136 (191)
T ss_pred             HHHHHHHh------cCCHHHHHHHHccCcHHHhHH--HHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666      899999999887664333222  22445566677777666666677777776666555

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=92.41  E-value=1.8  Score=49.98  Aligned_cols=71  Identities=10%  Similarity=0.178  Sum_probs=42.7

Q ss_pred             HHHhhHHHHHhhhhcCCHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHH
Q 010004           80 FIYLLPPIIFNAGFQVKKKQFFHN--FLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVC  157 (520)
Q Consensus        80 ~~~~L~~IlF~aG~~l~~~~f~~~--~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~  157 (520)
                      ..+++|+-....|+++|.+.+...  +..+..+.+++.+.-.+...+.. .+.      ++++.+++.+|.++++-.-+.
T Consensus       324 ~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a-~~~------g~~~~eal~lG~lm~~kG~~~  396 (832)
T PLN03159        324 SGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIA-FFY------TMPFREGITLGFLMNTKGLVE  396 (832)
T ss_pred             HHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH-HHh------CCCHHHHHHHHHHHhcccHHH
Confidence            457788888899999999887532  22222222222222222222222 233      899999999999998876443

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=90.92  E-value=2.9  Score=43.83  Aligned_cols=71  Identities=15%  Similarity=0.308  Sum_probs=48.3

Q ss_pred             HHH-HhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHH
Q 010004           79 FFI-YLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTV  156 (520)
Q Consensus        79 f~~-~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv  156 (520)
                      |.+ +++|+--...|+++|.+.+.+++..++.+....+..-.......++ .+      +++...++..|...++--..
T Consensus       273 ~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~-~~------g~~~~~~~~~g~~~~~~ge~  344 (397)
T COG0475         273 FGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAAR-LL------GFSKRLALGIGLLLRQGGEF  344 (397)
T ss_pred             HHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-HH------cCcHHHHHHHHhhhhhhhHH
Confidence            777 7888888899999999999999998666554444443333333333 33      67777777777776654443

>TIGR00808 malonate_madM malonate transporter, MadM subunit

Probab=90.80  E-value=7.7  Score=36.18  Aligned_cols=96  Identities=20%  Similarity=0.178  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhh-------HHHHHhhhhcCCHHHH
Q 010004           28 CLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLL-------PPIIFNAGFQVKKKQF  100 (520)
Q Consensus        28 ~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L-------~~IlF~aG~~l~~~~f  100 (520)
                      -+...++..+.| .++|.+...+++|+++.++.-....++. .+.  |-.+|.-+.|       =+-+-..+++.|.++.
T Consensus        26 ~~s~~lS~~lT~-Gr~hgSAIAI~lGL~lAy~gG~~TgG~k-Gla--Di~lfsGiglmGGaMlRDfAIvaTAf~v~~~e~  101 (254)
T TIGR00808        26 YVSHLLSKYLTK-GKLHGSAIAITMGLVLAYVGGVYTGGEK-GLA--DIAIFGGFGLMGGAMLRDLAIVATAFEVDVKEV  101 (254)
T ss_pred             HHHHHHHHHHhc-CCcchhHHHHHHHHHHHHHcccccCCcc-ccc--hhhhhcchhhhhhHHHHHHHHHHHhhcCcHHHH
Confidence            333334444433 3599999999999999876443332221 111  1112221111       1224678899999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004          101 FHNFLTIMMFGVIGVFISVSIITVGSW  127 (520)
Q Consensus       101 ~~~~~~il~la~~g~~i~~~~i~~~~~  127 (520)
                      ||....-..--++|+++++++....++
T Consensus       102 kkaG~~G~vsL~~G~v~~F~~Ga~vA~  128 (254)
T TIGR00808       102 KKAGKVGMVALLLGCVIPFVIGAMVAW  128 (254)
T ss_pred             HHcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887666667888888665444444

The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.

>COG2431 Predicted membrane protein [Function unknown]

Probab=90.75  E-value=2.1  Score=41.72  Aligned_cols=89  Identities=24%  Similarity=0.283  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCC-----HHHHHHhHHHHHHHHHHHHHHHH
Q 010004           45 ESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVK-----KKQFFHNFLTIMMFGVIGVFISV  119 (520)
Q Consensus        45 ~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~-----~~~f~~~~~~il~la~~g~~i~~  119 (520)
                      ..++..+.|++.|.+....        .. +++.-.++.|-.++|..|+++.     .|+..=| |..+.++ .-++++.
T Consensus       108 k~~~~vl~g~~~G~l~~~~--------~~-~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~-~i~ilss  176 (297)
T COG2431         108 KLLGVVLLGLALGLLTGSF--------LN-FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILA-FITLLSS  176 (297)
T ss_pred             HHHHHHHHHHHHHHHhccc--------cc-CchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHH-HHHHHHH
Confidence            3456777888888654421        11 2455667888899999999987     2233334 3344444 3455556


Q ss_pred             HHHHHHHHHhhhccCCCCCcHHHHHHhhhhc
Q 010004          120 SIITVGSWWLFPKLGFMGLSIQDYLALGTIF  150 (520)
Q Consensus       120 ~~i~~~~~~l~~~~~~~~~~~~~all~Gail  150 (520)
                      .+.|....+++      ++|+.+++.+++=.
T Consensus       177 liGG~iaa~~l------~lpl~~~lAmasG~  201 (297)
T COG2431         177 LIGGLIAAFLL------DLPLTTGLAMASGF  201 (297)
T ss_pred             HHHHHHHHHHH------hccHHHHHHHHhcc
Confidence            66677777776      89999888877655

