Citrus Sinensis ID: 010101

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MEVAAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHccccccEEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHccccEEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHccccEEEEEcccccccHHHccccccccccccccccccccccccHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHcccccccEEEEccccHHHHHHHHccccHHHHHHccccEEEEcccccEEEEEcccHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccccccccccccccccccEEEEccccccccccccccccccccccccEEEEEcccccccHHHHHHHHcccEEEccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHcccccEEEEEccccccHHHHEcccccccccccccccccccccccHHHHHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccccccEEEccccHHHHHHHHHHccHHHHHHccEEEEEEccccccEEccccHHHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHcccccccHHHHHHHccccccEEEEccccccccccccccccHHHcccccEEEEEEEcccccHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MEVAAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDsmefshisevdkliqhptlpaiVSYRLkssrkssdeaCKNTCLQVLRRALDLDVEFVEMDYevasdplmsEIIYSRSNTKIIVSSylngggkpttekLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSrglisqllgpkfggflvygslggksvpglptlvSLKQVYQlehinpdtkifglvsnpvghskgpilhnpafrhtrfngiyvpMLVDDVKEFFRtysgtdfagfsvgiphkepavaccdevhplaksigavntiirrpidgklvgyntDCESAISAIEDALRErqgingvashtspiaGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEylheffpekGMILANAsaigmepnsdqspvpkEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQfrlftgglapeDFMRKLVLEQF
Flexible Loop (DISEMBL)
mevaaknsllvCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEvdkliqhptlPAIVSYRLKssrkssdeacKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAksigavntiirrpidgkLVGYNTDCESAISAIEDALRERQGINGvashtspiAGKIFVLVGAGGAGRALafgaksrgaRVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF
Low Complexity Region (SEG)
MEVAAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIfvlvgaggagralafgaKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF
Disordered region (IsUnstruct)
***********************************DLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRL*********ACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA***************ALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV****
Disordered Region (DISOPRED)
*****KN***VCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMS***YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF
Disordered Region (DISEMBL)
MEVAAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRL**********CKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF
Disordered Region (DISPRO)
***AAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRE***********SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVAAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	518	2.2.26 [Sep-21-2011]
Q9SQT8	603	Bifunctional 3-dehydroqui	yes	no	0.978	0.840	0.472	1e-121
A9VHW1	277	Shikimate dehydrogenase O	yes	no	0.513	0.960	0.340	1e-40
Q818D0	277	Shikimate dehydrogenase O	yes	no	0.509	0.953	0.344	3e-40
B7HCW1	277	Shikimate dehydrogenase O	yes	no	0.509	0.953	0.344	3e-40
B7IYI7	277	Shikimate dehydrogenase O	yes	no	0.509	0.953	0.344	4e-40
C3L5T8	277	Shikimate dehydrogenase O	yes	no	0.509	0.953	0.344	9e-40
B9IYA1	277	Shikimate dehydrogenase O	yes	no	0.513	0.960	0.347	1e-39
B7HPN3	277	Shikimate dehydrogenase O	yes	no	0.513	0.960	0.347	1e-39
Q6HDI8	277	Shikimate dehydrogenase O	yes	no	0.509	0.953	0.344	2e-39
Q634K8	277	Shikimate dehydrogenase O	yes	no	0.509	0.953	0.344	2e-39

>sp|Q9SQT8|DHQSD_ARATH Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1

 Score =  435 bits (1119), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/512 (47%), Positives = 342/512 (66%), Gaps = 5/512 (0%)

Query: 6   KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSM-EFSHISEVDKLIQHPTLPA 64
           KN  L+C  +  ++ ++M     +A   GADLVE+ +D + +F+ + ++  +I+   LP 
Sbjct: 91  KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 150

Query: 65  IVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKI 124
           + +YR K       E  +N    VLR A++L  ++++++ +VAS+ + S         K+
Sbjct: 151 LFTYRPKW-EGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKV 209

Query: 125 IVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIA 184
           IVSS+ N    P+ E L  ++A +Q TGAD++K+      I D+A +F + +  QVP I 
Sbjct: 210 IVSSH-NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIG 268

Query: 185 LAVGSRGLISQLLGPKFGGFLVYGSLGGKSV--PGLPTLVSLKQVYQLEHINPDTKIFGL 242
           L +G RGL+S++L  KFGG+L +G+L    V  PG PT+  L  +Y    I PDTK++G+
Sbjct: 269 LVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGI 328

Query: 243 VSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPA 302
           +  PV HSK PI+HN AF+   FNG+YV +LVD++  F + YS +DFAGFS  IPHKE A
Sbjct: 329 IGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAA 388

Query: 303 VACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHT 362
           + CCDEV PLAKSIGAVNTI+RR  DGKL+GYNTDC  +ISAIED LR     + V S +
Sbjct: 389 LQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSS 448

Query: 363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
           SP+A K  V++GAGGAG+ALA+GAK +GA+V+I NR YERA  LA+A+ G+AL    L  
Sbjct: 449 SPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDN 508

Query: 423 FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV 482
           + PE GM+LAN +++GM+PN +++P+ K+ALK Y LVFDAVYTPR TRLLREA E GA  
Sbjct: 509 YHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAIT 568

Query: 483 VSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
           VSG EMF+RQA  QF +FTG  AP++   +++
Sbjct: 569 VSGSEMFVRQAYEQFEIFTGLPAPKELYWQIM 600

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5

>sp|A9VHW1|AROE_BACWK Shikimate dehydrogenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=aroE PE=3 SV=1

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 158/288 (54%), Gaps = 22/288 (7%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTDFAGFSVG 295
           +++G++ NP+GHS  P++HN AF H   +  Y+  LV++  + E  +       +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYLAFLVEEEALGEAVKGLKALGISGFNVT 62

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
            PHK   +   DE+ PLA+ IGAVNT++ R  DGKL+GYNTD    + A++    +    
Sbjct: 63  TPHKVAIMEYLDEIAPLARQIGAVNTVVHR--DGKLIGYNTDGIGFVRALQSISED---- 116

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKAL----ADAV 410
                   P+  K  +L+GAGGA RA+ F     G + I I NR  ++AK L     + V
Sbjct: 117 --------PLQEKRILLIGAGGASRAIYFSLADVGVKEIDIANRTRDKAKNLISGCMENV 168

Query: 411 SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
           +  AL  E   E   E  +I+   + IGM P+ + +P+   +LK   +V D +Y P  T+
Sbjct: 169 NSHALSLECAAENQGEYDIII-QTTTIGMHPHVEYTPLEIRSLKQGTIVSDIIYNPFETK 227

Query: 471 LLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           +L +A E GA + +G++MF+ Q    F ++TG +   D M++LV+ + 
Sbjct: 228 ILGDAKEQGAIIQNGIDMFVYQGALAFEMWTGCVPNIDRMKQLVMREL 275

Bacillus weihenstephanensis (strain KBAB4) (taxid: 315730)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q818D0|AROE_BACCR Shikimate dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=aroE PE=3 SV=1

 Score =  167 bits (422), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 159/290 (54%), Gaps = 26/290 (8%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTDFAGFSVG 295
           +++G++ NP+GHS  P++HN AF H   +  Y   LV++  + E  R       +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVEEELLGEAVRGLKALGISGFNVT 62

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
            PHK   +   DE+ PLA+ IGAVNT++ +  DG+L+GYNTD    + A++    E    
Sbjct: 63  TPHKVAIMEYLDEIDPLARKIGAVNTVVHK--DGRLIGYNTDGIGFVRALQSISNE---- 116

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADA----V 410
                   P+ GK  +L+G+GGA RA+ F     G + I + NR  ++AK L  A    V
Sbjct: 117 --------PLQGKRILLLGSGGASRAIYFSLADVGVKEIDVANRTVDKAKELIAARTADV 168

Query: 411 SGEALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN 468
           +  AL  E   E   E+G   I+   + IGM P+ + +P+   +LK   +V D +Y P  
Sbjct: 169 NSVALSLEKATE---EQGNYDIIIQTTTIGMHPHVEHTPLQICSLKKGTIVSDIIYNPFE 225

Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           T++L EA E GA + +G++MF+ Q    F ++TG     + M++LV+E+ 
Sbjct: 226 TKILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGRTPNIERMKQLVIEKL 275

Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|B7HCW1|AROE_BACC4 Shikimate dehydrogenase OS=Bacillus cereus (strain B4264) GN=aroE PE=3 SV=1

 Score =  167 bits (422), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 159/290 (54%), Gaps = 26/290 (8%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTDFAGFSVG 295
           +++G++ NP+GHS  P++HN AF H   +  Y   LV++  + E  R       +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVEEELLGEAVRGLKALGISGFNVT 62

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
            PHK   +   DE+ PLA+ IGAVNT++ +  DG+L+GYNTD    + A++    E    
Sbjct: 63  TPHKVAIMEYLDEIDPLARKIGAVNTVVHK--DGRLIGYNTDGIGFVRALQSISNE---- 116

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADA----V 410
                   P+ GK  +L+G+GGA RA+ F     G + I + NR  ++AK L  A    V
Sbjct: 117 --------PLQGKRILLLGSGGASRAIYFSLADVGVKEIDVANRTVDKAKELIAARTADV 168

Query: 411 SGEALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN 468
           +  AL  E   E   E+G   I+   + IGM P+ + +P+   +LK   +V D +Y P  
Sbjct: 169 NSVALSLEKATE---EQGNYDIIIQTTTIGMHPHVEHTPLQICSLKKGTIVSDIIYNPFE 225

Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           T++L EA E GA + +G++MF+ Q    F ++TG     + M++LV+E+ 
Sbjct: 226 TKILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGRTPNIERMKQLVIEKL 275

Bacillus cereus (strain B4264) (taxid: 405532)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|B7IYI7|AROE_BACC2 Shikimate dehydrogenase OS=Bacillus cereus (strain G9842) GN=aroE PE=3 SV=1

 Score =  166 bits (420), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 159/290 (54%), Gaps = 26/290 (8%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTDFAGFSVG 295
           +++G++ NP+GHS  P++HN AF H   +  Y   LV++  + E  R       +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNNAFEHLNMDAHYHAFLVEEEVLGEAVRGLKALGISGFNVT 62

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
            PHK   +   DE+ PLA+ IGAVNT++ +  +G+L+GYNTD    + A++    E    
Sbjct: 63  TPHKVAIMEYLDEIDPLARKIGAVNTVVHK--NGRLIGYNTDGIGFVRALQSISHE---- 116

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADA----V 410
                   P+ GK  +L+GAGGA RA+ F     G + I + NR  ++AK L  A    V
Sbjct: 117 --------PLQGKRILLLGAGGASRAIYFSLADVGVKEIDVANRTVDKAKELIAARTADV 168

Query: 411 SGEALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN 468
           +  AL  E   E   E+G   I+   + IGM P+ + +P+   +LK   +V D +Y P  
Sbjct: 169 NSVALSLEKATE---EQGNYDIIIQTTTIGMHPHVEHTPLQICSLKKGTIVSDIIYNPFE 225

Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           T++L EA E GA + +G++MF+ Q    F ++TG +     M++LV+E+ 
Sbjct: 226 TKILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGSVPNIGRMKQLVIEKL 275

Bacillus cereus (strain G9842) (taxid: 405531)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C3L5T8|AROE_BACAC Shikimate dehydrogenase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=aroE PE=3 SV=1

 Score =  165 bits (417), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 156/290 (53%), Gaps = 26/290 (8%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTDFAGFSVG 295
           +++G++ NP+GHS  P++HN AF H + +  Y   LV +  + E  R       +GF+V 
Sbjct: 3   RLYGVIGNPIGHSLSPVMHNDAFEHLKMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
            PHK   +   DE+ PLAK IGAVNT++ +  DGKL+GYNTD    + A++    E    
Sbjct: 63  TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRALQSISSE---- 116

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADA----V 410
                   P+  K  +L+GAGGA RA+ F     G + I + NR  ++AK L  A    V
Sbjct: 117 --------PLQEKRILLLGAGGASRAIYFSLADAGVKEIDVANRTVDKAKELIAACTATV 168

Query: 411 SGEALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN 468
              AL  E   +   E+G   I+   + IGM P  + +P+   +LK   +V D +Y P  
Sbjct: 169 HSVALSLE---KATKEQGNYDIIIQTTTIGMHPRVEHTPLQISSLKKGTIVSDIIYNPFE 225

Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           T++L EA E GA + +G++MF+ Q    F ++TG +   + M++LV+ + 
Sbjct: 226 TKILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGCVPNIERMKQLVIRKL 275

Bacillus anthracis (strain CDC 684 / NRRL 3495) (taxid: 568206)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|B9IYA1|AROE_BACCQ Shikimate dehydrogenase OS=Bacillus cereus (strain Q1) GN=aroE PE=3 SV=1

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/288 (34%), Positives = 152/288 (52%), Gaps = 22/288 (7%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTDFAGFSVG 295
           +++G++ NP+GHS  P++HN AF H   +  Y   LV +  + E  R       +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
            PHK   +   DE+ PLAK IGAVNT++ +  DGKL+GYNTD    + A++    E    
Sbjct: 63  TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVKALQSISSE---- 116

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADA----V 410
                   P+  K  +L+GAGGA RA+ F     G + I + NR  ++AK L  A    V
Sbjct: 117 --------PLQEKRILLLGAGGASRAIYFSLADVGVKEIDVANRTVDKAKELITACTATV 168

Query: 411 SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
              AL  E   E   E   I+   + IGM P  + +P+   +LK   +V D +Y P  T+
Sbjct: 169 HSVALSLEEATEE-QENYDIIIQTTTIGMHPRVEHTPLQISSLKKGTIVSDIIYNPFETK 227

Query: 471 LLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           +L EA E GA + +G++MF+ Q    F ++TG     + M++LV+ + 
Sbjct: 228 ILCEAKEQGAMIQNGIDMFVYQGALAFEMWTGRTPNIERMKQLVIRKL 275

Bacillus cereus (strain Q1) (taxid: 361100)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|B7HPN3|AROE_BACC7 Shikimate dehydrogenase OS=Bacillus cereus (strain AH187) GN=aroE PE=3 SV=1

 Score =  164 bits (416), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/288 (34%), Positives = 152/288 (52%), Gaps = 22/288 (7%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTDFAGFSVG 295
           +++G++ NP+GHS  P++HN AF H   +  Y   LV +  + E  R       +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
            PHK   +   DE+ PLAK IGAVNT++ +  DGKL+GYNTD    + A++    E    
Sbjct: 63  TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVKALQSISSE---- 116

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADA----V 410
                   P+  K  +L+GAGGA RA+ F     G + I + NR  ++AK L  A    V
Sbjct: 117 --------PLQEKRILLLGAGGASRAIYFSLADVGVKEIDVANRTVDKAKELITACTATV 168

Query: 411 SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
              AL  E   E   E   I+   + IGM P  + +P+   +LK   +V D +Y P  T+
Sbjct: 169 HSVALSLEEATEE-QENYDIIIQTTTIGMHPRVEHTPLQISSLKKGTIVSDIIYNPFETK 227

Query: 471 LLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           +L EA E GA + +G++MF+ Q    F ++TG     + M++LV+ + 
Sbjct: 228 ILCEAKEQGAMIQNGIDMFVYQGALAFEMWTGRTPNIERMKQLVIRKL 275

Bacillus cereus (strain AH187) (taxid: 405534)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q6HDI8|AROE_BACHK Shikimate dehydrogenase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=aroE PE=3 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 155/290 (53%), Gaps = 26/290 (8%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTDFAGFSVG 295
           +++G++ NP+GHS  P++HN AF H   +  Y   LV +  + E  R       +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
            PHK   +   DE+ PLAK IGAVNT++ +  DGKL+GYNTD    + A++    E    
Sbjct: 63  TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRALQSISSE---- 116

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADA----V 410
                   P+  K  +L+GAGGA RA+ F     G + I + NR  ++AK L  A    V
Sbjct: 117 --------PLQEKRILLLGAGGASRAIYFSLADAGVKEIDVANRTVDKAKELIAACTATV 168

Query: 411 SGEALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN 468
              AL  E   +   E+G   I+   + IGM P  + +P+   +LK   +V D +Y P  
Sbjct: 169 HSVALSLE---KATKEQGSYDIIIQTTTIGMHPRVEHTPLQISSLKKGTIVSDIIYNPFE 225

Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           T++L EA E GA + +G++MF+ Q    F ++TG +   + M++LV+ + 
Sbjct: 226 TKILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGCVPNIERMKQLVIRKL 275

Bacillus thuringiensis subsp. konkukian (strain 97-27) (taxid: 281309)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q634K8|AROE_BACCZ Shikimate dehydrogenase OS=Bacillus cereus (strain ZK / E33L) GN=aroE PE=3 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/290 (34%), Positives = 155/290 (53%), Gaps = 26/290 (8%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTDFAGFSVG 295
           +++G++ NP+GHS  P++HN AF H   +  Y   LV +  + E  R       +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
            PHK   +   DE+ PLAK IGAVNT++ +  DGKL+GYNTD    + A++    E    
Sbjct: 63  TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRALQSISNE---- 116

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADA----V 410
                   P+  K  +L+GAGGA RA+ F     G + I + NR  ++AK L  A    V
Sbjct: 117 --------PLQEKRILLLGAGGASRAIYFSLADVGVKEIDVANRTVDKAKELIAACTATV 168

Query: 411 SGEALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN 468
              AL  E   +   E+G   I+   + IGM P  + +P+   +LK   +V D +Y P  
Sbjct: 169 HSVALSLE---KATKEQGNYDIIIQTTTIGMHPRVEHTPLQISSLKKGTIVSDIIYNPFE 225

Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           T++L EA E GA + +G++MF+ Q    F ++TG +   + M++LV+ + 
Sbjct: 226 TKILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGCVPNIERMKQLVIRKL 275

Bacillus cereus (strain ZK / E33L) (taxid: 288681)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
255559348	515	shikimate dehydrogenase, putative [Ricin	0.994	1.0	0.771	0.0
224128592	504	dehydroquinate dehydratase/ shikimate de	0.972	1.0	0.769	0.0
255542470	519	shikimate dehydrogenase, putative [Ricin	0.982	0.980	0.575	1e-156
116787099	514	unknown [Picea sitchensis]	0.980	0.988	0.566	1e-155
224130894	518	dehydroquinate dehydratase/ shikimate de	0.980	0.980	0.571	1e-154
225451144	519	PREDICTED: bifunctional 3-dehydroquinate	0.986	0.984	0.554	1e-153
57920902	521	3-dehydroquinate dehydratase / shikimate	0.986	0.980	0.565	1e-153
224125426	518	dehydroquinate dehydratase/ shikimate de	0.982	0.982	0.563	1e-153
356504076	524	PREDICTED: bifunctional 3-dehydroquinate	0.986	0.975	0.551	1e-147
224128596	337	predicted protein [Populus trichocarpa]	0.650	1.0	0.820	1e-147

>gi|255559348|ref|XP_002520694.1| shikimate dehydrogenase, putative [Ricinus communis] gi|223540079|gb|EEF41656.1| shikimate dehydrogenase, putative [Ricinus communis]

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/516 (77%), Positives = 455/516 (88%), Gaps = 1/516 (0%)

Query: 3   VAAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTL 62
           +A +N+LLVCT LECET  EM + +E+A+ EGADLVEL +DSM FSHIS+V+KLI+  TL
Sbjct: 1   MAFQNNLLVCTPLECETAGEMLSCMEKARGEGADLVELRVDSMSFSHISQVEKLIKLRTL 60

Query: 63  PAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNT 122
           PAIVS+R K+S+ SS+   K TCLQVL  ALDLDVEFVEM+YEVASD  M+E IY+RS+ 
Sbjct: 61  PAIVSFRPKTSKISSNGDSKKTCLQVLSLALDLDVEFVEMEYEVASDVSMAEYIYNRSSG 120

Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPL 182
           K+IVSSY+NGG KP+ EKLG++IA +Q+TGADV+KL I VD ITDLAPVF+ML HCQVPL
Sbjct: 121 KLIVSSYVNGG-KPSAEKLGNLIANLQSTGADVIKLVINVDYITDLAPVFKMLAHCQVPL 179

Query: 183 IALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGL 242
           IALAVGSRGLISQLLGPKFGGFLVYGSL  K+VPG+PTL SL+ VY+LE+IN DTK+FGL
Sbjct: 180 IALAVGSRGLISQLLGPKFGGFLVYGSLRDKAVPGMPTLFSLRHVYKLEYINSDTKVFGL 239

Query: 243 VSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPA 302
           +SNPVGHSKGPILHNPAFRHT +NGIYVPM VDD+KEFFRTY+ TDFAGFSVGIPHKE A
Sbjct: 240 ISNPVGHSKGPILHNPAFRHTGYNGIYVPMQVDDIKEFFRTYTSTDFAGFSVGIPHKEAA 299

Query: 303 VACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHT 362
           V+CCDEVHPLAKSIGAVNTI+RRP DGKLVGYNTDCE++I+AIEDALRER+  N  A  T
Sbjct: 300 VSCCDEVHPLAKSIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDALRERRPTNRGALDT 359

Query: 363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
           SP+AGK FVL+GAGGAGRALAFGA SRGARV++FNRN+ERAK+LA+AVSGEAL ++ L  
Sbjct: 360 SPLAGKTFVLIGAGGAGRALAFGASSRGARVVVFNRNFERAKSLANAVSGEALPYKALDR 419

Query: 423 FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV 482
           F  E  MILANASA+GMEPN+ QSPV KEALK+YELVFDAVYTPRNTRLL+EA EVGA V
Sbjct: 420 FQRENDMILANASAVGMEPNTHQSPVSKEALKSYELVFDAVYTPRNTRLLQEAKEVGAVV 479

Query: 483 VSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           VSGVEMFIRQALGQFRLFTGGLAPE FMRKLVLEQF
Sbjct: 480 VSGVEMFIRQALGQFRLFTGGLAPEAFMRKLVLEQF 515

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128592|ref|XP_002320370.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222861143|gb|EEE98685.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/516 (76%), Positives = 450/516 (87%), Gaps = 12/516 (2%)

Query: 3   VAAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTL 62
           +A KN+LLVCT LECET  EM +S+++A+ EGADL EL +DS+ FSH SEV+KLI+  TL
Sbjct: 1   MAFKNNLLVCTPLECETAGEMLSSMKRAETEGADLTELRLDSLSFSHNSEVEKLIKQRTL 60

Query: 63  PAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNT 122
           P+IVS+RL+ SR SS++  KNTCLQVLR A DL+VEFVEMDYEVAS+  M+E +Y+RSNT
Sbjct: 61  PSIVSFRLEPSRISSNKDRKNTCLQVLRLAFDLNVEFVEMDYEVASEDDMAEYVYNRSNT 120

Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPL 182
           K+IVSSY+NG  KP+ E+LG +IACMQ+TGADV+KL + V+ ITDLAPVF MLTHCQ+PL
Sbjct: 121 KLIVSSYVNGR-KPSAEELGYLIACMQSTGADVLKLVLDVEKITDLAPVFTMLTHCQIPL 179

Query: 183 IALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGL 242
           IALAVGSRGLISQLLGPKFGGFLVYGSL  K+VPG+PTL+SL+Q+Y+LE+IN DTK+FGL
Sbjct: 180 IALAVGSRGLISQLLGPKFGGFLVYGSLSDKAVPGMPTLLSLRQIYKLEYINADTKVFGL 239

Query: 243 VSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPA 302
           +SNPVGHSKGP+LHNPAFRHT +NGIYVPM VDDVKEFFRTY+ +DFAGFSVGIPHKE A
Sbjct: 240 ISNPVGHSKGPVLHNPAFRHTGYNGIYVPMQVDDVKEFFRTYTSSDFAGFSVGIPHKEAA 299

Query: 303 VACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHT 362
           V CCDEVHPLAKSIGAVNTI+RRP DGKLVGYNTDC+++ISAIEDAL             
Sbjct: 300 VGCCDEVHPLAKSIGAVNTIVRRPTDGKLVGYNTDCDASISAIEDAL-----------TA 348

Query: 363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
           SP++GK FVL+GAGGAGRALAFGAKSRGARVIIFNRNYERA+ALA AVSGEAL +E L  
Sbjct: 349 SPLSGKTFVLIGAGGAGRALAFGAKSRGARVIIFNRNYERARALAKAVSGEALPYESLDR 408

Query: 423 FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV 482
           F P  GMILANASAIGMEPNSDQSPV KE LKA ELVFDAVYTPRNTRLLREA EVGA V
Sbjct: 409 FRPVNGMILANASAIGMEPNSDQSPVSKEILKACELVFDAVYTPRNTRLLREAKEVGAVV 468

Query: 483 VSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           VSGVEMFIRQALGQFRLFTGGLAPE FMRKLVLEQF
Sbjct: 469 VSGVEMFIRQALGQFRLFTGGLAPEAFMRKLVLEQF 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542470|ref|XP_002512298.1| shikimate dehydrogenase, putative [Ricinus communis] gi|223548259|gb|EEF49750.1| shikimate dehydrogenase, putative [Ricinus communis]

 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 296/514 (57%), Positives = 385/514 (74%), Gaps = 5/514 (0%)

Query: 7   NSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPAI 65
           +S++VCT L  ++ E+M + +  AK +GAD+VE+ +D ++ F    ++  ++++  LP I
Sbjct: 9   SSVMVCTPLMAQSVEQMISDMYNAKTQGADVVEVRLDYIDNFQPPQDLQAILRNKPLPVI 68

Query: 66  VSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSR-SNTKI 124
           + YR KS      E  + T L+ LR A  L  ++V+ + +VASD L+ E+  +  + +K+
Sbjct: 69  IVYRPKS-EGGLYEGDEPTRLEALRLAYVLGADYVDFELKVASD-LIGELKGTHHTGSKV 126

Query: 125 IVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIA 184
           IVS Y+NG   PT E L  ++A MQATGAD++KL    ++IT+L  +F ++ HCQVP+IA
Sbjct: 127 IVSCYVNGD-MPTKENLSQLVASMQATGADIIKLVSTANNITELDRIFHLILHCQVPIIA 185

Query: 185 LAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVS 244
            +VG RGLISQLL PKFGG L+YGS+ G S+PGLPTL SL++ Y++ +IN DTK+FGLVS
Sbjct: 186 YSVGERGLISQLLSPKFGGSLLYGSMEGSSIPGLPTLDSLREAYKVAYINSDTKVFGLVS 245

Query: 245 NPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVA 304
            PV HSKGP+LHNP FRH  +NG YVPM VDD+KEFF  YS  DFAGFSVG P+KE  V 
Sbjct: 246 KPVSHSKGPLLHNPTFRHANYNGTYVPMFVDDLKEFFSVYSSPDFAGFSVGFPYKEAVVE 305

Query: 305 CCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSP 364
            CDEVHPLAKSIGAVNTIIRRP DGKL+G+NTDCE+AI+AIEDAL+E+  ++G  S  SP
Sbjct: 306 FCDEVHPLAKSIGAVNTIIRRPGDGKLIGHNTDCEAAITAIEDALKEQGYMDGRTSSNSP 365

Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFF 424
           + G+ FVLVGAGGAGRALAFGAKSRGAR++IF+ + ERAK LADAVSGEA  FE +  F 
Sbjct: 366 LTGRQFVLVGAGGAGRALAFGAKSRGARIVIFDIDLERAKFLADAVSGEAQLFENVVNFE 425

Query: 425 PEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVS 484
           PE G ILANA+ IGM PN+++ PV +  L  Y+LVFDAVYTPR TRLL+EA   GA +VS
Sbjct: 426 PENGAILANATPIGMHPNTERIPVAEATLGIYQLVFDAVYTPRKTRLLKEAEAAGAIIVS 485

Query: 485 GVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           GVEMF+RQA+GQF LFTG  AP +FMR++VL +F
Sbjct: 486 GVEMFLRQAMGQFSLFTGREAPTEFMREIVLAKF 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116787099|gb|ABK24375.1| unknown [Picea sitchensis]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 294/519 (56%), Positives = 382/519 (73%), Gaps = 11/519 (2%)

Query: 5   AKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPA 64
           A+N  LVC+ L  ET EEM + ++ AK  GAD +E+ +D +     +++++L++   LP 
Sbjct: 2   AQNGFLVCSPLMAETVEEMLSQMQHAKDVGADCIEIRLDCLNGYATTDLEQLLKARVLPT 61

Query: 65  IVSYRLKS--SRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNT 122
           IV+YRLKS   +   DE  +   L  LR A +L  +F++++ +VA D +        SN 
Sbjct: 62  IVTYRLKSEGGKYEVDEKKR---LDTLRLAHELGADFIDVELQVAFDFVSRIKDKKSSNC 118

Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPL 182
           KIIVS++++G   P+TE L  ++  MQ+TGAD++K+     +ITD++ VF+++ HCQVP+
Sbjct: 119 KIIVSNHISGR-TPSTEDLSHLVVNMQSTGADILKIVTTATNITDVSRVFQLIPHCQVPI 177

Query: 183 IALAVGSRGLISQLLGPKFGGFLVYGSLG-GK-SVPGLPTLVSLKQVYQLEHINPDTKIF 240
           IA   G RGLISQLLGPKFGG+L+YGS+G GK S PG P L  L   Y++  +N DTK+F
Sbjct: 178 IACVTGDRGLISQLLGPKFGGYLIYGSIGSGKDSTPGQPKLADLTGHYKIGRLNSDTKVF 237

Query: 241 GLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKE 300
           G+++NPVGHSKGPILHN AFR   FNG+YVP+LVD++ +F + YS  DFAGFSVGIPHKE
Sbjct: 238 GVIANPVGHSKGPILHNQAFRDAGFNGVYVPLLVDNLADFLKVYSAPDFAGFSVGIPHKE 297

Query: 301 PAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQG-INGVA 359
            AV CCDEV PLA+SIGAVNTI+RR  DGKL+GYNTDCE AISAIED L+   G IN  +
Sbjct: 298 AAVTCCDEVQPLAQSIGAVNTIVRRQSDGKLIGYNTDCEGAISAIEDGLKGETGSIN--S 355

Query: 360 SHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEY 419
             +SP+AG+ FVLVGAGGAGRALAFGAK RGA VII NRNYERAK+LA++V GEA+  E 
Sbjct: 356 GSSSPLAGRTFVLVGAGGAGRALAFGAKQRGAHVIIANRNYERAKSLANSVGGEAIAVEQ 415

Query: 420 LHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVG 479
           L+ F PE G +LAN SA+GM+PN + +P+ KEAL AY LVFDAVYTPR TRLLREA E G
Sbjct: 416 LNSFRPETGAVLANTSAVGMQPNVNATPLSKEALGAYTLVFDAVYTPRETRLLREAKEAG 475

Query: 480 ATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
             VVSG+EMFIRQA+GQ+ LFTG  AP + +RK+V++ F
Sbjct: 476 KIVVSGLEMFIRQAIGQYELFTGKPAPTELIRKIVMKDF 514

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130894|ref|XP_002328402.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222838117|gb|EEE76482.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/514 (57%), Positives = 383/514 (74%), Gaps = 6/514 (1%)

Query: 7   NSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSM-EFSHISEVDKLIQHPTLPAI 65
           NS++VC  L  ++ E+M   +  AK +GAD+VE+ +D + +F    +++ +I++  LP I
Sbjct: 9   NSVMVCAPLMAQSVEQMVIDMHSAKAQGADVVEVRLDCISKFQPRQDLETIIRNKPLPVI 68

Query: 66  VSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNT-KI 124
           + YR K       E  ++  L+ LR A DL  ++++++ +VAS+ L+ E+     N  K+
Sbjct: 69  IVYRPKW-EGGQYEGDEHRRLEALRLANDLGADYIDLELKVASE-LIWELKNKHQNGGKV 126

Query: 125 IVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIA 184
           IVSSYLNG   P+ E L  ++A MQAT AD++K+    D IT++  +F +L+HC+VP +A
Sbjct: 127 IVSSYLNGA-TPSKENLSHLVATMQATEADIIKVVSNADDITEMERIFHLLSHCEVPAVA 185

Query: 185 LAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVS 244
            +VG RGLISQLL PKFGG LVYGS+ G S+PGLPTL SL++ Y+++ IN DTK+FGLVS
Sbjct: 186 YSVGERGLISQLLCPKFGGALVYGSMEGNSIPGLPTLDSLREAYKVDCINSDTKVFGLVS 245

Query: 245 NPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVA 304
            PVGHSKGP+LHNP  RH  FNGIYVPM VDD+K+FF  Y+  DFAG+SVG P+KE  V 
Sbjct: 246 KPVGHSKGPLLHNPTLRHVNFNGIYVPMFVDDLKKFFDVYASPDFAGYSVGFPYKEAVVQ 305

Query: 305 CCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSP 364
            CDEVHPLAK IGAVNTIIRRP DGKL+GYNTDCE +I+AIEDALR+++ +NG  S  SP
Sbjct: 306 FCDEVHPLAKCIGAVNTIIRRPCDGKLIGYNTDCEGSITAIEDALRDQKYVNG-RSLNSP 364

Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFF 424
           +AGK FV+VGAGGAGRA+A GAKSRGAR+IIF+ + ERAK+LA AVSGEA HFE L  F 
Sbjct: 365 LAGKQFVVVGAGGAGRAIAVGAKSRGARLIIFDIDLERAKSLARAVSGEAQHFESLAHFQ 424

Query: 425 PEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVS 484
           PE G ILANA+ IGM P++D+ P  +E L  Y+LVFDAVYTPR TRLL++A   GA  VS
Sbjct: 425 PENGAILANATPIGMHPSTDRIPAAEETLGNYQLVFDAVYTPRKTRLLKDADAAGAITVS 484

Query: 485 GVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           GVEMF+RQA+GQF LFTG  AP+DFMR++VL +F
Sbjct: 485 GVEMFLRQAIGQFNLFTGREAPKDFMREIVLAKF 518

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451144|ref|XP_002270055.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic [Vitis vinifera] gi|298204989|emb|CBI34296.3| unnamed protein product [Vitis vinifera]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/514 (55%), Positives = 384/514 (74%), Gaps = 3/514 (0%)

Query: 6   KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPA 64
           K   ++CT L  ++ E+M   + +AKVEGADLVE+ +D +  F    +++ ++++  LP 
Sbjct: 8   KKETMICTPLMGQSVEQMVRDMHKAKVEGADLVEVRLDYINNFHPQQDLEIILRNKPLPV 67

Query: 65  IVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKI 124
           ++ YR K       E  +++ L+ L  A  L  ++++ + +VASD L  + +   S+++ 
Sbjct: 68  MIVYRPKW-EGGQYEGDEHSRLEALHLAEKLGADYIDFELKVASDFLGKQKMDQHSSSRT 126

Query: 125 IVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIA 184
           IVS Y++G   P  E L   +A +Q+TGAD++KL I   +IT++  +F +L+HCQ+PLIA
Sbjct: 127 IVSCYVDGV-TPPIEDLICRVALLQSTGADMIKLVINATNITEITKIFHLLSHCQMPLIA 185

Query: 185 LAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVS 244
            ++G RG +SQ+L  KFGGFLVYGS+ G  V GLPTL SL++ Y++++IN DTK+FGL+S
Sbjct: 186 YSIGDRGFMSQILCRKFGGFLVYGSMEGSPVAGLPTLESLREAYKVQYINKDTKVFGLIS 245

Query: 245 NPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVA 304
            PVGHSKGPILHNPAFRH  +NGIYVPMLVDD+KEFF  YS  DFAGFSVGIP+KE    
Sbjct: 246 KPVGHSKGPILHNPAFRHVNYNGIYVPMLVDDLKEFFSIYSSPDFAGFSVGIPYKEAVTG 305

Query: 305 CCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSP 364
            CDE+HPLA+SIGAVNTI+RRP DGKL+GYNTDCE++I+AIEDALRER   NG A   SP
Sbjct: 306 FCDELHPLAQSIGAVNTIMRRPSDGKLIGYNTDCEASITAIEDALRERGLPNGEAPLNSP 365

Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFF 424
           + GK FVLVGAGGAGRALAFGA+SRGA+++IF+ +++RA +LA AVSGE   +E +  F 
Sbjct: 366 LTGKQFVLVGAGGAGRALAFGARSRGAQLVIFDLDFDRANSLAHAVSGEVKLYEDVANFQ 425

Query: 425 PEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVS 484
           PEKG ILANA+ +GM PN+D+ PV +E L  Y+LVFD+VYTPR TRLL+EA   GA +VS
Sbjct: 426 PEKGAILANATPVGMHPNTDRIPVAEETLSDYQLVFDSVYTPRKTRLLKEAEAAGAIIVS 485

Query: 485 GVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           GVEMF+RQA+GQF LFTGG APE+FMR+++L +F
Sbjct: 486 GVEMFLRQAIGQFNLFTGGEAPEEFMREIILSKF 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57920902|gb|AAS90324.2| 3-dehydroquinate dehydratase / shikimate dehydrogenase isoform 2 [Nicotiana tabacum]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 292/516 (56%), Positives = 375/516 (72%), Gaps = 5/516 (0%)

Query: 6   KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPA 64
           KNS +VC  L   + E++   + QAK +GADLVE+ +D +  F    ++  L+ +  LP 
Sbjct: 8   KNSAMVCAPLMAPSVEQLVHGMLQAKAQGADLVEIRLDGINNFQPQKDLQVLLNNNPLPV 67

Query: 65  IVSYR--LKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNT 122
           ++ YR   + +    D+   +  L+VLR A +L  +++E+D ++ASD    E     S  
Sbjct: 68  LIVYRPIWEGNEFEEDDDHIHKQLEVLRWAKELGADYIELDLKIASDFTKKEKPRWSSGC 127

Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPL 182
           K+I S +++     + E L  V+A MQ+TGAD++K+    + IT+L  +F +L+HCQVPL
Sbjct: 128 KVIASCFVDN--VTSKEDLSQVVAHMQSTGADILKIVTNANDITELEKMFHLLSHCQVPL 185

Query: 183 IALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGL 242
           IA ++G RGLISQLLGPKFG  LVYGSL   +VPGLPTL SL+Q Y ++ ++ DTK+FGL
Sbjct: 186 IAYSLGERGLISQLLGPKFGSVLVYGSLDCNAVPGLPTLGSLRQAYGVDFMDTDTKVFGL 245

Query: 243 VSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPA 302
           +S PVGHSKGPILHNP FRH  +NGIYVPM VDD+KEFFR YS  DFAGFSVGIP+KE  
Sbjct: 246 ISKPVGHSKGPILHNPTFRHVGYNGIYVPMFVDDLKEFFRVYSSPDFAGFSVGIPYKEAV 305

Query: 303 VACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHT 362
           V+ CDEV PLAKSIGAVNTII+RP DGKL+GYNTDCE++I+AIEDAL+     NG A   
Sbjct: 306 VSFCDEVDPLAKSIGAVNTIIQRPCDGKLIGYNTDCEASITAIEDALKVNGLTNGAAFLP 365

Query: 363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
           SP+AGK+FVLVGAGGAGRALAFGAKSR A ++IF+ +++RAKALA AVSGEAL FE L  
Sbjct: 366 SPLAGKLFVLVGAGGAGRALAFGAKSRRAEIVIFDIDFDRAKALAAAVSGEALPFENLAS 425

Query: 423 FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV 482
           F PEKG ILANA+ IGM PN D+ PV + +LK Y +VFDAVYTPR T LL++A   GA  
Sbjct: 426 FQPEKGAILANATPIGMHPNKDRIPVSEASLKDYVVVFDAVYTPRKTTLLKDAEAAGAIT 485

Query: 483 VSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           VSGVEMF+RQA+GQF LFT   APE+FMR +V+ +F
Sbjct: 486 VSGVEMFLRQAIGQFHLFTRTKAPEEFMRDIVMAKF 521

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125426|ref|XP_002319583.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222857959|gb|EEE95506.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 289/513 (56%), Positives = 381/513 (74%), Gaps = 4/513 (0%)

Query: 7   NSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPAI 65
           NS +VC  L   + E+M   ++ A+ +GAD VE+ +D +  F    +++ +I++  LP I
Sbjct: 9   NSTMVCAPLMARSVEQMVIDMQSAEAQGADAVEVRLDYINSFQPSQDLETIIRNKPLPVI 68

Query: 66  VSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKII 125
           + YR +       E  ++T L+ LR A +L  ++++++ +VASD +       ++  K+I
Sbjct: 69  IVYRPRW-EGGQYEGDEHTRLEALRLAHELGADYIDVELKVASDLVREVKNKHQTGGKVI 127

Query: 126 VSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIAL 185
           VSSYL+G   P+ E L  ++A MQAT AD++K+    + IT+L  +F +L+H QVP +A 
Sbjct: 128 VSSYLSGA-TPSKEDLSHLVASMQATKADIIKVVSNANDITELDRIFHLLSHMQVPAVAY 186

Query: 186 AVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSN 245
           ++G RGLISQLL PKFGG LVYG++ G S+PGLPTL SL++ Y++E+IN DTK+FGLVS 
Sbjct: 187 SLGERGLISQLLCPKFGGALVYGAMEGNSIPGLPTLDSLREAYKVENINSDTKVFGLVSK 246

Query: 246 PVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVAC 305
           PV HSKGPILHNPAFRH  FNGIYVPM VDD+KEFF  Y+  DFAG+SVG P+KE  V  
Sbjct: 247 PVSHSKGPILHNPAFRHANFNGIYVPMFVDDLKEFFEVYASPDFAGYSVGFPYKEAVVQF 306

Query: 306 CDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPI 365
           CDEVHPLAKSIGAVNTIIR+P DGKL+GYNTDCE +I++IEDAL++++ ING AS  SP+
Sbjct: 307 CDEVHPLAKSIGAVNTIIRKPSDGKLIGYNTDCEGSIASIEDALKDQRYING-ASLNSPL 365

Query: 366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFP 425
           AGK FV+VGAGGAGRA+A GAKSRGARVIIF+ + +RAK+LA  VSGEA HF+ L  F P
Sbjct: 366 AGKQFVVVGAGGAGRAIAVGAKSRGARVIIFDIDLDRAKSLAQVVSGEAQHFDSLAHFQP 425

Query: 426 EKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSG 485
           EKG ILANA+ IGM P++D+ PV +  L  Y+LVFDAVYTPR TRLL +A   GA  VSG
Sbjct: 426 EKGAILANATPIGMHPSTDRIPVAEATLGNYQLVFDAVYTPRKTRLLEDADAAGAITVSG 485

Query: 486 VEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           VEMF++QA+GQF LFTG  AP+DFMR++VL +F
Sbjct: 486 VEMFLKQAIGQFSLFTGREAPKDFMREIVLAKF 518

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504076|ref|XP_003520825.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Glycine max]

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 286/519 (55%), Positives = 377/519 (72%), Gaps = 8/519 (1%)

Query: 6   KNSLLVCTQLECE---TTEEMQASIEQAKVEGADLVELCIDSM-EFSHISEVDKLIQHPT 61
           K+S++VC  +      + E++   + QAK EGAD+VEL +D +  F    ++  ++Q+  
Sbjct: 8   KHSVMVCAAITTHQYVSAEQIVNGMHQAKAEGADIVELRLDCITNFHSHHDLKIILQNKP 67

Query: 62  LPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVAS--DPLMSEIIYSR 119
           LP ++  R K       E  +N  L+ L+ A++L  +F++++ + AS    L+  +    
Sbjct: 68  LPVLIVNRPKW-EGGLYEGDENKRLEALQLAVELSADFIDVELKAASCLPTLVEHMRNHN 126

Query: 120 SNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQ 179
           S+ KIIVS Y++G   P  E L  ++  MQATGAD++KL      IT++  +F +  +CQ
Sbjct: 127 SHGKIIVSCYVDGT-TPPHEVLLQLVELMQATGADIIKLVTLAADITEIKRIFSLFLYCQ 185

Query: 180 VPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTKI 239
           VPLIA +VG RGLISQLL PKFGGF VYGSL G  +PGLP+L S+++ Y+LEH+N DTK+
Sbjct: 186 VPLIAYSVGERGLISQLLSPKFGGFFVYGSLAGNPIPGLPSLDSIQEAYKLEHVNADTKV 245

Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHK 299
           FGL+S PV HS+GPILHNP+F+   +NGIYVPM VDD+K+FF TY   DF+GFSVGIP+K
Sbjct: 246 FGLISKPVSHSRGPILHNPSFKDVNYNGIYVPMFVDDLKKFFSTYPSPDFSGFSVGIPYK 305

Query: 300 EPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVA 359
           E  +  CDEVHPLA+SIGAVNTIIRRP DGKLVGYNTDCE+AI+AIEDAL E    +G A
Sbjct: 306 EEVLRFCDEVHPLAQSIGAVNTIIRRPRDGKLVGYNTDCEAAITAIEDALIEHGCNDGEA 365

Query: 360 SHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEY 419
           S  SP+AG++FVLVGAGGAG+ALAFGAKSRGAR++IF+ +++RAK+LA AV GEA  F+ 
Sbjct: 366 SLGSPLAGRLFVLVGAGGAGKALAFGAKSRGARLVIFDIDFDRAKSLACAVFGEAQPFKE 425

Query: 420 LHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVG 479
           L  F PEKG ILANA+ +GM PN+D+ PV +  L+ Y LVFDAVYTPR TRLL EA   G
Sbjct: 426 LVNFQPEKGAILANATPVGMHPNTDRIPVAEATLEDYRLVFDAVYTPRRTRLLNEADAAG 485

Query: 480 ATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           A  V+GVEMF+RQA+GQF LFTG  APE+FMR++VL +F
Sbjct: 486 AITVAGVEMFLRQAIGQFNLFTGLEAPEEFMREIVLSKF 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128596|ref|XP_002320371.1| predicted protein [Populus trichocarpa] gi|222861144|gb|EEE98686.1| predicted protein [Populus trichocarpa]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 279/340 (82%), Positives = 304/340 (89%), Gaps = 3/340 (0%)

Query: 179 QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINPDTK 238
           Q+PLIALAVGSRGLISQLLGPKFGGFLVYGSL  K+VPG+PTL+SL+Q+Y+LE+IN DTK
Sbjct: 1   QIPLIALAVGSRGLISQLLGPKFGGFLVYGSLSDKAVPGMPTLLSLRQIYKLEYINADTK 60

Query: 239 IFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPH 298
           +FGL+SNPVGHSKGP+LHNPAFRHT +NGIYVPM VDDVKEFFRTY+ +DFAGFSVGIPH
Sbjct: 61  VFGLISNPVGHSKGPVLHNPAFRHTGYNGIYVPMQVDDVKEFFRTYTSSDFAGFSVGIPH 120

Query: 299 KEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGV 358
           KE AV CCDEVHPLAKSIGAVNTI+RRP DGKLVGYNTDC+++ISAIEDAL    G   +
Sbjct: 121 KEAAVGCCDEVHPLAKSIGAVNTIVRRPTDGKLVGYNTDCDASISAIEDAL---TGTKLI 177

Query: 359 ASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
               SP++GK FVL+GAGGAGRALAFGAKSRGARVIIFNRNYERA+ALA AVSGEAL +E
Sbjct: 178 ILVPSPLSGKTFVLIGAGGAGRALAFGAKSRGARVIIFNRNYERARALAKAVSGEALPYE 237

Query: 419 YLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEV 478
            L  F P  GMILANASAIGMEPNSDQSPV KE LKA ELVFDAVYTPRNTRLL+EA EV
Sbjct: 238 SLDRFRPVNGMILANASAIGMEPNSDQSPVSKETLKACELVFDAVYTPRNTRLLQEAKEV 297

Query: 479 GATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
            A VVSGVEMFIRQALGQFRLFTGGLAPE FMRKLVLEQF
Sbjct: 298 VAVVVSGVEMFIRQALGQFRLFTGGLAPEAFMRKLVLEQF 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
TAIR|locus:2081036	603	MEE32 "MATERNAL EFFECT EMBRYO	0.967	0.830	0.454	5.8e-114
TIGR_CMR|BA_4561	308	BA_4561 "shikimate 5-dehydroge	0.509	0.857	0.313	2.3e-32
TIGR_CMR|CHY_0623	280	CHY_0623 "shikimate 5-dehydrog	0.511	0.946	0.295	2.6e-26
TIGR_CMR|DET_0465	286	DET_0465 "shikimate 5-dehydrog	0.503	0.912	0.291	2e-25
TIGR_CMR|SPO_3891	277	SPO_3891 "shikimate 5-dehydrog	0.482	0.902	0.309	1.2e-24
POMBASE|SPAC1834.02	1573	aro1 "pentafunctional aromatic	0.868	0.286	0.272	1.9e-20
CGD|CAL0004346	1551	ARO1 [Candida albicans (taxid:	0.915	0.305	0.264	1.4e-19
ASPGD|ASPL0000055969	1583	aromA [Emericella nidulans (ta	0.594	0.194	0.293	2.7e-19
TIGR_CMR|GSU_1490	286	GSU_1490 "shikimate 5-dehydrog	0.511	0.926	0.266	3e-19
SGD|S000002534	1588	ARO1 "Pentafunctional arom pro	0.934	0.304	0.254	2.4e-18

TAIR|locus:2081036 MEE32 "MATERNAL EFFECT EMBRYO ARREST 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
 Identities = 230/506 (45%), Positives = 323/506 (63%)

Query:     6 KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSM-EFSHISEVDKLIQHPTLPA 64
             KN  L+C  +  ++ ++M     +A   GADLVE+ +D + +F+ + ++  +I+   LP 
Sbjct:    91 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 150

Query:    65 IVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKI 124
             + +YR K       E  +N    VLR A++L  ++++++ +VAS+ + S         K+
Sbjct:   151 LFTYRPKWEG-GQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKV 209

Query:   125 IVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIA 184
             IVSS+ N    P+ E L  ++A +Q TGAD++K+      I D+A +F + +  QVP I 
Sbjct:   210 IVSSH-NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIG 268

Query:   185 LAVGSRGLISQLLGPKFGGFLVYGSLGGKSV--PGLPTLVSLKQVYQLEHINPDTKIFGL 242
             L +G RGL+S++L  KFGG+L +G+L    V  PG PT+  L  +Y    I PDTK++G+
Sbjct:   269 LVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGI 328

Query:   243 VSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPA 302
             +  PV HSK PI+HN AF+   FNG+YV +LVD++  F + YS +DFAGFS  IPHKE A
Sbjct:   329 IGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAA 388

Query:   303 VACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHT 362
             + CCDEV PLAKSIGAVNTI+RR  DGKL+GYNTDC  +ISAIED LR     + V S +
Sbjct:   389 LQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSS 448

Query:   363 SPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
             SP+A K                  K +GA+V+I NR YERA  LA+A+ G+AL    L  
Sbjct:   449 SPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDN 508

Query:   423 FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV 482
             + PE GM+LAN +++GM+PN +++P+ K+ALK Y LVFDAVYTPR TRLLREA E GA  
Sbjct:   509 YHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAIT 568

Query:   483 VSGVEMFIRQALGQFRLFTGGLAPED 508
             VSG EMF+RQA  QF +FTG  AP++
Sbjct:   569 VSGSEMFVRQAYEQFEIFTGLPAPKE 594

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

TIGR_CMR|BA_4561 BA_4561 "shikimate 5-dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 89/284 (31%), Positives = 143/284 (50%)

Query:   238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTDFAGFSVG 295
             +++G++ NP+GHS  P++HN AF H + +  Y   LV +  + E  R       +GF+V 
Sbjct:     3 QLYGVIGNPIGHSLSPVMHNDAFEHLKMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query:   296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
              PHK   +   DE+ PLAK IGAVNT++ +  DGKL+GYNTD    + A+       Q I
Sbjct:    63 TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRAL-------QSI 113

Query:   356 NGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVI-IFNRNYERAKALADAVSGEA 414
             +     + P+  K                     G + I + NR  ++AK L  A +   
Sbjct:   114 S-----SEPLQEKRILLLGAGGASRAIYFSLADAGVKEIDVANRTVDKAKELIAACTATV 168

Query:   415 LHFEY-LHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRL 471
                   L +   E+G   I+   + IGM P  + +P+   +LK   +V D +Y P  T++
Sbjct:   169 HSVALSLEKATKEQGNYDIIIQTTTIGMHPRVEHTPLQISSLKKGTIVSDIIYNPFETKI 228

Query:   472 LREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVL 515
             L EA E GA + +G++MF+ Q    F ++TG +   + M++LV+
Sbjct:   229 LCEAKEQGAIIQNGIDMFVYQGALAFEMWTGCVPNIERMKQLVI 272

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|CHY_0623 CHY_0623 "shikimate 5-dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 301 (111.0 bits), Expect = 2.6e-26, P = 2.6e-26
 Identities = 86/291 (29%), Positives = 137/291 (47%)

Query:   233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFA 290
             IN +TK+ G++  P+ H+  P +HN AF+    N +Y+P+ V  + + +        +F 
Sbjct:     3 INGETKLTGIIGYPLKHTLSPQMHNEAFKALNLNFLYLPLEVAEESLPQAIYGLKAFNFR 62

Query:   291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
             G +V IP+KE      DEV   AK+IGAVNTI+     G+L+GYNTD    + ++++   
Sbjct:    63 GINVTIPYKEKVFPFLDEVATEAKTIGAVNTIVHDR--GRLIGYNTDAPGFLLSLKE--- 117

Query:   351 ERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV 410
                  N V      + GK                   + GA +II NR  ++AK LA   
Sbjct:   118 -----NDVE-----VTGKKVLLLGAGGAARAVAYALLTAGAELIIANRTIDKAKELAKDF 167

Query:   411 SGEALHFEYLHEFFPEKGMILA------NASAIGMEPNSDQSP-VPKEALKAYELVFDAV 463
              G     E L     +K + LA      N   +GM P  +Q P V    + +  + +D +
Sbjct:   168 QGVGKISEILE--LGDKPISLAPYHMAVNTLPLGMHPYENQMPAVDFTGVTSDFVAYDLI 225

Query:   464 YTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
             Y P  T+ L+ + E GA  ++G+ M + Q +  F  +TG   P   M+K +
Sbjct:   226 YNPAETKFLKASKEKGARTINGLSMLLWQGVLAFEKWTGVSPPVKVMKKAI 276

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|DET_0465 DET_0465 "shikimate 5-dehydrogenase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 293 (108.2 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 84/288 (29%), Positives = 136/288 (47%)

Query:   235 PDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGF 292
             PD  +FGL+  PV HS  P + N AF+H + + +Y+ +    ++++    +    +  G 
Sbjct:     5 PDA-LFGLIGFPVSHSVSPAMQNAAFKHCKLDYLYLTIAAKPEELQNVIASMGPLNIRGL 63

Query:   293 SVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRER 352
             +V IPHK   +   D + P A+ IGAVNTI+    +G+L GYNTD    +  +E      
Sbjct:    64 NVTIPHKIEVIKYIDSLDPAAEKIGAVNTIVNE--NGRLKGYNTDFGGFVRLLEH----- 116

Query:   353 QGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV-- 410
                N +A    P   +                   + G  + +  R  E+AK LA  +  
Sbjct:   117 ---NRIA----PAKQRFTLLGAGGSAHAIALAVC-NLGGHLTVLARQEEKAKDLAGKMCL 168

Query:   411 --SGEALHFEYLHEFFPEKGM----ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVY 464
               SG+    E L++   E+ +    ++ N + +GM   + QS VP   L+    V DA+Y
Sbjct:   169 RLSGKTQGLE-LNDTNLEEALADTDVIVNCTPVGMGNLAGQSLVPPRLLRPDLTVIDAIY 227

Query:   465 TPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRK 512
              P  TRLL +A + GA +++G+EM + Q    F ++T   AP   M K
Sbjct:   228 NPCKTRLLEDAEKRGARIINGLEMLVWQGAMSFEIWTNQKAPFRLMMK 275

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|SPO_3891 SPO_3891 "shikimate 5-dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 286 (105.7 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 82/265 (30%), Positives = 123/265 (46%)

Query:   241 GLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPH 298
             G++ +P+ HSK P LH    +    NG Y+PM V   D+ +  RT     F G ++ IPH
Sbjct:    10 GVIGHPISHSKSPRLHGHWLKTYGINGHYIPMDVAPQDLAQVVRTLPKAGFVGVNITIPH 69

Query:   299 KEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGV 358
             KE  ++  D++   A  IGAVNT+I R  DG+++  NTD       +E+    R G  G 
Sbjct:    70 KEAVMSVADQITDRATLIGAVNTLIFRE-DGRILADNTD---GYGFMENL---RAGAPG- 121

Query:   359 ASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
                  P +G                   ++    VI+ NR   RA  L D         +
Sbjct:   122 ---WDPKSGPAVVFGAGGAARAVISALAEAGVPEVIVTNRTRVRADKLKDDFGQRVTVAD 178

Query:   419 YLHEF-FPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAE 477
             ++      E   ++ N +++GM     +  VP + L+A  +V D VY P  TRLL EA E
Sbjct:   179 WVQAGNVIEDARLVVNTTSLGMI-GKPELRVPLDGLRADAVVTDLVYAPLKTRLLAEAEE 237

Query:   478 VGATVVSGVEMFIRQALGQFRLFTG 502
             +G T V G+ M + QA+  F  + G
Sbjct:   238 MGCTTVDGLGMLLHQAVPGFERWFG 262

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

POMBASE|SPAC1834.02 aro1 "pentafunctional aromatic polypeptide Aro1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 276 (102.2 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 137/502 (27%), Positives = 219/502 (43%)

Query:    42 IDSMEFSHISEVDKLIQ-HPTLPAIVSYRLKSSR----KSSDEACKNTCLQVLRRALDLD 96
             I S++F  ++E   L++   TLP I + R  S         +E  K   L  +R   D  
Sbjct:  1097 ISSLDF--VAEQISLLRCSTTLPIIFTIRTISQGGLFPNDKEEEAKELMLSAMRYGCD-- 1152

Query:    97 VEFVEMDYEVASDPLMSEIIYSRSN-TKIIVSSY-LNGG---GKPTTEKLGDVIACMQAT 151
               FV+++   +S+ +   I+Y     TK+I+S + L+G     +P  E +  V   + ++
Sbjct:  1153 --FVDVELGWSSETI--NILYQHKGYTKLIMSWHDLSGTWSWARPH-EWMQKVE--LASS 1205

Query:   152 GADVMKLEIAVDSITDLAPVFEMLTHC----QVPLIALAVGSRGLISQLLGPKFGGFLVY 207
              ADV+KL    +++ D   + E  T       +PLI   +G  G +S++L  KF   + +
Sbjct:  1206 YADVIKLVGMANNLNDNLELEEFRTRITNSMDIPLILFNMGRFGQLSRILN-KFMTPVTH 1264

Query:   208 GSLGGKSVPGLPTLVSLKQVYQL-EHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFN 266
               L  K+ PG  T+  L +   L   I P+ K F L   P+ HS+ PILH+ A+      
Sbjct:  1265 PLLPSKAAPGQLTVKQLNEARVLIGEILPE-KFF-LFGKPIKHSRSPILHSTAYELLGLP 1322

Query:   267 GIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRP 326
               Y     D V E  +  +  DF G +V IP+K   +   DE+   A+  GAVNTII   
Sbjct:  1323 HTYEAFETDTVDEVQKVLNLPDFGGANVTIPYKLSVMKFMDELSDEARFFGAVNTIIPIR 1382

Query:   327 IDGKLV--GYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXX 384
             I  KLV  G NTD         +AL    G++ +      + G                 
Sbjct:  1383 IGDKLVLRGDNTDWRGIYDTFANAL---DGVS-LRDTNGLVIG------AGGTSRAAIYS 1432

Query:   385 XXKSRGARVIIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAI-GMEPN 442
               +   +R+ + NR    +  + D    +  +H     +  P + +     SA+    P 
Sbjct:  1433 LHRLGVSRIYLLNRTLANSYRVQDVFPPDYNIHI-IDSDNIPSEELSSVTLSAVVSTIPA 1491

Query:   443 SDQSP-----VPKEAL--KAYELVF-DAVYTPRNTRLLREAAEVGATVVSGVEMFIRQAL 494
               + P     V K  L  KA   VF D  Y P +T L+  A+++     +G+E  +RQ L
Sbjct:  1492 DIELPEKVASVIKALLANKADGGVFLDMAYKPLHTPLMAVASDLEWKCCNGLEALVRQGL 1551

Query:   495 GQFRLFTGGLAPEDFMRKLVLE 516
               F L+TG  AP D + + V+E
Sbjct:  1552 ASFHLWTGMTAPFDAVYQKVIE 1573

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0004346 ARO1 [Candida albicans (taxid:5476)]

 Score = 268 (99.4 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 137/518 (26%), Positives = 221/518 (42%)

Query:    22 EMQASIEQAKVEGADLVELCID-----SMEFSHISEVDKLIQHPTLPAIVSYRLKSSR-K 75
             E+   +E   + GAD VEL +D     S EF   +++  + +H  LP I + R  S   K
Sbjct:  1056 EVVRDLESITI-GADAVELRVDLFKDTSAEFV-AAQIAVIRKHADLPIIYTVRTMSQGGK 1113

Query:    76 SSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSY--LNGG 133
               DE   +    +L   + L V +V++    A + L+ EI   +  T++I  +Y  +NG 
Sbjct:  1114 FPDENV-DELKSLLLLGIRLGVAYVDLQL-TAPNELIEEISSKKGFTRVI-GTYQDINGE 1170

Query:   134 GKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQV-PLIALAVGSRGL 192
              K    +  +      +  AD+++L    +SI D   +        + PLIA  +GS+G 
Sbjct:  1171 LKWNNVEWKNKYNQGVSMNADIVRLVGKANSIQDNLDLENFKKQNTLKPLIAFNLGSQGK 1230

Query:   193 ISQLLGPKFGGFLVYGSLGGKSVPG---LPTLVSLKQVYQLEHINPDTKIFGLVSNPVGH 249
             +SQ+L    G F     +  K +P      T+  L Q Y  +      K F ++ +P+ H
Sbjct:  1231 LSQVLN---GTFT---PISHKLLPNDEEFLTIGELNQTY-FDIGGFTAKKFWVIGSPIEH 1283

Query:   250 SKGPILHNPAFRHTRFNGIYVPMLVDDVKEFF-RTYSGTDFAGFSVGIPHKEPAVACCDE 308
             S+ P LHN  ++       +      DV   +    +  DF G ++ +P K   +    +
Sbjct:  1284 SRSPNLHNAGYKALNLPYQFGRFEATDVDVVYDNLINKPDFGGLAITMPLKLDIMKFATK 1343

Query:   309 VHPLAKSIGAVNTIIRRPIDGKLVGYNTDCES-AISAIEDALRERQGINGV---ASHTSP 364
             +   A++IGAVNT+I  PI+G   G NTD    + S I   +  +   NG+   A  TS 
Sbjct:  1344 LSDAAETIGAVNTLI--PIEGGYFGDNTDWVGISNSFIRAGVPPKSSSNGLVVGAGGTSR 1401

Query:   365 IAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYE----RAKALADAVSGEALHFEYL 420
              A                    K     V  F ++Y       +  AD  S  +L    +
Sbjct:  1402 AAIYALHQMGCAKIYLVNRTAAKLEEL-VKSFPKDYNLEIVETEQQADKASKVSLAVSCI 1460

Query:   421 HEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGA 480
                 P  G +L     I +   S+QS   K  L       +A Y PR T +++ A E   
Sbjct:  1461 PADKPLDGEVLKKIERI-LSNGSEQSAGFKPTL------LEASYKPRVTPIMKLAEEQYK 1513

Query:   481 -TVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
               V+ GVEM + Q   QF+L TG  AP + + + V+E+
Sbjct:  1514 WKVIPGVEMLVNQGDRQFKLHTGFTAPYEIIHRAVVEE 1551

GO:0005829 "cytosol" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

ASPGD|ASPL0000055969 aromA [Emericella nidulans (taxid:162425)]

 Score = 234 (87.4 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
 Identities = 103/351 (29%), Positives = 163/351 (46%)

Query:    27 IEQAKVEGADLVELCIDSMEF----SHISEVDKLIQH-------PTLPAIVSYRLKSSRK 75
             +E+  V G+D VEL +D ++     + I  VD +++         TLP I + R +S   
Sbjct:  1068 LEEVCV-GSDAVELRVDLLKDPASNNDIPSVDYVVEQLSFLRSRVTLPIIFTIRTQSQGG 1126

Query:    76 SSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGK 135
                +   +  L++ R A     EFV+++     D L + +   +  +KII S + +  G+
Sbjct:  1127 RFPDNAHDAALELYRLAFRSGCEFVDLEIAFPEDMLRA-VTEMKGFSKIIASHH-DPKGE 1184

Query:   136 PTTEKLGDVIACMQATG-ADVMKLE-IA--VDSITDLAPVFEMLTHCQ-VPLIALAVGSR 190
              +   +  +    +A    D++KL  +A  +D  T L            VPLIA+ +G +
Sbjct:  1185 LSWANMSWIKFYNKALEYGDIIKLVGVARNIDDNTALRKFKNWAAEAHDVPLIAINMGDQ 1244

Query:   191 GLISQLLGPKFGGFLV---YGSLGGKSVPGLPTLVSLKQVYQLE-HINPDTKIFGLVSNP 246
             G +S++L     GF+    + SL  K+ PG  +   +++   L   I P  K F +  +P
Sbjct:  1245 GQLSRILN----GFMTPVSHPSLPFKAAPGQLSATEIRKGLSLMGEIKP--KKFAIFGSP 1298

Query:   247 VGHSKGPILHNPAFRHTRFNGIYVPMLV---DDVKEFFRTYSGTDFAGFSVGIPHKEPAV 303
             +  S+ P LHN  F        Y  +      DV+EF R+    DF G SV IP K   +
Sbjct:  1299 ISQSRSPALHNTLFAQVGLPHNYTRLETTNAQDVQEFIRS---PDFGGASVTIPLKLDIM 1355

Query:   304 ACCDEVHPLAKSIGAVNTIIRRPID-GK-----LVGYNTDCESAISAIEDA 348
                DEV   A+ IGAVNTII  P+  GK     LVG NTD +  I ++  A
Sbjct:  1356 PLLDEVAAEAEIIGAVNTII--PVSTGKNTPSRLVGRNTDWQGMILSLRKA 1404

GO:0070403 "NAD+ binding" evidence=IPI

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA;RCA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=RCA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=RCA;IDA

GO:0004765 "shikimate kinase activity" evidence=RCA;IDA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=RCA;IDA

GO:0009423 "chorismate biosynthetic process" evidence=IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=RCA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|GSU_1490 GSU_1490 "shikimate 5-dehydrogenase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 237 (88.5 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 77/289 (26%), Positives = 122/289 (42%)

Query:   237 TKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTDFAGFSV 294
             T++ G++  PV HS  P++ N A +    +  YVP  V++  + +  R  +     GF+V
Sbjct:     7 TRVLGIIGQPVSHSLSPLMQNAALQAMGLDYAYVPFAVEEDCLADAVRGLAALGVVGFNV 66

Query:   295 GIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQG 354
              IPHK   +   D + P A+ IGA N + R   D  LVGYNTD    I ++ + L    G
Sbjct:    67 TIPHKSAILPLLDRLSPEAELIGAANVVKREGSD--LVGYNTDGTGFIQSLSEDL----G 120

Query:   355 INGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGEA 414
                     +P   +I                  +  A V+I NR+  R + L+ A     
Sbjct:   121 F-------TPAGCRILVMGAGGAARAAVASLAGAGAASVVIANRSIARGEELSAAFRRHF 173

Query:   415 LHFEYLH-EFFPEKGM-------ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP 466
             +  ++      PE          +L N S++GM   +    +    +  +  V+D VY P
Sbjct:   174 IGTQFAAIPLDPENLNRCVQNFDLLVNTSSVGMGGTAFPG-MDLSRMGPHGAVYDMVYVP 232

Query:   467 RNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVL 515
               T LL EA   G    +G+ M   Q      L+TG   PE  M+  ++
Sbjct:   233 AVTPLLAEAERCGIRYANGIGMLAAQGECALELWTGVRPPEGLMKACLM 281

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

SGD|S000002534 ARO1 "Pentafunctional arom protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 257 (95.5 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 135/531 (25%), Positives = 228/531 (42%)

Query:     1 MEVAAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSM-EFS--HISEVDKLI 57
             +E+ +  S  VC   + + TE+ + ++      G + VE+ +D +  +S   +S+   ++
Sbjct:  1069 IEIPSGRSAFVCLTFD-DLTEQTE-NLTPI-CYGCEAVEVRVDHLANYSADFVSKQLSIL 1125

Query:    58 QHPT--LPAIVSYR-LKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSE 114
             +  T  +P I + R +K      DE  K T  ++   AL   VEF++++  + +D +  E
Sbjct:  1126 RKATDSIPIIFTVRTMKQGGNFPDEEFK-TLRELYDIALKNGVEFLDLELTLPTD-IQYE 1183

Query:   115 IIYSRSNTKIIVSSY-LNGGGKPTTEKLGDVIACMQATGADVMK-LEIAVDSITDLAPVF 172
             +I  R NTKII S +   G       +  +          DV+K +  AV+   +L    
Sbjct:  1184 VINKRGNTKIIGSHHDFQGLYSWDDAEWENRFNQALTLDVDVVKFVGTAVNFEDNLRLEH 1243

Query:   173 EMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVY-QLE 231
                TH   PLIA+ + S+G IS++L       +    L   + PG  T+  + ++Y  + 
Sbjct:  1244 FRDTHKNKPLIAVNMTSKGSISRVLNNVLTP-VTSDLLPNSAAPGQLTVAQINKMYTSMG 1302

Query:   232 HINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD---VKEFFRTYSGT- 287
              I P  ++F +V  P+GHS+ PILHN  +        +     +    VKE  +   G  
Sbjct:  1303 GIEPK-ELF-VVGKPIGHSRSPILHNTGYEILGLPHKFDKFETESAQLVKE--KLLDGNK 1358

Query:   288 DFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGK-LVGYNTDCESAISAIE 346
             +F G +V IP K   +   DE+   AK IGAVNT+I  P+  K   G NTD       I 
Sbjct:  1359 NFGGAAVTIPLKLDIMQYMDELTDAAKVIGAVNTVI--PLGNKKFKGDNTDW----LGIR 1412

Query:   347 DALRERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKAL 406
             +AL      NGV  +    AG +                   +  ++ I NR   + K L
Sbjct:  1413 NALIN----NGVPEYVGHTAGLVIGAGGTSRAALYALHSLGCK--KIFIINRTTSKLKPL 1466

Query:   407 ADAVSGE--ALHFEYLHEFFPEKGMILANASAIGME-PNSDQ--SPVPKEALKAYELVF- 460
              +++  E   +  E        K  +    S +  + P  D+  S + +  +K     F 
Sbjct:  1467 IESLPSEFNIIGIESTKSIEEIKEHVGVAVSCVPADKPLDDELLSKLERFLVKGAHAAFV 1526

Query:   461 ----DAVYTPRNTRLLREAAEVGAT-VVSGVEMFIRQALGQFRLFTGGLAP 506
                 +A Y P  T ++  + +     VV G +M + Q + QF  +TG   P
Sbjct:  1527 PTLLEAAYKPSVTPVMTISQDKYQWHVVPGSQMLVHQGVAQFEKWTGFKGP 1577

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA;IDA

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=IEA;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SQT8	DHQSD_ARATH	1, ., 1, ., 1, ., 2, 5	0.4726	0.9787	0.8407	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.2.1.10	0.914
3rd Layer	1.1.1	0.921
3rd Layer	4.2.1	0.921
4th Layer	1.1.1.25	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	DHQD5	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25 4.2.1.10) (504 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	DHQS6	SubName- Full=Putative uncharacterized protein; (375 aa)	•	•	•			•	•		0.972
	SK2	shikimate kinase (EC-2.7.1.71) (286 aa)			•			•	•		0.951
	SK3	shikimate kinase (EC-2.7.1.71) (294 aa)			•			•	•		0.949
	SKp	shikimate kinase (EC-2.7.1.71) (223 aa)			•			•	•		0.947
	SK1	shikimate kinase (EC-2.7.1.71) (286 aa)			•			•	•		0.939
	DHQD2	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25) (521 aa)			•			•		•	0.903
	DHQD4	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25) (518 aa)			•			•		•	0.903
	DHQD3	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25 4.2.1.10) (518 aa)			•			•		•	0.902
	DHQD1	dehydroquinate dehydratase/ shikimate dehydrogenase (EC-1.1.1.25 4.2.1.10) (518 aa)			•			•		•	0.902
	EPSPS	3-phosphoshikimate 1-carboxyvinyltransferase (EC-2.5.1.19) (519 aa)	•	•	•			•	•		0.686

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	518
PLN02520	529	PLN02520, PLN02520, bifunctional 3-dehydroquinate	0.0
COG0169	283	COG0169, AroE, Shikimate 5-dehydrogenase [Amino ac	1e-82
PRK00258	278	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewe	1e-76
TIGR00507	270	TIGR00507, aroE, shikimate 5-dehydrogenase	2e-64
PRK12548	289	PRK12548, PRK12548, shikimate 5-dehydrogenase; Pro	7e-42
cd01065	155	cd01065, NAD_bind_Shikimate_DH, NAD(P) binding dom	4e-37
PRK09310	477	PRK09310, aroDE, bifunctional 3-dehydroquinate deh	6e-37
pfam01487	222	pfam01487, DHquinase_I, Type I 3-dehydroquinase	3e-34
PRK12550	272	PRK12550, PRK12550, shikimate 5-dehydrogenase; Rev	4e-33
PRK12749	288	PRK12749, PRK12749, quinate/shikimate dehydrogenas	9e-32
PRK12549	284	PRK12549, PRK12549, shikimate 5-dehydrogenase; Rev	3e-31
cd00502	225	cd00502, DHQase_I, Type I 3-dehydroquinase, (3-deh	2e-27
TIGR01809	282	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase	7e-27
pfam08501	83	pfam08501, Shikimate_dh_N, Shikimate dehydrogenase	1e-25
TIGR01093	228	TIGR01093, aroD, 3-dehydroquinate dehydratase, typ	7e-25
PRK14027	283	PRK14027, PRK14027, quinate/shikimate dehydrogenas	2e-20
COG0710	231	COG0710, AroD, 3-dehydroquinate dehydratase [Amino	8e-18
PRK02412	253	PRK02412, aroD, 3-dehydroquinate dehydratase; Prov	3e-10
pfam01488	133	pfam01488, Shikimate_DH, Shikimate / quinate 5-deh	1e-09
PRK13575	238	PRK13575, PRK13575, 3-dehydroquinate dehydratase;	2e-07
COG0373	414	COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme m	3e-07
PRK00045	423	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	3e-07
cd05213	311	cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-bindi	1e-06
TIGR01035	417	TIGR01035, hemA, glutamyl-tRNA reductase	1e-05
PRK08277	278	PRK08277, PRK08277, D-mannonate oxidoreductase; Pr	5e-04
PRK12826	251	PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote	0.002
PRK05872	296	PRK05872, PRK05872, short chain dehydrogenase; Pro	0.003
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	0.004
PRK05653	246	PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein)	0.004
PRK08324	681	PRK08324, PRK08324, short chain dehydrogenase; Val	0.004

>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

 Score =  603 bits (1556), Expect = 0.0
 Identities = 264/516 (51%), Positives = 355/516 (68%), Gaps = 14/516 (2%)

Query: 4   AAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTL 62
             +N  L+C  +  ++ ++M   + +AK  GADLVE+ +D ++ F+   ++  LI+   L
Sbjct: 18  VRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPL 77

Query: 63  PAIVSYRLK--SSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRS 120
           P +V+YR K    +   DE   N     LR A++L  ++V+++ +VA    ++ I   + 
Sbjct: 78  PTLVTYRPKWEGGQYEGDE---NKRQDALRLAMELGADYVDVELKVA-HEFINSISGKKP 133

Query: 121 -NTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQ 179
              K+IVSS+ N    P+ E+LG+++A +QATGAD++K+      ITD+A +F++  H Q
Sbjct: 134 EKCKVIVSSH-NYENTPSVEELGNLVARIQATGADIVKIATTALDITDVARMFQITVHSQ 192

Query: 180 VPLIALAVGSRGLISQLLGPKFGGFLVYGSL--GGKSVPGLPTLVSLKQVYQLEHINPDT 237
           VP I L +G RGLIS++L PKFGG+L +G+L  G  S PG PT+  L  +Y    I PDT
Sbjct: 193 VPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQIGPDT 252

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIP 297
           K++G++  PVGHSK PILHN AF+   FNG+YV +LVDD+ +F +TYS  DFAGFS  IP
Sbjct: 253 KVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIP 312

Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGING 357
           HKE A+ CCDEV P+AKSIGA+NTIIRRP DGKLVGYNTD   AISAIED LR       
Sbjct: 313 HKEDALKCCDEVDPIAKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIEDGLR---ASGS 369

Query: 358 VASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF 417
             +  SP+AGK+FV++GAGGAG+ALA+GAK +GARV+I NR YERAK LADAV G+AL  
Sbjct: 370 SPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTL 429

Query: 418 EYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAE 477
             L  F PE+GMILAN +++GM+PN D++P+ K ALK Y LVFDAVYTP+ TRLLREA E
Sbjct: 430 ADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLREAEE 489

Query: 478 VGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKL 513
            GA +VSG EMFIRQA  QF  FTG  AP++  R++
Sbjct: 490 SGAIIVSGTEMFIRQAYEQFERFTGLPAPKELFREI 525

Length = 529

>gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

 Score =  257 bits (660), Expect = 1e-82
 Identities = 110/294 (37%), Positives = 154/294 (52%), Gaps = 22/294 (7%)

Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFA 290
           +N  TK+FG++ NP+ HS  P +HN AFR    + +Y+   V  +D+ E         F 
Sbjct: 2   MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFR 61

Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
           G +V IP KE A+   DE+ P A+ IGAVNT++R   DGKL GYNTD    + A+++   
Sbjct: 62  GLNVTIPFKEAALPLLDELSPRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFGL 120

Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALAD- 408
                         + GK  +++GAGGA RA+AF     GA R+ + NR  ERA+ LAD 
Sbjct: 121 PV-----------DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADL 169

Query: 409 ----AVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVY 464
                 + EA     L     E+  +L NA+ +GM      SPVP E L    +V+D VY
Sbjct: 170 FGELGAAVEAAALADLEGL--EEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVY 227

Query: 465 TPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
            P  T LLREA   GA  + G+ M + QA   F L+TG   P D M++ ++E  
Sbjct: 228 NPLETPLLREARAQGAKTIDGLGMLVHQAAEAFELWTGVEPPVDVMKEALIEAL 281

Length = 283

>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed

 Score =  242 bits (620), Expect = 1e-76
 Identities = 91/290 (31%), Positives = 142/290 (48%), Gaps = 18/290 (6%)

Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFA 290
           I   T+++ ++ NP+ HSK P++HN AF+    +G+Y+ +LV  +D+++  + +      
Sbjct: 1   ITGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGR 60

Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
           G +V +P KE A A  DE+   A+ IGAVNT++    DG+L+G NTD    + A    L 
Sbjct: 61  GANVTVPFKEAAFALADELSERARLIGAVNTLVLE--DGRLIGDNTDGIGFVRA----LE 114

Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNYERAKALADA 409
           ER G+         + GK  +++GAGGA RA+       G A + I NR  ERA+ LA  
Sbjct: 115 ERLGV--------DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKL 166

Query: 410 VSGEALHFEYLHEFFPEKGM-ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN 468
                     L          ++ NA++ GM       P+P   L+   +V+D +Y P  
Sbjct: 167 FGALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLP 226

Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           T  L  A   GA  + G+ M + QA   F L+TG   P + M   +    
Sbjct: 227 TPFLAWAKAQGARTIDGLGMLVHQAAEAFELWTGVRPPVEPMLAALRAAL 276

Length = 278

>gnl|CDD|161904 TIGR00507, aroE, shikimate 5-dehydrogenase

 Score =  210 bits (536), Expect = 2e-64
 Identities = 96/285 (33%), Positives = 143/285 (50%), Gaps = 20/285 (7%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVG 295
           K++G++ NP+ HSK P++HN  F+     G Y+  LV  DD+++    +    F G +V 
Sbjct: 1   KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVT 60

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
            P KE A    DE+   AK  GAVNT++    DGKLVGYNTD    +S +E  +      
Sbjct: 61  SPFKERAFQFLDEIDGRAKLAGAVNTLVLE--DGKLVGYNTDGIGLVSDLEQLIP----- 113

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS--GE 413
                       +  +++GAGGA +A+A         VII NR   +A+ LA+     GE
Sbjct: 114 --------LRPNQNVLIIGAGGAAKAVALELLKADCNVIIANRTVSKAEELAERFQRYGE 165

Query: 414 ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLR 473
              F  + E    +  ++ NA++ GM  N D+ PVP E LK  +LV+D VY P  T  L 
Sbjct: 166 IQAFS-MDELPLHRVDLIINATSAGMSGNIDEPPVPAEYLKEGKLVYDLVYNPLETPFLA 224

Query: 474 EAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           EA  +G   + G+ M + QA   F L+TG     + M + ++   
Sbjct: 225 EAKSLGTKTIDGLGMLVYQAALSFELWTGVEPDIEKMFEQLISVL 269

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain [Amino acid biosynthesis, Aromatic amino acid family]. Length = 270

>gnl|CDD|183585 PRK12548, PRK12548, shikimate 5-dehydrogenase; Provisional

 Score =  151 bits (382), Expect = 7e-42
 Identities = 90/298 (30%), Positives = 144/298 (48%), Gaps = 33/298 (11%)

Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVP--MLVDDVKEFFRTYSGTDFA 290
           I+  T + GL+ +PVGHS  P ++N +F+    +  Y+   + VD V +  +     +  
Sbjct: 5   ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMR 64

Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
           G +V +P K  A    DE+ P A+ IGAVNTI+    DGKL G+ TD    +  + +   
Sbjct: 65  GANVTMPCKSEAAKYMDELSPAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLRE--- 119

Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRN---YERAK-- 404
                +GV      + GK   ++GAGGA  A+       GA+ I IFN     YERA+  
Sbjct: 120 -----HGVD-----VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQT 169

Query: 405 --ALADAVSGEALHF------EYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAY 456
              +   V    ++       E L         IL NA+ +GM+PN  ++ +   ++   
Sbjct: 170 AEKIKQEVPECIVNVYDLNDTEKLKAEI-ASSDILVNATLVGMKPNDGETNIKDTSVFRK 228

Query: 457 ELVF-DAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKL 513
           +LV  D VY P+ T+LL +A   G   V G+ M + Q    ++L+TG   P + +++L
Sbjct: 229 DLVVADTVYNPKKTKLLEDAEAAGCKTVGGLGMLLWQGAEAYKLYTGKDMPVEEVKEL 286

Length = 289

>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate dehydrogenase

 Score =  133 bits (338), Expect = 4e-37
 Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 16/169 (9%)

Query: 336 TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVI 394
           TD    + A+E+A  E             + GK  +++GAGGA RA+A+     GA +++
Sbjct: 1   TDGLGFVRALEEAGIE-------------LKGKKVLILGAGGAARAVAYALAELGAAKIV 47

Query: 395 IFNRNYERAKALADAVSGEALHFEYLHEF-FPEKGMILANASAIGMEPNSDQSPVPKEAL 453
           I NR  E+AKALA+      +   YL       +  ++ N + +GM+P  D+ P+P   L
Sbjct: 48  IVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP-GDELPLPPSLL 106

Query: 454 KAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTG 502
           K   +V+D VY P  T LL+EA  +GA  + G+EM + QA   F L+TG
Sbjct: 107 KPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEMLVYQAAEAFELWTG 155

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DHs, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 155

>gnl|CDD|137204 PRK09310, aroDE, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

 Score =  142 bits (359), Expect = 6e-37
 Identities = 115/421 (27%), Positives = 181/421 (42%), Gaps = 46/421 (10%)

Query: 93  LDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATG 152
           LD+D +F +          +  I       KII+S + +       E +  +   M A+ 
Sbjct: 83  LDIDKDFPKEA--------LIRIRKLHPKIKIILSYHTS-----EHEDIIQLYNEMLASA 129

Query: 153 ADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGG 212
           AD  K+ ++  S TDL  +             L +G  G  S++L P       Y +  G
Sbjct: 130 ADYYKIAVSSSSSTDLLNIIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIG 189

Query: 213 --KSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYV 270
                PG  +L  L   Y   +++  + I+GL+ +PV  S   + HNP F     N  Y+
Sbjct: 190 APPVAPGQLSLEHL-LFYNYANLSAQSPIYGLIGDPVDRSISHLSHNPLFSQLSLNCPYI 248

Query: 271 PMLVD--DVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPID 328
            + +   ++ +FF T     F G SV +P K   +   D++ P  K  G+ NT++ R  +
Sbjct: 249 KLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR--N 306

Query: 329 GKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKS 388
           GK+ GYNTD E   S ++                 P+  +   +VGAGGA +A+A     
Sbjct: 307 GKIEGYNTDGEGLFSLLK-------------QKNIPLNNQHVAIVGAGGAAKAIATTLAR 353

Query: 389 RGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV 448
            GA ++IFNR    A+ALA    G+A   E L E      +I        + P+     +
Sbjct: 354 AGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINC------LPPSVT---I 404

Query: 449 PKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRL-FTGGLAPE 507
           P +A      V D    P+++   + A   G++++ G EMF  QAL QFRL F   L   
Sbjct: 405 P-KAFPP--CVVDINTLPKHSPYTQYARSQGSSIIYGYEMFAEQALLQFRLWFPTLLFKH 461

Query: 508 D 508
            
Sbjct: 462 L 462

Length = 477

>gnl|CDD|216526 pfam01487, DHquinase_I, Type I 3-dehydroquinase

 Score =  128 bits (324), Expect = 3e-34
 Identities = 80/231 (34%), Positives = 122/231 (52%), Gaps = 22/231 (9%)

Query: 12  CTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVD----KLIQHPTLPAIVS 67
           C  +   + EE  A +E+ + EGAD VEL +D +E     +V      L +   LP I +
Sbjct: 1   CVPVTGPSLEEALAELEELE-EGADAVELRLDLLEDVDAEDVSEQLSALREKTGLPIIFT 59