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=89.99  E-value=6.7  Score=35.91  Aligned_cols=85  Identities=14%  Similarity=0.210  Sum_probs=54.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCH---HHHHHhHHHHHHHHHHHHHHH
Q 010004           42 WVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKK---KQFFHNFLTIMMFGVIGVFIS  118 (520)
Q Consensus        42 ~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~---~~f~~~~~~il~la~~g~~i~  118 (520)
                      .+-.+.+.+++|+++|..-...+...+   .. -++.+.++.|..-++..|++--.   +.++++..+...++++-+.++
T Consensus        22 ~LG~a~G~L~vgL~~G~~~~~~~~~~~---~~-~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~   97 (169)
T PF06826_consen   22 SLGAAGGVLFVGLILGALGRTGPIFLP---IS-APSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVP   97 (169)
T ss_pred             eccccHHHHHHHHHHHHhhhccCCCCC---cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            466777999999999975432111101   11 23456778888888888887754   345666666777777777776


Q ss_pred             HHHHHHHHHHhh
Q 010004          119 VSIITVGSWWLF  130 (520)
Q Consensus       119 ~~~i~~~~~~l~  130 (520)
                      .++.....++++
T Consensus        98 ~~~~~~~~~~~~  109 (169)
T PF06826_consen   98 LLIALVIGRYLF  109 (169)
T ss_pred             HHHHHHHHHHHc
Confidence            666555555455

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=89.09  E-value=26  Score=35.10  Aligned_cols=129  Identities=14%  Similarity=0.097  Sum_probs=81.0

Q ss_pred             HhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHH--HHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHH
Q 010004           37 LEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFF--IYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIG  114 (520)
Q Consensus        37 ~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~--~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g  114 (520)
                      .++.+++|.  +.|++=+++|.+++-+.+...+..=.+...+|.  ...+...+|-.|-++|.|+..+..++-..+-+.=
T Consensus         4 ~~~i~kiPG--G~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K   81 (314)
T PF03812_consen    4 KKTIEKIPG--GMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVK   81 (314)
T ss_pred             hHhhccCCC--ceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHH
Confidence            344455775  566777777776654333221111122222221  3456777999999999999988888876665555


Q ss_pred             HHHHHHHHHHHHHHhhhccCCC-C-CcHHHHHHhhhhcccccHHHHHHhhhcCCCc
Q 010004          115 VFISVSIITVGSWWLFPKLGFM-G-LSIQDYLALGTIFSSTDTVCTLQILNQDETP  168 (520)
Q Consensus       115 ~~i~~~~i~~~~~~l~~~~~~~-~-~~~~~all~GailsaTdpv~v~~il~~~~~~  168 (520)
                      +.+. +++++....+++.-|++ + +-=..++.+=+.++.+.+..-+++.+|++++
T Consensus        82 ~~~~-~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~  136 (314)
T PF03812_consen   82 FIIG-ALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDE  136 (314)
T ss_pred             HHHH-HHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCH
Confidence            5554 44566666666543321 1 1113466777888999999999999998876

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=88.72  E-value=34  Score=35.89  Aligned_cols=30  Identities=23%  Similarity=0.449  Sum_probs=21.9

Q ss_pred             HHHHHHHHHh-----hhcchhHHHHHHHhhhcccc
Q 010004          255 AYLSYILAEL-----LELSGILTVFFCGIFMSHYA  284 (520)
Q Consensus       255 ~~~~~~~ae~-----~g~Sgilav~~~Gl~~~~~~  284 (520)
                      ....|.+.+.     +.+...+.++++|+.++|..
T Consensus       228 i~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~  262 (398)
T TIGR00210       228 LLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL  262 (398)
T ss_pred             HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH
Confidence            4455555554     34788999999999999754

>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function

Probab=87.44  E-value=6.7  Score=39.52  Aligned_cols=138  Identities=19%  Similarity=0.250  Sum_probs=88.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhhccccCccccccCh--hHHHHHhhHHHHHhhhhcC--CHHHHHHhHHHHHHHHHHHHHHHH
Q 010004           44 NESITAILIGCVSGIIILSITKWKSSHILRFDE--ELFFIYLLPPIIFNAGFQV--KKKQFFHNFLTIMMFGVIGVFISV  119 (520)
Q Consensus        44 p~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~--~~f~~~~L~~IlF~aG~~l--~~~~f~~~~~~il~la~~g~~i~~  119 (520)
                      ..++.+++-|+++|.+..  +.+    ...+.|  +-.|.-.|++.+.+-|+.-  +.+++||..+....++++.=++..
T Consensus       177 ~~sv~LLlGgliIG~~~g--~~g----~~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a  250 (327)
T PF05982_consen  177 NKSVVLLLGGLIIGFLAG--PEG----VESIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLINA  250 (327)
T ss_pred             CchHHHHHHHHHHhheeC--ccc----hhhccchhhccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHH
Confidence            446778888999996421  111    112222  1145677888889988875  456788888888888777666665