Query: 68  YRLKSS----RKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTK 123
            R KS       S +E      L++L+ AL L  ++++++   A D L++ II  +  TK
Sbjct: 60  VRTKSEGGRFDGSEEEY-----LELLKEALRLGPDYIDIELSSAPDELLAVIIAKKGGTK 114

Query: 124 IIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAV--DSITDLAPVFEMLTHCQ-- 179
           II+S Y +  G P+ E L  +   MQ  GAD++K  IAV  +SI D+  +    +  +  
Sbjct: 115 IILS-YHDFEGTPSWEDLLSLYEEMQKLGADIVK--IAVMANSIEDVLRLLRFTSEAKEL 171

Query: 180 -VPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQ 229
             PLIA+++G  G IS++LGP FG  L Y SLG  S PG  TL  L++  +
Sbjct: 172 DKPLIAISMGELGRISRILGPVFGSVLTYASLGKASAPGQITLEELREALE 222

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyzes the trans-dehydration of 3-dehydroshikimate see pfam01220. Length = 222

>gnl|CDD|183587 PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed

 Score =  126 bits (320), Expect = 4e-33
 Identities = 71/215 (33%), Positives = 101/215 (46%), Gaps = 24/215 (11%)

Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
           G +V +P KE  +   DE+ P A++I +VNTI+    DG L  YNTD      AI   L 
Sbjct: 62  GCAVSMPFKEAVIPLVDELDPSAQAIESVNTIVNT--DGHLKAYNTDYI----AIAKLLA 115

Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNYERAKALADA 409
                  V             L G+GG  +A+A   +  G     I  RN +  KALA+ 
Sbjct: 116 S----YQVPPDLV------VALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL 165

Query: 410 VSGEALHFEYLHEFFPEKGMILANASAIGME--PNSDQSPVPKEALKAYELVFDAVYTPR 467
                  +E+  +    +  IL N + IGM   P +D+   P+  + A  +VFD V  P 
Sbjct: 166 -----YGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPA 220

Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTG 502
            T L+R A   G TV++G E+   QA+ QF L+TG
Sbjct: 221 ETPLIRYARARGKTVITGAEVIALQAVEQFVLYTG 255

Length = 272

>gnl|CDD|183721 PRK12749, PRK12749, quinate/shikimate dehydrogenase; Reviewed

 Score =  123 bits (310), Expect = 9e-32
 Identities = 88/293 (30%), Positives = 139/293 (47%), Gaps = 32/293 (10%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTD---FAGFSV 294
           ++ GL++ P+ HS  P + N A         Y+   VD+   F     G       G  V
Sbjct: 8   ELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDN-DSFPGAIEGLKALKMRGTGV 66

Query: 295 GIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQG 354
            +P+K+ A    DE+ P AK +GA+NTI+    DG L GYNTD    I AI+++     G
Sbjct: 67  SMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----G 119

Query: 355 INGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRN---YERAKALADAV 410
            +        I GK  VL+GAGGA  A+       G + I +FNR    +++A A A  V
Sbjct: 120 FD--------IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRV 171

Query: 411 SGEALHFEYLHEFFPEKGM--------ILANASAIGMEPNSDQSPV-PKEALKAYELVFD 461
           +        + +   ++          IL N + +GM+P  ++S V     L    LV +
Sbjct: 172 NENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTE 231

Query: 462 AVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
            VY P  T+LL++A + G   + G  M + Q   QF L+TG   P +++++++
Sbjct: 232 CVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284

Length = 288

>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed

 Score =  121 bits (307), Expect = 3e-31
 Identities = 84/290 (28%), Positives = 120/290 (41%), Gaps = 60/290 (20%)

Query: 241 GLVSNPVGHSKGPILHNPAFRHTRFNGIYVP-------MLVDDVKEFFRTYSGTDFAGFS 293
           GL+   +  S  P +H           +Y         +  D + E         FAG +
Sbjct: 9   GLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLN 68

Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDC----ESAISAIEDAL 349
           +  P K+  +   DE+   A+++GAVNT++ R  DG+ +G+NTD     ES    + DA 
Sbjct: 69  ITHPCKQAVIPHLDELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGLPDAS 126

Query: 350 RERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALAD 408
            ER                  V +GAGGAG A+A    + G  R+ IF+ +  RA ALAD
Sbjct: 127 LER-----------------VVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALAD 169

Query: 409 AVSGEALHFEYLHEFFPEKGMI--------------LANASAIGM--EPNSDQSPVPKEA 452
            ++            FP                   L +A+  GM   P     P+P E 
Sbjct: 170 ELNA----------RFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGL---PLPAEL 216

Query: 453 LKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTG 502
           L+    V D VY P  T LLR A  +G   + G  M + QA+  F LFTG
Sbjct: 217 LRPGLWVADIVYFPLETELLRAARALGCRTLDGGGMAVFQAVDAFELFTG 266

Length = 284

>gnl|CDD|188633 cd00502, DHQase_I, Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase)

 Score =  109 bits (275), Expect = 2e-27
 Identities = 76/235 (32%), Positives = 114/235 (48%), Gaps = 24/235 (10%)

Query: 10  LVCTQLE-CETTEEMQASIEQAKVEGADLVELCIDSMEFSHIS----EVDKLIQHPTLPA 64
            +C  L   +  EE  + +E   + GAD VEL +D +E   I     ++  L +   LP 
Sbjct: 1   KICVPLTGPDLLEEALSLLE--LLLGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPI 58

Query: 65  IVSYRLKSS----RKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEI-IYSR 119
           I + R KS       S +E      L++L  AL L  ++V  D E+ S  L   I    +
Sbjct: 59  IFTVRTKSEGGNFEGSEEEY-----LELLEEALKLGPDYV--DIELDSALLEELINSRKK 111

Query: 120 SNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQ 179
            NTKII S Y +  G P+ E+L   +  M A GAD++K+ +  +SI D   + +     +
Sbjct: 112 GNTKIIGS-YHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVK 170

Query: 180 ----VPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQL 230
               +PLIA+ +G  G +S++L P FG  L Y SL   S PG  ++  LKQ   L
Sbjct: 171 NLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEPSAPGQLSVEELKQALSL 225

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase). Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism. Length = 225

>gnl|CDD|233580 TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type

 Score =  109 bits (274), Expect = 7e-27
 Identities = 74/285 (25%), Positives = 112/285 (39%), Gaps = 24/285 (8%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGT--DFAGFSVG 295
           K   ++  P+ HS+ P LHN  +                 +E     SG    F G SV 
Sbjct: 6   KKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFGPQFGGASVT 65

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
           IP K   +   DE    A  IG+VNT++R   +G   G NTD +    A+ +        
Sbjct: 66  IPLKFAILRFADEHTDRASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALAN-------- 116

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADAV--SG 412
            G      P+AG   +++GAGG  RA  +   S G   I + NRN ++   L D     G
Sbjct: 117 IGKFE---PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG 173

Query: 413 EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVP-------KEALKAYELVFDAVYT 465
                E        +       S +  +  +D   +         +   +  +  DA Y 
Sbjct: 174 VITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYD 233

Query: 466 PRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFM 510
           P  T L+   +  G  V+SG++M + Q   QF  +TG  AP + M
Sbjct: 234 PWPTPLVAIVSAAGWRVISGLQMLLHQGFAQFEQWTGMPAPREAM 278

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway [Amino acid biosynthesis, Aromatic amino acid family]. Length = 282

>gnl|CDD|149523 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate binding domain

 Score =   99 bits (250), Expect = 1e-25
 Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 242 LVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHK 299
           L+ NP+ HS  P++HN AF+    NG+YV   V  D++ EF        F G +V IPHK
Sbjct: 1   LIGNPISHSLSPLIHNAAFKALGLNGVYVAFEVPPDNLPEFVEGLRALGFRGLNVTIPHK 60

Query: 300 EPAVACCDEVHPLAKSIGAVNTI 322
           E A+   DE+ P AK IGAVNTI
Sbjct: 61  EAAIPLLDELSPEAKRIGAVNTI 83

This domain is the substrate binding domain of shikimate dehydrogenase. Length = 83

>gnl|CDD|233268 TIGR01093, aroD, 3-dehydroquinate dehydratase, type I

 Score =  102 bits (256), Expect = 7e-25
 Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 25/236 (10%)

Query: 10  LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEF-SHISEVDKLIQ-----HPTLP 63
            +   L     EE  A+ E+    GAD+VEL +D ++  S  ++VD LI+      P  P
Sbjct: 1   KIFVPLTAPDLEEALATAEKICK-GADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKP 59

Query: 64  AIVSYRLKS---SRKSSDEACKNTCLQVLRRALD-LDVEFVEMDYEVASDPLMSEIIYS- 118
            I + R  S       ++E      L+ L+RA D    +FV  D E+       + + + 
Sbjct: 60  LIFTIRTISEGGKFPGNEEEY----LEELKRAADSPGPDFV--DIELFLPDDAVKELINI 113

Query: 119 --RSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLT 176
             +  TKII+S Y +    P+ E++ + +    + GAD++K+ +  +S  D+  + E+  
Sbjct: 114 AKKGGTKIIMS-YHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITN 172

Query: 177 HCQ----VPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVY 228
                  VPLI +++G RG IS++LG  FG  L +GSLG  S PG  ++  L+++ 
Sbjct: 173 KVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLRELL 228

This model detects 3-dehydroquinate dehydratase, type I, either as a monofunctional protein or as a domain of a larger, multifunctional protein. It is often found fused to shikimate 5-dehydrogenase (EC 1.1.1.25), and sometimes additional domains. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by the model TIGR01088 [Amino acid biosynthesis, Aromatic amino acid family]. Length = 228

>gnl|CDD|172521 PRK14027, PRK14027, quinate/shikimate dehydrogenase; Provisional

 Score = 90.9 bits (225), Expect = 2e-20
 Identities = 80/289 (27%), Positives = 123/289 (42%), Gaps = 32/289 (11%)

Query: 234 NPDTKIFGLVSNPVGHSKGPILHNP-------AFRHTRFNGIYVPMLVDDVKEFFRTYSG 286
             D+ + GL+   +  S+ P +H         A  + R + +       D+K        
Sbjct: 1   MNDSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALY 60

Query: 287 TDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIE 346
             F G ++  P+K+  +   DEV   A  +GAVNT++     G   G+NTD       +E
Sbjct: 61  LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGME 119

Query: 347 DALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKA 405
           + L         A   S       V VGAGG G A+A+   + G + + + + +  RA+A
Sbjct: 120 EGLPN-------AKLDS------VVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQA 166

Query: 406 LADAVSGEALHFEYLH-------EFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYEL 458
           LAD ++  A+  E +        E        + NA+ +GM P    +      L     
Sbjct: 167 LADVIN-NAVGREAVVGVDARGIEDVIAAADGVVNATPMGM-PAHPGTAFDVSCLTKDHW 224

Query: 459 VFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE 507
           V D VY P  T LL+ A  +G   + G  M I QA+  FRLFT GL P+
Sbjct: 225 VGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFT-GLEPD 272

Length = 283

>gnl|CDD|223782 COG0710, AroD, 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

 Score = 82.4 bits (204), Expect = 8e-18
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 22/237 (9%)

Query: 11  VCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQH-----PTLPAI 65
           +   +      E++   E++K   AD+VEL +D        EV ++ +      P  P I
Sbjct: 4   IIVPVVGLDIAELKEQAEKSKELDADIVELRVDL--LESNVEVLEVAKALREKDPDKPLI 61

Query: 66  VSYRLKS--SRKSSDEACKNTCLQVLRRALDL-DVEFVEMDYEVASDPLMSEIIYSRSNT 122
            ++R           E      +++L++  +L   ++++++   + +  + EII      
Sbjct: 62  FTFRTVKEGGEFPGSEEEY---IELLKKLAELNGPDYIDIELS-SPEDDVKEIIKFAKKH 117

Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAV--DSITDLAPVFEMLTHCQV 180
            +IVS Y +    P  E++ + +  M++ GAD++K  IAV   S  D+  + E     + 
Sbjct: 118 GVIVS-YHDFEKTPPLEEIIERLDKMESLGADIVK--IAVMPQSKEDVLDLLEATREFKE 174

Query: 181 ---PLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHIN 234
              P+I +++G  G IS++ GP FG  + Y SL   S PG  ++  L+++  L    
Sbjct: 175 AEKPVITISMGKTGKISRVAGPVFGSPITYASLDKPSAPGQISVDELRKILTLLGYI 231

Length = 231

>gnl|CDD|235036 PRK02412, aroD, 3-dehydroquinate dehydratase; Provisional

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 31/230 (13%)

Query: 19  TTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQH--------PTLPAIVSYRL 70
           T EE+ A         AD++E   D      IS+V+ ++             P + ++R 
Sbjct: 26  TLEEVLAEALAISKYDADIIEWRADF--LEKISDVESVLAAAPAIREKFAGKPLLFTFRT 83

Query: 71  KS---SRKSSDEACKNTCLQVLRRALDL-DVEFVEMDYEVASDP-LMSEII-YSRSNTKI 124
                    SDE      L +++  +     +++  D E+ S   ++ E++ ++  +   
Sbjct: 84  AKEGGEIALSDEEY----LALIKAVIKSGLPDYI--DVELFSGKDVVKEMVAFAHEHGVK 137

Query: 125 IVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAV------DSITDLAPVFEMLTHC 178
           +V SY +    P  E++ + +  M++ GAD++K  IAV      D +T L    EM    
Sbjct: 138 VVLSYHDFEKTPPKEEIVERLRKMESLGADIVK--IAVMPQSEQDVLTLLNATREMKELY 195

Query: 179 -QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQV 227
              PLI +++G  G IS+L G  FG    + SL   S PG  ++  L+++
Sbjct: 196 ADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVEDLRRI 245

Length = 253

>gnl|CDD|216527 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 18/115 (15%)

Query: 363 SPIAGKIFVLVGAGGAGRALAFGAKSRGAR-VIIFNRNYERAKALADAVSG--EALHFEY 419
             + GK  +L+GAG   R  A    S+GA+ + I NR  E+AK LA+      EAL  + 
Sbjct: 8   GDLKGKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFPVGGEALPLDE 67

Query: 420 LHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYE-----LVFD-AVYTPRN 468
           L E       +LA A  +    ++    + KE ++        L  D AV  PR+
Sbjct: 68  LEE-------LLAEADIVISATSAPTPIITKEMVEEALKARPLLFVDIAV--PRD 113

This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyzes the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyzes the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate. Length = 133

>gnl|CDD|184156 PRK13575, PRK13575, 3-dehydroquinate dehydratase; Provisional

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 23/208 (11%)

Query: 36  DLVELCIDSMEFSHISEVDKLIQ-----HPTLPAIVSYRLKSSRKSSDEACKNTCLQVLR 90
           D++EL ID  E   + ++ ++I        +   +V+YR    +    +   +  L +L 
Sbjct: 32  DIIELRIDQWENVTVDQLAEMITKLKVLQDSFKLLVTYR-TKLQGGYGQFTNDLYLNLLS 90

Query: 91  RALD------LDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDV 144
              +      +D+E+     ++  +     I + +   K +V S+ N    P  ++L  +
Sbjct: 91  DLANINGIDMIDIEW---QADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFI 147

Query: 145 IACMQATGADVMKLEIAVDSITDLAPVFEML------THCQVPLIALAVGSRGLISQLLG 198
              MQ    + +KL +   +  D+  + + +        C+V  + +++   GLIS+   
Sbjct: 148 FFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VGISMSKLGLISRTAQ 205

Query: 199 PKFGGFLVYGSLGGKSVPGLPTLVSLKQ 226
             FGG L YG +G    PG   +  LK 
Sbjct: 206 GVFGGALSYGCIGEPQAPGQIHVTDLKA 233

Length = 238

>gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism]

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNYERAKALADAVSGEALHFEYLHEF 423
           +  K  +++GAG  G  +A     +G  ++ I NR  ERA+ LA  +  EA+  E L E 
Sbjct: 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEA 235

Query: 424 FPEKGMILANASAIGMEPNSDQSPVPKEALKA--YELVFD-AVYTPRNT 469
             E  +++++ SA    P   +  V + ALK     L+ D AV  PR+ 
Sbjct: 236 LAEADVVISSTSA--PHPIITREMV-ERALKIRKRLLIVDIAV--PRDV 279

Length = 414

>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed

 Score = 52.5 bits (127), Expect = 3e-07
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 363 SPIAGKIFVLVGAGGAGRALAFGAKSRGAR-VIIFNRNYERAKALADAVSGEALHFE--- 418
             ++GK  +++GAG  G  +A     +G R + + NR  ERA+ LA+   GEA+  +   
Sbjct: 178 GDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELP 237

Query: 419 -YLHEF 423
             L E 
Sbjct: 238 EALAEA 243

Length = 423

>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of glutamyl-tRNA reductase

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 365 IAGKIFVLVGAGGAGR-ALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEF 423
           + GK  +++GAG  G  A    A    A + I NR YERA+ LA  + G A+  + L E 
Sbjct: 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLEL 235

Query: 424 FPEKGMILANASAIG-MEPNSDQSPVPKEALKAYELVFD-AVYTPRNT 469
             E  +++   SA G            K+      L+ D AV  PR+ 
Sbjct: 236 LNEADVVI---SATGAPHYAKIVERAMKKRSGKPRLIVDLAV--PRDI 278

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 311

>gnl|CDD|233242 TIGR01035, hemA, glutamyl-tRNA reductase

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEYLHEF 423
           + GK  +L+GAG  G  +A     +G  +++I NR YERA+ LA  + GEA+ FE L E+
Sbjct: 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEY 237

Query: 424 FPEKGMILANASA 436
             E  +++++  A
Sbjct: 238 LAEADIVISSTGA 250

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 417

>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 365 IAGKIFVLVGAGGA-GRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEALHFE 418
           + GK+ V+ G GG  G A+A      GA+V I +RN E+A+A+   +    GEAL  +
Sbjct: 8   LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVK 65

Length = 278

>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 362 TSPIAGKI-FVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
           T  + G++  V   A G GRA+A    + GA VI+ +   + A A A+ V   
Sbjct: 1   TRDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA 53

Length = 251

>gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 363 SPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
           + +AGK+ V+ GA  G G  LA    +RGA++ + +       ALA  + G+     
Sbjct: 5   TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLT 61

Length = 296

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 342 ISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE 401
           I   + A+R      G+      +AGK   +VG G  G  +A   K+ G +V+ ++R  E
Sbjct: 121 IVPCDAAVRAGGTKAGLIGRE--LAGKTVGIVGTGAIGLRVARLFKAFGCKVLAYSR-SE 177

Query: 402 RAKALADAVS 411
           + +A A  + 
Sbjct: 178 KEEAKALGIE 187

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

 Score = 38.6 bits (91), Expect = 0.004
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 371 VLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
            LV   + G GRA+A    + GA+V+I++ N E A+ALA  +   
Sbjct: 8   ALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA 52

Length = 246

>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated

 Score = 39.4 bits (93), Expect = 0.004
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 364 PIAGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG 412
           P+AGK+  LV   AGG G+A A    + GA V++ + + E A+A A  + G
Sbjct: 419 PLAGKV-ALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG 468

Length = 681

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	518
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	100.0
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	100.0
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	100.0
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	100.0
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	100.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	100.0
PRK12548	289	shikimate 5-dehydrogenase; Provisional	100.0
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	100.0
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	100.0
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	100.0
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	100.0
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	100.0
COG0710	231	AroD 3-dehydroquinate dehydratase [Amino acid tran	100.0
TIGR01093	228	aroD 3-dehydroquinate dehydratase, type I. Type II	100.0
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	100.0
cd00502	225	DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat	100.0
PRK13575	238	3-dehydroquinate dehydratase; Provisional	100.0
PRK13576	216	3-dehydroquinate dehydratase; Provisional	100.0
PRK01261	229	aroD 3-dehydroquinate dehydratase; Provisional	100.0
KOG0692	595	consensus Pentafunctional AROM protein [Amino acid	100.0
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	99.95
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.91
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.91
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	99.64
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	99.6
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	99.5
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.4
PRK08291	330	ectoine utilization protein EutC; Validated	99.32
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	99.31
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	99.26
PRK13940	414	glutamyl-tRNA reductase; Provisional	99.26
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.24
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	99.18
PLN00203	519	glutamyl-tRNA reductase	98.8
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.77
PRK06141	314	ornithine cyclodeaminase; Validated	98.61
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.59
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.59
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.54
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.52
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.43
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.42
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.36
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.34
PRK08618	325	ornithine cyclodeaminase; Validated	98.32
PRK07340	304	ornithine cyclodeaminase; Validated	98.26
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.23
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.23
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
PRK14982	340	acyl-ACP reductase; Provisional	98.17
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	98.13
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.13
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.07
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.05
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.04
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.02
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.01
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.95
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.93
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.91
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.88
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.88
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.85
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.85
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.85
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.82
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.82
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.8
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.8
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.79
PRK06046	326	alanine dehydrogenase; Validated	97.75
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.71
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.68
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.65
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.65
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.65
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.63
PRK06823	315	ornithine cyclodeaminase; Validated	97.61
KOG0409	327	consensus Predicted dehydrogenase [General functio	97.61
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.6
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.57
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.56
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.55
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.55
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.55
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.54
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.53
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.53
PLN02928	347	oxidoreductase family protein	97.52
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.5
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.49
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.47
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.46
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.45
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.44
PRK08328	231	hypothetical protein; Provisional	97.44
PRK13243	333	glyoxylate reductase; Reviewed	97.44
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.44
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.43
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.43
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.43
PRK08655	437	prephenate dehydrogenase; Provisional	97.43
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.42
PRK06407	301	ornithine cyclodeaminase; Provisional	97.42
PRK06199	379	ornithine cyclodeaminase; Validated	97.36
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.36
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.35
PRK07589	346	ornithine cyclodeaminase; Validated	97.35
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.35
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.35
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.33
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.28
PRK07417	279	arogenate dehydrogenase; Reviewed	97.28
PLN02256	304	arogenate dehydrogenase	97.26
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.25
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.24
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.23
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	97.22
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.21
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.21
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.12
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.1
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	97.1
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.1
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.08
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.07
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.07
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.07
PLN02494	477	adenosylhomocysteinase	97.07
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.07
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.06
PRK13403	335	ketol-acid reductoisomerase; Provisional	97.04
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.01
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.0
PRK05866	293	short chain dehydrogenase; Provisional	96.98
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.97
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.96
PRK06545	359	prephenate dehydrogenase; Validated	96.95
PRK06436	303	glycerate dehydrogenase; Provisional	96.95
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.95
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.94
PLN02712	667	arogenate dehydrogenase	96.93
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.91
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.91
PLN02712	667	arogenate dehydrogenase	96.91
PRK05872	296	short chain dehydrogenase; Provisional	96.86
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.85
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.84
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.84
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.84
PRK12480	330	D-lactate dehydrogenase; Provisional	96.84
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.84
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.84
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.84
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.83
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.83
PRK08605	332	D-lactate dehydrogenase; Validated	96.83
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.8
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.8
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.77
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.76
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.76
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.75
PRK07060	245	short chain dehydrogenase; Provisional	96.75
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.75
PRK08507	275	prephenate dehydrogenase; Validated	96.74
PRK07574	385	formate dehydrogenase; Provisional	96.72
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.71
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.69
PRK06139	330	short chain dehydrogenase; Provisional	96.68
PRK06057	255	short chain dehydrogenase; Provisional	96.68
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.67
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.67
PRK08818	370	prephenate dehydrogenase; Provisional	96.66
PRK06196	315	oxidoreductase; Provisional	96.66
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.65
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.64
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.63
PLN03139	386	formate dehydrogenase; Provisional	96.63
PRK07825	273	short chain dehydrogenase; Provisional	96.62
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.62
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.62
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.61
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.61
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.61
PLN03209	576	translocon at the inner envelope of chloroplast su	96.59
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.59
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.59
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.58
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.56
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	96.55
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.55
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	96.53
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.52
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.51
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.51
KOG1208	314	consensus Dehydrogenases with different specificit	96.5
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.48
PRK08339	263	short chain dehydrogenase; Provisional	96.48
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.46
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.43
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.43
PRK05854	313	short chain dehydrogenase; Provisional	96.42
PRK08223	287	hypothetical protein; Validated	96.42
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	96.41
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.41
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.4
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	96.38
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.37
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.36
KOG3007	333	consensus Mu-crystallin [Amino acid transport and	96.35
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.34
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.34
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.33
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.32
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.32
PRK07680	273	late competence protein ComER; Validated	96.31
PLN02688	266	pyrroline-5-carboxylate reductase	96.3
PRK05867	253	short chain dehydrogenase; Provisional	96.3
PRK06500	249	short chain dehydrogenase; Provisional	96.29
PRK08862	227	short chain dehydrogenase; Provisional	96.28
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.27
PRK06487	317	glycerate dehydrogenase; Provisional	96.26
COG0673	342	MviM Predicted dehydrogenases and related proteins	96.25
PRK06932	314	glycerate dehydrogenase; Provisional	96.25
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	96.25
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.23
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.21
PLN02477	410	glutamate dehydrogenase	96.21
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.21
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.19
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.19
PLN02858	1378	fructose-bisphosphate aldolase	96.18
PRK08265	261	short chain dehydrogenase; Provisional	96.16
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.15
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.15
PRK07063	260	short chain dehydrogenase; Provisional	96.15
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.13
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.13
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.13
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.11
PLN02858	1378	fructose-bisphosphate aldolase	96.1
PRK12367	245	short chain dehydrogenase; Provisional	96.1
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.1
PRK06182	273	short chain dehydrogenase; Validated	96.1
PRK12829	264	short chain dehydrogenase; Provisional	96.1
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.1
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	96.1
PLN02780	320	ketoreductase/ oxidoreductase	96.09
PRK12742	237	oxidoreductase; Provisional	96.08
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	96.07
PRK07478	254	short chain dehydrogenase; Provisional	96.07
PLN02306	386	hydroxypyruvate reductase	96.05
PRK05717	255	oxidoreductase; Validated	96.05
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.02
PRK06949	258	short chain dehydrogenase; Provisional	96.01
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.0
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.99
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	95.98
PRK09414	445	glutamate dehydrogenase; Provisional	95.97
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.97
KOG0725	270	consensus Reductases with broad range of substrate	95.96
PRK09242	257	tropinone reductase; Provisional	95.96
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.95
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.95
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.95
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	95.95
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	95.95
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.94
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.94
PRK09186	256	flagellin modification protein A; Provisional	95.93
PRK06180	277	short chain dehydrogenase; Provisional	95.93
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.93
PRK08703	239	short chain dehydrogenase; Provisional	95.92
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.91
PRK07062	265	short chain dehydrogenase; Provisional	95.9
PRK07774	250	short chain dehydrogenase; Provisional	95.88
PRK06125	259	short chain dehydrogenase; Provisional	95.85
PRK07890	258	short chain dehydrogenase; Provisional	95.83
PRK06172	253	short chain dehydrogenase; Provisional	95.83
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.83
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.82
PRK08589	272	short chain dehydrogenase; Validated	95.81
PRK09291	257	short chain dehydrogenase; Provisional	95.8
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.79
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	95.79
PRK07814	263	short chain dehydrogenase; Provisional	95.78
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.78
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.77
PRK06484	520	short chain dehydrogenase; Validated	95.73
PRK14030	445	glutamate dehydrogenase; Provisional	95.73
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.71
PRK06197	306	short chain dehydrogenase; Provisional	95.71
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	95.68
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	95.68
PRK07035	252	short chain dehydrogenase; Provisional	95.67
PRK07831	262	short chain dehydrogenase; Provisional	95.67
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	95.67
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	95.65
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.65
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	95.63
PRK07109	334	short chain dehydrogenase; Provisional	95.63
PRK07067	257	sorbitol dehydrogenase; Provisional	95.61
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.61
PRK05876	275	short chain dehydrogenase; Provisional	95.61
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.6
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.6
PRK06194	287	hypothetical protein; Provisional	95.59
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	95.58
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.57
PRK07411	390	hypothetical protein; Validated	95.56
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.56
PRK06720	169	hypothetical protein; Provisional	95.56
PRK06484	520	short chain dehydrogenase; Validated	95.55
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.54
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.54
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	95.54
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.54
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	95.53
PRK09496	453	trkA potassium transporter peripheral membrane com	95.52
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.52
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.5
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.48
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.48
COG3268	382	Uncharacterized conserved protein [Function unknow	95.48
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.47
PLN02253	280	xanthoxin dehydrogenase	95.46
PRK06483	236	dihydromonapterin reductase; Provisional	95.45
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.44
PRK09072	263	short chain dehydrogenase; Provisional	95.44
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.43
PRK07576	264	short chain dehydrogenase; Provisional	95.43
PRK07677	252	short chain dehydrogenase; Provisional	95.42
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	95.42
PRK06138	252	short chain dehydrogenase; Provisional	95.42
PRK07326	237	short chain dehydrogenase; Provisional	95.4
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.4
PRK08324	681	short chain dehydrogenase; Validated	95.38
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.38
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.36
PRK05875	276	short chain dehydrogenase; Provisional	95.35
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.35
PRK12939	250	short chain dehydrogenase; Provisional	95.33
PRK07454	241	short chain dehydrogenase; Provisional	95.32
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	95.32
PRK12828	239	short chain dehydrogenase; Provisional	95.28
PRK08643	256	acetoin reductase; Validated	95.28
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.24
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	95.24
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.23
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.23
PRK09496	453	trkA potassium transporter peripheral membrane com	95.22
PRK05993	277	short chain dehydrogenase; Provisional	95.22
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	95.21
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.2
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	95.19
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.18
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.18
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.18
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.15
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.15
PRK08251	248	short chain dehydrogenase; Provisional	95.14
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	95.13
PRK14031	444	glutamate dehydrogenase; Provisional	95.13
PRK08263	275	short chain dehydrogenase; Provisional	95.12
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.1
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	95.09
PRK06101	240	short chain dehydrogenase; Provisional	95.08
PRK05884	223	short chain dehydrogenase; Provisional	95.08
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	95.07
PRK08267	260	short chain dehydrogenase; Provisional	95.07
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.07
PRK07024	257	short chain dehydrogenase; Provisional	95.07
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.07
PRK08303	305	short chain dehydrogenase; Provisional	95.06
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.06
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	95.05
PRK07074	257	short chain dehydrogenase; Provisional	95.03
PRK06940	275	short chain dehydrogenase; Provisional	95.03
PRK08628	258	short chain dehydrogenase; Provisional	94.99
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.97
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	94.96
PRK08340	259	glucose-1-dehydrogenase; Provisional	94.94
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	94.91
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	94.9
PRK07904	253	short chain dehydrogenase; Provisional	94.9
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.89
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	94.89
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.88
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.87
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	94.86
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.86
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.86
PRK06914	280	short chain dehydrogenase; Provisional	94.85
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	94.8
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	94.79
PRK07102	243	short chain dehydrogenase; Provisional	94.79
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.78
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	94.77
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	94.76
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.74
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	94.7
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	94.65
PRK08017	256	oxidoreductase; Provisional	94.64
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	94.63
PRK14851	679	hypothetical protein; Provisional	94.63
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	94.62
PRK12331	448	oxaloacetate decarboxylase; Provisional	94.61
PRK12862	763	malic enzyme; Reviewed	94.6
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	94.59
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	94.59
PRK06841	255	short chain dehydrogenase; Provisional	94.58
PRK07791	286	short chain dehydrogenase; Provisional	94.56
PRK10538	248	malonic semialdehyde reductase; Provisional	94.55
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	94.52
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	94.5
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.47
PRK07806	248	short chain dehydrogenase; Provisional	94.45
PTZ00117	319	malate dehydrogenase; Provisional	94.43
PRK05225	487	ketol-acid reductoisomerase; Validated	94.43
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.41
PRK06198	260	short chain dehydrogenase; Provisional	94.4
PRK08936	261	glucose-1-dehydrogenase; Provisional	94.4
PRK06114	254	short chain dehydrogenase; Provisional	94.38
PRK07832	272	short chain dehydrogenase; Provisional	94.36
CHL00194	317	ycf39 Ycf39; Provisional	94.32
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.31
PRK06181	263	short chain dehydrogenase; Provisional	94.31
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	94.3
PLN02896	353	cinnamyl-alcohol dehydrogenase	94.29
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.27
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.25
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	94.24
COG5322	351	Predicted dehydrogenase [General function predicti	94.21
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	94.18
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	94.16
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.15
PRK06398	258	aldose dehydrogenase; Validated	94.15
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	94.14
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.12
PRK05599	246	hypothetical protein; Provisional	94.11
PRK13303	265	L-aspartate dehydrogenase; Provisional	94.11
PRK12747	252	short chain dehydrogenase; Provisional	94.08
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	94.06
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.04
PRK08264	238	short chain dehydrogenase; Validated	93.99
PRK07856	252	short chain dehydrogenase; Provisional	93.99
PRK06223	307	malate dehydrogenase; Reviewed	93.95
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	93.92
TIGR02415	254	23BDH acetoin reductases. One member of this famil	93.91
PRK12746	254	short chain dehydrogenase; Provisional	93.86
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	93.86
PRK10637	457	cysG siroheme synthase; Provisional	93.85
PRK06523	260	short chain dehydrogenase; Provisional	93.84
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	93.82
PRK06924	251	short chain dehydrogenase; Provisional	93.81
PLN02602	350	lactate dehydrogenase	93.81
PLN02586	360	probable cinnamyl alcohol dehydrogenase	93.8
PRK07201	657	short chain dehydrogenase; Provisional	93.79
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.79
PRK05650	270	short chain dehydrogenase; Provisional	93.78
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	93.77
PLN02214	342	cinnamoyl-CoA reductase	93.76
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	93.76
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	93.75
PRK08226	263	short chain dehydrogenase; Provisional	93.71
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	93.71
PRK05855	582	short chain dehydrogenase; Validated	93.68
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	93.66
PRK08278	273	short chain dehydrogenase; Provisional	93.64
KOG2733	423	consensus Uncharacterized membrane protein [Functi	93.64
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.63
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.61
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	93.59
PRK05693	274	short chain dehydrogenase; Provisional	93.59
PRK06482	276	short chain dehydrogenase; Provisional	93.59
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	93.59
PRK11730	715	fadB multifunctional fatty acid oxidation complex	93.56
PRK14041	467	oxaloacetate decarboxylase; Provisional	93.55
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	93.52
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	93.5
PRK07775	274	short chain dehydrogenase; Provisional	93.48
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	93.47
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	93.46
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.44
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	93.41
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	93.4

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=100.00  E-value=1.3e-119  Score=975.65  Aligned_cols=508  Identities=51%  Similarity=0.859  Sum_probs=458.6

Q ss_pred             cccCCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcH
Q 010101            4 AAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACK   82 (518)
Q Consensus         4 ~~~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~   82 (518)
                      |++++|+||+||++++.++++.+++++...++|+||||+|+|. .+..+++..+++..++|+|||+|+++|||.|+++ +
T Consensus        18 ~~~~~~~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~eGG~~~~~-~   96 (529)
T PLN02520         18 VRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKWEGGQYEGD-E   96 (529)
T ss_pred             cccCCCEEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHHHCCCCCCC-H
Confidence            7899999999999999999999988887789999999999998 4444567777777889999999999999999999 9


Q ss_pred             HHHHHHHHHHhhcCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEccc
Q 010101           83 NTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAV  162 (518)
Q Consensus        83 ~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~  162 (518)
                      ++|+++++.+++.|+||||||++..++..+.+...|+.++++|+||||| ++||+.++|.+++++|.++||||+|||+||
T Consensus        97 ~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f-~~tP~~~el~~~~~~~~~~gaDi~Kia~~~  175 (529)
T PLN02520         97 NKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNY-ENTPSVEELGNLVARIQATGADIVKIATTA  175 (529)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCC-CCCCCHHHHHHHHHHHHHhCCCEEEEecCC
Confidence            9999999999999999999999988766555544666799999999999 999999999999999999999999999999


Q ss_pred             CCcccHHHHHHHhccCCCCEEEEecCCccchhhhcCCCCCCcccccccC--CCCCCCCCCHHHHHHHhhhccCCCCceEE
Q 010101          163 DSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLG--GKSVPGLPTLVSLKQVYQLEHINPDTKIF  240 (518)
Q Consensus       163 ~~~~D~~~l~~~~~~~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~--~~sApGQ~~~~~l~~~~~~~~~~~~t~~~  240 (518)
                      ++.+|++++++++.+.++|+|+|+||+.|++||+++++|||++||++++  .++||||+++++++++|++.+++++|++|
T Consensus       176 ~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~t~~~  255 (529)
T PLN02520        176 LDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQIGPDTKVY  255 (529)
T ss_pred             CCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHHHHHHHhhhhcccCCceEE
Confidence            9999999999988777889999999999999999999999999999987  45999999999999999999999999999


Q ss_pred             EEecCCCCcccCHHHHHHHHHHcCCCceEEecccCcHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhhhcCcee
Q 010101          241 GLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVN  320 (518)
Q Consensus       241 ~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavN  320 (518)
                      ||||+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||+++++|+|++|+.|+.+||||
T Consensus       256 ~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~A~~iGAVN  335 (529)
T PLN02520        256 GIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPIAKSIGAIN  335 (529)
T ss_pred             EEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHHHHHhCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          321 TIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       321 Ti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      ||++++++|+|+||||||.||+.+|++.+...+.   .+.....+++|+++|+|+||+|++++++|++.|++|+++||+.
T Consensus       336 Tvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~---~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~  412 (529)
T PLN02520        336 TIIRRPSDGKLVGYNTDYIGAISAIEDGLRASGS---SPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY  412 (529)
T ss_pred             EEEEeCCCCEEEEEcccHHHHHHHHHhhhccccc---ccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            9998622789999999999999999753321000   0000135778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCC
Q 010101          401 ERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGA  480 (518)
Q Consensus       401 ~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~  480 (518)
                      ++++++++.++...+.++++.+.....+|+||||||+||.|..+..|++..++++..+|+|++|+|.+|+|+++|+++||
T Consensus       413 e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~  492 (529)
T PLN02520        413 ERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLREAEESGA  492 (529)
T ss_pred             HHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHHHHHHHHCCC
Confidence            99999999886555555554331234579999999999998777778888889999999999999999999999999999


Q ss_pred             eeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          481 TVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       481 ~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      ++++|++||++||+.||++|||.++|.+.|++++.+
T Consensus       493 ~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~l~~  528 (529)
T PLN02520        493 IIVSGTEMFIRQAYEQFERFTGLPAPKELFREIMSK  528 (529)
T ss_pred             eEeCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence            999999999999999999999999999999986643

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=100.00  E-value=1.4e-104  Score=849.67  Aligned_cols=458  Identities=28%  Similarity=0.445  Sum_probs=410.1

Q ss_pred             eEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHHHHH
Q 010101           10 LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQV   88 (518)
Q Consensus        10 ~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l   88 (518)
                      |||+||++++.+|++++++.+. .++|+||||+|+|. .+.. .+..+++..+.|++ |+|+.++     ++ +++|+++
T Consensus         1 ~icv~i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~-~~~~l~~~~~~pil-T~R~~~~-----~~-~~~~~~~   71 (477)
T PRK09310          1 MLCATISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDL-ELKKLIELAPIPIL-TWKKHES-----CS-QAAWIDK   71 (477)
T ss_pred             CEEEEecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHH-HHHHHHhcCCCceE-EeccCcc-----CC-HHHHHHH
Confidence            6999999999999999998876 78999999999998 4433 36777765566766 9999874     46 8999999


Q ss_pred             HHHHhhcCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccCCcccH
Q 010101           89 LRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDL  168 (518)
Q Consensus        89 l~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~  168 (518)
                      ++.++++|+||||||++.+++.++++...+ +++|+|+||||| +    .+++.+++++|.++||||+|||+||++.+|+
T Consensus        72 l~~~~~~~~d~vDiEl~~~~~~~~~l~~~~-~~~kvI~S~Hdf-~----~~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~  145 (477)
T PRK09310         72 MQSLAKLNPNYLDIDKDFPKEALIRIRKLH-PKIKIILSYHTS-E----HEDIIQLYNEMLASAADYYKIAVSSSSSTDL  145 (477)
T ss_pred             HHHHHHhCCCEEEEEecCCHHHHHHHHHhC-CCCEEEEEcCCC-C----cchHHHHHHHHHHcCCCEEEEeeCCCCHHHH
Confidence            999999999999999999888887775443 599999999999 3    3689999999999999999999999999999


Q ss_pred             HHHHHHhccCCCCEEEEecCCccchhhhcCCCCCCcccccccCC--CCCCCCCCHHHHHHHhhhccCCCCceEEEEecCC
Q 010101          169 APVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGG--KSVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNP  246 (518)
Q Consensus       169 ~~l~~~~~~~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~--~sApGQ~~~~~l~~~~~~~~~~~~t~~~~liG~p  246 (518)
                      +++++++.....|+|+|+||+.|++||+++++|||++||+++..  ++||||++++++. .|++.+++++|++|||+|+|
T Consensus       146 l~ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~~l~-~~~~~~~~~~t~~~~liG~p  224 (477)
T PRK09310        146 LNIIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHLL-FYNYANLSAQSPIYGLIGDP  224 (477)
T ss_pred             HHHHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHHHHH-hcchhccCCCceEEEEECCC
Confidence            99999988888899999999999999999999999999999865  4799999999998 57899999899999999999


Q ss_pred             CCcccCHHHHHHHHHHcCCCceEEecccC--cHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEE
Q 010101          247 VGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIR  324 (518)
Q Consensus       247 i~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~  324 (518)
                      |+||+||.|||++|+++|+|++|.+++++  +++++++.++.++|.|+|||||||++|++|+|++|+.|+.+||||||++
T Consensus       225 i~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~  304 (477)
T PRK09310        225 VDRSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVF  304 (477)
T ss_pred             cccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEe
Confidence            99999999999999999999999999984  7999999999999999999999999999999999999999999999998


Q ss_pred             eccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 010101          325 RPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAK  404 (518)
Q Consensus       325 ~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~  404 (518)
                      +  +|+|+||||||.||+.+|++.     +        ..+++++++|+|+||+|+++++.|.+.|++|+++||+.++++
T Consensus       305 ~--~g~l~G~NTD~~G~~~~l~~~-----~--------~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~  369 (477)
T PRK09310        305 R--NGKIEGYNTDGEGLFSLLKQK-----N--------IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAE  369 (477)
T ss_pred             e--CCEEEEEecCHHHHHHHHHhc-----C--------CCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            7  899999999999999998641     2        456789999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeec
Q 010101          405 ALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVS  484 (518)
Q Consensus       405 ~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~  484 (518)
                      ++++.++....+++++..  ..++|+||||||.||.       ++. .+.  .+|+|++|+|.+|+|+++|+++||++++
T Consensus       370 ~la~~~~~~~~~~~~~~~--l~~~DiVInatP~g~~-------~~~-~l~--~~v~D~~Y~P~~T~ll~~A~~~G~~~~~  437 (477)
T PRK09310        370 ALASRCQGKAFPLESLPE--LHRIDIIINCLPPSVT-------IPK-AFP--PCVVDINTLPKHSPYTQYARSQGSSIIY  437 (477)
T ss_pred             HHHHHhccceechhHhcc--cCCCCEEEEcCCCCCc-------chh-HHh--hhEEeccCCCCCCHHHHHHHHCcCEEEC
Confidence            999887654445555432  3578999999999972       222 233  3899999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHhcCCCCCHHHH
Q 010101          485 GVEMFIRQALGQFRLFTGGLAPEDFM  510 (518)
Q Consensus       485 G~~ml~~Qa~~qf~lw~g~~~p~~~~  510 (518)
                      |++||++||+.||++|||.+.+.+..
T Consensus       438 G~~Ml~~Qa~~~f~lw~g~~~~~~~~  463 (477)
T PRK09310        438 GYEMFAEQALLQFRLWFPTLLFKHLE  463 (477)
T ss_pred             cHHHHHHHHHHHHHHHcCCcccHHHH
Confidence            99999999999999999999987653

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=9.9e-72  Score=552.78  Aligned_cols=271  Identities=40%  Similarity=0.630  Sum_probs=243.0

Q ss_pred             CCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEecccC--cHHHHHHHhcCCCCCEEEecccchHHHHhcccccC
Q 010101          233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVH  310 (518)
Q Consensus       233 ~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  310 (518)
                      ++..|++|+|||+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++.+++.|+|||||||+++++|+|++|
T Consensus         2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~   81 (283)
T COG0169           2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS   81 (283)
T ss_pred             CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence            4667899999999999999999999999999999999999995  99999999999999999999999999999999999


Q ss_pred             hhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCC
Q 010101          311 PLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG  390 (518)
Q Consensus       311 ~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G  390 (518)
                      +.|+.+||||||+++. +|+|+||||||.||.++|++...           ....++++++|+||||+|||++++|++.|
T Consensus        82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~~-----------~~~~~~~~vlilGAGGAarAv~~aL~~~g  149 (283)
T COG0169          82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFGL-----------PVDVTGKRVLILGAGGAARAVAFALAEAG  149 (283)
T ss_pred             HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcCC-----------CcccCCCEEEEECCcHHHHHHHHHHHHcC
Confidence            9999999999999982 49999999999999999875210           13456899999999999999999999999


Q ss_pred             C-eEEEEeCCHHHHHHHHHHhcCcc-----cccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEee
Q 010101          391 A-RVIIFNRNYERAKALADAVSGEA-----LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVY  464 (518)
Q Consensus       391 ~-~v~i~nRt~~ka~~la~~~~~~~-----~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y  464 (518)
                      + +|+|+|||.+|+++|++.++...     ..+.++..  ..++|+||||||+||.+..+..+++.+.+++..+|+|++|
T Consensus       150 ~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~--~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY  227 (283)
T COG0169         150 AKRITVVNRTRERAEELADLFGELGAAVEAAALADLEG--LEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVY  227 (283)
T ss_pred             CCEEEEEeCCHHHHHHHHHHhhhccccccccccccccc--ccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEecc
Confidence            8 99999999999999999997432     22333322  1258999999999999865455677778999999999999


Q ss_pred             CCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 010101          465 TPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ  517 (518)
Q Consensus       465 ~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~~  517 (518)
                      +|.+|||+++|+++|+++++|++||++||++||++|||.++|.+.|++++.+.
T Consensus       228 ~P~~TplL~~A~~~G~~~idGl~Mlv~Qaa~aF~lwtg~~p~~~~~~~a~~~~  280 (283)
T COG0169         228 NPLETPLLREARAQGAKTIDGLGMLVHQAAEAFELWTGVEPPVDVMKEALIEA  280 (283)
T ss_pred             CCCCCHHHHHHHHcCCeEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988764

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-70  Score=549.90  Aligned_cols=265  Identities=28%  Similarity=0.398  Sum_probs=234.9

Q ss_pred             CceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc-------CcHHHHHHHhcCCCCCEEEecccchHHHHhcccc
Q 010101          236 DTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV-------DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDE  308 (518)
Q Consensus       236 ~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~-------~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~  308 (518)
                      ++++|||||+||+||+||.|||++|+++|+|++|.++++       ++++++++.++.++|.|+|||||||+++++|+|+
T Consensus         3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~   82 (283)
T PRK14027          3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_pred             CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence            478999999999999999999999999999999999996       3789999999888999999999999999999999


Q ss_pred             cChhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHH
Q 010101          309 VHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKS  388 (518)
Q Consensus       309 ~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~  388 (518)
                      +|+.|+.+||||||++++ +|+|+||||||.||+.+|++.     +        ...++++++|+||||+|||++++|.+
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~Gf~~~L~~~-----~--------~~~~~k~vlilGaGGaarAi~~aL~~  148 (283)
T PRK14027         83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG-----L--------PNAKLDSVVQVGAGGVGNAVAYALVT  148 (283)
T ss_pred             CCHHHHHhCCceEEEECC-CCcEEEEcCCHHHHHHHHHhc-----C--------cCcCCCeEEEECCcHHHHHHHHHHHH
Confidence            999999999999999852 899999999999999998641     1        23568999999999999999999999


Q ss_pred             CCC-eEEEEeCCHHHHHHHHHHhcCcc----c---ccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEE
Q 010101          389 RGA-RVIIFNRNYERAKALADAVSGEA----L---HFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVF  460 (518)
Q Consensus       389 ~G~-~v~i~nRt~~ka~~la~~~~~~~----~---~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~  460 (518)
                      +|+ +|+|+|||.+|+++|++.+....    +   ++.++.. ....+|+||||||+||.+. +..|++.+.+.+..+|+
T Consensus       149 ~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~-~~~~~divINaTp~Gm~~~-~~~~~~~~~l~~~~~v~  226 (283)
T PRK14027        149 HGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIED-VIAAADGVVNATPMGMPAH-PGTAFDVSCLTKDHWVG  226 (283)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHH-HHhhcCEEEEcCCCCCCCC-CCCCCCHHHcCCCcEEE
Confidence            999 99999999999999998874211    1   1111111 2346899999999999875 44567777788889999


Q ss_pred             EEeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          461 DAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       461 Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      |++|+|.+|+|+++|+++||++++|++||++||++||++|||.++|.+.|++++.+
T Consensus       227 D~vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lw~G~~~~~~~~~~~~~~  282 (283)
T PRK14027        227 DVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLS  282 (283)
T ss_pred             EcccCCCCCHHHHHHHHCCCEEEccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999997653

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=100.00  E-value=4.2e-70  Score=547.81  Aligned_cols=266  Identities=32%  Similarity=0.534  Sum_probs=236.1

Q ss_pred             CCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEecccC--cHHHHHHHhcCCCCCEEEecccchHHHHhcccccC
Q 010101          233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVH  310 (518)
Q Consensus       233 ~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  310 (518)
                      ++.+|++|||||+||+||+||.|||++|+++|+|++|.+++++  +|+++++.++..+|.|+|||||||++|++|+|++|
T Consensus         3 ~~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~   82 (288)
T PRK12749          3 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELT   82 (288)
T ss_pred             cCCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCC
Confidence            4567899999999999999999999999999999999999994  79999999988899999999999999999999999


Q ss_pred             hhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCC
Q 010101          311 PLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG  390 (518)
Q Consensus       311 ~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G  390 (518)
                      +.|+.+||||||+++  +|+|+||||||.||+.+|++.     +        .++++++++|+||||+|||++++|..+|
T Consensus        83 ~~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~-----~--------~~~~~k~vlvlGaGGaarAi~~~l~~~g  147 (288)
T PRK12749         83 PAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----G--------FDIKGKTMVLLGAGGASTAIGAQGAIEG  147 (288)
T ss_pred             HHHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhc-----C--------CCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999876  899999999999999998641     1        4567899999999999999999999999


Q ss_pred             C-eEEEEeCC---HHHHHHHHHHhcCcc---cccccc------cccCCCCccEEEEcCCCCCCCCCCCCC-CChhhhcCC
Q 010101          391 A-RVIIFNRN---YERAKALADAVSGEA---LHFEYL------HEFFPEKGMILANASAIGMEPNSDQSP-VPKEALKAY  456 (518)
Q Consensus       391 ~-~v~i~nRt---~~ka~~la~~~~~~~---~~~~~l------~~~~~~~~divInatp~g~~~~~~~~~-~~~~~l~~~  456 (518)
                      + +|+|+||+   .+|+++|++.++...   +.+.++      .+ ...++|+||||||+||.|..+..+ ++.+.+++.
T Consensus       148 ~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~-~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~  226 (288)
T PRK12749        148 LKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE-ALASADILTNGTKVGMKPLENESLVNDISLLHPG  226 (288)
T ss_pred             CCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh-hcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCC
Confidence            9 99999999   569999999885321   122222      11 235689999999999998655544 344567888


Q ss_pred             CEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010101          457 ELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV  514 (518)
Q Consensus       457 ~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~  514 (518)
                      .+|+|++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++
T Consensus       227 ~~v~D~vY~P~~T~ll~~A~~~G~~~~~Gl~ML~~Qa~~~f~lwtg~~~~~~~~~~~~  284 (288)
T PRK12749        227 LLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM  284 (288)
T ss_pred             CEEEEecCCCccCHHHHHHHHCCCeEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999865

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=5.9e-70  Score=546.79  Aligned_cols=265  Identities=30%  Similarity=0.403  Sum_probs=238.6

Q ss_pred             CCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEecccC-------cHHHHHHHhcCCCCCEEEecccchHHHHhccc
Q 010101          235 PDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD-------DVKEFFRTYSGTDFAGFSVGIPHKEPAVACCD  307 (518)
Q Consensus       235 ~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~-------~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d  307 (518)
                      ..+++|||||+||+||+||.|||++|+++|+|++|.+++++       +++++++.++..+|.|+|||||||+++++|+|
T Consensus         3 ~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~D   82 (284)
T PRK12549          3 RPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHLD   82 (284)
T ss_pred             ccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhc
Confidence            45789999999999999999999999999999999999863       68999999988899999999999999999999


Q ss_pred             ccChhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHH
Q 010101          308 EVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAK  387 (518)
Q Consensus       308 ~~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~  387 (518)
                      ++|+.|+.+||||||+++  +|+|+||||||.||+.+|+...             ..+.+++++|+|+||+||+++++|.
T Consensus        83 ~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-------------~~~~~k~vlIlGaGGaaraia~aL~  147 (284)
T PRK12549         83 ELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-------------PDASLERVVQLGAGGAGAAVAHALL  147 (284)
T ss_pred             cCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-------------cCccCCEEEEECCcHHHHHHHHHHH
Confidence            999999999999999987  8999999999999999987421             2456799999999999999999999


Q ss_pred             HCCC-eEEEEeCCHHHHHHHHHHhcCc-----ccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEE
Q 010101          388 SRGA-RVIIFNRNYERAKALADAVSGE-----ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFD  461 (518)
Q Consensus       388 ~~G~-~v~i~nRt~~ka~~la~~~~~~-----~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~D  461 (518)
                      +.|+ +|+|+||+.+|++++++.++..     ...++++.+ ...++|+||||||+||.+. +..|++.+++++..+|+|
T Consensus       148 ~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~-~~~~aDiVInaTp~Gm~~~-~~~~~~~~~l~~~~~v~D  225 (284)
T PRK12549        148 TLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAA-ALAAADGLVHATPTGMAKH-PGLPLPAELLRPGLWVAD  225 (284)
T ss_pred             HcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHh-hhCCCCEEEECCcCCCCCC-CCCCCCHHHcCCCcEEEE
Confidence            9999 9999999999999999987532     122333332 3467899999999999875 345788888999999999


Q ss_pred             EeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          462 AVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       462 i~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      ++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus       226 ivY~P~~T~ll~~A~~~G~~~~~G~~ML~~Qa~~~f~~wtg~~~~~~~~~~~~~~  280 (284)
T PRK12549        226 IVYFPLETELLRAARALGCRTLDGGGMAVFQAVDAFELFTGREPDAERMLAHFAS  280 (284)
T ss_pred             eeeCCCCCHHHHHHHHCCCeEecCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998865

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-68  Score=539.57  Aligned_cols=267  Identities=31%  Similarity=0.535  Sum_probs=238.1

Q ss_pred             CCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEecccC--cHHHHHHHhcCCCCCEEEecccchHHHHhcccccC
Q 010101          233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVH  310 (518)
Q Consensus       233 ~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  310 (518)
                      ++.+|++|||||+||+||+||.|||++|+++|+|+.|.+++++  ++.++++.++..+|.|+|||||||++|++|+|++|
T Consensus         5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~   84 (289)
T PRK12548          5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS   84 (289)
T ss_pred             cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence            5667889999999999999999999999999999999999994  79999999988899999999999999999999999


Q ss_pred             hhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCC
Q 010101          311 PLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG  390 (518)
Q Consensus       311 ~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G  390 (518)
                      +.|+.+||||||+++  +|+|+||||||.||+.+|++.     +        ..+++++++|+|+||+|||++++|++.|
T Consensus        85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~-----~--------~~~~~k~vlI~GAGGagrAia~~La~~G  149 (289)
T PRK12548         85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREH-----G--------VDVKGKKLTVIGAGGAATAIQVQCALDG  149 (289)
T ss_pred             HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhc-----C--------CCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999887  899999999999999998642     1        3467899999999999999999999999


Q ss_pred             C-eEEEEeCCH---HHHHHHHHHhcCcc-------ccccc---ccccCCCCccEEEEcCCCCCCCCCCCCCC-ChhhhcC
Q 010101          391 A-RVIIFNRNY---ERAKALADAVSGEA-------LHFEY---LHEFFPEKGMILANASAIGMEPNSDQSPV-PKEALKA  455 (518)
Q Consensus       391 ~-~v~i~nRt~---~ka~~la~~~~~~~-------~~~~~---l~~~~~~~~divInatp~g~~~~~~~~~~-~~~~l~~  455 (518)
                      + +|+|+||+.   ++++++++++....       .++++   +.+ ....+|+||||||+||.|..+..|+ +.+.+.+
T Consensus       150 ~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~-~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~  228 (289)
T PRK12548        150 AKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA-EIASSDILVNATLVGMKPNDGETNIKDTSVFRK  228 (289)
T ss_pred             CCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh-hhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCC
Confidence            9 699999997   89999988774211       12222   112 2346799999999999987666777 5567888


Q ss_pred             CCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010101          456 YELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVL  515 (518)
Q Consensus       456 ~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~  515 (518)
                      ..+|+|++|+|.+|+|+++|+++||++++|++||++||++||++|||+++|.+.|++++.
T Consensus       229 ~~~v~D~vY~P~~T~ll~~A~~~G~~~~~G~~ML~~Qa~~~f~lwtg~~~~~~~~~~~~~  288 (289)
T PRK12548        229 DLVVADTVYNPKKTKLLEDAEAAGCKTVGGLGMLLWQGAEAYKLYTGKDMPVEEVKELYF  288 (289)
T ss_pred             CCEEEEecCCCCCCHHHHHHHHCCCeeeCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999874

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=5.4e-68  Score=532.56  Aligned_cols=270  Identities=33%  Similarity=0.547  Sum_probs=242.3

Q ss_pred             CCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccC
Q 010101          233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVH  310 (518)
Q Consensus       233 ~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  310 (518)
                      ++.+|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++|+|++|
T Consensus         1 ~~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~   80 (278)
T PRK00258          1 ITGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELS   80 (278)
T ss_pred             CCCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCC
Confidence            356789999999999999999999999999999999999999  589999999988899999999999999999999999


Q ss_pred             hhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCC
Q 010101          311 PLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG  390 (518)
Q Consensus       311 ~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G  390 (518)
                      +.|+.+||||||+++  +|+|+||||||.||+.+|++.+    +        ..+.+++++|+|+||+||+++++|...|
T Consensus        81 ~~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~----~--------~~~~~k~vlVlGaGg~a~ai~~aL~~~g  146 (278)
T PRK00258         81 ERARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERL----G--------VDLKGKRILILGAGGAARAVILPLLDLG  146 (278)
T ss_pred             HHHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhcc----C--------CCCCCCEEEEEcCcHHHHHHHHHHHHcC
Confidence            999999999999976  8999999999999999986421    1        3567899999999999999999999999


Q ss_pred             C-eEEEEeCCHHHHHHHHHHhcCcc-ccc-ccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC
Q 010101          391 A-RVIIFNRNYERAKALADAVSGEA-LHF-EYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR  467 (518)
Q Consensus       391 ~-~v~i~nRt~~ka~~la~~~~~~~-~~~-~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~  467 (518)
                      + +|+|+||+.++++++++.++... +.+ .++.+ .+.++|+||||||+||.|..+..|++.+.+++..+|+|++|+|.
T Consensus       147 ~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~  225 (278)
T PRK00258        147 VAEITIVNRTVERAEELAKLFGALGKAELDLELQE-ELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPL  225 (278)
T ss_pred             CCEEEEEeCCHHHHHHHHHHhhhccceeecccchh-ccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCC
Confidence            6 99999999999999999886332 223 12222 45679999999999998865556777788999999999999999


Q ss_pred             chHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 010101          468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ  517 (518)
Q Consensus       468 ~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~~  517 (518)
                      +|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++.+.
T Consensus       226 ~T~ll~~A~~~G~~~~~G~~Ml~~Qa~~~f~~wtg~~~~~~~~~~~~~~~  275 (278)
T PRK00258        226 PTPFLAWAKAQGARTIDGLGMLVHQAAEAFELWTGVRPPVEPMLAALRAA  275 (278)
T ss_pred             CCHHHHHHHHCcCeecCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988653

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=7e-68  Score=526.72  Aligned_cols=262  Identities=31%  Similarity=0.436  Sum_probs=233.9

Q ss_pred             cCCCCceE-EEEecCCCCcccCHHHHHHHHHHcCCCceEEecccCcHHHHHHHhcCCCCCEEEecccchHHHHhcccccC
Q 010101          232 HINPDTKI-FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVH  310 (518)
Q Consensus       232 ~~~~~t~~-~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  310 (518)
                      +++++|++ |||||+|  ||+||.|||++|+++|+|++|.+++.++++++++.++..+|.|+|||||||++|++|+|++|
T Consensus         4 ~~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~   81 (272)
T PRK12550          4 MINKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELD   81 (272)
T ss_pred             cCCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCC
Confidence            46677885 9999999  77889999999999999999999998899999999988899999999999999999999999


Q ss_pred             hhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCC
Q 010101          311 PLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG  390 (518)
Q Consensus       311 ~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G  390 (518)
                      +.|+.+||||||+++  +|+|+||||||.||+++|++.     +        .. .+++++|+||||+|||++++|.++|
T Consensus        82 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-----~--------~~-~~~~vlilGaGGaarAi~~aL~~~g  145 (272)
T PRK12550         82 PSAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASY-----Q--------VP-PDLVVALRGSGGMAKAVAAALRDAG  145 (272)
T ss_pred             HHHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhc-----C--------CC-CCCeEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999887  899999999999999998641     1        22 3578999999999999999999999


Q ss_pred             C-eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC--CCCCCChhhhcCCCEEEEEeeCCC
Q 010101          391 A-RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS--DQSPVPKEALKAYELVFDAVYTPR  467 (518)
Q Consensus       391 ~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~--~~~~~~~~~l~~~~~v~Di~Y~P~  467 (518)
                      + +|+|+||+.+++++|++.++....  +++   ....+|+||||||+||.+..  +..|++.+.+++..+|+|++|+|.
T Consensus       146 ~~~i~i~nR~~~~a~~la~~~~~~~~--~~~---~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~  220 (272)
T PRK12550        146 FTDGTIVARNEKTGKALAELYGYEWR--PDL---GGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPA  220 (272)
T ss_pred             CCEEEEEeCCHHHHHHHHHHhCCcch--hhc---ccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCc
Confidence            9 899999999999999998753221  111   12458999999999998754  234677788999999999999999


Q ss_pred             chHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       468 ~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      +|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus       221 ~T~ll~~A~~~G~~~i~Gl~MLi~Qa~~~f~lwtg~~~~~~~~~~~~~~  269 (272)
T PRK12550        221 ETPLIRYARARGKTVITGAEVIALQAVEQFVLYTGVRPSDELIAEAAAF  269 (272)
T ss_pred             cCHHHHHHHHCcCeEeCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998754

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=100.00  E-value=3.8e-66  Score=519.31  Aligned_cols=263  Identities=26%  Similarity=0.393  Sum_probs=224.9

Q ss_pred             CceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEecccC---cHHHHHHHhcCCCCCEEEecccchHHHHhcccccChh
Q 010101          236 DTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD---DVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPL  312 (518)
Q Consensus       236 ~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~---~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~  312 (518)
                      .+++|||||+||+||+||.|||++|+++|+|+.|.++++.   ++.++++.++ .+|.|+|||||||+++++|+|++|+.
T Consensus         4 ~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~   82 (282)
T TIGR01809         4 GPKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDR   82 (282)
T ss_pred             CCeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHH
Confidence            3689999999999999999999999999999999999873   5788888774 49999999999999999999999999


Q ss_pred             hhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-
Q 010101          313 AKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-  391 (518)
Q Consensus       313 A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-  391 (518)
                      |+.+||||||++++ +|+|+||||||.||+.+|++.     +      ....+++++++|||+||+||+++++|.++|+ 
T Consensus        83 A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~-----~------~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~  150 (282)
T TIGR01809        83 ASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANI-----G------KFEPLAGFRGLVIGAGGTSRAAVYALASLGVT  150 (282)
T ss_pred             HHHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhh-----C------CccccCCceEEEEcCcHHHHHHHHHHHHcCCC
Confidence            99999999999853 789999999999999998641     1      0013578999999999999999999999999 


Q ss_pred             eEEEEeCCHHHHHHHHHHhcCcc--ccc---ccccccCCCCccEEEEcCCCCCCCCCCCCCCCh-------hhhcCCCEE
Q 010101          392 RVIIFNRNYERAKALADAVSGEA--LHF---EYLHEFFPEKGMILANASAIGMEPNSDQSPVPK-------EALKAYELV  459 (518)
Q Consensus       392 ~v~i~nRt~~ka~~la~~~~~~~--~~~---~~l~~~~~~~~divInatp~g~~~~~~~~~~~~-------~~l~~~~~v  459 (518)
                      +|+|+|||.+|+++|+++++...  ..+   +++.. ...++|+||||||+||...  ...+..       +.+++..+|
T Consensus       151 ~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~-~~~~~DiVInaTp~g~~~~--~~~l~~~~~~~~~~~~~~~~~v  227 (282)
T TIGR01809       151 DITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLA-IEKAAEVLVSTVPADVPAD--YVDLFATVPFLLLKRKSSEGIF  227 (282)
T ss_pred             eEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhh-cccCCCEEEECCCCCCCCC--HHHhhhhhhhhccccCCCCcEE
Confidence            89999999999999999886321  112   23323 3467899999999998532  211110       113467899


Q ss_pred             EEEeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010101          460 FDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV  514 (518)
Q Consensus       460 ~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~  514 (518)
                      +|++|+|.+|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++
T Consensus       228 ~D~vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~~  282 (282)
T TIGR01809       228 LDAAYDPWPTPLVAIVSAAGWRVISGLQMLLHQGFAQFEQWTGMPAPREAMACAL  282 (282)
T ss_pred             EEEeeCCCCCHHHHHHHHCCCEEECcHHHHHHHHHHHHHHHHCCCChHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999998864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=100.00  E-value=8e-65  Score=507.83  Aligned_cols=264  Identities=35%  Similarity=0.548  Sum_probs=234.8

Q ss_pred             eEEEEecCCCCcccCHHHHHHHHHHcCCCceEEecccC--cHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhhh
Q 010101          238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKS  315 (518)
Q Consensus       238 ~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  315 (518)
                      ++|||||+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++.++|.|+|||||||+++++|+|++|+.|+.
T Consensus         1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~   80 (270)
T TIGR00507         1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL   80 (270)
T ss_pred             CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence            47999999999999999999999999999999999994  7999999998889999999999999999999999999999


Q ss_pred             cCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEE
Q 010101          316 IGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVII  395 (518)
Q Consensus       316 iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i  395 (518)
                      +||||||+++  +|+|+||||||.||+.+|++ .    +        ...++++++|+|+||+|++++++|.+.|++|++
T Consensus        81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~-~----~--------~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v  145 (270)
T TIGR00507        81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLER-L----I--------PLRPNQRVLIIGAGGAARAVALPLLKADCNVII  145 (270)
T ss_pred             hCCceEEEee--CCEEEEEcCCHHHHHHHHHh-c----C--------CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Confidence            9999999977  89999999999999999864 1    1        234578999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHH
Q 010101          396 FNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLRE  474 (518)
Q Consensus       396 ~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~  474 (518)
                      +||+.++++++++.++... .....+.+....++|+||||||.||.+..+..+++.+.++++.+|+|++|+|.+|+|+++
T Consensus       146 ~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~  225 (270)
T TIGR00507       146 ANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPFLAE  225 (270)
T ss_pred             EeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHHHHH
Confidence            9999999999998875311 111111111234689999999999988665566777788888999999999999999999


Q ss_pred             HHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          475 AAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       475 A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      |+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus       226 A~~~G~~~vdG~~Ml~~Qa~~~f~~w~g~~~~~~~~~~~~~~  267 (270)
T TIGR00507       226 AKSLGTKTIDGLGMLVAQAALAFELWTGVEPDIEKMFEQLIA  267 (270)
T ss_pred             HHHCCCeeeCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999998865

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=1.3e-51  Score=407.06  Aligned_cols=227  Identities=19%  Similarity=0.327  Sum_probs=204.7

Q ss_pred             cccCCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcH----HHHHHHhcC-CCCcEEEEeecCCCCCCC
Q 010101            4 AAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHI----SEVDKLIQH-PTLPAIVSYRLKSSRKSS   77 (518)
Q Consensus         4 ~~~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~----~~l~~l~~~-~~~PiI~T~R~~~eGG~~   77 (518)
                      ...+.|+||+||.+++.+|++.+++.+...++|+||||+|+|. .+..    +.+..+++. .++|+|||+|+++|||.|
T Consensus        11 ~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~   90 (253)
T PRK02412         11 IGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEI   90 (253)
T ss_pred             eCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCC
Confidence            3567899999999999999999998877789999999999997 3321    234455543 368999999999999999


Q ss_pred             CCCcHHHHHHHHHHHhhcC-CcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCE
Q 010101           78 DEACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADV  155 (518)
Q Consensus        78 ~~~~~~~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadi  155 (518)
                      +.+ +++|+++++.+++.| +||||||++.+.+.++++.. .|+.++++|+||||| ++||+.+++.+++++|.++||||
T Consensus        91 ~~~-~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f-~~tP~~~~l~~~~~~~~~~gaDi  168 (253)
T PRK02412         91 ALS-DEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDF-EKTPPKEEIVERLRKMESLGADI  168 (253)
T ss_pred             CCC-HHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCC-CCCcCHHHHHHHHHHHHHhCCCE
Confidence            999 999999999999999 99999999998888888876 466899999999999 99999999999999999999999


Q ss_pred             EEEEcccCCcccHHHHHHHhcc-----CCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhh
Q 010101          156 MKLEIAVDSITDLAPVFEMLTH-----CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQL  230 (518)
Q Consensus       156 vKia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~  230 (518)
                      +|+|+||++..|+++++++..+     .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++++++++.
T Consensus       169 vKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~sAPGQ~~~~el~~i~~~  248 (253)
T PRK02412        169 VKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVEDLRRILEI  248 (253)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999998743     46899999999999999999999999999999999999999999999999886


Q ss_pred             cc
Q 010101          231 EH  232 (518)
Q Consensus       231 ~~  232 (518)
                      .+
T Consensus       249 l~  250 (253)
T PRK02412        249 LH  250 (253)
T ss_pred             hc
Confidence            54

>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-51  Score=391.01  Aligned_cols=221  Identities=23%  Similarity=0.390  Sum_probs=200.4

Q ss_pred             CceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-C-CcHHHHHHHhcC-CCCcEEEEeecCCCCCCCCCCcHHH
Q 010101            8 SLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-F-SHISEVDKLIQH-PTLPAIVSYRLKSSRKSSDEACKNT   84 (518)
Q Consensus         8 ~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~-~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~   84 (518)
                      +|+||+++.+.+..++.+++++++..++|++|||+|+|. . +..+....+++. ...|+|||+|+.+|||.|+++ +++
T Consensus         1 ~~~i~~~v~~~~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~-~~~   79 (231)
T COG0710           1 MPKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGS-EEE   79 (231)
T ss_pred             CCEEEEEeecCCHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhcCCCCCC-HHH
Confidence            489999999999999999999999999999999999998 2 333445556653 467999999999999999999 999


Q ss_pred             HHHHHHHHhhcC-CcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccC
Q 010101           85 CLQVLRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVD  163 (518)
Q Consensus        85 ~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~  163 (518)
                      |++++..+++.+ ++|||||+..+.+.++++...+ ...++|+||||| ++||+++++.+++.+|...|+||+|+|+||+
T Consensus        80 ~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~-~~~~vI~SyH~F-~~TP~~~~i~~~l~km~~~~aDivKiAvm~~  157 (231)
T COG0710          80 YIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFA-KKHGVIVSYHDF-EKTPPLEEIIERLDKMESLGADIVKIAVMPQ  157 (231)
T ss_pred             HHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhcc-ccCCEEEEeccC-CCCCcHHHHHHHHHHHHhhCCCeEEEEecCC
Confidence            999999999976 9999999999988777777632 233499999999 9999999999999999999999999999999


Q ss_pred             CcccHHHHHHHhcc---CCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhc
Q 010101          164 SITDLAPVFEMLTH---CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLE  231 (518)
Q Consensus       164 ~~~D~~~l~~~~~~---~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~  231 (518)
                      +.+|++++++++..   ..+|+|+||||..|++||+++++|||++||+++++++||||++++++++++...
T Consensus       158 ~~~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~sAPGQi~v~~l~~~~~~l  228 (231)
T COG0710         158 SKEDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKPSAPGQISVDELRKILTLL  228 (231)
T ss_pred             CHHHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCCCCCCCCCHHHHHHHHHHh
Confidence            99999999999875   689999999999999999999999999999999999999999999999987654

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I

Probab=100.00  E-value=1.5e-50  Score=394.66  Aligned_cols=214  Identities=29%  Similarity=0.446  Sum_probs=192.6

Q ss_pred             eEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcH-------HHHHHHhcCCCCcEEEEeecCCCCCCCCCCc
Q 010101           10 LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHI-------SEVDKLIQHPTLPAIVSYRLKSSRKSSDEAC   81 (518)
Q Consensus        10 ~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~-------~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~   81 (518)
                      +||+||++++.+++..+++.+ ..|||+||||+|+|. .+..       +++..++  .++|+|||+|+++|||.++.+ 
T Consensus         1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~--~~~piI~T~R~~~eGG~~~~~-   76 (228)
T TIGR01093         1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLR--PDKPLIFTIRTISEGGKFPGN-   76 (228)
T ss_pred             CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhc--CCCcEEEEECChhhCCCCCCC-
Confidence            589999999999999999886 789999999999997 3221       2233333  579999999999999999999 


Q ss_pred             HHHHHHHHHHH-hhcCCcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEE
Q 010101           82 KNTCLQVLRRA-LDLDVEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLE  159 (518)
Q Consensus        82 ~~~~~~ll~~~-~~~g~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia  159 (518)
                      +++|++++..+ .+.++||||||++.+.+..+++.. ++++++|+|+||||| ++||+.+++.+++++|.++||||+|+|
T Consensus        77 ~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f-~~tp~~~~l~~~~~~~~~~gaDivKia  155 (228)
T TIGR01093        77 EEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDF-QKTPSWEEIVERLEKALSYGADIVKIA  155 (228)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCC-CCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence            99999999998 577799999999999888887765 567899999999999 999999999999999999999999999


Q ss_pred             cccCCcccHHHHHHHhccC----CCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHh
Q 010101          160 IAVDSITDLAPVFEMLTHC----QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVY  228 (518)
Q Consensus       160 ~~~~~~~D~~~l~~~~~~~----~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~  228 (518)
                      +||++.+|+++|++++.+.    ++|+|+|+||+.|++||+++++|||++||+++++++||||+++++++++|
T Consensus       156 ~~a~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~  228 (228)
T TIGR01093       156 VMANSKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLRELL  228 (228)
T ss_pred             eccCCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCCCCCCCCcCHHHHHhhC
Confidence            9999999999999997543    57999999999999999999999999999999999999999999999864

Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=100.00  E-value=1.5e-50  Score=394.03  Aligned_cols=216  Identities=31%  Similarity=0.499  Sum_probs=185.4

Q ss_pred             EEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CC---cHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHHHH
Q 010101           12 CTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FS---HISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQ   87 (518)
Q Consensus        12 cv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~---~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~   87 (518)
                      ||||+++|.++++.+++++...|+|+||||+|+|. .+   ..+++..+++..++|+|||+|+++|||.+..+ +++|++
T Consensus         1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~-~~~~~~   79 (224)
T PF01487_consen    1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGS-EEEYLE   79 (224)
T ss_dssp             EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS--HHHHHH
T ss_pred             CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCC-HHHHHH
Confidence            99999999999999999976669999999999998 22   34678888887899999999999999999999 999999


Q ss_pred             HHHHHhhcCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccCCccc
Q 010101           88 VLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITD  167 (518)
Q Consensus        88 ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D  167 (518)
                      +++.+++.|++|||||++..++........+.++++||+||||| ++||+++++.+++++|.++||||+|+|+++++.+|
T Consensus        80 ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f-~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D  158 (224)
T PF01487_consen   80 LLERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDF-EKTPSWEELIELLEEMQELGADIVKIAVMANSPED  158 (224)
T ss_dssp             HHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEES-S---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHH
T ss_pred             HHHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccC-CCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHH
Confidence            99999999999999999966554433333456899999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHhccC----CCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhh
Q 010101          168 LAPVFEMLTHC----QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQ  229 (518)
Q Consensus       168 ~~~l~~~~~~~----~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~  229 (518)
                      +++|++++.+.    +.|+|+|+||+.|++||++++.|||++||+..++++||||+++++++++|+
T Consensus       159 ~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~sApGQl~~~~l~~~~~  224 (224)
T PF01487_consen  159 VLRLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGEASAPGQLTLEELREILH  224 (224)
T ss_dssp             HHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS-SSTT-EBHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCCCCCCCCcHHHHHHHhC
Confidence            99999997653    589999999999999999999999999999888899999999999999875

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase

Probab=100.00  E-value=1.3e-48  Score=380.64  Aligned_cols=214  Identities=32%  Similarity=0.453  Sum_probs=193.4

Q ss_pred             eEEEeecCC-CHHHHHHHHHHHHhhCCCEEEEEeccCC-C---CcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHH
Q 010101           10 LVCTQLECE-TTEEMQASIEQAKVEGADLVELCIDSME-F---SHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNT   84 (518)
Q Consensus        10 ~icv~l~~~-~~~~~~~~~~~~~~~g~D~vElRlD~l~-~---~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   84 (518)
                      +||+||.++ +.++.+..++..  .|+|+||||+|+|. .   +..+++..+++..+.|+|||+|+++|||.++.+ +++
T Consensus         1 ~i~~~i~~~~~~~e~~~~~~~~--~~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~-~~~   77 (225)
T cd00502           1 KICVPLTGPDLLEEALSLLELL--LGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGS-EEE   77 (225)
T ss_pred             CEEEEecCCCCHHHHHHHHHHh--cCCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCC-HHH
Confidence            589999999 999988877653  29999999999998 3   234578888877779999999999999999999 999


Q ss_pred             HHHHHHHHhhcCCcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccC
Q 010101           85 CLQVLRRALDLDVEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVD  163 (518)
Q Consensus        85 ~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~  163 (518)
                      |+++++.++++|++|||||++.  +.++++.. .+++++|+|+|||+| ++||+.+++.+++++|..+||||+|+|++|+
T Consensus        78 ~~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~~~~kiI~S~H~f-~~tp~~~~l~~~~~~~~~~gadivKla~~~~  154 (225)
T cd00502          78 YLELLEEALKLGPDYVDIELDS--ALLEELINSRKKGNTKIIGSYHDF-SGTPSDEELVSRLEKMAALGADIVKIAVMAN  154 (225)
T ss_pred             HHHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHhCCCEEEEEeccC-CCCcCHHHHHHHHHHHHHhCCCEEEEEecCC
Confidence            9999999999999999999988  44555554 456899999999999 9999999999999999999999999999999


Q ss_pred             CcccHHHHHHHhccC----CCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhh
Q 010101          164 SITDLAPVFEMLTHC----QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQ  229 (518)
Q Consensus       164 ~~~D~~~l~~~~~~~----~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~  229 (518)
                      +.+|++++++++.+.    ++|+|+|+||+.|++||++++.|||++||+++++++||||+++++++++|.
T Consensus       155 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~~  224 (225)
T cd00502         155 SIEDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEPSAPGQLSVEELKQALS  224 (225)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCCCCCCCCcCHHHHHHHHh
Confidence            999999999997654    469999999999999999999999999999999999999999999998875

) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.