Q ss_pred             HHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHHHhhhcCC---Ccchhhhh-hhh-hhchhHHHHHHHHHHHH
Q 010004          120 SIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDE---TPLLYSLV-FGE-GVVNDATSVVLFNAVQK  194 (520)
Q Consensus       120 ~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~~il~~~~---~~~l~~ll-~gE-s~lND~~aivlf~~~~~  194 (520)
                      .+.....+ ++      +++...+.+++.+.++-|=.++-+.+|.--   +|-+|-.. .|- ==+|=.++|.+|..+..
T Consensus       251 ~ig~~lg~-~~------gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~SLgiTFPfNi~iGIPLY~~la~  323 (327)
T PF05982_consen  251 LIGIGLGW-LL------GLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTASLGITFPFNILIGIPLYYALAQ  323 (327)
T ss_pred             HHHHHHHH-Hh------CCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHHHhcccchhHhhccHHHHHHHH
Confidence            54333333 44      899999999999998888888888877532   34343221 111 13677777777765443

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]

Probab=87.35  E-value=38  Score=34.86  Aligned_cols=61  Identities=18%  Similarity=0.302  Sum_probs=45.3

Q ss_pred             HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHh
Q 010004           79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLAL  146 (520)
Q Consensus        79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~  146 (520)
                      |.++..+-++--+=+.+|.+.+-|.........+.|++...+ .+...-.++      ++++.+.+++
T Consensus       112 FL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~-~g~lVG~~~------G~~~~d~~m~  172 (438)
T COG3493         112 FLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAA-VGILVGLLF------GLSFQDTMMY  172 (438)
T ss_pred             hHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHh------CCChHHeeee
Confidence            778888999999999999999998888777666666665443 344444455      8888877664

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=86.87  E-value=28  Score=36.13  Aligned_cols=96  Identities=15%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChh---HHHHHhhHHHHHhhhhcCCHHHHHHhH
Q 010004           29 LCLIVGHLLEE-NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEE---LFFIYLLPPIIFNAGFQVKKKQFFHNF  104 (520)
Q Consensus        29 ~~~~~~~~~~~-~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~---~f~~~~L~~IlF~aG~~l~~~~f~~~~  104 (520)
                      ++..+..++++ ...+|.-+..++.|+++-.+.......      ..|.+   .+....|-..+..+=.++|...+.++.
T Consensus       232 ~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~------~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a  305 (368)
T PF03616_consen  232 LGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKY------KIDRKTIDRISGISLDLFLAMALMSLKLWVLADYA  305 (368)
T ss_pred             HHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcc------cCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            33334444443 345888888888888887655433211      13332   366777888888888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010004          105 LTIMMFGVIGVFISVSIITVGSWWLF  130 (520)
Q Consensus       105 ~~il~la~~g~~i~~~~i~~~~~~l~  130 (520)
                      .+++.+-+.+++++.+..-++++..+
T Consensus       306 ~Plliil~~q~i~~~~f~~fv~fr~~  331 (368)
T PF03616_consen  306 LPLLIILAVQTILMVLFAYFVTFRVM  331 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            99998878888876655444444344

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=86.59  E-value=24  Score=31.75  Aligned_cols=109  Identities=11%  Similarity=0.013  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHH
Q 010004           26 ILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFL  105 (520)
Q Consensus        26 lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~  105 (520)
                      .+.++.+.+.++++.+ +|.  ..++..++.+.........+    .. -|+.+.......+=...|.+.+.+.+++..+
T Consensus         3 ~~~~~~~~g~l~~~l~-~Pa--~~llG~mi~~~~~~~~~~~~----~~-~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~   74 (156)
T TIGR03082         3 LLLVGLAGGLLASLLG-LPA--AWLLGPLLAGAVLSLAGGLE----IT-LPPWLLALAQVVIGILIGSRFTREVLAELKR   74 (156)
T ss_pred             HHHHHHHHHHHHHHHC-CCc--HHHHHHHHHHHHHHhcCCcc----CC-CCHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            3445556667776544 774  33444455554433322111    11 2445777777888889999999877665544


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhh
Q 010004          106 TIM--MFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTI  149 (520)
Q Consensus       106 ~il--~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Gai  149 (520)
                      ...  ......++..++..+...+...      ++++.+++ +|+.
T Consensus        75 ~~~~~l~~~~~~l~~~~~~~~~l~~~~------~~~~~ta~-La~~  113 (156)
T TIGR03082        75 LWPAALLSTVLLLALSALLAWLLARLT------GVDPLTAF-LATS  113 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHH-HHhC
Confidence            332  2223333333444444444444      78888885 4443

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>TIGR00698 conserved hypothetical integral membrane protein

Probab=86.42  E-value=41  Score=34.37  Aligned_cols=114  Identities=14%  Similarity=0.097  Sum_probs=63.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHH
Q 010004           42 WVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSI  121 (520)
Q Consensus        42 ~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~  121 (520)
                      .++..+..+++|+++|.......+.....-.++..+.+.++.    +-.-|.+++.+++.+.....+......+..+.+.
T Consensus        30 ~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~g----IVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~  105 (335)
T TIGR00698        30 ALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIG----ITLYGFRLTFPYIADVGPNEIVADTLILTSTFFL  105 (335)
T ss_pred             CCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHH----HHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            477777778888877753210000000000122223333433    3556999999999998887776655554444333