>PRK13575 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=1.3e-48  Score=380.61  Aligned_cols=219  Identities=20%  Similarity=0.351  Sum_probs=184.0

Q ss_pred             ceEEEeecCCC-HHHH-HHHHHHHHhhCCCEEEEEeccCC-CCcH---HHHHHHhc-CCCCcEEEEeecCCCCCCCCCCc
Q 010101            9 LLVCTQLECET-TEEM-QASIEQAKVEGADLVELCIDSME-FSHI---SEVDKLIQ-HPTLPAIVSYRLKSSRKSSDEAC   81 (518)
Q Consensus         9 ~~icv~l~~~~-~~~~-~~~~~~~~~~g~D~vElRlD~l~-~~~~---~~l~~l~~-~~~~PiI~T~R~~~eGG~~~~~~   81 (518)
                      +.|++++.... ..+. ..+++.+ ..+||+||||+|+|. .+..   +.+..+++ ..+.|+|||+|+++|||.++++ 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~~~~~~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~~-   81 (238)
T PRK13575          4 VEVAATIAPQLSIEETLIQKINHR-IDAIDIIELRIDQWENVTVDQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQFT-   81 (238)
T ss_pred             eeEeeeeccccccchhHHHHHHhc-CCCCCEEEEEeccccCCCHHHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCCC-
Confidence            34556666553 5554 4444443 478999999999998 4432   23344444 2579999999999999999999 


Q ss_pred             HHHHHHHHHHHhhcC-CcEEEEecCC--CCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEE
Q 010101           82 KNTCLQVLRRALDLD-VEFVEMDYEV--ASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMK  157 (518)
Q Consensus        82 ~~~~~~ll~~~~~~g-~~yvDiEl~~--~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivK  157 (518)
                      +++|+++++.++..+ +||||||++.  ..+..+++.. .++.++++|+||||| ++||+.+++.+++++|.++||||+|
T Consensus        82 ~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F-~~TP~~~~l~~~~~~m~~~gaDi~K  160 (238)
T PRK13575         82 NDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNF-ESTPPLDELKFIFFKMQKFNPEYVK  160 (238)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            999999998888765 8999999986  3445556654 566899999999999 9999999999999999999999999


Q ss_pred             EEcccCCcccHHHHHHHhcc----CCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhh
Q 010101          158 LEIAVDSITDLAPVFEMLTH----CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQL  230 (518)
Q Consensus       158 ia~~~~~~~D~~~l~~~~~~----~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~  230 (518)
                      ||+||++.+|+++|++++.+    .+.|+|+|+||+.|++||+++++|||++||+++++++||||++++++++++.+
T Consensus       161 iAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~sAPGQi~v~~l~~i~~~  237 (238)
T PRK13575        161 LAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEPQAPGQIHVTDLKAQVTL  237 (238)
T ss_pred             EEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCCCCCCCCCHHHHHHHHHh
Confidence            99999999999999998654    35799999999999999999999999999999999999999999999998764

>PRK13576 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=9.9e-47  Score=360.63  Aligned_cols=203  Identities=16%  Similarity=0.159  Sum_probs=172.4

Q ss_pred             CCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHH
Q 010101            7 NSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTC   85 (518)
Q Consensus         7 ~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   85 (518)
                      +.|+||+||++++.++++.+.+.   .|+|+||||+|+|. .+..  +..+++....|+|||+|+++|||.++++ +++|
T Consensus         1 ~~p~i~vpi~~~~~e~i~~~~~~---~~aD~vE~RlD~l~~~~~~--~~~~l~~~~~plI~T~R~~~EGG~~~~~-~~~r   74 (216)
T PRK13576          1 MRPLIVASLPIKKIEDLKLIGNF---LDADLIELRLDYLKDREVS--VIEFLDKYKDKLIVTLRDKAEGGINELD-DELK   74 (216)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhc---CCCCEEEEEeccccccchh--HHHHHHhcCCCEEEEeCChHHCCCCcCC-HHHH
Confidence            46899999999999999887533   58999999999998 3322  2223333457999999999999999999 9999


Q ss_pred             HHHHHHHhhcCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccCCc
Q 010101           86 LQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSI  165 (518)
Q Consensus        86 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~  165 (518)
                      +++++.+++.+. ++|||++...+..       ..+.++|+||||| ++||+.++|.+++++|.+ ||||+|+|+||++.
T Consensus        75 ~~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF-~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~  144 (216)
T PRK13576         75 ISLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYF-DYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKG  144 (216)
T ss_pred             HHHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCC-CCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCc
Confidence            999999999985 7799998544321       1246799999999 999999999999999987 99999999999986


Q ss_pred             -ccHH-HHHHHhccCCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhc
Q 010101          166 -TDLA-PVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLE  231 (518)
Q Consensus       166 -~D~~-~l~~~~~~~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~  231 (518)
                       .|++ +|+.   ..  .+++|+||+.| +||+++++|||++||+++++++||||+++++++++|+..
T Consensus       145 ~~d~l~~Ll~---~~--~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~sAPGQi~v~~l~~i~~~l  206 (216)
T PRK13576        145 YKEVLLPLLE---YE--NVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEPTAQGQLHYKKVKQILNYL  206 (216)
T ss_pred             hHhHHHHHhc---cc--CccEEEcCCcc-HHHHHHHHhCCeeEEEecCCCCCCCCccHHHHHHHHHHH
Confidence             7665 6654   22  45889999999 999999999999999999999999999999999999865

>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=2.2e-42  Score=333.84  Aligned_cols=203  Identities=14%  Similarity=0.222  Sum_probs=169.6

Q ss_pred             ccCCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcH--HHHHHHhcCCCCcEEEEeecCCCCCCCCCCc
Q 010101            5 AKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHI--SEVDKLIQHPTLPAIVSYRLKSSRKSSDEAC   81 (518)
Q Consensus         5 ~~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~--~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~   81 (518)
                      -.+.|+||+||++++.+|++.+++.+...|||+||||+|+|. ++..  ..+....+..++|+|||+|+.        + 
T Consensus        17 g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~~~~p~I~T~R~~--------~-   87 (229)
T PRK01261         17 GNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEMDIDYIFTYRGV--------D-   87 (229)
T ss_pred             CCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhhcCCCEEEEEcCC--------C-
Confidence            346799999999999999999998877789999999999997 4432  122222333489999999942        2 


Q ss_pred             HHHHHHHHHHHhhcCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcc
Q 010101           82 KNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIA  161 (518)
Q Consensus        82 ~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~  161 (518)
                      +   .++++.+++.++||||||++...++     ..+..++|+|+|||     ||+.+++.+++++|.++||||+|+|+|
T Consensus        88 ~---~~~l~~a~~~~~d~vDIEl~~~~~~-----~~~~~~~kvIvS~H-----tp~~eeL~~~l~~m~~~gaDI~KiAvm  154 (229)
T PRK01261         88 A---RKYYETAIDKMPPAVDLDINLIGKL-----EFRPRNTMLMVSYH-----TNNSDNMPAILDIMNEKNPDYVKVACN  154 (229)
T ss_pred             H---HHHHHHHHhhCCCEEEEEcccchhh-----hhhcCCCeEEEEeC-----CCCHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            3   3678888887799999999874332     23457999999999     458899999999999999999999999


Q ss_pred             cCCcccHHHHHHH----hccCCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhc
Q 010101          162 VDSITDLAPVFEM----LTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLE  231 (518)
Q Consensus       162 ~~~~~D~~~l~~~----~~~~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~  231 (518)
                      |++.+|++.++..    ..+.+.|+|+|+||+  ++||+++++|||++||+++++++||||+++++++++++..
T Consensus       155 p~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~sAPGQi~v~~l~~~~~~~  226 (229)
T PRK01261        155 YNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNETAPGQPKRDYYESAFIKY  226 (229)
T ss_pred             CCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCCCCCCCCCHHHHHHHHHHh
Confidence            9999998776643    344578999999999  9999999999999999999999999999999999998753

>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]

Probab=100.00  E-value=3.2e-39  Score=327.28  Aligned_cols=435  Identities=14%  Similarity=0.057  Sum_probs=355.8

Q ss_pred             CCCcEEEEeecCCCCCC---CCCCcHHHHHHHHHHHhhcCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCC
Q 010101           60 PTLPAIVSYRLKSSRKS---SDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKP  136 (518)
Q Consensus        60 ~~~PiI~T~R~~~eGG~---~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp  136 (518)
                      +.+|.+++.|..||||.   .++. +.++..-+...++++.+|+|.+++...++...+.....+..++|.+.|++ +.+|
T Consensus       148 sal~~L~~~~~~we~~~~~vveG~-gg~~~~~~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrm-q~rP  225 (595)
T KOG0692|consen  148 SALKTLGLNVETWEENNRAVVEGC-GGEFSIDSKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRM-QERP  225 (595)
T ss_pred             hhHHHhccccceecCCCEEEEEcC-CCeeeechhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCccc-ccCC
Confidence            57899999999999998   6766 66666667777899999999999988777766654444555999999999 9999


Q ss_pred             ChhHHHHHHHHHHHcCCCEEEEEcccCCcccHHHHHHHhccCCCCEEEEecCCccchhhhcCCCCCCcccccccCCC--C
Q 010101          137 TTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGK--S  214 (518)
Q Consensus       137 ~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~--s  214 (518)
                          +-.+...+++.||||.|++.+...+-|+. ....++..++|+++.-||+.+..+|+++|+++.++|+..++..  +
T Consensus       226 ----i~~LV~~l~q~GadI~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS  300 (595)
T KOG0692|consen  226 ----IGDLVVGLKQLGADIECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLIS  300 (595)
T ss_pred             ----chHHHHHHHhcCCceEEeccCCCCceeee-ccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCcccc
Confidence                77788888999999999999999999997 5556677789999999999999999999999999999999854  9


Q ss_pred             CCCCCCHHHHHHHh--hhccCCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEecccCcHHHHHHHhcCCCCCEE
Q 010101          215 VPGLPTLVSLKQVY--QLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGF  292 (518)
Q Consensus       215 ApGQ~~~~~l~~~~--~~~~~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~  292 (518)
                      +|+|...-.|.+.|  ++.+..+.+++|++.|.|.+|+.+|.+||.+|.+.-.++.|...-++..-.++......++.||
T Consensus       301 ~pyv~mt~~lme~fgvn~~~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~F  380 (595)
T KOG0692|consen  301 VPYVEMTLKLMERFGVNVEHSTSWDRFYVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKF  380 (595)
T ss_pred             ccchhHHHHHHHHhCcCeEecCCCcceEeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccch
Confidence            99999999999999  8899999999999999999999999999999999999999887766655555554445688999


Q ss_pred             E-ecccchHHHHhcccccChhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEE
Q 010101          293 S-VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFV  371 (518)
Q Consensus       293 ~-VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vl  371 (518)
                      + |+.|||.++...+|++++.+.-+||+|++.++..|+...++|||..|-+.++...++..+++-+.+......-.+...
T Consensus       381 a~vl~pmgc~v~qt~~svtv~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svvA~~~~~~s~gdptti~~~as~rvket~r  460 (595)
T KOG0692|consen  381 AEVLEPMGCKVSQTENSVTVTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVVALFAGLRSSGDPTTIRDVASWRVKETER  460 (595)
T ss_pred             HhhhccccceeeeecccccccCCCCCcccceehhhhcccccccchhHhHhHHHHhhcccCCCCCcccccccchhHHHHHH
Confidence            9 999999999999999999999999999998775578999999999999999876554322200000000112235678


Q ss_pred             EEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChh
Q 010101          372 LVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKE  451 (518)
Q Consensus       372 vlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~  451 (518)
                      |+|.|+..++..+...+.+..++|.+|+ +|+-++++..+.  .+++|  ......+.++-++++.+  +.+.+.+....
T Consensus       461 ~ia~~~el~klg~~~~E~~dg~~v~~~~-~k~lk~ae~~g~--~TydD--hr~am~fsvLA~~~~~~--~~i~d~~ct~k  533 (595)
T KOG0692|consen  461 MIAICTELRKLGATVEEGSDGYCVITPP-EKKLKLAEIDGS--LTYDD--HRMAMAFSVLAACADVP--ITINDPGCTRK  533 (595)
T ss_pred             HHHHHHHHHHhcccccccCceEEEeCCc-hHhccchhhccc--ccccc--ccchhhhhHHHhccCCC--ccccCCCcccc
Confidence            9999999999999888888789999999 888888876531  12222  22345667778888766  55555556666


Q ss_pred             hhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 010101          452 ALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRK  512 (518)
Q Consensus       452 ~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~  512 (518)
                      .++....|+|-+|.|+-|.+  ++.+.|....  .+|++-|+.+||+.++|+++|.++-.+
T Consensus       534 t~p~y~~Vl~~~~~~kltga--eple~~a~kn--ssm~vigmr~agkttigk~~akeL~~k  590 (595)
T KOG0692|consen  534 TFPDYFQVLERITKHKLTGA--EPLESGAIKN--SSMFVIGMREAGKTTIGKPAAKELYWK  590 (595)
T ss_pred             ccchHHHHHHHHhhcccccc--Chhhcccccc--ceeeeehhhhcCceecCccchHHhCee
Confidence            66666779999999999977  7888887655  999999999999999999999887554

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=99.95  E-value=2.9e-28  Score=199.72  Aligned_cols=81  Identities=41%  Similarity=0.836  Sum_probs=75.1

Q ss_pred             EecCCCCcccCHHHHHHHHHHcCCCceEEecccC--cHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhhhcCce
Q 010101          242 LVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAV  319 (518)
Q Consensus       242 liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGav  319 (518)
                      |||+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++..+|.|+|||||||+++++|+|++|+.|+.+|||
T Consensus         1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv   80 (83)
T PF08501_consen    1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV   80 (83)
T ss_dssp             EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred             CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence            7999999999999999999999999999999996  99999999988999999999999999999999999999999999


Q ss_pred             eEE
Q 010101          320 NTI  322 (518)
Q Consensus       320 NTi  322 (518)
                      |||
T Consensus        81 Ntv   83 (83)
T PF08501_consen   81 NTV   83 (83)
T ss_dssp             SEE
T ss_pred             ccC
Confidence            997

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.91  E-value=7.8e-24  Score=211.60  Aligned_cols=214  Identities=23%  Similarity=0.340  Sum_probs=165.8

Q ss_pred             EEEecCCCCcccCHHHHHHHHHHcCCCceEEec--cc--CcHHHHHHHhcC-CCCCEEEecccchHHHHh--cccccChh
Q 010101          240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPM--LV--DDVKEFFRTYSG-TDFAGFSVGIPHKEPAVA--CCDEVHPL  312 (518)
Q Consensus       240 ~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~--~~--~~l~~~~~~l~~-~~~~G~~VT~P~K~~v~~--~~d~~~~~  312 (518)
                      .-++|+.-+--.--.+|+++|+++|++..|.++  ++  +++.+.++.++. .++.|++||+|||+.+.+  ++|++ +.
T Consensus        38 ~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~  116 (283)
T PRK14192         38 TILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SL  116 (283)
T ss_pred             EEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CH
Confidence            345564433333446999999999999999999  55  368888888854 489999999999999999  99999 99


Q ss_pred             hhhcCceeEEEEeccCCe------EEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHH
Q 010101          313 AKSIGAVNTIIRRPIDGK------LVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFG  385 (518)
Q Consensus       313 A~~iGavNTi~~~~~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~  385 (518)
                      ++.++++||+ +   .|+      ++|+||| .||++.|+..     +        .+++||+++|+|+|| +||++++.
T Consensus       117 aKDVdg~n~~-n---~G~l~~~~~~~~p~T~-~gii~~L~~~-----~--------i~l~Gk~vvViG~gg~vGkpia~~  178 (283)
T PRK14192        117 AKDVDGVTCL-G---FGRMAMGEAAYGSATP-AGIMRLLKAY-----N--------IELAGKHAVVVGRSAILGKPMAMM  178 (283)
T ss_pred             HHhcCCCCcc-c---cCccccCCCcccCCcH-HHHHHHHHHc-----C--------CCCCCCEEEEECCcHHHHHHHHHH
Confidence            9999999999 3   466      8999999 9999998751     2        578999999999999 99999999


Q ss_pred             HHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeC
Q 010101          386 AKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYT  465 (518)
Q Consensus       386 L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~  465 (518)
                      |.+.|+.|++++|   +++.|++.+               .++|+|||||+   .|.    +++.++++++.+|+|+.|+
T Consensus       179 L~~~gatVtv~~~---~t~~L~~~~---------------~~aDIvI~AtG---~~~----~v~~~~lk~gavViDvg~n  233 (283)
T PRK14192        179 LLNANATVTICHS---RTQNLPELV---------------KQADIIVGAVG---KPE----LIKKDWIKQGAVVVDAGFH  233 (283)
T ss_pred             HHhCCCEEEEEeC---CchhHHHHh---------------ccCCEEEEccC---CCC----cCCHHHcCCCCEEEEEEEe
Confidence            9999999999999   344444432               46899999994   232    5788899999999999999


Q ss_pred             CC------chHHHHHHHHC-C-Ce-eeccH-----HHHHHHHHHHHH
Q 010101          466 PR------NTRLLREAAEV-G-AT-VVSGV-----EMFIRQALGQFR  498 (518)
Q Consensus       466 P~------~T~ll~~A~~~-G-~~-~i~G~-----~ml~~Qa~~qf~  498 (518)
                      |.      +-.+ +.+++. . +. +=.|.     -||+...+.+++
T Consensus       234 ~~~~~~~GDvd~-~~~~~~a~~itPvPGGVGp~T~a~L~~n~~~~~~  279 (283)
T PRK14192        234 PRDGGGVGDIEL-QGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAE  279 (283)
T ss_pred             ecCCCCcccccH-HHhhccceEeCCCCCcChHHHHHHHHHHHHHHHH
Confidence            94      2322 223322 2 22 22343     477777766654

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.91  E-value=4.8e-23  Score=188.62  Aligned_cols=152  Identities=39%  Similarity=0.667  Sum_probs=126.5

Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc
Q 010101          336 TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA  414 (518)
Q Consensus       336 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~  414 (518)
                      |||.||.+++++.     +        .++++++++|+|+|++|++++.+|.+.|. +|++++|+.++++++++.++...
T Consensus         1 td~~g~~~a~~~~-----~--------~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~   67 (155)
T cd01065           1 TDGLGFVRALEEA-----G--------IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG   67 (155)
T ss_pred             CCHHHHHHHHHhh-----C--------CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc
Confidence            8999999998752     1        34678999999999999999999999875 99999999999999998876431


Q ss_pred             --cccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHH
Q 010101          415 --LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQ  492 (518)
Q Consensus       415 --~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Q  492 (518)
                        ....+..+ ...++|+||++||.+..+ ....++....++++.+++|++|.|..|++.+++++.|+.+++|++||++|
T Consensus        68 ~~~~~~~~~~-~~~~~Dvvi~~~~~~~~~-~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~~~~~q  145 (155)
T cd01065          68 IAIAYLDLEE-LLAEADLIINTTPVGMKP-GDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEMLVYQ  145 (155)
T ss_pred             cceeecchhh-ccccCCEEEeCcCCCCCC-CCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHHHHHHH
Confidence              12233333 356799999999998752 23344555567888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 010101          493 ALGQFRLFTG  502 (518)
Q Consensus       493 a~~qf~lw~g  502 (518)
                      +..||++|||
T Consensus       146 ~~~~~~~~~~  155 (155)
T cd01065         146 AAEAFELWTG  155 (155)
T ss_pred             HHHHHHHhcC
Confidence            9999999997

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=99.64  E-value=4.3e-16  Score=139.71  Aligned_cols=97  Identities=40%  Similarity=0.570  Sum_probs=78.7

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCc---ccccccccccCCCCccEEEEcCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGE---ALHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~---~~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      ++++++++|+||||+||+++++|...|+ +|+|+|||.+|+++|++.++..   ..+++++.+ ...++|+||||||.||
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~-~~~~~DivI~aT~~~~   87 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEE-ALQEADIVINATPSGM   87 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCH-HHHTESEEEE-SSTTS
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHH-HHhhCCeEEEecCCCC
Confidence            6789999999999999999999999999 7999999999999999999543   456776654 4567999999999998


Q ss_pred             CCCCCCCCCChhhhcCC----CEEEEEeeCCCc
Q 010101          440 EPNSDQSPVPKEALKAY----ELVFDAVYTPRN  468 (518)
Q Consensus       440 ~~~~~~~~~~~~~l~~~----~~v~Di~Y~P~~  468 (518)
                      .      ++..+.+...    .+++|+.+ |+.
T Consensus        88 ~------~i~~~~~~~~~~~~~~v~Dla~-Pr~  113 (135)
T PF01488_consen   88 P------IITEEMLKKASKKLRLVIDLAV-PRD  113 (135)
T ss_dssp             T------SSTHHHHTTTCHHCSEEEES-S-S-S
T ss_pred             c------ccCHHHHHHHHhhhhceecccc-CCC
Confidence            6      3566666554    59999986 543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=99.60  E-value=2e-15  Score=146.94  Aligned_cols=126  Identities=24%  Similarity=0.242  Sum_probs=96.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCC---eEEEEeCC----HHHH-------HHHHHHhcCcccccccccccCCCCc
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGA---RVIIFNRN----YERA-------KALADAVSGEALHFEYLHEFFPEKG  428 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~---~v~i~nRt----~~ka-------~~la~~~~~~~~~~~~l~~~~~~~~  428 (518)
                      .++++++++|+|||++|+++++.|.+.|+   +|+|+||+    .+++       +++++.++...... ++.+ .+.++
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~-~l~~-~l~~~   98 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGG-TLKE-ALKGA   98 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccC-CHHH-HHhcC
Confidence            46789999999999999999999999997   59999999    5654       55666654221111 2322 34568


Q ss_pred             cEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCe-eeccHHHHHHHHHHH
Q 010101          429 MILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGAT-VVSGVEMFIRQALGQ  496 (518)
Q Consensus       429 divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~-~i~G~~ml~~Qa~~q  496 (518)
                      |+|||+||.||.+.     .....+.+..++||++ +|..|+++++|++.|++ +.+|..|+++|+-..
T Consensus        99 dvlIgaT~~G~~~~-----~~l~~m~~~~ivf~ls-nP~~e~~~~~A~~~ga~i~a~G~~~~~~Q~nn~  161 (226)
T cd05311          99 DVFIGVSRPGVVKK-----EMIKKMAKDPIVFALA-NPVPEIWPEEAKEAGADIVATGRSDFPNQVNNV  161 (226)
T ss_pred             CEEEeCCCCCCCCH-----HHHHhhCCCCEEEEeC-CCCCcCCHHHHHHcCCcEEEeCCCCCcccccee
Confidence            99999999887541     1122344778999866 99999999999999996 999999999997543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=99.50  E-value=1.5e-13  Score=130.84  Aligned_cols=165  Identities=25%  Similarity=0.252  Sum_probs=121.6

Q ss_pred             EeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          333 GYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       333 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      |-||-....+..+++.+... |        .++++++++|+|+ |++|++++..|.+.|++|++++|+.++++++++.+.
T Consensus         3 G~~~ta~aav~~~~~~l~~~-~--------~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~   73 (194)
T cd01078           3 GSNTTAAAAVAAAGKALELM-G--------KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLR   73 (194)
T ss_pred             CcHHHHHHHHHHHHHHHHHh-C--------cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence            45666666677776656432 2        4678899999996 999999999999999999999999999999988764


Q ss_pred             C----cc--c---ccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHC----
Q 010101          412 G----EA--L---HFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEV----  478 (518)
Q Consensus       412 ~----~~--~---~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~----  478 (518)
                      .    ..  .   +.+++.+ ...++|+||+|||.|+...    ........+..+++|++|.|..++...+++..    
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~-~~~~~diVi~at~~g~~~~----~~~~~~~~~~~vv~D~~~~~~~~~~~~~~~~~~~~~  148 (194)
T cd01078          74 ARFGEGVGAVETSDDAARAA-AIKGADVVFAAGAAGVELL----EKLAWAPKPLAVAADVNAVPPVGIEGIDVPDKGVDR  148 (194)
T ss_pred             hhcCCcEEEeeCCCHHHHHH-HHhcCCEEEECCCCCceec----hhhhcccCceeEEEEccCCCCCCcccccccCCceec
Confidence            1    11  1   1122222 3467899999999998511    11112234467999999999999888887776    


Q ss_pred             ------CCeeeccHHHHHHHHHHHHHHhc--CCCCCHHHHHH
Q 010101          479 ------GATVVSGVEMFIRQALGQFRLFT--GGLAPEDFMRK  512 (518)
Q Consensus       479 ------G~~~i~G~~ml~~Qa~~qf~lw~--g~~~p~~~~~~  512 (518)
                            |.....|+.|.++|+... |.|.  ++..+.+.+.+
T Consensus       149 ~g~~~~g~~~~~g~~~~~~~~~~a-e~~~~~~~~~~~~~~~~  189 (194)
T cd01078         149 EGKVPYGAIGVGGLKMKTHRACIA-KLFESNPLVLDAEEIYD  189 (194)
T ss_pred             CCCeEEEeeccchhHHHHHHHHHH-HHhhcCCeeechHHHHH
Confidence                  666779999999999877 8888  56666665554

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.40  E-value=4.3e-13  Score=135.17  Aligned_cols=120  Identities=18%  Similarity=0.197  Sum_probs=95.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+++++++|+|+|++|++++..|...|++|+++||+.++.+.+. ..+.....++++.+ ...++|+|||++|.++.+.
T Consensus       147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-~~g~~~~~~~~l~~-~l~~aDiVint~P~~ii~~  224 (287)
T TIGR02853       147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-EMGLIPFPLNKLEE-KVAEIDIVINTIPALVLTA  224 (287)
T ss_pred             CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeeecHHHHHH-HhccCCEEEECCChHHhCH
Confidence            468899999999999999999999999999999999988765543 34444445555554 4568999999999875321


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeee--ccHHHHH
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVV--SGVEMFI  490 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i--~G~~ml~  490 (518)
                         .  ..+.++++.+++|+.|+|..|+| +.|++.|++++  +|+.+.+
T Consensus       225 ---~--~l~~~k~~aliIDlas~Pg~tdf-~~Ak~~G~~a~~~~glPg~~  268 (287)
T TIGR02853       225 ---D--VLSKLPKHAVIIDLASKPGGTDF-EYAKKRGIKALLAPGLPGIV  268 (287)
T ss_pred             ---H--HHhcCCCCeEEEEeCcCCCCCCH-HHHHHCCCEEEEeCCCCccc
Confidence               1  11345778999999999999999 99999999987  8877554

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=99.32  E-value=1.2e-11  Score=127.42  Aligned_cols=151  Identities=18%  Similarity=0.169  Sum_probs=105.5

Q ss_pred             hhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHH-CCC-
Q 010101          314 KSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKS-RGA-  391 (518)
Q Consensus       314 ~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~-~G~-  391 (518)
                      ..+|++||++.+  ++.|.|+|||+.|++.+..  +.             ....++++|+|+|++|++.+.++.. .++ 
T Consensus        96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-------------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~  158 (330)
T PRK08291         96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDASRAAVIGAGEQARLQLEALTLVRPIR  158 (330)
T ss_pred             CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCCEEEEECCCHHHHHHHHHHHhcCCCC
Confidence            467999999766  7889999999999999863  21             1235789999999999999999985 577 


Q ss_pred             eEEEEeCCHHHHHHHHHHhcC----cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEE-eeCC
Q 010101          392 RVIIFNRNYERAKALADAVSG----EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDA-VYTP  466 (518)
Q Consensus       392 ~v~i~nRt~~ka~~la~~~~~----~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di-~Y~P  466 (518)
                      +|+|+||+.++++++++++..    ....++++.+ ...++|+||+|||.. .|     .+..++++++..+..+ .+.|
T Consensus       159 ~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~-al~~aDiVi~aT~s~-~p-----~i~~~~l~~g~~v~~vg~d~~  231 (330)
T PRK08291        159 EVRVWARDAAKAEAYAADLRAELGIPVTVARDVHE-AVAGADIIVTTTPSE-EP-----ILKAEWLHPGLHVTAMGSDAE  231 (330)
T ss_pred             EEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHH-HHccCCEEEEeeCCC-Cc-----EecHHHcCCCceEEeeCCCCC
Confidence            899999999999999987742    2222344444 456789999999864 22     2556678877767665 3344


Q ss_pred             CchHHHHHHH-HCCCeeeccHHH
Q 010101          467 RNTRLLREAA-EVGATVVSGVEM  488 (518)
Q Consensus       467 ~~T~ll~~A~-~~G~~~i~G~~m  488 (518)
                      ....+-...- ....-+++-++.
T Consensus       232 ~~rEld~~~l~~a~~v~vD~~~~  254 (330)
T PRK08291        232 HKNEIAPAVFAAADLYVCDRLSQ  254 (330)
T ss_pred             CcccCCHHHHhhCCEEEeCCHHH
Confidence            4332222222 222245666554

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=99.31  E-value=6.2e-12  Score=129.30  Aligned_cols=130  Identities=18%  Similarity=0.177  Sum_probs=99.0

Q ss_pred             hhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHH-HCCC-
Q 010101          314 KSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAK-SRGA-  391 (518)
Q Consensus       314 ~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~-~~G~-  391 (518)
                      ...|++|+++.+  ++.+.|+|||+.|++.+..  +.             ....++++|||+|++|++.+.+|. ..++ 
T Consensus        93 ~~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la-------------~~~~~~v~iiGaG~qA~~~~~al~~~~~i~  155 (326)
T TIGR02992        93 SRTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDSSVVAIFGAGMQARLQLEALTLVRDIR  155 (326)
T ss_pred             CCCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCcEEEEECCCHHHHHHHHHHHHhCCcc
Confidence            356999999766  7889999999999998853  21             113578999999999999999997 4787 


Q ss_pred             eEEEEeCCHHHHHHHHHHhcC----cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEe-eCC
Q 010101          392 RVIIFNRNYERAKALADAVSG----EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAV-YTP  466 (518)
Q Consensus       392 ~v~i~nRt~~ka~~la~~~~~----~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~-Y~P  466 (518)
                      +|+|+||+.++++++++++..    ....++++.+ ...++|+||+|||.. .|     .+..++++++..+..+- |.|
T Consensus       156 ~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~-av~~aDiVvtaT~s~-~p-----~i~~~~l~~g~~i~~vg~~~p  228 (326)
T TIGR02992       156 SARIWARDSAKAEALALQLSSLLGIDVTAATDPRA-AMSGADIIVTTTPSE-TP-----ILHAEWLEPGQHVTAMGSDAE  228 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHH-HhccCCEEEEecCCC-Cc-----EecHHHcCCCcEEEeeCCCCC
Confidence            899999999999999988742    2223344444 456899999999863 22     25667888888777663 344


Q ss_pred             C
Q 010101          467 R  467 (518)
Q Consensus       467 ~  467 (518)
                      .
T Consensus       229 ~  229 (326)
T TIGR02992       229 H  229 (326)
T ss_pred             C
Confidence            4

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=99.26  E-value=1.7e-11  Score=127.45  Aligned_cols=144  Identities=23%  Similarity=0.326  Sum_probs=106.5

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      +++++++||||||.|+..++.+|...|+ +|+|+|||.+||++||++++..+.+++++.+ .+.++|+||.+|+.. .|.
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~-~l~~~DvVissTsa~-~~i  252 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLE-ALAEADVVISSTSAP-HPI  252 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHH-hhhhCCEEEEecCCC-ccc
Confidence            4789999999999999999999999998 9999999999999999999988889999877 778899999999864 233


Q ss_pred             CCCCCCChhhhc-CCCEEEEEeeCCCch-------------------HHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcC
Q 010101          443 SDQSPVPKEALK-AYELVFDAVYTPRNT-------------------RLLREAAEVGATVVSGVEMFIRQALGQFRLFTG  502 (518)
Q Consensus       443 ~~~~~~~~~~l~-~~~~v~Di~Y~P~~T-------------------~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g  502 (518)
                      .....+....-. ...+++|+.- |+..                   ...++-.+..-..+.-.+.++++.+..|..|..
T Consensus       253 i~~~~ve~a~~~r~~~livDiav-PRdie~~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~~~ae~iIeee~~~~~~~l~  331 (414)
T COG0373         253 ITREMVERALKIRKRLLIVDIAV-PRDVEPEVGELPNVFLYTIDDLEEIVEENLEARKEEAAKAEAIIEEELAEFMEWLK  331 (414)
T ss_pred             cCHHHHHHHHhcccCeEEEEecC-CCCCCccccCcCCeEEEehhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222221111 2258888864 4321                   122223334455677888999999999999986


Q ss_pred             CCCCHHHH
Q 010101          503 GLAPEDFM  510 (518)
Q Consensus       503 ~~~p~~~~  510 (518)
                      ..--.+.+
T Consensus       332 ~~~~~~~i  339 (414)
T COG0373         332 KLEVVPTI  339 (414)
T ss_pred             HhhchHHH
Confidence            54433333

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=99.26  E-value=2.7e-11  Score=127.85  Aligned_cols=133  Identities=17%  Similarity=0.224  Sum_probs=97.0

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc-CcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVS-GEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~-~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ++.+++++|+|+||||++++.+|...|+ +|+|+|||.+++++|++.++ ....+++++.+ .+.++|+|||||+.+. |
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~-~l~~aDiVI~aT~a~~-~  255 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQ-LIKKADIIIAAVNVLE-Y  255 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHH-HhccCCEEEECcCCCC-e
Confidence            4778999999999999999999999998 99999999999999999997 55567777655 5678999999998753 2


Q ss_pred             CCCCCCCChhhhc-CCCEEEEEeeCCCc-------------------hHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhc
Q 010101          442 NSDQSPVPKEALK-AYELVFDAVYTPRN-------------------TRLLREAAEVGATVVSGVEMFIRQALGQFRLFT  501 (518)
Q Consensus       442 ~~~~~~~~~~~l~-~~~~v~Di~Y~P~~-------------------T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~  501 (518)
                      .     +..+.+. ...+++|+.- |+.                   ....+...+.....+.-.+.++.+.+..|.-|.
T Consensus       256 v-----i~~~~~~~~~~~~iDLav-PRdidp~v~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~iI~e~~~~f~~w~  329 (414)
T PRK13940        256 I-----VTCKYVGDKPRVFIDISI-PQALDPKLGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKIIVKSLEEYLEKE  329 (414)
T ss_pred             e-----ECHHHhCCCCeEEEEeCC-CCCCCccccCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2     2222221 2245666642 321                   112222333344456678889999999999999


Q ss_pred             CCC
Q 010101          502 GGL  504 (518)
Q Consensus       502 g~~  504 (518)
                      ...
T Consensus       330 ~~~  332 (414)
T PRK13940        330 KAI  332 (414)
T ss_pred             Hhc
Confidence            654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.24  E-value=1.2e-11  Score=125.36  Aligned_cols=120  Identities=22%  Similarity=0.210  Sum_probs=94.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.+++++|+|+|++|++++..|..+|++|++++|+.++. +.++.++.....++++.+ ...++|+||||+|..+.. 
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~-~~~~~~G~~~~~~~~l~~-~l~~aDiVI~t~p~~~i~-  224 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL-ARITEMGLSPFHLSELAE-EVGKIDIIFNTIPALVLT-  224 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHcCCeeecHHHHHH-HhCCCCEEEECCChhhhh-
Confidence            35678999999999999999999999999999999998764 445566665555555554 456799999999865321 


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeee--ccHHHHH
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVV--SGVEMFI  490 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i--~G~~ml~  490 (518)
                        ...  .+.++++.+++|+.|.|..|.| +.|++.|++++  +|+.+.+
T Consensus       225 --~~~--l~~~~~g~vIIDla~~pggtd~-~~a~~~Gv~~~~~~~lpg~v  269 (296)
T PRK08306        225 --KEV--LSKMPPEALIIDLASKPGGTDF-EYAEKRGIKALLAPGLPGKV  269 (296)
T ss_pred             --HHH--HHcCCCCcEEEEEccCCCCcCe-eehhhCCeEEEEECCCCccC
Confidence              100  1235788999999999999999 89999999988  8888665

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=99.18  E-value=2.3e-11  Score=129.44  Aligned_cols=189  Identities=23%  Similarity=0.344  Sum_probs=132.3

Q ss_pred             chHHHHhcccccChhhhhcCceeEEEEe---c--cCCeEEEeecCHHHHHHH-----HHHHHHhhccCCCCCCCCcccCC
Q 010101          298 HKEPAVACCDEVHPLAKSIGAVNTIIRR---P--IDGKLVGYNTDCESAISA-----IEDALRERQGINGVASHTSPIAG  367 (518)
Q Consensus       298 ~K~~v~~~~d~~~~~A~~iGavNTi~~~---~--~~g~l~G~NTD~~G~~~~-----l~~~l~~~~~~~~~~~~~~~l~~  367 (518)
                      =+..|+..++.....|+..|++|+++..   .  .-++..+++|+..+.-.+     ++.. ....         .++.+
T Consensus       113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~~~~Sv~~~Av~~a-~~~~---------~~~~~  182 (423)
T PRK00045        113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELA-KQIF---------GDLSG  182 (423)
T ss_pred             CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCCCCcCHHHHHHHHH-HHhh---------CCccC
Confidence            4677899999999999999999998731   0  135677888885542222     2211 1000         13678


Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQS  446 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~  446 (518)
                      ++++|+|+|++|+.++..|...|+ +|+++||+.++++++++.++.....++++.+ ...++|+||+||+... |.    
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~-~l~~aDvVI~aT~s~~-~~----  256 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPE-ALAEADIVISSTGAPH-PI----  256 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHH-HhccCCEEEECCCCCC-cE----
Confidence            999999999999999999999998 9999999999999999998765555555544 4567999999997542 21    


Q ss_pred             CCChhhhc--------CCCEEEEEeeCCCc---------------h----HHHHHHHHCCCeeeccHHHHHHHHHHHHHH
Q 010101          447 PVPKEALK--------AYELVFDAVYTPRN---------------T----RLLREAAEVGATVVSGVEMFIRQALGQFRL  499 (518)
Q Consensus       447 ~~~~~~l~--------~~~~v~Di~Y~P~~---------------T----~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~l  499 (518)
                       +..++++        ...+++|+. .|+.               .    ...++..+.....+.-.+-++.+.+..|.-
T Consensus       257 -i~~~~l~~~~~~~~~~~~vviDla-~Prdid~~v~~l~~v~l~~vDdl~~~~~~n~~~r~~~~~~a~~ii~~~~~~f~~  334 (423)
T PRK00045        257 -IGKGMVERALKARRHRPLLLVDLA-VPRDIEPEVGELPGVYLYDVDDLQEIVEENLAQRQEAAEKAEAIVEEEVAEFME  334 (423)
T ss_pred             -EcHHHHHHHHhhccCCCeEEEEeC-CCCCCcccccccCCeEEEEHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3333331        346888987 4432               1    111222223344567778889999999999


Q ss_pred             hcCCC
Q 010101          500 FTGGL  504 (518)
Q Consensus       500 w~g~~  504 (518)
                      |....
T Consensus       335 ~~~~~  339 (423)
T PRK00045        335 WLRSL  339 (423)
T ss_pred             HHHhc
Confidence            98654

>PLN00203 glutamyl-tRNA reductase

Probab=98.80  E-value=2.2e-08  Score=108.47  Aligned_cols=133  Identities=20%  Similarity=0.305  Sum_probs=94.7

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCc---ccccccccccCCCCccEEEEcCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGE---ALHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~---~~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      ++.+++++|||+|++|++++.+|...|+ +|+|+||+.++++++++.++..   ...++++.+ ...++|+||+||+.+.
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~-al~~aDVVIsAT~s~~  341 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA-CAAEADVVFTSTSSET  341 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHH-HHhcCCEEEEccCCCC
Confidence            3778999999999999999999999998 8999999999999999988522   224445444 4577999999998653


Q ss_pred             CCCCCCCCCChhhhc----------CCCEEEEEeeCCCc-------------------hHHHHHHHHCCCeeeccHHHHH
Q 010101          440 EPNSDQSPVPKEALK----------AYELVFDAVYTPRN-------------------TRLLREAAEVGATVVSGVEMFI  490 (518)
Q Consensus       440 ~~~~~~~~~~~~~l~----------~~~~v~Di~Y~P~~-------------------T~ll~~A~~~G~~~i~G~~ml~  490 (518)
                       |.     +..+.+.          ...+++|+.- |+.                   .......++.....+.-.+.++
T Consensus       342 -pv-----I~~e~l~~~~~~~~~~~~~~~~IDLAv-PRdIdp~v~~l~~v~lydiDdL~~i~~~n~~~R~~~~~~Ae~II  414 (519)
T PLN00203        342 -PL-----FLKEHVEALPPASDTVGGKRLFVDISV-PRNVGACVSELESARVYNVDDLKEVVAANKEDRLRKAMEAQTII  414 (519)
T ss_pred             -Ce-----eCHHHHHHhhhcccccCCCeEEEEeCC-CCCCccccccCCCCeEEEeccHHHHHHHhHHHHHHHHHHHHHHH
Confidence             32     2222221          1246777753 321                   1222333344445667788899


Q ss_pred             HHHHHHHHHhcCCC
Q 010101          491 RQALGQFRLFTGGL  504 (518)
Q Consensus       491 ~Qa~~qf~lw~g~~  504 (518)
                      .+.+..|.-|....
T Consensus       415 ~ee~~~F~~w~~~~  428 (519)
T PLN00203        415 REESKNFEAWRDSL  428 (519)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.77  E-value=2.9e-08  Score=105.56  Aligned_cols=134  Identities=28%  Similarity=0.452  Sum_probs=96.5

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      .+.+++++|+|+|.+|+.++..|...|+ +|+++||+.++++++++.++...+.++++.+ ...++|+||+||+... |.
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~-~l~~aDvVi~aT~s~~-~i  254 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEE-YLAEADIVISSTGAPH-PI  254 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHH-HHhhCCEEEECCCCCC-ce
Confidence            3678999999999999999999999996 9999999999999999998765555555554 4567999999997542 21


Q ss_pred             CCCCCCChhhhc-------CCCEEEEEeeCCCch---------------HHHHHHH----HCCCeeeccHHHHHHHHHHH
Q 010101          443 SDQSPVPKEALK-------AYELVFDAVYTPRNT---------------RLLREAA----EVGATVVSGVEMFIRQALGQ  496 (518)
Q Consensus       443 ~~~~~~~~~~l~-------~~~~v~Di~Y~P~~T---------------~ll~~A~----~~G~~~i~G~~ml~~Qa~~q  496 (518)
                           +..+.+.       ...+++|+. .|+.-               .-+++.-    +.....+.-.+-++.+.+..
T Consensus       255 -----i~~e~l~~~~~~~~~~~~viDla-~Prdid~~v~~l~~v~l~~vDdl~~~~~~n~~~r~~~~~~a~~ii~~~~~~  328 (417)
T TIGR01035       255 -----VSKEDVERALRERTRPLFIIDIA-VPRDVDPAVARLEGVFLYDVDDLQPVVEENLAERREEAEKAEEIVEEETAE  328 (417)
T ss_pred             -----EcHHHHHHHHhcCCCCeEEEEeC-CCCCCChhhcCcCCeEEEEHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                 3333332       234889997 55421               1122222    22333466777889999999


Q ss_pred             HHHhcCCCC
Q 010101          497 FRLFTGGLA  505 (518)
Q Consensus       497 f~lw~g~~~  505 (518)
                      |.-|.....
T Consensus       329 f~~w~~~~~  337 (417)
T TIGR01035       329 FKQWLRSLE  337 (417)
T ss_pred             HHHHHHhcc
Confidence            999987543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.61  E-value=1.6e-07  Score=96.29  Aligned_cols=114  Identities=25%  Similarity=0.246  Sum_probs=81.1

Q ss_pred             CCcEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCc---ccccccccccCCCCccEEEEcCCCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKS-RGA-RVIIFNRNYERAKALADAVSGE---ALHFEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~-~G~-~v~i~nRt~~ka~~la~~~~~~---~~~~~~l~~~~~~~~divInatp~g~~  440 (518)
                      ..++++|||+|++|++++.++.. .+. +|+|+||++++++++++++...   ....++..+ ...++|+||++|+.. .
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~-av~~aDIVi~aT~s~-~  201 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEA-AVRQADIISCATLST-E  201 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHH-HHhcCCEEEEeeCCC-C
Confidence            46899999999999999987775 566 8999999999999999987432   222233333 456799999999854 2


Q ss_pred             CCCCCCCCChhhhcCCCEEEEEeeC--CCchHHHHHHHHCCCeeeccHH
Q 010101          441 PNSDQSPVPKEALKAYELVFDAVYT--PRNTRLLREAAEVGATVVSGVE  487 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di~Y~--P~~T~ll~~A~~~G~~~i~G~~  487 (518)
                      |     .+..++++++. ++|+++.  |....+-.+..+++..+++=.+
T Consensus       202 p-----vl~~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~~~  244 (314)
T PRK06141        202 P-----LVRGEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDTRA  244 (314)
T ss_pred             C-----EecHHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcCHH
Confidence            2     25567888876 8898876  3223333344555666777654

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.59  E-value=1.2e-07  Score=98.58  Aligned_cols=125  Identities=25%  Similarity=0.304  Sum_probs=92.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC--ccc--ccc---cccccCCCCccEEEEcCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSG--EAL--HFE---YLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~--~~~--~~~---~l~~~~~~~~divInatp~g~  439 (518)
                      ++++|||+|+.|+++|.-|++.|- +|+|++||.+++.+++...+.  +..  +..   .+.+ .+.+.|+|||+.|.-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~-li~~~d~VIn~~p~~~   80 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVA-LIKDFDLVINAAPPFV   80 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHH-HHhcCCEEEEeCCchh
Confidence            579999999999999999999995 999999999999999877532  222  222   2223 3567799999997532


Q ss_pred             CCCCCCCCCChhhhcCCCEEEEEeeCCCc-hHHHHHHHHCCCeeeccHH-------HHHHHHHHHHH
Q 010101          440 EPNSDQSPVPKEALKAYELVFDAVYTPRN-TRLLREAAEVGATVVSGVE-------MFIRQALGQFR  498 (518)
Q Consensus       440 ~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~-T~ll~~A~~~G~~~i~G~~-------ml~~Qa~~qf~  498 (518)
                      ..     .+-..+++.+.-++|++|.+.. -.+-.+|+++|..++.|.+       .+..+++.+|.
T Consensus        81 ~~-----~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~  142 (389)
T COG1748          81 DL-----TILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELF  142 (389)
T ss_pred             hH-----HHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhh
Confidence            11     1334567777889999998654 4456688899988776543       67778877766

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.59  E-value=2.7e-06  Score=85.18  Aligned_cols=199  Identities=19%  Similarity=0.271  Sum_probs=123.7

Q ss_pred             HHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEeccCC
Q 010101          257 NPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPIDG  329 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g  329 (518)
                      -+..+++|++.....++-    +++...++.+ .++++.|+.|-.|+-..+  ...++.++|. |-+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  128 (286)
T PRK14175         54 KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE-KDVDGFHPIN----IG  128 (286)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCCccc----hH
Confidence            367889999987776664    2566666666 577899999999964322  1122222211 1111111110    01


Q ss_pred             eEE-Ee----ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHH
Q 010101          330 KLV-GY----NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERA  403 (518)
Q Consensus       330 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka  403 (518)
                      ++. |.    ----.|++..|+.     .+        .+++||+++|+|.|+ +|+.++..|...|+.|+++++.... 
T Consensus       129 ~l~~~~~~~~PcTp~ai~~ll~~-----~~--------i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~-  194 (286)
T PRK14175        129 KLYIDEQTFVPCTPLGIMEILKH-----AD--------IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKD-  194 (286)
T ss_pred             hHhcCCCCCCCCcHHHHHHHHHH-----cC--------CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchh-
Confidence            111 11    1124556665543     12        578999999999999 9999999999999999999985321 


Q ss_pred             HHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC-------chHHHHHHH
Q 010101          404 KALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR-------NTRLLREAA  476 (518)
Q Consensus       404 ~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~-------~T~ll~~A~  476 (518)
                        |.              + ...++|+||+|++.   |.    .+..++++++.+|+|+-.+|.       ...| +.++
T Consensus       195 --l~--------------~-~~~~ADIVIsAvg~---p~----~i~~~~vk~gavVIDvGi~~~~~gkl~GDvd~-~~~~  249 (286)
T PRK14175        195 --MA--------------S-YLKDADVIVSAVGK---PG----LVTKDVVKEGAVIIDVGNTPDENGKLKGDVDY-DAVK  249 (286)
T ss_pred             --HH--------------H-HHhhCCEEEECCCC---Cc----ccCHHHcCCCcEEEEcCCCcCCCCCeecCccH-HHHH
Confidence              11              1 34568999999974   22    366788999999999998872       2333 3343


Q ss_pred             HC-C-Ce-eeccH-----HHHHHHHHHHHHH
Q 010101          477 EV-G-AT-VVSGV-----EMFIRQALGQFRL  499 (518)
Q Consensus       477 ~~-G-~~-~i~G~-----~ml~~Qa~~qf~l  499 (518)
                      ++ + +. +=.|.     -||+.+.+.+.+.
T Consensus       250 ~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~  280 (286)
T PRK14175        250 EIAGAITPVPGGVGPLTITMVLNNTLLAEKM  280 (286)
T ss_pred             hhccCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            33 2 22 22343     4888877766543

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.54  E-value=9.5e-08  Score=97.77  Aligned_cols=97  Identities=28%  Similarity=0.467  Sum_probs=74.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      +.+++++|+|+|.+|+.++..|...|+ +|+++||+.++++++++.++.....++++.+ ...++|+||.||+...... 
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~-~l~~aDvVi~at~~~~~~~-  253 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLE-LLNEADVVISATGAPHYAK-  253 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHH-HHhcCCEEEECCCCCchHH-
Confidence            678999999999999999999998887 9999999999999999999876555555544 4567899999998643200 


Q ss_pred             CCCCCChhhh----cCCCEEEEEeeCCCc
Q 010101          444 DQSPVPKEAL----KAYELVFDAVYTPRN  468 (518)
Q Consensus       444 ~~~~~~~~~l----~~~~~v~Di~Y~P~~  468 (518)
                          +....+    .++.+++|+. .|+.
T Consensus       254 ----~~~~~~~~~~~~~~~viDla-vPrd  277 (311)
T cd05213         254 ----IVERAMKKRSGKPRLIVDLA-VPRD  277 (311)
T ss_pred             ----HHHHHHhhCCCCCeEEEEeC-CCCC
Confidence                111111    2457899998 5654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.52  E-value=2.1e-06  Score=82.28  Aligned_cols=148  Identities=17%  Similarity=0.170  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccc
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF  417 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~  417 (518)
                      +.|...+++..+....+       ..+++|++++|+|.|.+|+.++..|.+.|++|++++++.++.+++++.++...++.
T Consensus         6 g~Gv~~~~~~~~~~~~~-------~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~   78 (200)
T cd01075           6 AYGVFLGMKAAAEHLLG-------TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP   78 (200)
T ss_pred             HHHHHHHHHHHHHHhcC-------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc
Confidence            56777777765554211       25789999999999999999999999999999999999999999988876554444


Q ss_pred             ccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhc--CCCEEEEEeeCCCc-hHHHHHHHHCCCeeeccHHHHHHHHH
Q 010101          418 EYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALK--AYELVFDAVYTPRN-TRLLREAAEVGATVVSGVEMFIRQAL  494 (518)
Q Consensus       418 ~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~--~~~~v~Di~Y~P~~-T~ll~~A~~~G~~~i~G~~ml~~Qa~  494 (518)
                      +++.   ..++|++++++.-+.        +..+.+.  +..+|++-.-+|.. -.--+.-+++|+.++|..-......+
T Consensus        79 ~~l~---~~~~Dv~vp~A~~~~--------I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~NaGGv~  147 (200)
T cd01075          79 EEIY---SVDADVFAPCALGGV--------INDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGGLI  147 (200)
T ss_pred             hhhc---cccCCEEEecccccc--------cCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeCcCce
Confidence            4432   236899998876431        2332221  24678888878764 23334457889988874433333334


Q ss_pred             HHHHHhcCC
Q 010101          495 GQFRLFTGG  503 (518)
Q Consensus       495 ~qf~lw~g~  503 (518)
                      ..+..|.|.
T Consensus       148 ~~~~e~~~~  156 (200)
T cd01075         148 NVADELYGG  156 (200)
T ss_pred             eehhHHhCC
Confidence            455556553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.43  E-value=6.8e-06  Score=82.78  Aligned_cols=199  Identities=17%  Similarity=0.210  Sum_probs=126.6

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCC-
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDG-  329 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g-  329 (518)
                      -.+..+++|++..-..++-    +++.+.++.+ .++.+.|+.|-.|+-.    ++|   +. +.+.+++--. + -|| 
T Consensus        54 k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~----~i~---~~-~i~~~I~p~K-D-VDGl  123 (301)
T PRK14194         54 KILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPA----HID---EA-RVLQAINPLK-D-VDGF  123 (301)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCC----CCC---HH-HHHhccCchh-c-cCcc
Confidence            3467889999987666653    3566777777 5778999999999742    121   11 1112222111 0 011 


Q ss_pred             ------eE-EEee----cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEe
Q 010101          330 ------KL-VGYN----TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFN  397 (518)
Q Consensus       330 ------~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~n  397 (518)
                            ++ .|.+    ---.|++.-|+.     .+        .+++||+++|||.| -+|+.++..|.+.|+.|++++
T Consensus       124 ~~~N~g~l~~~~~~~~PcTp~aii~lL~~-----~~--------i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~  190 (301)
T PRK14194        124 HSENVGGLSQGRDVLTPCTPSGCLRLLED-----TC--------GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVH  190 (301)
T ss_pred             ChhhhhHHhcCCCCCCCCcHHHHHHHHHH-----hC--------CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEC
Confidence                  11 1111    115566666553     12        67899999999997 699999999999999999998


Q ss_pred             CCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC----------
Q 010101          398 RNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR----------  467 (518)
Q Consensus       398 Rt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~----------  467 (518)
                      |+....++                  ...++|+||.+++-.  +     .+...+++++.+|+|+..++.          
T Consensus       191 ~~t~~l~e------------------~~~~ADIVIsavg~~--~-----~v~~~~ik~GaiVIDvgin~~~~~g~~kl~G  245 (301)
T PRK14194        191 SRSTDAKA------------------LCRQADIVVAAVGRP--R-----LIDADWLKPGAVVIDVGINRIDDDGRSRLVG  245 (301)
T ss_pred             CCCCCHHH------------------HHhcCCEEEEecCCh--h-----cccHhhccCCcEEEEecccccCCCCCcceec
Confidence            86432211                  234689999887532  1     356677899999999987752          


Q ss_pred             chHHHHHHHHCCCe-eec-cHH-----HHHHHHHHHHHHhcC
Q 010101          468 NTRLLREAAEVGAT-VVS-GVE-----MFIRQALGQFRLFTG  502 (518)
Q Consensus       468 ~T~ll~~A~~~G~~-~i~-G~~-----ml~~Qa~~qf~lw~g  502 (518)
                      +-.|-...+..++- -++ |.+     ||+...+.+.+.|.-
T Consensus       246 Dvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~  287 (301)
T PRK14194        246 DVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAH  287 (301)
T ss_pred             ccchHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            13342223334432 244 554     888888888888764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.42  E-value=1.1e-06  Score=81.65  Aligned_cols=79  Identities=25%  Similarity=0.248  Sum_probs=63.3

Q ss_pred             cccCCcEEEEEccchh-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGA-GRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~-araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .++++++++|+|+|++ |+.++..|.+.|++|+++||+.+...                 + .+.++|+||+||+...  
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-----------------~-~l~~aDiVIsat~~~~--   99 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-----------------E-HTKQADIVIVAVGKPG--   99 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-----------------H-HHhhCCEEEEcCCCCc--
Confidence            4689999999999996 88899999999999999999854321                 2 3456899999998532  


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                           .+..+.++++.+++|+.-.+
T Consensus       100 -----ii~~~~~~~~~viIDla~pr  119 (168)
T cd01080         100 -----LVKGDMVKPGAVVIDVGINR  119 (168)
T ss_pred             -----eecHHHccCCeEEEEccCCC
Confidence                 36677788889999998644

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.36  E-value=1.7e-05  Score=79.28  Aligned_cols=196  Identities=20%  Similarity=0.266  Sum_probs=126.6

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCe
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGK  330 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~  330 (518)
                      -.+.++++|++.....++-    +++.+.++.+ .+++..|+.|-.|+-..+    |   +. +.+.+++--. + -|| 
T Consensus        54 k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~----~---~~-~i~~~I~p~K-D-VDG-  122 (285)
T PRK10792         54 KRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHI----D---NV-KVLERIHPDK-D-VDG-  122 (285)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCC----C---HH-HHHhccCccc-c-cCc-
Confidence            3467899999987776653    3577777777 477899999999975321    1   11 1222222111 1 011 


Q ss_pred             EEEee-------------cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEE
Q 010101          331 LVGYN-------------TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIF  396 (518)
Q Consensus       331 l~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~  396 (518)
                      ++-+|             ---.|++..|+.     .        ..+++||+++|+|-|. .|+.++.-|...|+.|+++
T Consensus       123 l~~~n~g~l~~~~~~~~PcTp~av~~ll~~-----~--------~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~  189 (285)
T PRK10792        123 FHPYNVGRLAQRIPLLRPCTPRGIMTLLER-----Y--------GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVC  189 (285)
T ss_pred             cChhhHhHHhCCCCCCCCCCHHHHHHHHHH-----c--------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEE
Confidence            11111             124566666543     1        2678999999999998 9999999999999999999


Q ss_pred             eCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC-------ch
Q 010101          397 NRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR-------NT  469 (518)
Q Consensus       397 nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~-------~T  469 (518)
                      .+....                 +.+ ...++|+||+|++.   |.    .+..++++++.+|+|+-.++.       ..
T Consensus       190 hs~T~~-----------------l~~-~~~~ADIvi~avG~---p~----~v~~~~vk~gavVIDvGin~~~~gk~~GDv  244 (285)
T PRK10792        190 HRFTKN-----------------LRH-HVRNADLLVVAVGK---PG----FIPGEWIKPGAIVIDVGINRLEDGKLVGDV  244 (285)
T ss_pred             ECCCCC-----------------HHH-HHhhCCEEEEcCCC---cc----cccHHHcCCCcEEEEcccccccCCCcCCCc
Confidence            875221                 222 34568999999853   22    367789999999999987752       24


Q ss_pred             HHHHHHHHC-C-Ceeec-c-----HHHHHHHHHHHHHHhc
Q 010101          470 RLLREAAEV-G-ATVVS-G-----VEMFIRQALGQFRLFT  501 (518)
Q Consensus       470 ~ll~~A~~~-G-~~~i~-G-----~~ml~~Qa~~qf~lw~  501 (518)
                      .| +.+++. . +.-++ |     ..||+...+.+.+.|.
T Consensus       245 d~-~~~~~~a~~itPvPGGVGp~T~a~L~~N~~~a~~~~~  283 (285)
T PRK10792        245 EF-ETAAERASWITPVPGGVGPMTVATLLENTLQACEEYH  283 (285)
T ss_pred             CH-HHHHhhccCcCCCCCCChHHHHHHHHHHHHHHHHHhh
Confidence            44 333332 2 22233 3     4588888888888775

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.34  E-value=2.5e-06  Score=89.33  Aligned_cols=100  Identities=20%  Similarity=0.266  Sum_probs=74.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----cccccccccCCCCccEEEEcCCC-CC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEYLHEFFPEKGMILANASAI-GM  439 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~l~~~~~~~~divInatp~-g~  439 (518)
                      +.+++++|+|+|++|+.++..|..+|++|++++|+.++++.+++.++...    ...+++.+ .+.++|+||||++. |.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~-~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIED-AVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHH-HHccCCEEEEccccCCC
Confidence            45678999999999999999999999999999999999998888776421    12233434 35679999999865 32


Q ss_pred             CCCCCCCCCChh---hhcCCCEEEEEeeCCCc
Q 010101          440 EPNSDQSPVPKE---ALKAYELVFDAVYTPRN  468 (518)
Q Consensus       440 ~~~~~~~~~~~~---~l~~~~~v~Di~Y~P~~  468 (518)
                      . .  +..+..+   .++++.+++|+.+.|..
T Consensus       244 ~-~--p~lit~~~l~~mk~g~vIvDva~d~GG  272 (370)
T TIGR00518       244 K-A--PKLVSNSLVAQMKPGAVIVDVAIDQGG  272 (370)
T ss_pred             C-C--CcCcCHHHHhcCCCCCEEEEEecCCCC
Confidence            1 1  1123443   25678999999987653

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.32  E-value=1.5e-06  Score=89.41  Aligned_cols=89  Identities=24%  Similarity=0.334  Sum_probs=67.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCHHHHHHHHHHhcC----cccccccccccCCCCccEEEEcCCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAK-SRGA-RVIIFNRNYERAKALADAVSG----EALHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~-~~G~-~v~i~nRt~~ka~~la~~~~~----~~~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      ..++++|+|+|++|++.+.++. ..++ +|+|+||++++++++++++..    ....++++++ ...++|+||+|||.+ 
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~aDiVi~aT~s~-  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADE-AIEEADIIVTVTNAK-  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEccCCC-
Confidence            3578999999999999998876 4688 999999999999999987642    2223444444 456799999999966 


Q ss_pred             CCCCCCCCCChhhhcCCCEEEEE
Q 010101          440 EPNSDQSPVPKEALKAYELVFDA  462 (518)
Q Consensus       440 ~~~~~~~~~~~~~l~~~~~v~Di  462 (518)
                      .|     .+. ++++++..|.=+
T Consensus       204 ~p-----~i~-~~l~~G~hV~~i  220 (325)
T PRK08618        204 TP-----VFS-EKLKKGVHINAV  220 (325)
T ss_pred             Cc-----chH-HhcCCCcEEEec
Confidence            33     256 788887766544

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.26  E-value=4.2e-06  Score=85.38  Aligned_cols=97  Identities=22%  Similarity=0.199  Sum_probs=68.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCcccc--cccccccCCCCccEEEEcCCCCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKS-RGA-RVIIFNRNYERAKALADAVSGEALH--FEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~-~G~-~v~i~nRt~~ka~~la~~~~~~~~~--~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..++++|+|+|++|++.+.++.. .+. +|+|+||++++++++++++......  .+++.+ ...++|+||+|||.. .|
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~-av~~aDiVitaT~s~-~P  201 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEA-IPEAVDLVVTATTSR-TP  201 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHH-HhhcCCEEEEccCCC-Cc
Confidence            46899999999999999999975 677 8999999999999999988532111  233443 456899999999865 23


Q ss_pred             CCCCCCCChhhhcCCCEEEEE-eeCCCchH
Q 010101          442 NSDQSPVPKEALKAYELVFDA-VYTPRNTR  470 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di-~Y~P~~T~  470 (518)
                      .     +.. +++++..+.=+ .|.|....
T Consensus       202 l-----~~~-~~~~g~hi~~iGs~~p~~~E  225 (304)
T PRK07340        202 V-----YPE-AARAGRLVVAVGAFTPDMAE  225 (304)
T ss_pred             e-----eCc-cCCCCCEEEecCCCCCCccc
Confidence            2     233 46666544433 34454433

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.23  E-value=2.8e-05  Score=77.90  Aligned_cols=204  Identities=17%  Similarity=0.221  Sum_probs=124.7

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEeccC
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPID  328 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~  328 (518)
                      --+.++++|++.....++-    +++.+.++.+ .+.++.|+.|-.|+-..+  ...++.++|. |-+-..+..    +-
T Consensus        53 k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~-KDVDGl~~~----n~  127 (285)
T PRK14189         53 KVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE-KDVDGFHVA----NA  127 (285)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChh----hh
Confidence            3467899999987766663    3577777777 467899999999975221  1111111111 111111110    00


Q ss_pred             CeE-EEee----cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchh-HHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          329 GKL-VGYN----TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGA-GRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       329 g~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~-araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      |++ .|.+    ---.|+++-|+.     .+        .++.||+++|+|.|+. |+.++.-|...|+.|+++.+... 
T Consensus       128 g~l~~~~~~~~PcTp~aii~lL~~-----~~--------i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~-  193 (285)
T PRK14189        128 GALMTGQPLFRPCTPYGVMKMLES-----IG--------IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR-  193 (285)
T ss_pred             hHhhCCCCCCcCCCHHHHHHHHHH-----cC--------CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC-
Confidence            111 1111    114566665543     12        6789999999999996 99999999999999999875321 


Q ss_pred             HHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC-------chHHHHHH
Q 010101          403 AKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR-------NTRLLREA  475 (518)
Q Consensus       403 a~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~-------~T~ll~~A  475 (518)
                                      ++.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++.       +..|-...
T Consensus       194 ----------------~l~~-~~~~ADIVV~avG~---~~----~i~~~~ik~gavVIDVGin~~~~gkl~GDVd~~~v~  249 (285)
T PRK14189        194 ----------------DLAA-HTRQADIVVAAVGK---RN----VLTADMVKPGATVIDVGMNRDDAGKLCGDVDFAGVK  249 (285)
T ss_pred             ----------------CHHH-HhhhCCEEEEcCCC---cC----ccCHHHcCCCCEEEEccccccCCCCeeCCccHHHHH
Confidence                            1222 34678999998872   32    377889999999999987762       12332222


Q ss_pred             HHCCC-e-eeccHH-----HHHHHHHHHHHHhcC
Q 010101          476 AEVGA-T-VVSGVE-----MFIRQALGQFRLFTG  502 (518)
Q Consensus       476 ~~~G~-~-~i~G~~-----ml~~Qa~~qf~lw~g  502 (518)
                      +..++ . +=.|.+     ||+...+.+.+.+.+
T Consensus       250 ~~a~~iTPVPGGVGp~T~a~Ll~N~~~a~~~~~~  283 (285)
T PRK14189        250 EVAGYITPVPGGVGPMTITMLLVNTIEAAERAAA  283 (285)
T ss_pred             hhceEecCCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence            23333 2 334544     888887777665543

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.23  E-value=1.3e-05  Score=65.92  Aligned_cols=79  Identities=25%  Similarity=0.435  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcccc
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALH  416 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~  416 (518)
                      +.|.+..|+...+..         ..++++++++|+|+|++|+.++..|.+.|. +|+++||                  
T Consensus         3 ~~~~~~~l~~~~~~~---------~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------   55 (86)
T cd05191           3 AAGAVALLKAAGKVT---------NKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------   55 (86)
T ss_pred             hHHHHHHHHHHHHHh---------CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------
Confidence            567777777654321         146789999999999999999999999865 9999998                  


Q ss_pred             cccccccCCCCccEEEEcCCCCCCCCCCCCCCCh---hhhcCCCEEEEE
Q 010101          417 FEYLHEFFPEKGMILANASAIGMEPNSDQSPVPK---EALKAYELVFDA  462 (518)
Q Consensus       417 ~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~---~~l~~~~~v~Di  462 (518)
                                  |++|++|+.+..       +.+   ..+.+..+|+|+
T Consensus        56 ------------di~i~~~~~~~~-------~~~~~~~~~~~~~~v~~~   85 (86)
T cd05191          56 ------------DILVTATPAGVP-------VLEEATAKINEGAVVIDL   85 (86)
T ss_pred             ------------CEEEEcCCCCCC-------chHHHHHhcCCCCEEEec
Confidence                        899999986532       223   456778889986

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=3.4e-05  Score=77.21  Aligned_cols=197  Identities=20%  Similarity=0.243  Sum_probs=123.3

Q ss_pred             HHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCeE
Q 010101          257 NPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKL  331 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l  331 (518)
                      .+..+++|++.....++-    +++.+.++.+ .++.+.|+.|-.|+-..+    |   + -+.+.+++-- ++ -|| +
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i----~---~-~~i~~~I~p~-KD-VDG-l  122 (284)
T PRK14179         54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHI----N---E-EKILLAIDPK-KD-VDG-F  122 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCC----C---H-HHHHhccCcc-cc-ccc-c
Confidence            377899999988777763    3566677766 567899999999975322    1   1 1111111111 00 011 2


Q ss_pred             EEee-------------cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEe
Q 010101          332 VGYN-------------TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFN  397 (518)
Q Consensus       332 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~n  397 (518)
                      +-+|             ---.|++.-|+.     .+        .+++||+++|||. |-+|+.++..|.+.|+.|+++.
T Consensus       123 ~~~N~g~l~~~~~~~~PcTp~avi~lL~~-----~~--------i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~  189 (284)
T PRK14179        123 HPMNTGHLWSGRPVMIPCTPAGIMEMFRE-----YN--------VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH  189 (284)
T ss_pred             CHhhHHHHhCCCCCCcCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence            2222             123455555543     12        6789999999999 6699999999999999999983


Q ss_pred             CCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC-------chH
Q 010101          398 RNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR-------NTR  470 (518)
Q Consensus       398 Rt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~-------~T~  470 (518)
                      ..   .+.              +.+ ...++|+||.+++..   .    .+..++++++.+|+|+-.++.       +-.
T Consensus       190 s~---t~~--------------l~~-~~~~ADIVI~avg~~---~----~v~~~~ik~GavVIDvgin~~~~gkl~GDVd  244 (284)
T PRK14179        190 SR---TRN--------------LAE-VARKADILVVAIGRG---H----FVTKEFVKEGAVVIDVGMNRDENGKLIGDVD  244 (284)
T ss_pred             CC---CCC--------------HHH-HHhhCCEEEEecCcc---c----cCCHHHccCCcEEEEecceecCCCCeecCcc
Confidence            21   111              111 235689999887532   1    366778999999999988762       123


Q ss_pred             HHHHHHHCCC-e-eeccHH-----HHHHHHHHHHHHhcC
Q 010101          471 LLREAAEVGA-T-VVSGVE-----MFIRQALGQFRLFTG  502 (518)
Q Consensus       471 ll~~A~~~G~-~-~i~G~~-----ml~~Qa~~qf~lw~g  502 (518)
                      |-...+..++ . +=.|.+     ||+...+.+.+.|..
T Consensus       245 f~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~  283 (284)
T PRK14179        245 FDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALRSLH  283 (284)
T ss_pred             HHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence            3222222333 2 334544     888888888888763

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.17  E-value=5.6e-06  Score=85.09  Aligned_cols=110  Identities=22%  Similarity=0.301  Sum_probs=79.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcC-cccccccccccCCCCccEEEEcCCCC
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKS-RGA-RVIIFNRNYERAKALADAVSG-EALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~-~G~-~v~i~nRt~~ka~~la~~~~~-~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ..+++++++|+|| |.+|+.++..|.. .|+ +|+++||+.++++.++++++. ...+   +.+ ...++|+||.+|+..
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~---l~~-~l~~aDiVv~~ts~~  226 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILS---LEE-ALPEADIVVWVASMP  226 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHh---HHH-HHccCCEEEECCcCC
Confidence            3578999999999 6799999999985 477 999999999999999988752 2222   333 456789999999764


Q ss_pred             CCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeec
Q 010101          439 MEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVS  484 (518)
Q Consensus       439 ~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~  484 (518)
                      ..     ..+.++.++++.+++|+.+-...-|-.  ++ -|+.+++
T Consensus       227 ~~-----~~I~~~~l~~~~~viDiAvPRDVd~~v--~~-~~V~v~~  264 (340)
T PRK14982        227 KG-----VEIDPETLKKPCLMIDGGYPKNLDTKV--QG-PGIHVLK  264 (340)
T ss_pred             cC-----CcCCHHHhCCCeEEEEecCCCCCCccc--CC-CCEEEEe
Confidence            21     125556678889999998743322211  22 6777744

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=98.13  E-value=4.7e-06  Score=96.48  Aligned_cols=126  Identities=19%  Similarity=0.234  Sum_probs=93.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-e-------------EEEEeCCHHHHHHHHHHh-cCcccc--c---ccccccCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-R-------------VIIFNRNYERAKALADAV-SGEALH--F---EYLHEFFP  425 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~-------------v~i~nRt~~ka~~la~~~-~~~~~~--~---~~l~~~~~  425 (518)
                      ..|+|+|||||.+|+.++..|++..- +             |+|++++.++++++++.+ +...+.  +   +++.. ..
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~-~v  646 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLK-YV  646 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHH-hh
Confidence            46799999999999999999987542 4             999999999999999887 433222  2   23333 23


Q ss_pred             CCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeC-CCchHHHHHHHHCCCeeeccHH-------HHHHHHHHHH
Q 010101          426 EKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYT-PRNTRLLREAAEVGATVVSGVE-------MFIRQALGQF  497 (518)
Q Consensus       426 ~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~-P~~T~ll~~A~~~G~~~i~G~~-------ml~~Qa~~qf  497 (518)
                      .++|+||+++|..++.     ++...++..+.-++|..|. +....+.++|+++|..+++|..       |+..+.+.++
T Consensus       647 ~~~DaVIsalP~~~H~-----~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~~lA~~~Id~~  721 (1042)
T PLN02819        647 SQVDVVISLLPASCHA-----VVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDPGIDHMMAMKMIDDA  721 (1042)
T ss_pred             cCCCEEEECCCchhhH-----HHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccCHHHHHHHHHHHHHhh
Confidence            5699999999986543     2455677777778899987 4455778899999988776544       6666666665

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.13  E-value=4e-05  Score=76.68  Aligned_cols=168  Identities=20%  Similarity=0.282  Sum_probs=107.7

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEeccC
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPID  328 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~  328 (518)
                      -.+.++++|++.....++-    +++...++.+ .+.++.|+.|-.|+...+  ...++.++|. +-+-..+-.    +-
T Consensus        59 k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~----N~  133 (287)
T PRK14176         59 KHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA-KDADGFHPY----NM  133 (287)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-ccccccChh----hh
Confidence            3477899999988777754    2566777777 577899999999975322  1111111111 110000000    00


Q ss_pred             CeEE-Ee----ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          329 GKLV-GY----NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       329 g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      |++. |.    ----.|++..|+.     .+        .+++||+++|+|.|. .|+.++.-|...|+.|++++.... 
T Consensus       134 g~l~~g~~~~~PcTp~av~~ll~~-----~~--------i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~-  199 (287)
T PRK14176        134 GKLMIGDEGLVPCTPHGVIRALEE-----YG--------VDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD-  199 (287)
T ss_pred             hhHhcCCCCCCCCcHHHHHHHHHH-----cC--------CCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC-
Confidence            1111 11    1124566666543     12        678999999999998 999999999999999999984322 


Q ss_pred             HHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          403 AKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       403 a~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                                      ++.+ ...++|+||+|+..   |.    .+..++++++.+|+|+-.+.
T Consensus       200 ----------------~l~~-~~~~ADIvv~AvG~---p~----~i~~~~vk~gavVIDvGin~  239 (287)
T PRK14176        200 ----------------DLKK-YTLDADILVVATGV---KH----LIKADMVKEGAVIFDVGITK  239 (287)
T ss_pred             ----------------CHHH-HHhhCCEEEEccCC---cc----ccCHHHcCCCcEEEEecccc
Confidence                            1122 33568999998853   22    36788999999999998764

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=0.00015  Score=72.63  Aligned_cols=203  Identities=17%  Similarity=0.247  Sum_probs=125.7

Q ss_pred             HHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEeccCC
Q 010101          257 NPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPIDG  329 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g  329 (518)
                      .+..+++|++.....++-    +++.+.++.+ .+.++.|+-|-+|+...+  ...++.++|. |-+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  128 (284)
T PRK14190         54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE-KDVDGFHPIN----VG  128 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccCHhh----HH
Confidence            467899999987776664    2577777777 577899999999975321  1111111111 1111111100    01


Q ss_pred             eE-EEe----ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHH
Q 010101          330 KL-VGY----NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERA  403 (518)
Q Consensus       330 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka  403 (518)
                      ++ .|.    ----.|++.-|+.     .+        .+++||+++|+|.+. .||.++.-|.+.|+.|+++...... 
T Consensus       129 ~l~~~~~~~~PcTp~av~~lL~~-----~~--------i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~-  194 (284)
T PRK14190        129 RMMLGQDTFLPCTPHGILELLKE-----YN--------IDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKN-  194 (284)
T ss_pred             HHhcCCCCCCCCCHHHHHHHHHH-----cC--------CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchh-
Confidence            11 110    0124455555443     12        678999999999986 9999999999999999999643221 


Q ss_pred             HHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc-------hHHHHHHH
Q 010101          404 KALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN-------TRLLREAA  476 (518)
Q Consensus       404 ~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~-------T~ll~~A~  476 (518)
                        |              .+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.+...       -.| +.++
T Consensus       195 --l--------------~~-~~~~ADIvI~AvG~---p~----~i~~~~ik~gavVIDvGi~~~~~gkl~GDvd~-e~v~  249 (284)
T PRK14190        195 --L--------------AE-LTKQADILIVAVGK---PK----LITADMVKEGAVVIDVGVNRLENGKLCGDVDF-DNVK  249 (284)
T ss_pred             --H--------------HH-HHHhCCEEEEecCC---CC----cCCHHHcCCCCEEEEeeccccCCCCeeccCcH-HHHh
Confidence              1              11 23568999988853   22    3788899999999999877521       234 3333


Q ss_pred             H-CCC--eeeccHH-----HHHHHHHHHHHHhcCC
Q 010101          477 E-VGA--TVVSGVE-----MFIRQALGQFRLFTGG  503 (518)
Q Consensus       477 ~-~G~--~~i~G~~-----ml~~Qa~~qf~lw~g~  503 (518)
                      + .++  ++-.|.+     ||+..-+.+++.|.|+
T Consensus       250 ~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~  284 (284)
T PRK14190        250 EKASYITPVPGGVGPMTITMLMHNTVELAKRAGGR  284 (284)
T ss_pred             hhceEecCCCCCChHHHHHHHHHHHHHHHHHhhcC
Confidence            3 332  2334544     8899888888877663

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=0.00018  Score=72.05  Aligned_cols=200  Identities=17%  Similarity=0.209  Sum_probs=119.9

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEeccC
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPID  328 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~  328 (518)
                      -.+..+++|++.....++-    +++.+.++.+ .++.+.|+-|-.|+...+  ...++.++|. +-+-..+..-    -
T Consensus        52 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~  126 (285)
T PRK14191         52 KIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN-KDVDGFHPLN----I  126 (285)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccChhh----H
Confidence            3467899999987666664    2577777777 477899999999975211  1111111111 1111111100    0


Q ss_pred             CeE-EEee----cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          329 GKL-VGYN----TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       329 g~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      |++ .|.+    ---.|+++-|+.     .+        .+++||+|+|+|.| -.|+.++.-|.+.|+.|+++..... 
T Consensus       127 g~l~~g~~~~~PcTp~avi~lL~~-----~~--------i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~-  192 (285)
T PRK14191        127 GKLCSQLDGFVPATPMGVMRLLKH-----YH--------IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTK-  192 (285)
T ss_pred             HHHhcCCCCCCCCcHHHHHHHHHH-----hC--------CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcH-
Confidence            111 1111    224555555543     12        67899999999999 6999999999999999999864322 


Q ss_pred             HHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC-------chHHHHHH
Q 010101          403 AKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR-------NTRLLREA  475 (518)
Q Consensus       403 a~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~-------~T~ll~~A  475 (518)
                        .|.+               ...++|+||.|++.   |.    .+..++++++.+|+|+-.++.       +-.+-...
T Consensus       193 --~l~~---------------~~~~ADIvV~AvG~---p~----~i~~~~vk~GavVIDvGi~~~~~gklvGDvd~e~v~  248 (285)
T PRK14191        193 --DLSF---------------YTQNADIVCVGVGK---PD----LIKASMVKKGAVVVDIGINRLNDGRLVGDVDFENVA  248 (285)
T ss_pred             --HHHH---------------HHHhCCEEEEecCC---CC----cCCHHHcCCCcEEEEeecccccCCceeccccHHHHh
Confidence              1211               23568999988842   22    377889999999999987652       23332222


Q ss_pred             HHCCC-e-eeccH-----HHHHHHHHHHHH
Q 010101          476 AEVGA-T-VVSGV-----EMFIRQALGQFR  498 (518)
Q Consensus       476 ~~~G~-~-~i~G~-----~ml~~Qa~~qf~  498 (518)
                      ...++ . +-.|.     -||+.+.+.+++
T Consensus       249 ~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~  278 (285)
T PRK14191        249 PKASFITPVPGGVGPMTIVSLLENTLIAAE  278 (285)
T ss_pred             hhccEEecCCCCChHHHHHHHHHHHHHHHH
Confidence            22333 2 22344     377777766654

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=2.3e-05  Score=79.11  Aligned_cols=157  Identities=15%  Similarity=0.141  Sum_probs=103.5

Q ss_pred             HHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCeE
Q 010101          257 NPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKL  331 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l  331 (518)
                      -+..+++|++..-..++-    +++.+.++.+ .++++.|+.|-.|+-..    +|   +. +.   .|.|-..+ |  .
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~----~~---~~-~i---~~~I~p~K-D--V  119 (296)
T PRK14188         54 GKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKH----LD---SE-AV---IQAIDPEK-D--V  119 (296)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC----CC---HH-HH---HhccCccc-c--c
Confidence            367889999976554442    3577777777 57789999999997522    11   11 11   12221110 0  1


Q ss_pred             EEeecC----------------HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEc-cchhHHHHHHHHHHCCCeEE
Q 010101          332 VGYNTD----------------CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVG-AGGAGRALAFGAKSRGARVI  394 (518)
Q Consensus       332 ~G~NTD----------------~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlG-aGg~araia~~L~~~G~~v~  394 (518)
                      -|.+..                -.|++.-|+.     .+        .+++||+|+|+| .|-+|+.++..|.+.|+.|+
T Consensus       120 DGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~-----~~--------i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt  186 (296)
T PRK14188        120 DGLHVVNAGRLATGETALVPCTPLGCMMLLRR-----VH--------GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT  186 (296)
T ss_pred             ccCChhhHHHHhCCCCCCcCCCHHHHHHHHHH-----hC--------CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE
Confidence            112111                5566665543     12        578999999999 78899999999999999999


Q ss_pred             EE-eCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          395 IF-NRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       395 i~-nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                      ++ +||.+- +                 + ...++|+||.+++-.   .    .+...+++++.+|+|+-.+.
T Consensus       187 v~~~rT~~l-~-----------------e-~~~~ADIVIsavg~~---~----~v~~~~lk~GavVIDvGin~  233 (296)
T PRK14188        187 IAHSRTRDL-P-----------------A-VCRRADILVAAVGRP---E----MVKGDWIKPGATVIDVGINR  233 (296)
T ss_pred             EECCCCCCH-H-----------------H-HHhcCCEEEEecCCh---h----hcchheecCCCEEEEcCCcc
Confidence            99 588531 1                 1 224589999888632   1    35566789999999998765

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.07  E-value=1.8e-06  Score=91.00  Aligned_cols=123  Identities=29%  Similarity=0.388  Sum_probs=84.1

Q ss_pred             EEEEccchhHHHHHHHHHHCC-C-eEEEEeCCHHHHHHHHHHhcC---cc--cccc---cccccCCCCccEEEEcCCCCC
Q 010101          370 FVLVGAGGAGRALAFGAKSRG-A-RVIIFNRNYERAKALADAVSG---EA--LHFE---YLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       370 vlvlGaGg~araia~~L~~~G-~-~v~i~nRt~~ka~~la~~~~~---~~--~~~~---~l~~~~~~~~divInatp~g~  439 (518)
                      |+|+|+|.+|++++..|.+.+ . +|++.+|+.++++++++.+..   ..  ++..   ++.+ ...++|+||||.+.-.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~~~~dvVin~~gp~~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAE-LLRGCDVVINCAGPFF   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHH-HHTTSSEEEE-SSGGG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHH-HHhcCCEEEECCccch
Confidence            689999999999999999886 4 899999999999999876422   11  1222   2333 3567899999997531


Q ss_pred             CCCCCCCCCChhhhcCCCEEEEEee-CCCchHHHHHHHHCCCeeeccHH-------HHHHHHHHHHH
Q 010101          440 EPNSDQSPVPKEALKAYELVFDAVY-TPRNTRLLREAAEVGATVVSGVE-------MFIRQALGQFR  498 (518)
Q Consensus       440 ~~~~~~~~~~~~~l~~~~~v~Di~Y-~P~~T~ll~~A~~~G~~~i~G~~-------ml~~Qa~~qf~  498 (518)
                           ..++-..++..+.-.+|..| .+....+-++|+++|..++.|.+       +++.+++.+|.
T Consensus        80 -----~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~  141 (386)
T PF03435_consen   80 -----GEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELD  141 (386)
T ss_dssp             -----HHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhh
Confidence                 11233456777778899766 44456677889999988876654       88999999988

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.05  E-value=5e-05  Score=69.57  Aligned_cols=97  Identities=23%  Similarity=0.216  Sum_probs=63.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.||+++|+|.|..||.+|..|..+|++|+|+.+++-++-+-+. -|.+..+++   + .+..+|++|.||...  . 
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~-dGf~v~~~~---~-a~~~adi~vtaTG~~--~-   90 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAM-DGFEVMTLE---E-ALRDADIFVTATGNK--D-   90 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH-TT-EEE-HH---H-HTTT-SEEEE-SSSS--S-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh-cCcEecCHH---H-HHhhCCEEEECCCCc--c-
Confidence            5688999999999999999999999999999999999988654332 233333333   3 456789999998531  1 


Q ss_pred             CCCCCCCh---hhhcCCCEEEEEeeCCCchHH
Q 010101          443 SDQSPVPK---EALKAYELVFDAVYTPRNTRL  471 (518)
Q Consensus       443 ~~~~~~~~---~~l~~~~~v~Di~Y~P~~T~l  471 (518)
                          -+..   ..++++.++.++-..+.+-.+
T Consensus        91 ----vi~~e~~~~mkdgail~n~Gh~d~Eid~  118 (162)
T PF00670_consen   91 ----VITGEHFRQMKDGAILANAGHFDVEIDV  118 (162)
T ss_dssp             ----SB-HHHHHHS-TTEEEEESSSSTTSBTH
T ss_pred             ----ccCHHHHHHhcCCeEEeccCcCceeEee
Confidence                1333   346788999988887777655

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=0.00013  Score=72.91  Aligned_cols=197  Identities=18%  Similarity=0.211  Sum_probs=125.2

Q ss_pred             HHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCC--
Q 010101          257 NPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDG--  329 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g--  329 (518)
                      .++.+++|++.....++-    +++.+.++.+ .++++.|+.|-.|....+    |   + -+.+.+++--. + -||  
T Consensus        52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i----~---~-~~i~~~I~p~K-D-VDGl~  121 (282)
T PRK14182         52 RKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHV----D---E-RAVLDAISPAK-D-ADGFH  121 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCC----C---H-HHHHhccCccc-C-cCCCC
Confidence            367899999988777753    3577777777 577899999999985321    1   1 11222222211 0 011  


Q ss_pred             -----eE-EEe-----ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEe
Q 010101          330 -----KL-VGY-----NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFN  397 (518)
Q Consensus       330 -----~l-~G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~n  397 (518)
                           ++ .|.     -.--.|+++-|+.     .+        .+++||+++|+|-+. .|+.++.-|.+.|+.|+++.
T Consensus       122 ~~n~g~l~~g~~~~~~PcTp~avi~ll~~-----~~--------i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtich  188 (282)
T PRK14182        122 PFNVGALSIGIAGVPRPCTPAGVMRMLDE-----AR--------VDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAH  188 (282)
T ss_pred             HhHHHHHhCCCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence                 11 111     1125666666553     12        678999999999986 99999999999999999987


Q ss_pred             CCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC-------chH
Q 010101          398 RNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR-------NTR  470 (518)
Q Consensus       398 Rt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~-------~T~  470 (518)
                      .....                 +.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.+..       +..
T Consensus       189 s~T~n-----------------l~~-~~~~ADIvI~AvGk---~~----~i~~~~ik~gaiVIDvGin~~~~gkl~GDVd  243 (282)
T PRK14182        189 SRTAD-----------------LAG-EVGRADILVAAIGK---AE----LVKGAWVKEGAVVIDVGMNRLADGKLVGDVE  243 (282)
T ss_pred             CCCCC-----------------HHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEEeeceecCCCCeeCCCC
Confidence            54221                 112 23568999988853   32    478899999999999977652       233


Q ss_pred             HHHHHHHCCC-e-eeccH-----HHHHHHHHHHHHHhc
Q 010101          471 LLREAAEVGA-T-VVSGV-----EMFIRQALGQFRLFT  501 (518)
Q Consensus       471 ll~~A~~~G~-~-~i~G~-----~ml~~Qa~~qf~lw~  501 (518)
                      |-...+..++ . +-.|.     -||+.+.+.+.+.|.
T Consensus       244 ~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~~~~~~~  281 (282)
T PRK14182        244 FAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKRTA  281 (282)
T ss_pred             HHHHHhhccEecCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence            3222333343 2 33454     488888888777663

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.04  E-value=1.2e-05  Score=82.50  Aligned_cols=60  Identities=13%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCccccccccc----ccCCCCccEEEEcCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEYLH----EFFPEKGMILANASA  436 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~----~~~~~~~divInatp  436 (518)
                      ++.++++||||+|.||+.++.+|.+.|+ +|+|+|||.++ .           +++++.    + ...++|+||.||+
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~-----------~~~~~~~~~~~-~~~~~DvVIs~t~  235 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-L-----------PYRTVVREELS-FQDPYDVIFFGSS  235 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-c-----------chhhhhhhhhh-cccCCCEEEEcCC
Confidence            5789999999999999999999999998 89999999853 1           122111    1 2356899999854

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.02  E-value=0.00033  Score=70.01  Aligned_cols=192  Identities=23%  Similarity=0.290  Sum_probs=121.7

Q ss_pred             HHHHHHcCCCceEEecccC----cHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCeE
Q 010101          257 NPAFRHTRFNGIYVPMLVD----DVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKL  331 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~~----~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l  331 (518)
                      .+..+++|++.....++-+    ++.+.++.+ .++++.|+-|-.|.-..+    |+   . +.+.+++-- ++ -|| +
T Consensus        48 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i----~~---~-~v~~~I~p~-KD-VDG-l  116 (279)
T PRK14178         48 HRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGV----DT---E-RVIAAILPE-KD-VDG-F  116 (279)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCC----CH---H-HHHhccCcc-cC-ccc-C
Confidence            4678999999877777542    577777777 577899999999975322    11   0 111111111 00 011 2


Q ss_pred             EEee-------------cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEe
Q 010101          332 VGYN-------------TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFN  397 (518)
Q Consensus       332 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~n  397 (518)
                      +-+|             ---.|++.-|+.     .+        .+++|++++|+|.+ -.||.++.-|...|+.|+++.
T Consensus       117 ~~~n~g~l~~~~~~~~PcTp~av~~ll~~-----~~--------i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~h  183 (279)
T PRK14178        117 HPLNLGRLVSGLPGFAPCTPNGIMTLLHE-----YK--------ISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICH  183 (279)
T ss_pred             ChhhHHHHhCCCCCCCCCCHHHHHHHHHH-----cC--------CCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEe
Confidence            1111             124566665543     12        67899999999999 699999999999999999998


Q ss_pred             CCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC------CchHH
Q 010101          398 RNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP------RNTRL  471 (518)
Q Consensus       398 Rt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P------~~T~l  471 (518)
                      ++....++                  ...++|+||+|++.   |    ..+..++++++.+|+|+..+.      ....|
T Consensus       184 s~t~~L~~------------------~~~~ADIvI~Avgk---~----~lv~~~~vk~GavVIDVgi~~~~gkl~GDvdf  238 (279)
T PRK14178        184 SKTENLKA------------------ELRQADILVSAAGK---A----GFITPDMVKPGATVIDVGINQVNGKLCGDVDF  238 (279)
T ss_pred             cChhHHHH------------------HHhhCCEEEECCCc---c----cccCHHHcCCCcEEEEeeccccCCCCcCCccH
Confidence            76432211                  23568999999952   1    137788899999999999874      23444


Q ss_pred             HHHHHHC-CC-eee-ccH-----HHHHHHHHHHHH
Q 010101          472 LREAAEV-GA-TVV-SGV-----EMFIRQALGQFR  498 (518)
Q Consensus       472 l~~A~~~-G~-~~i-~G~-----~ml~~Qa~~qf~  498 (518)
                       +.++++ ++ .-+ .|.     .||+...+.+.+
T Consensus       239 -~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~  272 (279)
T PRK14178        239 -DAVKEIAGAITPVPGGVGPMTIATLMENTFDAAK  272 (279)
T ss_pred             -HHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence             334333 32 222 343     377776665543

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.01  E-value=3.6e-06  Score=70.35  Aligned_cols=88  Identities=30%  Similarity=0.301  Sum_probs=62.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCC---CeEEEE-eCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRG---ARVIIF-NRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G---~~v~i~-nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      ++.|||+|.+|.+++..|.+.|   .+|+++ +|+++++++++++++......+ ..+ ...++|+||.|+++...+.  
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~-~~~~advvilav~p~~~~~--   76 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADD-NEE-AAQEADVVILAVKPQQLPE--   76 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEE-HHH-HHHHTSEEEE-S-GGGHHH--
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCC-hHH-hhccCCEEEEEECHHHHHH--
Confidence            5789999999999999999999   689965 9999999999999875432211 111 2346899999998654322  


Q ss_pred             CCCCChh--hhcCCCEEEEEe
Q 010101          445 QSPVPKE--ALKAYELVFDAV  463 (518)
Q Consensus       445 ~~~~~~~--~l~~~~~v~Di~  463 (518)
                         +..+  .+.++.+++|+.
T Consensus        77 ---v~~~i~~~~~~~~vis~~   94 (96)
T PF03807_consen   77 ---VLSEIPHLLKGKLVISIA   94 (96)
T ss_dssp             ---HHHHHHHHHTTSEEEEES
T ss_pred             ---HHHHHhhccCCCEEEEeC
Confidence               1111  245678888874

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=9.1e-05  Score=74.06  Aligned_cols=198  Identities=17%  Similarity=0.204  Sum_probs=120.6

Q ss_pred             HHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEeccCCe
Q 010101          258 PAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPIDGK  330 (518)
Q Consensus       258 ~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~g~  330 (518)
                      +.++++|++.....++-    +++.+.++.+ .++...|+.|-.|+...+  ...++.++|. |-+-..+-.    +-|+
T Consensus        54 k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~----n~g~  128 (282)
T PRK14180         54 KACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE-KDVDGFHPT----NVGR  128 (282)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc-ccccccChh----hHHH
Confidence            67899999987776654    3577777777 577899999999975322  1122111111 111111100    0011


Q ss_pred             E-EEee-----cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHH
Q 010101          331 L-VGYN-----TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERA  403 (518)
Q Consensus       331 l-~G~N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka  403 (518)
                      + .|.+     ---.|++.-|+.     .+        .+++||+++|+|-+. .|+.++.-|.+.|+.|+++.+.... 
T Consensus       129 l~~g~~~~~~PcTp~aii~lL~~-----y~--------i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~d-  194 (282)
T PRK14180        129 LQLRDKKCLESCTPKGIMTMLRE-----YG--------IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTD-  194 (282)
T ss_pred             HhcCCCCCcCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCC-
Confidence            1 2211     124566665543     12        678999999999986 9999999999999999999754221 


Q ss_pred             HHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC------chHHHHHHHH
Q 010101          404 KALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR------NTRLLREAAE  477 (518)
Q Consensus       404 ~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~------~T~ll~~A~~  477 (518)
                                      +.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.+..      +-.+-...+.
T Consensus       195 ----------------l~~-~~k~ADIvIsAvGk---p~----~i~~~~vk~gavVIDvGin~~~gkl~GDvd~~~v~~~  250 (282)
T PRK14180        195 ----------------LKS-HTTKADILIVAVGK---PN----FITADMVKEGAVVIDVGINHVDGKIVGDVDFAAVKDK  250 (282)
T ss_pred             ----------------HHH-HhhhcCEEEEccCC---cC----cCCHHHcCCCcEEEEecccccCCceeCCcCHHHHHhh
Confidence                            111 23568999988753   22    377889999999999977652      2333222222


Q ss_pred             CC-Ceeec-cHH-----HHHHHHHHHHH
Q 010101          478 VG-ATVVS-GVE-----MFIRQALGQFR  498 (518)
Q Consensus       478 ~G-~~~i~-G~~-----ml~~Qa~~qf~  498 (518)
                      .+ +.-++ |.+     ||+...+.+.+
T Consensus       251 a~~iTPVPGGVGp~T~a~L~~Nl~~a~~  278 (282)
T PRK14180        251 VAAITPVPGGVGPMTITELLYNTFQCAQ  278 (282)
T ss_pred             ccEeccCCCChhHHHHHHHHHHHHHHHH
Confidence            33 33344 554     77777666544

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=0.00028  Score=70.63  Aligned_cols=197  Identities=20%  Similarity=0.260  Sum_probs=122.4

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCe
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGK  330 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~  330 (518)
                      -.+..+++|++.....++-    +++.+.++.+ .++.+.|+.|-.|.-..+    |   +. +.+.+++--. + -|| 
T Consensus        52 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i----~---~~-~i~~~I~p~K-D-VDG-  120 (284)
T PRK14170         52 KQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHI----S---EE-KVIDTISYDK-D-VDG-  120 (284)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCC----C---HH-HHHhccCccc-C-ccc-
Confidence            3367889999987666654    2566667766 577899999999975321    1   11 1112222111 0 011 


Q ss_pred             EEEee-------------cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEE
Q 010101          331 LVGYN-------------TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIF  396 (518)
Q Consensus       331 l~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~  396 (518)
                      ++-+|             ---.|++.-|+.     .+        .+++||+++|+|-+. .||.++.-|.+.|+.|+++
T Consensus       121 l~p~N~g~l~~~~~~~~PcTp~avi~lL~~-----~~--------i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtic  187 (284)
T PRK14170        121 FHPVNVGNLFIGKDSFVPCTPAGIIELIKS-----TG--------TQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIA  187 (284)
T ss_pred             CChhhhhHHhCCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEe
Confidence            11111             115566666543     12        678999999999987 9999999999999999998


Q ss_pred             eCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC-c------h
Q 010101          397 NRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR-N------T  469 (518)
Q Consensus       397 nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~-~------T  469 (518)
                      ......                 +.+ ...++||||.|++.   |.    .+..++++++.+|+|+-.+.. .      -
T Consensus       188 hs~T~~-----------------l~~-~~~~ADIvI~AvG~---~~----~i~~~~vk~GavVIDvGin~~~~gkl~GDv  242 (284)
T PRK14170        188 HSRTKD-----------------LPQ-VAKEADILVVATGL---AK----FVKKDYIKPGAIVIDVGMDRDENNKLCGDV  242 (284)
T ss_pred             CCCCCC-----------------HHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEEccCcccCCCCeeccc
Confidence            653211                 112 23568999988853   22    377889999999999987752 1      3


Q ss_pred             HHHHHHHHCCC-e-eeccHH-----HHHHHHHHHHHHhc
Q 010101          470 RLLREAAEVGA-T-VVSGVE-----MFIRQALGQFRLFT  501 (518)
Q Consensus       470 ~ll~~A~~~G~-~-~i~G~~-----ml~~Qa~~qf~lw~  501 (518)
                      .|-...+..++ . +=.|.+     ||+...+.+.+.+.
T Consensus       243 dfe~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~  281 (284)
T PRK14170        243 DFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIW  281 (284)
T ss_pred             chHHHHhhccEecCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence            33222223333 2 334554     77777777665543

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.95  E-value=0.00029  Score=72.03  Aligned_cols=197  Identities=22%  Similarity=0.265  Sum_probs=124.2

Q ss_pred             HHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCC--
Q 010101          257 NPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDG--  329 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g--  329 (518)
                      .++.+++|++..-..++-    +++.+.++.+ .++++.|+-|-.|+...    +|   +. +.+.+++-- ++ -||  
T Consensus       108 ~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~h----id---~~-~i~~~I~p~-KD-VDGl~  177 (345)
T PLN02897        108 IKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQH----LD---ES-KILNMVRLE-KD-VDGFH  177 (345)
T ss_pred             HHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CC---HH-HHHhccCcc-cC-ccCCC
Confidence            367889999877666654    2566777777 57789999999997522    21   11 122222211 11 011  


Q ss_pred             -----eE-EEee------cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEE
Q 010101          330 -----KL-VGYN------TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIF  396 (518)
Q Consensus       330 -----~l-~G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~  396 (518)
                           ++ .|.+      ---.|++.-|+.     .+        .+++||+++|||-+. .|+.++.-|.+.|+.|+++
T Consensus       178 p~N~G~L~~~~~~~~~~PCTp~avi~LL~~-----~~--------i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTic  244 (345)
T PLN02897        178 PLNVGNLAMRGREPLFVSCTPKGCVELLIR-----SG--------VEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTV  244 (345)
T ss_pred             HHHHHHHhcCCCCCCCcCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEE
Confidence                 12 1111      124566665543     12        678999999999986 9999999999999999998


Q ss_pred             eCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCch-------
Q 010101          397 NRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNT-------  469 (518)
Q Consensus       397 nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T-------  469 (518)
                      ......                 +.+ ...++||||.|++.   |.    .+..++++++.+|+|+-.++.+.       
T Consensus       245 Hs~T~n-----------------l~~-~~~~ADIvIsAvGk---p~----~v~~d~vk~GavVIDVGin~~~~~~~~~g~  299 (345)
T PLN02897        245 HAFTKD-----------------PEQ-ITRKADIVIAAAGI---PN----LVRGSWLKPGAVVIDVGTTPVEDSSCEFGY  299 (345)
T ss_pred             cCCCCC-----------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEccccccccccccCCC
Confidence            753221                 111 23568999988853   22    37788999999999998776321       


Q ss_pred             ------HHHHHHHHCCC-e-eeccHH-----HHHHHHHHHHHHhc
Q 010101          470 ------RLLREAAEVGA-T-VVSGVE-----MFIRQALGQFRLFT  501 (518)
Q Consensus       470 ------~ll~~A~~~G~-~-~i~G~~-----ml~~Qa~~qf~lw~  501 (518)
                            .|-...+..++ . +=.|.+     ||+...+.+.+.|.
T Consensus       300 klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~~~~~  344 (345)
T PLN02897        300 RLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRIF  344 (345)
T ss_pred             eeEecccHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHHHHhc
Confidence                  23222233343 2 334554     88888888877774

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=0.00033  Score=70.57  Aligned_cols=203  Identities=20%  Similarity=0.293  Sum_probs=124.3

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEeccC
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPID  328 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~  328 (518)
                      -.+..+++|++.....++-    +++.+.++.+ .++++.|+.|-.|+-..+  -..++.++|. +-+-..+..-    -
T Consensus        54 k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~  128 (297)
T PRK14168         54 KIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD-KDVDGFHPVN----V  128 (297)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-ccccccChhh----H
Confidence            3467889999976555543    3577777777 577899999999964211  1111111111 1111111110    0


Q ss_pred             CeE-EEee------cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHC----CCeEEEE
Q 010101          329 GKL-VGYN------TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSR----GARVIIF  396 (518)
Q Consensus       329 g~l-~G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~----G~~v~i~  396 (518)
                      |++ .|.+      ---.|+++-|+.     .+        .+++||+++|+|.+. .|+.++.-|.+.    ++.|+++
T Consensus       129 g~l~~~~~~~~~~PcTp~avi~lL~~-----~~--------i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~  195 (297)
T PRK14168        129 GRLMIGGDEVKFLPCTPAGIQEMLVR-----SG--------VETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIV  195 (297)
T ss_pred             HHHhcCCCCCCCcCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEe
Confidence            111 1111      115566666543     12        678999999999986 999999999988    6799998


Q ss_pred             eCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC---------
Q 010101          397 NRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR---------  467 (518)
Q Consensus       397 nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~---------  467 (518)
                      .+...                 ++.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.+..         
T Consensus       196 hs~T~-----------------~l~~-~~~~ADIvVsAvGk---p~----~i~~~~ik~gavVIDvGin~~~~~~~~g~~  250 (297)
T PRK14168        196 HTRSK-----------------NLAR-HCQRADILIVAAGV---PN----LVKPEWIKPGATVIDVGVNRVGTNESTGKA  250 (297)
T ss_pred             cCCCc-----------------CHHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEecCCCccCccccCCCc
Confidence            64321                 1111 23568999988853   22    378899999999999965531         


Q ss_pred             ----chHHHHHHHH-CCC--eeeccHH-----HHHHHHHHHHHHhcC
Q 010101          468 ----NTRLLREAAE-VGA--TVVSGVE-----MFIRQALGQFRLFTG  502 (518)
Q Consensus       468 ----~T~ll~~A~~-~G~--~~i~G~~-----ml~~Qa~~qf~lw~g  502 (518)
                          +-.| +.+++ .++  ++=.|.+     ||++..+.+.+.|.|
T Consensus       251 ~~~GDVdf-e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~  296 (297)
T PRK14168        251 ILSGDVDF-DAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLS  296 (297)
T ss_pred             ceeccccH-HHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence                1223 33333 332  2334544     999999999999987

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.93  E-value=6.7e-06  Score=76.07  Aligned_cols=111  Identities=21%  Similarity=0.232  Sum_probs=69.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSP  447 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~  447 (518)
                      +++.+||.|-||++++..|.+.|++|+++||++++++++.+.-....-+..++    ..++|+|+.+.|-+-.  .....
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~----~~~~dvvi~~v~~~~~--v~~v~   75 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEA----AEQADVVILCVPDDDA--VEAVL   75 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHH----HHHBSEEEE-SSSHHH--HHHHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhH----hhcccceEeecccchh--hhhhh
Confidence            47899999999999999999999999999999999999987631111223332    3457999988874311  00000


Q ss_pred             CC---hhhhcCCCEEEEEeeC-CCch-HHHHHHHHCCCeeec
Q 010101          448 VP---KEALKAYELVFDAVYT-PRNT-RLLREAAEVGATVVS  484 (518)
Q Consensus       448 ~~---~~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~i~  484 (518)
                      ..   ...+.++.+++|+... |..+ .+.+.++++|+.+++
T Consensus        76 ~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd  117 (163)
T PF03446_consen   76 FGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVD  117 (163)
T ss_dssp             HCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEE
T ss_pred             hhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeee
Confidence            11   1235678899999886 4433 333444667876543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.91  E-value=1.3e-05  Score=80.32  Aligned_cols=109  Identities=19%  Similarity=0.217  Sum_probs=76.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-ccccccccCCCCccEEEEcCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-HFEYLHEFFPEKGMILANASAIGMEPNSDQSP  447 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-~~~~l~~~~~~~~divInatp~g~~~~~~~~~  447 (518)
                      ++.+||.|-||..++..|.+.|+.++++||+++++.+++...|.... +..+    ....+|+||.+.|-+  +......
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~e----aa~~aDvVitmv~~~--~~V~~V~   75 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAE----AAAEADVVITMLPDD--AAVRAVL   75 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHH----HHHhCCEEEEecCCH--HHHHHHH
Confidence            68899999999999999999999999999999998888777665432 2222    345689999776532  1111111


Q ss_pred             CCh----hhhcCCCEEEEEeeC-CCch-HHHHHHHHCCCeee
Q 010101          448 VPK----EALKAYELVFDAVYT-PRNT-RLLREAAEVGATVV  483 (518)
Q Consensus       448 ~~~----~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~i  483 (518)
                      +.+    +.++++.+++|+... |..+ .+.+.++++|+..+
T Consensus        76 ~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l  117 (286)
T COG2084          76 FGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL  117 (286)
T ss_pred             hCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence            221    234678999999887 5443 44455677777654

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=0.00018  Score=71.81  Aligned_cols=161  Identities=20%  Similarity=0.207  Sum_probs=105.5

Q ss_pred             HHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCeE
Q 010101          257 NPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKL  331 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l  331 (518)
                      .+..+++|++.....++-    +++.+.++.+ .+.++.|+.|-+|+...    +|   + -+.+.+++--. + -|| +
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~----~~---~-~~i~~~I~p~K-D-VDG-l  122 (278)
T PRK14172         54 EKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKH----LD---E-KKITNKIDANK-D-IDC-L  122 (278)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CC---H-HHHHhccCccc-c-cCc-c
Confidence            377899999988777763    3566667767 47789999999997522    21   1 11222222211 1 011 1


Q ss_pred             EEee-------------cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEe
Q 010101          332 VGYN-------------TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFN  397 (518)
Q Consensus       332 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~n  397 (518)
                      +=+|             ---.|+++-|+.     .+        .+++||+++|+|-+. .|+.++.-|.+.|+.|+++.
T Consensus       123 ~~~n~g~l~~g~~~~~PcTp~av~~lL~~-----~~--------i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~ch  189 (278)
T PRK14172        123 TFISVGKFYKGEKCFLPCTPNSVITLIKS-----LN--------IDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICH  189 (278)
T ss_pred             CHhhHHHHhCCCCCCcCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence            1111             123455555543     12        678999999999986 99999999999999999997


Q ss_pred             CCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          398 RNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       398 Rt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                      .....                 +.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++
T Consensus       190 s~T~~-----------------l~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gavVIDvGin~  233 (278)
T PRK14172        190 SKTKN-----------------LKE-VCKKADILVVAIGR---PK----FIDEEYVKEGAIVIDVGTSS  233 (278)
T ss_pred             CCCCC-----------------HHH-HHhhCCEEEEcCCC---cC----ccCHHHcCCCcEEEEeeccc
Confidence            53221                 111 23568999988753   22    37788999999999996655

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=0.00048  Score=69.47  Aligned_cols=202  Identities=19%  Similarity=0.224  Sum_probs=122.4

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEeccC
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPID  328 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~  328 (518)
                      --+..+++|++..-..++-    +++.+.++.+ .+++..|+.|-.|+-..+  ...++.+++. +-+-..+..-    -
T Consensus        53 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~  127 (297)
T PRK14186         53 KEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD-KDADGLHPLN----L  127 (297)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----H
Confidence            3467889999987555543    3577777777 567899999999975322  1112111111 1111111100    0


Q ss_pred             CeE-EEe----ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          329 GKL-VGY----NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       329 g~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      |++ .|.    ----.|++.-|+.     .+        .+++||+++|+|-+. .|+.++.-|.+.|+.|+++......
T Consensus       128 g~l~~~~~~~~PcTp~aii~lL~~-----~~--------i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~  194 (297)
T PRK14186        128 GRLVKGEPGLRSCTPAGVMRLLRS-----QQ--------IDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQD  194 (297)
T ss_pred             HHHhCCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCC
Confidence            111 111    1125666666553     12        678999999999986 9999999999999999998643221


Q ss_pred             HHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc-----------hHH
Q 010101          403 AKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN-----------TRL  471 (518)
Q Consensus       403 a~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~-----------T~l  471 (518)
                                       +.+ ...++||||.|++.   |+    .+..++++++.+|+|+-.++..           -.|
T Consensus       195 -----------------l~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gavVIDvGin~~~~~~~~gkl~GDvd~  249 (297)
T PRK14186        195 -----------------LAS-ITREADILVAAAGR---PN----LIGAEMVKPGAVVVDVGIHRLPSSDGKTRLCGDVDF  249 (297)
T ss_pred             -----------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEeccccccccccCCceeCCccH
Confidence                             111 23568999988753   22    3778899999999999877531           223


Q ss_pred             HHHHHHCCC--eeeccHH-----HHHHHHHHHHHHh
Q 010101          472 LREAAEVGA--TVVSGVE-----MFIRQALGQFRLF  500 (518)
Q Consensus       472 l~~A~~~G~--~~i~G~~-----ml~~Qa~~qf~lw  500 (518)
                      -...+..++  ++=.|.+     ||+.+.+.+++.-
T Consensus       250 ~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~  285 (297)
T PRK14186        250 EEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKR  285 (297)
T ss_pred             HHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHh
Confidence            122222332  2334544     8888877776553

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=0.00016  Score=72.40  Aligned_cols=200  Identities=18%  Similarity=0.267  Sum_probs=121.2

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEeccC
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPID  328 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~  328 (518)
                      -.+.++++|++.....++-    +++.+.++.+ .+.++.|+.|-+|+...+  ...++.++|. +-+-..+..-    -
T Consensus        54 k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~  128 (284)
T PRK14177         54 KVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE-KDVDGVTTLS----F  128 (284)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cccccCChhh----H
Confidence            3478899999988776653    3566677777 467899999999975321  1111111111 1111111100    0


Q ss_pred             CeE-EEee----cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          329 GKL-VGYN----TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       329 g~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      |++ .|..    .--.|+++-|+.     .+        .+++||+++|+|-+. .|+.++.-|.+.|+.|++++..-..
T Consensus       129 g~l~~g~~~~~PcTp~avi~ll~~-----y~--------i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~  195 (284)
T PRK14177        129 GKLSMGVETYLPCTPYGMVLLLKE-----YG--------IDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQN  195 (284)
T ss_pred             HHHHcCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCC
Confidence            111 1111    124566665543     12        678999999999986 9999999999999999998843221


Q ss_pred             HHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC---chHHHHHHHHCC
Q 010101          403 AKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR---NTRLLREAAEVG  479 (518)
Q Consensus       403 a~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~---~T~ll~~A~~~G  479 (518)
                                       +.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.+..   +-.|-......+
T Consensus       196 -----------------l~~-~~~~ADIvIsAvGk---~~----~i~~~~ik~gavVIDvGin~~~~GDVd~~~v~~~a~  250 (284)
T PRK14177        196 -----------------LPS-IVRQADIIVGAVGK---PE----FIKADWISEGAVLLDAGYNPGNVGDIEISKAKDKSS  250 (284)
T ss_pred             -----------------HHH-HHhhCCEEEEeCCC---cC----ccCHHHcCCCCEEEEecCcccccCCcCHHHHhhhcc
Confidence                             111 23568999987753   22    377889999999999987643   233322222233


Q ss_pred             C--eeeccHH-----HHHHHHHHHHH
Q 010101          480 A--TVVSGVE-----MFIRQALGQFR  498 (518)
Q Consensus       480 ~--~~i~G~~-----ml~~Qa~~qf~  498 (518)
                      +  ++=.|.+     ||+.+.+..++
T Consensus       251 ~iTPVPGGVGp~T~a~L~~N~~~a~~  276 (284)
T PRK14177        251 FYTPVPGGVGPMTIAVLLLQTLYSFK  276 (284)
T ss_pred             EecCCCCCChHHHHHHHHHHHHHHHH
Confidence            2  2334555     78888776653

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=0.00022  Score=71.52  Aligned_cols=162  Identities=19%  Similarity=0.258  Sum_probs=105.9

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCe
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGK  330 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~  330 (518)
                      --+.++++|++.....++-    +++.+.++.+ .++++.|+.|-+|+...    +|   + -+.+.+++--. + -|| 
T Consensus        53 k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~----id---~-~~i~~~I~p~K-D-VDG-  121 (288)
T PRK14171         53 KIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSS----ID---K-NKILSAVSPSK-D-IDG-  121 (288)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCC----CC---H-HHHHhccCccc-c-ccc-
Confidence            3467899999987777753    3566666666 46789999999997532    11   1 11222222211 0 011 


Q ss_pred             EEEee--------------cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEE
Q 010101          331 LVGYN--------------TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVII  395 (518)
Q Consensus       331 l~G~N--------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i  395 (518)
                      ++-+|              ---.|++.-|+.     .+        .+++||+++|+|-+. .|+.++.-|.+.|+.|++
T Consensus       122 l~~~N~g~l~~g~~~~~~PcTp~av~~lL~~-----y~--------i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVti  188 (288)
T PRK14171        122 FHPLNVGYLHSGISQGFIPCTALGCLAVIKK-----YE--------PNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTI  188 (288)
T ss_pred             CCccchhhhhcCCCCCCcCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence            22222              114556665543     12        678999999999986 999999999999999999


Q ss_pred             EeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          396 FNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       396 ~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                      ++..-..                 +.+ ...++||||.|++.   |.    .+..++++++.+|+|+-.+.
T Consensus       189 chs~T~~-----------------L~~-~~~~ADIvV~AvGk---p~----~i~~~~vk~GavVIDvGin~  234 (288)
T PRK14171        189 CHSKTHN-----------------LSS-ITSKADIVVAAIGS---PL----KLTAEYFNPESIVIDVGINR  234 (288)
T ss_pred             eCCCCCC-----------------HHH-HHhhCCEEEEccCC---CC----ccCHHHcCCCCEEEEeeccc
Confidence            8842111                 111 23568999988752   22    47788999999999998775

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.88  E-value=0.00038  Score=70.20  Aligned_cols=197  Identities=18%  Similarity=0.239  Sum_probs=121.8

Q ss_pred             HHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccC---
Q 010101          257 NPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPID---  328 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~---  328 (518)
                      .+..+++|++..-..++-    +++.+.++.+ .++++.|+.|-.|+-..    +|   + -+.+.+++--. + -|   
T Consensus        61 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~----id---~-~~i~~~I~p~K-D-VDGl~  130 (299)
T PLN02516         61 RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKH----IN---E-EKILNEISLEK-D-VDGFH  130 (299)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCC----cC---H-HHHHhccCccc-c-cCccC
Confidence            367889999976555543    3577777777 57789999999997421    11   1 11112222110 0 01   


Q ss_pred             ----CeEE-E--e----ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEE
Q 010101          329 ----GKLV-G--Y----NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIF  396 (518)
Q Consensus       329 ----g~l~-G--~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~  396 (518)
                          |++. |  .    ----.|++.-|+.     .+        .+++||+++|+|-+. .||.++.-|.+.|+.|+++
T Consensus       131 ~~n~g~l~~~~~~~~~~PcTp~avi~lL~~-----~~--------i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvc  197 (299)
T PLN02516        131 PLNIGKLAMKGREPLFLPCTPKGCLELLSR-----SG--------IPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVV  197 (299)
T ss_pred             HhhHhhHhcCCCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEe
Confidence                1221 1  1    1113555555543     12        678999999999986 9999999999999999999


Q ss_pred             eCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCch-------
Q 010101          397 NRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNT-------  469 (518)
Q Consensus       397 nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T-------  469 (518)
                      +.....                 +.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.+....       
T Consensus       198 hs~T~n-----------------l~~-~~~~ADIvv~AvGk---~~----~i~~~~vk~gavVIDvGin~~~~~~~~~g~  252 (299)
T PLN02516        198 HSRTPD-----------------PES-IVREADIVIAAAGQ---AM----MIKGDWIKPGAAVIDVGTNAVSDPSKKSGY  252 (299)
T ss_pred             CCCCCC-----------------HHH-HHhhCCEEEEcCCC---cC----ccCHHHcCCCCEEEEeeccccCcccccCCC
Confidence            753221                 112 23568999988743   22    47788999999999997765211       


Q ss_pred             HHH-----HHHHHC-CC--eeeccH-----HHHHHHHHHHHHHhc
Q 010101          470 RLL-----REAAEV-GA--TVVSGV-----EMFIRQALGQFRLFT  501 (518)
Q Consensus       470 ~ll-----~~A~~~-G~--~~i~G~-----~ml~~Qa~~qf~lw~  501 (518)
                      .+.     +.+++. ++  ++-.|.     -||+...+.+.+.|+
T Consensus       253 kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~  297 (299)
T PLN02516        253 RLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVF  297 (299)
T ss_pred             ceEcCcChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            010     222222 22  233354     488888888887775

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.88  E-value=0.00054  Score=70.42  Aligned_cols=198  Identities=22%  Similarity=0.271  Sum_probs=122.9

Q ss_pred             HHHHHHcCCCceEEecccC----cHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCC--
Q 010101          257 NPAFRHTRFNGIYVPMLVD----DVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDG--  329 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~~----~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g--  329 (518)
                      .+..+++|++..-..++-+    ++.+.++.+ .++++.|+.|-.|+...    +|+   . +.+.+++--. + -||  
T Consensus       125 ~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~----id~---~-~i~~aI~P~K-D-VDGl~  194 (364)
T PLN02616        125 KKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSH----MDE---Q-NILNAVSIEK-D-VDGFH  194 (364)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCC----CCH---H-HHHhccCccc-C-cccCC
Confidence            3678999999765555432    566677777 46789999999998532    111   1 1112222111 1 011  


Q ss_pred             -----eEE-Ee-e-----cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEE
Q 010101          330 -----KLV-GY-N-----TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIF  396 (518)
Q Consensus       330 -----~l~-G~-N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~  396 (518)
                           ++. |. +     ---.|++.-|+.     .+        .+++||+|+|||-+. .|+.++.-|.+.|+.|+++
T Consensus       195 p~N~G~L~~g~~~~~f~PCTp~avielL~~-----y~--------i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTic  261 (364)
T PLN02616        195 PLNIGRLAMRGREPLFVPCTPKGCIELLHR-----YN--------VEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV  261 (364)
T ss_pred             hhhhHHHhcCCCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEe
Confidence                 121 10 1     114666666553     12        678999999999986 9999999999999999998


Q ss_pred             eCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc--------
Q 010101          397 NRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN--------  468 (518)
Q Consensus       397 nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~--------  468 (518)
                      ...-..                 +.+ ...++||||.|++.   |.    .+..++++++.+|+|+-.++..        
T Consensus       262 Hs~T~n-----------------l~~-~~r~ADIVIsAvGk---p~----~i~~d~vK~GAvVIDVGIn~~~~~~~~~g~  316 (364)
T PLN02616        262 HSRTKN-----------------PEE-ITREADIIISAVGQ---PN----MVRGSWIKPGAVVIDVGINPVEDASSPRGY  316 (364)
T ss_pred             CCCCCC-----------------HHH-HHhhCCEEEEcCCC---cC----cCCHHHcCCCCEEEeccccccccccccCCC
Confidence            753221                 112 23568999988853   22    3778899999999999766421        


Q ss_pred             -----hHHHHHHHHCCC--eeeccHH-----HHHHHHHHHHHHhcC
Q 010101          469 -----TRLLREAAEVGA--TVVSGVE-----MFIRQALGQFRLFTG  502 (518)
Q Consensus       469 -----T~ll~~A~~~G~--~~i~G~~-----ml~~Qa~~qf~lw~g  502 (518)
                           -.|-...+..++  ++=.|.+     ||+..-+.+.+.+.+
T Consensus       317 klvGDVdfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa~~~~~  362 (364)
T PLN02616        317 RLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIHN  362 (364)
T ss_pred             eEEecCcHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHhhc
Confidence                 233222233333  2445665     778877777665543

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.85  E-value=0.00026  Score=70.84  Aligned_cols=166  Identities=16%  Similarity=0.216  Sum_probs=105.7

Q ss_pred             HHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHH--hcccccChhhhhcCceeEEEEeccCCe
Q 010101          258 PAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAV--ACCDEVHPLAKSIGAVNTIIRRPIDGK  330 (518)
Q Consensus       258 ~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~iGavNTi~~~~~~g~  330 (518)
                      +..+++|++.....++-    +++.+.++.+ .++++.|+.|-.|+...+-  ..+..++|. +-+-..+.+ +   -|+
T Consensus        53 k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~-N---~g~  127 (282)
T PRK14166         53 KACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS-KDVDGFHPI-N---VGY  127 (282)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChh-h---hHH
Confidence            66789999987776653    3566666666 4678999999999753221  111111111 111111111 0   011


Q ss_pred             E-EEee-----cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHH
Q 010101          331 L-VGYN-----TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERA  403 (518)
Q Consensus       331 l-~G~N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka  403 (518)
                      + .|.+     ---.|++.-|+.     .+        .+++||+++|+|-+. .||.++.-|.+.|+.|+++.+.....
T Consensus       128 l~~g~~~~~~PcTp~avi~lL~~-----y~--------i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl  194 (282)
T PRK14166        128 LNLGLESGFLPCTPLGVMKLLKA-----YE--------IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDL  194 (282)
T ss_pred             HhcCCCCCCcCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCH
Confidence            1 1211     114566665543     12        678999999999986 99999999999999999988643221


Q ss_pred             HHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          404 KALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       404 ~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                                       .+ ...++||||.|++.   |.    .+..++++++.+|+|+-.++
T Consensus       195 -----------------~~-~~~~ADIvIsAvGk---p~----~i~~~~vk~GavVIDvGin~  232 (282)
T PRK14166        195 -----------------SL-YTRQADLIIVAAGC---VN----LLRSDMVKEGVIVVDVGINR  232 (282)
T ss_pred             -----------------HH-HHhhCCEEEEcCCC---cC----ccCHHHcCCCCEEEEecccc
Confidence                             11 23568999988753   22    37788999999999997765

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.85  E-value=0.00074  Score=67.72  Aligned_cols=194  Identities=18%  Similarity=0.229  Sum_probs=122.2

Q ss_pred             HHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCeE
Q 010101          257 NPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKL  331 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l  331 (518)
                      .++.+++|++.....++-    +++.+.++.+ .++...|+.|-.|+-..    +|   +. +.+.+++.-. + -|| +
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~----id---~~-~i~~~I~p~K-D-VDG-l  121 (286)
T PRK14184         53 ERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKG----LD---SQ-RCLELIDPAK-D-VDG-F  121 (286)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCC----CC---HH-HHHhccCccc-C-ccc-C
Confidence            367899999988777664    3566777777 57789999999997532    22   11 1222222211 1 012 2


Q ss_pred             EEee-------------cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHH----CCCeE
Q 010101          332 VGYN-------------TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKS----RGARV  393 (518)
Q Consensus       332 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~----~G~~v  393 (518)
                      +-+|             ---.|++.-|+.     .+        .+++||+++|+|-+. .|+.++.-|.+    .|+.|
T Consensus       122 ~~~N~g~l~~~~~~~~PcTp~av~~lL~~-----~~--------i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtV  188 (286)
T PRK14184        122 HPENMGRLALGLPGFRPCTPAGVMTLLER-----YG--------LSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATV  188 (286)
T ss_pred             CHhhHHHHhCCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEE
Confidence            2222             124566665543     12        678999999999986 99999999998    78899


Q ss_pred             EEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC------
Q 010101          394 IIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR------  467 (518)
Q Consensus       394 ~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~------  467 (518)
                      +++..+....   .              + ...++|+||.|++.   |.    .+..++++++.+|+|+-.++.      
T Consensus       189 t~~hs~t~~l---~--------------~-~~~~ADIVI~AvG~---p~----li~~~~vk~GavVIDVGi~~~~~~l~G  243 (286)
T PRK14184        189 TVCHSRTPDL---A--------------E-ECREADFLFVAIGR---PR----FVTADMVKPGAVVVDVGINRTDDGLVG  243 (286)
T ss_pred             EEEeCCchhH---H--------------H-HHHhCCEEEEecCC---CC----cCCHHHcCCCCEEEEeeeeccCCCccC
Confidence            9987653221   1              1 23568999988842   32    377889999999999987762      


Q ss_pred             chHHHHHHHHCCC-e-eeccH-----HHHHHHHHHHHHH
Q 010101          468 NTRLLREAAEVGA-T-VVSGV-----EMFIRQALGQFRL  499 (518)
Q Consensus       468 ~T~ll~~A~~~G~-~-~i~G~-----~ml~~Qa~~qf~l  499 (518)
                      +..|-...+..++ . +=.|.     -||+.+.+.+.+.
T Consensus       244 DVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~~~  282 (286)
T PRK14184        244 DCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWKE  282 (286)
T ss_pred             CccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHH
Confidence            2444222233343 2 22344     4888877766543

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.85  E-value=0.00024  Score=71.19  Aligned_cols=162  Identities=19%  Similarity=0.276  Sum_probs=105.4

Q ss_pred             HHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCC--
Q 010101          257 NPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDG--  329 (518)
Q Consensus       257 n~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g--  329 (518)
                      -+..+++|++.....++-    +++.+.++.+ .+.++.|+-|-+|+-..    +|+   . +.+.+++--. + -||  
T Consensus        51 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~----i~~---~-~i~~~I~p~K-D-VDGl~  120 (287)
T PRK14173         51 DRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPH----IDF---Q-RVLEAIDPLK-D-VDGFH  120 (287)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH---H-HHHhccCccc-c-ccccC
Confidence            367899999988777763    3567777777 46679999999997532    111   1 1222222211 1 011  


Q ss_pred             -----eEE-Ee----ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeC
Q 010101          330 -----KLV-GY----NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNR  398 (518)
Q Consensus       330 -----~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nR  398 (518)
                           +++ |.    ----.|+++-|+.     .+        .+++||+++|+|.+. .|+.++.-|.+.|+.|+++.+
T Consensus       121 ~~N~g~l~~~~~~~~PcTp~avi~lL~~-----~~--------i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs  187 (287)
T PRK14173        121 PLNVGRLWMGGEALEPCTPAGVVRLLKH-----YG--------IPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHS  187 (287)
T ss_pred             hhhhHHHhcCCCCCCCCCHHHHHHHHHH-----cC--------CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCC
Confidence                 111 11    1123455555443     12        678999999999986 999999999999999999875


Q ss_pred             CHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          399 NYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       399 t~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                      ....                 +.+ ...++||||.|++.   |.    .+..++++++.+|+|+-.++
T Consensus       188 ~T~~-----------------l~~-~~~~ADIvIsAvGk---p~----~i~~~~vk~GavVIDVGin~  230 (287)
T PRK14173        188 KTQD-----------------LPA-VTRRADVLVVAVGR---PH----LITPEMVRPGAVVVDVGINR  230 (287)
T ss_pred             CCCC-----------------HHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEEccCcc
Confidence            4221                 111 23568999988853   22    36788999999999997664

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.82  E-value=0.00038  Score=69.67  Aligned_cols=200  Identities=19%  Similarity=0.224  Sum_probs=121.8

Q ss_pred             HHHHHHHHcCCCceEEecccC----cHHHHHHHh-cCCCCCEEEecccchHHHH--hcccccChhhhhcCceeEEEEecc
Q 010101          255 LHNPAFRHTRFNGIYVPMLVD----DVKEFFRTY-SGTDFAGFSVGIPHKEPAV--ACCDEVHPLAKSIGAVNTIIRRPI  327 (518)
Q Consensus       255 ~hn~~f~~~gl~~~y~~~~~~----~l~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~iGavNTi~~~~~  327 (518)
                      .-.+..+++|++.....++-+    ++...++.+ .++++.|+-|-.|+...+-  ..++.++|. +-+-..+..-    
T Consensus        50 ~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~N----  124 (282)
T PRK14169         50 NKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD-KDVDGFSPVS----  124 (282)
T ss_pred             HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChhh----
Confidence            444788999999877777642    566667666 5778999999999763221  112111111 1111111100    


Q ss_pred             CCeEE-E----eecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEe-CCH
Q 010101          328 DGKLV-G----YNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFN-RNY  400 (518)
Q Consensus       328 ~g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~n-Rt~  400 (518)
                      -|++. |    .----.|++.-|+.     .+        .+++||+++|+|-+. .|+.++.-|...|+.|+++. ||.
T Consensus       125 ~g~l~~~~~~~~PcTp~avi~lL~~-----~~--------i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~  191 (282)
T PRK14169        125 VGRLWANEPTVVASTPYGIMALLDA-----YD--------IDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTR  191 (282)
T ss_pred             hHHHhcCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCC
Confidence            01111 1    01124566665543     12        678999999999986 99999999999999999995 442


Q ss_pred             HHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC-------chHHHH
Q 010101          401 ERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR-------NTRLLR  473 (518)
Q Consensus       401 ~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~-------~T~ll~  473 (518)
                      +    |              .+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++.       +-.+-.
T Consensus       192 ~----l--------------~~-~~~~ADIvI~AvG~---p~----~i~~~~vk~GavVIDvGin~~~~gkl~GDVd~~~  245 (282)
T PRK14169        192 N----L--------------KQ-LTKEADILVVAVGV---PH----FIGADAVKPGAVVIDVGISRGADGKLLGDVDEAA  245 (282)
T ss_pred             C----H--------------HH-HHhhCCEEEEccCC---cC----ccCHHHcCCCcEEEEeeccccCCCCeeecCcHHH
Confidence            2    1              11 23568999988853   22    377889999999999988762       223322


Q ss_pred             HHHHCCC--eeeccH-----HHHHHHHHHHHH
Q 010101          474 EAAEVGA--TVVSGV-----EMFIRQALGQFR  498 (518)
Q Consensus       474 ~A~~~G~--~~i~G~-----~ml~~Qa~~qf~  498 (518)
                      ..+..++  ++=.|.     -||+...+.+.+
T Consensus       246 v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~  277 (282)
T PRK14169        246 VAPIASAITPVPGGVGPMTIASLMAQTVTLAK  277 (282)
T ss_pred             HHhhccEecCCCCCcHHHHHHHHHHHHHHHHH
Confidence            2233333  233463     477777666543

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.82  E-value=0.00034  Score=69.87  Aligned_cols=168  Identities=18%  Similarity=0.233  Sum_probs=105.8

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEeccC
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPID  328 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~  328 (518)
                      -.++.+++|++..-..++-    +++.+.++.+ .+++..|+.|-.|....+  ...++.++|. +-+-..+-+ +   -
T Consensus        52 k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~-n---~  126 (281)
T PRK14183         52 KAKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK-KDVDGFHPY-N---V  126 (281)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch-hcccccChh-h---h
Confidence            3467889999976555543    3566777777 577899999999975221  1111111111 111111110 0   0


Q ss_pred             CeE-EEee----cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          329 GKL-VGYN----TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       329 g~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      |++ .|.+    ---.|++.-|+.     .+        .+++||+++|+|-| -.|+.++.-|.+.|+.|+++......
T Consensus       127 g~l~~g~~~~~PcTp~avi~lL~~-----~~--------i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~  193 (281)
T PRK14183        127 GRLVTGLDGFVPCTPLGVMELLEE-----YE--------IDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKD  193 (281)
T ss_pred             hHHhcCCCCCCCCcHHHHHHHHHH-----cC--------CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcC
Confidence            111 1111    115566665543     12        67899999999998 59999999999999999998743211


Q ss_pred             HHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          403 AKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       403 a~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                         |              .+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++
T Consensus       194 ---l--------------~~-~~~~ADIvV~AvGk---p~----~i~~~~vk~gavvIDvGin~  232 (281)
T PRK14183        194 ---L--------------KA-HTKKADIVIVGVGK---PN----LITEDMVKEGAIVIDIGINR  232 (281)
T ss_pred             ---H--------------HH-HHhhCCEEEEecCc---cc----ccCHHHcCCCcEEEEeeccc
Confidence               1              11 23568999988852   22    37788999999999998765

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.80  E-value=0.00074  Score=67.02  Aligned_cols=217  Identities=18%  Similarity=0.226  Sum_probs=137.8

Q ss_pred             EEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccch-----HHHHhccccc
Q 010101          240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHK-----EPAVACCDEV  309 (518)
Q Consensus       240 ~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d~~  309 (518)
                      .-++|+--+....-.+-.+..++.|+...+..++.    +++...++.+ .++++.|.-|-.|.=     +.++..++- 
T Consensus        35 vilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p-  113 (283)
T COG0190          35 VILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDP-  113 (283)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCc-
Confidence            34566655444444566788999999988777753    3677777777 688999999999963     222222210 


Q ss_pred             ChhhhhcCceeEEEEeccCCeEE-E---e-ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHH
Q 010101          310 HPLAKSIGAVNTIIRRPIDGKLV-G---Y-NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALA  383 (518)
Q Consensus       310 ~~~A~~iGavNTi~~~~~~g~l~-G---~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia  383 (518)
                      +..+.-....|.       |++. |   + -.--.|++..|+..     +        .++.|++++|+|.+. .||.++
T Consensus       114 ~KDVDG~hp~N~-------g~L~~~~~~~~PCTp~gi~~ll~~~-----~--------i~l~Gk~~vVVGrS~iVGkPla  173 (283)
T COG0190         114 EKDVDGFHPYNL-------GKLAQGEPGFLPCTPAGIMTLLEEY-----G--------IDLRGKNVVVVGRSNIVGKPLA  173 (283)
T ss_pred             CCCccccChhHh-------cchhcCCCCCCCCCHHHHHHHHHHh-----C--------CCCCCCEEEEECCCCcCcHHHH
Confidence            000111111111       2222 2   0 12257888877651     2        678999999999997 999999


Q ss_pred             HHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEe
Q 010101          384 FGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAV  463 (518)
Q Consensus       384 ~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~  463 (518)
                      .-|...++.|++++..-..                 +.+ ...++|++|.|+..   |+    .+..++++++.+|+|+=
T Consensus       174 ~lL~~~naTVtvcHs~T~~-----------------l~~-~~k~ADIvv~AvG~---p~----~i~~d~vk~gavVIDVG  228 (283)
T COG0190         174 LLLLNANATVTVCHSRTKD-----------------LAS-ITKNADIVVVAVGK---PH----FIKADMVKPGAVVIDVG  228 (283)
T ss_pred             HHHHhCCCEEEEEcCCCCC-----------------HHH-HhhhCCEEEEecCC---cc----ccccccccCCCEEEecC
Confidence            9999999999999865321                 112 34568999988753   22    35678899999999985


Q ss_pred             eCCC-------chHHHHHHHHCCC-eeec-cHH-----HHHHHHHHHHHHhcC
Q 010101          464 YTPR-------NTRLLREAAEVGA-TVVS-GVE-----MFIRQALGQFRLFTG  502 (518)
Q Consensus       464 Y~P~-------~T~ll~~A~~~G~-~~i~-G~~-----ml~~Qa~~qf~lw~g  502 (518)
                      .+..       +..|-...+..++ .-++ |.+     ||+..-+..++...+
T Consensus       229 inrv~~~kl~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~~  281 (283)
T COG0190         229 INRVNDGKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRG  281 (283)
T ss_pred             CccccCCceEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence            5532       2444333444443 3455 554     888887777765544

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.80  E-value=0.00029  Score=70.82  Aligned_cols=163  Identities=18%  Similarity=0.221  Sum_probs=105.6

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccC--
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPID--  328 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~--  328 (518)
                      -.+..+++|++.....++-    +++.+.++.+ .++...|+.|-.|+..    ++|+   . +.+.+++--. + -|  
T Consensus        53 k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~----~i~~---~-~i~~~I~p~K-D-VDGl  122 (294)
T PRK14187         53 KQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPN----HIDK---N-LIINTIDPEK-D-VDGF  122 (294)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCccc-C-cccC
Confidence            3477899999987776653    2566666666 5778999999999852    2211   1 1111111110 0 01  


Q ss_pred             -----CeE-EEee------cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHCCCeEEE
Q 010101          329 -----GKL-VGYN------TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSRGARVII  395 (518)
Q Consensus       329 -----g~l-~G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i  395 (518)
                           |++ .|.+      ---.|++.-|+.     .+        .+++||+++|+|-+. .|+.++.-|.+.|+.|++
T Consensus       123 ~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~-----~~--------i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~  189 (294)
T PRK14187        123 HNENVGRLFTGQKKNCLIPCTPKGCLYLIKT-----IT--------RNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTT  189 (294)
T ss_pred             ChhhHHHHhCCCCCCCccCcCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCccchHHHHHHHhhCCCEEEE
Confidence                 111 1221      124555555543     12        678999999999986 999999999999999999


Q ss_pred             EeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          396 FNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       396 ~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                      +......                 +.+ ...++||||.|++.   |.    .+..++++++.+|+|+-.++
T Consensus       190 chs~T~~-----------------l~~-~~~~ADIvVsAvGk---p~----~i~~~~ik~gaiVIDVGin~  235 (294)
T PRK14187        190 VHSATRD-----------------LAD-YCSKADILVAAVGI---PN----FVKYSWIKKGAIVIDVGINS  235 (294)
T ss_pred             eCCCCCC-----------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEecccc
Confidence            8864221                 112 23568999988753   22    37788999999999996554

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.79  E-value=0.00076  Score=67.65  Aligned_cols=169  Identities=17%  Similarity=0.247  Sum_probs=107.5

Q ss_pred             HHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHH--hcccccChhhhhcCceeEEEEecc
Q 010101          255 LHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAV--ACCDEVHPLAKSIGAVNTIIRRPI  327 (518)
Q Consensus       255 ~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~iGavNTi~~~~~  327 (518)
                      .-.++++++|++.....++-    +++.+.++.+ .+.++.|+-|-.|.-..+-  ..++.++|. +-+-..+..-    
T Consensus        46 ~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~-KDVDGl~p~n----  120 (287)
T PRK14181         46 MKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD-KDVDGLHPVN----  120 (287)
T ss_pred             HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc-cCcccCChhh----
Confidence            34477899999987777654    2577777777 5778999999999753221  111111111 1111111110    


Q ss_pred             CCeEE-Ee-----ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHC----CCeEEEE
Q 010101          328 DGKLV-GY-----NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSR----GARVIIF  396 (518)
Q Consensus       328 ~g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~----G~~v~i~  396 (518)
                      -|++. |.     ----.|+++-|+.     .+        .+++||+++|+|-+. .||.++.-|.+.    ++.|+++
T Consensus       121 ~g~l~~g~~~~~~PcTp~avi~lL~~-----~~--------i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvc  187 (287)
T PRK14181        121 MGKLLLGETDGFIPCTPAGIIELLKY-----YE--------IPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLL  187 (287)
T ss_pred             HHHHhcCCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEe
Confidence            01111 21     0124566665543     12        678999999999986 999999999988    6799998


Q ss_pred             eCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          397 NRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       397 nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                      ......                 +.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++
T Consensus       188 hs~T~~-----------------l~~-~~~~ADIvV~AvG~---p~----~i~~~~ik~GavVIDvGin~  232 (287)
T PRK14181        188 HSQSEN-----------------LTE-ILKTADIIIAAIGV---PL----FIKEEMIAEKAVIVDVGTSR  232 (287)
T ss_pred             CCCCCC-----------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEecccc
Confidence            753221                 111 23568999988853   22    37889999999999997775

>PRK06046 alanine dehydrogenase; Validated

Probab=97.75  E-value=0.00011  Score=75.64  Aligned_cols=113  Identities=20%  Similarity=0.223  Sum_probs=74.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCc----ccccccccccCCCCccEEEEcCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKS-RGA-RVIIFNRNYERAKALADAVSGE----ALHFEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~-~G~-~v~i~nRt~~ka~~la~~~~~~----~~~~~~l~~~~~~~~divInatp~g~~  440 (518)
                      -+++.|+|+|+.|+..+.++.. .++ +|+|++|+.++++++++++...    ....+++.+ ... +|+|++|||.. .
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~-aDiVv~aTps~-~  205 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEE-ACD-CDILVTTTPSR-K  205 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHH-Hhh-CCEEEEecCCC-C
Confidence            4789999999999999999874 467 8999999999999999887421    111233333 344 89999999863 2


Q ss_pred             CCCCCCCCChhhhcCCCEEEEE-eeCCCchHHHHHHHHCCCeeeccHH
Q 010101          441 PNSDQSPVPKEALKAYELVFDA-VYTPRNTRLLREAAEVGATVVSGVE  487 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di-~Y~P~~T~ll~~A~~~G~~~i~G~~  487 (518)
                      |.     +..++++++..|.-+ .|.|....+-.+.-++.-.+++-.+
T Consensus       206 P~-----~~~~~l~~g~hV~~iGs~~p~~~El~~~~~~~a~vvvD~~~  248 (326)
T PRK06046        206 PV-----VKAEWIKEGTHINAIGADAPGKQELDPEILLRAKVVVDDME  248 (326)
T ss_pred             cE-----ecHHHcCCCCEEEecCCCCCccccCCHHHHhCCcEEECCHH
Confidence            32     556778887765545 3456543333333233334555443

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.71  E-value=5.7e-05  Score=76.85  Aligned_cols=111  Identities=14%  Similarity=0.208  Sum_probs=74.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV  448 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~  448 (518)
                      ++.|||.|-||.+++..|.+.|.+|+++||++++++++.+.......+.+++.+ ....+|+|+-++|.+..   .. .+
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~-~~~~~dvIi~~vp~~~~---~~-v~   76 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQ-RLSAPRVVWVMVPHGIV---DA-VL   76 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHh-hcCCCCEEEEEcCchHH---HH-HH
Confidence            589999999999999999999999999999999999887642212223333332 33567999999886511   11 01


Q ss_pred             C--hhhhcCCCEEEEEeeC-CCchHH-HHHHHHCCCeeec
Q 010101          449 P--KEALKAYELVFDAVYT-PRNTRL-LREAAEVGATVVS  484 (518)
Q Consensus       449 ~--~~~l~~~~~v~Di~Y~-P~~T~l-l~~A~~~G~~~i~  484 (518)
                      .  ...++++.+++|..-. |..|.- .++.+++|+++++
T Consensus        77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd  116 (298)
T TIGR00872        77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD  116 (298)
T ss_pred             HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence            1  1135677899998665 444432 3345567766443

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.00047  Score=69.30  Aligned_cols=168  Identities=17%  Similarity=0.222  Sum_probs=104.3

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEeccC
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPID  328 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~~  328 (518)
                      -.+.++++|++.....++-    +++.+.++.+ .++.+.|+-|-.|+...+  ...++.++|. +-+-..+-+    +-
T Consensus        52 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~----N~  126 (293)
T PRK14185         52 KVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR-KDVDGFHPI----NV  126 (293)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc-cCcCCCCHh----hH
Confidence            3478899999987666553    2566666666 577899999999975321  1111111111 000000000    00


Q ss_pred             CeEE-Ee----ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHC----CCeEEEEeC
Q 010101          329 GKLV-GY----NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSR----GARVIIFNR  398 (518)
Q Consensus       329 g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~----G~~v~i~nR  398 (518)
                      |++. |.    ----.|+++-|+.     .+        .+++||+++|+|-+. .|+.++.-|.+.    ++.|+++..
T Consensus       127 g~l~~~~~~~~PcTp~av~~lL~~-----~~--------i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs  193 (293)
T PRK14185        127 GRMSIGLPCFVSATPNGILELLKR-----YH--------IETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHS  193 (293)
T ss_pred             HHHhCCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecC
Confidence            1111 11    1124566665543     12        678999999999986 999999999988    579999864


Q ss_pred             CHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          399 NYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       399 t~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                      ....                 +.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++
T Consensus       194 ~T~n-----------------l~~-~~~~ADIvIsAvGk---p~----~i~~~~vk~gavVIDvGin~  236 (293)
T PRK14185        194 RSKN-----------------LKK-ECLEADIIIAALGQ---PE----FVKADMVKEGAVVIDVGTTR  236 (293)
T ss_pred             CCCC-----------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEecCcc
Confidence            3211                 111 23568999988853   22    37788999999999998765

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.00055  Score=68.60  Aligned_cols=194  Identities=14%  Similarity=0.248  Sum_probs=120.2

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCC-
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDG-  329 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g-  329 (518)
                      --+..+++|++.....++-    +++.+.++.+ .++++.|+-|-+|+-.    ++|   +. +.+.+++--. + -|| 
T Consensus        53 k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~----~id---~~-~i~~~I~p~K-D-VDGl  122 (284)
T PRK14193         53 KHRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPK----HLD---EN-AVLERIDPAK-D-ADGL  122 (284)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCC---HH-HHHhcCCccc-C-ccCC
Confidence            3467889999987766653    3566666666 5778999999999752    111   11 1222222211 0 011 


Q ss_pred             ------eE-EEe----ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHH--CCCeEEE
Q 010101          330 ------KL-VGY----NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKS--RGARVII  395 (518)
Q Consensus       330 ------~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~--~G~~v~i  395 (518)
                            ++ .|.    -.--.|++.-|+.     .+        .+++||+++|+|.+. .|+.++.-|.+  .|+.|++
T Consensus       123 ~~~n~g~l~~~~~~~~PcTp~av~~ll~~-----~~--------i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtv  189 (284)
T PRK14193        123 HPTNLGRLVLNEPAPLPCTPRGIVHLLRR-----YD--------VELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTL  189 (284)
T ss_pred             ChhhhhHHhCCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEE
Confidence                  11 111    1224566665543     12        678999999999986 99999999988  6889999


Q ss_pred             EeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC-------c
Q 010101          396 FNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR-------N  468 (518)
Q Consensus       396 ~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~-------~  468 (518)
                      +......                 +.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++.       +
T Consensus       190 chs~T~~-----------------l~~-~~k~ADIvV~AvGk---p~----~i~~~~ik~GavVIDvGin~~~~gkl~GD  244 (284)
T PRK14193        190 CHTGTRD-----------------LAA-HTRRADIIVAAAGV---AH----LVTADMVKPGAAVLDVGVSRAGDGKLVGD  244 (284)
T ss_pred             eCCCCCC-----------------HHH-HHHhCCEEEEecCC---cC----ccCHHHcCCCCEEEEccccccCCCcEEee
Confidence            9864221                 112 23568999988853   22    377889999999999987762       1


Q ss_pred             hHHHHHHHH-CC-Ce-eeccHH-----HHHHHHHHHHHH
Q 010101          469 TRLLREAAE-VG-AT-VVSGVE-----MFIRQALGQFRL  499 (518)
Q Consensus       469 T~ll~~A~~-~G-~~-~i~G~~-----ml~~Qa~~qf~l  499 (518)
                      -.  ..+++ .+ +. +=.|.+     ||+.+.+.+.+.
T Consensus       245 vd--~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~  281 (284)
T PRK14193        245 VH--PDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAER  281 (284)
T ss_pred             cC--HhHHhhCCEEeCCCCChhHHHHHHHHHHHHHHHHH
Confidence            12  22332 23 22 334544     777777766553

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.68  E-value=4.5e-05  Score=76.60  Aligned_cols=117  Identities=21%  Similarity=0.129  Sum_probs=80.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-HhcCcccccccc-cccCCCCccEEEEcCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD-AVSGEALHFEYL-HEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~-~~~~~~~~~~~l-~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      ++++|+|.|.+|++++..|.+.|..+.|++++.+++...+. +++.......+. .. ...++|+||-|+|+......-.
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~-~~~~aD~VivavPi~~~~~~l~   82 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAE-AAAEADLVIVAVPIEATEEVLK   82 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhh-hcccCCEEEEeccHHHHHHHHH
Confidence            68999999999999999999999988899988877655433 355322111111 11 3456899999999864322111


Q ss_pred             CCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCC---eeeccHHHH
Q 010101          446 SPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGA---TVVSGVEMF  489 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~---~~i~G~~ml  489 (518)
                      . +.+ .++++.+|.|+...  .++.++.+++.+-   ++++|-.|+
T Consensus        83 ~-l~~-~l~~g~iv~Dv~S~--K~~v~~a~~~~~~~~~~~vg~HPM~  125 (279)
T COG0287          83 E-LAP-HLKKGAIVTDVGSV--KSSVVEAMEKYLPGDVRFVGGHPMF  125 (279)
T ss_pred             H-hcc-cCCCCCEEEecccc--cHHHHHHHHHhccCCCeeEecCCCC
Confidence            1 111 36788999999776  6777788877653   588877776

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.65  E-value=0.0001  Score=69.13  Aligned_cols=110  Identities=23%  Similarity=0.309  Sum_probs=70.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|+|.|.+|++++..|...|++|+.++|+...... ....+....++++    ...++|+|+++.|..  +.
T Consensus        32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~~~~~~~~l~e----ll~~aDiv~~~~plt--~~  104 (178)
T PF02826_consen   32 RELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEG-ADEFGVEYVSLDE----LLAQADIVSLHLPLT--PE  104 (178)
T ss_dssp             S-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHH-HHHTTEEESSHHH----HHHH-SEEEE-SSSS--TT
T ss_pred             cccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhh-cccccceeeehhh----hcchhhhhhhhhccc--cc
Confidence            5688999999999999999999999999999999999876542 2222222233333    345689999999964  22


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeCCC-chHHHHHHHHCCC
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYTPR-NTRLLREAAEVGA  480 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~  480 (518)
                       ..-.+..+.   ++++.+++.+.-.+. +..=+.+|-+.|.
T Consensus       105 -T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~  145 (178)
T PF02826_consen  105 -TRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGK  145 (178)
T ss_dssp             -TTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTS
T ss_pred             -cceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhcc
Confidence             223466554   466778877665543 2333344444444

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.65  E-value=0.0011  Score=66.90  Aligned_cols=163  Identities=17%  Similarity=0.216  Sum_probs=106.2

Q ss_pred             HHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCC-
Q 010101          256 HNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDG-  329 (518)
Q Consensus       256 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g-  329 (518)
                      -.+.++++|++.....++-    +++.+.++.+ .++++.|+.|-.|...    ++|   +.. .+.+++--. + -|| 
T Consensus        52 k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~----~id---~~~-i~~~I~p~K-D-VDGl  121 (295)
T PRK14174         52 KAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPK----QID---EFA-VTLAIDPAK-D-VDGF  121 (295)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCC---HHH-HHhcCCccc-c-cccc
Confidence            3477899999988777764    2577777777 5778999999999752    222   111 111222211 0 011 


Q ss_pred             ------eE-EEe--e----cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHH----CCC
Q 010101          330 ------KL-VGY--N----TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKS----RGA  391 (518)
Q Consensus       330 ------~l-~G~--N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~----~G~  391 (518)
                            ++ .|+  +    ---.|++.-|+.     .+        .+++||+++|+|.+. .||.++.-|.+    .|+
T Consensus       122 ~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~-----y~--------i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~a  188 (295)
T PRK14174        122 HPENLGRLVMGHLDKCFVSCTPYGILELLGR-----YN--------IETKGKHCVVVGRSNIVGKPMANLMLQKLKESNC  188 (295)
T ss_pred             ChhhHHHHhcCCCCCCcCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCCcchHHHHHHHHhccccCCC
Confidence                  11 121  1    123455555443     12        678999999999986 99999999887    678


Q ss_pred             eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          392 RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       392 ~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                      .|+++..+....++                  ...++|+||.|++.   |    ..+..++++++.+|+|+-.+.
T Consensus       189 tVt~~hs~t~~l~~------------------~~~~ADIvI~Avg~---~----~li~~~~vk~GavVIDVgi~~  238 (295)
T PRK14174        189 TVTICHSATKDIPS------------------YTRQADILIAAIGK---A----RFITADMVKPGAVVIDVGINR  238 (295)
T ss_pred             EEEEEeCCchhHHH------------------HHHhCCEEEEecCc---c----CccCHHHcCCCCEEEEeeccc
Confidence            99998876433221                  23468999988842   2    237788999999999997765

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.65  E-value=0.00071  Score=68.22  Aligned_cols=206  Identities=18%  Similarity=0.237  Sum_probs=124.4

Q ss_pred             HHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChhhhhcCceeEEEEecc
Q 010101          255 LHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPLAKSIGAVNTIIRRPI  327 (518)
Q Consensus       255 ~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~iGavNTi~~~~~  327 (518)
                      .-.+.++++|++.....++-    +++...++.+ .++++.|+.|-+|+...+  ...++.++|. |-+-..+..-    
T Consensus        51 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----  125 (297)
T PRK14167         51 MKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA-KDVDGFHPEN----  125 (297)
T ss_pred             HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-cCcccCChhh----
Confidence            33477899999988777764    2577777777 577899999999975322  1122111111 1111111110    


Q ss_pred             CCeE-EEee----cCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHHC----CCeEEEEe
Q 010101          328 DGKL-VGYN----TDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKSR----GARVIIFN  397 (518)
Q Consensus       328 ~g~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~~----G~~v~i~n  397 (518)
                      -|++ .|.+    ---.|++.-|+.     .+        .+++||+++|+|-+. .||.++.-|.+.    ++.|+++.
T Consensus       126 ~g~l~~g~~~~~PcTp~avi~lL~~-----~~--------i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvch  192 (297)
T PRK14167        126 VGRLVAGDARFKPCTPHGIQKLLAA-----AG--------VDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCH  192 (297)
T ss_pred             hHHHhCCCCCCCCCCHHHHHHHHHH-----hC--------CCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeC
Confidence            0111 1111    124556665543     12        678999999999986 999999999887    67999986


Q ss_pred             CCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCC-c-h------
Q 010101          398 RNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR-N-T------  469 (518)
Q Consensus       398 Rt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~-~-T------  469 (518)
                      .....                 +.+ ...++||||.|+..   |.    .+..++++++.+|+|+-.++. . |      
T Consensus       193 s~T~~-----------------l~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gaiVIDvGin~~~~~~~~g~kl  247 (297)
T PRK14167        193 SRTDD-----------------LAA-KTRRADIVVAAAGV---PE----LIDGSMLSEGATVIDVGINRVDADTEKGYEL  247 (297)
T ss_pred             CCCCC-----------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEccccccCcccccCCce
Confidence            43221                 111 23568999988753   22    477889999999999987652 1 1      


Q ss_pred             ----HHHHHHHH-CCC--eeeccHH-----HHHHHHHHHHHHhcCCC
Q 010101          470 ----RLLREAAE-VGA--TVVSGVE-----MFIRQALGQFRLFTGGL  504 (518)
Q Consensus       470 ----~ll~~A~~-~G~--~~i~G~~-----ml~~Qa~~qf~lw~g~~  504 (518)
                          .| +.+++ .++  ++-.|.+     ||+.+.+.+++.-.+.+
T Consensus       248 ~GDVd~-e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~~  293 (297)
T PRK14167        248 VGDVEF-ESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEGVD  293 (297)
T ss_pred             eecCcH-HHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcCCC
Confidence                12 22322 232  2334544     88888888776655443

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.63  E-value=0.00023  Score=70.64  Aligned_cols=78  Identities=23%  Similarity=0.283  Sum_probs=60.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc--------cccccccc------c---CCC
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA--------LHFEYLHE------F---FPE  426 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~--------~~~~~l~~------~---~~~  426 (518)
                      ..+++++|.|| +|.|++++..|++.|++|.++.|+.+|.++|++++...+        +++.+.++      .   ...
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~   83 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG   83 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence            45789999999 799999999999999999999999999999999986432        12221111      0   113


Q ss_pred             CccEEEEcCCCCCCCC
Q 010101          427 KGMILANASAIGMEPN  442 (518)
Q Consensus       427 ~~divInatp~g~~~~  442 (518)
                      ..|++||+...|....
T Consensus        84 ~IdvLVNNAG~g~~g~   99 (265)
T COG0300          84 PIDVLVNNAGFGTFGP   99 (265)
T ss_pred             cccEEEECCCcCCccc
Confidence            5799999998887653

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.61  E-value=0.00092  Score=68.52  Aligned_cols=95  Identities=12%  Similarity=0.107  Sum_probs=68.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcCc---ccccccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSR-GA-RVIIFNRNYERAKALADAVSGE---ALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~-G~-~v~i~nRt~~ka~~la~~~~~~---~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      -+++.|+|+|..|+.-+.++... .. +|+|+||++++++++++.+...   ....++.++ ...++|||+-||+.. .|
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~-av~~ADIV~taT~s~-~P  205 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAE-VAHAANLIVTTTPSR-EP  205 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHH-HhcCCCEEEEecCCC-Cc
Confidence            47899999999999999988754 45 8999999999999998776422   111233334 567899999999754 23


Q ss_pred             CCCCCCCChhhhcCCCEEEEE-eeCCCc
Q 010101          442 NSDQSPVPKEALKAYELVFDA-VYTPRN  468 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di-~Y~P~~  468 (518)
                      .     +..++++++..|.=+ .|.|..
T Consensus       206 ~-----~~~~~l~~G~hi~~iGs~~p~~  228 (315)
T PRK06823        206 L-----LQAEDIQPGTHITAVGADSPGK  228 (315)
T ss_pred             e-----eCHHHcCCCcEEEecCCCCccc
Confidence            2     566788887665444 344543

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=97.61  E-value=0.00014  Score=72.35  Aligned_cols=113  Identities=14%  Similarity=0.221  Sum_probs=74.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      ..+++-+||-|-||.+++.+|.+.|++|+|+||+.++.+.+.+.-....-+..++    .+.+|+||-..|-  ..+...
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeV----ae~sDvvitmv~~--~~~v~~  107 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEV----AEDSDVVITMVPN--PKDVKD  107 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHH----HhhcCEEEEEcCC--hHhhHH
Confidence            3578999999999999999999999999999999999999876532222222232    3468999955542  221111


Q ss_pred             CCCChh-h---hcCCCEE-EEEeeC-CC-chHHHHHHHHCCCeeec
Q 010101          446 SPVPKE-A---LKAYELV-FDAVYT-PR-NTRLLREAAEVGATVVS  484 (518)
Q Consensus       446 ~~~~~~-~---l~~~~~v-~Di~Y~-P~-~T~ll~~A~~~G~~~i~  484 (518)
                      ..+... .   +.+.... +|+... |. .+.+-++++.+|++.++
T Consensus       108 v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vD  153 (327)
T KOG0409|consen  108 VLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVD  153 (327)
T ss_pred             HhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEe
Confidence            111111 1   2344444 799886 44 35566677778887654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.60  E-value=0.00016  Score=73.83  Aligned_cols=72  Identities=18%  Similarity=0.294  Sum_probs=55.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc--------cccccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA--------LHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~--------~~~~~l~~~~~~~~divInatp~  437 (518)
                      +++.|+|+|++|++++++|+..|.  +|++++|+.++++.++.++....        +...+.+  ...++|+||+|++.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~--~l~~aDIVIitag~   78 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS--DCKDADIVVITAGA   78 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH--HhCCCCEEEEccCC
Confidence            379999999999999999999995  89999999999999988773210        1111111  34679999999976


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      .-.|
T Consensus        79 ~~~~   82 (306)
T cd05291          79 PQKP   82 (306)
T ss_pred             CCCC
Confidence            5444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.57  E-value=0.00047  Score=74.76  Aligned_cols=48  Identities=21%  Similarity=0.283  Sum_probs=40.2

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+.+++++|+|.||+|++++..|.+.|++|++++|+..+..++.+.+|
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g   59 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTG   59 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcC
Confidence            467899999999999999999999999999999998766554444433

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.56  E-value=0.00068  Score=61.03  Aligned_cols=79  Identities=22%  Similarity=0.222  Sum_probs=62.1

Q ss_pred             cccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .+++||+++|+|-+. .|+.++..|.+.|+.|++++++-...+                 + ...++|+||.+|+..  +
T Consensus        24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-----------------~-~v~~ADIVvsAtg~~--~   83 (140)
T cd05212          24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-----------------S-KVHDADVVVVGSPKP--E   83 (140)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-----------------H-HHhhCCEEEEecCCC--C
Confidence            678999999999976 999999999999999999996532211                 1 345689999998642  2


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                           .+..++++++.+|+|+-.+.
T Consensus        84 -----~i~~~~ikpGa~Vidvg~~~  103 (140)
T cd05212          84 -----KVPTEWIKPGATVINCSPTK  103 (140)
T ss_pred             -----ccCHHHcCCCCEEEEcCCCc
Confidence                 37889999999999876554

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.55  E-value=0.00037  Score=71.85  Aligned_cols=94  Identities=15%  Similarity=0.097  Sum_probs=66.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcC---cccccccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSR-GA-RVIIFNRNYERAKALADAVSG---EALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~-G~-~v~i~nRt~~ka~~la~~~~~---~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .+++.|||+|.+|++-+.++... .. +|+|+||+.++++++++++..   ......+..+ ...++|+||-|||.. .|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~e-av~~aDiVitaT~s~-~P  205 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPRE-AVEGCDILVTTTPSR-KP  205 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHH-HhccCCEEEEecCCC-Cc
Confidence            47899999999999988777643 45 899999999999999887642   1112233333 457899999999753 23


Q ss_pred             CCCCCCCChhhhcCCCEEEEE-eeCCC
Q 010101          442 NSDQSPVPKEALKAYELVFDA-VYTPR  467 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di-~Y~P~  467 (518)
                      .     +..++++++..|.=+ .|.|.
T Consensus       206 ~-----~~~~~l~~g~~v~~vGs~~p~  227 (325)
T TIGR02371       206 V-----VKADWVSEGTHINAIGADAPG  227 (325)
T ss_pred             E-----ecHHHcCCCCEEEecCCCCcc
Confidence            2     456788887766555 34454

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.55  E-value=0.00051  Score=73.40  Aligned_cols=91  Identities=24%  Similarity=0.222  Sum_probs=67.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.||+++|+|.|.+|++++..|...|++|+++++++.++.... ..+....++++    .+..+|+||.+|.  ... 
T Consensus       250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-~~G~~~~~lee----ll~~ADIVI~atG--t~~-  321 (476)
T PTZ00075        250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAA-MEGYQVVTLED----VVETADIFVTATG--NKD-  321 (476)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-hcCceeccHHH----HHhcCCEEEECCC--ccc-
Confidence            578999999999999999999999999999999999988764432 23544444443    3457899998873  211 


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeC
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYT  465 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~  465 (518)
                          .+..+.   ++++.+++++.-.
T Consensus       322 ----iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        322 ----IITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             ----ccCHHHHhccCCCcEEEEcCCC
Confidence                244433   4778888888665

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.55  E-value=0.00015  Score=73.93  Aligned_cols=111  Identities=21%  Similarity=0.205  Sum_probs=74.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-ccccccccCCCCccEEEEcCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-HFEYLHEFFPEKGMILANASAIGMEPNSDQSP  447 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-~~~~l~~~~~~~~divInatp~g~~~~~~~~~  447 (518)
                      ++.|||.|-||.+++..|.+.|.+|+++||++++++++.+ .+.... +.+++.+ ...++|+||.+.|.+..  ... .
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-~g~~~~~~~~e~~~-~~~~~dvvi~~v~~~~~--~~~-v   76 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-EGATGADSLEELVA-KLPAPRVVWLMVPAGEI--TDA-T   76 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCeecCCHHHHHh-hcCCCCEEEEEecCCcH--HHH-H
Confidence            5899999999999999999999999999999999988865 343221 2333222 12246899988875411  000 0


Q ss_pred             CC--hhhhcCCCEEEEEeeC-CCchH-HHHHHHHCCCeeec
Q 010101          448 VP--KEALKAYELVFDAVYT-PRNTR-LLREAAEVGATVVS  484 (518)
Q Consensus       448 ~~--~~~l~~~~~v~Di~Y~-P~~T~-ll~~A~~~G~~~i~  484 (518)
                      +.  ...++++.+++|+.-. |..|. +.+.++++|+.+++
T Consensus        77 ~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d  117 (301)
T PRK09599         77 IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD  117 (301)
T ss_pred             HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe
Confidence            11  1235667899999654 55443 55677788887654

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.54  E-value=0.00011  Score=75.09  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=75.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      .+++.|||+|.+|.+++..|.+.|.  +|++++|++++.+.+. ..+.......+..+ ...++|+||.|+|.+.....-
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-~~g~~~~~~~~~~~-~~~~aDvViiavp~~~~~~v~   83 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-ELGLGDRVTTSAAE-AVKGADLVILCVPVGASGAVA   83 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hCCCCceecCCHHH-HhcCCCEEEECCCHHHHHHHH
Confidence            3689999999999999999999885  8999999998776543 34421111122222 346789999999975421100


Q ss_pred             CCCCChhhhcCCCEEEEEeeCCCchHHHHHHHH---CCCeeeccHHHH
Q 010101          445 QSPVPKEALKAYELVFDAVYTPRNTRLLREAAE---VGATVVSGVEMF  489 (518)
Q Consensus       445 ~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~---~G~~~i~G~~ml  489 (518)
                      . .+ ...++++.+|+|+...  ....++...+   .+++++++..|.
T Consensus        84 ~-~l-~~~l~~~~iv~dvgs~--k~~~~~~~~~~~~~~~~~v~~hPm~  127 (307)
T PRK07502         84 A-EI-APHLKPGAIVTDVGSV--KASVIAAMAPHLPEGVHFIPGHPLA  127 (307)
T ss_pred             H-HH-HhhCCCCCEEEeCccc--hHHHHHHHHHhCCCCCeEEeCCCCC
Confidence            0 01 1235667889998554  2344454433   356777776665

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.53  E-value=0.0002  Score=72.76  Aligned_cols=107  Identities=17%  Similarity=0.186  Sum_probs=72.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV  448 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~  448 (518)
                      ++.|||.|-||.+++..|.+.|.+|+++||++++++++.+. +...  ..+..+ ...++|+||-++|....  ......
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~-g~~~--~~s~~~-~~~~aDvVi~~vp~~~~--~~~vl~   76 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDK-GATP--AASPAQ-AAAGAEFVITMLPNGDL--VRSVLF   76 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc-CCcc--cCCHHH-HHhcCCEEEEecCCHHH--HHHHHc
Confidence            68999999999999999999999999999999999888654 2211  111122 24568999999885421  000000


Q ss_pred             -C---hhhhcCCCEEEEEeeCCCc--hHHHHHHHHCCCe
Q 010101          449 -P---KEALKAYELVFDAVYTPRN--TRLLREAAEVGAT  481 (518)
Q Consensus       449 -~---~~~l~~~~~v~Di~Y~P~~--T~ll~~A~~~G~~  481 (518)
                       .   ...++++.+++|+...+..  ..+.+..+++|+.
T Consensus        77 ~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~  115 (296)
T PRK15461         77 GENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS  115 (296)
T ss_pred             CcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence             0   1124567899999877443  3445666777755

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.53  E-value=0.00014  Score=73.63  Aligned_cols=111  Identities=14%  Similarity=0.149  Sum_probs=74.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV  448 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~  448 (518)
                      ++.|||.|-+|.+++..|.+.|.+|+++||++++++.+.+. +...  ..+..+ ...++|+||.+.|...  ......+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~-~~~~aDivi~~vp~~~--~~~~v~~   74 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAA-GAVT--AETARQ-VTEQADVIFTMVPDSP--QVEEVAF   74 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCcc--cCCHHH-HHhcCCEEEEecCCHH--HHHHHHc
Confidence            37899999999999999999999999999999998887653 3211  112222 3456899999987531  1111101


Q ss_pred             C-h---hhhcCCCEEEEEeeCCCch--HHHHHHHHCCCeeecc
Q 010101          449 P-K---EALKAYELVFDAVYTPRNT--RLLREAAEVGATVVSG  485 (518)
Q Consensus       449 ~-~---~~l~~~~~v~Di~Y~P~~T--~ll~~A~~~G~~~i~G  485 (518)
                      . .   ..+.++.+++|+...+..+  .+.+..+++|..++++
T Consensus        75 ~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~  117 (291)
T TIGR01505        75 GENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDA  117 (291)
T ss_pred             CcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEec
Confidence            1 1   1235678899987765432  4666777788776663

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PLN02928 oxidoreductase family protein

Probab=97.52  E-value=0.00023  Score=73.99  Aligned_cols=74  Identities=20%  Similarity=0.297  Sum_probs=51.4

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH--------HHhcCcccccccccccCCCCccEEEEcC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALA--------DAVSGEALHFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la--------~~~~~~~~~~~~l~~~~~~~~divInat  435 (518)
                      .+.||++.|+|.|.+|+.++..|...|++|+.++|+..+.....        +.+........++.+ .+.++|+|++++
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e-ll~~aDiVvl~l  234 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYE-FAGEADIVVLCC  234 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHH-HHhhCCEEEECC
Confidence            47799999999999999999999999999999999843321110        000001112334444 456789999998


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      |..
T Consensus       235 Plt  237 (347)
T PLN02928        235 TLT  237 (347)
T ss_pred             CCC
Confidence            853

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.50  E-value=0.00015  Score=69.46  Aligned_cols=70  Identities=16%  Similarity=0.311  Sum_probs=52.5

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcCc--cccc-----
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN-------------------YERAKALADAVSGE--ALHF-----  417 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt-------------------~~ka~~la~~~~~~--~~~~-----  417 (518)
                      +.+++|+|+|+||.|..++..|+..|+ ++++++++                   ..|++.+++.+..-  .+.+     
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            567899999999999999999999999 99999988                   46777777766421  1111     


Q ss_pred             ----ccccccCCCCccEEEEcC
Q 010101          418 ----EYLHEFFPEKGMILANAS  435 (518)
Q Consensus       418 ----~~l~~~~~~~~divInat  435 (518)
                          +++.+ ...++|+||+|+
T Consensus        99 ~i~~~~~~~-~~~~~D~Vi~~~  119 (202)
T TIGR02356        99 RVTAENLEL-LINNVDLVLDCT  119 (202)
T ss_pred             cCCHHHHHH-HHhCCCEEEECC
Confidence                11222 346789999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.49  E-value=0.00026  Score=67.90  Aligned_cols=71  Identities=14%  Similarity=0.216  Sum_probs=51.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCcccccc--cccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE-RAKALADAVSGEALHFE--YLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~-ka~~la~~~~~~~~~~~--~l~~~~~~~~divInatp  436 (518)
                      .+++|++++|+|+|.+|...+..|.+.|++|+|++++.. ..+++++...   +.+.  .+....+.++|+||.||.
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~---i~~~~~~~~~~~l~~adlViaaT~   79 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGK---IRWKQKEFEPSDIVDAFLVIAATN   79 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCC---EEEEecCCChhhcCCceEEEEcCC
Confidence            467899999999999999999999999999999998763 3455554311   1221  111113567899998885

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.47  E-value=0.00019  Score=73.13  Aligned_cols=111  Identities=21%  Similarity=0.200  Sum_probs=71.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNSDQSP  447 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~~~~~~  447 (518)
                      ++.|||.|-+|.+++..|.+.|.+|+++||++++++++.+ .+... .+.+++.+ ...++|+||-++|..-  .... .
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-~g~~~~~s~~~~~~-~~~~advVi~~vp~~~--~~~~-v   76 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK-LGITARHSLEELVS-KLEAPRTIWVMVPAGE--VTES-V   76 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-CCCeecCCHHHHHH-hCCCCCEEEEEecCch--HHHH-H
Confidence            5889999999999999999999999999999999988754 34322 12333221 1223689998888541  0000 0


Q ss_pred             CCh--hhhcCCCEEEEEeeC-CCc-hHHHHHHHHCCCeeec
Q 010101          448 VPK--EALKAYELVFDAVYT-PRN-TRLLREAAEVGATVVS  484 (518)
Q Consensus       448 ~~~--~~l~~~~~v~Di~Y~-P~~-T~ll~~A~~~G~~~i~  484 (518)
                      +..  ..++++.+++|+... |.. -.+.++++++|+.+++
T Consensus        77 ~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd  117 (299)
T PRK12490         77 IKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD  117 (299)
T ss_pred             HHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence            111  124667899999654 543 3344555667776554

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.46  E-value=0.00017  Score=65.94  Aligned_cols=69  Identities=22%  Similarity=0.208  Sum_probs=52.7

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      +++|++.|||.|.-|++-+..|.+.|++|.|..|..++..+.|+.-|.+..++++    ...++|+|+..+|-
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~e----Av~~aDvV~~L~PD   70 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAE----AVKKADVVMLLLPD   70 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHH----HHHC-SEEEE-S-H
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHH----HHhhCCEEEEeCCh
Confidence            4689999999999999999999999999999999998888888888776666554    34568999998874

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.45  E-value=0.0011  Score=71.87  Aligned_cols=98  Identities=29%  Similarity=0.309  Sum_probs=61.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCcccccc--cccccCCCCccEEEEcCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY-ERAKALADAVSGEALHFE--YLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~-~ka~~la~~~~~~~~~~~--~l~~~~~~~~divInatp~g~  439 (518)
                      ..+++++|+|+|+|++|.++|..|.+.|++|+++++.. +....+.+.+....+.+.  +-.. ....+|+||-++  | 
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~--G-   87 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSP--G-   87 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECC--C-
Confidence            45678999999999999999999999999999999654 333333333311111110  0000 001123333111  1 


Q ss_pred             CCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHH
Q 010101          440 EPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       440 ~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                                               .|..+++++.|+++|+++++..+.+
T Consensus        88 -------------------------i~~~~~~~~~a~~~gi~v~~~~e~~  112 (480)
T PRK01438         88 -------------------------WRPDAPLLAAAADAGIPVWGEVELA  112 (480)
T ss_pred             -------------------------cCCCCHHHHHHHHCCCeecchHHHH
Confidence                                     1345788899999999999888865

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.44  E-value=0.00037  Score=73.91  Aligned_cols=91  Identities=26%  Similarity=0.247  Sum_probs=63.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|++++|+|+|.+|+.++..|...|++|+++++++.++...+. .+....++++    ....+|++|.+|..  .. 
T Consensus       208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-~G~~v~~l~e----al~~aDVVI~aTG~--~~-  279 (425)
T PRK05476        208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-DGFRVMTMEE----AAELGDIFVTATGN--KD-  279 (425)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-cCCEecCHHH----HHhCCCEEEECCCC--HH-
Confidence            3568999999999999999999999999999999999988754433 3444333333    34578999998842  11 


Q ss_pred             CCCCCCCh---hhhcCCCEEEEEeeC
Q 010101          443 SDQSPVPK---EALKAYELVFDAVYT  465 (518)
Q Consensus       443 ~~~~~~~~---~~l~~~~~v~Di~Y~  465 (518)
                          .+..   ..++++.+++.+-..
T Consensus       280 ----vI~~~~~~~mK~GailiNvG~~  301 (425)
T PRK05476        280 ----VITAEHMEAMKDGAILANIGHF  301 (425)
T ss_pred             ----HHHHHHHhcCCCCCEEEEcCCC
Confidence                1222   234566666665443

>PRK08328 hypothetical protein; Provisional

Probab=97.44  E-value=0.00022  Score=69.88  Aligned_cols=112  Identities=21%  Similarity=0.289  Sum_probs=65.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCc--cccc--------ccccccCCCCccEEEE
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGE--ALHF--------EYLHEFFPEKGMILAN  433 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~--~~~~--------~~l~~~~~~~~divIn  433 (518)
                      +.+++|+|+|+||.|..++..|+..|+ +++|++.+.-....|-.++-..  .+.-        +.+..   -+.++.|+
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~---~np~v~v~  101 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLER---FNSDIKIE  101 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHH---hCCCCEEE
Confidence            567899999999999999999999999 9999998765544443222100  0000        00111   12455565


Q ss_pred             cCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHH--HHHCCCeeecc
Q 010101          434 ASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLRE--AAEVGATVVSG  485 (518)
Q Consensus       434 atp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~--A~~~G~~~i~G  485 (518)
                      +.+ ++..   +.. ..+.+++..+|+|.++++ .|+++-.  |++.|++++.|
T Consensus       102 ~~~-~~~~---~~~-~~~~l~~~D~Vid~~d~~-~~r~~l~~~~~~~~ip~i~g  149 (231)
T PRK08328        102 TFV-GRLS---EEN-IDEVLKGVDVIVDCLDNF-ETRYLLDDYAHKKGIPLVHG  149 (231)
T ss_pred             EEe-ccCC---HHH-HHHHHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence            532 2211   101 122455666777777775 3444433  66777766554