Q ss_pred             HHHHHHHhhhccCCCCCcHHHHHHhh---hhcccccHHHHHHhhhcC
Q 010004          122 ITVGSWWLFPKLGFMGLSIQDYLALG---TIFSSTDTVCTLQILNQD  165 (520)
Q Consensus       122 i~~~~~~l~~~~~~~~~~~~~all~G---ailsaTdpv~v~~il~~~  165 (520)
                      ......-.+      +++...++++|   +|+.++.-+++.++.|..
T Consensus       106 ~~~~g~k~l------~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~  146 (335)
T TIGR00698       106 TVFLGSSRL------KLDKQMSILLGAGSSICGAAAVAAIEPVIKAE  146 (335)
T ss_pred             HHHHHHHHh------CCChhHHHHHHcchhHHHHHHHHHhccccCCC
Confidence            233321223      67777777776   455566666666666643

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=86.20  E-value=3.4  Score=41.41  Aligned_cols=58  Identities=17%  Similarity=0.143  Sum_probs=42.0

Q ss_pred             hhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhh
Q 010004           83 LLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALG  147 (520)
Q Consensus        83 ~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~G  147 (520)
                      .+|...|.-|.+++.++..+...+.+.+++..++++.... ....-++      +.+-..+.+.|
T Consensus       197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~-~~i~rll------g~~~~~g~li~  254 (312)
T PRK12460        197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFN-IFADRLV------GGTGIAGAAAS  254 (312)
T ss_pred             eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHH-HHHHHHh------CCChhHHHHHH
Confidence            7788889999999999999999988888877776654433 2222333      55555666666

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=86.12  E-value=46  Score=34.65  Aligned_cols=86  Identities=15%  Similarity=0.165  Sum_probs=55.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHH
Q 010004           41 RWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVS  120 (520)
Q Consensus        41 ~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~  120 (520)
                      +++|..+..++.|+++...... .+...++    --+....+.+|.-++.-=++.|.|+.+|..++.+. ++....++++
T Consensus        23 ~~l~~~vl~~~~~~~lsnlgli-~~p~~s~----~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~-~F~~~~~g~v   96 (378)
T PF05684_consen   23 KYLPGAVLCYLLGMLLSNLGLI-DSPASSP----VYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL-AFLIGAVGTV   96 (378)
T ss_pred             hhcCHHHHHHHHHHHHHHCCCc-CCCCcch----HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH-HHHHHHHHHH
Confidence            5789999999898888854222 1111111    11347778888888888889999999999887554 3333334444


Q ss_pred             HHHHHHHHhhhc
Q 010004          121 IITVGSWWLFPK  132 (520)
Q Consensus       121 ~i~~~~~~l~~~  132 (520)
                      +.+...+++++.
T Consensus        97 iG~~va~~l~~~  108 (378)
T PF05684_consen   97 IGAVVAFLLFGG  108 (378)
T ss_pred             HHHHHHHHHHhh
Confidence            445556666654

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=85.33  E-value=18  Score=37.80  Aligned_cols=153  Identities=14%  Similarity=0.124  Sum_probs=87.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhc-
Q 010004           16 QVVPISLFVAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQ-   94 (520)
Q Consensus        16 ~~~~l~~~~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~-   94 (520)
                      +...+-.-..+-+....++.++++...+|.....++.=+++=. ....++ +.++-...-.+++..-+.+++++-.|.. 
T Consensus       244 ~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~-~~lvP~-~~e~~a~~~~~f~~~~lt~~lLvgiGv~~  321 (414)
T PF03390_consen  244 DFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKA-FGLVPE-SLEEGAKQWYKFFSKNLTWPLLVGIGVAY  321 (414)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3333433334455556677888877789988877655444321 111111 1111011112346678899999999999 


Q ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhh-hcc---cccHHHHHHhhhcCC-Cc-
Q 010004           95 VKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGT-IFS---STDTVCTLQILNQDE-TP-  168 (520)
Q Consensus        95 l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Ga-ils---aTdpv~v~~il~~~~-~~-  168 (520)
                      +|++++.+.+.....+-+..+++...+.+...-.++      ++...|+-.-+. +.+   -|-=+++++--++.+ .| 
T Consensus       322 ~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~------g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~LmpF  395 (414)
T PF03390_consen  322 TDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLV------GFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMPF  395 (414)
T ss_pred             CcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHhhhcccCCCCCCcchheehhhhcccccH
Confidence            999999998866555555555555555555444455      565555544444 333   355556666666555 33 


Q ss_pred             -chhhhhhh
Q 010004          169 -LLYSLVFG  176 (520)
Q Consensus       169 -~l~~ll~g  176 (520)
                       ++.+.+-|
T Consensus       396 AQIstRiGG  404 (414)
T PF03390_consen  396 AQISTRIGG  404 (414)
T ss_pred             HHHHHhhhh
Confidence             45544444

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=85.29  E-value=35  Score=34.66  Aligned_cols=108  Identities=10%  Similarity=0.000  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHHHHHh
Q 010004           24 VAILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQFFHN  103 (520)
Q Consensus        24 ~~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~f~~~  103 (520)
                      ..++..+...+++.+|.+ +|.  ..++..++.+..........    ..+ |+.+.......+=-..|.+.+.+.+++.
T Consensus       158 ~~l~~~~~~g~~l~~~l~-iPa--~~llGpml~~a~~~~~~~~~----~~~-P~~l~~~aqv~iG~~iG~~f~~~~l~~~  229 (318)
T PF05145_consen  158 ALLALAALAGGLLARRLR-IPA--PWLLGPMLVSAILNLFGGPS----FSL-PPWLVNAAQVLIGASIGSRFTRETLREL  229 (318)
T ss_pred             HHHHHHHHHHHHHHHHhC-CCc--HHHHHHHHHHHHHHHHhCCC----CCC-CHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            344445555566666544 774  33333444443333321111    222 4567777777888889999998877666