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.44  E-value=0.00033  Score=72.37  Aligned_cols=70  Identities=21%  Similarity=0.314  Sum_probs=51.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ..+.||++.|+|.|.+|++++..|...|++|.+++|+.+...  ...++....   ++.+ ...++|+|+.++|..
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~--~~~~~~~~~---~l~e-ll~~aDiV~l~lP~t  215 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA--EKELGAEYR---PLEE-LLRESDFVSLHVPLT  215 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh--HHHcCCEec---CHHH-HHhhCCEEEEeCCCC
Confidence            357899999999999999999999999999999999865432  233332222   3333 345689998888853

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.44  E-value=0.00033  Score=71.82  Aligned_cols=96  Identities=23%  Similarity=0.235  Sum_probs=59.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCc---ccccccccccCCCCccEEEEcCCCCCC-
Q 010101          367 GKIFVLVGAGGAGRALAFGAKS-RGA-RVIIFNRNYERAKALADAVSGE---ALHFEYLHEFFPEKGMILANASAIGME-  440 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~-~G~-~v~i~nRt~~ka~~la~~~~~~---~~~~~~l~~~~~~~~divInatp~g~~-  440 (518)
                      .+++.|+|+|.-|+.-+.++.. .+. +|.|++|++++++++++.+...   ....++.++ ...++|+||-||+.... 
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~-av~~aDii~taT~s~~~~  206 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEE-AVRGADIIVTATPSTTPA  206 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHH-HHTTSSEEEE----SSEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhh-hcccCCEEEEccCCCCCC
Confidence            3689999999999999998875 567 9999999999999999988751   112234444 56789999999986531 


Q ss_pred             CCCCCCCCChhhhcCCCEEEEEe-eCCCc
Q 010101          441 PNSDQSPVPKEALKAYELVFDAV-YTPRN  468 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di~-Y~P~~  468 (518)
                      |     .+..++++++..+.-+- |.|..
T Consensus       207 P-----~~~~~~l~~g~hi~~iGs~~~~~  230 (313)
T PF02423_consen  207 P-----VFDAEWLKPGTHINAIGSYTPGM  230 (313)
T ss_dssp             E-----SB-GGGS-TT-EEEE-S-SSTTB
T ss_pred             c-----cccHHHcCCCcEEEEecCCCCch
Confidence            2     25677888887666553 34654

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.43  E-value=0.00029  Score=71.45  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=74.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSP  447 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~  447 (518)
                      .++.|||.|.+|.+++..|.+.|.+|+++||+.++.+++.+. +...  ..+..+ ...++|+||.++|....  .....
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~-g~~~--~~~~~e-~~~~~d~vi~~vp~~~~--~~~v~   76 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAA-GAET--ASTAKA-VAEQCDVIITMLPNSPH--VKEVA   76 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCee--cCCHHH-HHhcCCEEEEeCCCHHH--HHHHH
Confidence            479999999999999999999999999999999998876542 2211  112222 23568999999985421  01000


Q ss_pred             CC----hhhhcCCCEEEEEeeCCCch--HHHHHHHHCCCeeec
Q 010101          448 VP----KEALKAYELVFDAVYTPRNT--RLLREAAEVGATVVS  484 (518)
Q Consensus       448 ~~----~~~l~~~~~v~Di~Y~P~~T--~ll~~A~~~G~~~i~  484 (518)
                      ..    ...++++.+++|+...+..+  .+.+.++++|..+++
T Consensus        77 ~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d  119 (296)
T PRK11559         77 LGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD  119 (296)
T ss_pred             cCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence            00    11246678999998875433  455566667766544

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.43  E-value=0.00076  Score=73.01  Aligned_cols=99  Identities=22%  Similarity=0.284  Sum_probs=69.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccccc-------------------------
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEY-------------------------  419 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~-------------------------  419 (518)
                      ..+.+++|+|+|.+|.+++..+..+|++|++++++.++.+ .++.++...+.++.                         
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle-~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKE-QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            3468999999999999999999999999999999998754 55667765432221                         


Q ss_pred             ccccCCCCccEEEEcCCCCCCCCCCCCCCChh---hhcCCCEEEEEeeCCC
Q 010101          420 LHEFFPEKGMILANASAIGMEPNSDQSPVPKE---ALKAYELVFDAVYTPR  467 (518)
Q Consensus       420 l~~~~~~~~divInatp~g~~~~~~~~~~~~~---~l~~~~~v~Di~Y~P~  467 (518)
                      +.+ ...++|++|+|.-+.-.|.  +..+..+   .++++.+++|+...+.
T Consensus       241 ~~e-~~~~~DIVI~TalipG~~a--P~Lit~emv~~MKpGsvIVDlA~d~G  288 (511)
T TIGR00561       241 FAA-QAKEVDIIITTALIPGKPA--PKLITEEMVDSMKAGSVIVDLAAEQG  288 (511)
T ss_pred             HHH-HhCCCCEEEECcccCCCCC--CeeehHHHHhhCCCCCEEEEeeeCCC
Confidence            111 2467999999883321221  1123433   4578899999988764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.43  E-value=0.00017  Score=77.94  Aligned_cols=112  Identities=20%  Similarity=0.187  Sum_probs=75.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCc----ccccccccccCCCCccEEEEcCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV---SGE----ALHFEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~---~~~----~~~~~~l~~~~~~~~divInatp~g~~  440 (518)
                      .++-+||-|-||++++..|.+.|++|+|+|||.++++++.+..   |..    ..+.+++.+ .++++|+||-+.+.+-.
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~-~l~~~dvIi~~v~~~~a   85 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVL-SIQKPRSVIILVKAGAP   85 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHh-cCCCCCEEEEECCCcHH
Confidence            4699999999999999999999999999999999999988742   222    113333322 34458999987765421


Q ss_pred             CCCCCCCCC--hhhhcCCCEEEEEeeC-CCchHHH-HHHHHCCCeee
Q 010101          441 PNSDQSPVP--KEALKAYELVFDAVYT-PRNTRLL-REAAEVGATVV  483 (518)
Q Consensus       441 ~~~~~~~~~--~~~l~~~~~v~Di~Y~-P~~T~ll-~~A~~~G~~~i  483 (518)
                        ++.. +.  ...+.++.+++|+... |..|.-+ ++++++|+.++
T Consensus        86 --V~~V-i~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fl  129 (493)
T PLN02350         86 --VDQT-IKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYL  129 (493)
T ss_pred             --HHHH-HHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence              1111 11  1235678899999876 5555444 44466666543

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.43  E-value=8.5e-05  Score=79.59  Aligned_cols=113  Identities=20%  Similarity=0.273  Sum_probs=75.6

Q ss_pred             EEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCC
Q 010101          369 IFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSP  447 (518)
Q Consensus       369 ~vlvlG-aGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~  447 (518)
                      ++.|+| .|++|++++..|.+.|.+|++++|+.+++++++..++...  ..+..+ ...++|+||.|+|+.....    .
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~--~~~~~e-~~~~aDvVIlavp~~~~~~----v   74 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEY--ANDNID-AAKDADIVIISVPINVTED----V   74 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCee--ccCHHH-HhccCCEEEEecCHHHHHH----H
Confidence            689998 7999999999999999999999999999888888776432  112222 3456899999998753211    1


Q ss_pred             CCh--hhhcCCCEEEEEeeC-CCchHHHHHHHHCCCeeeccHHH
Q 010101          448 VPK--EALKAYELVFDAVYT-PRNTRLLREAAEVGATVVSGVEM  488 (518)
Q Consensus       448 ~~~--~~l~~~~~v~Di~Y~-P~~T~ll~~A~~~G~~~i~G~~m  488 (518)
                      +..  ..++++.+++|+... +.....++.....|.+++.+-.|
T Consensus        75 l~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPm  118 (437)
T PRK08655         75 IKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPM  118 (437)
T ss_pred             HHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCC
Confidence            111  135677899999863 22222223222236667766555

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.42  E-value=0.0011  Score=61.05  Aligned_cols=110  Identities=23%  Similarity=0.337  Sum_probs=67.6

Q ss_pred             cccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .+++||+++|+|.+. .|+.++.-|.+.|+.|+++...-+..++                  ...++|+||.|++.   |
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~------------------~~~~ADIVVsa~G~---~   90 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQE------------------ITRRADIVVSAVGK---P   90 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHH------------------HHTTSSEEEE-SSS---T
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccc------------------eeeeccEEeeeecc---c
Confidence            678999999999986 9999999999999999999876432222                  23468999988853   2


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeCCC--c------hHHHHHHHH-CCC--eeeccHH-----HHHHHHHHHHH
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYTPR--N------TRLLREAAE-VGA--TVVSGVE-----MFIRQALGQFR  498 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~P~--~------T~ll~~A~~-~G~--~~i~G~~-----ml~~Qa~~qf~  498 (518)
                      +    .++.++++++.+|+|+-.++.  .      -.+ ..+++ .++  ++-.|.+     ||+.+-+.+.+
T Consensus        91 ~----~i~~~~ik~gavVIDvG~~~~~~~~~~~GDv~~-~~~~~~a~~itPvPgGVGplT~a~L~~N~v~a~~  158 (160)
T PF02882_consen   91 N----LIKADWIKPGAVVIDVGINYVPGDGKLVGDVDF-ESVKEKASAITPVPGGVGPLTVAMLMKNLVKAAK  158 (160)
T ss_dssp             T-----B-GGGS-TTEEEEE--CEEETTTTEEEESB-H-HHHHTTCSEEE-SSSSCHHHHHHHHHHHHHHHHH
T ss_pred             c----ccccccccCCcEEEecCCccccccceeeecccH-HHhhccceEEeeCCCCccHHHHHHHHHHHHHHHH
Confidence            2    377889999999999976644  2      233 34444 343  2234555     66666655544

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.42  E-value=0.00042  Score=70.57  Aligned_cols=94  Identities=19%  Similarity=0.229  Sum_probs=67.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcCc----ccccccccccCCCCccEEEEcCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSR-GA-RVIIFNRNYERAKALADAVSGE----ALHFEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~-G~-~v~i~nRt~~ka~~la~~~~~~----~~~~~~l~~~~~~~~divInatp~g~~  440 (518)
                      .+++.|+|+|.-|+.-+.++... +. +|.|+||++++++++++++...    ....++.++ ...++|+|+-||+.. .
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~e-av~~aDIV~taT~s~-~  194 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEA-ALRDADTITSITNSD-T  194 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEecCCC-C
Confidence            47899999999999999888754 56 8999999999999999887532    222233444 467899999999854 2


Q ss_pred             CCCCCCCCChhhhcCCCEEEEE-eeCCC
Q 010101          441 PNSDQSPVPKEALKAYELVFDA-VYTPR  467 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di-~Y~P~  467 (518)
                      |.     +..++++++..|.=+ .|.|.
T Consensus       195 P~-----~~~~~l~pg~hV~aiGs~~p~  217 (301)
T PRK06407        195 PI-----FNRKYLGDEYHVNLAGSNYPN  217 (301)
T ss_pred             cE-----ecHHHcCCCceEEecCCCCCC
Confidence            32     456778776443332 34454

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.36  E-value=0.00048  Score=72.33  Aligned_cols=90  Identities=19%  Similarity=0.239  Sum_probs=64.3

Q ss_pred             CcEEEEEccchhHHHHHHHHHH-C-CC-eEEEEeCCHHHHHHHHHHhcCc------ccccccccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKS-R-GA-RVIIFNRNYERAKALADAVSGE------ALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~-~-G~-~v~i~nRt~~ka~~la~~~~~~------~~~~~~l~~~~~~~~divInatp~  437 (518)
                      -+++.|+|+|..|+.-+.++.. . +. +|+|+||++++++++++++...      ....++.++ ...++|||+-||+.
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~e-av~~ADIVvtaT~s  233 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEE-VVRGSDIVTYCNSG  233 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHH-HHcCCCEEEEccCC
Confidence            4789999999999999999886 3 37 9999999999999999888532      111233334 46789999999974


Q ss_pred             CCC-CCCCCCC-CChhhhcCCCEE
Q 010101          438 GME-PNSDQSP-VPKEALKAYELV  459 (518)
Q Consensus       438 g~~-~~~~~~~-~~~~~l~~~~~v  459 (518)
                      ... |.  ..| +..++++++..|
T Consensus       234 ~~~~~s--~~Pv~~~~~lkpG~hv  255 (379)
T PRK06199        234 ETGDPS--TYPYVKREWVKPGAFL  255 (379)
T ss_pred             CCCCCC--cCcEecHHHcCCCcEE
Confidence            321 11  123 456677776544

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.36  E-value=0.00053  Score=68.81  Aligned_cols=108  Identities=17%  Similarity=0.212  Sum_probs=75.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC--CCeE-EEEeCCHHHHHHHHHHhcCc--ccccccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSR--GARV-IIFNRNYERAKALADAVSGE--ALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~--G~~v-~i~nRt~~ka~~la~~~~~~--~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..++.|||.|.+|+..+..|...  ++++ .+++|++++++++++.++..  ..+++++    ..+.|+|+.|+|.....
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eel----l~~~D~Vvi~tp~~~h~   81 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQL----ATHADIVVEAAPASVLR   81 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHH----hcCCCEEEECCCcHHHH
Confidence            46899999999999999999863  6665 48999999999999988732  2234443    34579999999865321


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeC-C-CchHHHHHHHHCCCeee
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYT-P-RNTRLLREAAEVGATVV  483 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~-P-~~T~ll~~A~~~G~~~i  483 (518)
                           .+....+..+.-|+...-. . ....+.+.|++.|.++.
T Consensus        82 -----e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~  120 (271)
T PRK13302         82 -----AIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQII  120 (271)
T ss_pred             -----HHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEE
Confidence                 1223446655555554322 1 23677788899998853

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.35  E-value=0.0011  Score=72.21  Aligned_cols=97  Identities=19%  Similarity=0.236  Sum_probs=63.1

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      +.+++++|+|.|++|++++..|...|++|+++++..++.+. ++..+.....-....+ .+.++|+||.+.  |      
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~-l~~~g~~~~~~~~~~~-~l~~~D~VV~Sp--G------   79 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRP-HAERGVATVSTSDAVQ-QIADYALVVTSP--G------   79 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHhCCCEEEcCcchHh-HhhcCCEEEECC--C------
Confidence            46789999999999999999999999999999987665443 2333321111000000 122344444322  1      


Q ss_pred             CCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHH
Q 010101          445 QSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIR  491 (518)
Q Consensus       445 ~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~  491 (518)
                                          .|...|.+++|+++|++++.-++++..
T Consensus        80 --------------------i~~~~p~~~~a~~~gi~v~~~iel~~~  106 (488)
T PRK03369         80 --------------------FRPTAPVLAAAAAAGVPIWGDVELAWR  106 (488)
T ss_pred             --------------------CCCCCHHHHHHHHCCCcEeeHHHHhhh
Confidence                                133567789999999999988887543

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.35  E-value=0.00079  Score=69.78  Aligned_cols=96  Identities=16%  Similarity=0.227  Sum_probs=67.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCccc---ccccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKS-RGA-RVIIFNRNYERAKALADAVSGEAL---HFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~-~G~-~v~i~nRt~~ka~~la~~~~~~~~---~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      -++++|||+|.-|+.-+.++.. ... +|+|+||++++++++++++....+   ..+++++ ...++|+|+.||+.. . 
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~-av~~ADIIvtaT~S~-~-  205 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAE-AVEGADIITTVTADK-T-  205 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEecCCC-C-
Confidence            4789999999999999887764 456 999999999999999988863211   2233444 567899999999732 1 


Q ss_pred             CCCCCC-CChhhhcCCCEEEEE-eeCCCc
Q 010101          442 NSDQSP-VPKEALKAYELVFDA-VYTPRN  468 (518)
Q Consensus       442 ~~~~~~-~~~~~l~~~~~v~Di-~Y~P~~  468 (518)
                         ..| +..++++++..|.=+ .|.|..
T Consensus       206 ---~~Pvl~~~~lkpG~hV~aIGs~~p~~  231 (346)
T PRK07589        206 ---NATILTDDMVEPGMHINAVGGDCPGK  231 (346)
T ss_pred             ---CCceecHHHcCCCcEEEecCCCCCCc
Confidence               112 556788776643322 355644

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.35  E-value=0.0037  Score=61.02  Aligned_cols=135  Identities=19%  Similarity=0.167  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNR----------NYERAKAL  406 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~-i~nR----------t~~ka~~l  406 (518)
                      +.|...+++..+....         ..+.+++++|.|.|.+|+.++..|.+.|++|+ |.+.          +.++..+.
T Consensus        11 g~Gv~~~~~~~~~~~~---------~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~   81 (227)
T cd01076          11 GRGVAYATREALKKLG---------IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAY   81 (227)
T ss_pred             hHHHHHHHHHHHHhcC---------CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHH
Confidence            5788888877665421         46789999999999999999999999999766 8877          77777666


Q ss_pred             HHHhcC-------cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCC
Q 010101          407 ADAVSG-------EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVG  479 (518)
Q Consensus       407 a~~~~~-------~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G  479 (518)
                      .+..+.       ..++.+++-   ..++|++|-|+..+..   +....  ..++ ..+|+.-.-+|-...--+.-+++|
T Consensus        82 ~~~~g~l~~~~~~~~~~~~~i~---~~~~Dvlip~a~~~~i---~~~~~--~~l~-a~~I~egAN~~~t~~a~~~L~~rG  152 (227)
T cd01076          82 KKEHGSVLGFPGAERITNEELL---ELDCDILIPAALENQI---TADNA--DRIK-AKIIVEAANGPTTPEADEILHERG  152 (227)
T ss_pred             HHhcCCcccCCCceecCCccce---eecccEEEecCccCcc---CHHHH--hhce-eeEEEeCCCCCCCHHHHHHHHHCC
Confidence            665542       111112221   2368999998864422   11111  1232 467888887776433334447789


Q ss_pred             CeeeccHHHHH
Q 010101          480 ATVVSGVEMFI  490 (518)
Q Consensus       480 ~~~i~G~~ml~  490 (518)
                      +.+++..-.-.
T Consensus       153 i~~~PD~~aNa  163 (227)
T cd01076         153 VLVVPDILANA  163 (227)
T ss_pred             CEEEChHHhcC
Confidence            98887665443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.35  E-value=0.00049  Score=64.87  Aligned_cols=126  Identities=20%  Similarity=0.245  Sum_probs=75.1

Q ss_pred             cccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccccc----ccccCCCCccEEEEcCCC
Q 010101          363 SPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEY----LHEFFPEKGMILANASAI  437 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~----l~~~~~~~~divInatp~  437 (518)
                      .+++||+++|||-+. .|+.++.-|.+.|+.|++++.+--....-.........+..+    +.+ ...++||||.|++.
T Consensus        58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~-~~~~ADIVIsAvG~  136 (197)
T cd01079          58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLD-CLSQSDVVITGVPS  136 (197)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHH-HhhhCCEEEEccCC
Confidence            478999999999986 999999999999999999963211100000000000000011    222 45679999988863


Q ss_pred             CCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeecc-----HHHHHHHHHHHHH
Q 010101          438 GMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSG-----VEMFIRQALGQFR  498 (518)
Q Consensus       438 g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G-----~~ml~~Qa~~qf~  498 (518)
                         |.   ..++.++++++.+|+|+-.+-..   -+.+++.--.+.+.     ..||+..-+..++
T Consensus       137 ---~~---~~i~~d~ik~GavVIDVGi~~dv---d~~v~~~as~iTPvVGpvTva~L~~Nlv~~~~  193 (197)
T cd01079         137 ---PN---YKVPTELLKDGAICINFASIKNF---EPSVKEKASIYVPSIGKVTIAMLLRNLLRLYH  193 (197)
T ss_pred             ---CC---CccCHHHcCCCcEEEEcCCCcCc---cHhHHhhcCEeCCCcCHHHHHHHHHHHHHHHH
Confidence               21   12688999999999999766321   13333321122332     3377766665554

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.33  E-value=0.0014  Score=70.41  Aligned_cols=44  Identities=36%  Similarity=0.471  Sum_probs=36.7

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHH
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY-ERAKALAD  408 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~-~ka~~la~  408 (518)
                      +++|+++|+|+|++|++++..|++.|++|++++++. +..++..+
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~   47 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALE   47 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHH
Confidence            467999999999999999999999999999999985 33433333

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.28  E-value=0.00031  Score=73.86  Aligned_cols=71  Identities=15%  Similarity=0.300  Sum_probs=53.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcC--cccccc----
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN-------------------YERAKALADAVSG--EALHFE----  418 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt-------------------~~ka~~la~~~~~--~~~~~~----  418 (518)
                      +++++|+|+|+||.|..++..|+..|+ +|++++++                   ..|++.+++.+..  ..+.++    
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            346899999999999999999999999 99999998                   5688888777642  111111    


Q ss_pred             -----cccccCCCCccEEEEcCC
Q 010101          419 -----YLHEFFPEKGMILANASA  436 (518)
Q Consensus       419 -----~l~~~~~~~~divInatp  436 (518)
                           ++.+ .+.++|+||+||-
T Consensus       213 ~~~~~~~~~-~~~~~D~Vv~~~d  234 (376)
T PRK08762        213 RVTSDNVEA-LLQDVDVVVDGAD  234 (376)
T ss_pred             cCChHHHHH-HHhCCCEEEECCC
Confidence                 1111 2457899999983

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.28  E-value=0.00023  Score=71.68  Aligned_cols=112  Identities=18%  Similarity=0.132  Sum_probs=74.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV  448 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~  448 (518)
                      +|.|||.|-+|.+++.+|.+.|.+|++++|+.++.+++.+. +.......+. + ...++|+||.|+|......    .+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~-g~~~~~~~~~-~-~~~~aDlVilavp~~~~~~----~~   74 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER-GLVDEASTDL-S-LLKDCDLVILALPIGLLLP----PS   74 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCcccccCCH-h-HhcCCCEEEEcCCHHHHHH----HH
Confidence            58999999999999999999999999999999887776543 2111011111 1 2467899999998643211    01


Q ss_pred             C--hhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHH
Q 010101          449 P--KEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       449 ~--~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                      .  ...++++.++.|+...  ....++.+.+.+.+++.+-.|.
T Consensus        75 ~~l~~~l~~~~ii~d~~Sv--k~~~~~~~~~~~~~~v~~HPm~  115 (279)
T PRK07417         75 EQLIPALPPEAIVTDVGSV--KAPIVEAWEKLHPRFVGSHPMA  115 (279)
T ss_pred             HHHHHhCCCCcEEEeCcch--HHHHHHHHHHhhCCceeeCCcC
Confidence            1  1124667889998765  3455677766655566655544

>PLN02256 arogenate dehydrogenase

Probab=97.26  E-value=0.00044  Score=70.52  Aligned_cols=117  Identities=18%  Similarity=0.150  Sum_probs=75.0

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      ++.++.|||+|.+|.+++..|.+.|.+|++++|+..  .+.+..++...  +.+..+....++|+||.|+|+......-.
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~--~~~a~~~gv~~--~~~~~e~~~~~aDvVilavp~~~~~~vl~  110 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY--SDIAAELGVSF--FRDPDDFCEEHPDVVLLCTSILSTEAVLR  110 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH--HHHHHHcCCee--eCCHHHHhhCCCCEEEEecCHHHHHHHHH
Confidence            567899999999999999999999999999999964  35555555422  22322211135899999998753221000


Q ss_pred             CCCChhhhcCCCEEEEEeeCCCchHHHHHHHH---CCCeeeccHHHH
Q 010101          446 SPVPKEALKAYELVFDAVYTPRNTRLLREAAE---VGATVVSGVEMF  489 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~---~G~~~i~G~~ml  489 (518)
                       .+....++++.+|.|+...  ....++..++   .+++++.+-.|+
T Consensus       111 -~l~~~~l~~~~iviDv~Sv--K~~~~~~~~~~l~~~~~~V~~HPma  154 (304)
T PLN02256        111 -SLPLQRLKRSTLFVDVLSV--KEFPKNLLLQVLPEEFDILCTHPMF  154 (304)
T ss_pred             -hhhhhccCCCCEEEecCCc--hHHHHHHHHHhCCCCCeEEecCCCC
Confidence             0111225677899999874  3344455554   245566666655

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.25  E-value=0.00048  Score=71.27  Aligned_cols=71  Identities=28%  Similarity=0.387  Sum_probs=52.9

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH---------------------HHHHHHHHHhcC---cc----
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY---------------------ERAKALADAVSG---EA----  414 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~---------------------~ka~~la~~~~~---~~----  414 (518)
                      .+++++|+|+|+||.|..++..|+..|+ +|+|++++.                     .|++.+++.+..   ..    
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~  100 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP  100 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence            3567899999999999999999999999 999999974                     467776665532   11    


Q ss_pred             c----ccccccccCCCCccEEEEcC
Q 010101          415 L----HFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       415 ~----~~~~l~~~~~~~~divInat  435 (518)
                      .    +.+++.+ ...++|+||+||
T Consensus       101 ~~~~~~~~~~~~-~~~~~DlVid~~  124 (338)
T PRK12475        101 VVTDVTVEELEE-LVKEVDLIIDAT  124 (338)
T ss_pred             EeccCCHHHHHH-HhcCCCEEEEcC
Confidence            0    1112223 356799999998

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.24  E-value=0.00096  Score=70.61  Aligned_cols=69  Identities=29%  Similarity=0.347  Sum_probs=55.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      ..+.|++|+|+|+|.+|+.++..+...|++|+++++++.|++ .|..+|......++    ....+|++|.||.
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~-~A~~~G~~~~~~~e----~v~~aDVVI~atG  266 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL-QAAMEGYEVMTMEE----AVKEGDIFVTTTG  266 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH-HHHhcCCEEccHHH----HHcCCCEEEECCC
Confidence            457899999999999999999999999999999999998864 56667764433332    2346799998884

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.23  E-value=0.0014  Score=70.44  Aligned_cols=38  Identities=21%  Similarity=0.150  Sum_probs=34.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      +++|+++|+|.|++|++++..|++.|++|++.+++...
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~   40 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFS   40 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCcc
Confidence            45789999999999999999999999999999987544

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=97.22  E-value=0.00038  Score=75.10  Aligned_cols=110  Identities=18%  Similarity=0.239  Sum_probs=73.1

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-C-cc---cccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          370 FVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS-G-EA---LHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       370 vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~-~-~~---~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      +.|||.|-||.+++..|++.|++|+++||++++++++.+... . ..   .+.+++.+ .+.++|+||-+.|.+-.  ++
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~-~l~~~dvIil~v~~~~~--v~   78 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQ-SLERPRKIMLMVKAGAP--VD   78 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHh-hcCCCCEEEEECCCcHH--HH
Confidence            679999999999999999999999999999999999987622 1 11   12333322 23567988888776521  11


Q ss_pred             CCCCCh--hhhcCCCEEEEEee-CCCchH-HHHHHHHCCCeee
Q 010101          445 QSPVPK--EALKAYELVFDAVY-TPRNTR-LLREAAEVGATVV  483 (518)
Q Consensus       445 ~~~~~~--~~l~~~~~v~Di~Y-~P~~T~-ll~~A~~~G~~~i  483 (518)
                      . .+..  ..+.++.+++|..- .|..|. ..++.+++|+.++
T Consensus        79 ~-Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fv  120 (467)
T TIGR00873        79 A-VINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFV  120 (467)
T ss_pred             H-HHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEE
Confidence            1 1111  23567889999975 455543 3345556676543

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.21  E-value=0.0012  Score=71.68  Aligned_cols=98  Identities=22%  Similarity=0.252  Sum_probs=68.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccc--c-----------ccc---------
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE--Y-----------LHE---------  422 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~--~-----------l~~---------  422 (518)
                      ..+.+|+|+|+|.+|..++..+..+|++|+++++++++.+ .++++|.+...++  +           +.+         
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle-~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAE-QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            3578999999999999999999999999999999998865 5667886532221  0           000         


Q ss_pred             --cCCCCccEEEEcCCCCCCCCCCCCCCCh---hhhcCCCEEEEEeeC
Q 010101          423 --FFPEKGMILANASAIGMEPNSDQSPVPK---EALKAYELVFDAVYT  465 (518)
Q Consensus       423 --~~~~~~divInatp~g~~~~~~~~~~~~---~~l~~~~~v~Di~Y~  465 (518)
                        ....++|++|+|+...-.+.  +..+..   +.++++.+++|+...
T Consensus       242 ~~~~~~gaDVVIetag~pg~~a--P~lit~~~v~~mkpGgvIVdvg~~  287 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPA--PKLITAEMVASMKPGSVIVDLAAE  287 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccC--cchHHHHHHHhcCCCCEEEEEccC
Confidence              01246899999986432211  111222   245788999999874

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.21  E-value=0.00068  Score=69.58  Aligned_cols=71  Identities=24%  Similarity=0.236  Sum_probs=55.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      ..++++++.|||.|-+|++++..|...|++|.+.+|+.++..+.++..+....+.+   + ...++|+|+.++|.
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~---e-aa~~ADVVvLaVPd   83 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVA---E-AAKWADVIMILLPD   83 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHH---H-HHhcCCEEEEcCCH
Confidence            35778999999999999999999999999999999987777777776664433322   2 34567888888774

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.12  E-value=0.011  Score=57.36  Aligned_cols=149  Identities=15%  Similarity=0.193  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH----------HHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY----------ERAKAL  406 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~----------~ka~~l  406 (518)
                      +.|...+++..+... +        .++++++++|.|.|.+|+.++..|.++|+ .|.|.+.+.          +..+..
T Consensus         3 g~Gv~~~~~~~~~~~-~--------~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~   73 (217)
T cd05211           3 GYGVVVAMKAAMKHL-G--------DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYA   73 (217)
T ss_pred             hhHHHHHHHHHHHHc-C--------CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHH
Confidence            567777777655432 1        46889999999999999999999999999 788888776          544433


Q ss_pred             HHHhcCccccc-ccc--cccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeee
Q 010101          407 ADAVSGEALHF-EYL--HEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVV  483 (518)
Q Consensus       407 a~~~~~~~~~~-~~l--~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i  483 (518)
                      .+..+....+- +.+  .+....++|++|-|+.-+.   ++..+.  ..+ ..++|+.-.-+|-...--+.-+++|..++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~---i~~~~a--~~l-~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~  147 (217)
T cd05211          74 VALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNV---IDLENA--KKL-KAKVVAEGANNPTTDEALRILHERGIVVA  147 (217)
T ss_pred             HhhCCccccCcccccCcccceeccccEEeeccccCc---cChhhH--hhc-CccEEEeCCCCCCCHHHHHHHHHCCcEEE
Confidence            33322111111 001  1111236899998886442   122111  122 24678888877764433344477899888


Q ss_pred             ccHHHHHHHHHHHHHHhc
Q 010101          484 SGVEMFIRQALGQFRLFT  501 (518)
Q Consensus       484 ~G~~ml~~Qa~~qf~lw~  501 (518)
                      +..-+-....+.++--|.
T Consensus       148 Pd~~~NaGGvi~s~~E~~  165 (217)
T cd05211         148 PDIVANAGGVIVSYFEWV  165 (217)
T ss_pred             ChHHhcCCCeEeEHHHhc
Confidence            888776544444444444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.10  E-value=0.00096  Score=61.28  Aligned_cols=69  Identities=23%  Similarity=0.274  Sum_probs=49.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-Ccc---cc-------cccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS-GEA---LH-------FEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~-~~~---~~-------~~~l~~~~~~~~divInatp~  437 (518)
                      +|.|+|+|..|.|+|..|+..|.+|+++.|+.+..+.+-+.-. ...   ..       -.++++ .++++|+||-++|.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~-a~~~ad~IiiavPs   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEE-ALEDADIIIIAVPS   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHH-HHTT-SEEEE-S-G
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHH-HhCcccEEEecccH
Confidence            5899999999999999999999999999999998888865432 111   00       123333 45778999999985


Q ss_pred             C
Q 010101          438 G  438 (518)
Q Consensus       438 g  438 (518)
                      -
T Consensus        80 ~   80 (157)
T PF01210_consen   80 Q   80 (157)
T ss_dssp             G
T ss_pred             H
Confidence            3

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=97.10  E-value=0.015  Score=62.28  Aligned_cols=185  Identities=19%  Similarity=0.192  Sum_probs=120.7

Q ss_pred             ecCCCCcccCHHHHHHHHHHcCCCceEEecccC----cHHHHHHHh-cCCCCCEEEecccchHHHHhcccccC------h
Q 010101          243 VSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD----DVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVH------P  311 (518)
Q Consensus       243 iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~------~  311 (518)
                      +|+--..+.--.|-.++.+..|++..|.+++-+    ++-.-+..+ .++...|+.|-.|+-    .++|+-+      +
T Consensus        42 VGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~ell~~I~~lNeD~tvHGiiVQLPLp----~hide~~Vt~aI~p  117 (935)
T KOG4230|consen   42 VGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGELLREIKALNEDPTVHGIIVQLPLP----AHIDEDTVTEAIDP  117 (935)
T ss_pred             ecCcCCcceeehhhhhHHHhcCCceEEecCcccccHHHHHHHHHhccCCCccceEEEeccCc----cccchhhHhhccCc
Confidence            455444445556888999999999999998753    343444555 466799999999976    3333211      0


Q ss_pred             --hhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHH
Q 010101          312 --LAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKS  388 (518)
Q Consensus       312 --~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~  388 (518)
                        ...-.+..|.=.-.+.+|+-+=+-.--.|++..|++.     +        ..+.|++++|+|-.- +|+.+++-|.+
T Consensus       118 eKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a-----~--------v~v~Gk~aVVlGRS~IVG~Pia~LL~~  184 (935)
T KOG4230|consen  118 EKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEA-----G--------VFVAGKNAVVLGRSKIVGSPIAALLLW  184 (935)
T ss_pred             ccccccccccchhhhhccCCCceeeccChHHHHHHHHHc-----C--------CccccceeEEEecccccCChHHHHHHh
Confidence              1111233443221111444444555678988876641     2        678999999999764 88999999999


Q ss_pred             CCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEE--eeCC
Q 010101          389 RGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDA--VYTP  466 (518)
Q Consensus       389 ~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di--~Y~P  466 (518)
                      ..+.|+++--   |.+.|++               ...++||||.|+..   |.    -+-.+|++++.+|+|+  +|-|
T Consensus       185 ~NaTVTiCHS---KT~~lae---------------~v~~ADIvIvAiG~---Pe----fVKgdWiKpGavVIDvGINyvp  239 (935)
T KOG4230|consen  185 ANATVTICHS---KTRNLAE---------------KVSRADIVIVAIGQ---PE----FVKGDWIKPGAVVIDVGINYVP  239 (935)
T ss_pred             cCceEEEecC---CCccHHH---------------HhccCCEEEEEcCC---cc----eeecccccCCcEEEEccccccC
Confidence            8889999753   2223332               23568999988853   21    2556899999999997  6666


Q ss_pred             Cch
Q 010101          467 RNT  469 (518)
Q Consensus       467 ~~T  469 (518)
                      ..+
T Consensus       240 D~~  242 (935)
T KOG4230|consen  240 DPS  242 (935)
T ss_pred             CCC
Confidence            543

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.10  E-value=0.00055  Score=68.95  Aligned_cols=128  Identities=16%  Similarity=0.152  Sum_probs=80.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC----CeEEEEeCCH-HHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRG----ARVIIFNRNY-ERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G----~~v~i~nRt~-~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      .++.|||+|-||.+++..|.+.|    .+|+++||+. ++++.+++.++...  ..+..+ ...++|+||-+++......
T Consensus         4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~--~~~~~e-~~~~aDvVilav~p~~~~~   80 (279)
T PRK07679          4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKG--THNKKE-LLTDANILFLAMKPKDVAE   80 (279)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceE--eCCHHH-HHhcCCEEEEEeCHHHHHH
Confidence            57999999999999999999987    4899999986 47788887766432  122222 2356899999998643221


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhc
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFT  501 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~  501 (518)
                      .- ..+ ...+.++.+++|+.-.= ....++.....+.+++.+..+.-.+....+-.|.
T Consensus        81 vl-~~l-~~~~~~~~liIs~~aGi-~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~  136 (279)
T PRK07679         81 AL-IPF-KEYIHNNQLIISLLAGV-STHSIRNLLQKDVPIIRAMPNTSAAILKSATAIS  136 (279)
T ss_pred             HH-HHH-HhhcCCCCEEEEECCCC-CHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEe
Confidence            00 001 11245668999985432 2222344444566777776655444444455554

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.08  E-value=0.0012  Score=60.72  Aligned_cols=71  Identities=17%  Similarity=0.195  Sum_probs=49.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      .+++|++++|+|+|.+|..-+..|.+.|++|+|++.+  ..+++.+ ++.....-..+.+..+.++|+||-+|.
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~-l~~i~~~~~~~~~~dl~~a~lViaaT~   79 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKE-LPYITWKQKTFSNDDIKDAHLIYAATN   79 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHh-ccCcEEEecccChhcCCCceEEEECCC
Confidence            5688999999999999999999999999999999644  3344433 221111112222224567899998885

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.07  E-value=0.0017  Score=63.20  Aligned_cols=72  Identities=35%  Similarity=0.456  Sum_probs=56.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-cc----ccccc----------ccccCCCCc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG-EA----LHFEY----------LHEFFPEKG  428 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~-~~----~~~~~----------l~~~~~~~~  428 (518)
                      +++|.++|-|| .|.|.|++..|.+.|++|.+..|..++.++|+.+++. ..    .++.|          +.+ ...+.
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~-~~g~i   82 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPE-EFGRI   82 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHH-hhCcc
Confidence            45688999999 4899999999999999999999999999999999983 21    12211          112 34568


Q ss_pred             cEEEEcCCC
Q 010101          429 MILANASAI  437 (518)
Q Consensus       429 divInatp~  437 (518)
                      |++||...+
T Consensus        83 DiLvNNAGl   91 (246)
T COG4221          83 DILVNNAGL   91 (246)
T ss_pred             cEEEecCCC
Confidence            999997643

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.07  E-value=0.00096  Score=64.49  Aligned_cols=71  Identities=17%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHhcC--ccccc-----
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY------------------ERAKALADAVSG--EALHF-----  417 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~------------------~ka~~la~~~~~--~~~~~-----  417 (518)
                      .+++++|+|+|+||+|..++..|+..|+ ++++++.+.                  .|++.+++.+..  ..+.+     
T Consensus        25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~  104 (212)
T PRK08644         25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE  104 (212)
T ss_pred             HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence            4667899999999999999999999999 899999872                  467666665531  11111     


Q ss_pred             ----ccccccCCCCccEEEEcC
Q 010101          418 ----EYLHEFFPEKGMILANAS  435 (518)
Q Consensus       418 ----~~l~~~~~~~~divInat  435 (518)
                          +++.+ ...++|+||+|+
T Consensus       105 ~i~~~~~~~-~~~~~DvVI~a~  125 (212)
T PRK08644        105 KIDEDNIEE-LFKDCDIVVEAF  125 (212)
T ss_pred             ecCHHHHHH-HHcCCCEEEECC
Confidence                11112 245689999885

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.07  E-value=0.0028  Score=65.05  Aligned_cols=113  Identities=24%  Similarity=0.282  Sum_probs=79.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCc----ccccccccccCCCCccEEEEcCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKS-RGA-RVIIFNRNYERAKALADAVSGE----ALHFEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~-~G~-~v~i~nRt~~ka~~la~~~~~~----~~~~~~l~~~~~~~~divInatp~g~~  440 (518)
                      -+.+.|||+|..|+.-+.++.. .++ +|.|++|+++.++++++.+...    ....++.++ ..+++|+||-|||.- .
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~-av~~aDiIvt~T~s~-~  207 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEE-AVEGADIVVTATPST-E  207 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHH-HhhcCCEEEEecCCC-C
Confidence            3689999999999999999985 467 9999999999999999777543    223334434 567899999999853 2


Q ss_pred             CCCCCCCCChhhhcCCCEEEEEee--CCCchHHHHHHHHCC-CeeeccHH
Q 010101          441 PNSDQSPVPKEALKAYELVFDAVY--TPRNTRLLREAAEVG-ATVVSGVE  487 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di~Y--~P~~T~ll~~A~~~G-~~~i~G~~  487 (518)
                      |     .+..++++++.. +..+-  .|..+.+-.+..++- +-+++-++
T Consensus       208 P-----il~~~~l~~G~h-I~aiGad~p~k~Eld~e~l~ra~~vvvD~~~  251 (330)
T COG2423         208 P-----VLKAEWLKPGTH-INAIGADAPGKRELDPEVLARADRVVVDSLE  251 (330)
T ss_pred             C-----eecHhhcCCCcE-EEecCCCCcccccCCHHHHHhcCeEEEcCHH
Confidence            2     256678887654 34433  466666666665544 66666554

>PLN02494 adenosylhomocysteinase

Probab=97.07  E-value=0.0014  Score=69.95  Aligned_cols=69  Identities=29%  Similarity=0.314  Sum_probs=52.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      ..+.|++++|+|.|.+|+.++..+...|++|+++++++.++.. +...+....++++    .+..+|++|.||.
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e-A~~~G~~vv~leE----al~~ADVVI~tTG  318 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ-ALMEGYQVLTLED----VVSEADIFVTTTG  318 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH-HHhcCCeeccHHH----HHhhCCEEEECCC
Confidence            4578999999999999999999999999999999999887543 3333433333332    3456799998764

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.07  E-value=0.00074  Score=72.85  Aligned_cols=112  Identities=21%  Similarity=0.314  Sum_probs=72.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCccccccccccc--CCCCccEEEEcCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV---SGEALHFEYLHEF--FPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~---~~~~~~~~~l~~~--~~~~~divInatp~g~~~~~  443 (518)
                      ++.|||.|-||.+++..|++.|++|+++||++++++++.+..   +.......++.++  .+.++|+||-+.+.+-.  +
T Consensus         3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~--v   80 (470)
T PTZ00142          3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA--V   80 (470)
T ss_pred             EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH--H
Confidence            689999999999999999999999999999999999987642   2111112222221  22357877766554411  1


Q ss_pred             CCCCCC--hhhhcCCCEEEEEeeC-CCch-HHHHHHHHCCCeee
Q 010101          444 DQSPVP--KEALKAYELVFDAVYT-PRNT-RLLREAAEVGATVV  483 (518)
Q Consensus       444 ~~~~~~--~~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~i  483 (518)
                      +.. +.  ...+.++.+++|..-. |..| ...++++++|+.++
T Consensus        81 ~~v-i~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fl  123 (470)
T PTZ00142         81 DET-IDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYL  123 (470)
T ss_pred             HHH-HHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            110 11  1135678899999765 4444 34455667776654

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.06  E-value=0.001  Score=66.11  Aligned_cols=101  Identities=15%  Similarity=0.141  Sum_probs=65.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHhc-CcccccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA---RVIIFNRNYERAKALADAVS-GEALHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~---~v~i~nRt~~ka~~la~~~~-~~~~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      ++.|||+|-+|++++..|.+.|.   .+.+++|+.++++++++.++ ...  ..+..+ ...++|+||-|++......  
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~--~~~~~~-~~~~aDvVilav~p~~~~~--   76 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRI--AKDNQA-VVDRSDVVFLAVRPQIAEE--   76 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceE--eCCHHH-HHHhCCEEEEEeCHHHHHH--
Confidence            58999999999999999998884   47899999999999988763 222  122222 2346899999997532110  


Q ss_pred             CCCCChhhhcCCCEEEEEeeCCCchHHHHHHHH
Q 010101          445 QSPVPKEALKAYELVFDAVYTPRNTRLLREAAE  477 (518)
Q Consensus       445 ~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~  477 (518)
                        .+..-.+.++.+|++++ .+.....++....
T Consensus        77 --vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~  106 (258)
T PRK06476         77 --VLRALRFRPGQTVISVI-AATDRAALLEWIG  106 (258)
T ss_pred             --HHHHhccCCCCEEEEEC-CCCCHHHHHHHhC
Confidence              01111134556777755 4455555555443

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=97.04  E-value=0.0011  Score=67.34  Aligned_cols=70  Identities=19%  Similarity=0.210  Sum_probs=54.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      ..+++|++.|||.|-+|+++|..|...|++|.+++|. .+..+.++..+....++++    ...++|+|+...|.
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl~E----aak~ADVV~llLPd   81 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSVSE----AVRTAQVVQMLLPD   81 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCHHH----HHhcCCEEEEeCCC
Confidence            4578999999999999999999999999999999986 5555556655544333333    34578999988884

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.01  E-value=0.0015  Score=64.25  Aligned_cols=70  Identities=17%  Similarity=0.161  Sum_probs=52.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCC---C-eEEEEeC-CHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRG---A-RVIIFNR-NYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G---~-~v~i~nR-t~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      +.++.|||+|.+|++++..|.+.|   . +|++++| +.++++++++.++...  ..+..+ ...++|+||.++|...
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~DiViiavp~~~   78 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVST--TTDWKQ-HVTSVDTIVLAMPPSA   78 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE--eCChHH-HHhcCCEEEEecCHHH
Confidence            468999999999999999998876   3 3888998 4788999988776432  122222 3456899999998753

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.00  E-value=0.0013  Score=65.79  Aligned_cols=106  Identities=19%  Similarity=0.200  Sum_probs=72.0

Q ss_pred             EEEEEccchhHHHHHHHHHHC--CC-eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSR--GA-RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~--G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      ++.|||.|.+|+.++.++.+.  ++ -+.+++|+.++++++++.++...  +.++++ ...+.|+|+.|+|.....    
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~--~~~~~e-ll~~~DvVvi~a~~~~~~----   75 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKA--CLSIDE-LVEDVDLVVECASVNAVE----   75 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCee--ECCHHH-HhcCCCEEEEcCChHHHH----
Confidence            689999999999999999876  45 47799999999999988766432  233333 235789999998754321    


Q ss_pred             CCCChhhhcCCCEEEEEee----C-CCchHHHHHHHHCCCee
Q 010101          446 SPVPKEALKAYELVFDAVY----T-PRNTRLLREAAEVGATV  482 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~Y----~-P~~T~ll~~A~~~G~~~  482 (518)
                       .+-...++.+.-|+.+.-    . +....+.+.|++.|.++
T Consensus        76 -~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l  116 (265)
T PRK13304         76 -EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKI  116 (265)
T ss_pred             -HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEE
Confidence             122334555544555432    1 22357778889999763

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.002  Score=65.24  Aligned_cols=48  Identities=35%  Similarity=0.479  Sum_probs=43.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+.+++++|.|+ ||.|++++..|++.|++|.+++|+.++++++++.+
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l   84 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRI   84 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4567899999997 78999999999999999999999999988887765

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.97  E-value=0.0017  Score=68.52  Aligned_cols=69  Identities=30%  Similarity=0.350  Sum_probs=53.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      ..+.|++++|+|+|.+|+.++..+...|++|+++++++.++.+. ...+....+.++    ....+|++|.+|+
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-~~~G~~v~~lee----al~~aDVVItaTG  259 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-AMDGFRVMTMEE----AAKIGDIFITATG  259 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-HhcCCEeCCHHH----HHhcCCEEEECCC
Confidence            35789999999999999999999999999999999999886443 333443333332    3456899998874

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.96  E-value=0.0018  Score=60.90  Aligned_cols=39  Identities=26%  Similarity=0.381  Sum_probs=33.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALA  407 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la  407 (518)
                      +|.|+|+|-||+.++..++..|++|++++++++..++.-
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~   39 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERAR   39 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhh
Confidence            588999999999999999999999999999998765543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.95  E-value=0.00084  Score=70.18  Aligned_cols=117  Identities=22%  Similarity=0.214  Sum_probs=73.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccc--cccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH--FEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~--~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      +++.|||.|-+|.+++.+|.+.|.++.+++++.++.+ ++...+.....  ..++.+ ...++|+||-|+|.......-.
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~-~~~a~~~~~~~~~~~~~~~-~~~~aDlVilavP~~~~~~vl~   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQ-LARALGFGVIDELAADLQR-AAAEADLIVLAVPVDATAALLA   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHH-HHHHhcCCCCcccccCHHH-HhcCCCEEEEeCCHHHHHHHHH
Confidence            3689999999999999999999998888998876543 33232221111  122233 3467999999999753211000


Q ss_pred             CCCChhhhcCCCEEEEEeeCCCchHHHHHHHH---CCCeeeccHHHH
Q 010101          446 SPVPKEALKAYELVFDAVYTPRNTRLLREAAE---VGATVVSGVEMF  489 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~---~G~~~i~G~~ml  489 (518)
                       .+....++++.+|.|+....  ...++.+++   .+.++++|-.|.
T Consensus        79 -~l~~~~l~~~~ivtDv~SvK--~~i~~~~~~~~~~~~~~ig~HPMa  122 (359)
T PRK06545         79 -ELADLELKPGVIVTDVGSVK--GAILAEAEALLGDLIRFVGGHPMA  122 (359)
T ss_pred             -HHhhcCCCCCcEEEeCcccc--HHHHHHHHHhcCCCCeEEeeCCcC
Confidence             01111245678899987653  344455554   356788876665

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.95  E-value=0.0021  Score=65.51  Aligned_cols=67  Identities=19%  Similarity=0.288  Sum_probs=47.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ..+.||++.|+|.|.+|++++..|+..|++|..++|+....       +... .+.++++ ...++|+|+.+.|..
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~-~~~~l~e-ll~~aDiv~~~lp~t  184 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-------GISS-IYMEPED-IMKKSDFVLISLPLT  184 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-------Cccc-ccCCHHH-HHhhCCEEEECCCCC
Confidence            35789999999999999999998888999999999984321       1100 0122333 345577777777753

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.95  E-value=0.0014  Score=67.92  Aligned_cols=37  Identities=32%  Similarity=0.495  Sum_probs=33.8

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY  400 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~  400 (518)
                      .+.+++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus        21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            3567899999999999999999999999 999999873

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.94  E-value=0.0012  Score=68.92  Aligned_cols=71  Identities=14%  Similarity=0.245  Sum_probs=52.3

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhcCc--cccc----
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY-------------------ERAKALADAVSGE--ALHF----  417 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~-------------------~ka~~la~~~~~~--~~~~----  417 (518)
                      .+++++|+|+|+||.|..++..|+..|+ +++|++.+.                   .|++.+++.+..-  .+.+    
T Consensus        25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~  104 (355)
T PRK05597         25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV  104 (355)
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence            3567899999999999999999999999 999999764                   5777777666421  1111    


Q ss_pred             -----ccccccCCCCccEEEEcC
Q 010101          418 -----EYLHEFFPEKGMILANAS  435 (518)
Q Consensus       418 -----~~l~~~~~~~~divInat  435 (518)
                           ++..+ .+.++|+||+|+
T Consensus       105 ~~i~~~~~~~-~~~~~DvVvd~~  126 (355)
T PRK05597        105 RRLTWSNALD-ELRDADVILDGS  126 (355)
T ss_pred             eecCHHHHHH-HHhCCCEEEECC
Confidence                 11112 246799999997

>PLN02712 arogenate dehydrogenase

Probab=96.93  E-value=0.0014  Score=73.84  Aligned_cols=117  Identities=18%  Similarity=0.189  Sum_probs=75.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      +.+++.|||.|.+|++++.+|.+.|.+|++++|+..+  +.+..++...  ..+..+....++|+||-|+|+......-.
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~--~~A~~~Gv~~--~~d~~e~~~~~aDvViLavP~~~~~~vl~  126 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS--LAARSLGVSF--FLDPHDLCERHPDVILLCTSIISTENVLK  126 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHcCCEE--eCCHHHHhhcCCCEEEEcCCHHHHHHHHH
Confidence            4578999999999999999999999999999999554  3455665332  22222212235899999999753221100


Q ss_pred             CCCChhhhcCCCEEEEEeeCCCchHHHHHHHH---CCCeeeccHHHH
Q 010101          446 SPVPKEALKAYELVFDAVYTPRNTRLLREAAE---VGATVVSGVEMF  489 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~---~G~~~i~G~~ml  489 (518)
                       .+....++++.+|+|+...  .+..++..++   .|+.++.+-.|+
T Consensus       127 -~l~~~~l~~g~iVvDv~Sv--K~~~~~~l~~~l~~~~~~v~~HPMa  170 (667)
T PLN02712        127 -SLPLQRLKRNTLFVDVLSV--KEFAKNLLLDYLPEDFDIICSHPMF  170 (667)
T ss_pred             -hhhhhcCCCCeEEEECCCC--cHHHHHHHHHhcCCCCeEEeeCCcC
Confidence             0111235677899999633  4444444443   366777777776

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.91  E-value=0.0017  Score=60.74  Aligned_cols=32  Identities=22%  Similarity=0.348  Sum_probs=30.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY  400 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~  400 (518)
                      +|+|+|+||+|..++..|+..|+ ++++++++.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 899999975

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.91  E-value=0.0017  Score=62.17  Aligned_cols=36  Identities=19%  Similarity=0.448  Sum_probs=33.6

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      .++.++|+|+|+||+|..++..|+..|+ +|++++++
T Consensus        18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4667899999999999999999999999 89999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02712 arogenate dehydrogenase

Probab=96.91  E-value=0.00082  Score=75.61  Aligned_cols=121  Identities=17%  Similarity=0.186  Sum_probs=73.5

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .+.++++.|||.|.+|++++.+|.+.|.+|++++|+...  +.+.+++...  ..++.+.....+|+||-|+|+......
T Consensus       366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~--~~a~~~Gv~~--~~~~~el~~~~aDvVILavP~~~~~~v  441 (667)
T PLN02712        366 DGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS--DEAQKLGVSY--FSDADDLCEEHPEVILLCTSILSTEKV  441 (667)
T ss_pred             CCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH--HHHHHcCCeE--eCCHHHHHhcCCCEEEECCChHHHHHH
Confidence            356789999999999999999999999999999999653  2344555321  222222111247999999996532210


Q ss_pred             CCCCCChhhhcCCCEEEEEeeCCC-chHHHHHHHHCCCeeeccHHHH
Q 010101          444 DQSPVPKEALKAYELVFDAVYTPR-NTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       444 ~~~~~~~~~l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                      -. .+....++++.+++|+...-. ....++.....|+.++.+-.|+
T Consensus       442 i~-~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~  487 (667)
T PLN02712        442 LK-SLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMF  487 (667)
T ss_pred             HH-HHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCC
Confidence            00 011123567789999976521 1222233333466666444443

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0034  Score=63.56  Aligned_cols=49  Identities=33%  Similarity=0.516  Sum_probs=44.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .++++++++|.|+ ||.|++++..|.+.|++|.+++|+.+++++++++++
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~   54 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELG   54 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            3578899999997 789999999999999999999999999999988875

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=96.85  E-value=0.0048  Score=64.63  Aligned_cols=67  Identities=18%  Similarity=0.259  Sum_probs=48.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ..+.||++.|||.|.+|+.++..|...|++|..+++.....     ...   ..+.++++ .+.++|+|+..+|..
T Consensus       112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~-----~~~---~~~~~L~e-ll~~sDiI~lh~PLt  178 (378)
T PRK15438        112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR-----GDE---GDFRSLDE-LVQEADILTFHTPLF  178 (378)
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc-----ccc---cccCCHHH-HHhhCCEEEEeCCCC
Confidence            57899999999999999999999999999999999753211     000   11223333 345678888877754

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.84  E-value=0.002  Score=65.18  Aligned_cols=41  Identities=24%  Similarity=0.399  Sum_probs=37.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD  408 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~  408 (518)
                      ++|.|||+|-+|++++..|++.|++|++++|++++.+++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~   42 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQ   42 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            47999999999999999999999999999999998887654

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.84  E-value=0.0055  Score=66.22  Aligned_cols=97  Identities=22%  Similarity=0.171  Sum_probs=59.7

Q ss_pred             cCCcEEEEEccchhHHH-HHHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          365 IAGKIFVLVGAGGAGRA-LAFGAKSRGARVIIFNRNYER-AKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       365 l~~k~vlvlGaGg~ara-ia~~L~~~G~~v~i~nRt~~k-a~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      .++++++|+|.|++|++ ++..|.++|++|++.++.... .++|. ..+..... ..-.+ .+.++|+||-  ++|.   
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~-~~gi~~~~-~~~~~-~~~~~d~vv~--spgi---   76 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLL-ELGAIIFI-GHDAE-NIKDADVVVY--SSAI---   76 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHH-HCCCEEeC-CCCHH-HCCCCCEEEE--CCCC---
Confidence            35689999999999999 699999999999999976432 22221 11211100 00000 1123444442  1121   


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHH
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQ  492 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Q  492 (518)
                                             |...|.+++|+++|++++...+++...
T Consensus        77 -----------------------~~~~~~~~~a~~~~i~i~~~~e~~~~~  103 (461)
T PRK00421         77 -----------------------PDDNPELVAARELGIPVVRRAEMLAEL  103 (461)
T ss_pred             -----------------------CCCCHHHHHHHHCCCcEEeHHHHHHHH
Confidence                                   234567888888999998888886543

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.84  E-value=0.0015  Score=66.09  Aligned_cols=107  Identities=18%  Similarity=0.136  Sum_probs=71.0

Q ss_pred             EEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCC--C
Q 010101          372 LVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV--P  449 (518)
Q Consensus       372 vlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~--~  449 (518)
                      |||.|-||.+++..|.+.|.+|+++||+.++.+.+.+. +...  ..+..+ ...++|+||-+.|....  ......  .
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~--~~s~~~-~~~~advVil~vp~~~~--~~~v~~g~~   74 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAA-GAQA--AASPAE-AAEGADRVITMLPAGQH--VISVYSGDE   74 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHc-CCee--cCCHHH-HHhcCCEEEEeCCChHH--HHHHHcCcc
Confidence            58999999999999999999999999999998887653 3221  112222 34568999999885321  011000  0


Q ss_pred             --hhhhcCCCEEEEEeeCCC-chHH-HHHHHHCCCeeec
Q 010101          450 --KEALKAYELVFDAVYTPR-NTRL-LREAAEVGATVVS  484 (518)
Q Consensus       450 --~~~l~~~~~v~Di~Y~P~-~T~l-l~~A~~~G~~~i~  484 (518)
                        ...+.++.+++|+..... .+.. -+.++++|+.+++
T Consensus        75 ~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd  113 (288)
T TIGR01692        75 GILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD  113 (288)
T ss_pred             hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence              112466789999987643 3333 3455678877666

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.84  E-value=0.0023  Score=66.07  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=75.9

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .+.|+++.|||.|.+|++++..|...|++|+.++|+.+......+     .  ..++.+ ...++|+|+.++|..-.  +
T Consensus       143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~-----~--~~~l~e-ll~~aDiVil~lP~t~~--t  212 (330)
T PRK12480        143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLT-----Y--KDSVKE-AIKDADIISLHVPANKE--S  212 (330)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhh-----c--cCCHHH-HHhcCCEEEEeCCCcHH--H
Confidence            567899999999999999999999999999999999765332111     1  112333 45678999999886421  0


Q ss_pred             CCCCCChh---hhcCCCEEEEEeeCCC-chHHHHHHHHCCCeeeccHHHH
Q 010101          444 DQSPVPKE---ALKAYELVFDAVYTPR-NTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       444 ~~~~~~~~---~l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                       ...+...   .++++.+++++.=.+. .+.-+.+|-+.|.-.--|++.+
T Consensus       213 -~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~  261 (330)
T PRK12480        213 -YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTY  261 (330)
T ss_pred             -HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEecc
Confidence             1112222   2466778888776554 4665666666665444455554

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.84  E-value=0.0025  Score=54.24  Aligned_cols=67  Identities=18%  Similarity=0.168  Sum_probs=44.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      .+++|++++|+|+|.+|..-+..|.+.|++|+|++.+.+..+   +.+.  . .-.+.++ .+.++++|+-||.
T Consensus         3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~---~~i~--~-~~~~~~~-~l~~~~lV~~at~   69 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE---GLIQ--L-IRREFEE-DLDGADLVFAATD   69 (103)
T ss_dssp             E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH---TSCE--E-EESS-GG-GCTTESEEEE-SS
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh---hHHH--H-HhhhHHH-HHhhheEEEecCC
Confidence            357899999999999999999999999999999999962111   1111  0 0011222 3566889998874

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.84  E-value=0.0023  Score=64.21  Aligned_cols=119  Identities=13%  Similarity=0.156  Sum_probs=74.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA----RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~----~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .++.|||+|-||.+++..|.+.|.    +|++++|+.++++.+++.++...  ..+..+ ...++|+||-|+++..... 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~--~~~~~e-~~~~aDiIiLavkP~~~~~-   78 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITI--TTNNNE-VANSADILILSIKPDLYSS-   78 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEE--eCCcHH-HHhhCCEEEEEeChHHHHH-
Confidence            479999999999999999998873    69999999999998887776432  122222 2356899999987542211 


Q ss_pred             CCCCCCh--hhhcCCCEEEEEeeCCCchHHHHHHHHCC---CeeeccHHHHHHHHH
Q 010101          444 DQSPVPK--EALKAYELVFDAVYTPRNTRLLREAAEVG---ATVVSGVEMFIRQAL  494 (518)
Q Consensus       444 ~~~~~~~--~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G---~~~i~G~~ml~~Qa~  494 (518)
                         .+..  ..++++.+++|+.-.= ...-++..-...   .++++=....+.++.
T Consensus        79 ---vl~~l~~~~~~~~lvISi~AGi-~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~  130 (272)
T PRK12491         79 ---VINQIKDQIKNDVIVVTIAAGK-SIKSTENEFDRKLKVIRVMPNTPVLVGEGM  130 (272)
T ss_pred             ---HHHHHHHhhcCCcEEEEeCCCC-cHHHHHHhcCCCCcEEEECCChHHHHcCce
Confidence               0111  1245567888887542 222233322111   235555555555543

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.84  E-value=0.004  Score=65.40  Aligned_cols=38  Identities=24%  Similarity=0.363  Sum_probs=35.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      ..+.||++.|||.|.+|+.++..|...|++|.++++..
T Consensus       112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~  149 (381)
T PRK00257        112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPR  149 (381)
T ss_pred             CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcc
Confidence            56889999999999999999999999999999999854

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.83  E-value=0.0021  Score=65.31  Aligned_cols=109  Identities=17%  Similarity=0.206  Sum_probs=70.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV  448 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~  448 (518)
                      ++.|||.|-||.+++..|.+.|++|+++||++. ++++++ .+...  ..+..+ ...++|+||-+.|-.  +.......
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~-~g~~~--~~s~~~-~~~~advVi~~v~~~--~~v~~v~~   74 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLS-LGAVS--VETARQ-VTEASDIIFIMVPDT--PQVEEVLF   74 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHH-cCCee--cCCHHH-HHhcCCEEEEeCCCh--HHHHHHHc
Confidence            588999999999999999999999999999974 555543 33322  112212 235689999888743  11111001


Q ss_pred             Ch----hhhcCCCEEEEEeeC-CCchH-HHHHHHHCCCeeec
Q 010101          449 PK----EALKAYELVFDAVYT-PRNTR-LLREAAEVGATVVS  484 (518)
Q Consensus       449 ~~----~~l~~~~~v~Di~Y~-P~~T~-ll~~A~~~G~~~i~  484 (518)
                      ..    ..+.++.+++|+... |..+. +-+.++++|+.+++
T Consensus        75 ~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd  116 (292)
T PRK15059         75 GENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD  116 (292)
T ss_pred             CCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            11    124567899999876 44343 44666778876555

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.83  E-value=0.0026  Score=61.12  Aligned_cols=74  Identities=18%  Similarity=0.188  Sum_probs=50.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE-RAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~-ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      .+++|++++|+|+|.+|..-+..|.+.|++|+|++.+.. ..+++++..+..++. .+.....+.++++||-||..
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~-~~~~~~dl~~~~lVi~at~d   79 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLA-RCFDADILEGAFLVIAATDD   79 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEe-CCCCHHHhCCcEEEEECCCC
Confidence            467899999999999999999999999999999998754 445565542221110 01111023567888877753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.83  E-value=0.0019  Score=66.75  Aligned_cols=117  Identities=15%  Similarity=0.141  Sum_probs=77.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGA-KSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L-~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..+.|+++.|||.|.+|++++..| ...|++|+.++|+..+..  .. . ...  ..++.+ .+.++|+|+.++|..-. 
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~~-~-~~~--~~~l~e-ll~~aDvIvl~lP~t~~-  213 (332)
T PRK08605        142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--AT-Y-VDY--KDTIEE-AVEGADIVTLHMPATKY-  213 (332)
T ss_pred             ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--Hh-h-ccc--cCCHHH-HHHhCCEEEEeCCCCcc-
Confidence            357899999999999999999999 456889999999865431  11 1 111  123333 34678999999986422 


Q ss_pred             CCCCCCCCh---hhhcCCCEEEEEeeCC-CchHHHHHHHHCCCeeeccHHHH
Q 010101          442 NSDQSPVPK---EALKAYELVFDAVYTP-RNTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       442 ~~~~~~~~~---~~l~~~~~v~Di~Y~P-~~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                        ....+..   +.++++.+++++.=.+ ..|.-+..|-+.|.-.--|++.+
T Consensus       214 --t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~  263 (332)
T PRK08605        214 --NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTY  263 (332)
T ss_pred             --hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecc
Confidence              1122333   2357788999998764 36777777777766544455544

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.80  E-value=0.0021  Score=61.24  Aligned_cols=89  Identities=24%  Similarity=0.214  Sum_probs=60.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYER-AKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQS  446 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~k-a~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~  446 (518)
                      +++.|+|+|-+|.+++..+.+.|++|.|-+|..++ .+..++.++......+ ..+ ....+|+|+-|+|--..+.    
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~-~~d-A~~~aDVVvLAVP~~a~~~----   75 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGS-NED-AAALADVVVLAVPFEAIPD----   75 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCC-hHH-HHhcCCEEEEeccHHHHHh----
Confidence            47899999999999999999999999999776655 4455666654422221 122 3456899999998644332    


Q ss_pred             CCChhhh--cCCCEEEEEe
Q 010101          447 PVPKEAL--KAYELVFDAV  463 (518)
Q Consensus       447 ~~~~~~l--~~~~~v~Di~  463 (518)
                       +..+..  ..+++|+|..
T Consensus        76 -v~~~l~~~~~~KIvID~t   93 (211)
T COG2085          76 -VLAELRDALGGKIVIDAT   93 (211)
T ss_pred             -HHHHHHHHhCCeEEEecC
Confidence             112211  2368888875

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.80  E-value=0.0027  Score=65.44  Aligned_cols=113  Identities=22%  Similarity=0.100  Sum_probs=71.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-------cCc----ccccccccccCCCCccEEEEcCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV-------SGE----ALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~-------~~~----~~~~~~l~~~~~~~~divInatp  436 (518)
                      .++.|||+|.+|.+++..|.+.|.+|++++|+.++++.+.+.-       +..    .....++.+ ....+|+||-++|
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e-~~~~aD~Vi~~v~   83 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEE-ALAGADFAVVAVP   83 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHH-HHcCCCEEEEECc
Confidence            4799999999999999999999999999999999988887542       100    111122322 3456899999887


Q ss_pred             CCCCCCCCCCCCChhhhcCCCEEEEEeeC--CCc--hHHHH-HHHH---CCCeeeccHH
Q 010101          437 IGMEPNSDQSPVPKEALKAYELVFDAVYT--PRN--TRLLR-EAAE---VGATVVSGVE  487 (518)
Q Consensus       437 ~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~--P~~--T~ll~-~A~~---~G~~~i~G~~  487 (518)
                      ....   ..  + ...+++..+++++.-.  |..  +..+. ...+   .|+.++.|-.
T Consensus        84 ~~~~---~~--v-~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~  136 (328)
T PRK14618         84 SKAL---RE--T-LAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPN  136 (328)
T ss_pred             hHHH---HH--H-HHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECcc
Confidence            5421   00  1 0224566788888662  332  22333 3334   5665555543

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.77  E-value=0.0021  Score=67.40  Aligned_cols=71  Identities=14%  Similarity=0.259  Sum_probs=51.8

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcC--cccccc----
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN-------------------YERAKALADAVSG--EALHFE----  418 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt-------------------~~ka~~la~~~~~--~~~~~~----  418 (518)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++                   ..|++.+++.+..  ..+.++    
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~  118 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE  118 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence            567899999999999999999999999 99999976                   3577777666532  111111    


Q ss_pred             -----cccccCCCCccEEEEcCC
Q 010101          419 -----YLHEFFPEKGMILANASA  436 (518)
Q Consensus       419 -----~l~~~~~~~~divInatp  436 (518)
                           ...+ ...++|+||+|+-
T Consensus       119 ~i~~~~~~~-~~~~~DlVid~~D  140 (370)
T PRK05600        119 RLTAENAVE-LLNGVDLVLDGSD  140 (370)
T ss_pred             ecCHHHHHH-HHhCCCEEEECCC
Confidence                 1112 2467899999873

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.76  E-value=0.005  Score=60.89  Aligned_cols=73  Identities=22%  Similarity=0.309  Sum_probs=54.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc--c--cccc---cccc------CCCCccE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA--L--HFEY---LHEF------FPEKGMI  430 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~--~--~~~~---l~~~------~~~~~di  430 (518)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++.+.++...  +  ++.+   +...      .....|+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   83 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC   83 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            46889999988 689999999999999999999999999998887765321  1  1111   1100      1235799


Q ss_pred             EEEcCCC
Q 010101          431 LANASAI  437 (518)
Q Consensus       431 vInatp~  437 (518)
                      +||+...
T Consensus        84 li~~ag~   90 (263)
T PRK06200         84 FVGNAGI   90 (263)
T ss_pred             EEECCCC
Confidence            9998764

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.76  E-value=0.0011  Score=67.85  Aligned_cols=68  Identities=18%  Similarity=0.143  Sum_probs=47.8

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      .+.++++.|+|.|.+|+.++..|...|++|+.++|+.++..... .    .....++.+ .+.++|+|+.+.|.
T Consensus       133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~-~----~~~~~~l~e-~l~~aDvvv~~lPl  200 (312)
T PRK15469        133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ-S----FAGREELSA-FLSQTRVLINLLPN  200 (312)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce-e----ecccccHHH-HHhcCCEEEECCCC
Confidence            46789999999999999999999999999999999765421110 0    011223333 34567777777764

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.75  E-value=0.0032  Score=62.70  Aligned_cols=67  Identities=25%  Similarity=0.246  Sum_probs=53.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC----CeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRG----ARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G----~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      .++.+||+|-||+|++..|.+.|    .+|++.||+.++.+.++++++...  ..+... ...++|+|+-|..+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~--~~~~~~-~~~~advv~LavKP   72 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVT--TTDNQE-AVEEADVVFLAVKP   72 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcc--cCcHHH-HHhhCCEEEEEeCh
Confidence            47899999999999999999999    389999999999999999998662  112112 34567888887754

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.0053  Score=59.70  Aligned_cols=76  Identities=30%  Similarity=0.329  Sum_probs=56.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--cccc---cccc--CCCCccEEEEc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFEY---LHEF--FPEKGMILANA  434 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~~---l~~~--~~~~~divIna  434 (518)
                      .++++++++|.|+ |+.|+.++..|.+.|++|.+++|+.++++++++..+...+  ++.+   +...  .....|+||++
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~   84 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC   84 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence            3467899999998 7899999999999999999999999999888877653321  2221   1110  12347999998


Q ss_pred             CCCC
Q 010101          435 SAIG  438 (518)
Q Consensus       435 tp~g  438 (518)
                      ....
T Consensus        85 ag~~   88 (245)
T PRK07060         85 AGIA   88 (245)
T ss_pred             CCCC
Confidence            8653

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.75  E-value=0.0012  Score=58.50  Aligned_cols=107  Identities=23%  Similarity=0.239  Sum_probs=63.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeE-EEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARV-IIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v-~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      .-++-|||+|.+|.+++.+|.+.|++| -+++|+.+.++.+++.++... .++++    ....+|+++-|+|-..-.   
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~----~~~~aDlv~iavpDdaI~---   82 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEE----ILRDADLVFIAVPDDAIA---   82 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTG----GGCC-SEEEE-S-CCHHH---
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccccccc----ccccCCEEEEEechHHHH---
Confidence            458999999999999999999999954 577999999998888776432 23332    345689999999742110   


Q ss_pred             CCCCChh-----hhcCCCEEEEEeeCCCchHHHHHHHHCCCeee
Q 010101          445 QSPVPKE-----ALKAYELVFDAVYTPRNTRLLREAAEVGATVV  483 (518)
Q Consensus       445 ~~~~~~~-----~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i  483 (518)
                        ++...     .+.++.+|+-.+= -.....|+-++++|+.+.
T Consensus        83 --~va~~La~~~~~~~g~iVvHtSG-a~~~~vL~p~~~~Ga~~~  123 (127)
T PF10727_consen   83 --EVAEQLAQYGAWRPGQIVVHTSG-ALGSDVLAPARERGAIVA  123 (127)
T ss_dssp             --HHHHHHHCC--S-TT-EEEES-S-S--GGGGHHHHHTT-EEE
T ss_pred             --HHHHHHHHhccCCCCcEEEECCC-CChHHhhhhHHHCCCeEE
Confidence              01111     1345667766543 335666788899998653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.74  E-value=0.0021  Score=64.49  Aligned_cols=111  Identities=14%  Similarity=0.166  Sum_probs=71.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQS  446 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~  446 (518)
                      ++.|||.|.+|.+++..|.+.|.  +|++++|++++++.+. ..+... ...+..+  ..++|+||-|+|.......-. 
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-~~g~~~-~~~~~~~--~~~aD~Vilavp~~~~~~~~~-   76 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-ELGLVD-EIVSFEE--LKKCDVIFLAIPVDAIIEILP-   76 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-HCCCCc-ccCCHHH--HhcCCEEEEeCcHHHHHHHHH-
Confidence            58999999999999999999886  7999999998877653 344211 1112222  234899999998753221000 


Q ss_pred             CCChhhhcCCCEEEEEeeCCCchHHHHHHHHC-CCeeeccHHH
Q 010101          447 PVPKEALKAYELVFDAVYTPRNTRLLREAAEV-GATVVSGVEM  488 (518)
Q Consensus       447 ~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~-G~~~i~G~~m  488 (518)
                      .+. . ++++.+|+|+...  ...+.+.+.+. +..++.+-.|
T Consensus        77 ~l~-~-l~~~~iv~d~gs~--k~~i~~~~~~~~~~~~v~~hPm  115 (275)
T PRK08507         77 KLL-D-IKENTTIIDLGST--KAKIIESVPKHIRKNFIAAHPM  115 (275)
T ss_pred             HHh-c-cCCCCEEEECccc--hHHHHHHHHHhcCCCEEecCCc
Confidence            011 1 4567899997553  45555655543 3456666566

>PRK07574 formate dehydrogenase; Provisional

Probab=96.72  E-value=0.0022  Score=67.41  Aligned_cols=71  Identities=13%  Similarity=0.111  Sum_probs=50.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      ..+.|+++.|+|.|.+|++++..|...|++|..++|+... .+..+.++...  ..++++ ...++|+|+.+.|.
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~-~~~~~~~g~~~--~~~l~e-ll~~aDvV~l~lPl  258 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLP-EEVEQELGLTY--HVSFDS-LVSVCDVVTIHCPL  258 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCc-hhhHhhcCcee--cCCHHH-HhhcCCEEEEcCCC
Confidence            3578999999999999999999999999999999998632 22223333221  122333 34567888888875

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.71  E-value=0.0061  Score=64.98  Aligned_cols=98  Identities=22%  Similarity=0.292  Sum_probs=60.4

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-hcCcccccccc--cccCCCCccEEEEcCCCCCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA-VSGEALHFEYL--HEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~-~~~~~~~~~~l--~~~~~~~~divInatp~g~~~  441 (518)
                      +.+++|+|+|-|..|++++..|.++|++|++++.++.. +..... ...+.+.+...  ......++|+||  .++|.  
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV--~SPGi--   79 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLEGIEVELGSHDDEDLAEFDLVV--KSPGI--   79 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhccCceeecCccchhccccCCEEE--ECCCC--
Confidence            44899999999999999999999999999999955433 111111 00011111000  000123345554  22232  


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHH
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIR  491 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~  491 (518)
                                              |..+|++++|+++|.+++..++.+..
T Consensus        80 ------------------------~~~~p~v~~A~~~gi~i~~dieL~~r  105 (448)
T COG0771          80 ------------------------PPTHPLVEAAKAAGIEIIGDIELFYR  105 (448)
T ss_pred             ------------------------CCCCHHHHHHHHcCCcEEeHHHHHHH
Confidence                                    33567888888999888888877654

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.69  E-value=0.0044  Score=63.51  Aligned_cols=66  Identities=23%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      .+.||++.|+|.|.+|++++..+...|.+|..++|+....     ..+..   ..++++ .+.++|+|+.+.|..
T Consensus       142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-----~~~~~---~~~l~e-ll~~sDvv~lh~Plt  207 (311)
T PRK08410        142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-----NEEYE---RVSLEE-LLKTSDIISIHAPLN  207 (311)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc-----ccCce---eecHHH-HhhcCCEEEEeCCCC
Confidence            5789999999999999999999999999999999974221     11111   223333 455688888888753

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.0086  Score=61.85  Aligned_cols=47  Identities=36%  Similarity=0.610  Sum_probs=42.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++++++|.|+ ||+|++++..|++.|++|.+++|+.++.+++++++
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~   51 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEEC   51 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            356899999998 78999999999999999999999999998887765

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.0054  Score=60.34  Aligned_cols=74  Identities=28%  Similarity=0.324  Sum_probs=54.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--cccc---cccc------CCCCccEE
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFEY---LHEF------FPEKGMIL  431 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~~---l~~~------~~~~~div  431 (518)
                      .+++++++|+|+ ||.|++++..|.+.|++|.+++|+.++.+++.+.++...+  ++.+   +...      .....|++
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   83 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIA   83 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            367899999999 7899999999999999999999999888887776643221  1111   1100      12357999


Q ss_pred             EEcCCC
Q 010101          432 ANASAI  437 (518)
Q Consensus       432 Inatp~  437 (518)
                      |++...
T Consensus        84 i~~ag~   89 (255)
T PRK06057         84 FNNAGI   89 (255)
T ss_pred             EECCCc
Confidence            998753

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.67  E-value=0.003  Score=62.20  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      +++++|+|+|+||.|..++..|+..|+ ++++++++
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            457899999999999999999999999 99998864

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.67  E-value=0.031  Score=55.22  Aligned_cols=139  Identities=19%  Similarity=0.231  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEE--------eCC---HHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIF--------NRN---YERAKAL  406 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~--------nRt---~~ka~~l  406 (518)
                      +.|...+++..+...++        .+++++++.|-|.|.+|+.++..|.+.|++|..+        |.+   .+...++
T Consensus        11 g~GV~~~~~~~~~~~~~--------~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~   82 (244)
T PF00208_consen   11 GYGVAYAIEAALEHLGG--------DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRI   82 (244)
T ss_dssp             HHHHHHHHHHHHHHTTC--------HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC--------CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHH
Confidence            57788888776665332        4588999999999999999999999999865443        443   3344444


Q ss_pred             HHHhcCcccccc--------ccc---ccCCCCccEEEEcCCCCCCCCCCCCCCChhhhc-CCCEEEEEeeCCCchHHHHH
Q 010101          407 ADAVSGEALHFE--------YLH---EFFPEKGMILANASAIGMEPNSDQSPVPKEALK-AYELVFDAVYTPRNTRLLRE  474 (518)
Q Consensus       407 a~~~~~~~~~~~--------~l~---~~~~~~~divInatp~g~~~~~~~~~~~~~~l~-~~~~v~Di~Y~P~~T~ll~~  474 (518)
                      .++.+.....+.        -++   +....++||+|-|.--+   .++...++. .++ +.++++.-..+|-..+=.+.
T Consensus        83 ~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~---~I~~~~~~~-~i~~~akiIvegAN~p~t~~a~~~  158 (244)
T PF00208_consen   83 KEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGN---VINEDNAPS-LIKSGAKIIVEGANGPLTPEADEI  158 (244)
T ss_dssp             HHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSST---SBSCHHHCH-CHHTT-SEEEESSSSSBSHHHHHH
T ss_pred             HHHhCCcccccccccccceeEeccccccccccccEEEEcCCCC---eeCHHHHHH-HHhccCcEEEeCcchhccHHHHHH
Confidence            444443111111        011   11124789999774222   222211110 232 35899999999976655666


Q ss_pred             HHHCCCeeeccHHH
Q 010101          475 AAEVGATVVSGVEM  488 (518)
Q Consensus       475 A~~~G~~~i~G~~m  488 (518)
                      -+++|+.+++..--
T Consensus       159 L~~rGI~viPD~~a  172 (244)
T PF00208_consen  159 LRERGILVIPDFLA  172 (244)
T ss_dssp             HHHTT-EEE-HHHH
T ss_pred             HHHCCCEEEcchhh
Confidence            78899998876553

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.66  E-value=0.00093  Score=69.79  Aligned_cols=105  Identities=18%  Similarity=0.063  Sum_probs=74.1

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSR-GARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~-G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      ..++.|||. |.+|++++.+|.+. |++|+.++|..+.              +.+..+ ...++|+||-|+|+......-
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~--------------~~~~~~-~v~~aDlVilavPv~~~~~~l   68 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG--------------SLDPAT-LLQRADVLIFSAPIRHTAALI   68 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc--------------cCCHHH-HhcCCCEEEEeCCHHHHHHHH
Confidence            468999999 99999999999975 6699999985221              111122 346789999999986432100


Q ss_pred             CCCCChh--hhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHH
Q 010101          445 QSPVPKE--ALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       445 ~~~~~~~--~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                      .. +.+.  .++++.+|.|+...  .+..++.+.+.++.++.|-.|+
T Consensus        69 ~~-l~~~~~~l~~~~iVtDVgSv--K~~i~~~~~~~~~~fVG~HPMa  112 (370)
T PRK08818         69 EE-YVALAGGRAAGQLWLDVTSI--KQAPVAAMLASQAEVVGLHPMT  112 (370)
T ss_pred             HH-HhhhhcCCCCCeEEEECCCC--cHHHHHHHHhcCCCEEeeCCCC
Confidence            00 1111  25788999999876  5667788888888889888887

>PRK06196 oxidoreductase; Provisional

Probab=96.66  E-value=0.0068  Score=61.90  Aligned_cols=75  Identities=25%  Similarity=0.359  Sum_probs=54.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-cc--ccccccc---cc------CCCCccE
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG-EA--LHFEYLH---EF------FPEKGMI  430 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~-~~--~~~~~l~---~~------~~~~~di  430 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++++++.. ..  .++.+..   .+      .....|+
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~  102 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDI  102 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCE
Confidence            467899999998 7899999999999999999999999998887766531 11  1222111   10      1245799


Q ss_pred             EEEcCCCC
Q 010101          431 LANASAIG  438 (518)
Q Consensus       431 vInatp~g  438 (518)
                      |||+....
T Consensus       103 li~nAg~~  110 (315)
T PRK06196        103 LINNAGVM  110 (315)
T ss_pred             EEECCCCC
Confidence            99987643

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.65  E-value=0.0041  Score=63.00  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=36.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALA  407 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la  407 (518)
                      +++.|||+|.+|.+++..|+..|.+|++++|++++.+...
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~   44 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGL   44 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            6799999999999999999999999999999998877644

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.64  E-value=0.0051  Score=62.21  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=35.8

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALA  407 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la  407 (518)
                      ++|.|||+|-+|.+++..|+..|.+|++++|+.++.++..
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~   43 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAK   43 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence            5799999999999999999999999999999988766553

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.63  E-value=0.0056  Score=60.52  Aligned_cols=47  Identities=26%  Similarity=0.478  Sum_probs=41.6

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++.+..+
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~   50 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHG   50 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC
Confidence            46789999998 689999999999999999999999999888876544

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PLN03139 formate dehydrogenase; Provisional

Probab=96.63  E-value=0.0026  Score=66.87  Aligned_cols=71  Identities=21%  Similarity=0.216  Sum_probs=50.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      ..+.|+++.|+|.|.+|++++..|...|++|..++|+....+ ..+..+...  .+++.+ ...++|+|+.++|.
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~-~~~~~g~~~--~~~l~e-ll~~sDvV~l~lPl  265 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE-LEKETGAKF--EEDLDA-MLPKCDVVVINTPL  265 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh-hHhhcCcee--cCCHHH-HHhhCCEEEEeCCC
Confidence            357899999999999999999999999999999999853322 223333222  123333 34567888888774

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.0068  Score=60.27  Aligned_cols=73  Identities=25%  Similarity=0.225  Sum_probs=53.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-Ccc--ccccc----------ccccCCCCccE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS-GEA--LHFEY----------LHEFFPEKGMI  430 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~-~~~--~~~~~----------l~~~~~~~~di  430 (518)
                      +++++++|.|+ ||.|++++..|.+.|++|.++.|+.++++++++.++ ...  .++.+          +.+ .....|+
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id~   81 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEA-DLGPIDV   81 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHH-HcCCCCE
Confidence            45789999998 789999999999999999999999999988877665 211  12211          111 1245799


Q ss_pred             EEEcCCCC
Q 010101          431 LANASAIG  438 (518)
Q Consensus       431 vInatp~g  438 (518)
                      +||+...+
T Consensus        82 li~~ag~~   89 (273)
T PRK07825         82 LVNNAGVM   89 (273)
T ss_pred             EEECCCcC
Confidence            99987654

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.62  E-value=0.011  Score=53.39  Aligned_cols=72  Identities=19%  Similarity=0.284  Sum_probs=53.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc------cccc-ccccccCCCCccEEEEcCCCC
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE------ALHF-EYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~------~~~~-~~l~~~~~~~~divInatp~g  438 (518)
                      |+.|+|+ |..|.++++.|...+.  +|.+++++.++++..+.++..-      ...+ ....+ ...++|+||.+....
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~-~~~~aDivvitag~~   80 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYE-ALKDADIVVITAGVP   80 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGG-GGTTESEEEETTSTS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccc-ccccccEEEEecccc
Confidence            6899999 9999999999998886  7999999999988888776421      0011 11122 356799999888654