Q ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHH
Q 010004          104 FLTIM--MFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLA  145 (520)
Q Consensus       104 ~~~il--~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all  145 (520)
                      .+.+.  .......+..++..+...+.+.      ++++.++++
T Consensus       230 ~~~~~~~l~~~~~~l~~~~~~a~~l~~~~------~~~~~t~~L  267 (318)
T PF05145_consen  230 RRLLPPALLSTLLLLALCALFAWLLSRLT------GIDFLTALL  267 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence            55432  2222333333444455555554      788876654

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=85.14  E-value=36  Score=32.53  Aligned_cols=72  Identities=13%  Similarity=0.185  Sum_probs=46.0

Q ss_pred             HhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhc--ccccHHHHHHhhhcCC
Q 010004           89 FNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIF--SSTDTVCTLQILNQDE  166 (520)
Q Consensus        89 F~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Gail--saTdpv~v~~il~~~~  166 (520)
                      |..-+-=+++.+||||++++.-.+.|...+.......+.++       +++-.   +.-+++  |.|.|++ +.+-++.+
T Consensus        75 lAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~-------g~~~~---~~~Sl~PkSvTTpiA-m~vs~~iG  143 (230)
T COG1346          75 LAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF-------GLSPE---LILSLLPKSVTTPIA-MEVSESIG  143 (230)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHH---HHHHhcccccccHHH-HHHHHhcC
Confidence            33344457889999999999988888888766555555443       44433   223333  6677766 56666664


Q ss_pred             -Ccchh
Q 010004          167 -TPLLY  171 (520)
Q Consensus       167 -~~~l~  171 (520)
                       .|.+.
T Consensus       144 Gip~lt  149 (230)
T COG1346         144 GIPALT  149 (230)
T ss_pred             CchHHH
Confidence             66544

>TIGR00841 bass bile acid transporter

Probab=84.09  E-value=48  Score=33.05  Aligned_cols=70  Identities=20%  Similarity=0.134  Sum_probs=39.4

Q ss_pred             hhHHHHHhhhhcCCHHHHHHhHHH--HHHHHHH-HHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHHH
Q 010004           83 LLPPIIFNAGFQVKKKQFFHNFLT--IMMFGVI-GVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCTL  159 (520)
Q Consensus        83 ~L~~IlF~aG~~l~~~~f~~~~~~--il~la~~-g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v~  159 (520)
                      .+..++|..|.+++.+++++..+.  ....++. -.++.-++. +....++      +.+  ..+..|.++.+.-|.++.
T Consensus        13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~------~l~--~~~~~glvL~~~~P~~~~   83 (286)
T TIGR00841        13 LLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVF------KLP--PELAVGVLIVGCCPGGTA   83 (286)
T ss_pred             HHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHh------CCC--HHHHHHHHheeeCCCchH
Confidence            388899999999999999887762  2222222 222322222 2222223      333  455666666666665555


Q ss_pred             Hh
Q 010004          160 QI  161 (520)
Q Consensus       160 ~i  161 (520)
                      +.
T Consensus        84 s~   85 (286)
T TIGR00841        84 SN   85 (286)
T ss_pred             HH
Confidence            44

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=83.34  E-value=63  Score=33.90  Aligned_cols=154  Identities=12%  Similarity=0.095  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHhh-----cCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhcCCHHH
Q 010004           25 AILCLCLIVGHLLEE-----NRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQVKKKQ   99 (520)
Q Consensus        25 ~lL~~~~~~~~~~~~-----~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~l~~~~   99 (520)
                      .++.++..+++.+.+     ...+|.-+..++.|+++-.+.......+   ..+-.-+.+....|-..+-.|=.++|..+
T Consensus       222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~---~~~~~i~~I~~~sLdlfl~~AlmsL~L~~  298 (398)
T TIGR00210       222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPW---VAERAVSVIGNVSLSLFLAIALMSLQLWE  298 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccc---cchHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            344444445555443     2358999999999998887665432211   11111233667778888888889999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHH----HhhhhcccccHH--HHHHhhhcCCCc-chhh
Q 010004          100 FFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYL----ALGTIFSSTDTV--CTLQILNQDETP-LLYS  172 (520)
Q Consensus       100 f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~al----l~GailsaTdpv--~v~~il~~~~~~-~l~~  172 (520)
                      +.+++.+++.+.+.+++++.+..-+.++..+      +-++..+.    .+|--+.+|-.+  -.-++-++++.. +-.-
T Consensus       299 l~~~a~Plliil~~q~i~~~l~~~fv~fr~m------g~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~  372 (398)
T TIGR00210       299 LADLAGPIALILLVQVMFMALYAIFVTFRLM------GKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFI  372 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhc------cchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCccee
Confidence            9999999999999999998766555555555      22344443    455556555444  334566777744 4222