Q ss_pred             CCC
Q 010101          439 MEP  441 (518)
Q Consensus       439 ~~~  441 (518)
                      ..|
T Consensus        81 ~~~   83 (141)
T PF00056_consen   81 RKP   83 (141)
T ss_dssp             SST
T ss_pred             ccc
Confidence            443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.62  E-value=0.0039  Score=63.85  Aligned_cols=69  Identities=20%  Similarity=0.199  Sum_probs=48.7

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY-ERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~-~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ++++++.|||+|-+|.+++..|...|.+|.+.+|.. ++.+++. +.+....+   ..+ ...++|+|+.++|..
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-~~Gv~~~s---~~e-a~~~ADiVvLaVpp~   70 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-EDGFKVGT---VEE-AIPQADLIMNLLPDE   70 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-HCCCEECC---HHH-HHhcCCEEEEeCCcH
Confidence            357899999999999999999999999887766654 3333333 44443222   222 345689999999864

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.61  E-value=0.0034  Score=62.10  Aligned_cols=36  Identities=19%  Similarity=0.324  Sum_probs=32.5

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      .+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus        29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3567899999999999999999999999 99999754

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.61  E-value=0.0044  Score=60.08  Aligned_cols=70  Identities=20%  Similarity=0.255  Sum_probs=51.7

Q ss_pred             EEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----Ccc----cccccccccCCCCccEEEEcCCCCC
Q 010101          369 IFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS----GEA----LHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       369 ~vlvlG-aGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~----~~~----~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      ++.||| +|.+|.+++..|.+.|.+|++++|+.++++.+++...    ...    ....+..+ ...++|+||-|+|...
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~e-a~~~aDvVilavp~~~   80 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAE-AAKRADVVILAVPWDH   80 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHH-HHhcCCEEEEECCHHH
Confidence            589997 8999999999999999999999999999988876531    100    11111122 3456899999998653

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.61  E-value=0.0048  Score=61.82  Aligned_cols=98  Identities=23%  Similarity=0.263  Sum_probs=70.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----ccccccccCCCCccEEEEcCCCCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~l~~~~~~~~divInatp~g~~  440 (518)
                      ....++.|||.|-+|.-++.-...+|++|+|.+++.+|.++|-..|+....    +...+++ ...++|++|++.=++-.
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee-~v~~aDlvIgaVLIpga  244 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEE-AVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHH-HhhhccEEEEEEEecCC
Confidence            345689999999999999999999999999999999999999888876521    2334444 56789999998743211


Q ss_pred             CCCCCCCCChh---hhcCCCEEEEEeeC
Q 010101          441 PNSDQSPVPKE---ALKAYELVFDAVYT  465 (518)
Q Consensus       441 ~~~~~~~~~~~---~l~~~~~v~Di~Y~  465 (518)
                        ..+..+..+   .++++.+++|+.-.
T Consensus       245 --kaPkLvt~e~vk~MkpGsVivDVAiD  270 (371)
T COG0686         245 --KAPKLVTREMVKQMKPGSVIVDVAID  270 (371)
T ss_pred             --CCceehhHHHHHhcCCCcEEEEEEEc
Confidence              112223333   35677888877643

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.59  E-value=0.0047  Score=67.71  Aligned_cols=45  Identities=27%  Similarity=0.279  Sum_probs=40.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +|+.++|+|+ |++|++++..|++.|++|+++.|+.++++.+++.+
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l  124 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSV  124 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Confidence            5789999998 88999999999999999999999999988876543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.59  E-value=0.0045  Score=63.35  Aligned_cols=90  Identities=21%  Similarity=0.188  Sum_probs=60.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-c---------cc-ccccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG-E---------AL-HFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~-~---------~~-~~~~l~~~~~~~~divInatp~  437 (518)
                      ++.|||+|.+|.+++..|++.|.+|++++|+.++++++.+.... .         .. ...+..+ ...++|+||-|+|.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~~v~~   81 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAE-ALADADLILVAVPS   81 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHH-HHhCCCEEEEeCCH
Confidence            68999999999999999999999999999999998888764210 0         01 1112222 23568999999885


Q ss_pred             CCCCCCCCCCCC--hhhhcCCCEEEEEe
Q 010101          438 GMEPNSDQSPVP--KEALKAYELVFDAV  463 (518)
Q Consensus       438 g~~~~~~~~~~~--~~~l~~~~~v~Di~  463 (518)
                      ...   ... +.  ...+.++.+++++.
T Consensus        82 ~~~---~~v-~~~l~~~~~~~~~vi~~~  105 (325)
T PRK00094         82 QAL---REV-LKQLKPLLPPDAPIVWAT  105 (325)
T ss_pred             HHH---HHH-HHHHHhhcCCCCEEEEEe
Confidence            211   100 10  01235567888885

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.59  E-value=0.0032  Score=61.51  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcCc--cccc-----
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN-------------------YERAKALADAVSGE--ALHF-----  417 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt-------------------~~ka~~la~~~~~~--~~~~-----  417 (518)
                      +.+++|+|+|+||.|..++..|+..|+ +++|++.+                   ..|++.+++.+...  .+.+     
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence            567899999999999999999999999 99998532                   34666666665321  1111     


Q ss_pred             ----ccccccCCCCccEEEEcCC
Q 010101          418 ----EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       418 ----~~l~~~~~~~~divInatp  436 (518)
                          +++.+ ...++|+||+|+.
T Consensus        99 ~i~~~~~~~-~~~~~DvVi~~~d  120 (228)
T cd00757          99 RLDAENAEE-LIAGYDLVLDCTD  120 (228)
T ss_pred             eeCHHHHHH-HHhCCCEEEEcCC
Confidence                11122 2456899999874

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.58  E-value=0.0057  Score=61.12  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=32.9

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      .+++++|+|+|.||+|..++.+|+..|+ +|+|++.+
T Consensus        27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            4678899999999999999999999998 99999865

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.56  E-value=0.011  Score=63.46  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=33.1

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      +.+++++|+|.|++|++++..|.+.|++|++++++..
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            3578999999999999999999999999999987644

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.55  E-value=0.005  Score=61.40  Aligned_cols=68  Identities=21%  Similarity=0.220  Sum_probs=51.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRG---ARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G---~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      .++.|||+|.+|.+++..|.+.|   .+|++++|+.++++++.+.++....  .+..+ ...++|+||-|++..
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~--~~~~~-~~~~advVil~v~~~   73 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAA--TDNQE-AAQEADVVVLAVKPQ   73 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeec--CChHH-HHhcCCEEEEEcCHH
Confidence            46899999999999999999988   5899999999999888876653221  12112 234678888888653

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.55  E-value=0.012  Score=63.55  Aligned_cols=36  Identities=28%  Similarity=0.309  Sum_probs=33.1

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      +.+++++|+|.|++|++++..|.+.|++|++++++.
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            457899999999999999999999999999999864

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=96.53  E-value=0.0016  Score=66.82  Aligned_cols=136  Identities=21%  Similarity=0.279  Sum_probs=90.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCccccccc------ccccCCCCccEEEEcCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEY------LHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~------l~~~~~~~~divInatp~g~  439 (518)
                      +++||++|+|-+++.++..|++.+- +|+|..|+...++++++..+.+.+.++-      |.. ....-|++|.-+|-..
T Consensus         2 ~~~vlllgsg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~-~v~~~D~viSLlP~t~   80 (445)
T KOG0172|consen    2 KKGVLLLGSGFVSRPVADFLSRKKDVNVTVASRTLKDAEALVKGINIKAVSLDVADEELALRK-EVKPLDLVISLLPYTF   80 (445)
T ss_pred             CcceEEecCccccchHHHHHhhcCCceEEEehhhHHHHHHHhcCCCccceEEEccchHHHHHh-hhcccceeeeeccchh
Confidence            4789999999999999999998876 9999999999999999988766554431      222 3456799998888765


Q ss_pred             CCCCCCCCCChhhhcCCCEEEEEeeC-CCchHHHHHHHHCCCe------eeccHHHH-----------HHHHHHHHHHhc
Q 010101          440 EPNSDQSPVPKEALKAYELVFDAVYT-PRNTRLLREAAEVGAT------VVSGVEMF-----------IRQALGQFRLFT  501 (518)
Q Consensus       440 ~~~~~~~~~~~~~l~~~~~v~Di~Y~-P~~T~ll~~A~~~G~~------~i~G~~ml-----------~~Qa~~qf~lw~  501 (518)
                      +|.     +...++....-+.--.|. |.-..|-+.|..+|..      ..+|++-+           ..|-+.+|.-++
T Consensus        81 h~l-----VaK~~i~~~~~~vtsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGidhm~a~~ti~~vh~hgg~i~sf~syc  155 (445)
T KOG0172|consen   81 HPL-----VAKGCIITKEDSVTSSYVDPELEELEKAAVPAGSTIMNEIGLDPGIDHMPAMKTIDLVHEHGGKIKSFKSYC  155 (445)
T ss_pred             hHH-----HHHHHHHhhcccccccccCHHHHhhhhhccCCCceEecccccCcchhhhhhhccchHHHhhcceeeehhhhc
Confidence            543     233333333334444554 3333333344556654      44676644           235577888888


Q ss_pred             C-CCCCHH
Q 010101          502 G-GLAPED  508 (518)
Q Consensus       502 g-~~~p~~  508 (518)
                      | .++|+.
T Consensus       156 Gglpape~  163 (445)
T KOG0172|consen  156 GGLPAPER  163 (445)
T ss_pred             CCccChhh
Confidence            5 466654

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.52  E-value=0.0061  Score=66.99  Aligned_cols=69  Identities=22%  Similarity=0.327  Sum_probs=50.0

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      .+.||++.|+|.|.+|+.++..|...|++|+.++|+....  .+...+....+   +.+ ...++|+|+.+.|..
T Consensus       137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~--~~~~~g~~~~~---l~e-ll~~aDiV~l~lP~t  205 (526)
T PRK13581        137 ELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPE--RAAQLGVELVS---LDE-LLARADFITLHTPLT  205 (526)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh--HHHhcCCEEEc---HHH-HHhhCCEEEEccCCC
Confidence            4679999999999999999999999999999999964321  12233333223   333 345678888888763

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.51  E-value=0.0067  Score=59.17  Aligned_cols=70  Identities=24%  Similarity=0.379  Sum_probs=55.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHHHhcCccc-----ccccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKA-LADAVSGEAL-----HFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~-la~~~~~~~~-----~~~~l~~~~~~~~divInatp~  437 (518)
                      ++++|+|+|-.|+.+|..|.+.|.+|.++.++.+++++ ++.++....+     +.+.|.+..+.++|++|-+|.-
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~   76 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN   76 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence            46899999999999999999999999999999999888 4445553322     2233555457889999988864

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.51  E-value=0.0064  Score=62.10  Aligned_cols=41  Identities=17%  Similarity=0.282  Sum_probs=37.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD  408 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~  408 (518)
                      ++|.|||+|-+|.+++..|++.|++|++++|+.++.+++.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~   45 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARG   45 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence            57999999999999999999999999999999988877655

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.50  E-value=0.0089  Score=61.20  Aligned_cols=79  Identities=27%  Similarity=0.365  Sum_probs=58.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc----c-----cccccccc-------c--
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE----A-----LHFEYLHE-------F--  423 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~----~-----~~~~~l~~-------~--  423 (518)
                      .++.++.++|.|+ .|.|++++..|+.+|++|++.+|+.+++++.++++...    .     .++.++.+       +  
T Consensus        31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~  110 (314)
T KOG1208|consen   31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK  110 (314)
T ss_pred             ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            4567899999988 79999999999999999999999999999999888631    1     12222211       0  


Q ss_pred             CCCCccEEEEcCCCCCCC
Q 010101          424 FPEKGMILANASAIGMEP  441 (518)
Q Consensus       424 ~~~~~divInatp~g~~~  441 (518)
                      ....-|++||...+...|
T Consensus       111 ~~~~ldvLInNAGV~~~~  128 (314)
T KOG1208|consen  111 KEGPLDVLINNAGVMAPP  128 (314)
T ss_pred             cCCCccEEEeCcccccCC
Confidence            134579999977664433

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.48  E-value=0.0048  Score=60.36  Aligned_cols=35  Identities=20%  Similarity=0.366  Sum_probs=32.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      +++++|+|+|.||.|..++.+|+..|+ ++++++.+
T Consensus         9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755           9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            567899999999999999999999999 99999864

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.48  E-value=0.0068  Score=60.20  Aligned_cols=47  Identities=28%  Similarity=0.388  Sum_probs=42.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|.++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   52 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKI   52 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999998 68999999999999999999999999988887665

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.46  E-value=0.013  Score=63.41  Aligned_cols=36  Identities=19%  Similarity=0.151  Sum_probs=32.5

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .+.+|+++|+|.|-.|++++..|.+.|++|++.+-+
T Consensus         5 ~~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~   40 (468)
T PRK04690          5 QLEGRRVALWGWGREGRAAYRALRAHLPAQALTLFC   40 (468)
T ss_pred             hcCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence            356899999999999999999999999999999843

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.43  E-value=0.0077  Score=62.01  Aligned_cols=136  Identities=15%  Similarity=0.148  Sum_probs=78.2

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAK-SRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~-~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      .+.||++.|+|.|.+|++++..|. ..|++|..++|.....  ....++....++++    .+.++|+|+.+.|..-...
T Consensus       142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~--~~~~~~~~~~~l~e----ll~~sDvv~lh~plt~~T~  215 (323)
T PRK15409        142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKE--AEERFNARYCDLDT----LLQESDFVCIILPLTDETH  215 (323)
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchh--hHHhcCcEecCHHH----HHHhCCEEEEeCCCChHHh
Confidence            578999999999999999999997 7899999999874321  11233333223333    3456788877777531100


Q ss_pred             --CC------------------CCCCChh----hhcCC---CEEEEEeeC-C--CchHHHHHHH-----HCCCeeeccHH
Q 010101          443 --SD------------------QSPVPKE----ALKAY---ELVFDAVYT-P--RNTRLLREAA-----EVGATVVSGVE  487 (518)
Q Consensus       443 --~~------------------~~~~~~~----~l~~~---~~v~Di~Y~-P--~~T~ll~~A~-----~~G~~~i~G~~  487 (518)
                        .+                  ...++++    .|..+   ...+|+-+. |  ...||++.-.     -.|..+.+...
T Consensus       216 ~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~  295 (323)
T PRK15409        216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRY  295 (323)
T ss_pred             hccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHH
Confidence              00                  0012221    23333   235787664 3  2455643211     01444455556


Q ss_pred             HHHHHHHHHHHHhc-CCCC
Q 010101          488 MFIRQALGQFRLFT-GGLA  505 (518)
Q Consensus       488 ml~~Qa~~qf~lw~-g~~~  505 (518)
                      -+..+++.++.-|+ |+++
T Consensus       296 ~~~~~~~~ni~~~~~g~~~  314 (323)
T PRK15409        296 NMAACAVDNLIDALQGKVE  314 (323)
T ss_pred             HHHHHHHHHHHHHHcCCCC
Confidence            66777888888776 5443

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.43  E-value=0.002  Score=67.74  Aligned_cols=101  Identities=18%  Similarity=0.180  Sum_probs=64.9

Q ss_pred             CcEEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          367 GKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       367 ~k~vlvlG-aGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      .+++.|+| .|.+|++++.+|.+.|..|++++|+...                +..+ ...++|+||-|+|.......-.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~----------------~~~~-~~~~aDlVilavP~~~~~~~~~  160 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD----------------RAED-ILADAGMVIVSVPIHLTEEVIA  160 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch----------------hHHH-HHhcCCEEEEeCcHHHHHHHHH
Confidence            47899998 8999999999999999999999996320                1111 2346899999999764221000


Q ss_pred             CCCChhhhcCCCEEEEEeeCCCchHHHHHHHHC-CCeeeccHHHH
Q 010101          446 SPVPKEALKAYELVFDAVYTPRNTRLLREAAEV-GATVVSGVEMF  489 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~-G~~~i~G~~ml  489 (518)
                       .+..  ++++.+|.|+...  .+..++++.+. ...++.+-.|+
T Consensus       161 -~l~~--l~~~~iv~Dv~Sv--K~~~~~~~~~~~~~~fvg~HPm~  200 (374)
T PRK11199        161 -RLPP--LPEDCILVDLTSV--KNAPLQAMLAAHSGPVLGLHPMF  200 (374)
T ss_pred             -HHhC--CCCCcEEEECCCc--cHHHHHHHHHhCCCCEEeeCCCC
Confidence             0111  5678899999654  34444444432 22455444443

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.42  E-value=0.0081  Score=61.41  Aligned_cols=48  Identities=35%  Similarity=0.457  Sum_probs=42.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .++++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++.+++
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l   58 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI   58 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4578999999987 68999999999999999999999999888876655

>PRK08223 hypothetical protein; Validated

Probab=96.42  E-value=0.0053  Score=61.73  Aligned_cols=36  Identities=17%  Similarity=0.286  Sum_probs=32.6

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      .+++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus        24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3567899999999999999999999999 99998864

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=96.41  E-value=0.0086  Score=56.21  Aligned_cols=72  Identities=28%  Similarity=0.404  Sum_probs=56.3

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--ccccc--------------ccccccCCCC
Q 010101          365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG--EALHF--------------EYLHEFFPEK  427 (518)
Q Consensus       365 l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~--~~~~~--------------~~l~~~~~~~  427 (518)
                      +..|.++|.|+| |.|||++..|++.|++|.+.+++.+.|++.|..++.  .+..|              ++... .+..
T Consensus        12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k-~~g~   90 (256)
T KOG1200|consen   12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEK-SLGT   90 (256)
T ss_pred             HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHH-hcCC
Confidence            446788899887 899999999999999999999999999999999875  33222              11122 3456


Q ss_pred             ccEEEEcCCC
Q 010101          428 GMILANASAI  437 (518)
Q Consensus       428 ~divInatp~  437 (518)
                      .+++|||...
T Consensus        91 psvlVncAGI  100 (256)
T KOG1200|consen   91 PSVLVNCAGI  100 (256)
T ss_pred             CcEEEEcCcc
Confidence            7999999865

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.41  E-value=0.0082  Score=61.71  Aligned_cols=138  Identities=20%  Similarity=0.308  Sum_probs=83.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..++||++.|+|.|..|++++..++..|++|..++|+..  .+..+.++..+.++++    .+.++|+|+...|..-...
T Consensus       142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~~~~y~~l~e----ll~~sDii~l~~Plt~~T~  215 (324)
T COG1052         142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKELGARYVDLDE----LLAESDIISLHCPLTPETR  215 (324)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhcCceeccHHH----HHHhCCEEEEeCCCChHHh
Confidence            467899999999999999999999988889999999864  2222333333333333    2345677766666531110


Q ss_pred             --CC------------------CCCCChh----hhcCC---CEEEEEeeC-CC--chHHHHHHHH--------CCCeeec
Q 010101          443 --SD------------------QSPVPKE----ALKAY---ELVFDAVYT-PR--NTRLLREAAE--------VGATVVS  484 (518)
Q Consensus       443 --~~------------------~~~~~~~----~l~~~---~~v~Di~Y~-P~--~T~ll~~A~~--------~G~~~i~  484 (518)
                        ++                  ...++++    .|+.+   ...+|+-.. |.  ..+|++....        .++-+..
T Consensus       216 hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~e  295 (324)
T COG1052         216 HLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEE  295 (324)
T ss_pred             hhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHH
Confidence              00                  0012221    12222   346677665 44  4677655542        2455566


Q ss_pred             cHHHHHHHHHHHHHHhc-CCCCC
Q 010101          485 GVEMFIRQALGQFRLFT-GGLAP  506 (518)
Q Consensus       485 G~~ml~~Qa~~qf~lw~-g~~~p  506 (518)
                      ...-+..+++...+-|. |..++
T Consensus       296 a~~~m~~~~~~nl~~~~~g~~~~  318 (324)
T COG1052         296 ARKAMAELALENLEAFFDGGVPP  318 (324)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCC
Confidence            67778888888888777 44443

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.40  E-value=0.0083  Score=60.71  Aligned_cols=38  Identities=32%  Similarity=0.407  Sum_probs=35.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKA  405 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~  405 (518)
                      ++|.|||+|-||+.+|..++..|++|++++++++..+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATA   43 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            47999999999999999999999999999999998776

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=96.38  E-value=0.0093  Score=65.52  Aligned_cols=71  Identities=20%  Similarity=0.329  Sum_probs=50.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ..+.||++.|+|.|.+|++++..|...|++|+.++|+....  .+..++....  +++.+ ...++|+|+.+.|..
T Consensus       134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~--~~~~~g~~~~--~~l~e-ll~~aDvV~l~lPlt  204 (525)
T TIGR01327       134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPE--RAEQLGVELV--DDLDE-LLARADFITVHTPLT  204 (525)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh--HHHhcCCEEc--CCHHH-HHhhCCEEEEccCCC
Confidence            35789999999999999999999999999999999853221  1233343221  22333 345688888888753

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.37  E-value=0.023  Score=61.35  Aligned_cols=99  Identities=26%  Similarity=0.310  Sum_probs=61.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      +++++++|+|.||+|++++..|.++|++|+++++.......|. ..+...   .........++|+||-+.  |..|.  
T Consensus         7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~-~~g~~~---~~~~~~~~~~~d~vv~sp--~i~~~--   78 (460)
T PRK01390          7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAA-AAGITT---ADLRTADWSGFAALVLSP--GVPLT--   78 (460)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHH-hcCccc---cCCChhHHcCCCEEEECC--CCCcc--
Confidence            5688999999999999999999999999999998755433332 223221   111110123467766422  22111  


Q ss_pred             CCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHH
Q 010101          445 QSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIR  491 (518)
Q Consensus       445 ~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~  491 (518)
                                          +|..-+.+..|+++|++++..++.+..
T Consensus        79 --------------------~~~~~~~v~~a~~~gi~i~~~~~~~~~  105 (460)
T PRK01390         79 --------------------HPKPHWVVDLARAAGVEVIGDIELFCR  105 (460)
T ss_pred             --------------------CCcccHHHHHHHHcCCcEEeHHHHHHH
Confidence                                011114667778888888877776543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.36  E-value=0.011  Score=60.54  Aligned_cols=39  Identities=28%  Similarity=0.344  Sum_probs=35.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      ++|.|||+|-+|.+++..|++.|++|++++|++++.+..
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~   41 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAA   41 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHH
Confidence            479999999999999999999999999999998876653

>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]

Probab=96.35  E-value=0.019  Score=56.24  Aligned_cols=113  Identities=21%  Similarity=0.159  Sum_probs=81.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-C-C-eEEEEeCCHHHHHHHHHHhcCcc-------cccccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-G-A-RVIIFNRNYERAKALADAVSGEA-------LHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-G-~-~v~i~nRt~~ka~~la~~~~~~~-------~~~~~l~~~~~~~~divInatp~  437 (518)
                      ....++|+|--|-.-++...+. - . +|.|+||+.+.|+++|+.+....       ...+.++. +...+|||+.||+.
T Consensus       139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~-aV~~sDIIs~atls  217 (333)
T KOG3007|consen  139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNG-AVSNSDIISGATLS  217 (333)
T ss_pred             eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhc-ccccCceEEecccc
Confidence            4567889999888888776544 2 4 89999999999999999775422       12234445 67789999999874


Q ss_pred             CCCCCCCCCCCChhhhcCCCEEEEEe--eCCCchHHHHHHHHCCCeeeccHHH
Q 010101          438 GMEPNSDQSPVPKEALKAYELVFDAV--YTPRNTRLLREAAEVGATVVSGVEM  488 (518)
Q Consensus       438 g~~~~~~~~~~~~~~l~~~~~v~Di~--Y~P~~T~ll~~A~~~G~~~i~G~~m  488 (518)
                      - .|.     +-.+|+.++ .-+|++  |.|..-..-.++-+.+|..+|-.+-
T Consensus       218 t-ePi-----lfgewlkpg-thIdlVGsf~p~mhEcDdelIq~a~vfVDsre~  263 (333)
T KOG3007|consen  218 T-EPI-----LFGEWLKPG-THIDLVGSFKPVMHECDDELIQSACVFVDSREH  263 (333)
T ss_pred             C-Cce-----eeeeeecCC-ceEeeeccCCchHHHHhHHHhhhheEEEecchH
Confidence            2 232     345677775 567886  5577777777777789998887553

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.34  E-value=0.009  Score=61.38  Aligned_cols=39  Identities=26%  Similarity=0.375  Sum_probs=35.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      ++|.|||+|-||+.++..++..|++|++++++++..+.+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~   46 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAAL   46 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999998876554

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.34  E-value=0.01  Score=61.03  Aligned_cols=69  Identities=29%  Similarity=0.388  Sum_probs=52.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccc--c-ccccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFE--Y-LHEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~--~-l~~~~~~~~divInatp  436 (518)
                      .|++++|+|+||.|-.++..++.+|++|+.++|+.+|. ++|++++... +...  + .+. ..+.+|++|++.+
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~-e~a~~lGAd~~i~~~~~~~~~~-~~~~~d~ii~tv~  238 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL-ELAKKLGADHVINSSDSDALEA-VKEIADAIIDTVG  238 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH-HHHHHhCCcEEEEcCCchhhHH-hHhhCcEEEECCC
Confidence            48999999999999998888888999999999999985 6778887653 2221  1 111 1123899999987

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.33  E-value=0.0092  Score=58.61  Aligned_cols=48  Identities=31%  Similarity=0.479  Sum_probs=42.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ++++|+++|.|+ |+.|++++..|.+.|++|.+++|+.++.+++.+.+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~   55 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK   55 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999997 789999999999999999999999988887766653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.32  E-value=0.011  Score=59.72  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=48.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc---------cccccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA---------LHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~---------~~~~~l~~~~~~~~divInatp~  437 (518)
                      ++.|+|+|.+|..++..|.+.|.+|++++|+.++.+.+.+. +...         ....+..+  ...+|+||-||+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAE--LGPQDLVILAVKA   76 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhH--cCCCCEEEEeccc
Confidence            68999999999999999999999999999988887777543 2111         01112222  2568999999874

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.32  E-value=0.0074  Score=60.37  Aligned_cols=74  Identities=26%  Similarity=0.462  Sum_probs=55.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--cc----ccc---ccc-------cccCC
Q 010101          363 SPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG--EA----LHF---EYL-------HEFFP  425 (518)
Q Consensus       363 ~~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~--~~----~~~---~~l-------~~~~~  425 (518)
                      .++.|+.|||-|+| |.||++|..++++|+++.+++.+.+-.++-.+.+..  ++    +++   +++       .+ ..
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~-e~  112 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKK-EV  112 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHH-hc
Confidence            45789999999997 799999999999999999999998877777766652  11    122   222       12 34


Q ss_pred             CCccEEEEcCCC
Q 010101          426 EKGMILANASAI  437 (518)
Q Consensus       426 ~~~divInatp~  437 (518)
                      ...|++||...+
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            578999997654

>PRK07680 late competence protein ComER; Validated

Probab=96.31  E-value=0.007  Score=60.71  Aligned_cols=117  Identities=14%  Similarity=0.073  Sum_probs=71.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHh-cCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA----RVIIFNRNYERAKALADAV-SGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~----~v~i~nRt~~ka~~la~~~-~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      ++.|||+|.+|.+++.+|.+.|.    +|++++|+.++++.+++.+ +...  ..+..+ ...++|+||-|++...... 
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~--~~~~~~-~~~~aDiVilav~p~~~~~-   77 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHV--AKTIEE-VISQSDLIFICVKPLDIYP-   77 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEE--ECCHHH-HHHhCCEEEEecCHHHHHH-
Confidence            58999999999999999998883    6999999999998888765 2221  112212 2356899999986432110 


Q ss_pred             CCCCCCh--hhhcCCCEEEEEeeCCCchHHHHHHH-HCCCeeeccHHHHHHHH
Q 010101          444 DQSPVPK--EALKAYELVFDAVYTPRNTRLLREAA-EVGATVVSGVEMFIRQA  493 (518)
Q Consensus       444 ~~~~~~~--~~l~~~~~v~Di~Y~P~~T~ll~~A~-~~G~~~i~G~~ml~~Qa  493 (518)
                         .+..  ..+.++.+++++.- +....-++... ....+++++...-..++
T Consensus        78 ---vl~~l~~~l~~~~~iis~~a-g~~~~~L~~~~~~~~~r~~p~~~~~~~~G  126 (273)
T PRK07680         78 ---LLQKLAPHLTDEHCLVSITS-PISVEQLETLVPCQVARIIPSITNRALSG  126 (273)
T ss_pred             ---HHHHHHhhcCCCCEEEEECC-CCCHHHHHHHcCCCEEEECCChHHHHhhc
Confidence               0110  12455678888873 33333333222 22346777655433333

>PLN02688 pyrroline-5-carboxylate reductase

Probab=96.30  E-value=0.0081  Score=59.84  Aligned_cols=65  Identities=18%  Similarity=0.192  Sum_probs=48.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA----RVIIF-NRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~----~v~i~-nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      ++.|||.|.||.+++..|.+.|+    +|+++ ||+.++++.+.+ .+...  ..+..+ ...++|+||-|++.
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-~g~~~--~~~~~e-~~~~aDvVil~v~~   71 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-LGVKT--AASNTE-VVKSSDVIILAVKP   71 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-cCCEE--eCChHH-HHhcCCEEEEEECc
Confidence            58899999999999999999886    89999 999999877654 44322  112222 23467999988853

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.0095  Score=58.50  Aligned_cols=47  Identities=32%  Similarity=0.512  Sum_probs=42.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++++++
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   53 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEI   53 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            467899999998 78999999999999999999999999998888766

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.013  Score=57.08  Aligned_cols=72  Identities=21%  Similarity=0.200  Sum_probs=53.3

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc--c--ccccc----------cccCCCCcc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA--L--HFEYL----------HEFFPEKGM  429 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~--~--~~~~l----------~~~~~~~~d  429 (518)
                      +++++++|.|+ |+.|++++..|.+.|++|++++|+.++.+++.++++...  +  ++.+.          .+ .....|
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id   82 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAE-AFGRLD   82 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHH-HhCCCC
Confidence            46789999998 789999999999999999999999888888877765432  1  11111          11 123579


Q ss_pred             EEEEcCCC
Q 010101          430 ILANASAI  437 (518)
Q Consensus       430 ivInatp~  437 (518)
                      ++||+...
T Consensus        83 ~vi~~ag~   90 (249)
T PRK06500         83 AVFINAGV   90 (249)
T ss_pred             EEEECCCC
Confidence            99998754

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.0098  Score=57.87  Aligned_cols=46  Identities=22%  Similarity=0.351  Sum_probs=41.3

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++|+++|.|++ |.|++++..|++.|++|.+++|+.++.+++.+++
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i   49 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQC   49 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            568999999985 7999999999999999999999999988887655

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.27  E-value=0.012  Score=59.60  Aligned_cols=39  Identities=28%  Similarity=0.304  Sum_probs=35.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      ++|.|||+|-||.+++..|+..|++|++++|++++.++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~   42 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNA   42 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence            579999999999999999999999999999999887653

>PRK06487 glycerate dehydrogenase; Provisional

Probab=96.26  E-value=0.0095  Score=61.18  Aligned_cols=37  Identities=35%  Similarity=0.377  Sum_probs=34.1

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .+.||++.|+|.|.+|++++..|...|++|..++|..
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~  181 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPG  181 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC
Confidence            5789999999999999999999999999999999863

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=96.25  E-value=0.025  Score=58.17  Aligned_cols=121  Identities=21%  Similarity=0.248  Sum_probs=79.6

Q ss_pred             cEEEEEccchhH-HHHHHHHHHCC--C-eEEEEeCCHHHHHHHHHHhcCc--ccccccccccCCCCccEEEEcCCCCCCC
Q 010101          368 KIFVLVGAGGAG-RALAFGAKSRG--A-RVIIFNRNYERAKALADAVSGE--ALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       368 k~vlvlGaGg~a-raia~~L~~~G--~-~v~i~nRt~~ka~~la~~~~~~--~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .++.|||+|+.+ +..+.++...+  + -+.+++|+.+++++++++++..  +-+++++-+  ..+.|+|+.+||...+.
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~--~~~iD~V~Iatp~~~H~   81 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLA--DPDIDAVYIATPNALHA   81 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEEcCCChhhH
Confidence            589999999655 56777887765  4 6889999999999999999865  234444322  23479999999976543


Q ss_pred             CCCCCCCChhhhcCCC-EEEEEeeCCC------chHHHHHHHHCCCeeeccHHHHHHHHHHHHH
Q 010101          442 NSDQSPVPKEALKAYE-LVFDAVYTPR------NTRLLREAAEVGATVVSGVEMFIRQALGQFR  498 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~-~v~Di~Y~P~------~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~  498 (518)
                      .     +....|..+. ++++   +|-      -..+++.|+++|..+.-|...-...+....+
T Consensus        82 e-----~~~~AL~aGkhVl~E---KPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k  137 (342)
T COG0673          82 E-----LALAALEAGKHVLCE---KPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALK  137 (342)
T ss_pred             H-----HHHHHHhcCCEEEEc---CCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHH
Confidence            2     2233454443 3322   343      1456677777888877777665554444443

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.25  E-value=0.0085  Score=61.45  Aligned_cols=37  Identities=19%  Similarity=0.291  Sum_probs=34.0

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .+.||++.|+|.|..|++++..|...|++|..++|+.
T Consensus       144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~  180 (314)
T PRK06932        144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG  180 (314)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence            5789999999999999999999999999999998864

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=96.25  E-value=0.095  Score=51.24  Aligned_cols=153  Identities=21%  Similarity=0.243  Sum_probs=88.6

Q ss_pred             CCCHHHHHHHHHHHHhhCCCEEEEEeccCCCCcHHHHHHHhcC--CCCcEEEEeecCCCCCCCCCCcHHHHHHHHHHHhh
Q 010101           17 CETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQH--PTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALD   94 (518)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~D~vElRlD~l~~~~~~~l~~l~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll~~~~~   94 (518)
                      ..++++..   +.+.+.|+|.+=+..-        .+....+.  .+.|++..++...-=|....+ .+....-++.+++
T Consensus        20 ~~d~~~~~---~~~~~~g~~av~v~~~--------~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~-~~~~~~~v~~a~~   87 (235)
T cd00958          20 LEDPEETV---KLAAEGGADAVALTKG--------IARAYGREYAGDIPLIVKLNGSTSLSPKDDN-DKVLVASVEDAVR   87 (235)
T ss_pred             ccCHHHHH---HHHHhcCCCEEEeChH--------HHHhcccccCCCCcEEEEECCCCCCCCCCCC-chhhhcCHHHHHH
Confidence            34455444   4555578888843321        22222211  356788777632111110122 4556666889999


Q ss_pred             cCCcEEEEecCCCCc-------hhhHHHh-hcCCCcEEEEeeecCCCCC---CChhHHHHHHHHHHHcCCCEEEEEcccC
Q 010101           95 LDVEFVEMDYEVASD-------PLMSEII-YSRSNTKIIVSSYLNGGGK---PTTEKLGDVIACMQATGADVMKLEIAVD  163 (518)
Q Consensus        95 ~g~~yvDiEl~~~~~-------~~~~l~~-~~~~~~kiI~S~H~f~~~t---p~~~~l~~~~~~~~~~gadivKia~~~~  163 (518)
                      .|++.||+.++....       .+.++.+ .++.+.++|+--|..+...   .+.+++....+.+.+.|||++|+-.+  
T Consensus        88 ~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~--  165 (235)
T cd00958          88 LGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT--  165 (235)
T ss_pred             CCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC--
Confidence            999999999876431       3344444 3557899999665421111   13355666577788999999999432  


Q ss_pred             CcccHHHHHHHhccCCCCEEEE
Q 010101          164 SITDLAPVFEMLTHCQVPLIAL  185 (518)
Q Consensus       164 ~~~D~~~l~~~~~~~~~p~i~~  185 (518)
                        .|...+.++.+....|++++
T Consensus       166 --~~~~~~~~i~~~~~~pvv~~  185 (235)
T cd00958         166 --GDAESFKEVVEGCPVPVVIA  185 (235)
T ss_pred             --CCHHHHHHHHhcCCCCEEEe
Confidence              25555555555566786554

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.23  E-value=0.014  Score=56.16  Aligned_cols=73  Identities=18%  Similarity=0.191  Sum_probs=51.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY-ERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~-~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      .+++||+|+|+|+|..|.-=+..|.+.|++|+|++.+. +..+.+++..+..++. .....-....+++||-||+
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~~~~lviaAt~   81 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLDDAFLVIAATD   81 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhcCceEEEEeCC
Confidence            56889999999999999999999999999999999887 5555555554422222 1111102234788887775

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.21  E-value=0.01  Score=60.99  Aligned_cols=40  Identities=35%  Similarity=0.506  Sum_probs=35.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      ..+.||++.|||.|..|+.++..|...|.+|..+++...+
T Consensus       138 ~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~  177 (324)
T COG0111         138 TELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPR  177 (324)
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCch
Confidence            4577999999999999999999999999999999994333

>PLN02477 glutamate dehydrogenase

Probab=96.21  E-value=0.055  Score=57.32  Aligned_cols=129  Identities=21%  Similarity=0.294  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRN----------YERAKAL  406 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~-i~nRt----------~~ka~~l  406 (518)
                      +.|...+++..++. .|        .+++|++++|.|.|.+|+.++..|.+.|++|+ |.+.+          .+...+.
T Consensus       186 g~Gv~~~~~~~~~~-~g--------~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~  256 (410)
T PLN02477        186 GRGVVFATEALLAE-HG--------KSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKH  256 (410)
T ss_pred             hHHHHHHHHHHHHH-cC--------CCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHH
Confidence            67777777776654 23        47889999999999999999999999999766 87776          5655444


Q ss_pred             HHHhcC-------cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhh--cCCCEEEEEeeCCCchHHHHHH-H
Q 010101          407 ADAVSG-------EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEAL--KAYELVFDAVYTPRNTRLLREA-A  476 (518)
Q Consensus       407 a~~~~~-------~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l--~~~~~v~Di~Y~P~~T~ll~~A-~  476 (518)
                      .++-+.       +.++-+++   ...++||+|-|.--+   .     +..+..  -...+|+.-.-+|- |+=..+. +
T Consensus       257 k~~~g~l~~~~~a~~i~~~e~---l~~~~DvliP~Al~~---~-----I~~~na~~i~ak~I~egAN~p~-t~ea~~~L~  324 (410)
T PLN02477        257 VAEGGGLKGFPGGDPIDPDDI---LVEPCDVLIPAALGG---V-----INKENAADVKAKFIVEAANHPT-DPEADEILR  324 (410)
T ss_pred             HHhcCchhccccceEecCccc---eeccccEEeeccccc---c-----CCHhHHHHcCCcEEEeCCCCCC-CHHHHHHHH
Confidence            333221       11111221   124689998654222   2     222211  14578999988887 6544433 6


Q ss_pred             HCCCeeeccHH
Q 010101          477 EVGATVVSGVE  487 (518)
Q Consensus       477 ~~G~~~i~G~~  487 (518)
                      ++|+.+++..-
T Consensus       325 ~rGI~~~PD~~  335 (410)
T PLN02477        325 KKGVVVLPDIY  335 (410)
T ss_pred             HCCcEEEChHH
Confidence            67887776554

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.21  E-value=0.019  Score=57.48  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=50.4

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCc-c--cccccc----------cccCC
Q 010101          365 IAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNY---ERAKALADAVSGE-A--LHFEYL----------HEFFP  425 (518)
Q Consensus       365 l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~---~ka~~la~~~~~~-~--~~~~~l----------~~~~~  425 (518)
                      +++|.++|.|+   +|.|++++..|++.|++|+++.|+.   +++++++++++.. .  .++.+.          .+ ..
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~-~~   81 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKK-DL   81 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHH-Hc
Confidence            45799999998   4999999999999999999999984   4556666655432 1  112111          11 12


Q ss_pred             CCccEEEEcCCC
Q 010101          426 EKGMILANASAI  437 (518)
Q Consensus       426 ~~~divInatp~  437 (518)
                      ...|++||+...
T Consensus        82 g~iDilVnnAG~   93 (274)
T PRK08415         82 GKIDFIVHSVAF   93 (274)
T ss_pred             CCCCEEEECCcc
Confidence            457999998754

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.19  E-value=0.02  Score=57.18  Aligned_cols=73  Identities=16%  Similarity=0.161  Sum_probs=51.2

Q ss_pred             ccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCcc---ccccc---c-------cccC
Q 010101          364 PIAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNY---ERAKALADAVSGEA---LHFEY---L-------HEFF  424 (518)
Q Consensus       364 ~l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~---~ka~~la~~~~~~~---~~~~~---l-------~~~~  424 (518)
                      -+++|.++|.|+   +|.|++++..|++.|++|+++.|+.   +++++++++++...   .++.+   +       .+ .
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~-~   85 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEK-K   85 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHH-h
Confidence            457899999998   5999999999999999999988873   56666766655211   11111   1       11 2


Q ss_pred             CCCccEEEEcCCC
Q 010101          425 PEKGMILANASAI  437 (518)
Q Consensus       425 ~~~~divInatp~  437 (518)
                      ....|++||+...
T Consensus        86 ~g~iD~lv~nAG~   98 (272)
T PRK08159         86 WGKLDFVVHAIGF   98 (272)
T ss_pred             cCCCcEEEECCcc
Confidence            2457999998754

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.19  E-value=0.011  Score=64.44  Aligned_cols=40  Identities=20%  Similarity=0.241  Sum_probs=36.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALA  407 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la  407 (518)
                      ++|.|||+|-||.+++..|+..|++|+++||++++.+.+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~   44 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIG   44 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            4799999999999999999999999999999999887654

>PLN02858 fructose-bisphosphate aldolase

Probab=96.18  E-value=0.0081  Score=72.82  Aligned_cols=106  Identities=13%  Similarity=0.076  Sum_probs=71.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      .+++-+||.|-||..++..|.+.|++|+++||+.++++++++. |... -+..+    ...++|+||-+.|-+-  ....
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~-Ga~~~~s~~e----~a~~advVi~~l~~~~--~v~~   76 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCEL-GGHRCDSPAE----AAKDAAALVVVLSHPD--QVDD   76 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc-CCeecCCHHH----HHhcCCEEEEEcCChH--HHHH
Confidence            4679999999999999999999999999999999999998864 3322 12222    2346899997765431  1111


Q ss_pred             CCCCh----hhhcCCCEEEEEeeC-CCch-HHHHHHHHCC
Q 010101          446 SPVPK----EALKAYELVFDAVYT-PRNT-RLLREAAEVG  479 (518)
Q Consensus       446 ~~~~~----~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G  479 (518)
                      ..+..    ..+.++.+++|+... |..+ .+.+.++++|
T Consensus        77 V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g  116 (1378)
T PLN02858         77 VFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK  116 (1378)
T ss_pred             HHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence            11111    124567899999876 4444 3444556677

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.012  Score=58.14  Aligned_cols=47  Identities=30%  Similarity=0.440  Sum_probs=42.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+.+++++++++++
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG   51 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC
Confidence            56899999997 789999999999999999999999998888887765

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.15  E-value=0.025  Score=60.25  Aligned_cols=100  Identities=18%  Similarity=0.144  Sum_probs=64.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----------------ccccc-ccccccCCCCccEE
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG----------------EALHF-EYLHEFFPEKGMIL  431 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~----------------~~~~~-~~l~~~~~~~~div  431 (518)
                      ++.|||.|-+|.+++..|++.|++|++++|+.++.+.+.+....                ....+ .+..+ ...++|+|
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~-~~~~advv   80 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYED-AIRDADVI   80 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHH-HHhhCCEE
Confidence            58999999999999999999999999999999999887642100                00111 12222 24578999


Q ss_pred             EEcCCCCCCCCC--CCCCCC---h---hhhcCCCEEEEEeeCCCch
Q 010101          432 ANASAIGMEPNS--DQSPVP---K---EALKAYELVFDAVYTPRNT  469 (518)
Q Consensus       432 Inatp~g~~~~~--~~~~~~---~---~~l~~~~~v~Di~Y~P~~T  469 (518)
                      |-|+|.......  +-..+.   .   ..++++.+++|....|..|
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt  126 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGT  126 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCc
Confidence            999886533210  000011   1   1245678899987665544

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.15  E-value=0.02  Score=57.01  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=32.2

Q ss_pred             cCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCC
Q 010101          365 IAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       365 l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt  399 (518)
                      +++|.++|.|++   |.|++++..|++.|++|.++.|+
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            568999999986   89999999999999999999997

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.013  Score=57.75  Aligned_cols=48  Identities=31%  Similarity=0.421  Sum_probs=42.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++.+++++++.
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~   52 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIA   52 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            367899999987 689999999999999999999999999888877763

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.13  E-value=0.023  Score=61.30  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=30.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      .+++++|+|.|..|++++..|.+ |++|++++...+
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~   39 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKA   39 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCC
Confidence            47899999999999999999995 999999996543

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.13  E-value=0.017  Score=59.37  Aligned_cols=74  Identities=20%  Similarity=0.262  Sum_probs=55.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc-------cccccccccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA-------LHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~-------~~~~~l~~~~~~~~divInatp  436 (518)
                      .++++.|+|+|.+|.++++.|...|.  +|.+++++.++++..+.++....       +...+.+  ...++|+||.+..
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~--~~~~adivIitag   82 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYS--DCKDADLVVITAG   82 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHH--HhCCCCEEEEecC
Confidence            35799999999999999999998887  89999999999888877665211       1111222  3577999998776


Q ss_pred             CCCCC
Q 010101          437 IGMEP  441 (518)
Q Consensus       437 ~g~~~  441 (518)
                      ..-.|
T Consensus        83 ~~~k~   87 (315)
T PRK00066         83 APQKP   87 (315)
T ss_pred             CCCCC
Confidence            54333

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.13  E-value=0.012  Score=62.57  Aligned_cols=74  Identities=27%  Similarity=0.346  Sum_probs=50.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--ccc--cccc---ccccCCCCccEEEEcC
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG--EAL--HFEY---LHEFFPEKGMILANAS  435 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~--~~~--~~~~---l~~~~~~~~divInat  435 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++.++.......  ..+  ++.+   +.+ ...+.|++||+.
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~-~l~~IDiLInnA  253 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAE-LLEKVDILIINH  253 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHH-HhCCCCEEEECC
Confidence            456899999998 7899999999999999999999998766543322111  111  1111   222 235689999876


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      ..+
T Consensus       254 Gi~  256 (406)
T PRK07424        254 GIN  256 (406)
T ss_pred             CcC
Confidence            543

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.11  E-value=0.013  Score=57.41  Aligned_cols=48  Identities=33%  Similarity=0.463  Sum_probs=42.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++.+++.+++.
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~   54 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLR   54 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH
Confidence            467899999987 689999999999999999999999998888876653

>PLN02858 fructose-bisphosphate aldolase

Probab=96.10  E-value=0.019  Score=69.80  Aligned_cols=111  Identities=14%  Similarity=0.025  Sum_probs=73.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQS  446 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~  446 (518)
                      .+++-+||.|-||.+++..|...|++|+++||+.++++.+++.......+..+    ...++|+||-+.|-.-  .....
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e----~~~~aDvVi~~V~~~~--~v~~V  397 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAE----VAKDVDVLVIMVANEV--QAENV  397 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHH----HHhcCCEEEEecCChH--HHHHH
Confidence            37899999999999999999999999999999999998887652111112222    2356899998877321  00000


Q ss_pred             CCC-h---hhhcCCCEEEEEeeC-CCch-HHHHHHHH--CCCeee
Q 010101          447 PVP-K---EALKAYELVFDAVYT-PRNT-RLLREAAE--VGATVV  483 (518)
Q Consensus       447 ~~~-~---~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~--~G~~~i  483 (518)
                      .+. .   ..+.++.+++|+... |..+ .+-+.+++  +|+.++
T Consensus       398 l~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~l  442 (1378)
T PLN02858        398 LFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLV  442 (1378)
T ss_pred             HhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEE
Confidence            011 1   124567899999876 5444 34455566  665544

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.01  Score=58.58  Aligned_cols=74  Identities=24%  Similarity=0.259  Sum_probs=48.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--ccc---cccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFE---YLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~---~l~~~~~~~~divInatp  436 (518)
                      ..+++++++|.|+ ||.|++++..|++.|++|++++|+.....+....-....+  ++.   ++.+ .....|++||+..
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~iDilVnnAG   88 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDK-QLASLDVLILNHG   88 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHH-hcCCCCEEEECCc
Confidence            4567899999998 6899999999999999999999986322111111111111  111   1222 3456899999875


Q ss_pred             C
Q 010101          437 I  437 (518)
Q Consensus       437 ~  437 (518)
                      .
T Consensus        89 ~   89 (245)
T PRK12367         89 I   89 (245)
T ss_pred             c
Confidence            4

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.10  E-value=0.007  Score=61.84  Aligned_cols=35  Identities=34%  Similarity=0.461  Sum_probs=32.3

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      +.++.|||+|-+|++++..|.+.|++|++++|+..
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            56899999999999999999999999999999853

>PRK06182 short chain dehydrogenase; Validated

Probab=96.10  E-value=0.012  Score=58.49  Aligned_cols=71  Identities=23%  Similarity=0.260  Sum_probs=50.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--cccc---cccc------CCCCccEEEEc
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFEY---LHEF------FPEKGMILANA  434 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~~---l~~~------~~~~~divIna  434 (518)
                      +++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++... +...+  ++.+   +...      .....|++||+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~   81 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL-GVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN   81 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC-CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            678999997 7899999999999999999999999988776542 22111  1111   1110      12357999998


Q ss_pred             CCCC
Q 010101          435 SAIG  438 (518)
Q Consensus       435 tp~g  438 (518)
                      ...+
T Consensus        82 ag~~   85 (273)
T PRK06182         82 AGYG   85 (273)
T ss_pred             CCcC
Confidence            7654

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.02  Score=56.29  Aligned_cols=48  Identities=29%  Similarity=0.416  Sum_probs=42.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++++++|+|+ |+.|++++..|.+.|++|++++|+.+..+++.+.++
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~   56 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP   56 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence            367899999998 679999999999999999999999988888776653

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.10  E-value=0.065  Score=56.08  Aligned_cols=135  Identities=19%  Similarity=0.161  Sum_probs=88.2

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH------------------HHHHHHHHhcCcccccccccccC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE------------------RAKALADAVSGEALHFEYLHEFF  424 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~------------------ka~~la~~~~~~~~~~~~l~~~~  424 (518)
                      ..++|++|.|-|.|-+|+-++..|.+.|++|+.++-+..                  +.+.+++.++.+.++-+++-   
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~---  279 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELL---  279 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccc---
Confidence            348999999999999999999999999999888887666                  55556666555544444432   


Q ss_pred             CCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHH---------HHHHHHHH
Q 010101          425 PEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVE---------MFIRQALG  495 (518)
Q Consensus       425 ~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~---------ml~~Qa~~  495 (518)
                      ..++||++-|.--+   .++..  ....|+. .+|..-.-+|....-.+.-.++|+-++++.-         -|-++.-.
T Consensus       280 ~~~cDIl~PcA~~n---~I~~~--na~~l~a-k~V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~  353 (411)
T COG0334         280 EVDCDILIPCALEN---VITED--NADQLKA-KIVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNA  353 (411)
T ss_pred             cccCcEEccccccc---ccchh--hHHHhhh-cEEEeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHHhhc
Confidence            24689998554322   11111  1123444 4888988888776666666788877666543         23334455


Q ss_pred             HHHHhcCCCCC
Q 010101          496 QFRLFTGGLAP  506 (518)
Q Consensus       496 qf~lw~g~~~p  506 (518)
                      |-..|+-.++.
T Consensus       354 ~~~~wt~eev~  364 (411)
T COG0334         354 QGLYWTEEEVD  364 (411)
T ss_pred             ccCccCHHHHH
Confidence            56667755444

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=96.10  E-value=0.011  Score=59.54  Aligned_cols=45  Identities=33%  Similarity=0.525  Sum_probs=41.2

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       367 ~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      |+=++|.||+ |.||+-+..|+++|.+|++++||++|.+++++++.
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~   94 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIE   94 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            4668899985 89999999999999999999999999999998885

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.09  E-value=0.012  Score=60.45  Aligned_cols=45  Identities=24%  Similarity=0.559  Sum_probs=41.3

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .|+.++|.|| ||.|++++..|++.|++|.+++|+.++.+++++++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l   97 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI   97 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Confidence            5899999998 68999999999999999999999999999888765

>PRK12742 oxidoreductase; Provisional

Probab=96.08  E-value=0.021  Score=55.28  Aligned_cols=73  Identities=22%  Similarity=0.236  Sum_probs=51.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHhcCccc--cccc---cccc--CCCCccEEEEcC
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-NYERAKALADAVSGEAL--HFEY---LHEF--FPEKGMILANAS  435 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-t~~ka~~la~~~~~~~~--~~~~---l~~~--~~~~~divInat  435 (518)
                      +++|+++|.|+ ||.|++++..|.+.|++|.+..| +.++.+++.++++....  ++.+   +...  .....|++||+.
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~a   83 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNA   83 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECC
Confidence            56899999997 78999999999999998877654 67778888776654322  2211   1110  123479999987


Q ss_pred             CC
Q 010101          436 AI  437 (518)
Q Consensus       436 p~  437 (518)
                      ..
T Consensus        84 g~   85 (237)
T PRK12742         84 GI   85 (237)
T ss_pred             CC
Confidence            54

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=96.07  E-value=0.2  Score=47.61  Aligned_cols=129  Identities=16%  Similarity=0.154  Sum_probs=84.9

Q ss_pred             ceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcHHHHHHHhcC-CCCcEEEEeecCCCCCCCCCCcHHHHH
Q 010101            9 LLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQH-PTLPAIVSYRLKSSRKSSDEACKNTCL   86 (518)
Q Consensus         9 ~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~   86 (518)
                      +.||+.|-..+.++...-++.... +++.+|+-+.+.. ... +.++.+++. .+.|++...-..       .. . .  
T Consensus         1 ~~~~~a~d~~~~~~~~~~~~~l~~-~i~~ieig~~~~~~~g~-~~i~~i~~~~~~~~i~~~~~v~-------~~-~-~--   67 (202)
T cd04726           1 PLLQVALDLLDLEEALELAKKVPD-GVDIIEAGTPLIKSEGM-EAVRALREAFPDKIIVADLKTA-------DA-G-A--   67 (202)
T ss_pred             CceEEEEcCCCHHHHHHHHHHhhh-cCCEEEcCCHHHHHhCH-HHHHHHHHHCCCCEEEEEEEec-------cc-c-H--
Confidence            468999999999999988777554 4999999666554 222 467778765 588998865432       11 1 1  


Q ss_pred             HHHHHHhhcCCcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEE
Q 010101           87 QVLRRALDLDVEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKL  158 (518)
Q Consensus        87 ~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKi  158 (518)
                      ..++.+.+.|++++=+-.....+...++.+ .++.+.++++.-++.  .||  ++..   + +...|+|++++
T Consensus        68 ~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~--~t~--~e~~---~-~~~~~~d~v~~  132 (202)
T cd04726          68 LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGV--EDP--EKRA---K-LLKLGVDIVIL  132 (202)
T ss_pred             HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCC--CCH--HHHH---H-HHHCCCCEEEE
Confidence            234777889999988766554333344444 445678888865643  333  2332   2 56679999998

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.015  Score=57.06  Aligned_cols=46  Identities=30%  Similarity=0.468  Sum_probs=41.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~   50 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEI   50 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56789999987 68999999999999999999999999988887765

>PLN02306 hydroxypyruvate reductase

Probab=96.05  E-value=0.015  Score=61.18  Aligned_cols=75  Identities=13%  Similarity=0.149  Sum_probs=50.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHHhcC----------cccccccccccCCCCccE
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAK-SRGARVIIFNRNYERA-KALADAVSG----------EALHFEYLHEFFPEKGMI  430 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~-~~G~~v~i~nRt~~ka-~~la~~~~~----------~~~~~~~l~~~~~~~~di  430 (518)
                      ..+.|+++.|+|.|.+|++++..|. ..|++|..++|+.... +.....++.          ......++++ .+.++|+
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~e-ll~~sDi  239 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEE-VLREADV  239 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHH-HHhhCCE
Confidence            3578999999999999999999985 7899999999976421 111112221          0000123444 4567899


Q ss_pred             EEEcCCCC
Q 010101          431 LANASAIG  438 (518)
Q Consensus       431 vInatp~g  438 (518)
                      |+.++|..
T Consensus       240 V~lh~Plt  247 (386)
T PLN02306        240 ISLHPVLD  247 (386)
T ss_pred             EEEeCCCC
Confidence            98888763

>PRK05717 oxidoreductase; Validated

Probab=96.05  E-value=0.018  Score=56.62  Aligned_cols=49  Identities=24%  Similarity=0.379  Sum_probs=43.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ..+++|+++|.|+ |+.|++++..|.+.|++|.+++|+.++++++++.++
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~   55 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALG   55 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcC
Confidence            4678999999997 789999999999999999999999988888777665

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.02  E-value=0.037  Score=60.47  Aligned_cols=36  Identities=25%  Similarity=0.443  Sum_probs=32.4

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      +.+++++|+|.|++|++++..|.++|++|++++...
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            457899999999999999999999999999999653

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.019  Score=56.26  Aligned_cols=48  Identities=31%  Similarity=0.494  Sum_probs=43.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .++++++++|.|+ ||.|++++..|.+.|++|+++.|+.++++++.+.+
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l   53 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEI   53 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4577899999997 78999999999999999999999999988887765

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.00  E-value=0.024  Score=58.83  Aligned_cols=70  Identities=19%  Similarity=0.242  Sum_probs=51.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHHhcCccccccc--ccc-cCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNR---NYERAKALADAVSGEALHFEY--LHE-FFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nR---t~~ka~~la~~~~~~~~~~~~--l~~-~~~~~~divInatp  436 (518)
                      .+++++|+|+|++|..++..++..|++|++++|   +++|. +++++++...+...+  +.+ .....+|++|+++.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~-~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g  247 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKA-DIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATG  247 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHHcCCEEecCCccchhhhhhcCCCCEEEECcC
Confidence            578999999999999999888899999999998   45554 477788865432221  100 01235899999986

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.99  E-value=0.017  Score=56.29  Aligned_cols=47  Identities=34%  Similarity=0.574  Sum_probs=41.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +++++++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++...+.
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEIL   50 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence            46789999998 789999999999999999999999998888776654

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=95.98  E-value=0.24  Score=47.65  Aligned_cols=145  Identities=14%  Similarity=0.093  Sum_probs=86.7

Q ss_pred             eEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCCCCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHHHHHH
Q 010101           10 LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVL   89 (518)
Q Consensus        10 ~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll   89 (518)
                      .++..+...+.+++...++.+...|+.++|+|.+.-.  ..+.+..+++..+.++++=.     |...  +  .+   -+
T Consensus        11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~--~~~~i~~l~~~~~~~~~iGa-----GTV~--~--~~---~~   76 (206)
T PRK09140         11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPD--PFDSIAALVKALGDRALIGA-----GTVL--S--PE---QV   76 (206)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCcc--HHHHHHHHHHHcCCCcEEeE-----EecC--C--HH---HH
Confidence            4666789999999999999999999999999975432  23467777765554544322     1111  1  22   23


Q ss_pred             HHHhhcCCcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccCCcccH
Q 010101           90 RRALDLDVEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDL  168 (518)
Q Consensus        90 ~~~~~~g~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~  168 (518)
                      +.+.+.|++++=.--..     ..+.+ .+..+.-++.+-|+.       +|    +.++.+.|+|++|+  .|.+.--.
T Consensus        77 ~~a~~aGA~fivsp~~~-----~~v~~~~~~~~~~~~~G~~t~-------~E----~~~A~~~Gad~vk~--Fpa~~~G~  138 (206)
T PRK09140         77 DRLADAGGRLIVTPNTD-----PEVIRRAVALGMVVMPGVATP-------TE----AFAALRAGAQALKL--FPASQLGP  138 (206)
T ss_pred             HHHHHcCCCEEECCCCC-----HHHHHHHHHCCCcEEcccCCH-------HH----HHHHHHcCCCEEEE--CCCCCCCH
Confidence            56778888886543221     12222 334677788886632       23    35566789999997  34332222


Q ss_pred             HHHHHHhccC--CCCEEEEe
Q 010101          169 APVFEMLTHC--QVPLIALA  186 (518)
Q Consensus       169 ~~l~~~~~~~--~~p~i~~~  186 (518)
                      ..+-.+....  .+|+++++
T Consensus       139 ~~l~~l~~~~~~~ipvvaiG  158 (206)
T PRK09140        139 AGIKALRAVLPPDVPVFAVG  158 (206)
T ss_pred             HHHHHHHhhcCCCCeEEEEC
Confidence            2222232222  36776654

>PRK09414 glutamate dehydrogenase; Provisional

Probab=95.97  E-value=0.11  Score=55.73  Aligned_cols=133  Identities=20%  Similarity=0.198  Sum_probs=83.2

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEE-e----------CCHHHHHH
Q 010101          337 DCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIF-N----------RNYERAKA  405 (518)
Q Consensus       337 D~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~-n----------Rt~~ka~~  405 (518)
                      -+.|...+++..+... +        .+++|+++.|.|.|.+|+.++..|.+.|++|+.+ +          -+.+...+
T Consensus       211 Tg~Gv~~~~~~~~~~~-~--------~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~  281 (445)
T PRK09414        211 TGYGLVYFAEEMLKAR-G--------DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKE  281 (445)
T ss_pred             ccHHHHHHHHHHHHhc-C--------CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHH
Confidence            3667777777655542 2        5688999999999999999999999999976655 5          35665544


Q ss_pred             HHHHhc-----------CcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhc--CCCEEEEEeeCCCchHHH
Q 010101          406 LADAVS-----------GEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALK--AYELVFDAVYTPRNTRLL  472 (518)
Q Consensus       406 la~~~~-----------~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~--~~~~v~Di~Y~P~~T~ll  472 (518)
                      ..+.-+           .+.++-+++   ...++||+|-|+.-+.   ++...  ...+.  ...+|+.-.-+|- |+--
T Consensus       282 ~k~~~~~~l~~~~~~~~~~~i~~~~i---~~~d~DVliPaAl~n~---It~~~--a~~i~~~~akiIvEgAN~p~-t~~A  352 (445)
T PRK09414        282 IKEVRRGRISEYAEEFGAEYLEGGSP---WSVPCDIALPCATQNE---LDEED--AKTLIANGVKAVAEGANMPS-TPEA  352 (445)
T ss_pred             HHHhcCCchhhhhhhcCCeecCCccc---cccCCcEEEecCCcCc---CCHHH--HHHHHHcCCeEEEcCCCCCC-CHHH
Confidence            433221           111111111   2246899998875432   12111  12242  4578999998887 5443


Q ss_pred             H-HHHHCCCeeeccHH
Q 010101          473 R-EAAEVGATVVSGVE  487 (518)
Q Consensus       473 ~-~A~~~G~~~i~G~~  487 (518)
                      . .-+++|+.+++..-
T Consensus       353 ~~~L~~rGI~~vPD~l  368 (445)
T PRK09414        353 IEVFLEAGVLFAPGKA  368 (445)
T ss_pred             HHHHHHCCcEEECchh
Confidence            3 33668887776554

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.97  E-value=0.013  Score=50.67  Aligned_cols=106  Identities=24%  Similarity=0.264  Sum_probs=71.3

Q ss_pred             EEEEEccchhHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSR--GAR-VIIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~--G~~-v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      ++.|||+|..|+.-..++...  +.+ +.|++++.++++++++.++... -+++++-+  ..+.|+|+.+||......  
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~D~V~I~tp~~~h~~--   77 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLA--DEDVDAVIIATPPSSHAE--   77 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHH--HTTESEEEEESSGGGHHH--
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHH--hhcCCEEEEecCCcchHH--
Confidence            689999999999999888877  345 5699999999999999988652 23443322  136899999998653321  


Q ss_pred             CCCCChhhhcCC-CEEEEEeeCCC------chHHHHHHHHCCCeeec
Q 010101          445 QSPVPKEALKAY-ELVFDAVYTPR------NTRLLREAAEVGATVVS  484 (518)
Q Consensus       445 ~~~~~~~~l~~~-~~v~Di~Y~P~------~T~ll~~A~~~G~~~i~  484 (518)
                         +-...+..+ .+++|   +|.      -..+++.+++.|..+.=
T Consensus        78 ---~~~~~l~~g~~v~~E---KP~~~~~~~~~~l~~~a~~~~~~~~V  118 (120)
T PF01408_consen   78 ---IAKKALEAGKHVLVE---KPLALTLEEAEELVEAAKEKGVKVMV  118 (120)
T ss_dssp             ---HHHHHHHTTSEEEEE---SSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred             ---HHHHHHHcCCEEEEE---cCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence               223344443 33433   444      25667777888877643

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=95.96  E-value=0.017  Score=57.88  Aligned_cols=49  Identities=33%  Similarity=0.548  Sum_probs=43.7

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ..+.+|.++|.|+. |.|+++|..|+++|++|+|+.|+.++.++.++.+.
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~   53 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELG   53 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            45789999999885 89999999999999999999999999888877653

>PRK09242 tropinone reductase; Provisional

Probab=95.96  E-value=0.018  Score=56.59  Aligned_cols=48  Identities=27%  Similarity=0.362  Sum_probs=42.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++.+++
T Consensus         5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l   53 (257)
T PRK09242          5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDEL   53 (257)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            3567899999997 68999999999999999999999999988887665

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.95  E-value=0.015  Score=58.91  Aligned_cols=38  Identities=26%  Similarity=0.312  Sum_probs=35.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKA  405 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~  405 (518)
                      ++|.|||+|-||.+++..|+..|++|++++++.++.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   42 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSR   42 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence            57999999999999999999999999999999988653

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.95  E-value=0.02  Score=56.24  Aligned_cols=48  Identities=27%  Similarity=0.411  Sum_probs=42.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ |+.|++++..|.+.|++|++++|+.++.+++++++
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   55 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAAL   55 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence            4578999999998 67999999999999999999999998888777655

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.95  E-value=0.0068  Score=56.36  Aligned_cols=65  Identities=23%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc--ccccc---ccccCCCCccEEEEcCCCC
Q 010101          370 FVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA--LHFEY---LHEFFPEKGMILANASAIG  438 (518)
Q Consensus       370 vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~--~~~~~---l~~~~~~~~divInatp~g  438 (518)
                      |+|+|+ |.+|+.++..|.+.|++|+.+.|+++++++   ..+.+.  .++.+   +.. .+.++|.||++.+.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~-al~~~d~vi~~~~~~   71 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKA-ALKGADAVIHAAGPP   71 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHH-HHTTSSEEEECCHST
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhh-hhhhcchhhhhhhhh
Confidence            689997 889999999999999999999999998877   222222  12222   222 356789999988543

...

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=95.95  E-value=0.055  Score=53.59  Aligned_cols=130  Identities=16%  Similarity=0.199  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNR----------NYERAKAL  406 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~-i~nR----------t~~ka~~l  406 (518)
                      +.|...+++..+... +        .+++|++++|-|.|.+|+.++..|.+.|++|+ |.+.          +.+..+.+
T Consensus        18 g~Gv~~~~~~~~~~~-~--------~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l   88 (254)
T cd05313          18 GYGLVYFVEEMLKDR-N--------ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAEL   88 (254)
T ss_pred             HHHHHHHHHHHHHhc-C--------CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHH
Confidence            678888877766543 2        57889999999999999999999999999766 6652          23333332


Q ss_pred             HHHh---c------------CcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChh---hhc--CCCEEEEEeeCC
Q 010101          407 ADAV---S------------GEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKE---ALK--AYELVFDAVYTP  466 (518)
Q Consensus       407 a~~~---~------------~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~---~l~--~~~~v~Di~Y~P  466 (518)
                      .+.-   +            .+.++-+++   ....+||+|-|.--+   .     +..+   .+.  +..+|+.-.-+|
T Consensus        89 ~~~~~~~~~~v~~~~~~~~~a~~~~~~~~---~~~~~DIliPcAl~~---~-----I~~~na~~i~~~~ak~I~EgAN~p  157 (254)
T cd05313          89 KEIKEVRRGRVSEYAKKYGTAKYFEGKKP---WEVPCDIAFPCATQN---E-----VDAEDAKLLVKNGCKYVAEGANMP  157 (254)
T ss_pred             HHHHHhcCCcHHHHhhcCCCCEEeCCcch---hcCCCcEEEeccccc---c-----CCHHHHHHHHHcCCEEEEeCCCCC
Confidence            2111   1            111111121   224689998664322   1     3332   343  457899999888


Q ss_pred             CchHHHHHHHHCCCeeeccHH
Q 010101          467 RNTRLLREAAEVGATVVSGVE  487 (518)
Q Consensus       467 ~~T~ll~~A~~~G~~~i~G~~  487 (518)
                      -...--+.-+++|+.+++..-
T Consensus       158 ~t~~a~~~L~~rGI~vvPD~l  178 (254)
T cd05313         158 CTAEAIEVFRQAGVLFAPGKA  178 (254)
T ss_pred             CCHHHHHHHHHCCcEEECchh
Confidence            633333334678888776543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.95  E-value=0.021  Score=56.46  Aligned_cols=74  Identities=16%  Similarity=0.191  Sum_probs=51.3

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHhcCcc--c--cccc---cccc------CCC
Q 010101          365 IAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNY--ERAKALADAVSGEA--L--HFEY---LHEF------FPE  426 (518)
Q Consensus       365 l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~--~ka~~la~~~~~~~--~--~~~~---l~~~------~~~  426 (518)
                      +++|+++|.|+   +|.|++++..|++.|++|++++|+.  +..++++++++...  +  ++.+   +...      ...
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g   84 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD   84 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            56899999996   7999999999999999999998763  55677777664321  1  1111   1100      124


Q ss_pred             CccEEEEcCCCC
Q 010101          427 KGMILANASAIG  438 (518)
Q Consensus       427 ~~divInatp~g  438 (518)
                      ..|++||+....
T Consensus        85 ~iD~li~nAG~~   96 (256)
T PRK07889         85 GLDGVVHSIGFA   96 (256)
T ss_pred             CCcEEEEccccc
Confidence            579999987543

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.94  E-value=0.02  Score=57.03  Aligned_cols=47  Identities=36%  Similarity=0.581  Sum_probs=42.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++++++
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   54 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEI   54 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            567899999998 78999999999999999999999999888887765

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.94  E-value=0.048  Score=58.81  Aligned_cols=32  Identities=34%  Similarity=0.414  Sum_probs=29.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      +++|+|.|++|++++..|.+.|++|+++++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~   33 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND   33 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            68999999999999999999999999999764

>PRK09186 flagellin modification protein A; Provisional

Probab=95.93  E-value=0.018  Score=56.42  Aligned_cols=45  Identities=29%  Similarity=0.383  Sum_probs=40.7

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++++++
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l   48 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESL   48 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHH
Confidence            5789999998 68999999999999999999999999988887665

>PRK06180 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.03  Score=55.86  Aligned_cols=72  Identities=25%  Similarity=0.264  Sum_probs=51.5

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCccEEE
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGMILA  432 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~divI  432 (518)
                      +++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+.+.+..+...    .++.+   +...      .....|+||
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv   83 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLV   83 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence            578999988 789999999999999999999999998888776543221    11211   1100      123579999


Q ss_pred             EcCCCC
Q 010101          433 NASAIG  438 (518)
Q Consensus       433 natp~g  438 (518)
                      |+....
T Consensus        84 ~~ag~~   89 (277)
T PRK06180         84 NNAGYG   89 (277)
T ss_pred             ECCCcc
Confidence            987654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.93  E-value=0.022  Score=51.13  Aligned_cols=38  Identities=24%  Similarity=0.461  Sum_probs=32.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKAL  406 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~l  406 (518)
                      +++|+|+||.|..++..|...|+ ++++++.+.-....+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl   39 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNL   39 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchh
Confidence            48999999999999999999999 999998774433333

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.92  E-value=0.019  Score=55.78  Aligned_cols=47  Identities=28%  Similarity=0.477  Sum_probs=41.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++++++|+|+ ||.|++++..|.+.|++|.+++|+.++++++.+++
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l   50 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAI   50 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence            367899999987 78999999999999999999999999888877665

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.91  E-value=0.014  Score=55.66  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=32.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      +++++|+|+|+||.|..++..|+..|+ +|++++.+
T Consensus        19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            567899999999999999999999999 99999754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.019  Score=56.70  Aligned_cols=47  Identities=28%  Similarity=0.367  Sum_probs=41.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++|.++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   52 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARL   52 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence            467899999998 68999999999999999999999998887776554

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.88  E-value=0.021  Score=55.66  Aligned_cols=46  Identities=33%  Similarity=0.507  Sum_probs=40.6

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++++++|.|+ |++|++++.+|.+.|++|++++|+.++.+.+.+.+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~   50 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQI   50 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56789999998 89999999999999999999999988777776654

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.022  Score=56.16  Aligned_cols=47  Identities=30%  Similarity=0.438  Sum_probs=41.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++.+++
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   51 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADL   51 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            356899999998 68999999999999999999999999888876655

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.83  E-value=0.021  Score=56.01  Aligned_cols=47  Identities=36%  Similarity=0.584  Sum_probs=41.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++.+++.+++.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEID   50 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            35789999997 689999999999999999999999998888877653

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.83  E-value=0.022  Score=55.80  Aligned_cols=47  Identities=26%  Similarity=0.509  Sum_probs=40.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++.+++.+.+
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~   51 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALI   51 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            356899999998 68999999999999999999999998877766554

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.83  E-value=0.033  Score=55.13  Aligned_cols=48  Identities=27%  Similarity=0.332  Sum_probs=37.6

Q ss_pred             ccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNY---ERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt~---~ka~~la~~~~  411 (518)
                      .+++|.++|.|++   |.|++++..|++.|++|++..|+.   +.++++++.++
T Consensus         5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g   58 (260)
T PRK06603          5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG   58 (260)
T ss_pred             ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC
Confidence            3568999999996   799999999999999999999884   23444544433

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.82  E-value=0.031  Score=57.71  Aligned_cols=92  Identities=14%  Similarity=0.099  Sum_probs=60.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-cccc-----cccccCCCCccEEEEcCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFE-----YLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~-----~l~~~~~~~~divInatp~g  438 (518)
                      .+++++|+|+|++|.+++..+..+|+ +|++++|++++. ++++++|... +...     ++.. ....+|++|+++...
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~-~~a~~lGa~~vi~~~~~~~~~~~~-~~g~~D~vid~~G~~  246 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSL-SLAREMGADKLVNPQNDDLDHYKA-EKGYFDVSFEVSGHP  246 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHH-HHHHHcCCcEEecCCcccHHHHhc-cCCCCCEEEECCCCH
Confidence            57899999999999999988888999 799999998886 4667788643 2221     1111 112479999998531


Q ss_pred             CCCCCCCCCCChhhhcCCCEEEEEee
Q 010101          439 MEPNSDQSPVPKEALKAYELVFDAVY  464 (518)
Q Consensus       439 ~~~~~~~~~~~~~~l~~~~~v~Di~Y  464 (518)
                      .  .   .......++++..++.+-.
T Consensus       247 ~--~---~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        247 S--S---INTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H--H---HHHHHHHhhcCCEEEEEcc
Confidence            0  0   0011234566666665543

>PRK08589 short chain dehydrogenase; Validated

Probab=95.81  E-value=0.022  Score=56.69  Aligned_cols=45  Identities=29%  Similarity=0.445  Sum_probs=39.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+ ++++++++++
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~   49 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKI   49 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHH
Confidence            56899999998 789999999999999999999999 7777776665

>PRK09291 short chain dehydrogenase; Provisional

Probab=95.80  E-value=0.028  Score=55.07  Aligned_cols=71  Identities=23%  Similarity=0.239  Sum_probs=49.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---c--c--ccccc---ccccCCCCccEEEEcC
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG---E--A--LHFEY---LHEFFPEKGMILANAS  435 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~---~--~--~~~~~---l~~~~~~~~divInat  435 (518)
                      +++++|.|+ ||.|++++..|.+.|++|+++.|+.++++++.+....   .  .  .++.+   +........|+|||+.
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a   81 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA   81 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence            468999998 7899999999999999999999998887777654321   1  1  12211   1111112689999987


Q ss_pred             CC
Q 010101          436 AI  437 (518)
Q Consensus       436 p~  437 (518)
                      ..
T Consensus        82 g~   83 (257)
T PRK09291         82 GI   83 (257)
T ss_pred             Cc
Confidence            54

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.79  E-value=0.05  Score=58.53  Aligned_cols=34  Identities=15%  Similarity=0.283  Sum_probs=30.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      +..++|+|.||+|++++..|.++|++|++.++..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            3579999999999999999999999999999754

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=95.79  E-value=0.24  Score=52.89  Aligned_cols=129  Identities=16%  Similarity=0.180  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEE-EEeCC----------HHHHHH
Q 010101          337 DCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRN----------YERAKA  405 (518)
Q Consensus       337 D~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~-i~nRt----------~~ka~~  405 (518)
                      -+.|.+.+++..+... +        .+++|++|+|-|.|.+|..++..|.++|++|+ |.+.+          .++...
T Consensus       216 TG~Gv~~~~~~~l~~~-~--------~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~  286 (454)
T PTZ00079        216 TGYGLVYFVLEVLKKL-N--------DSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAY  286 (454)
T ss_pred             cHHHHHHHHHHHHHHc-C--------CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHH
Confidence            4778888777766543 2        56899999999999999999999999999766 87776          666544


Q ss_pred             HHHHhc---------------CcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhh---h--cCCCEEEEEeeC
Q 010101          406 LADAVS---------------GEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEA---L--KAYELVFDAVYT  465 (518)
Q Consensus       406 la~~~~---------------~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~---l--~~~~~v~Di~Y~  465 (518)
                      +.+.-.               .+.++-+++   ....+||++-|.-   ..     .+..+.   +  ....+|..-.-.
T Consensus       287 l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~---~~~~cDI~iPcA~---~n-----~I~~~~a~~l~~~~ak~V~EgAN~  355 (454)
T PTZ00079        287 LMDLKNVKRGRLKEYAKHSSTAKYVPGKKP---WEVPCDIAFPCAT---QN-----EINLEDAKLLIKNGCKLVAEGANM  355 (454)
T ss_pred             HHHHHhhcCCcHHhhhhccCCcEEeCCcCc---ccCCccEEEeccc---cc-----cCCHHHHHHHHHcCCeEEEecCCC
Confidence            332110               011111111   1235888885542   21     133332   2  145788888877


Q ss_pred             CCchHHHHHHHHCCCeeecc
Q 010101          466 PRNTRLLREAAEVGATVVSG  485 (518)
Q Consensus       466 P~~T~ll~~A~~~G~~~i~G  485 (518)
                      |-...-.+.-+++|+.++++
T Consensus       356 p~t~eA~~~L~~~GI~~~PD  375 (454)
T PTZ00079        356 PTTIEATHLFKKNGVIFCPG  375 (454)
T ss_pred             CCCHHHHHHHHHCCcEEECh
Confidence            75333333335666655544

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.024  Score=56.06  Aligned_cols=47  Identities=28%  Similarity=0.463  Sum_probs=41.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++++++|.|+ ||.|++++..|.+.|++|.++.|+.++.+++.+.+
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l   54 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQI   54 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999998 47999999999999999999999999888887665

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.78  E-value=0.034  Score=56.88  Aligned_cols=71  Identities=17%  Similarity=0.206  Sum_probs=52.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc-c------ccccccccCCCCccEEEEcCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA-L------HFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~-~------~~~~l~~~~~~~~divInatp~g~  439 (518)
                      ++.|||+|.+|.++++.|+..|.  +|.+++|+.++++..+.++.... .      ...+.+  ...++|++|.|.+.+.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~--~l~~aDiViita~~~~   79 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYA--DCKGADVVVITAGANQ   79 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHH--HhCCCCEEEEccCCCC
Confidence            68999999999999999999994  89999999988876555443211 0      001222  3567999999998765


Q ss_pred             CC
Q 010101          440 EP  441 (518)
Q Consensus       440 ~~  441 (518)
                      .|
T Consensus        80 ~~   81 (308)
T cd05292          80 KP   81 (308)
T ss_pred             CC
Confidence            44

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.77  E-value=0.03  Score=48.14  Aligned_cols=66  Identities=27%  Similarity=0.312  Sum_probs=48.9

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-----cccccccccCCCCccEEEEcCC
Q 010101          370 FVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-----LHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       370 vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-----~~~~~l~~~~~~~~divInatp  436 (518)
                      ++|+|.|..|+.++..|.+.+.+|+++.+++++.+++.+.. ...     .+.+.+....+.+++.+|-+|+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEEccC
Confidence            58999999999999999996669999999999998887654 221     1222233334677888888775

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06484 short chain dehydrogenase; Validated

Probab=95.73  E-value=0.03  Score=61.26  Aligned_cols=74  Identities=28%  Similarity=0.385  Sum_probs=54.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~d  429 (518)
                      ...+|.++|.|+ ||.|++++..|++.|++|++++|+.++.+++++.++....    ++.+   +...      .....|
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id  345 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLD  345 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            346899999987 6899999999999999999999999999999887754321    1111   1110      124579


Q ss_pred             EEEEcCCC
Q 010101          430 ILANASAI  437 (518)
Q Consensus       430 ivInatp~  437 (518)
                      ++||+...
T Consensus       346 ~li~nAg~  353 (520)
T PRK06484        346 VLVNNAGI  353 (520)
T ss_pred             EEEECCCC
Confidence            99998754

>PRK14030 glutamate dehydrogenase; Provisional

Probab=95.73  E-value=0.11  Score=55.52  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=80.1

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEE--------Ee---CCHHHHHH
Q 010101          337 DCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVII--------FN---RNYERAKA  405 (518)
Q Consensus       337 D~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i--------~n---Rt~~ka~~  405 (518)
                      -+.|...+++..+... |        .+++|++|.|-|.|.+|..++..|.+.|++|+.        +|   -+.++.+.
T Consensus       207 Tg~Gv~~~~~~~~~~~-g--------~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~  277 (445)
T PRK14030        207 TGFGALYFVHQMLETK-G--------IDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDY  277 (445)
T ss_pred             cHHHHHHHHHHHHHHc-C--------CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHH
Confidence            3778777777766543 3        578999999999999999999999999998776        67   56665332


Q ss_pred             HHH---H-----------h-cCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCCh---hhhc--CCCEEEEEeeC
Q 010101          406 LAD---A-----------V-SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPK---EALK--AYELVFDAVYT  465 (518)
Q Consensus       406 la~---~-----------~-~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~---~~l~--~~~~v~Di~Y~  465 (518)
                      |.+   .           + +.+.++-+++   ....+||+|-|.   +...     +..   ..+.  ...+|+.-.-+
T Consensus       278 l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~---~~~~cDVliPcA---l~n~-----I~~~na~~l~~~~ak~V~EgAN~  346 (445)
T PRK14030        278 MLELRASGNDIVAPYAEKFPGSTFFAGKKP---WEQKVDIALPCA---TQNE-----LNGEDADKLIKNGVLCVAEVSNM  346 (445)
T ss_pred             HHHHHHhcCccHHHHHhcCCCCEEcCCccc---eeccccEEeecc---cccc-----CCHHHHHHHHHcCCeEEEeCCCC
Confidence            321   1           1 1111111111   123588888554   2222     333   2342  45789999888


Q ss_pred             CCchHHHHHHHHCCCeeeccH
Q 010101          466 PRNTRLLREAAEVGATVVSGV  486 (518)
Q Consensus       466 P~~T~ll~~A~~~G~~~i~G~  486 (518)
                      |....-.+.-+++|+.++++.
T Consensus       347 p~t~eA~~iL~~rGI~~vPD~  367 (445)
T PRK14030        347 GCTAEAIDKFIAAKQLFAPGK  367 (445)
T ss_pred             CCCHHHHHHHHHCCCEEeCcc
Confidence            743333344466777666543

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.71  E-value=0.054  Score=57.77  Aligned_cols=105  Identities=19%  Similarity=0.181  Sum_probs=66.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-cccccccc------------cccCCCCccEEEEc
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG-EALHFEYL------------HEFFPEKGMILANA  434 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~-~~~~~~~l------------~~~~~~~~divIna  434 (518)
                      +++.|||.|-+|..++..|++.|++|+.++|++++.+.+....-. ....++++            .. ...++|++|-|
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~-~~~~aDvvii~   82 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT-TPEPADAFLIA   82 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec-ccccCCEEEEE
Confidence            579999999999999999999999999999999998876421100 00000000            01 13468999999


Q ss_pred             CCCCCCCCCCC--CCCC---h---hhhcCCCEEEEEeeCCC-chHHHH
Q 010101          435 SAIGMEPNSDQ--SPVP---K---EALKAYELVFDAVYTPR-NTRLLR  473 (518)
Q Consensus       435 tp~g~~~~~~~--~~~~---~---~~l~~~~~v~Di~Y~P~-~T~ll~  473 (518)
                      .|....++...  ..+.   .   ..++++.+|++....|. .|..+.
T Consensus        83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~  130 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMA  130 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHH
Confidence            98754322110  0111   0   12466788988888654 444443

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.71  E-value=0.023  Score=57.64  Aligned_cols=47  Identities=32%  Similarity=0.506  Sum_probs=40.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++|+++|.|+ ||.|++++..|++.|++|+++.|+.+++++..+.+
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l   60 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARI   60 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999987 79999999999999999999999998877665544

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=95.68  E-value=0.039  Score=53.74  Aligned_cols=36  Identities=31%  Similarity=0.558  Sum_probs=33.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            57899999998 6899999999999999999999975

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=95.68  E-value=0.03  Score=50.92  Aligned_cols=44  Identities=41%  Similarity=0.568  Sum_probs=38.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCC--HHHHHHHHHHhc
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGA-RVIIFNRN--YERAKALADAVS  411 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~-~v~i~nRt--~~ka~~la~~~~  411 (518)
                      |.++|+|+ ||.|++++.+|.+.|. +|.++.|+  .++++++.+.+.
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~   48 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELK   48 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccc
Confidence            57899986 6899999999999988 99999999  888888877664

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.67  E-value=0.029  Score=54.93  Aligned_cols=48  Identities=38%  Similarity=0.556  Sum_probs=42.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++.+++
T Consensus         4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~   52 (252)
T PRK07035          4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAI   52 (252)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3567899999987 68999999999999999999999999888887765

>PRK07831 short chain dehydrogenase; Provisional

Probab=95.67  E-value=0.029  Score=55.34  Aligned_cols=47  Identities=38%  Similarity=0.508  Sum_probs=40.1

Q ss_pred             ccCCcEEEEEcc-c-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-G-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-G-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++++++|.|+ | |.|++++..|++.|++|++++|+.++.++..+.+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~   62 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL   62 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            456899999997 6 8999999999999999999999988776665543

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=95.67  E-value=0.018  Score=62.86  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=36.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      ++|.|||+|-||+.++..|+..|++|+++||++++++..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~   44 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARA   44 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence            679999999999999999999999999999999987653

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=95.65  E-value=0.034  Score=55.02  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=30.7

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCC
Q 010101          365 IAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       365 l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt  399 (518)
                      +++|.++|.|+   +|.|++++..|++.|++|++..|+
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~   41 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP   41 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            56899999997   499999999999999999888654

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.65  E-value=0.031  Score=55.42  Aligned_cols=74  Identities=15%  Similarity=0.193  Sum_probs=48.2

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCcc---ccccc---cccc------CCC
Q 010101          365 IAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNY---ERAKALADAVSGEA---LHFEY---LHEF------FPE  426 (518)
Q Consensus       365 l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~---~ka~~la~~~~~~~---~~~~~---l~~~------~~~  426 (518)
                      +++|.++|.|+   +|.|++++..|++.|++|++..|+.   ++++++.++.+...   .++.+   +...      ...
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            56899999994   5999999999999999999887653   34445544433211   11111   1100      124


Q ss_pred             CccEEEEcCCCC
Q 010101          427 KGMILANASAIG  438 (518)
Q Consensus       427 ~~divInatp~g  438 (518)
                      ..|++||+...+
T Consensus        84 ~iD~lVnnAG~~   95 (261)
T PRK08690         84 GLDGLVHSIGFA   95 (261)
T ss_pred             CCcEEEECCccC
Confidence            579999997654

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.63  E-value=0.023  Score=56.78  Aligned_cols=74  Identities=16%  Similarity=0.163  Sum_probs=49.7

Q ss_pred             cCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHH---HHHHHHHhcCcc---ccccc---cccc------CCC
Q 010101          365 IAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYER---AKALADAVSGEA---LHFEY---LHEF------FPE  426 (518)
Q Consensus       365 l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt~~k---a~~la~~~~~~~---~~~~~---l~~~------~~~  426 (518)
                      +++|.++|.|++   |.|++++.+|++.|++|.++.|+.+.   .+++.+.++...   .++.+   +...      ...
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG   84 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            568999999997   89999999999999999999998643   334444443211   12211   1000      124


Q ss_pred             CccEEEEcCCCC
Q 010101          427 KGMILANASAIG  438 (518)
Q Consensus       427 ~~divInatp~g  438 (518)
                      ..|++||+....
T Consensus        85 ~iD~lVnnAG~~   96 (271)
T PRK06505         85 KLDFVVHAIGFS   96 (271)
T ss_pred             CCCEEEECCccC
Confidence            679999987543

>PRK07109 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.029  Score=57.99  Aligned_cols=47  Identities=40%  Similarity=0.649  Sum_probs=41.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++++++|.|+ ||.|++++..|++.|++|++++|+.++++++.+++
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l   52 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEI   52 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            466889999998 78999999999999999999999999888887665

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.61  E-value=0.028  Score=55.19  Aligned_cols=47  Identities=36%  Similarity=0.489  Sum_probs=42.2

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +.+++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.++
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~   51 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG   51 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC
Confidence            46789999997 789999999999999999999999999888887765

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.61  E-value=0.026  Score=57.18  Aligned_cols=67  Identities=22%  Similarity=0.164  Sum_probs=47.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc--------cc---cccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA--------LH---FEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~--------~~---~~~l~~~~~~~~divInatp~  437 (518)
                      +++|+|+|.+|.+++..|++.|.+|+++.| .++.+++.+. +...        ..   ..+..+ ....+|++|-|++.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vilavk~   78 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER-GLVIRSDHGDAVVPGPVITDPEE-LTGPFDLVILAVKA   78 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC-CeEEEeCCCeEEecceeecCHHH-ccCCCCEEEEEecc
Confidence            689999999999999999999999999999 7777776542 2110        00   111111 23568999988875


Q ss_pred             C
Q 010101          438 G  438 (518)
Q Consensus       438 g  438 (518)
                      .
T Consensus        79 ~   79 (305)
T PRK12921         79 Y   79 (305)
T ss_pred             c
Confidence            3

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.029  Score=56.19  Aligned_cols=47  Identities=23%  Similarity=0.341  Sum_probs=41.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~   51 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLR   51 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            56899999986 689999999999999999999999988888776653

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.60  E-value=0.038  Score=54.37  Aligned_cols=37  Identities=24%  Similarity=0.495  Sum_probs=33.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~   42 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE   42 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence            467899999987 6899999999999999999999874

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.60  E-value=0.032  Score=55.22  Aligned_cols=48  Identities=29%  Similarity=0.306  Sum_probs=42.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .++++|+++|.|+ ||+|++++..|++.|++|.+++|+.++.+++.+.+
T Consensus         6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~   54 (265)
T PRK07097          6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAY   54 (265)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence            4567899999998 57999999999999999999999999888776665

>PRK06194 hypothetical protein; Provisional

Probab=95.59  E-value=0.03  Score=56.00  Aligned_cols=46  Identities=24%  Similarity=0.369  Sum_probs=40.6

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++++||.|+ ||.|++++..|.+.|++|++++|+.++.+++++++
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAEL   50 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence            45789999987 78999999999999999999999988887777665

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=95.58  E-value=0.029  Score=61.33  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=36.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      ++|.|||+|-||+.++..|+..|++|++++|++++++..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~   46 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAA   46 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999999988774

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.57  E-value=0.031  Score=57.23  Aligned_cols=47  Identities=32%  Similarity=0.383  Sum_probs=41.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ..+|+++|.|+ ||+|++++..|.+.|++|++++|+.++++++.+++.
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~   51 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELG   51 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh
Confidence            35789999987 789999999999999999999999999988877763

>PRK07411 hypothetical protein; Validated

Probab=95.56  E-value=0.017  Score=60.99  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=31.9

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      +++.+|+|+|+||.|-.++..|+..|+ +++|++.+
T Consensus        36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            457899999999999999999999999 99998854

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.56  E-value=0.02  Score=56.40  Aligned_cols=74  Identities=19%  Similarity=0.170  Sum_probs=51.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCccc--cccc----ccccCC-CCccEEEEc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV-SGEAL--HFEY----LHEFFP-EKGMILANA  434 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~-~~~~~--~~~~----l~~~~~-~~~divIna  434 (518)
                      +.++++++|+|+ |+.|++++..|.+.|++|+.+.|+.++++++.... +...+  ++.+    +.. .. ...|+||++
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~-~~~~~~d~vi~~   92 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVE-AIGDDSDAVICA   92 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHH-HhhcCCCEEEEC
Confidence            456789999996 88999999999999999999999998876553321 11111  2222    112 23 468999988


Q ss_pred             CCCC
Q 010101          435 SAIG  438 (518)
Q Consensus       435 tp~g  438 (518)
                      ++..
T Consensus        93 ~g~~   96 (251)
T PLN00141         93 TGFR   96 (251)
T ss_pred             CCCC
Confidence            7653

>PRK06720 hypothetical protein; Provisional

Probab=95.56  E-value=0.037  Score=51.46  Aligned_cols=47  Identities=32%  Similarity=0.582  Sum_probs=40.8

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .++++.++|.|++ |+|++++..|.+.|++|.+++|+.+.+++.++++
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l   60 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEI   60 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4678999999985 6999999999999999999999988877766554

>PRK06484 short chain dehydrogenase; Validated

Probab=95.55  E-value=0.033  Score=60.88  Aligned_cols=71  Identities=27%  Similarity=0.450  Sum_probs=53.4

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---c-------cccCCCCccE
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---L-------HEFFPEKGMI  430 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l-------~~~~~~~~di  430 (518)
                      ++|.++|.|+ +|.|++++..|.+.|++|+++.|+.+++++++++++...    .++.+   +       .+ .....|+
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~g~iD~   82 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHR-EFGRIDV   82 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHH-HhCCCCE
Confidence            5789999988 589999999999999999999999999998888775432    11111   1       11 1245799


Q ss_pred             EEEcCCC
Q 010101          431 LANASAI  437 (518)
Q Consensus       431 vInatp~  437 (518)
                      +||+...
T Consensus        83 li~nag~   89 (520)
T PRK06484         83 LVNNAGV   89 (520)
T ss_pred             EEECCCc
Confidence            9998653

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.54  E-value=0.04  Score=54.61  Aligned_cols=73  Identities=15%  Similarity=0.160  Sum_probs=49.3

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHHhcCcc---ccccc---cccc------CCC
Q 010101          365 IAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNR---NYERAKALADAVSGEA---LHFEY---LHEF------FPE  426 (518)
Q Consensus       365 l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nR---t~~ka~~la~~~~~~~---~~~~~---l~~~------~~~  426 (518)
                      +++|+++|.|+   +|.|++++..|++.|++|++..|   +.++.+++.++++...   .++.+   +...      ...
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD   83 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence            56899999994   59999999999999999988754   4566666666554211   11111   1100      124


Q ss_pred             CccEEEEcCCC
Q 010101          427 KGMILANASAI  437 (518)
Q Consensus       427 ~~divInatp~  437 (518)
                      ..|++||+...
T Consensus        84 ~iD~lvnnAG~   94 (260)
T PRK06997         84 GLDGLVHSIGF   94 (260)
T ss_pred             CCcEEEEcccc
Confidence            67999998754

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.54  E-value=0.018  Score=60.93  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=31.7

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      +++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            456899999999999999999999999 99999854

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=95.54  E-value=0.021  Score=58.54  Aligned_cols=118  Identities=17%  Similarity=0.231  Sum_probs=72.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.||+|.|+|.|..|++++..|...|+.|.-.+|+..+-+.. .+++.+..++++    .+.++|+||.+.|..-.. 
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~-~~~~~~~~d~~~----~~~~sD~ivv~~pLt~~T-  231 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEA-YEYYAEFVDIEE----LLANSDVIVVNCPLTKET-  231 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhH-HHhcccccCHHH----HHhhCCEEEEecCCCHHH-
Confidence            45789999999999999999999999998899999987665443 334444444444    345789999888875221 


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeCCC-chHHHHHHHHCCCeeeccHHH
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYTPR-NTRLLREAAEVGATVVSGVEM  488 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~~~i~G~~m  488 (518)
                        .-.+..+.   ++++.+++-..=.+- .-.-+.+|-+.|-..--|++.
T Consensus       232 --~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDV  279 (336)
T KOG0069|consen  232 --RHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDV  279 (336)
T ss_pred             --HHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccc
Confidence              11234332   345555554433322 222233444444444444443

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.54  E-value=0.034  Score=54.13  Aligned_cols=46  Identities=26%  Similarity=0.460  Sum_probs=40.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++++++|+|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~   49 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAEC   49 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            46789999998 89999999999999999999999998877776654

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=95.53  E-value=0.061  Score=57.90  Aligned_cols=33  Identities=27%  Similarity=0.239  Sum_probs=29.2

Q ss_pred             EEEEEccchhHHH-HHHHHHHCCCeEEEEeCCHH
Q 010101          369 IFVLVGAGGAGRA-LAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       369 ~vlvlGaGg~ara-ia~~L~~~G~~v~i~nRt~~  401 (518)
                      ++.++|.||+|.+ +|..|.++|++|+++++...
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~   34 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN   34 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc
Confidence            3789999999998 89999999999999997654

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.52  E-value=0.035  Score=59.63  Aligned_cols=69  Identities=23%  Similarity=0.308  Sum_probs=52.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-----ccccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-----HFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-----~~~~l~~~~~~~~divInatp~  437 (518)
                      +++|+|+|.+|++++..|.+.|.+|++++|++++.+++.+..+...+     ....+.+....++|.+|.+|+-
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~   75 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS   75 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence            68999999999999999999999999999999999888764443221     1122333235678999988863

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.52  E-value=0.033  Score=56.36  Aligned_cols=73  Identities=22%  Similarity=0.242  Sum_probs=55.0

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcccc-------cccc----cc-cCCCCccEEE
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALH-------FEYL----HE-FFPEKGMILA  432 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~-------~~~l----~~-~~~~~~divI  432 (518)
                      .|.+|||+|||.+|......++..|+ +|.+++-.++|. ++|++||.+...       .+++    .. ..-..+|+.|
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~  247 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF  247 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence            47899999999999999999999999 999999998886 677779875321       1111    11 0113489999


Q ss_pred             EcCCCCC
Q 010101          433 NASAIGM  439 (518)
Q Consensus       433 natp~g~  439 (518)
                      +||.+.+
T Consensus       248 dCsG~~~  254 (354)
T KOG0024|consen  248 DCSGAEV  254 (354)
T ss_pred             EccCchH
Confidence            9997653

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.50  E-value=0.031  Score=59.52  Aligned_cols=38  Identities=32%  Similarity=0.440  Sum_probs=35.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      ..+.||++.|+|.|.+|+.+|..+...|.+|..++|+.
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~  184 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED  184 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            35789999999999999999999999999999999874

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.48  E-value=0.039  Score=56.80  Aligned_cols=74  Identities=14%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------c-cccc-ccccccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSG-------E-ALHF-EYLHEFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~-------~-~~~~-~~l~~~~~~~~divInat  435 (518)
                      +.+++.|||+|.+|.++++.++..|. +|+++++++++++.-+-++..       . .+.. .+.+  ...++|+||++.
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~--~l~~aDiVI~ta   82 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYE--DIAGSDVVIVTA   82 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHH--HhCCCCEEEECC
Confidence            45789999999999999999999997 999999998865432222110       1 1111 2332  357899999988


Q ss_pred             CCCCCC
Q 010101          436 AIGMEP  441 (518)
Q Consensus       436 p~g~~~  441 (518)
                      ..+-.|
T Consensus        83 g~~~~~   88 (321)
T PTZ00082         83 GLTKRP   88 (321)
T ss_pred             CCCCCC
Confidence            665444

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.48  E-value=0.035  Score=54.44  Aligned_cols=47  Identities=36%  Similarity=0.555  Sum_probs=41.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +++++++|.|+ |++|++++..|++.|++|.+++|+.++.+++.+.+.
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~   52 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEIN   52 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Confidence            56899999998 889999999999999999999999988877776653

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=95.48  E-value=0.027  Score=56.98  Aligned_cols=116  Identities=20%  Similarity=0.181  Sum_probs=85.2

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccccc-----ccccCCCCccEEEEcCCCCCCC
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEY-----LHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~-----l~~~~~~~~divInatp~g~~~  441 (518)
                      ...+|.|| |-+|+-++.+|+..|.+-.+.+|+..|...+.+.++.+...|+-     +.+ .....++|+||..+  +.
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~-~~~~~~VVlncvGP--yt   83 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEA-MASRTQVVLNCVGP--YT   83 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHH-HHhcceEEEecccc--cc
Confidence            46899999 66999999999999998899999999999999999987655532     222 35678999999853  21


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeCCC-----chHHHHHHHHCCCeeeccHH
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYTPR-----NTRLLREAAEVGATVVSGVE  487 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~P~-----~T~ll~~A~~~G~~~i~G~~  487 (518)
                      . ...|+-..++..+.--+|+.=...     ....-++|++.|+.+++|-+
T Consensus        84 ~-~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cG  133 (382)
T COG3268          84 R-YGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPGCG  133 (382)
T ss_pred             c-cccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEeccCC
Confidence            1 234555667777777778864322     12224678889999998754

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.47  E-value=0.066  Score=60.81  Aligned_cols=190  Identities=20%  Similarity=0.220  Sum_probs=103.9

Q ss_pred             HHHHc-CCCceEEecccCcHHHHHHHh--cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCeEEEee
Q 010101          259 AFRHT-RFNGIYVPMLVDDVKEFFRTY--SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYN  335 (518)
Q Consensus       259 ~f~~~-gl~~~y~~~~~~~l~~~~~~l--~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l~G~N  335 (518)
                      .|+++ |+|..=+.++.+|.++|++..  ..+.|+|+|.-==--.+.+..++++-+      ..|.-++.  |. .+|+-
T Consensus        95 l~~~~~gid~~~i~~~~~d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i~~~~~~------~~~ip~f~--DD-~~GTa  165 (752)
T PRK07232         95 LFKKFAGIDVFDIEVDEEDPDKFIEAVAALEPTFGGINLEDIKAPECFYIEEKLRE------RMDIPVFH--DD-QHGTA  165 (752)
T ss_pred             HHHhhcCCCccccccCCCCHHHHHHHHHHhCCCccEEeeeecCCchHHHHHHHHHH------hcCCCeec--cc-cchHH
Confidence            34443 355332223335788888776  357899987532112223333322221      22333343  22 44433


Q ss_pred             cC-HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC---eEEEEeCC----HHH-----
Q 010101          336 TD-CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA---RVIIFNRN----YER-----  402 (518)
Q Consensus       336 TD-~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~---~v~i~nRt----~~k-----  402 (518)
                      .= -.|++++++-     .|        .+++..++++.|||.+|-+++..|...|.   +|+++++.    .++     
T Consensus       166 ~v~lA~l~na~~~-----~~--------~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~  232 (752)
T PRK07232        166 IISAAALLNALEL-----VG--------KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMD  232 (752)
T ss_pred             HHHHHHHHHHHHH-----hC--------CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCccccc
Confidence            22 2334445432     12        46778899999999999999999999998   79998863    111     


Q ss_pred             -H-HHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhh---cCCCEEEEEee-CCCchHHHHHHH
Q 010101          403 -A-KALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEAL---KAYELVFDAVY-TPRNTRLLREAA  476 (518)
Q Consensus       403 -a-~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l---~~~~~v~Di~Y-~P~~T~ll~~A~  476 (518)
                       . +.+|+.     ....+|.+ .+..+|++|-.+..|.        +.++++   .+..+||=+.- .|+-||  ++|.
T Consensus       233 ~~k~~~a~~-----~~~~~l~~-~i~~~~v~iG~s~~g~--------~~~~~v~~M~~~piifalsNP~~E~~p--~~a~  296 (752)
T PRK07232        233 EWKAAYAVD-----TDARTLAE-AIEGADVFLGLSAAGV--------LTPEMVKSMADNPIIFALANPDPEITP--EEAK  296 (752)
T ss_pred             HHHHHHhcc-----CCCCCHHH-HHcCCCEEEEcCCCCC--------CCHHHHHHhccCCEEEecCCCCccCCH--HHHH
Confidence             1 123332     12234444 4566899997765332        445543   34678887753 243354  4444


Q ss_pred             HC--CCeeeccH
Q 010101          477 EV--GATVVSGV  486 (518)
Q Consensus       477 ~~--G~~~i~G~  486 (518)
                      +.  |+.+..|.
T Consensus       297 ~~~~~~i~atGr  308 (752)
T PRK07232        297 AVRPDAIIATGR  308 (752)
T ss_pred             HhcCCEEEEECC
Confidence            44  45555554

>PLN02253 xanthoxin dehydrogenase

Probab=95.46  E-value=0.036  Score=55.28  Aligned_cols=48  Identities=21%  Similarity=0.401  Sum_probs=42.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++.+++++.++
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~   63 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG   63 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Confidence            467899999987 689999999999999999999999888888877664

>PRK06483 dihydromonapterin reductase; Provisional

Probab=95.45  E-value=0.042  Score=53.23  Aligned_cols=39  Identities=28%  Similarity=0.284  Sum_probs=33.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKA  405 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~  405 (518)
                      +|+++|.|+ ||.|++++..|++.|++|.+++|+.++..+
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   41 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAID   41 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHH
Confidence            478999997 689999999999999999999998765433

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.44  E-value=0.037  Score=56.87  Aligned_cols=71  Identities=15%  Similarity=0.188  Sum_probs=49.7

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhcCc---c--ccccc---ccccCCCCccEEEEc
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRG--ARVIIFNRNYERAKALADAVSGE---A--LHFEY---LHEFFPEKGMILANA  434 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G--~~v~i~nRt~~ka~~la~~~~~~---~--~~~~~---l~~~~~~~~divIna  434 (518)
                      ++++++|.|+ |+.|++++..|.+.|  .+|++++|+..+...+.+.+...   .  .++.+   +.. ...+.|+|||+
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~-~~~~iD~Vih~   81 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTR-ALRGVDYVVHA   81 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHH-HHhcCCEEEEC
Confidence            5789999997 789999999999886  58999999877766665554321   1  12222   222 23458999998


Q ss_pred             CCC
Q 010101          435 SAI  437 (518)
Q Consensus       435 tp~  437 (518)
                      ...
T Consensus        82 Ag~   84 (324)
T TIGR03589        82 AAL   84 (324)
T ss_pred             ccc
Confidence            754

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.44  E-value=0.039  Score=54.50  Aligned_cols=46  Identities=41%  Similarity=0.630  Sum_probs=40.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++++++|+|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL   49 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            45789999996 78999999999999999999999999888887664

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.43  E-value=0.031  Score=55.06  Aligned_cols=46  Identities=28%  Similarity=0.338  Sum_probs=37.3

Q ss_pred             ccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|++   |+|++++..|++.|++|+++.|+. +.++..+++
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~   52 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKL   52 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhh
Confidence            3678999999985   999999999999999999999984 444443433

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.43  E-value=0.039  Score=54.72  Aligned_cols=47  Identities=30%  Similarity=0.405  Sum_probs=41.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++++++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   53 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQL   53 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            357899999998 78999999999999999999999998877776554

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.035  Score=54.42  Aligned_cols=44  Identities=27%  Similarity=0.458  Sum_probs=39.0

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++++.+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~   45 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEI   45 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            478999988 57999999999999999999999998888877665

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.42  E-value=0.039  Score=54.51  Aligned_cols=49  Identities=24%  Similarity=0.299  Sum_probs=39.8

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYE---RAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt~~---ka~~la~~~~  411 (518)
                      .++++|.++|.|++   |.|++++..|++.|++|.++.|+.+   ++++++++++
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~   60 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD   60 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc
Confidence            35789999999975   8999999999999999999999854   3455665554

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.037  Score=53.97  Aligned_cols=46  Identities=39%  Similarity=0.604  Sum_probs=40.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.++..+.+
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   49 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAI   49 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHH
Confidence            56889999988 78999999999999999999999998887777665

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.038  Score=53.35  Aligned_cols=47  Identities=26%  Similarity=0.404  Sum_probs=41.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +.+++++|+|+ |+.|++++..|.+.|++|.+++|++++.+++.+.+.
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~   51 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELN   51 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHh
Confidence            34689999997 779999999999999999999999998888877664

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.40  E-value=0.038  Score=53.97  Aligned_cols=48  Identities=31%  Similarity=0.541  Sum_probs=41.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++++++|.|+ |+.|.+++..|++.|++|++++|+.++++++.+++.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~   57 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIE   57 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH
Confidence            467899999987 679999999999999999999999998888776653

>PRK08324 short chain dehydrogenase; Validated

Probab=95.38  E-value=0.032  Score=63.41  Aligned_cols=49  Identities=39%  Similarity=0.605  Sum_probs=43.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG  412 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~  412 (518)
                      .+.|++++|.|+ ||+|++++..|.+.|++|++++|+.++++++++.++.
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~  468 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG  468 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc
Confidence            457899999995 8999999999999999999999999998888877653

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.38  E-value=0.036  Score=57.04  Aligned_cols=41  Identities=24%  Similarity=0.399  Sum_probs=37.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA  409 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~  409 (518)
                      ++.|+|+|.+|.+++..|++.|.+|++++|+.+.++++.+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~   42 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTK   42 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc
Confidence            58999999999999999999999999999999888887653

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.36  E-value=0.036  Score=54.51  Aligned_cols=46  Identities=22%  Similarity=0.401  Sum_probs=38.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|.++.|+ ++.+++.+.+
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~   58 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLI   58 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHH
Confidence            467899999998 679999999999999999999998 5555554443

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.35  E-value=0.042  Score=54.60  Aligned_cols=47  Identities=28%  Similarity=0.559  Sum_probs=41.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++++++|.|+ |+.|++++..|.+.|++|++++|+.++.+.+.+.+
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l   51 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEI   51 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence            356899999998 78999999999999999999999988877766554

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.35  E-value=0.042  Score=53.14  Aligned_cols=46  Identities=33%  Similarity=0.510  Sum_probs=40.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++++++|.|+ |+.|.+++..|.+.|++|++++|+.++++++.+.+
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTL   49 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            46789999998 67999999999999999999999999888775554

>PRK12939 short chain dehydrogenase; Provisional

Probab=95.33  E-value=0.045  Score=53.23  Aligned_cols=46  Identities=35%  Similarity=0.406  Sum_probs=41.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++++++|+|+ |+.|++++..|.+.|++|.+++|+.++++.+.+.+
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   51 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAAL   51 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            56899999997 78999999999999999999999999888877665

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.32  E-value=0.042  Score=53.34  Aligned_cols=45  Identities=24%  Similarity=0.348  Sum_probs=39.7

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++|+++|.|+ |+.|++++..|.+.|++|++++|+.++.+++.+.+
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAEL   50 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3578999987 88999999999999999999999999888776654

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=95.32  E-value=0.039  Score=63.29  Aligned_cols=114  Identities=19%  Similarity=0.156  Sum_probs=72.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      +++.|||+|.+|.+++..|.+.|.  +|++++|+.++++.. .+.+.......++.+ .+.++|+||.|+|......   
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a-~~~g~~~~~~~~~~~-~~~~aDvVilavp~~~~~~---   78 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELA-VSLGVIDRGEEDLAE-AVSGADVIVLAVPVLAMEK---   78 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHH-HHCCCCCcccCCHHH-HhcCCCEEEECCCHHHHHH---
Confidence            679999999999999999999983  899999999887654 344432111222322 3467899999998642111   


Q ss_pred             CCCC--hhhhcCCCEEEEEeeCCCchHHHHHHHH----CCCeeeccHHHH
Q 010101          446 SPVP--KEALKAYELVFDAVYTPRNTRLLREAAE----VGATVVSGVEMF  489 (518)
Q Consensus       446 ~~~~--~~~l~~~~~v~Di~Y~P~~T~ll~~A~~----~G~~~i~G~~ml  489 (518)
                       .+.  ...++++.++.|+.-.+.  ..++..++    .+.+++++..|.
T Consensus        79 -vl~~l~~~~~~~~ii~d~~svk~--~~~~~l~~~~~~~~~r~~~~hPm~  125 (735)
T PRK14806         79 -VLADLKPLLSEHAIVTDVGSTKG--NVVDAARAVFGELPAGFVPGHPIA  125 (735)
T ss_pred             -HHHHHHHhcCCCcEEEEcCCCch--HHHHHHHHhccccCCeEEecCCcC
Confidence             011  112456778989976532  22333332    245677777765

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.042  Score=52.86  Aligned_cols=46  Identities=35%  Similarity=0.524  Sum_probs=39.2

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++|+++|+|+ |+.|++++..|.+.|++|.+++|+.++..+..+.+
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   51 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGV   51 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHH
Confidence            56899999998 78999999999999999999999988766655443

>PRK08643 acetoin reductase; Validated

Probab=95.28  E-value=0.042  Score=53.87  Aligned_cols=45  Identities=38%  Similarity=0.445  Sum_probs=39.6

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +|+++|+|+ ||.|++++..|.+.|++|.+++|+.++.+++++.+.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~   47 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS   47 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            578999987 689999999999999999999999988888776653

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.24  E-value=0.039  Score=55.59  Aligned_cols=37  Identities=19%  Similarity=0.291  Sum_probs=34.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAK  404 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~  404 (518)
                      +++.|||+|-||.+++..++..|++|+++++++++++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~   40 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVD   40 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHH
Confidence            4799999999999999999999999999999998875

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=95.24  E-value=0.044  Score=54.08  Aligned_cols=47  Identities=26%  Similarity=0.508  Sum_probs=38.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFN-RNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~n-Rt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ +|.|++++..|.+.|++|+++. |+.++++++++.+
T Consensus         5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~   53 (260)
T PRK08416          5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDL   53 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            467899999998 6899999999999999988875 5677777666554

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.23  E-value=0.047  Score=53.01  Aligned_cols=71  Identities=14%  Similarity=0.139  Sum_probs=47.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCcccccc--cccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE-RAKALADAVSGEALHFE--YLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~-ka~~la~~~~~~~~~~~--~l~~~~~~~~divInatp  436 (518)
                      ..+++++|||+|+|.+|..=+..|.+.|++|+|++.+.. ..+++++.-.   +.|.  +.....+.++++||-||.
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~---i~~~~r~~~~~dl~g~~LViaATd   94 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGN---LKLIKGNYDKEFIKDKHLIVIATD   94 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCC---EEEEeCCCChHHhCCCcEEEECCC
Confidence            456789999999999998888899999999999998753 3444543211   1111  111102345677887774

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.23  E-value=0.051  Score=52.69  Aligned_cols=46  Identities=37%  Similarity=0.548  Sum_probs=40.2

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++++++|.|+ |+.|++++..|.+.|++|.+++|+.++.+++++++
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~   51 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEV   51 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45789999987 68999999999999999999999998887776655

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.22  E-value=0.062  Score=57.69  Aligned_cols=72  Identities=25%  Similarity=0.236  Sum_probs=55.5

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCcc-----cccccccccCCCCccEEEEcCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV-SGEA-----LHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~-~~~~-----~~~~~l~~~~~~~~divInatp  436 (518)
                      ...++++|+|+|..|+.++..|.+.|.+|+++++++++.+++.+.+ +...     ...+.|.+....++|.+|.+++
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~  306 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN  306 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC
Confidence            4568999999999999999999999999999999999998887764 2221     1222233334678899998776

>PRK05993 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.041  Score=54.95  Aligned_cols=42  Identities=29%  Similarity=0.336  Sum_probs=38.2

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALAD  408 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~  408 (518)
                      +++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~   46 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA   46 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            578999998 889999999999999999999999998877754

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=95.21  E-value=0.017  Score=62.32  Aligned_cols=102  Identities=22%  Similarity=0.230  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----Cc-ccccccccccCCCCccEEEEcCCCCCCCCCCCCCCC--h
Q 010101          378 AGRALAFGAKSRGARVIIFNRNYERAKALADAVS----GE-ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVP--K  450 (518)
Q Consensus       378 ~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~----~~-~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~--~  450 (518)
                      ||+.++..|.+.|++|+++|||+++++++++..+    .. ..+++++.+ .+..+++||-+.|.|-.  ++.. +.  .
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~-~l~~~~~Ii~mv~~g~~--v~~V-i~~l~   76 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVA-SLEKPRKILLMVKAGAP--VDAV-IEQLL   76 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHh-hCCCCCEEEEECCCchH--HHHH-HHHHH
Confidence            6889999999999999999999999999987533    11 113333322 23457999987776521  1111 11  1


Q ss_pred             hhhcCCCEEEEEee-CCCchH-HHHHHHHCCCeee
Q 010101          451 EALKAYELVFDAVY-TPRNTR-LLREAAEVGATVV  483 (518)
Q Consensus       451 ~~l~~~~~v~Di~Y-~P~~T~-ll~~A~~~G~~~i  483 (518)
                      ..+.++.+++|..- .|..|. ..++++++|+.++
T Consensus        77 ~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fv  111 (459)
T PRK09287         77 PLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFI  111 (459)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEE
Confidence            22567889999974 455554 3345567776543

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.20  E-value=0.1  Score=55.09  Aligned_cols=99  Identities=17%  Similarity=0.233  Sum_probs=62.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC------------cccccc---cccccCCCCccEEEE
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG------------EALHFE---YLHEFFPEKGMILAN  433 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~------------~~~~~~---~l~~~~~~~~divIn  433 (518)
                      +|.|+|+|-+|..++..++. |++|+.++++.++.+++.+....            ....+.   +..+ ...++|++|-
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~-~~~~ad~vii   79 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE-AYRDADYVII   79 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh-hhcCCCEEEE
Confidence            58899999999999977764 89999999999999888653211            000111   1111 2467899999


Q ss_pred             cCCCCCCCCCCC---CCCCh-----hhhcCCCEEEEEeeCCCch
Q 010101          434 ASAIGMEPNSDQ---SPVPK-----EALKAYELVFDAVYTPRNT  469 (518)
Q Consensus       434 atp~g~~~~~~~---~~~~~-----~~l~~~~~v~Di~Y~P~~T  469 (518)
                      |+|-........   ..+..     ..++++.+|++.+.-|..|
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgt  123 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGF  123 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCch
Confidence            987543211000   00100     0135678888888876543

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=95.19  E-value=0.04  Score=56.35  Aligned_cols=69  Identities=30%  Similarity=0.346  Sum_probs=53.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      .-+.||+++|.|.|-+||.++..|...|++|.|+.-++-+|-+.+= -|.+..+.++    ....+|++|-||.
T Consensus       205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~M-dGf~V~~m~~----Aa~~gDifiT~TG  273 (420)
T COG0499         205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAM-DGFRVMTMEE----AAKTGDIFVTATG  273 (420)
T ss_pred             eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhh-cCcEEEEhHH----hhhcCCEEEEccC
Confidence            5678999999999999999999999999999999999988755331 1334444443    3456799997773

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.18  E-value=0.11  Score=55.76  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=32.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      +.+++++|+|.|+.|++++..|.+.|++|++++...
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            347899999999999999999999999999999753

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.18  E-value=0.042  Score=54.34  Aligned_cols=47  Identities=21%  Similarity=0.427  Sum_probs=39.3

Q ss_pred             ccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRN---YERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt---~~ka~~la~~~  410 (518)
                      .+++|.++|.|+   +|.|++++..|++.|++|++++|+   .++.+++++++
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~   56 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL   56 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc
Confidence            356899999998   599999999999999999998765   45667777766

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.18  E-value=0.05  Score=52.97  Aligned_cols=45  Identities=31%  Similarity=0.479  Sum_probs=39.7

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++++|.|+ |+.|++++..|.+.|++|++++|+.++.+++.+.+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   47 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADI   47 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH
Confidence            5789999997 78999999999999999999999999888776554

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.15  E-value=0.057  Score=53.01  Aligned_cols=48  Identities=27%  Similarity=0.493  Sum_probs=41.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|+|+ ||.|++++..|.+.|++|.+++|+.++.+++++++
T Consensus         7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l   55 (255)
T PRK06113          7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI   55 (255)
T ss_pred             cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence            3467899999987 68999999999999999999999999888877655

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.15  E-value=0.054  Score=53.26  Aligned_cols=47  Identities=28%  Similarity=0.410  Sum_probs=41.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++++++|.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+.+
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i   56 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHL   56 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999986 78999999999999999999999998887776554

>PRK08251 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.053  Score=52.83  Aligned_cols=44  Identities=20%  Similarity=0.392  Sum_probs=38.8

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++++|.|+ ||.|++++..|.+.|++|.++.|+.++.+++.+.+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   46 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAEL   46 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            578999986 78999999999999999999999999888776554

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=95.13  E-value=1.9  Score=43.34  Aligned_cols=200  Identities=12%  Similarity=0.076  Sum_probs=120.2

Q ss_pred             HHHHHhhCCCEEEEEecc--------CCCCcHHHHHHHhcC-CCCcEEEEeecCCCCCCCCCCcHHHHHHHHHHHhhcCC
Q 010101           27 IEQAKVEGADLVELCIDS--------MEFSHISEVDKLIQH-PTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDV   97 (518)
Q Consensus        27 ~~~~~~~g~D~vElRlD~--------l~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll~~~~~~g~   97 (518)
                      +....+.|.|.||.=.-.        ...++.+.++.+++. .+.++..-.|....=|..+.. .+-..+.++.+.+.|+
T Consensus        27 a~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p-~~~~~~di~~~~~~g~  105 (275)
T cd07937          27 AEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYP-DDVVELFVEKAAKNGI  105 (275)
T ss_pred             HHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCC-cHHHHHHHHHHHHcCC
Confidence            344445799999987432        123444566666653 467888888865544443333 4567778889999999


Q ss_pred             cEEEEecCCCC-chhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccC--CcccHHHHHH
Q 010101           98 EFVEMDYEVAS-DPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVD--SITDLAPVFE  173 (518)
Q Consensus        98 ~yvDiEl~~~~-~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~--~~~D~~~l~~  173 (518)
                      ++|-|-....+ +......+ ++..+.++..+.........+.+.+.+..+++.+.|+|.+-++=|.-  ++.++.++.+
T Consensus       106 ~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~  185 (275)
T cd07937         106 DIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVK  185 (275)
T ss_pred             CEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence            99888554332 22222223 45566677665543202233677899999999999999999886664  5778888877


Q ss_pred             HhccC-CCCEEE-----EecCCccchhhhcCCCCCCcccccccCC-CCCCCCCCHHHHHHHhhh
Q 010101          174 MLTHC-QVPLIA-----LAVGSRGLISQLLGPKFGGFLVYGSLGG-KSVPGLPTLVSLKQVYQL  230 (518)
Q Consensus       174 ~~~~~-~~p~i~-----~~mG~~G~~sRi~~~~~gs~~ty~~~~~-~sApGQ~~~~~l~~~~~~  230 (518)
                      .+.+. +.|+-.     ++|+.   ..-+.+-..|....-+++.+ +.-.|+.+++++...++.
T Consensus       186 ~l~~~~~~~l~~H~Hnd~GlA~---aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~  246 (275)
T cd07937         186 ALKKEVGLPIHLHTHDTSGLAV---ATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRG  246 (275)
T ss_pred             HHHHhCCCeEEEEecCCCChHH---HHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHc
Confidence            75542 333321     11222   22222222355444454433 244889998888766543

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK14031 glutamate dehydrogenase; Provisional

Probab=95.13  E-value=0.19  Score=53.75  Aligned_cols=130  Identities=16%  Similarity=0.207  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEE-Ee----------CCHHHHH-
Q 010101          337 DCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVII-FN----------RNYERAK-  404 (518)
Q Consensus       337 D~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i-~n----------Rt~~ka~-  404 (518)
                      -+.|...+++..++.. |        .+++|++|+|.|.|-+|..++..|.+.|++|+. .+          -+.++.. 
T Consensus       207 Tg~Gv~~~~~~~~~~~-g--------~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~  277 (444)
T PRK14031        207 TGYGNIYFLMEMLKTK-G--------TDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDY  277 (444)
T ss_pred             cHHHHHHHHHHHHHhc-C--------CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence            3778888887766543 3        578999999999999999999999999998775 44          3444332 


Q ss_pred             --HHHHHhc-----------CcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChh---hhcCC--CEEEEEeeCC
Q 010101          405 --ALADAVS-----------GEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKE---ALKAY--ELVFDAVYTP  466 (518)
Q Consensus       405 --~la~~~~-----------~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~---~l~~~--~~v~Di~Y~P  466 (518)
                        ++....+           ...++-+++   ....+|++|-|.--+        .+..+   .++..  .+|..-.-+|
T Consensus       278 ~~~~k~~~~~~v~~~~~~~ga~~i~~d~~---~~~~cDIliPaAl~n--------~I~~~na~~l~a~g~~~V~EgAN~P  346 (444)
T PRK14031        278 IMELKNLYRGRIREYAEKYGCKYVEGARP---WGEKGDIALPSATQN--------ELNGDDARQLVANGVIAVSEGANMP  346 (444)
T ss_pred             HHHHHhhcCCchhhhHhhcCCEEcCCccc---ccCCCcEEeeccccc--------ccCHHHHHHHHhcCCeEEECCCCCC
Confidence              1111111           111111111   124588888554321        13322   23332  4777877777


Q ss_pred             CchHHHHHHHHCCCeeeccH
Q 010101          467 RNTRLLREAAEVGATVVSGV  486 (518)
Q Consensus       467 ~~T~ll~~A~~~G~~~i~G~  486 (518)
                      ....-.+.-+++|+.+++..
T Consensus       347 ~t~eA~~~L~~rgI~~~PD~  366 (444)
T PRK14031        347 STPEAIKVFQDAKILYAPGK  366 (444)
T ss_pred             CCHHHHHHHHHCCcEEeChh
Confidence            54444444466777665543

>PRK08263 short chain dehydrogenase; Provisional

Probab=95.12  E-value=0.099  Score=52.04  Aligned_cols=72  Identities=26%  Similarity=0.338  Sum_probs=51.2

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCccEEE
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGMILA  432 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~divI  432 (518)
                      +++++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+.++...    .++.+   +...      .....|++|
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi   82 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV   82 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            578999987 789999999999999999999999998887776654221    11111   1100      123579999


Q ss_pred             EcCCCC
Q 010101          433 NASAIG  438 (518)
Q Consensus       433 natp~g  438 (518)
                      ++....
T Consensus        83 ~~ag~~   88 (275)
T PRK08263         83 NNAGYG   88 (275)
T ss_pred             ECCCCc
Confidence            987653

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.10  E-value=0.052  Score=52.71  Aligned_cols=46  Identities=35%  Similarity=0.539  Sum_probs=39.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +.+++++|.|+ |+.|++++..|.+.|++|+++.|+.++...+++.+
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l   50 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELV   50 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45789999996 78999999999999999999999988776666554

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=95.09  E-value=0.15  Score=52.84  Aligned_cols=106  Identities=20%  Similarity=0.157  Sum_probs=66.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC--CC-eEEEEeCCHHHHHHHHHHhcCc-ccccccccccCCCCccEEEEcCC----CC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSR--GA-RVIIFNRNYERAKALADAVSGE-ALHFEYLHEFFPEKGMILANASA----IG  438 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~--G~-~v~i~nRt~~ka~~la~~~~~~-~~~~~~l~~~~~~~~divInatp----~g  438 (518)
                      ..+|.|+|+ ++|+.-+.++.+.  ++ -+.|++|+.++++++|++++.. +.+++++    +.+.|+++.++|    .+
T Consensus         3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eel----l~d~Di~~V~ipt~~P~~   77 (343)
T TIGR01761         3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEEL----PDDIDIACVVVRSAIVGG   77 (343)
T ss_pred             CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHH----hcCCCEEEEEeCCCCCCc
Confidence            358999999 7898888888775  46 5789999999999999999854 2244443    223344444333    22


Q ss_pred             CCCCCCCCCCChhhhcCCC-EEEEEeeCCC----chHHHHHHHHCCCeeecc
Q 010101          439 MEPNSDQSPVPKEALKAYE-LVFDAVYTPR----NTRLLREAAEVGATVVSG  485 (518)
Q Consensus       439 ~~~~~~~~~~~~~~l~~~~-~v~Di~Y~P~----~T~ll~~A~~~G~~~i~G  485 (518)
                      ...     ++....+..+. ++++   +|-    -..+++.|+++|+.+.-+
T Consensus        78 ~H~-----e~a~~aL~aGkHVL~E---KPla~~Ea~el~~~A~~~g~~l~v~  121 (343)
T TIGR01761        78 QGS-----ALARALLARGIHVLQE---HPLHPRDIQDLLRLAERQGRRYLVN  121 (343)
T ss_pred             cHH-----HHHHHHHhCCCeEEEc---CCCCHHHHHHHHHHHHHcCCEEEEE
Confidence            211     23333454432 2222   332    356778888888876544

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.08  E-value=0.05  Score=53.00  Aligned_cols=42  Identities=29%  Similarity=0.428  Sum_probs=37.8

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADA  409 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~  409 (518)
                      ++++|.|+ ||.|++++..|.+.|++|.+++|+.++.+++.+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~   44 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ   44 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence            57899986 7899999999999999999999999998888664

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.08  E-value=0.052  Score=52.46  Aligned_cols=69  Identities=22%  Similarity=0.320  Sum_probs=49.8

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--ccc---ccccc---CCCCccEEEEcCCC
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFE---YLHEF---FPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~---~l~~~---~~~~~divInatp~  437 (518)
                      +++|.|+ ||.|++++..|.+.|++|++++|+.++++++++.++...+  ++.   ++.+.   .....|++||+...
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~   79 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAP   79 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCc
Confidence            5899987 7899999999999999999999999999888877643322  111   11110   11247999997653

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.07  E-value=0.095  Score=60.79  Aligned_cols=94  Identities=16%  Similarity=0.189  Sum_probs=57.4

Q ss_pred             cEEEEEccchhHHHH-HHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRAL-AFGAKSRGARVIIFNRNYER-AKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       368 k~vlvlGaGg~arai-a~~L~~~G~~v~i~nRt~~k-a~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      ++++|+|.||+|.++ |..|.++|++|++.+.+... .++|. ..+.... .....+ .+.++|+||-  ++|       
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~-~~gi~~~-~g~~~~-~~~~~d~vV~--Spg-------   72 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLK-AKGARFF-LGHQEE-HVPEDAVVVY--SSS-------   72 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHH-HCCCEEe-CCCCHH-HcCCCCEEEE--CCC-------
Confidence            479999999999999 88999999999999975432 22221 1121110 000000 0112333331  111       


Q ss_pred             CCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHH
Q 010101          446 SPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQ  492 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Q  492 (518)
                                         -|...|.+++|+++|++++.-.+++...
T Consensus        73 -------------------I~~~~p~~~~a~~~gi~v~~~~el~~~~  100 (809)
T PRK14573         73 -------------------ISKDNVEYLSAKSRGNRLVHRAELLAEL  100 (809)
T ss_pred             -------------------cCCCCHHHHHHHHCCCcEEeHHHHHHHH
Confidence                               1235678899999999999999987443

>PRK08267 short chain dehydrogenase; Provisional

Probab=95.07  E-value=0.051  Score=53.50  Aligned_cols=44  Identities=34%  Similarity=0.392  Sum_probs=39.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      |+++|+|+ ||.|++++..|.+.|++|.+++|+.++.+++.+.++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   46 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG   46 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Confidence            57999987 789999999999999999999999999988877654

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.07  E-value=0.058  Score=52.69  Aligned_cols=45  Identities=38%  Similarity=0.567  Sum_probs=40.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++++|.|+ |+.|++++..|.+.|++|.+++|+.++.+++..++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   48 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEAL   48 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence            5689999996 88999999999999999999999999888876665

>PRK07024 short chain dehydrogenase; Provisional

Probab=95.07  E-value=0.052  Score=53.42  Aligned_cols=45  Identities=27%  Similarity=0.344  Sum_probs=39.6

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +++++|.|+ ||.|++++..|++.|++|++++|+.++++++.+.+.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~   47 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP   47 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc
Confidence            468999986 789999999999999999999999999888877653

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.07  E-value=0.0065  Score=53.17  Aligned_cols=92  Identities=21%  Similarity=0.113  Sum_probs=60.3

Q ss_pred             EEEEEc-cchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC----cccccccccccCCCCccEEEEcCCCCCCC
Q 010101          369 IFVLVG-AGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSG----EALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       369 ~vlvlG-aGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~----~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ||.|+| +|-+|+.++..|.+.-.  -+.++.|+.+..+.+...++.    ....+++.......+.|+++.|+|.+...
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            689999 68899999999988543  477888887666677766541    12233331111246789999999865321


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeC
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYT  465 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~  465 (518)
                           .+....+..+..|+|+...
T Consensus        81 -----~~~~~~~~~g~~ViD~s~~   99 (121)
T PF01118_consen   81 -----ELAPKLLKAGIKVIDLSGD   99 (121)
T ss_dssp             -----HHHHHHHHTTSEEEESSST
T ss_pred             -----HHHHHHhhCCcEEEeCCHH
Confidence                 1223346778899999765

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08303 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.046  Score=55.71  Aligned_cols=37  Identities=38%  Similarity=0.650  Sum_probs=33.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .+++|.++|.|+ +|.|++++.+|++.|++|++++|+.
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~   42 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRST   42 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence            467899999998 5899999999999999999999973

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.06  E-value=0.054  Score=55.17  Aligned_cols=69  Identities=22%  Similarity=0.295  Sum_probs=51.5

Q ss_pred             EEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCccc-----cc---ccccccCCCCccEEEEcCCCCC
Q 010101          370 FVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEAL-----HF---EYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       370 vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~~-----~~---~~l~~~~~~~~divInatp~g~  439 (518)
                      +.|||+|++|.++++.|+..|.  ++++++++.++++.++.++..-..     .+   .+. + ...++|+||.|....-
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~-~-~l~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDY-A-DAADADIVVITAGAPR   78 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCH-H-HhCCCCEEEEcCCCCC
Confidence            4699999999999999999885  799999999999988877652110     11   111 2 3567999999886543


Q ss_pred             C
Q 010101          440 E  440 (518)
Q Consensus       440 ~  440 (518)
                      .
T Consensus        79 ~   79 (300)
T cd00300          79 K   79 (300)
T ss_pred             C
Confidence            3

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=95.05  E-value=0.039  Score=55.28  Aligned_cols=71  Identities=20%  Similarity=0.169  Sum_probs=59.4

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      .+++|+|.|||.|-=|+|=+..|...|.+|.|-.|.-..+-+.|++-|.+..++++    ...++|+|++-+|--
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~e----a~k~ADvim~L~PDe   85 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEE----AAKRADVVMILLPDE   85 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHH----HhhcCCEEEEeCchh
Confidence            57899999999999999999999999999999999888877778776666555554    456789999988853

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.03  E-value=0.057  Score=52.98  Aligned_cols=45  Identities=33%  Similarity=0.479  Sum_probs=40.2

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +++++|.|+ |+.|++++..|.+.|++|++++|+.++++.+++.+.
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~   47 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG   47 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            468999998 789999999999999999999999999888887653

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.03  E-value=0.051  Score=54.32  Aligned_cols=43  Identities=33%  Similarity=0.546  Sum_probs=37.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +|.++|.|+||.|++++..|. .|++|++++|+.++++++.+++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l   44 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTL   44 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence            478899999999999999996 7999999999998887776655

>PRK08628 short chain dehydrogenase; Provisional

Probab=94.99  E-value=0.052  Score=53.29  Aligned_cols=47  Identities=23%  Similarity=0.475  Sum_probs=39.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .++++++++|+|+ ||.|++++..|.+.|++|.++.|+.++. ++.+.+
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~   50 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEEL   50 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHH
Confidence            3578899999997 6899999999999999999999998776 444443

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.97  E-value=0.11  Score=55.71  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=30.2

Q ss_pred             CC-cEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCH
Q 010101          366 AG-KIFVLVGAGGAGRALAFGAKSR--GARVIIFNRNY  400 (518)
Q Consensus       366 ~~-k~vlvlGaGg~araia~~L~~~--G~~v~i~nRt~  400 (518)
                      .+ ++++|+|.|++|++++..|.+.  |++|++.+...
T Consensus         5 ~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~   42 (438)
T PRK04663          5 QGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE   42 (438)
T ss_pred             cCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            45 7899999999999999999877  47899999754

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=94.96  E-value=0.81  Score=43.62  Aligned_cols=130  Identities=12%  Similarity=0.123  Sum_probs=86.8

Q ss_pred             eEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcHHHHHHHhcC-CCCcEEEEeecCCCCCCCCCCcHHHHHH
Q 010101           10 LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQH-PTLPAIVSYRLKSSRKSSDEACKNTCLQ   87 (518)
Q Consensus        10 ~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~~   87 (518)
                      ++|+.|-..+.++++.-++.+ ..|.|++|+-.-++. +. .+.+..+++. .+.++++..... +      . .. +  
T Consensus         1 ~l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d------~-~~-~--   67 (206)
T TIGR03128         1 KLQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-D------A-GE-Y--   67 (206)
T ss_pred             CeEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-c------c-hH-H--
Confidence            378999999999999887765 788999998544443 22 2467788765 356777766542 1      1 11 1  


Q ss_pred             HHHHHhhcCCcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEE
Q 010101           88 VLRRALDLDVEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLE  159 (518)
Q Consensus        88 ll~~~~~~g~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia  159 (518)
                      -++.+.+.|+++|=+-...+...+.++.+ .++.+.++++..++.  .|     ..+....+.++|+|++|+-
T Consensus        68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~--~t-----~~~~~~~~~~~g~d~v~~~  133 (206)
T TIGR03128        68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINV--KD-----KVKRAKELKELGADYIGVH  133 (206)
T ss_pred             HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCC--CC-----hHHHHHHHHHcCCCEEEEc
Confidence            35677889999988777665433344444 455789999876654  22     3344455567799999883

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=94.94  E-value=0.058  Score=53.17  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=37.7

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   44 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL   44 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            6899987 68999999999999999999999999888777665

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=94.91  E-value=0.98  Score=45.76  Aligned_cols=83  Identities=20%  Similarity=0.246  Sum_probs=60.5

Q ss_pred             eEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEecc---------CCCCc---HHHHHHHhcCCCCcEEEEeecCCCCCCC
Q 010101           10 LVCTQLECETTEEMQASIEQAKVEGADLVELCIDS---------MEFSH---ISEVDKLIQHPTLPAIVSYRLKSSRKSS   77 (518)
Q Consensus        10 ~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~---------l~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~   77 (518)
                      .++++|.+.+.++....++.+.+.|+|.||+=+=+         +..++   .+.+..+++..+.|+.+-++..      
T Consensus        91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------  164 (296)
T cd04740          91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN------  164 (296)
T ss_pred             cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC------
Confidence            46689999999999888888877899999995432         21122   2456667766789999888631      


Q ss_pred             CCCcHHHHHHHHHHHhhcCCcEEEE
Q 010101           78 DEACKNTCLQVLRRALDLDVEFVEM  102 (518)
Q Consensus        78 ~~~~~~~~~~ll~~~~~~g~~yvDi  102 (518)
                          .++-.++.+.+.+.|+|+|++
T Consensus       165 ----~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         165 ----VTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             ----chhHHHHHHHHHHcCCCEEEE
Confidence                234566777788899999876

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=94.90  E-value=0.064  Score=54.84  Aligned_cols=45  Identities=24%  Similarity=0.358  Sum_probs=40.4

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhc
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRG-ARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G-~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +++++|.|+ +|+|++++..|.+.| ++|++++|+.+++++++++++
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~   49 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLG   49 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence            678999988 689999999999999 799999999999988887764

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK07904 short chain dehydrogenase; Provisional

Probab=94.90  E-value=0.053  Score=53.49  Aligned_cols=44  Identities=18%  Similarity=0.211  Sum_probs=37.4

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCHHH-HHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRG-ARVIIFNRNYER-AKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G-~~v~i~nRt~~k-a~~la~~~  410 (518)
                      +++++|.|+ ||.|++++..|.+.| ++|+++.|+.++ .+++++++
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l   54 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQM   54 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHH
Confidence            678999988 689999999999986 699999999886 66666555

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.89  E-value=0.074  Score=54.51  Aligned_cols=69  Identities=13%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc-------ccc-ccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA-------LHF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~-------~~~-~~l~~~~~~~~divInatp~  437 (518)
                      .++.|+|+|.+|.++++.|...|.  ++.+++++.++++..+.++....       +.. .+.+  ...++|+||.|...
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~--~~~~adivvitaG~   81 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS--VTANSKVVIVTAGA   81 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH--HhCCCCEEEECCCC
Confidence            589999999999999999998886  89999999888877776664211       111 1222  25679999987654


Q ss_pred             C
Q 010101          438 G  438 (518)
Q Consensus       438 g  438 (518)
                      .
T Consensus        82 ~   82 (312)
T cd05293          82 R   82 (312)
T ss_pred             C
Confidence            3

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.89  E-value=0.063  Score=49.64  Aligned_cols=49  Identities=31%  Similarity=0.533  Sum_probs=44.9

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC
Q 010101          364 PIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG  412 (518)
Q Consensus       364 ~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~  412 (518)
                      .+.|+.+++.|+| |.|++++.+|++.|++|.-+.|+++...+|.++...
T Consensus         4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~   53 (245)
T KOG1207|consen    4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPS   53 (245)
T ss_pred             cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCc
Confidence            4678999999998 899999999999999999999999999999887654

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.88  E-value=0.078  Score=54.14  Aligned_cols=42  Identities=26%  Similarity=0.346  Sum_probs=37.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA  409 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~  409 (518)
                      .+++|+|+|++|.-+++.|.+.|.+|+++.|..++.+++-++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~   44 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA   44 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc
Confidence            479999999999999999999999999999998888777543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.87  E-value=0.033  Score=49.54  Aligned_cols=34  Identities=24%  Similarity=0.542  Sum_probs=30.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~  400 (518)
                      +++|+|+|+|+.|..++..|+..|+ +++|++.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            4799999999999999999999999 999999764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=94.86  E-value=0.098  Score=55.98  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=29.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      +++|+|.||+|++++..|.+.|++|++.++...
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~   33 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN   33 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence            478999999999999999999999999997543

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.86  E-value=0.088  Score=51.66  Aligned_cols=45  Identities=31%  Similarity=0.493  Sum_probs=35.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-NYERAKALAD  408 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-t~~ka~~la~  408 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|.+..| +.+.++++.+
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~   50 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELRE   50 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHh
Confidence            356899999987 78999999999999998877655 4445555543

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.86  E-value=0.071  Score=51.44  Aligned_cols=45  Identities=42%  Similarity=0.671  Sum_probs=39.6

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++++|.|+ |+.|+.++..|.+.|++|.+++|+.++.+.+...+
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~   49 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAEL   49 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHH
Confidence            4689999997 78999999999999999999999998877776654

>PRK06914 short chain dehydrogenase; Provisional

Probab=94.85  E-value=0.069  Score=53.15  Aligned_cols=44  Identities=30%  Similarity=0.360  Sum_probs=38.4

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+..
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   47 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQA   47 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Confidence            578999997 78999999999999999999999998887776543

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=94.80  E-value=0.071  Score=52.36  Aligned_cols=44  Identities=27%  Similarity=0.447  Sum_probs=38.4

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +|+++|.|+ |+.|++++..|++.|++|.+++|+.++.+++++.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~   46 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEI   46 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            578999988 57999999999999999999999988887776554

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=94.79  E-value=0.055  Score=55.22  Aligned_cols=40  Identities=23%  Similarity=0.177  Sum_probs=34.5

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      +|++||.|+ |+.|++++..|.+.|++|+++.|+.++.+..
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~   45 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKT   45 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhH
Confidence            689999997 7899999999999999999998987655443

>PRK07102 short chain dehydrogenase; Provisional

Probab=94.79  E-value=0.07  Score=51.90  Aligned_cols=43  Identities=35%  Similarity=0.480  Sum_probs=38.1

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++++.+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~   45 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDL   45 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence            57999986 88999999999999999999999999887776654

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.78  E-value=0.061  Score=48.50  Aligned_cols=38  Identities=26%  Similarity=0.467  Sum_probs=34.4

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 010101          370 FVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD  408 (518)
Q Consensus       370 vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~  408 (518)
                      ++|+|+|.+|...++.|++.|.+|+++.|.. +++++.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~   38 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE   38 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh
Confidence            6899999999999999999999999999998 8777644

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=94.77  E-value=0.078  Score=51.32  Aligned_cols=74  Identities=26%  Similarity=0.335  Sum_probs=53.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCccE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGMI  430 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~di  430 (518)
                      +++++++|.|+ |+.|++++..|.+.|+.|.+.+|+.++.+++.+.++...    .++.+   +...      .....|+
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI   83 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            46789999996 789999999999999999999999999888877654321    11111   1110      1245799


Q ss_pred             EEEcCCCC
Q 010101          431 LANASAIG  438 (518)
Q Consensus       431 vInatp~g  438 (518)
                      ||++....
T Consensus        84 vi~~ag~~   91 (245)
T PRK12936         84 LVNNAGIT   91 (245)
T ss_pred             EEECCCCC
Confidence            99997653

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=94.76  E-value=0.053  Score=52.75  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNR  398 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nR  398 (518)
                      +++.+|+|+|.||+|.-++.+|++-|+ +|++++-
T Consensus        28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~   62 (263)
T COG1179          28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM   62 (263)
T ss_pred             HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence            567899999999999999999999999 8888764

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.74  E-value=0.076  Score=51.44  Aligned_cols=46  Identities=39%  Similarity=0.615  Sum_probs=39.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIF-NRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~-nRt~~ka~~la~~~  410 (518)
                      +.+++++|+|+ |+.|+.++..|.+.|++|+++ +|+.++.+++.+.+
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~   50 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEI   50 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            56789999987 899999999999999998888 99988887776654

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=94.70  E-value=0.053  Score=55.32  Aligned_cols=47  Identities=19%  Similarity=0.317  Sum_probs=39.4

Q ss_pred             cccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++||.++|.|+   .|.|++++..|++.|++|.+ .|+.++.++++..+
T Consensus         5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~   54 (303)
T PLN02730          5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSL   54 (303)
T ss_pred             cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhh
Confidence            3588999999999   89999999999999999988 78777766665433

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.65  E-value=0.054  Score=54.38  Aligned_cols=77  Identities=27%  Similarity=0.459  Sum_probs=55.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----c-c----cccccccc---------c
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG----E-A----LHFEYLHE---------F  423 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~----~-~----~~~~~l~~---------~  423 (518)
                      ..+.||.|+|-|| .|.|++.|+.|++.|+++.++.|..++.+.+++++..    + .    .++.+.++         .
T Consensus         8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~   87 (282)
T KOG1205|consen    8 ERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR   87 (282)
T ss_pred             HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence            3567899999999 5999999999999999999999988888887665532    2 1    12222111         1


Q ss_pred             CCCCccEEEEcCCCCC
Q 010101          424 FPEKGMILANASAIGM  439 (518)
Q Consensus       424 ~~~~~divInatp~g~  439 (518)
                      ...+.|++||....+.
T Consensus        88 ~fg~vDvLVNNAG~~~  103 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISL  103 (282)
T ss_pred             hcCCCCEEEecCcccc
Confidence            3567899999776553

>PRK08017 oxidoreductase; Provisional

Probab=94.64  E-value=0.07  Score=52.16  Aligned_cols=40  Identities=28%  Similarity=0.414  Sum_probs=36.1

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALA  407 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la  407 (518)
                      ++++|+|+ |+.|++++..|.+.|++|.++.|+.++.+.+.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~   43 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN   43 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence            57999998 99999999999999999999999998876654

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=94.63  E-value=1.5  Score=41.84  Aligned_cols=123  Identities=18%  Similarity=0.181  Sum_probs=68.8

Q ss_pred             cccCCceEEEeecCCCH---HHHHHHHHHHHhhCCCEEEEEeccCCC-CcHHHHH---HHhcCCCCcEEEEeecCCCCCC
Q 010101            4 AAKNSLLVCTQLECETT---EEMQASIEQAKVEGADLVELCIDSMEF-SHISEVD---KLIQHPTLPAIVSYRLKSSRKS   76 (518)
Q Consensus         4 ~~~~~~~icv~l~~~~~---~~~~~~~~~~~~~g~D~vElRlD~l~~-~~~~~l~---~l~~~~~~PiI~T~R~~~eGG~   76 (518)
                      |+...|.+. .||.+..   .+..+.++.+.+.|+|++++|.=.+.. ...+.+.   .+....+.|++..         
T Consensus         2 ~~~~~~~~~-~it~~~~~~~~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------   71 (212)
T PRK00043          2 MMMKLLRLY-LITDSRDDSGRDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN---------   71 (212)
T ss_pred             CCCCCCCEE-EEECCcccccccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe---------
Confidence            444545543 2333322   446666777778899999999754441 1111222   2323456777752         


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEE
Q 010101           77 SDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVM  156 (518)
Q Consensus        77 ~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadiv  156 (518)
                         +       .++.+.+.|+++|=+......  ...+...+..+.++-+|-|+.       +|    ..++...|+|++
T Consensus        72 ---~-------~~~~a~~~gad~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~t~-------~e----~~~a~~~gaD~v  128 (212)
T PRK00043         72 ---D-------RVDLALAVGADGVHLGQDDLP--VADARALLGPDAIIGLSTHTL-------EE----AAAALAAGADYV  128 (212)
T ss_pred             ---C-------hHHHHHHcCCCEEecCcccCC--HHHHHHHcCCCCEEEEeCCCH-------HH----HHHHhHcCCCEE
Confidence               1       245667789998777554322  122222234566777777732       23    344447899999


Q ss_pred             EEE
Q 010101          157 KLE  159 (518)
Q Consensus       157 Kia  159 (518)
                      ++-
T Consensus       129 ~~~  131 (212)
T PRK00043        129 GVG  131 (212)
T ss_pred             EEC
Confidence            983

>PRK14851 hypothetical protein; Provisional

Probab=94.63  E-value=0.052  Score=61.24  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      +++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus        41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D   76 (679)
T PRK14851         41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD   76 (679)
T ss_pred             HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            457899999999999999999999999 99998854

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=94.62  E-value=0.12  Score=49.20  Aligned_cols=73  Identities=27%  Similarity=0.279  Sum_probs=52.1

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---ccccccccc------cc---CCCCccEE
Q 010101          365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG---EALHFEYLH------EF---FPEKGMIL  431 (518)
Q Consensus       365 l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~---~~~~~~~l~------~~---~~~~~div  431 (518)
                      +.|-++||-|.| |.|++.+..+.++|-+|.|++|+.++.++..+....   ..+++.|..      +.   .-.+-+++
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl   82 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL   82 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence            346789999765 899999999999999999999999998877655432   122332221      10   23456899


Q ss_pred             EEcCCC
Q 010101          432 ANASAI  437 (518)
Q Consensus       432 Inatp~  437 (518)
                      ||+...
T Consensus        83 iNNAGI   88 (245)
T COG3967          83 INNAGI   88 (245)
T ss_pred             eecccc
Confidence            998754

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=94.61  E-value=3  Score=44.97  Aligned_cols=207  Identities=14%  Similarity=0.129  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHhhCCCEEEEE----ecc----CCCCcHHHHHHHhcC-CCCcEEEEeecCCCCCCCCCCcHHHHHHHHH
Q 010101           20 TEEMQASIEQAKVEGADLVELC----IDS----MEFSHISEVDKLIQH-PTLPAIVSYRLKSSRKSSDEACKNTCLQVLR   90 (518)
Q Consensus        20 ~~~~~~~~~~~~~~g~D~vElR----lD~----l~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll~   90 (518)
                      .++.+.-++..-+.|.+.||.-    .|.    +..++.+.++.+++. .+.++..-+|..+-=|..+-+ ++...+.++
T Consensus        25 t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~p-ddvv~~~v~  103 (448)
T PRK12331         25 TEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYA-DDVVESFVQ  103 (448)
T ss_pred             HHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCc-hhhHHHHHH
Confidence            3344444444445799999995    553    225667778888765 467776667876666664444 667778899


Q ss_pred             HHhhcCCcEEEEecCCCC-chhhHHHh-hcCCCcEEE--EeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccC--C
Q 010101           91 RALDLDVEFVEMDYEVAS-DPLMSEII-YSRSNTKII--VSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVD--S  164 (518)
Q Consensus        91 ~~~~~g~~yvDiEl~~~~-~~~~~l~~-~~~~~~kiI--~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~--~  164 (518)
                      .+++.|++.|-|=....+ +-+....+ ++..+..+.  +||-+  ...-+.+.+.++.+++.+.|+|.+-|+=|+-  +
T Consensus       104 ~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~--~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~  181 (448)
T PRK12331        104 KSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT--SPVHTIDYFVKLAKEMQEMGADSICIKDMAGILT  181 (448)
T ss_pred             HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec--CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC
Confidence            999999999887765432 11222233 444454443  45443  2112567889999999999999999987775  5


Q ss_pred             cccHHHHHHHhcc-CCCCEEEE--ecCCccchhhhcCCCCCCcccccccCC-CCCCCCCCHHHHHHHhh
Q 010101          165 ITDLAPVFEMLTH-CQVPLIAL--AVGSRGLISQLLGPKFGGFLVYGSLGG-KSVPGLPTLVSLKQVYQ  229 (518)
Q Consensus       165 ~~D~~~l~~~~~~-~~~p~i~~--~mG~~G~~sRi~~~~~gs~~ty~~~~~-~sApGQ~~~~~l~~~~~  229 (518)
                      +.++.++.+.+++ .+.|+-.=  +.--+|..+-+.+-..|....-+++.+ +.-.||++.+++...++
T Consensus       182 P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~  250 (448)
T PRK12331        182 PYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQ  250 (448)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHH
Confidence            7888888877643 24443210  011122233333333454444444432 12367777777765553

>PRK12862 malic enzyme; Reviewed

Probab=94.60  E-value=0.25  Score=56.45  Aligned_cols=174  Identities=19%  Similarity=0.185  Sum_probs=97.9

Q ss_pred             CcHHHHHHHh--cCCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCeEEEeecC-HHHHHHHHHHHHHh
Q 010101          275 DDVKEFFRTY--SGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTD-CESAISAIEDALRE  351 (518)
Q Consensus       275 ~~l~~~~~~l--~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l~G~NTD-~~G~~~~l~~~l~~  351 (518)
                      +|-++|++..  ..+.|+|+|.-==-..+.+..++.+-      ...|.-++.  |. .+|+-.= ..|++++++-    
T Consensus       120 ~d~d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i~~~~~------~~~~ip~f~--DD-~~GTa~v~la~l~~a~~~----  186 (763)
T PRK12862        120 SDPDKLVEIVAALEPTFGGINLEDIKAPECFYIERELR------ERMKIPVFH--DD-QHGTAIIVAAALLNGLKL----  186 (763)
T ss_pred             CCHHHHHHHHHHhCCCcceeeeecccCchHHHHHHHHH------hcCCCceEe--cC-cccHHHHHHHHHHHHHHH----
Confidence            4666676655  35789998753211222333333222      122333444  22 4444322 2345555442    


Q ss_pred             hccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC---eEEEEeCC--------H--H-HHHHHHHHhcCccccc
Q 010101          352 RQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA---RVIIFNRN--------Y--E-RAKALADAVSGEALHF  417 (518)
Q Consensus       352 ~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~---~v~i~nRt--------~--~-ka~~la~~~~~~~~~~  417 (518)
                       .|        .+++..+++|.|||.+|-+++..|...|.   +|++++|.        .  . .-+.+|+..     ..
T Consensus       187 -~~--------~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-----~~  252 (763)
T PRK12862        187 -VG--------KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT-----DA  252 (763)
T ss_pred             -hC--------CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc-----cc
Confidence             12        46788999999999999999999999998   79999942        1  1 122345442     12


Q ss_pred             ccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhh---cCCCEEEEEee-CCCchHHHHHHHHC--CCeeeccH
Q 010101          418 EYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEAL---KAYELVFDAVY-TPRNTRLLREAAEV--GATVVSGV  486 (518)
Q Consensus       418 ~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l---~~~~~v~Di~Y-~P~~T~ll~~A~~~--G~~~i~G~  486 (518)
                      .+|.+ .++.+|++|-++..|.        +.++++   .+..++|=+.- .|+-||  ++|.+.  |+.+..|.
T Consensus       253 ~~l~e-~~~~~~v~iG~s~~g~--------~~~~~v~~M~~~piifalsNP~~E~~p--~~a~~~~~~~i~atGr  316 (763)
T PRK12862        253 RTLAE-VIEGADVFLGLSAAGV--------LKPEMVKKMAPRPLIFALANPTPEILP--EEARAVRPDAIIATGR  316 (763)
T ss_pred             CCHHH-HHcCCCEEEEcCCCCC--------CCHHHHHHhccCCEEEeCCCCcccCCH--HHHHHhcCCEEEEECC
Confidence            34444 4566899998775332        445544   35678887753 243354  344444  45555564

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.59  E-value=0.066  Score=53.87  Aligned_cols=122  Identities=11%  Similarity=-0.009  Sum_probs=67.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCC----CeEEEEeCCH-HHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRG----ARVIIFNRNY-ERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G----~~v~i~nRt~-~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      ++.|||+|-+|.+++..|.+.|    .+|++++|+. ++++.+...++.... ..+..+ ...++|+||-|+|.......
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~-~~~~~e-~~~~aDvVilavpp~~~~~v   80 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVEL-ADNEAE-IFTKCDHSFICVPPLAVLPL   80 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEE-eCCHHH-HHhhCCEEEEecCHHHHHHH
Confidence            6899999999999999999888    4799999864 556666555421111 122222 23568999999885422110


Q ss_pred             CCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHC-CC-eeeccHHHHHHHHHH
Q 010101          444 DQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEV-GA-TVVSGVEMFIRQALG  495 (518)
Q Consensus       444 ~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~-G~-~~i~G~~ml~~Qa~~  495 (518)
                      -. .+ ...+.++..++.+.-. -...-++..-.. .+ ++++-....+.++.-
T Consensus        81 l~-~l-~~~l~~~~~ivS~~aG-i~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t  131 (277)
T PRK06928         81 LK-DC-APVLTPDRHVVSIAAG-VSLDDLLEITPGLQVSRLIPSLTSAVGVGTS  131 (277)
T ss_pred             HH-HH-HhhcCCCCEEEEECCC-CCHHHHHHHcCCCCEEEEeCccHHHHhhhcE
Confidence            00 00 0123344555554322 222233333211 22 466766666666543

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=94.59  E-value=0.083  Score=51.90  Aligned_cols=46  Identities=37%  Similarity=0.629  Sum_probs=37.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.. .+++++++
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~   51 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAEL   51 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHH
Confidence            467899999988 68999999999999999999999853 34454444

>PRK06841 short chain dehydrogenase; Provisional

Probab=94.58  E-value=0.086  Score=51.55  Aligned_cols=40  Identities=35%  Similarity=0.577  Sum_probs=35.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERA  403 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka  403 (518)
                      ++++++++|.|+ ||.|++++..|.+.|++|.+++|+.+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~   52 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA   52 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            467899999997 7899999999999999999999997753

>PRK07791 short chain dehydrogenase; Provisional

Probab=94.56  E-value=0.078  Score=53.36  Aligned_cols=46  Identities=35%  Similarity=0.665  Sum_probs=39.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH---------HHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY---------ERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~---------~ka~~la~~~  410 (518)
                      +++|+++|.|+ +|.|++++..|++.|++|.+++|+.         ++++++++++
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l   59 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEI   59 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHH
Confidence            46899999988 5899999999999999999998876         6777776665

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=94.55  E-value=0.087  Score=51.52  Aligned_cols=70  Identities=24%  Similarity=0.350  Sum_probs=50.5

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCccEEEEc
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGMILANA  434 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~divIna  434 (518)
                      +++|+|+ ||.|++++..|.+.|++|.+++|+.++++++.+.++...    .++.+   +...      .....|++|++
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~   81 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6899987 789999999999999999999999999888877654321    11211   1110      12357999998


Q ss_pred             CCCC
Q 010101          435 SAIG  438 (518)
Q Consensus       435 tp~g  438 (518)
                      ....
T Consensus        82 ag~~   85 (248)
T PRK10538         82 AGLA   85 (248)
T ss_pred             CCcc
Confidence            7643

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=94.52  E-value=2.8  Score=46.72  Aligned_cols=208  Identities=13%  Similarity=0.101  Sum_probs=131.8

Q ss_pred             CHHHHHHHHHHHHhhCCCEEEEE----ecc----CCCCcHHHHHHHhc-CCCCcEEEEeecCCCCCCCCCCcHHHHHHHH
Q 010101           19 TTEEMQASIEQAKVEGADLVELC----IDS----MEFSHISEVDKLIQ-HPTLPAIVSYRLKSSRKSSDEACKNTCLQVL   89 (518)
Q Consensus        19 ~~~~~~~~~~~~~~~g~D~vElR----lD~----l~~~~~~~l~~l~~-~~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll   89 (518)
                      +.++.+.-++...+.|.+.+|.-    .|.    +..++.+.++.+++ ..+.++..-+|..+-=|..+-. ++...+.+
T Consensus        19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~yp-ddvv~~~v   97 (582)
T TIGR01108        19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYA-DDVVERFV   97 (582)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCc-hhhHHHHH
Confidence            34444444444455799999995    663    23567777888876 3568888888966666654444 56677788


Q ss_pred             HHHhhcCCcEEEEecCCCC--chhhHHHhhcCCCcEEEEeeecCCCCCC--ChhHHHHHHHHHHHcCCCEEEEEcccC--
Q 010101           90 RRALDLDVEFVEMDYEVAS--DPLMSEIIYSRSNTKIIVSSYLNGGGKP--TTEKLGDVIACMQATGADVMKLEIAVD--  163 (518)
Q Consensus        90 ~~~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--  163 (518)
                      +.+.+.|++.+-|=....+  .....+..++..+..+.++.-.  ..+|  +.+.+.++.+++.+.|||.+-|+=|+-  
T Consensus        98 ~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~--t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~  175 (582)
T TIGR01108        98 KKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISY--TTSPVHTLETYLDLAEELLEMGVDSICIKDMAGIL  175 (582)
T ss_pred             HHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEe--ccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCc
Confidence            9999999998777654432  1222222244455666654321  2255  667899999999999999998887764  


Q ss_pred             CcccHHHHHHHhcc-CCCCEEEE---ecCCccchhhhcCCCCCCcccccccCC-CCCCCCCCHHHHHHHhhh
Q 010101          164 SITDLAPVFEMLTH-CQVPLIAL---AVGSRGLISQLLGPKFGGFLVYGSLGG-KSVPGLPTLVSLKQVYQL  230 (518)
Q Consensus       164 ~~~D~~~l~~~~~~-~~~p~i~~---~mG~~G~~sRi~~~~~gs~~ty~~~~~-~sApGQ~~~~~l~~~~~~  230 (518)
                      ++.++.++.+.++. .+.|+ .+   +.--++..+-+.+-..|....-+++.+ +...||++++++...++.
T Consensus       176 ~P~~v~~lv~~lk~~~~~pi-~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~  246 (582)
T TIGR01108       176 TPKAAYELVSALKKRFGLPV-HLHSHATTGMAEMALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRG  246 (582)
T ss_pred             CHHHHHHHHHHHHHhCCCce-EEEecCCCCcHHHHHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHh
Confidence            57888888776543 24443 22   112223333444444465555555543 357999999998877653

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=94.50  E-value=0.19  Score=53.31  Aligned_cols=116  Identities=25%  Similarity=0.291  Sum_probs=68.5

Q ss_pred             EeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEcc-----------------chhHHHHHHHHHHCCCeEEE
Q 010101          333 GYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGA-----------------GGAGRALAFGAKSRGARVII  395 (518)
Q Consensus       333 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGa-----------------Gg~araia~~L~~~G~~v~i  395 (518)
                      |---|..-++..+++.+..           .+++|++++|.|+                 |.+|++++.+|...|++|++
T Consensus       165 gr~~~~~~I~~~~~~~~~~-----------~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~  233 (399)
T PRK05579        165 GRMAEPEEIVAAAERALSP-----------KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTL  233 (399)
T ss_pred             CCCCCHHHHHHHHHHHhhh-----------cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEE
Confidence            3455666666666554431           3478999999987                 56999999999999999999


Q ss_pred             EeCCHHHHHHHHHHhcCcccccc---cc----cccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCC--CEEEEEeeCC
Q 010101          396 FNRNYERAKALADAVSGEALHFE---YL----HEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAY--ELVFDAVYTP  466 (518)
Q Consensus       396 ~nRt~~ka~~la~~~~~~~~~~~---~l----~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~--~~v~Di~Y~P  466 (518)
                      ++|+.+ .+.   ..+...+++.   ++    .+ .....|++|++..++.+.  ... .....+++.  .+.+++.-+|
T Consensus       234 v~~~~~-~~~---~~~~~~~dv~~~~~~~~~v~~-~~~~~DilI~~Aav~d~~--~~~-~~~~Kikk~~~~~~l~L~~~p  305 (399)
T PRK05579        234 VSGPVN-LPT---PAGVKRIDVESAQEMLDAVLA-ALPQADIFIMAAAVADYR--PAT-VAEGKIKKGEGELTLELVPNP  305 (399)
T ss_pred             eCCCcc-ccC---CCCcEEEccCCHHHHHHHHHH-hcCCCCEEEEcccccccc--ccc-ccccCccCCCCCceEEEEeCc
Confidence            998752 110   0011111221   11    11 235689999987654321  111 112233332  3567777766


Q ss_pred             C
Q 010101          467 R  467 (518)
Q Consensus       467 ~  467 (518)
                      .
T Consensus       306 d  306 (399)
T PRK05579        306 D  306 (399)
T ss_pred             H
Confidence            4

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.47  E-value=0.1  Score=53.01  Aligned_cols=48  Identities=33%  Similarity=0.513  Sum_probs=39.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN-YERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt-~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|.+.+|. .++++++++++
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i   57 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEI   57 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHH
Confidence            5688999999998 579999999999999999998874 45666666655

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.45  E-value=0.092  Score=51.13  Aligned_cols=46  Identities=26%  Similarity=0.385  Sum_probs=37.6

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY-ERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~-~ka~~la~~~  410 (518)
                      +++++++|.|+ ||.|++++..|.+.|++|+++.|+. ++.+.+++.+
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l   51 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEI   51 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHH
Confidence            46789999997 8899999999999999999999975 3455555444

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.43  E-value=0.1  Score=53.68  Aligned_cols=71  Identities=11%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC--c------ccc-cccccccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSG--E------ALH-FEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~--~------~~~-~~~l~~~~~~~~divInat  435 (518)
                      +.+++.|+|+|.+|.++++.++..|. +|.+++++.++++..+-++..  .      .+. ..+.+  ...++|+||.+.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~--~l~~ADiVVita   81 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE--DIKDSDVVVITA   81 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH--HhCCCCEEEECC
Confidence            45789999999999999999998895 999999998776554432221  0      011 12222  357899999987


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      ..+
T Consensus        82 g~~   84 (319)
T PTZ00117         82 GVQ   84 (319)
T ss_pred             CCC
Confidence            554

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=94.43  E-value=0.03  Score=59.44  Aligned_cols=71  Identities=17%  Similarity=0.173  Sum_probs=51.6

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY-----ERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~-----~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      .++||+|+|||.|-.|++-+..|...|++|+|--|..     ++..+.|..-+...   .++.+ .+.++|+|++.+|..
T Consensus        33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v---~~~~E-a~~~ADvVviLlPDt  108 (487)
T PRK05225         33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV---GTYEE-LIPQADLVINLTPDK  108 (487)
T ss_pred             HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc---CCHHH-HHHhCCEEEEcCChH
Confidence            4679999999999999999999999999999877764     23333343333322   33333 457799999999854

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.41  E-value=0.12  Score=55.47  Aligned_cols=74  Identities=30%  Similarity=0.361  Sum_probs=51.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHHhcCccc--cccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN--YERAKALADAVSGEAL--HFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt--~~ka~~la~~~~~~~~--~~~~---l~~~------~~~~~d  429 (518)
                      .+++++++|.|+ ||.|++++..|.+.|++|.+++|.  .++.++++++++...+  ++.+   +...      .....|
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  286 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD  286 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence            356899999998 899999999999999999999884  4556666666653322  1111   1000      123579


Q ss_pred             EEEEcCCC
Q 010101          430 ILANASAI  437 (518)
Q Consensus       430 ivInatp~  437 (518)
                      +|||+...
T Consensus       287 ~vi~~AG~  294 (450)
T PRK08261        287 IVVHNAGI  294 (450)
T ss_pred             EEEECCCc
Confidence            99998754

>PRK06198 short chain dehydrogenase; Provisional

Probab=94.40  E-value=0.094  Score=51.45  Aligned_cols=46  Identities=35%  Similarity=0.560  Sum_probs=39.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGAR-VIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~-v~i~nRt~~ka~~la~~~  410 (518)
                      +++|+++|.|+ |+.|+.++..|.+.|++ |++++|+.++.+.+.+.+
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l   51 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAEL   51 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHH
Confidence            56899999998 68999999999999996 999999988777666554

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=94.40  E-value=0.11  Score=51.14  Aligned_cols=47  Identities=34%  Similarity=0.551  Sum_probs=37.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN-YERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt-~~ka~~la~~~  410 (518)
                      .+++|+++|+|+ ||.|++++..|.+.|++|.++.|+ .+..+.+.+.+
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l   52 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEI   52 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            467899999987 679999999999999988888884 45555555544

>PRK06114 short chain dehydrogenase; Provisional

Probab=94.38  E-value=0.11  Score=50.92  Aligned_cols=47  Identities=26%  Similarity=0.510  Sum_probs=38.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYE-RAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~-ka~~la~~~  410 (518)
                      ++++|+++|.|+ ||.|++++..|.+.|++|.+++|+.+ ..+++++.+
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l   53 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHI   53 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH
Confidence            467899999987 68999999999999999999999754 445555544

>PRK07832 short chain dehydrogenase; Provisional

Probab=94.36  E-value=0.097  Score=52.01  Aligned_cols=43  Identities=26%  Similarity=0.403  Sum_probs=37.5

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++|+|+ ||.|++++..|++.|++|.+++|+.++.+++.+++
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~   44 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADA   44 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            46899987 78999999999999999999999998887776654

>CHL00194 ycf39 Ycf39; Provisional

Probab=94.32  E-value=0.08  Score=54.07  Aligned_cols=66  Identities=24%  Similarity=0.298  Sum_probs=47.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--ccc---cccccCCCCccEEEEcCC
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFE---YLHEFFPEKGMILANASA  436 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~---~l~~~~~~~~divInatp  436 (518)
                      +++|+|+ |..|+.++.+|.+.|++|+++.|+.+++..+.. .+.+.+  ++.   .+.. ...++|.||++.+
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~-~~v~~v~~Dl~d~~~l~~-al~g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE-WGAELVYGDLSLPETLPP-SFKGVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh-cCCEEEECCCCCHHHHHH-HHCCCCEEEECCC
Confidence            6899997 789999999999999999999999877654432 232221  222   2222 3567899999864

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.31  E-value=0.099  Score=50.93  Aligned_cols=44  Identities=32%  Similarity=0.452  Sum_probs=38.8

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++||.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~   45 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVA   45 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            368999996 78999999999999999999999998888877655

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06181 short chain dehydrogenase; Provisional

Probab=94.31  E-value=0.11  Score=51.21  Aligned_cols=43  Identities=37%  Similarity=0.603  Sum_probs=38.1