Q ss_pred             h--hhhhhhchhHHHHHH
Q 010004          173 L--VFGEGVVNDATSVVL  188 (520)
Q Consensus       173 l--l~gEs~lND~~aivl  188 (520)
                      +  +.| +.+-|.+-...
T Consensus       373 ivPlvg-af~id~~n~~~  389 (398)
T TIGR00210       373 VVPLVG-AFFIDIINALV  389 (398)
T ss_pred             hhhhHH-HHHHHHhhHHH
Confidence            2  232 45555444433

>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=82.31  E-value=3.2  Score=39.49  Aligned_cols=78  Identities=18%  Similarity=0.064  Sum_probs=64.9

Q ss_pred             HHHHhhHHHHHhhhhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcccccHHHH
Q 010004           79 FFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFSSTDTVCT  158 (520)
Q Consensus        79 f~~~~L~~IlF~aG~~l~~~~f~~~~~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~GailsaTdpv~v  158 (520)
                      .....+-++.-++|++++.|.+++.......+++....+.+..-+...++++      +.+|.++++.|.++.+..+...
T Consensus       159 l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l------~~~ii~~~l~g~v~~~i~~~~~  232 (252)
T KOG3826|consen  159 LRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLL------AGPIIWAFLLGIVIGSILWRFP  232 (252)
T ss_pred             hhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHh------ccchHHHhccccceeeeecCCc
Confidence            4456677888999999999999999999989888888887777666777776      8999999999999999888665


Q ss_pred             HHhh
Q 010004          159 LQIL  162 (520)
Q Consensus       159 ~~il  162 (520)
                      -+-.
T Consensus       233 r~~~  236 (252)
T KOG3826|consen  233 RPDY  236 (252)
T ss_pred             cccc
Confidence            5444

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=81.78  E-value=31  Score=35.34  Aligned_cols=143  Identities=14%  Similarity=0.118  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHhhccccCccccccChhHHHHHhhHHHHHhhhhc-CCHHHHHHh
Q 010004           25 AILCLCLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKSSHILRFDEELFFIYLLPPIIFNAGFQ-VKKKQFFHN  103 (520)
Q Consensus        25 ~lL~~~~~~~~~~~~~~~lp~~~~~ll~Gll~G~~~~~~~~~~~~~~~~~~~~~f~~~~L~~IlF~aG~~-l~~~~f~~~  103 (520)
                      .+.+....++.+++....+|..+..++.|+++-..  ...+.+.++-..--.+++...+..+++.--|+. .|++++.+.
T Consensus       186 ~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~--gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a  263 (347)
T TIGR00783       186 LFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAF--GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAA  263 (347)
T ss_pred             HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHH
Confidence            34444455666666433578888888888777532  111111111011111245566788888888987 899999998


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHH-HHhhhhcc---cccHHHHHHhhhcCC-Cc--chhhhhh
Q 010004          104 F-LTIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDY-LALGTIFS---STDTVCTLQILNQDE-TP--LLYSLVF  175 (520)
Q Consensus       104 ~-~~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~a-ll~Gails---aTdpv~v~~il~~~~-~~--~l~~ll~  175 (520)
                      + .+.+.+.+.+++- ..+.+...-.++      ++-..++ +.-|-+.+   -|-=+++++--|+.+ .|  ++.+.+-
T Consensus       264 ~t~~~vviiv~~Vlg-~ii~s~lvGKll------G~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~LmpfAQIstRiG  336 (347)
T TIGR00783       264 LSWQFVVICLSVVVA-MILGGAFLGKLM------GMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIPFAQISTRLG  336 (347)
T ss_pred             hchhHhhhHHHHHHH-HHHHHHHHHHHh------CCChHHHHHHHhhhccCCCCCCceeeeehhhhcccccHHHHHHHhh
Confidence            8 5544444333333 333333333344      5544444 44442332   344455555555554 33  3444444


Q ss_pred             h
Q 010004          176 G  176 (520)
Q Consensus       176 g  176 (520)
                      |
T Consensus       337 G  337 (347)
T TIGR00783       337 G  337 (347)
T ss_pred             h
Confidence            4

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	520
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 66/392 (16%), Positives = 120/392 (30%), Gaps = 125/392 (31%)

Query: 30  CLIVGHLLEENRWVNESITAILIGCVSGIIILSITKWKS----------SHI-------- 71
           CL+V   L  N    ++  A  + C     IL  T++K           +HI        
Sbjct: 246 CLLV---LL-NVQNAKAWNAFNLSCK----ILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 72  LRFDE--ELFFIYL------LPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISVSIIT 123
           L  DE   L   YL      LP        +V       N   +    +I   I   + T
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPR-------EVLT----TNPRRL---SIIAESIRDGLAT 343

Query: 124 VGSW--WLFPKLGFMGLSIQDYLALGTIFSSTDTVCTLQILNQDETPLLY-SL-VFGEGV 179
              W  W             +   L TI  S+     L +L   E   ++  L VF    
Sbjct: 344 ---WDNWKHV----------NCDKLTTIIESS-----LNVLEPAEYRKMFDRLSVFPPSA 385

Query: 180 -VNDATSVVLFNAVQKIDVR----ELNGKAALRIFRDFLYLFSTSTILGVTAGLLTALVL 234
            +      +++  V K DV     +L+  + +   +      ST +I  +   L   + L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV--EKQPKE--STISIPSIY--LELKVKL 439

Query: 235 KTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRI 294
           +  Y   H S+ +           Y + +  +   ++  +    F SH   H + +    
Sbjct: 440 ENEY-ALHRSIVD----------HYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHP 487

Query: 295 TTRHTFAMMSFIAETFIFL-----YVG---------MDAF-DIEKWRMSKLSFVT-SLGV 338
                  +   +   F FL     +           ++    ++ ++     ++  +   
Sbjct: 488 ---ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK----PYICDNDPK 540

Query: 339 YSALILMILLGRAAFVFPLSLLSNYMNSHRSP 370
           Y  L+  IL     F+  +       N   S 
Sbjct: 541 YERLVNAIL----DFLPKIE-----ENLICSK 563

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	520
1zcd_A	388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.39
2l0e_A	33	Sodium/hydrogen exchanger 1; transmembrane helix,	98.37
2htg_A	28	NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute;	98.08
2k3c_A	33	TMIX peptide; membrane peptide, dodecylphosphochol	97.99
1y4e_A	27	Sodium/hydrogen exchanger 1; NHE1 isoform, transme	97.47
2kbv_A	28	Sodium/hydrogen exchanger 1; transmembrane, peptid	97.29
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	93.81

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A

Probab=99.39  E-value=1.8e-12  Score=131.66  Aligned_cols=276  Identities=14%  Similarity=0.166  Sum_probs=180.7

Q ss_pred             HHHHHhhHHHHHhhhhcCCHHHH----HHhHH--HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHhhhhcc
Q 010004           78 LFFIYLLPPIIFNAGFQVKKKQF----FHNFL--TIMMFGVIGVFISVSIITVGSWWLFPKLGFMGLSIQDYLALGTIFS  151 (520)
Q Consensus        78 ~f~~~~L~~IlF~aG~~l~~~~f----~~~~~--~il~la~~g~~i~~~~i~~~~~~l~~~~~~~~~~~~~all~Gails  151 (520)
                      +.-+.++.+.+|.+|+|+|.+.+    ++..+  .....|+.|+++++.+     |+.+      +.+..++..-+++..
T Consensus        62 windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip~  130 (388)
T 1zcd_A           62 WINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIPA  130 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSSS
T ss_pred             HHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHHH
Confidence            46678899999999999988766    44433  3467788888887654     3444      445556778899999


Q ss_pred             cccHHHHHHhhhcCC--Cc-chhhhhhhhhhchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010004          152 STDTVCTLQILNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAVQKIDVRELNGKAALRIFRDFLYLFSTSTILGVTAGL  228 (520)
Q Consensus       152 aTdpv~v~~il~~~~--~~-~l~~ll~gEs~lND~~aivlf~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~~~G~~~G~  228 (520)
                      +||-+.++.++...+  .| .++..+.+-+++||..++++..++.+   ++.+   ......             .+...
T Consensus       131 ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~---~~~l~~-------------~~~~~  191 (388)
T 1zcd_A          131 ATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLS---MASLGV-------------AAVAI  191 (388)
T ss_dssp             CCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCC---HHHHHH-------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcc---HHHHHH-------------HHHHH
Confidence            999999999998864  55 58899999999999999999887743   2222   111110             01111


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHhhhcccccccCccchhhhHHHHHHHHH-HHH
Q 010004          229 LTALVLKTLYFGKHSSVREIALMVLMAYLSYILAELLELSGILTVFFCGIFMSHYAWHNMTDSSRITTRHTFAMMS-FIA  307 (520)
Q Consensus       229 ~~~~l~~~~~~~~~~~~~e~~l~l~~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~  307 (520)
                      ...+..+|..    .+.....+.+  ....++.++..|.+.++|.|++|+++.+...++.  ...++.++..+.+. +++
T Consensus       192 ~~~~~l~r~~----v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~--~~~~~le~~l~p~v~~~i  263 (388)
T 1zcd_A          192 AVLAVLNLCG----ARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGR--SPAKRLEHVLHPWVAYLI  263 (388)
T ss_dssp             HHHHHHHHTT----CCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSS--CHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHhc----chhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCC--CHHHHHHHHHHHHHHHHH
Confidence            1123333331    1122222222  3356777899999999999999999997543221  22344555555544 688


Q ss_pred             hHHH-HHHhccchhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCCCCCCCccchhhhee-cC
Q 010004          308 ETFI-FLYVGMDAFDIEKWRMSKLSFVTSLGVYSALILMILLGRAAFVFPLSLLSNYMN-SHRSPSISFNHQVVIWW-AG  384 (520)
Q Consensus       308 ~~~~-F~~~G~~i~~~~~w~~~~~~~~~~~~~~~~~~~~~~v~R~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~i~~-~G  384 (520)
                      -++| |...|+++.... .+..    ....  ...+.+..+++|.++++..+++..+.+ -+.+++.+|+|..-++. +|
T Consensus       264 lPlFaFanaGv~l~~~~-~~~l----~~~~--~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~g  336 (388)
T 1zcd_A          264 LPLFAFANAGVSLQGVT-LDGL----TSIL--PLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCG  336 (388)
T ss_dssp             HHHHHHHHCCCCCSSSC-CCTH----HHHS--STTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTT
T ss_pred             HHHHHHHhcCeeecccc-hhhc----cChH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhc
Confidence            8999 999999994311 0000    0011  112233458999999888787764332 13356899999977776 46


Q ss_pred             CchhHHHHHHhhhhh
Q 010004          385 LMRGAVSIALAFKQF  399 (520)
Q Consensus       385 lpRGav~~aLa~~~~  399 (520)
                       .|+.+++..+...+
T Consensus       337 -igftmsL~Ia~laf  350 (388)
T 1zcd_A          337 -IGFTMSIFIASLAF  350 (388)
T ss_dssp             -CCHHHHHHHHHHHS
T ss_pred             -cchHHHHHHHHHhc
Confidence             48999999887654

>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}

Probab=98.37  E-value=1.7e-08  Score=64.23  Aligned_cols=31  Identities=26%  Similarity=0.412  Sum_probs=27.7

Q ss_pred             cHHHHHHhhhhcccccHHHHHHhhhcCCCcc
Q 010004          139 SIQDYLALGTIFSSTDTVCTLQILNQDETPL  169 (520)
Q Consensus       139 ~~~~all~GailsaTdpv~v~~il~~~~~~~  169 (520)
                      +|..|++|||++|+|||+++++++|+.+.|+
T Consensus         2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~   32 (33)
T 2l0e_A            2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK   32 (33)
T ss_dssp             CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence            4566899999999999999999999998775

>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}

Probab=98.08  E-value=2.3e-07  Score=56.06  Aligned_cols=23  Identities=57%  Similarity=0.886  Sum_probs=21.4

Q ss_pred             cchhhhhhhhhhchhHHHHHHHH
Q 010004          168 PLLYSLVFGEGVVNDATSVVLFN  190 (520)
Q Consensus       168 ~~l~~ll~gEs~lND~~aivlf~  190 (520)
                      ++++.+++|||++||++++++|+
T Consensus         4 ~~L~~lvfGESllNDavaiVlf~   26 (28)
T 2htg_A            4 ELLHILVFGESLLNDAVTVVLYK   26 (28)
T ss_dssp             STTHHHHTTTTTTTTTTTTTTTT
T ss_pred             ceEEEEEEeeeeecccEEEEEEe
Confidence            47999999999999999999985

>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}

Probab=97.99  E-value=5.7e-08  Score=62.10  Aligned_cols=31  Identities=35%  Similarity=0.682  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhhhcchhHHHHHHHhhhcccc
Q 010004          254 MAYLSYILAELLELSGILTVFFCGIFMSHYA  284 (520)
Q Consensus       254 ~~~~~~~~ae~~g~Sgilav~~~Gl~~~~~~  284 (520)
                      ++|++|.+||.+|+||++|+++||++++||.
T Consensus         2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~   32 (33)
T 2k3c_A            2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK   32 (33)
T ss_dssp             CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred             hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence            4688999999999999999999999999885

>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}

Probab=97.47  E-value=6.2e-06  Score=49.34  Aligned_cols=25  Identities=40%  Similarity=1.042  Sum_probs=22.9

Q ss_pred             cChhHHHHHhhHHHHHhhhhcCCHH
Q 010004           74 FDEELFFIYLLPPIIFNAGFQVKKK   98 (520)
Q Consensus        74 ~~~~~f~~~~L~~IlF~aG~~l~~~   98 (520)
                      +++++|+.++||||+|++||+|+.|
T Consensus         2 ~~~~~FF~~LLPPII~~aGy~l~~r   26 (27)
T 1y4e_A            2 LQSDVFFLFLLPPIILDAGYFLPLR   26 (27)
T ss_dssp             CCSCSSHHHHSCCSSHHHHTTGGGG
T ss_pred             CccceeeeeccCccEeeccccccCC
Confidence            5788999999999999999999876

>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}

Probab=97.29  E-value=7.6e-05  Score=45.20  Aligned_cols=23  Identities=35%  Similarity=0.704  Sum_probs=20.9

Q ss_pred             cchhhheecCCchhHHHHHHhhhh
Q 010004          375 NHQVVIWWAGLMRGAVSIALAFKQ  398 (520)
Q Consensus       375 ~~~~~i~~~GlpRGav~~aLa~~~  398 (520)
                      ++|++|+|+|+ ||+++++|++..
T Consensus         2 ~~Q~i~~~~GL-RGAvafaL~~~l   24 (28)
T 2kbv_A            2 KDQFIIAYGGL-RGAIAFSLGYLL   24 (28)
T ss_dssp             CHHHHTTTTSS-CHHHHHHHHHHH
T ss_pred             CceeEEEeecc-hHHHHHHHHHhc
Confidence            57999999998 999999999865

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=93.81  E-value=5.6  Score=39.20  Aligned_cols=26  Identities=31%  Similarity=0.551  Sum_probs=21.4

Q ss_pred             HHHHhhHHHHHhhhhcCCHHHHHHhH
Q 010004           79 FFIYLLPPIIFNAGFQVKKKQFFHNF  104 (520)
Q Consensus        79 f~~~~L~~IlF~aG~~l~~~~f~~~~  104 (520)
                      ....++..++|..|.+++.+++++..
T Consensus        44 ~i~~~l~~~mf~~G~~l~~~~l~~~~   69 (332)
T 3zux_A           44 YIPWLLGIIMFGMGLTLKPSDFDILF   69 (332)
T ss_dssp             GHHHHHHHHHHHHHHHCCGGGGHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            34568899999999999999998443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00