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++|.|+ |+.|++++..|.+.|++|++++|+.++.+++.+.+
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l   45 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQEL   45 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            57999998 78999999999999999999999998887776655

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=94.30  E-value=0.09  Score=51.58  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=29.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY  400 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~  400 (518)
                      +|+|+|+||.|..++..|+..|+ +++|++.+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 999998753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=94.29  E-value=0.12  Score=53.71  Aligned_cols=72  Identities=18%  Similarity=0.084  Sum_probs=50.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----ccc--cccc---ccccCCCCccEEEEc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG----EAL--HFEY---LHEFFPEKGMILANA  434 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~----~~~--~~~~---l~~~~~~~~divIna  434 (518)
                      ..++++||.|+ |..|+.++..|.+.|++|+++.|+.++.+.+...+..    ..+  ++.+   +.+ ...+.|.||++
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~Vih~   86 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDE-AVKGCDGVFHV   86 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHH-HHcCCCEEEEC
Confidence            35789999996 7899999999999999999999998887766554421    111  1111   112 23457999998


Q ss_pred             CCC
Q 010101          435 SAI  437 (518)
Q Consensus       435 tp~  437 (518)
                      ...
T Consensus        87 A~~   89 (353)
T PLN02896         87 AAS   89 (353)
T ss_pred             Ccc
Confidence            754

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.27  E-value=0.11  Score=53.70  Aligned_cols=92  Identities=14%  Similarity=0.074  Sum_probs=56.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--------------cc-ccccccCCCCccEEE
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--------------HF-EYLHEFFPEKGMILA  432 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--------------~~-~~l~~~~~~~~divI  432 (518)
                      .++.|||+|.+|.+++..|.+.|++|++++|+.. .+.+.+ .+....              .. .+. + ....+|+||
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~D~vi   78 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-A-ALATADLVL   78 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHh-cCceeecCCCcceecccceeEeccCh-h-hccCCCEEE
Confidence            4699999999999999999999999999999753 344433 121110              00 111 2 345789999


Q ss_pred             EcCCCCCCCCCCCCCCC--hhhhcCCCEEEEEeeCCC
Q 010101          433 NASAIGMEPNSDQSPVP--KEALKAYELVFDAVYTPR  467 (518)
Q Consensus       433 natp~g~~~~~~~~~~~--~~~l~~~~~v~Di~Y~P~  467 (518)
                      -|++.....   . .+.  ...+.++.+++++.....
T Consensus        79 l~vk~~~~~---~-~~~~l~~~~~~~~iii~~~nG~~  111 (341)
T PRK08229         79 VTVKSAATA---D-AAAALAGHARPGAVVVSFQNGVR  111 (341)
T ss_pred             EEecCcchH---H-HHHHHHhhCCCCCEEEEeCCCCC
Confidence            988743211   0 011  012355667777754433

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.25  E-value=0.19  Score=50.82  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=32.8

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY  400 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~  400 (518)
                      +.+.+|+|+|+||.|-.++..|+..|+ +|+|++.+.
T Consensus        17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            456899999999999999999999999 999999764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=94.24  E-value=0.1  Score=53.37  Aligned_cols=70  Identities=23%  Similarity=0.214  Sum_probs=52.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-hcCccc---c-------cccccccCCCCccEEEEcCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA-VSGEAL---H-------FEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~-~~~~~~---~-------~~~l~~~~~~~~divInatp  436 (518)
                      .++.|+|+|.-|.|++..|++.|.+|.++.|+++-.+++-.. -+..+.   .       ..|+.+ ...++|+|+-++|
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~-a~~~ad~iv~avP   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAE-ALDGADIIVIAVP   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHH-HHhcCCEEEEECC
Confidence            478999999999999999999999999999999998887654 122221   1       123333 4556888888887


Q ss_pred             CC
Q 010101          437 IG  438 (518)
Q Consensus       437 ~g  438 (518)
                      ..
T Consensus        81 s~   82 (329)
T COG0240          81 SQ   82 (329)
T ss_pred             hH
Confidence            53

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=94.21  E-value=0.27  Score=48.49  Aligned_cols=110  Identities=19%  Similarity=0.302  Sum_probs=67.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHH-----HHHHhcCccc-ccccccccCCCCccEEEEcC
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKA-----LADAVSGEAL-HFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~-----la~~~~~~~~-~~~~l~~~~~~~~divInat  435 (518)
                      .++++.+|.|+|+ |-.|.+++.-|+..++.+.++-|+.++-..     +-+.++...+ +.+ .+  ...+.+++..|+
T Consensus       163 idlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d-~~--~~~e~i~v~vAs  239 (351)
T COG5322         163 IDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLD-YA--LPQEDILVWVAS  239 (351)
T ss_pred             cCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeecc-cc--ccccceEEEEee
Confidence            6788899999999 679999999999888877788877654332     2233332221 111 11  223334444444


Q ss_pred             -CCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCC-Ceeecc
Q 010101          436 -AIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVG-ATVVSG  485 (518)
Q Consensus       436 -p~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G-~~~i~G  485 (518)
                       |.|       ..+.+..++++.+++|--|- +.-  -...|..| ..+++|
T Consensus       240 ~~~g-------~~I~pq~lkpg~~ivD~g~P-~dv--d~~vk~~~~V~Ii~G  281 (351)
T COG5322         240 MPKG-------VEIFPQHLKPGCLIVDGGYP-KDV--DTSVKNVGGVRIIPG  281 (351)
T ss_pred             cCCC-------ceechhhccCCeEEEcCCcC-ccc--ccccccCCCeEEecC
Confidence             322       13667789999999999883 321  12224444 677765

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=94.18  E-value=0.1  Score=53.30  Aligned_cols=41  Identities=24%  Similarity=0.203  Sum_probs=34.9

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      +|++++|.|+ |..|+.++..|.+.|++|+++.|+.++++.+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKT   45 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHH
Confidence            4789999996 7899999999999999999888887655443

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=94.16  E-value=0.11  Score=53.02  Aligned_cols=71  Identities=20%  Similarity=0.204  Sum_probs=51.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc-c------ccc--ccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE-A------LHF--EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~-~------~~~--~~l~~~~~~~~divInatp~  437 (518)
                      ++.|||+|.+|.++|+.|...|.  ++.+++++.++++..+.++... .      ..+  .+.+  ...++|+||-|...
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~--~~~~aDivvitaG~   78 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYD--DCADADIIVITAGP   78 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHH--HhCCCCEEEECCCC
Confidence            47899999999999999998886  7999999988887777666421 1      111  1211  35679999987765


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      .-.|
T Consensus        79 ~~kp   82 (307)
T cd05290          79 SIDP   82 (307)
T ss_pred             CCCC
Confidence            4334

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.15  E-value=0.11  Score=48.03  Aligned_cols=97  Identities=23%  Similarity=0.272  Sum_probs=61.2

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccc------------------------c
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE------------------------Y  419 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~------------------------~  419 (518)
                      .+...+++|+|+|-+|+.++..+..+|+++++.+..+++.+++-.... ..+.++                        .
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGA-YFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTT-EESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccC-ceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            355689999999999999999999999999999999988877654332 111110                        1


Q ss_pred             ccccCCCCccEEEEcCC-CCCCCCCCCCCCChh---hhcCCCEEEEEeeC
Q 010101          420 LHEFFPEKGMILANASA-IGMEPNSDQSPVPKE---ALKAYELVFDAVYT  465 (518)
Q Consensus       420 l~~~~~~~~divInatp-~g~~~~~~~~~~~~~---~l~~~~~v~Di~Y~  465 (518)
                      +.+ .+..+|+||++.- .+-.   .+..+..+   .+++..++.|++-.
T Consensus        96 f~~-~i~~~d~vI~~~~~~~~~---~P~lvt~~~~~~m~~gsvIvDis~D  141 (168)
T PF01262_consen   96 FAE-FIAPADIVIGNGLYWGKR---APRLVTEEMVKSMKPGSVIVDISCD  141 (168)
T ss_dssp             HHH-HHHH-SEEEEHHHBTTSS------SBEHHHHHTSSTTEEEEETTGG
T ss_pred             HHH-HHhhCcEEeeecccCCCC---CCEEEEhHHhhccCCCceEEEEEec
Confidence            111 2456799986553 2211   11234443   35778899998754

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06398 aldose dehydrogenase; Validated

Probab=94.15  E-value=0.069  Score=52.71  Aligned_cols=39  Identities=26%  Similarity=0.434  Sum_probs=34.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      ++++|+++|.|+ ||.|++++..|.+.|++|++++|+.++
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~   42 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS   42 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence            367899999997 689999999999999999999998654

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=94.14  E-value=0.094  Score=52.29  Aligned_cols=71  Identities=21%  Similarity=0.412  Sum_probs=51.0

Q ss_pred             EEEEcc-chhHHHHHHHHHHCC----CeEEEEeCCHHHHHHHHHHhcCc-----cccc---ccccccCCCCccEEEEcCC
Q 010101          370 FVLVGA-GGAGRALAFGAKSRG----ARVIIFNRNYERAKALADAVSGE-----ALHF---EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       370 vlvlGa-Gg~araia~~L~~~G----~~v~i~nRt~~ka~~la~~~~~~-----~~~~---~~l~~~~~~~~divInatp  436 (518)
                      +.|+|+ |.+|..+++.|+..|    .+|++++++.++++..+.++..-     ...+   .++.+ ...++|+||.+..
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~-~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYE-AFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHH-HhCCCCEEEECCC
Confidence            469999 779999999999888    48999999998887776665321     0111   12223 4678999999886


Q ss_pred             CCCCC
Q 010101          437 IGMEP  441 (518)
Q Consensus       437 ~g~~~  441 (518)
                      .+-.|
T Consensus        80 ~~~~~   84 (263)
T cd00650          80 VGRKP   84 (263)
T ss_pred             CCCCc
Confidence            65444

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.12  E-value=0.1  Score=53.41  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=32.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      ..+++|+|+|.+|..++..|++.|++|+++.|+..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~   39 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY   39 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            35899999999999999999999999999999864

>PRK05599 hypothetical protein; Provisional

Probab=94.11  E-value=0.11  Score=50.86  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=36.9

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++|.|+ +|.|++++..|. .|.+|.+++|+.++++++++++
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l   43 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDL   43 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence            36889988 589999999998 4899999999999999888766

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=94.11  E-value=0.082  Score=52.89  Aligned_cols=106  Identities=16%  Similarity=0.113  Sum_probs=58.5

Q ss_pred             EEEEEccchhHHHHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSR-GARV-IIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQS  446 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~-G~~v-~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~  446 (518)
                      ++.|+|+|.+|+.++.++.+. +.++ .++.|. ...+...+.++.....+.++++. ..+.|+||.|||.....     
T Consensus         3 rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~-~~~~~~~~~~~~~~~~~~d~~~l-~~~~DvVve~t~~~~~~-----   75 (265)
T PRK13303          3 KVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPE-HSIDAVRRALGEAVRVVSSVDAL-PQRPDLVVECAGHAALK-----   75 (265)
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCceEEEEEEcC-CCHHHHhhhhccCCeeeCCHHHh-ccCCCEEEECCCHHHHH-----
Confidence            799999999999999999876 4443 344443 22222333332211122233321 24689999999864221     


Q ss_pred             CCChhhhcCCCEEEEEee---C-CC-chHHHHHHHHCCCe
Q 010101          447 PVPKEALKAYELVFDAVY---T-PR-NTRLLREAAEVGAT  481 (518)
Q Consensus       447 ~~~~~~l~~~~~v~Di~Y---~-P~-~T~ll~~A~~~G~~  481 (518)
                      ..-...|..+.-|+-..-   . +. ...+.+.|++.|.+
T Consensus        76 e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         76 EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            122344555443443221   1 11 24566778888876

>PRK12747 short chain dehydrogenase; Provisional

Probab=94.08  E-value=0.13  Score=50.37  Aligned_cols=45  Identities=33%  Similarity=0.433  Sum_probs=36.8

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFN-RNYERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~n-Rt~~ka~~la~~~  410 (518)
                      ++|+++|.|+ ||.|++++..|++.|++|.+.. |+.++.++++.++
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~   49 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI   49 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH
Confidence            4789999987 6899999999999999988864 6677776666554

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.06  E-value=0.12  Score=50.31  Aligned_cols=45  Identities=24%  Similarity=0.548  Sum_probs=37.7

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVII-FNRNYERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i-~nRt~~ka~~la~~~  410 (518)
                      .+++++|.|+ ||.|++++..|.+.|++|.+ ..|+.++.+++++.+
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~   49 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEI   49 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4689999988 67999999999999997665 688888887776655

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.04  E-value=0.22  Score=51.20  Aligned_cols=69  Identities=25%  Similarity=0.163  Sum_probs=50.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-ccccccccCCCCccEEEEcCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-HFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-~~~~l~~~~~~~~divInatp~g  438 (518)
                      .|.+++|.|+|++|.+++..++..|++|+.+.++.+|. ++++++|...+ ...+.   .....|+++.+++.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~-~~a~~~Ga~~vi~~~~~---~~~~~d~~i~~~~~~  234 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAAR-RLALALGAASAGGAYDT---PPEPLDAAILFAPAG  234 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHhCCceecccccc---CcccceEEEECCCcH
Confidence            47899999999999988887778899998999998884 67888886542 21111   113468778777543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK08264 short chain dehydrogenase; Validated

Probab=93.99  E-value=0.096  Score=50.64  Aligned_cols=41  Identities=37%  Similarity=0.533  Sum_probs=36.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGA-RVIIFNRNYERAKA  405 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~-~v~i~nRt~~ka~~  405 (518)
                      +.+++++|+|+ |+.|++++..|.+.|+ +|+++.|+.+++++
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~   46 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD   46 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh
Confidence            45789999986 8899999999999999 99999999887654

>PRK07856 short chain dehydrogenase; Provisional

Probab=93.99  E-value=0.095  Score=51.34  Aligned_cols=39  Identities=23%  Similarity=0.484  Sum_probs=35.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|+++.|+.++
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~   42 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE   42 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            367899999987 689999999999999999999998765

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.95  E-value=0.17  Score=51.63  Aligned_cols=72  Identities=15%  Similarity=0.169  Sum_probs=50.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCc--------cccc-ccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGE--------ALHF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~--------~~~~-~~l~~~~~~~~divInatp~  437 (518)
                      +++.|+|+|-+|..+++.++..|. +|.+++++.++++..+.++...        .+.. .+.+  ...++|+||.+...
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~--~~~~aDiVii~~~~   80 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE--DIAGSDVVVITAGV   80 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH--HHCCCCEEEECCCC
Confidence            589999999999999999998876 9999999988776654433210        0111 1222  35679999988765


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      +..+
T Consensus        81 p~~~   84 (307)
T PRK06223         81 PRKP   84 (307)
T ss_pred             CCCc
Confidence            4443

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=93.92  E-value=1.8  Score=41.81  Aligned_cols=86  Identities=16%  Similarity=0.178  Sum_probs=61.1

Q ss_pred             eEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEecc---------CC----CCc---HHHHHHHhcCCCCcEEEEeecCCC
Q 010101           10 LVCTQLECETTEEMQASIEQAKVEGADLVELCIDS---------ME----FSH---ISEVDKLIQHPTLPAIVSYRLKSS   73 (518)
Q Consensus        10 ~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~---------l~----~~~---~~~l~~l~~~~~~PiI~T~R~~~e   73 (518)
                      .+.+.|.+.+.+++.+.++.+.+.|+|.|||-+-+         +.    .++   .+.++.+++..+.|+.+-+|..++
T Consensus        56 p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~  135 (231)
T cd02801          56 PLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD  135 (231)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC
Confidence            35578999999999998888877899999997654         21    122   245666766667888887774211


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCcEEEE
Q 010101           74 RKSSDEACKNTCLQVLRRALDLDVEFVEM  102 (518)
Q Consensus        74 GG~~~~~~~~~~~~ll~~~~~~g~~yvDi  102 (518)
                            . +++-.++++.+.+.|+++|.|
T Consensus       136 ------~-~~~~~~~~~~l~~~Gvd~i~v  157 (231)
T cd02801         136 ------D-EEETLELAKALEDAGASALTV  157 (231)
T ss_pred             ------C-chHHHHHHHHHHHhCCCEEEE
Confidence                  1 235667777788889999876

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR02415 23BDH acetoin reductases

Probab=93.91  E-value=0.14  Score=49.98  Aligned_cols=43  Identities=28%  Similarity=0.387  Sum_probs=37.9

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      |+++|+|+ |+.|++++..|.+.|++|++++|+.++++++.+.+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l   44 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEI   44 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            47899986 78999999999999999999999988887776655

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK12746 short chain dehydrogenase; Provisional

Probab=93.86  E-value=0.15  Score=49.78  Aligned_cols=46  Identities=35%  Similarity=0.573  Sum_probs=38.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVII-FNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i-~nRt~~ka~~la~~~  410 (518)
                      +++++++|.|+ ||.|++++..|.+.|++|.+ ..|+.++.+++.+.+
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~   51 (254)
T PRK12746          4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREI   51 (254)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            45789999997 78999999999999998766 589988877776655

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.86  E-value=0.11  Score=54.26  Aligned_cols=71  Identities=17%  Similarity=0.156  Sum_probs=48.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCC-------CeEEEEeCCHH-HHHHHHHHhcC-----ccc---cc-------cccccc
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRG-------ARVIIFNRNYE-RAKALADAVSG-----EAL---HF-------EYLHEF  423 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G-------~~v~i~nRt~~-ka~~la~~~~~-----~~~---~~-------~~l~~~  423 (518)
                      ..++.|||+|..|.|++..|.+.|       .+|.++.|+.+ ..+.+++.++.     .+.   .+       .++.+ 
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e-   89 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE-   89 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH-
Confidence            458999999999999999999887       58999999976 22233333331     111   11       12322 


Q ss_pred             CCCCccEEEEcCCCC
Q 010101          424 FPEKGMILANASAIG  438 (518)
Q Consensus       424 ~~~~~divInatp~g  438 (518)
                      ...++|+||-++|..
T Consensus        90 av~~aDiIvlAVPsq  104 (365)
T PTZ00345         90 AVEDADLLIFVIPHQ  104 (365)
T ss_pred             HHhcCCEEEEEcChH
Confidence            356789999998864

>PRK10637 cysG siroheme synthase; Provisional

Probab=93.85  E-value=0.12  Score=55.78  Aligned_cols=71  Identities=20%  Similarity=0.200  Sum_probs=47.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCccc--ccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE-RAKALADAVSGEAL--HFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~-ka~~la~~~~~~~~--~~~~l~~~~~~~~divInatp  436 (518)
                      .+++|++|||+|+|.+|.-=+..|.+.|++|+|++.... ..+++++.-...+.  .+.  .+ .+.++++||-||.
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~--~~-dl~~~~lv~~at~   81 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFD--ES-LLDTCWLAIAATD   81 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCC--hH-HhCCCEEEEECCC
Confidence            568899999999999998888999999999999987643 34445433211111  111  11 2345677777774

>PRK06523 short chain dehydrogenase; Provisional

Probab=93.84  E-value=0.11  Score=51.06  Aligned_cols=39  Identities=31%  Similarity=0.390  Sum_probs=35.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      .+++++++|.|+ ||.|++++..|++.|++|+++.|+.++
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~   45 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD   45 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh
Confidence            477899999997 789999999999999999999998654

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=93.82  E-value=2.3  Score=41.49  Aligned_cols=139  Identities=17%  Similarity=0.200  Sum_probs=85.4

Q ss_pred             EEeecC--CCHHHHHHHHHHHHhhCCCEE--EEEeccCCC-CcHHHHHHHh---cCCCCcEEEEeecCCCCCCCC--CCc
Q 010101           12 CTQLEC--ETTEEMQASIEQAKVEGADLV--ELCIDSMEF-SHISEVDKLI---QHPTLPAIVSYRLKSSRKSSD--EAC   81 (518)
Q Consensus        12 cv~l~~--~~~~~~~~~~~~~~~~g~D~v--ElRlD~l~~-~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~   81 (518)
                      |+++.+  .+......+++.++..|+|.+  .+|.-.+.. ...+.+..++   +..++|+|+..+.  +|-...  .+ 
T Consensus        65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~--~g~~~~~~~~-  141 (235)
T cd00958          65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP--RGPAVKNEKD-  141 (235)
T ss_pred             CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec--cCCcccCccC-
Confidence            445553  566667777889999999988  777654431 1112334443   3568999997654  233322  22 


Q ss_pred             HHHHHHHHHHHhhcCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEE
Q 010101           82 KNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKL  158 (518)
Q Consensus        82 ~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKi  158 (518)
                      .++-....+.+.+.|+|||=+......+.++++.+.  -...+++|=.   -+..+.++..+.++++.+.|++-+=+
T Consensus       142 ~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG---~~~~~~~~~l~~~~~~~~~Ga~gv~v  213 (235)
T cd00958         142 PDLIAYAARIGAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGG---PKKDSEEEFLKMVYDAMEAGAAGVAV  213 (235)
T ss_pred             HHHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCC---CCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence            333334466788999999998644333555666542  3345666622   12346677888899999999985533

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK06924 short chain dehydrogenase; Provisional

Probab=93.81  E-value=0.11  Score=50.67  Aligned_cols=43  Identities=26%  Similarity=0.431  Sum_probs=35.8

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHh
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY-ERAKALADAV  410 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~-~ka~~la~~~  410 (518)
                      |+++|+|+ ||.|++++..|.+.|++|.+++|+. ++.+++.+..
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~   46 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQY   46 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhcc
Confidence            57999986 7899999999999999999999987 5555555543

>PLN02602 lactate dehydrogenase

Probab=93.81  E-value=0.2  Score=52.24  Aligned_cols=69  Identities=12%  Similarity=0.103  Sum_probs=51.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc-----cccc---cccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA-----LHFE---YLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~-----~~~~---~l~~~~~~~~divInatp~  437 (518)
                      +++.|||+|.+|.++++.|...|.  ++.+++++.++++..+.++....     ..+.   +.+  ...++|+||-|...
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~--~~~daDiVVitAG~  115 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA--VTAGSDLCIVTAGA  115 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH--HhCCCCEEEECCCC
Confidence            699999999999999999998886  79999999988887776664211     1111   111  25679999987654


Q ss_pred             C
Q 010101          438 G  438 (518)
Q Consensus       438 g  438 (518)
                      .
T Consensus       116 ~  116 (350)
T PLN02602        116 R  116 (350)
T ss_pred             C
Confidence            3

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=93.80  E-value=0.15  Score=53.16  Aligned_cols=70  Identities=14%  Similarity=0.208  Sum_probs=51.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccc---cccccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFE---YLHEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~---~l~~~~~~~~divInatp  436 (518)
                      .|++++|.|+|+.|.+++..++.+|++|+++.++.++..++++++|... +...   .+.. ....+|++|+++.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~-~~~~~D~vid~~g  256 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKA-AIGTMDYIIDTVS  256 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHh-hcCCCCEEEECCC
Confidence            4789999999999999999888999988888887777677777787632 1111   1111 1224799999875

>PRK07201 short chain dehydrogenase; Provisional

Probab=93.79  E-value=0.13  Score=57.84  Aligned_cols=47  Identities=36%  Similarity=0.616  Sum_probs=42.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~  415 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEI  415 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            567899999997 78999999999999999999999999988887665

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.79  E-value=0.14  Score=49.82  Aligned_cols=47  Identities=32%  Similarity=0.507  Sum_probs=38.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIF-NRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~-nRt~~ka~~la~~~~  411 (518)
                      +++|+++|.|+ ||.|++++..|.+.|++|.+. .|+.++++.+.+.++
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~   51 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELG   51 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhC
Confidence            45789999986 789999999999999987765 567777777777664

>PRK05650 short chain dehydrogenase; Provisional

Probab=93.78  E-value=0.14  Score=50.67  Aligned_cols=43  Identities=26%  Similarity=0.367  Sum_probs=37.8

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++|.|+ ||.|++++..|.+.|++|+++.|+.++++++.+.+
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l   44 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLL   44 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            36899987 78999999999999999999999999888776654

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=93.77  E-value=1.9  Score=41.57  Aligned_cols=137  Identities=14%  Similarity=0.142  Sum_probs=76.8

Q ss_pred             CcccccCCceEEEeecCC---CHHHHHHHHHHHHhhCCCEEEEEeccCCCCcHHHHHHHhcCCCCcEEEEeecCCCCCCC
Q 010101            1 MEVAAKNSLLVCTQLECE---TTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSS   77 (518)
Q Consensus         1 ~~~~~~~~~~icv~l~~~---~~~~~~~~~~~~~~~g~D~vElRlD~l~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~   77 (518)
                      |+|+.+..-.-|=.....   +..+.....+.+...|+.++|+  +.+     +.+..+++..++|++.-+|..-++...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~--~~~-----~~~~~i~~~~~iPil~~~~~~~~~~~~   76 (219)
T cd04729           4 LEQLKGGLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA--NGV-----EDIRAIRARVDLPIIGLIKRDYPDSEV   76 (219)
T ss_pred             HHHhcCCeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc--CCH-----HHHHHHHHhCCCCEEEEEecCCCCCCc
Confidence            455555543333333222   2334455556667788998874  322     356777766799998777754332221


Q ss_pred             CCCcHHHHHHHHHHHhhcCCcEEEEecCC---CC-chhhHHHh-hcCCC-cEEEEeeecCCCCCCChhHHHHHHHHHHHc
Q 010101           78 DEACKNTCLQVLRRALDLDVEFVEMDYEV---AS-DPLMSEII-YSRSN-TKIIVSSYLNGGGKPTTEKLGDVIACMQAT  151 (518)
Q Consensus        78 ~~~~~~~~~~ll~~~~~~g~~yvDiEl~~---~~-~~~~~l~~-~~~~~-~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~  151 (518)
                      -.+   ...+.++.+.+.|+++|=+....   +. +...++.+ .++.+ ..++++.|+       .++.    .++.+.
T Consensus        77 ~ig---~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t-------~~ea----~~a~~~  142 (219)
T cd04729          77 YIT---PTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADIST-------LEEA----LNAAKL  142 (219)
T ss_pred             eeC---CCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCC-------HHHH----HHHHHc
Confidence            112   13446688889999998776433   22 13334442 33333 666665442       2333    556678


Q ss_pred             CCCEEEE
Q 010101          152 GADVMKL  158 (518)
Q Consensus       152 gadivKi  158 (518)
                      |+|++++
T Consensus       143 G~d~i~~  149 (219)
T cd04729         143 GFDIIGT  149 (219)
T ss_pred             CCCEEEc
Confidence            9999875

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PLN02214 cinnamoyl-CoA reductase

Probab=93.76  E-value=0.16  Score=52.56  Aligned_cols=38  Identities=29%  Similarity=0.173  Sum_probs=34.2

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      +++++++|.|+ |..|+.++..|.+.|++|+.+.|+.++
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~   46 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD   46 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence            56789999998 889999999999999999999998765

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.76  E-value=0.27  Score=49.77  Aligned_cols=68  Identities=18%  Similarity=0.160  Sum_probs=50.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-ccccccccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-HFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-~~~~l~~~~~~~~divInatp  436 (518)
                      .+.+++|.|+|++|.+++..+..+|++|+++.++.++.+.+. .++.... .+.+..  ....+|++++++.
T Consensus       155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~--~~~~~d~vid~~g  223 (319)
T cd08242         155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR-RLGVETVLPDEAES--EGGGFDVVVEATG  223 (319)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEeCccccc--cCCCCCEEEECCC
Confidence            468999999999999999999999999999999888866554 4775432 222211  2245899999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=93.75  E-value=0.14  Score=51.25  Aligned_cols=69  Identities=29%  Similarity=0.252  Sum_probs=52.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      .-+.||.++|.|.|..|+..+.+|...|++|+|.--++-.|-+.|=+ |.+...+++    ...+.||+|-||.
T Consensus       210 vM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMe-G~~V~tm~e----a~~e~difVTtTG  278 (434)
T KOG1370|consen  210 VMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAME-GYEVTTLEE----AIREVDIFVTTTG  278 (434)
T ss_pred             heecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhh-ccEeeeHHH----hhhcCCEEEEccC
Confidence            55789999999999999999999999999999999998887654422 233334433    3456788887774

>PRK08226 short chain dehydrogenase; Provisional

Probab=93.71  E-value=0.15  Score=50.12  Aligned_cols=37  Identities=30%  Similarity=0.485  Sum_probs=33.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      +++++++|.|+ ||.|++++..|.+.|++|++++|+.+
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~   41 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE   41 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH
Confidence            46789999986 78999999999999999999999975

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=93.71  E-value=4.8  Score=39.66  Aligned_cols=198  Identities=17%  Similarity=0.122  Sum_probs=118.3

Q ss_pred             CHHHHHHHHHHHHhhCCCEEEEEeccC----C--CCcHHHHHHHhcCC-CCcEEEEeecCCCCCCCCCCcHHHHHHHHHH
Q 010101           19 TTEEMQASIEQAKVEGADLVELCIDSM----E--FSHISEVDKLIQHP-TLPAIVSYRLKSSRKSSDEACKNTCLQVLRR   91 (518)
Q Consensus        19 ~~~~~~~~~~~~~~~g~D~vElRlD~l----~--~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~~ll~~   91 (518)
                      +.++.+.-++...+.|+|.||+=.=--    +  .++.+.+..+++.. +.++.+-.|..              .+.++.
T Consensus        17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~--------------~~~i~~   82 (265)
T cd03174          17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR--------------EKGIER   82 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc--------------hhhHHH
Confidence            555555656665668999999743110    1  23344566776544 56665555541              235667


Q ss_pred             HhhcCCcEEEEecCCCC----------------chhhHHHhhcCCCcEEEEeeecCCCCC-CChhHHHHHHHHHHHcCCC
Q 010101           92 ALDLDVEFVEMDYEVAS----------------DPLMSEIIYSRSNTKIIVSSYLNGGGK-PTTEKLGDVIACMQATGAD  154 (518)
Q Consensus        92 ~~~~g~~yvDiEl~~~~----------------~~~~~l~~~~~~~~kiI~S~H~f~~~t-p~~~~l~~~~~~~~~~gad  154 (518)
                      +.+.|++.|-+=+...+                ...+.+..++..+..+.++.-+. ... -+.+++.+.++++.++|+|
T Consensus        83 a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~-~~~~~~~~~l~~~~~~~~~~g~~  161 (265)
T cd03174          83 ALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA-FGCKTDPEYVLEVAKALEEAGAD  161 (265)
T ss_pred             HHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee-cCCCCCHHHHHHHHHHHHHcCCC
Confidence            77888888887776541                11222222556788888888433 231 2667899999999999999


Q ss_pred             EEEEEcccC--CcccHHHHHHHhccC-C-CCEEEEecCC--ccchhhhcCCCCCCcccccccCC-CCCCCCCCHHHHHHH
Q 010101          155 VMKLEIAVD--SITDLAPVFEMLTHC-Q-VPLIALAVGS--RGLISQLLGPKFGGFLVYGSLGG-KSVPGLPTLVSLKQV  227 (518)
Q Consensus       155 ivKia~~~~--~~~D~~~l~~~~~~~-~-~p~i~~~mG~--~G~~sRi~~~~~gs~~ty~~~~~-~sApGQ~~~~~l~~~  227 (518)
                      .+-++-+.-  +++++.++++...+. + .|+-.=+=-.  +|...-+.+-..|....-+++.+ +...|+.+.+++...
T Consensus       162 ~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~  241 (265)
T cd03174         162 EISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAA  241 (265)
T ss_pred             EEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHH
Confidence            998875543  678888888775543 2 3322111011  12222222223454444455543 367999999998876


Q ss_pred             hhhc
Q 010101          228 YQLE  231 (518)
Q Consensus       228 ~~~~  231 (518)
                      ++..
T Consensus       242 l~~~  245 (265)
T cd03174         242 LEGL  245 (265)
T ss_pred             HHhc
Confidence            6544

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PRK05855 short chain dehydrogenase; Validated

Probab=93.68  E-value=0.15  Score=56.16  Aligned_cols=47  Identities=32%  Similarity=0.532  Sum_probs=42.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ...+++++|+|+ ||.|++++..|++.|++|.+++|+.++++++++.+
T Consensus       312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~  359 (582)
T PRK05855        312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELI  359 (582)
T ss_pred             cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            456789999987 89999999999999999999999999988887765

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.66  E-value=0.21  Score=47.82  Aligned_cols=73  Identities=23%  Similarity=0.180  Sum_probs=54.8

Q ss_pred             CCcEEEEEcc--chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccc------------cccccCCCCccEE
Q 010101          366 AGKIFVLVGA--GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE------------YLHEFFPEKGMIL  431 (518)
Q Consensus       366 ~~k~vlvlGa--Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~------------~l~~~~~~~~div  431 (518)
                      ..|.|+|.|.  ||.|-|++..+.+.|+.|+-+.|..++-.+|+.+++-....++            ++..+.-.+-|++
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            3578999987  8999999999999999999999999999999988874321111            1111123456899


Q ss_pred             EEcCCCC
Q 010101          432 ANASAIG  438 (518)
Q Consensus       432 Inatp~g  438 (518)
                      +|.....
T Consensus        86 ~NNAG~~   92 (289)
T KOG1209|consen   86 YNNAGQS   92 (289)
T ss_pred             EcCCCCC
Confidence            9876544

>PRK08278 short chain dehydrogenase; Provisional

Probab=93.64  E-value=0.14  Score=50.94  Aligned_cols=37  Identities=35%  Similarity=0.611  Sum_probs=33.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      +++|+++|.|+ ||.|++++..|.+.|++|.++.|+.+
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAE   41 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence            56789999997 78999999999999999999999865

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=93.64  E-value=0.096  Score=53.60  Aligned_cols=112  Identities=21%  Similarity=0.252  Sum_probs=78.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHH----CCCeEEEEeCCHHHHHHHHHHhcCcc--------ccccc------ccccCCCCcc
Q 010101          369 IFVLVGA-GGAGRALAFGAKS----RGARVIIFNRNYERAKALADAVSGEA--------LHFEY------LHEFFPEKGM  429 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~----~G~~v~i~nRt~~ka~~la~~~~~~~--------~~~~~------l~~~~~~~~d  429 (518)
                      .++|.|| |-+|.=++..+.+    .|.++-|.+|+.+|.++..+..+...        +-+.|      +.+ ....+-
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~e-mak~~~   85 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDE-MAKQAR   85 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHH-HHhhhE
Confidence            5899999 5599999988887    56799999999999999988776322        11111      222 245688


Q ss_pred             EEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc-----hHHHHHHHHCCCeeec
Q 010101          430 ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN-----TRLLREAAEVGATVVS  484 (518)
Q Consensus       430 ivInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~-----T~ll~~A~~~G~~~i~  484 (518)
                      +||||..+=   .....++-..++..+.--+|+.-.|.-     -..-+.|+++|.-+++
T Consensus        86 vivN~vGPy---R~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVs  142 (423)
T KOG2733|consen   86 VIVNCVGPY---RFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVS  142 (423)
T ss_pred             EEEeccccc---eecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEe
Confidence            999998531   112345556778888889999988863     3344578888765553

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.63  E-value=0.26  Score=51.36  Aligned_cols=69  Identities=30%  Similarity=0.278  Sum_probs=49.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHH-hcCccccc--c-c----ccc-cCCCCccEEEEcCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADA-VSGEALHF--E-Y----LHE-FFPEKGMILANASA  436 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~-~~~~~~~~--~-~----l~~-~~~~~~divInatp  436 (518)
                      +.+|+|+|+|.+|..++..+...|+ +|.+++++++|.+ +|++ ++......  + +    ... ..-..+|++|.||.
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~-~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLE-LAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH-HHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            3489999999999999888889998 9999999999974 5555 55432211  1 0    001 01135899999997

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.61  E-value=0.14  Score=53.18  Aligned_cols=69  Identities=17%  Similarity=0.196  Sum_probs=49.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCcc----c------cc-ccccccCCCCccEEEEcC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV-SGEA----L------HF-EYLHEFFPEKGMILANAS  435 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~-~~~~----~------~~-~~l~~~~~~~~divInat  435 (518)
                      .++.|+|+|.+|.+++..|++.| +++++.|+++..+++.+.- +...    .      .. .++.+ ....+|+||-++
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~-a~~~aDlVilav   85 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE-AANCADVVVMGV   85 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH-HHhcCCEEEEEe
Confidence            57999999999999999999988 7888899999988876531 1110    0      01 12222 345689999998


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      |..
T Consensus        86 ps~   88 (341)
T PRK12439         86 PSH   88 (341)
T ss_pred             CHH
Confidence            853

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=93.59  E-value=0.17  Score=57.50  Aligned_cols=48  Identities=31%  Similarity=0.513  Sum_probs=42.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .++.+|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++.+.+
T Consensus       410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l  458 (676)
T TIGR02632       410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEI  458 (676)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Confidence            4577899999987 78999999999999999999999999888776654

>PRK05693 short chain dehydrogenase; Provisional

Probab=93.59  E-value=0.15  Score=50.57  Aligned_cols=41  Identities=37%  Similarity=0.468  Sum_probs=36.2

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALAD  408 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~  408 (518)
                      |+++|.|+ ||.|++++..|.+.|++|++++|+.++.+.+.+
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   43 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA   43 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            57999987 789999999999999999999999888776653

>PRK06482 short chain dehydrogenase; Provisional

Probab=93.59  E-value=0.17  Score=50.24  Aligned_cols=71  Identities=20%  Similarity=0.261  Sum_probs=50.5

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCccEEEE
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGMILAN  433 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~divIn  433 (518)
                      |++||.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+..+...    .++.+   +...      .....|+|||
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   82 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS   82 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            67999986 789999999999999999999999988887766543221    12211   1110      1234699999


Q ss_pred             cCCCC
Q 010101          434 ASAIG  438 (518)
Q Consensus       434 atp~g  438 (518)
                      +....
T Consensus        83 ~ag~~   87 (276)
T PRK06482         83 NAGYG   87 (276)
T ss_pred             CCCCC
Confidence            87654

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=93.59  E-value=0.09  Score=50.20  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=32.7

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY  400 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~  400 (518)
                      +++++|+|+|+||.|..++..|+..|+ +|++++.+.
T Consensus        17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485          17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            457899999999999999999999999 999998763

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.56  E-value=0.16  Score=57.97  Aligned_cols=38  Identities=29%  Similarity=0.414  Sum_probs=34.8

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKA  405 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~  405 (518)
                      ++|.|||+|-||+.|++.++..|++|++++++.+..+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~  351 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDL  351 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence            68999999999999999999999999999999886544

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=93.55  E-value=5.1  Score=43.42  Aligned_cols=208  Identities=11%  Similarity=0.096  Sum_probs=123.5

Q ss_pred             CHHHHHHHHHHHHhhCCCEEEE----Eecc----CCCCcHHHHHHHhcC-CCCcEEEEeecCCCCCCCCCCcHHHHHHHH
Q 010101           19 TTEEMQASIEQAKVEGADLVEL----CIDS----MEFSHISEVDKLIQH-PTLPAIVSYRLKSSRKSSDEACKNTCLQVL   89 (518)
Q Consensus        19 ~~~~~~~~~~~~~~~g~D~vEl----RlD~----l~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll   89 (518)
                      +.++.+.-++..-+.|.+.||.    ..|.    +.+++.+.++.+++. .+.++..-+|..+--|...-. ++.....+
T Consensus        23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~-dDvv~~fv  101 (467)
T PRK14041         23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYA-DDVVELFV  101 (467)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCccccc-chhhHHHH
Confidence            3444444444445579999999    4553    235666778888764 467777777876665653333 55666778


Q ss_pred             HHHhhcCCcEEEEecCCCC--chhhHHHhhcCCCcEEEEeeecCCCCCC--ChhHHHHHHHHHHHcCCCEEEEEcccC--
Q 010101           90 RRALDLDVEFVEMDYEVAS--DPLMSEIIYSRSNTKIIVSSYLNGGGKP--TTEKLGDVIACMQATGADVMKLEIAVD--  163 (518)
Q Consensus        90 ~~~~~~g~~yvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~~tp--~~~~l~~~~~~~~~~gadivKia~~~~--  163 (518)
                      +.+++.|++.|-|=....+  .....+..++..+..+.++....  .+|  +.+.+.++.+++.+.|+|.+-|+=|+-  
T Consensus       102 ~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t--~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l  179 (467)
T PRK14041        102 KKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYT--VSPVHTLEYYLEFARELVDMGVDSICIKDMAGLL  179 (467)
T ss_pred             HHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEec--cCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCc
Confidence            9999999998877655432  11112222444455555444322  224  567899999999999999998887775  


Q ss_pred             CcccHHHHHHHhcc-CCCCEEEEe--cCCccchhhhcCCCCCCcccccccCC-CCCCCCCCHHHHHHHhh
Q 010101          164 SITDLAPVFEMLTH-CQVPLIALA--VGSRGLISQLLGPKFGGFLVYGSLGG-KSVPGLPTLVSLKQVYQ  229 (518)
Q Consensus       164 ~~~D~~~l~~~~~~-~~~p~i~~~--mG~~G~~sRi~~~~~gs~~ty~~~~~-~sApGQ~~~~~l~~~~~  229 (518)
                      ++.++.++.+.++. .+.|+-.=+  .--+|..+-+.+-..|....-+++.+ +.-.||++.+++...++
T Consensus       180 ~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~  249 (467)
T PRK14041        180 TPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFR  249 (467)
T ss_pred             CHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHH
Confidence            67788888776543 244431111  11122233333333454444444432 12346888888776654

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=93.52  E-value=0.49  Score=51.21  Aligned_cols=141  Identities=16%  Similarity=0.138  Sum_probs=0.0

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHH---------------HHHHHhcCcccccccccccCCCCc
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAK---------------ALADAVSGEALHFEYLHEFFPEKG  428 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~---------------~la~~~~~~~~~~~~l~~~~~~~~  428 (518)
                      .++||+|+|||+|..|.-+|..|...+.+|+++.|......               .+....+...+.+.+-..   ..+
T Consensus       201 ~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~---~~~  277 (461)
T PLN02172        201 PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKV---VYA  277 (461)
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCCCCceEECCcccceecCCeEEECCCCC---ccC


Q ss_pred             cEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCC----------eeeccHHHHHHHHHHHHH
Q 010101          429 MILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGA----------TVVSGVEMFIRQALGQFR  498 (518)
Q Consensus       429 divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~----------~~i~G~~ml~~Qa~~qf~  498 (518)
                      |.||-||  |..+..+...      ..+.+..|   .....+|.+..=--..          .......|+-.||..--+
T Consensus       278 D~Ii~~T--Gy~~~~pfL~------~~~~i~v~---~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~  346 (461)
T PLN02172        278 DTIVHCT--GYKYHFPFLE------TNGYMRID---ENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAA  346 (461)
T ss_pred             CEEEECC--cCCccccccC------cccceeeC---CCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHH


Q ss_pred             HhcCC--CCCHHHHHHHHHhhC
Q 010101          499 LFTGG--LAPEDFMRKLVLEQF  518 (518)
Q Consensus       499 lw~g~--~~p~~~~~~~~~~~~  518 (518)
                      .|.|+  -++.+.|++.+.+.|
T Consensus       347 v~sG~~~LPs~~~m~~~~~~~~  368 (461)
T PLN02172        347 VLSGRVTLPSEDKMMEDINAWY  368 (461)
T ss_pred             HHcCCCCCcCHHHHHHHHHHHH

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.50  E-value=0.14  Score=52.11  Aligned_cols=36  Identities=28%  Similarity=0.460  Sum_probs=32.1

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeC
Q 010101          363 SPIAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNR  398 (518)
Q Consensus       363 ~~l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nR  398 (518)
                      ..++||.++|.|+|   |+|+++|..|++.|++|.+..|
T Consensus         4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~   42 (299)
T PRK06300          4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTW   42 (299)
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEec
Confidence            35789999999996   9999999999999999998654

>PRK07775 short chain dehydrogenase; Provisional

Probab=93.48  E-value=0.19  Score=49.97  Aligned_cols=46  Identities=26%  Similarity=0.350  Sum_probs=39.3

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+.++++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.+
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~   54 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKI   54 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45678999997 78999999999999999999999988877766544

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=93.47  E-value=0.15  Score=51.81  Aligned_cols=37  Identities=27%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERA  403 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka  403 (518)
                      ++++||.|+ |..|+.++..|.+.|++|+++.|+.++.
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~   41 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDP   41 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCch
Confidence            689999995 8899999999999999999999886543

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=93.46  E-value=0.2  Score=48.34  Aligned_cols=115  Identities=21%  Similarity=0.211  Sum_probs=72.1

Q ss_pred             EEEEEccchhHHHHHHHHHHC--CC-eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSR--GA-RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~--G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      ++.++|.|..|..++..+..-  ++ -+.+++|+.++++++++.++....  .++.+ .....|++|.|.+..-.    .
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~--s~ide-~~~~~DlvVEaAS~~Av----~   74 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCV--SDIDE-LIAEVDLVVEAASPEAV----R   74 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCcc--ccHHH-HhhccceeeeeCCHHHH----H
Confidence            578999999999998877642  36 699999999999999998876443  33334 33668999988764311    0


Q ss_pred             CCCChhhhcCCCEEEEEeeC----CC-chHHHHHHHHCCCe------eeccHHHHHH
Q 010101          446 SPVPKEALKAYELVFDAVYT----PR-NTRLLREAAEVGAT------VVSGVEMFIR  491 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~Y~----P~-~T~ll~~A~~~G~~------~i~G~~ml~~  491 (518)
                       ..-+..|..+.-++=|+-.    |. ...+-..|+..|++      .+.|++.|-.
T Consensus        75 -e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~l~a  130 (255)
T COG1712          75 -EYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLDALAA  130 (255)
T ss_pred             -HHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhHHHHHH
Confidence             1122334443323323222    22 23455566777776      3567776644

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.44  E-value=0.22  Score=51.08  Aligned_cols=70  Identities=21%  Similarity=0.324  Sum_probs=51.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-cccc--c----ccccCCCCccEEEEcCC
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFE--Y----LHEFFPEKGMILANASA  436 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~--~----l~~~~~~~~divInatp  436 (518)
                      +.+++|.|+ |+.|.+++..++..|+ +|+.+.++.++.+.+.+++|... +...  +    +.+......|+++++++
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g  233 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVG  233 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCC
Confidence            379999998 9999999888888999 89999999999887777677532 1111  1    11111245899999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=93.41  E-value=0.12  Score=55.39  Aligned_cols=72  Identities=14%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             EEEEEccchhHHHHHH--HHH----HCCCeEEEEeCCHHHHHHHHHHhcC------ccccc---ccccccCCCCccEEEE
Q 010101          369 IFVLVGAGGAGRALAF--GAK----SRGARVIIFNRNYERAKALADAVSG------EALHF---EYLHEFFPEKGMILAN  433 (518)
Q Consensus       369 ~vlvlGaGg~araia~--~L~----~~G~~v~i~nRt~~ka~~la~~~~~------~~~~~---~~l~~~~~~~~divIn  433 (518)
                      ++.|||+|.+|.+.+.  .++    ..|.+|.++++++++++.+......      ....+   .++.+ .+.++|+||+
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~e-al~~AD~Vi~   80 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRRE-ALDGADFVIN   80 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHH-HhcCCCEEEE
Confidence            6899999988887555  444    2345899999999998887654421      00111   23333 5678999999


Q ss_pred             cCCCCCCC
Q 010101          434 ASAIGMEP  441 (518)
Q Consensus       434 atp~g~~~  441 (518)
                      +.++|..+
T Consensus        81 ai~~~~~~   88 (423)
T cd05297          81 TIQVGGHE   88 (423)
T ss_pred             eeEecCcc
Confidence            99976544

linked to 3D####ucture

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.40  E-value=0.3  Score=47.59  Aligned_cols=94  Identities=20%  Similarity=0.186  Sum_probs=58.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccccc--c----ccCCCCccEEEEcCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEYL--H----EFFPEKGMILANASAIG  438 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~l--~----~~~~~~~divInatp~g  438 (518)
                      .+.+++|.|+|++|++++..+...|.+|+++.++.++.+.+ +.++... +...+.  .    .......|+++++++..
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELA-KELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            57899999999999999988888999999999998876655 4454321 111110  0    00124589999987631


Q ss_pred             CCCCCCCCCCChhhhcCCCEEEEEeeC
Q 010101          439 MEPNSDQSPVPKEALKAYELVFDAVYT  465 (518)
Q Consensus       439 ~~~~~~~~~~~~~~l~~~~~v~Di~Y~  465 (518)
                      ..     .......+.+...++++.-.
T Consensus       213 ~~-----~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         213 ET-----LAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             HH-----HHHHHHhcccCCEEEEEccC
Confidence            00     00112345566666666543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	518
2gpt_A	523	Crystal Structure Of Arabidopsis Dehydroquinate Deh		1e-121
2o7q_A	523	Crystal Structure Of The A. Thaliana Dhq-Dehydroshi		1e-118
1nvt_A	287	Crystal Structure Of Shikimate Dehydrogenase (Aroe		2e-31
2egg_A	297	Crystal Structure Of Shikimate 5-Dehydrogenase (Aro		2e-24
1wxd_A	263	Crystal Structure Of Shikimate 5-dehydrogenase (aro		6e-23
3don_A	277	Crystal Structure Of Shikimate Dehydrogenase From S		7e-23
2hk7_A	269	Crystal Structure Of Shikimate Dehydrogenase From A		1e-22
2hk9_A	275	Crystal Structure Of Shikimate Dehydrogenase From A		1e-22
3toz_A	315	2.2 Angstrom Crystal Structure Of Shikimate 5-Dehyd		1e-21
3t4e_A	312	1.95 Angstrom Crystal Structure Of Shikimate 5-Dehy		6e-20
1npy_A	271	Structure Of Shikimate 5-Dehydrogenase-Like Protein		1e-15
1vi2_A	300	Crystal Structure Of Shikimate-5-Dehydrogenase With		3e-15
1npd_A	288	X-Ray Structure Of Shikimate Dehydrogenase Complexe		4e-15
3phg_A	269	Crystal Structure Of The Shikimate 5-Dehydrogenase		9e-15
4foo_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		1e-14
4fpx_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-14
4fr5_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-14
4fos_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-14
4fq8_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-14
3fbt_A	282	Crystal Structure Of A Chorismate MutaseSHIKIMATE 5		8e-14
4fsh_A	271	Crystal Structure Of Shikimate Dehydrogenase (aroe)		3e-12
3pgj_A	302	2.49 Angstrom Resolution Crystal Structure Of Shiki		2e-10
3o8q_A	281	1.45 Angstrom Resolution Crystal Structure Of Shiki		2e-10
3o8q_B	275	1.45 Angstrom Resolution Crystal Structure Of Shiki		2e-10
2nlo_A	302	Crystal Structure Of The Quinate Dehydrogenase From		6e-10
3jyo_A	283	Quinate Dehydrogenase From Corynebacterium Glutamic		8e-10
1nyt_A	271	Shikimate Dehydrogenase Aroe Complexed With Nadp+ L		4e-09
3tum_B	269	2.15 Angstrom Resolution Crystal Structure Of A Shi		6e-09
3u62_A	253	Crystal Structure Of Shikimate Dehydrogenase From T		2e-08
1qfe_A	252	The Structure Of Type I 3-Dehydroquinate Dehydratas		3e-08
3o1n_A	276	1.03 Angstrom Crystal Structure Of Q236a Mutant Typ		9e-07
3m7w_A	255	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		9e-07
3l2i_A	276	1.85 Angstrom Crystal Structure Of The 3-Dehydroqui		1e-06
4guf_A	276	1.5 Angstrom Crystal Structure Of The Salmonella En		2e-06
3nnt_A	276	Crystal Structure Of K170m Mutant Of Type I 3-Dehyd		7e-06
3js3_A	258	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		2e-05
1p74_A	272	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-05
1sfl_A	238	1.9a Crystal Structure Of Staphylococcus Aureus Typ		3e-05
1sfj_A	238	2.4a Crystal Structure Of Staphylococcus Aureus Typ		9e-05
3pwz_A	272	Crystal Structure Of An Ael1 Enzyme From Pseudomona		1e-04

>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate Dehydratase- Shikimate Dehydrogenase In Complex With Tartrate And Shikimate Length = 523

Iteration: 1
 Score =  431 bits (1107), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/512 (44%), Positives = 326/512 (63%), Gaps = 5/512 (0%)
Query: 6   KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSM-EFSHISEVDKLIQHPTLPA 64
           KN  L+C  +  ++ ++M     +A   GADLVE+ +D + +F+ + ++  +I+   LP 
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 65  IVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKI 124
           + +YR K       E  +N    VLR A++L  ++++++ +VAS+ + S         K+
Sbjct: 62  LFTYRPKW-EGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKV 120
Query: 125 IVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIA 184
           IVSS+ N    P+ E L  ++A +Q TGAD++K+      I D+A +F + +  QVP I 
Sbjct: 121 IVSSH-NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIG 179
Query: 185 LAVGSRGLISQLLGPKFGGFLVYGSLGGKSV--PGLPTLVSLKQVYQLEHINPDTKIFGL 242
           L +G RGL+S++L  KFGG+L +G+L    V  PG PT+  L  +Y    I PDTK++G+
Sbjct: 180 LVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGI 239
Query: 243 VSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPA 302
           +  PV HSK PI+HN AF+   FNG+YV +LVD++  F + YS +DFAGFS  IPHKE A
Sbjct: 240 IGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAA 299
Query: 303 VACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHT 362
           + CCDEV PLAKSIGAVNTI+RR  DGKL+GYNTDC  +ISAIED LR     + V S +
Sbjct: 300 LQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSS 359
Query: 363 SPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
           SP+A K                  K +GA+V+I NR YERA  LA+A+ G+AL    L  
Sbjct: 360 SPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDN 419
Query: 423 FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV 482
           + PE GM+LAN +++GM+PN +++P+ K+ALK Y LVFDAVYTPR TRLLREA E GA  
Sbjct: 420 YHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAIT 479
Query: 483 VSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
           VSG EMF+RQA  QF +FTG  AP++   +++
Sbjct: 480 VSGSEMFVRQAYEQFEIFTGLPAPKELYWQIM 511

>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H) Length = 523

Iteration: 1
 Score =  423 bits (1087), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/512 (44%), Positives = 324/512 (63%), Gaps = 5/512 (0%)
Query: 6   KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSM-EFSHISEVDKLIQHPTLPA 64
           KN  L+C  +  ++ ++M     +A   GADLVE+ +D + +F+ + ++  +I+   LP 
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 65  IVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKI 124
           + +YR K       E  +N    VLR A++L  ++++++ +VAS+ + S         K+
Sbjct: 62  LFTYRPKW-EGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKV 120
Query: 125 IVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIA 184
           IVSS+ N    P+ E L  ++A +Q TGAD++K+      I D+A +F + +  QVP I 
Sbjct: 121 IVSSH-NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIG 179
Query: 185 LAVGSRGLISQLLGPKFGGFLVYGSLGGKSV--PGLPTLVSLKQVYQLEHINPDTKIFGL 242
           L +G RGL+S++L  KFGG+L +G+L    V  PG PT+  L  +Y    I PDTK++G+
Sbjct: 180 LVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGI 239
Query: 243 VSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPA 302
           +  PV HSK PI+HN AF+   FNG+YV +LVD++  F + YS +DFAGFS  IPHKE A
Sbjct: 240 IGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAA 299
Query: 303 VACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHT 362
           +  CDEV PLAKSIGAVNTI+RR  DGKL+GYNTD   +ISAIED LR     + V S +
Sbjct: 300 LQXCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSSS 359
Query: 363 SPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
           SP+A K                  K +GA+V+I NR YERA  LA+A+ G+AL    L  
Sbjct: 360 SPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDN 419
Query: 423 FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV 482
           + PE GM+LAN +++GM+PN +++P+ K+ALK Y LVFDAVYTPR TRLLREA E GA  
Sbjct: 420 YHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAIT 479
Query: 483 VSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
           VSG EMF+RQA  QF +FTG  AP++   +++
Sbjct: 480 VSGSEMFVRQAYEQFEIFTGLPAPKELYWQIM 511

>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or Mj1084) In Complex With Nadp+ Length = 287

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 147/296 (49%), Gaps = 27/296 (9%)
Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVP--MLVDDVKEFFRTYSGTDFA 290
           IN  TK+ GL+ +PV HS  PI+HN AF+    N +YV   +L +++K            
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66
Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
           GF+V IPHK   +   DE+   A+ IGAVNTI  +  DGK +GYNTD   A  A+E+ + 
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEIG 124
Query: 351 ERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV 410
             +  N V       A  +                  ++   +II NR  E+A+ALA  +
Sbjct: 125 RVKDKNIVIYGAGGAARAVAFEL--------------AKDNNIIIANRTVEKAEALAKEI 170
Query: 411 S-------GEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPK-EALKAYELVFDA 462
           +       GE + F  L        +I+ NA+ IGM PN D  P+ K E L+   +V D 
Sbjct: 171 AEKLNKKFGEEVKFSGLDVDLDGVDIII-NATPIGMYPNIDVEPIVKAEKLREDMVVMDL 229
Query: 463 VYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           +Y P  T LL+EA +V A  ++G+ M I Q    F+++TG     + M+  ++++ 
Sbjct: 230 IYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDKI 285

>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Geobacillus Kaustophilus Length = 297

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 127/285 (44%), Gaps = 21/285 (7%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSVG 295
           K++GL+  PV HS  P++HN AF        Y    V+   V            AG +V 
Sbjct: 24  KVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVT 83
Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
           IPHK   +   DEV   A+ IGAVNTII    DG+LVGYNTD    + A+E+ +      
Sbjct: 84  IPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEEM------ 135
Query: 356 NGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGEAL 415
                + +    +I                  +   R+ + NR  E+A+ L     G+  
Sbjct: 136 -----NITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVR--EGDER 188
Query: 416 HFEYLHEFFPEKGM----ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRL 471
              Y      E  +    I+ N +++GM P  +  P+  E L+   +V D +Y P  T+ 
Sbjct: 189 RSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETKW 248
Query: 472 LREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE 516
           L+EA   GA V +GV M + Q    F  +TG     + M++LV+E
Sbjct: 249 LKEAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVIE 293

>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From Thermus Thermophilus Hb8 Length = 263

Iteration: 1
 Score =  105 bits (262), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 121/269 (44%), Gaps = 33/269 (12%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIY----VPM--LVDDVKEFFRTYSGTDFAGFS 293
           F ++ +PV HS  P +H  A       G Y     P+  L   +KE  R + G +     
Sbjct: 4   FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRAFRGVNLT--- 60
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
             +P KE A+A  D V P A+ IGAVNT+++  ++G+L G+NTD    + A++       
Sbjct: 61  --LPLKEAALAHLDWVSPEAQRIGAVNTVLQ--VEGRLFGFNTDAPGFLEALKAG----- 111
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
           GI        P+ G                   ++ G  V ++NR  +RA ALA+     
Sbjct: 112 GI--------PLKGPALVLGAGGAGRAVAFALREA-GLEVWVWNRTPQRALALAEEFGLR 162
Query: 414 ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLR 473
           A+  E   E       +L NA+ +G+E +   SP+P E         D VY P  TR LR
Sbjct: 163 AVPLEKARE-----ARLLVNATRVGLE-DPSASPLPAELFPEEGAAVDLVYRPLWTRFLR 216
Query: 474 EAAEVGATVVSGVEMFIRQALGQFRLFTG 502
           EA   G  V +G+ M   Q    FRL+TG
Sbjct: 217 EAKAKGLKVQTGLPMLAWQGALAFRLWTG 245

>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Staphylococcus Epidermidis Length = 277

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 136/291 (46%), Gaps = 40/291 (13%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIY--VPMLVDDVKEFFRTYSGTDFAGFSVGIP 297
           F ++ NP+ HS  P++H+  F+       Y  + + V+  ++  +  S     GF+V IP
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62
Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTD-------CESAISAIEDALR 350
           HKE  +   D+++  AKS+GAVNT++ +  DGK +GYNTD        +     IEDA  
Sbjct: 63  HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIEDAYI 120
Query: 351 ERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV 410
              G  G +   +    KI                       + + NR   R    +  +
Sbjct: 121 LILGAGGASKGIANELYKIVR-------------------PTLTVANRTMSRFNNWSLNI 161
Query: 411 SGEAL-HFE-YLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN 468
           +   L H E +L EF      I+ N +  GM  N+D S +    L ++ LV D VY P  
Sbjct: 162 NKINLSHAESHLDEF-----DIIINTTPAGMNGNTD-SVISLNRLASHTLVSDIVYNPYK 215
Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE-DFMRKLVLEQF 518
           T +L EA + G  + +G++MF+ Q    F+++T  L P+   M+ +V+++ 
Sbjct: 216 TPILIEAEQRGNPIYNGLDMFVHQGAESFKIWT-NLEPDIKAMKNIVIQKL 265

>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Mercury At 2.5 Angstrom Resolution Length = 269

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 131/276 (47%), Gaps = 23/276 (8%)
Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFA 290
           IN  T+++G++  PV HS  P+  N   R+   N +Y+   ++  ++K+ F  +      
Sbjct: 2   INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 61
Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
           G +V +P KE  +   D V   AK IGAVNT+  +  +GK  GYNTD    + +++  + 
Sbjct: 62  GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 119
Query: 351 ERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV 410
           E      V   +  + G                      GA+V ++NR  E+A  LA   
Sbjct: 120 E------VKEKSILVLG-------AGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF 166
Query: 411 SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
             E ++     E   +K  ++ N +++G++ + D      + +K   +V D +Y  + T+
Sbjct: 167 PLEVVNSP---EEVIDKVQVIVNTTSVGLK-DEDPEIFNYDLIKKDHVVVDIIY--KETK 220
Query: 471 LLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAP 506
           LL++A E GA ++ G+ M + Q +  F+++ G   P
Sbjct: 221 LLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 256

>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Shikimate And Nadp+ At 2.2 Angstrom Resolution Length = 275

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 131/276 (47%), Gaps = 23/276 (8%)
Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFA 290
           IN  T+++G++  PV HS  P+  N   R+   N +Y+   ++  ++K+ F  +      
Sbjct: 8   INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 67
Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
           G +V +P KE  +   D V   AK IGAVNT+  +  +GK  GYNTD    + +++  + 
Sbjct: 68  GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 125
Query: 351 ERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV 410
           E      V   +  + G                      GA+V ++NR  E+A  LA   
Sbjct: 126 E------VKEKSILVLG-------AGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF 172
Query: 411 SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
             E ++     E   +K  ++ N +++G++ + D      + +K   +V D +Y  + T+
Sbjct: 173 PLEVVNSP---EEVIDKVQVIVNTTSVGLK-DEDPEIFNYDLIKKDHVVVDIIY--KETK 226
Query: 471 LLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAP 506
           LL++A E GA ++ G+ M + Q +  F+++ G   P
Sbjct: 227 LLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 262

>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase From Listeria Monocytogenes In Complex With Nad. Length = 315

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 137/300 (45%), Gaps = 30/300 (10%)
Query: 231 EHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDD--VKEFFRTYSGTD 288
           E I   T++ GL++ P+ HS  P +HN AF     + +Y+   V D  +K+  + +   +
Sbjct: 31  ERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMN 90
Query: 289 FAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDA 348
             G++V +P+K       D++ P A+ +GAVNT++    DG L G+ TD    + A+++A
Sbjct: 91  LRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA 148
Query: 349 LRERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVI-IFNRN---YERAK 404
             +             I GK                     G + I IFNR    Y  A+
Sbjct: 149 GHD-------------IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAE 195
Query: 405 ALADAVS------GEALHFEYLHEFFPE--KGMILANASAIGMEPNSDQSPVPK-EALKA 455
              + ++       +    E   +   E  + +I  NA+ +GM+P   ++ +P  + L+ 
Sbjct: 196 KTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRP 255
Query: 456 YELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVL 515
             +V D VY P  TRLL  A E G   ++G+ M + Q    F ++T    P D++++++ 
Sbjct: 256 ELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 315

>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium In Complex With Nad Length = 312

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 129/293 (44%), Gaps = 32/293 (10%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTD---FAGFSV 294
           ++ GL++ P+ HS  P + N A         Y+   VD+   F     G       G  V
Sbjct: 32  ELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTT-FASAIEGLKALKMRGTGV 90
Query: 295 GIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQG 354
            +P+K+ A    DE+ P AK +GA+NTI+    DG L GYNTD    I AI+++     G
Sbjct: 91  SMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----G 143
Query: 355 INGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVI-IFNRN---YERAKALADAV 410
            +        + GK                     G + I +FNR    +E+A A A  V
Sbjct: 144 FD--------MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRV 195
Query: 411 SGEA------LHFEYLHEFFP--EKGMILANASAIGMEPNSDQSPVPKEALKAYE-LVFD 461
           +               H F        IL N + +GM+P  ++S +   +L   E LV +
Sbjct: 196 NENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTE 255
Query: 462 AVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
            VY P  T+LL++A + G   + G  M + Q   QF L+TG   P D++++++
Sbjct: 256 CVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVM 308

>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607 Length = 271

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 27/273 (9%)
Query: 233 INPDTKI-FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAG 291
           IN DT++   L   P     G   HN  +     N IY      D++   +        G
Sbjct: 2   INKDTQLCMSLSGRPSNF--GTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 292 FSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRE 351
            +V +P KE  +   DE+HP A++I +VNTI+    +G L  YNTD  + +  IE     
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117
Query: 352 RQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRG-ARVIIFNRNYERAKALADAV 410
           +     V  H S    K                  K+ G  ++ I+ RN +  + LA A+
Sbjct: 118 KNA--KVIVHGSGGMAK------------AVVAAFKNSGFEKLKIYARNVKTGQYLA-AL 162
Query: 411 SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV--PKEALKAYELVFDAVYTPRN 468
            G A    Y++    ++  IL N ++IGM+   ++  +  PK  +    + FD V  P  
Sbjct: 163 YGYA----YINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVE 218
Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFT 501
           T  +R A   G   +SG  + + QA+ QF L+T
Sbjct: 219 TPFIRYAQARGKQTISGAAVIVLQAVEQFELYT 251

>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad Length = 300

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 123/292 (42%), Gaps = 32/292 (10%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTD---FAGFSV 294
           ++ GL + P+ HS  P   N A         Y    VD+   F     G       G  V
Sbjct: 10  ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDN-DSFPGAIEGLKALKXRGTGV 68
Query: 295 GIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQG 354
             P+K+ A    DE+ P AK +GA+NTI+    DG L GYNTD    I AI+++     G
Sbjct: 69  SXPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----G 121
Query: 355 INGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVI-IFNRN---YERAKALADAV 410
            +        I GK                     G + I +FNR    +++A A A  V
Sbjct: 122 FD--------IKGKTXVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRV 173
Query: 411 SGEALHFEYLHEFFPEKGM--------ILANASAIGMEPNSDQSPVPK-EALKAYELVFD 461
           +        + +   ++          IL N + +G +P  ++S V     L    LV +
Sbjct: 174 NENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGLLVTE 233
Query: 462 AVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKL 513
            VY P  T+LL++A + G   + G    + Q   QF L+TG   P ++++++
Sbjct: 234 CVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 285

>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With Nad+ From E.Coli (Ydib) Northeast Structural Genomics Research Consortium (Nesg) Target Er24 Length = 288

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 123/292 (42%), Gaps = 32/292 (10%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTD---FAGFSV 294
           ++ GL + P+ HS  P   N A         Y    VD+   F     G       G  V
Sbjct: 8   ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDN-DSFPGAIEGLKALKXRGTGV 66
Query: 295 GIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQG 354
             P+K+ A    DE+ P AK +GA+NTI+    DG L GYNTD    I AI+++     G
Sbjct: 67  SXPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----G 119
Query: 355 INGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVI-IFNRN---YERAKALADAV 410
            +        I GK                     G + I +FNR    +++A A A  V
Sbjct: 120 FD--------IKGKTXVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRV 171
Query: 411 SGEALHFEYLHEFFPEKGM--------ILANASAIGMEPNSDQSPVPK-EALKAYELVFD 461
           +        + +   ++          IL N + +G +P  ++S V     L    LV +
Sbjct: 172 NENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGLLVTE 231
Query: 462 AVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKL 513
            VY P  T+LL++A + G   + G    + Q   QF L+TG   P ++++++
Sbjct: 232 CVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 283

>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori Length = 269

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 117/279 (41%), Gaps = 41/279 (14%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
           K FG+  NP+ HSK P++HN  F    +  RF G Y P+L+         +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
           V +P KE A   CD++  +A   GAVNT++    + +LVGYNTD      +++    +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
            I G       +A ++                 K +G +V + NR+  R       +  +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
                      P K    ++ NA++  +    ++ P+ KE LK Y    +L +D  Y   
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYGFL 213
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAP 506
            T  L  A E+      G +M I QA   F  F+    P
Sbjct: 214 -TPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIP 251

>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 45/293 (15%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
           K FG+  NP+ HSK P++HN  F    +  RF G Y P+L+         +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
           V +P KE A   CD++  +A   GAVNT++    + +LVGYNTD      +++    +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
            I G       +A ++                 K +G +V + NR+  R       +  +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
                      P K    ++ NA++  +    ++ P+ KE LK Y    +L +D  Y   
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYGFL 213
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
            T  L  A E+      G +M I +A   F  F+    P     + MR + LE
Sbjct: 214 -TPFLSLAKELKTPFQDGKDMLIYKAALSFEKFSASQIPYSKAFEVMRSVFLE 265

>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 122/293 (41%), Gaps = 45/293 (15%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
           K FG+  NP+ HSK P++HN  F    +  RF G Y P+L+         +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
           V +P KE A   CD++  +A   GAVNT++    + +LVGYNTD      +++    +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
            I G       +A ++                 K +G +V + NR+  R       +  +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
                      P K    ++ NA++  +    ++ P+ KE LK Y    +L +D  Y   
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYGFL 213
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
            T  L  A E+      G +M I  A   F  F+    P     + MR + LE
Sbjct: 214 -TPFLSLAKELKTPFQDGKDMLIYNAALSFEKFSASQIPYSKAFEVMRSVFLE 265

>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 45/293 (15%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
           K FG+  NP+ HSK P++HN  F    +  RF G Y P+L+         +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
           V +P KE A   CD++  +A   GAVNT++    + +LVGYNTD      +++    +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
            I G       +A ++                 K +G +V + NR+  R       +  +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
                      P K    ++ NA++  +    ++ P+ KE LK Y    +L +D + +  
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LASGF 212
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
            T  L  A E+      G +M I QA   F  F+    P     + MR + LE
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVFLE 265

>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 122/293 (41%), Gaps = 45/293 (15%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
           K FG+  NP+ HSK P++HN  F    +  RF G Y P+L+         +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
           V +P KE A   CD++  +A   GAVNT++    + +LVGYNTD      +++    +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
            I G       +A ++                 K +G +V + NR+  R       +  +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
                      P K    ++ NA++  +    ++ P+ KE LK Y    +L +D  Y   
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYGFL 213
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
            T  L  A E+      G +M I  A   F  F+    P     + MR + LE
Sbjct: 214 -TPFLSLAKELKTPFQDGKDMLIYAAALSFEKFSASQIPYSKAFEVMRSVFLE 265

>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 123/296 (41%), Gaps = 51/296 (17%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
           K FG+  NP+ HSK P++HN  F    +  RF G Y P+L+         +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
           V +P KE A   CD++  +A   GAVNT++    + +LVGYNTD      +++    +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQKNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
            I G       +A ++                 K +G +V + NR+  R       +  +
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFD---AVY 464
                      P K    ++ NA++  +    ++ P+ KE LK Y    +L +D      
Sbjct: 164 CF-------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAAGFL 213
Query: 465 TPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
           TP     L  A E+      G +M I QA   F  F+    P     + MR + LE
Sbjct: 214 TP----FLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVFLE 265

>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5- Dehydrogenase Fusion Protein From Clostridium Acetobutylicum Length = 282

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 107/264 (40%), Gaps = 29/264 (10%)
Query: 236 DTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIY----VPMLVDDVKEFFRTYSGTDFAG 291
           +T I+GL+   +GHS    +H   F      GIY    VP   + +KE   T+      G
Sbjct: 4   NTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPK--EKLKESVDTFKIIKCGG 61
Query: 292 FSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRE 351
            +V IP+K   +    E+   A+ IGAVNT ++   +G + G+NTD              
Sbjct: 62  LNVTIPYKVEVMKELYEISEKARKIGAVNT-LKFSREG-ISGFNTD-------------- 105
Query: 352 RQGINGVASHTS-PIAGKIXXXXXXXXXXXXXXXXXKSRGAR-VIIFNRNYERAKALADA 409
             G   + S     I   I                 K   A+ + +  RN E+       
Sbjct: 106 YIGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEK----TSE 161
Query: 410 VSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNT 469
           + GE     Y  E    KG ++ N +  GM P   +SPV KE +  +    D +Y P  T
Sbjct: 162 IYGEFKVISY-DELSNLKGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVET 220
Query: 470 RLLREAAEVGATVVSGVEMFIRQA 493
             L+ A E G   V+G+ M + QA
Sbjct: 221 LFLKYARESGVKAVNGLYMLVSQA 244

>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) Clinical Variant V2356 From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 121/293 (41%), Gaps = 45/293 (15%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFS 293
           K FG+  NP+ HSK P++HN  F    +   F G Y P+L+         +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLPLESHIKNEFLHLGLSGAN 63
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
           V +P KE A   CD++  +A    ++NT++    + +LVGYNTD      +++    +  
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECASINTLVLE--NDELVGYNTDALGFYLSLKHQNYQNA 121
Query: 354 GINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSGE 413
            I G       +A  +                 K +G +V + NR+  R       +  +
Sbjct: 122 LILGSGGSAKALACGL-----------------KKQGLKVSVLNRS-PRGLDFFQRLGCD 163
Query: 414 ALHFEYLHEFFPEKGM--ILANASAIGMEPNSDQSPVPKEALKAY----ELVFDAVYTPR 467
                      P K    ++ NA++  +   +++ P+ KE LK Y    +L +D  Y   
Sbjct: 164 CF-------MEPPKSAFDLIINATSASL---NNELPLNKEVLKGYFKEAKLAYDLAYGFL 213
Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE----DFMRKLVLE 516
            T  L  A E+      G +M I QA   F  F+    P     + MR + LE
Sbjct: 214 -TPFLALAKELKIPFQDGKDMLIYQASLSFEKFSASQIPYSKAFEVMRSVFLE 265

>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Shikimate Length = 302

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 32/273 (11%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML--VDDVKEFFRTYSGTDFAGFSVGIP 297
           + +  NP+ HSK P +H    R T+ + IY      VD   E  + +      G +V +P
Sbjct: 32  YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVP 91
Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGING 357
            KE A    D +   A+  GAVNT +++  DG+++G NTD E     ++D L ++  + G
Sbjct: 92  FKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGE---GLVQDLLAQQVLLKG 147
Query: 358 VASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSG----E 413
                      I                   + A + + NR + +A+ LA+ V+     +
Sbjct: 148 AT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVK 198
Query: 414 ALHFEYLHEFFPEKGMILANASAIGME---PNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
           A  FE L + +     ++ N+++  ++   P  D  PV      +  + +D +Y    T 
Sbjct: 199 AQAFEQLKQSYD----VIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGKGYTV 249
Query: 471 LLREAAEVG-ATVVSGVEMFIRQALGQFRLFTG 502
             + A + G A  + G+ M + QA   F L+ G
Sbjct: 250 FNQWARQHGCAQAIDGLGMLVGQAAESFMLWRG 282

>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 281

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 32/273 (11%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML--VDDVKEFFRTYSGTDFAGFSVGIP 297
           + +  NP+ HSK P +H    R T+ + IY      VD   E  + +      G +V +P
Sbjct: 11  YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVP 70
Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGING 357
            KE A    D +   A+  GAVNT +++  DG+++G NTD E     ++D L ++  + G
Sbjct: 71  FKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGE---GLVQDLLAQQVLLKG 126
Query: 358 VASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSG----E 413
                      I                   + A + + NR + +A+ LA+ V+     +
Sbjct: 127 AT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVK 177
Query: 414 ALHFEYLHEFFPEKGMILANASAIGME---PNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
           A  FE L + +     ++ N+++  ++   P  D  PV      +  + +D +Y    T 
Sbjct: 178 AQAFEQLKQSYD----VIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGKGYTV 228
Query: 471 LLREAAEVG-ATVVSGVEMFIRQALGQFRLFTG 502
             + A + G A  + G+ M + QA   F L+ G
Sbjct: 229 FNQWARQHGCAQAIDGLGMLVGQAAESFMLWRG 261

>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 275

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 118/273 (43%), Gaps = 32/273 (11%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML--VDDVKEFFRTYSGTDFAGFSVGIP 297
           + +  NP+ HSK P +H    R T+ + IY      VD   E  + +      G +V +P
Sbjct: 5   YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVP 64
Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGING 357
            KE A    D +   A+  GAVNT +++  DG+++G NTD E     ++D L ++  + G
Sbjct: 65  FKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGE---GLVQDLLAQQVLLKG 120
Query: 358 VASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSG----E 413
                      I                   + A + + NR + +A+ LA+ V+     +
Sbjct: 121 AT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVK 171
Query: 414 ALHFEYLHEFFPEKGMILANASAIGME---PNSDQSPVPKEALKAYELVFDAVYTPRNTR 470
           A  FE L + +     ++ N+++  ++   P  D  PV      +  + +D +Y    T 
Sbjct: 172 AQAFEQLKQSYD----VIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGKGYTV 222
Query: 471 LLREAAEVG-ATVVSGVEMFIRQALGQFRLFTG 502
             + A + G A  + G+ M + QA   F L+ G
Sbjct: 223 FNQWARQHGCAQAIDGLGMLVGQAAESFMLWRG 255

>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From Corynebacterium Glutamicum Length = 302

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 122/299 (40%), Gaps = 35/299 (11%)
Query: 225 KQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNP-------AFRHTRFNGIYVPMLVDDV 277
           +Q+Y    +N D+ + GL+   +  S+ P +H         A  + R + +       D+
Sbjct: 12  EQLYFQGAMN-DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDL 70
Query: 278 KEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPID--GKLVGYN 335
           K          F G ++  P+K+  +   DEV   A  +GAVNT++   ID  G   G+N
Sbjct: 71  KTLLDAALYLGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV---IDATGHTTGHN 127
Query: 336 TDCESAISAIEDALRERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVII 395
           TD       +E+ L   +  + V      +   +                      ++ +
Sbjct: 128 TDVSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQ------------KLQV 175
Query: 396 FNRNYERAKALAD----AVSGEAL---HFEYLHEFFPEKGMILANASAIGMEPNSDQSPV 448
            + +  RA+ALAD    AV  EA+       + +       ++ NA+ +GM P    +  
Sbjct: 176 ADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVV-NATPMGM-PAHPGTAF 233
Query: 449 PKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE 507
               L     V D VY P  T LL+ A  +G   + G  M I QA+  FRLFT GL P+
Sbjct: 234 DVSCLTKDHWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFT-GLEPD 291

>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In Complex With Nad Length = 283

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 116/288 (40%), Gaps = 34/288 (11%)
Query: 236 DTKIFGLVSNPVGHSKGPILHNP-------AFRHTRFNGIYVPMLVDDVKEFFRTYSGTD 288
           D+ + GL+   +  S+ P +H         A  + R + +       D+K          
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62
Query: 289 FAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPID--GKLVGYNTDCESAISAIE 346
           F G ++  P+K+  +   DEV   A  +GAVNT++   ID  G   G+NTD       +E
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV---IDATGHTTGHNTDVSGFGRGME 119
Query: 347 DALRERQGINGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKAL 406
           + L   +  + V      +   +                      ++ + + +  RA+AL
Sbjct: 120 EGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQ------------KLQVADLDTSRAQAL 167
Query: 407 AD----AVSGEAL---HFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELV 459
           AD    AV  EA+       + +       ++ NA+ +GM P    +      L     V
Sbjct: 168 ADVINNAVGREAVVGVDARGIEDVIAAADGVV-NATPMGM-PAHPGTAFDVSCLTKDHWV 225
Query: 460 FDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPE 507
            D VY P  T LL+ A  +G   + G  M I QA+  FRLFT GL P+
Sbjct: 226 GDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFT-GLEPD 272

>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+ Length = 271

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 111/276 (40%), Gaps = 30/276 (10%)
Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML--VDDVKEFFRTYSGTDFAGFSVG 295
           + + +  NP+ HSK P +H    +       Y  +L  ++D       +      G +V 
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61
Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
           +P KE A A  DE+   A   GAVNT++R   DG+L+G NTD    +S +E     R G+
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERLSFIRPGL 120
Query: 356 NGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAV----S 411
             +       +  +                  S    V I NR   RA+ LA       S
Sbjct: 121 RILLIGAGGASRGVLLPLL-------------SLDCAVTITNRTVSRAEELAKLFAHTGS 167
Query: 412 GEALHFEYL--HEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNT 469
            +AL  + L  HEF      ++ NA++ G+  + D   +P   +      +D  Y    T
Sbjct: 168 IQALSMDELEGHEF-----DLIINATSSGI--SGDIPAIPSSLIHPGIYCYDMFYQKGKT 220
Query: 470 RLLREAAEVGATV-VSGVEMFIRQALGQFRLFTGGL 504
             L    + G+     G+ M + QA   F L+ G L
Sbjct: 221 PFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVL 256

>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Thermotoga Maritima Length = 253

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 118/280 (42%), Gaps = 41/280 (14%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIY----VPMLVDDVKEFFRTYSGTDFAGFSVG 295
           F ++  PV HS  P L+N  F+    N  Y    +P    D  E  R     D  GF+  
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDT-EIRRILEEYD--GFNAT 59
Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
           IPHKE  +   +     A+ I AVN + R    GK  GYNTD                 +
Sbjct: 60  IPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDW----------------V 96
Query: 356 NGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGAR-VIIFNRNYERAKALADAVSGEA 414
             V S       +                     G + + + NR  ERAKAL   V  + 
Sbjct: 97  GVVKSLEGVEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV--KI 154
Query: 415 LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLRE 474
              + L E   +K   L N +++GM+   ++ PV  ++LK   LV+D +Y   +T L+ +
Sbjct: 155 FSLDQLDEVV-KKAKSLFNTTSVGMK--GEELPVSDDSLKNLSLVYDVIYF--DTPLVVK 209
Query: 475 AAEVGAT-VVSGVEMFIRQALGQFRLFTGGLAPEDFMRKL 513
           A ++G   ++ G  MF  QA+   +++  G+  E+  +++
Sbjct: 210 ARKLGVKHIIKGNLMFYYQAMENLKIW--GIYDEEVFKEV 247

>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From Salmonella Typhi Length = 252

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 86/181 (47%), Gaps = 11/181 (6%)
Query: 60  PTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLD---VEFVEMDYEVASDPLMSEII 116
           P +P + ++R  S+++  ++         L RA  +D   V+ ++++       + + + 
Sbjct: 73  PDIPLLFTFR--SAKEGGEQTITTQHYLTLNRAA-IDSGLVDMIDLELFTGDADVKATVD 129
Query: 117 YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEI----AVDSITDLAPVF 172
           Y+ ++   +V S  +    P+ E++   +  MQA GAD+ K+ +      D +T L    
Sbjct: 130 YAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATL 189
Query: 173 EMLTH-CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLE 231
           EM  H    P+I +++   G+IS+L G  FG    +G++   S PG   +  L+ V  + 
Sbjct: 190 EMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMIL 249
Query: 232 H 232
           H
Sbjct: 250 H 250

>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Length = 276

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 36  DLVELCIDSMEFSHISEVDKLIQHP-TLPAIVS-----YRLKSSRKSSDEACKN-TCLQV 88
           D++E  +D   F++++  + +++    +  I++     +  +S+++  ++A      + +
Sbjct: 67  DILEWRVD--HFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDL 124
Query: 89  LRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIAC 147
            R A+D   V+ ++++     D + + + Y+  +   ++ S  +    P  E++   +  
Sbjct: 125 NRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK 184
Query: 148 MQATGADVMKLEI----AVDSITDLAPVFEMLT-HCQVPLIALAVGSRGLISQLLGPKFG 202
           MQ  GAD+ K+ +      D +T L    EM   +   P+I +++   G+IS+L G  FG
Sbjct: 185 MQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFG 244
Query: 203 GFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
               +G++   S PG  ++  L+ V  + H
Sbjct: 245 SAATFGAVKKASAPGAISVADLRTVLTILH 274

>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Covalent Complex With Dehydroquinate Length = 255

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 36  DLVELCIDSMEFSHISEVDKLIQHP-TLPAIVS-----YRLKSSRKSSDEACKN-TCLQV 88
           D++E  +D   F++++  + +++    +  I++     +  +S+++  ++A      + +
Sbjct: 46  DILEWRVD--HFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDL 103
Query: 89  LRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIAC 147
            R A+D   V+ ++++     D + + + Y+  +   ++ S  +    P  E++   +  
Sbjct: 104 NRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK 163
Query: 148 MQATGADVMKLEI----AVDSITDLAPVFEML-THCQVPLIALAVGSRGLISQLLGPKFG 202
           MQ  GAD+ K+ +      D +T L    EM   +   P+I +++   G+IS+L G  FG
Sbjct: 164 MQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFG 223
Query: 203 GFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
               +G++   S PG  ++  L+ V  + H
Sbjct: 224 SAATFGAVKKASAPGQISVADLRTVLTILH 253

>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2. Length = 276

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 36  DLVELCIDSMEFSHISEVDKLIQHP-TLPAIVS-----YRLKSSRKSSDEACKN-TCLQV 88
           D++E  +D   F++++  + +++    +  I++     +  +S+++  ++A      + +
Sbjct: 67  DILEWRVD--HFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDL 124
Query: 89  LRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIAC 147
            R A+D   V+ ++++     D + + + Y+  +   ++ S  +    P  E++   +  
Sbjct: 125 NRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK 184
Query: 148 MQATGADVMKLEI----AVDSITDLAPVFEMLT-HCQVPLIALAVGSRGLISQLLGPKFG 202
           MQ  GAD+ K+ +      D +T L    EM   +   P+I +++   G+IS+L G  FG
Sbjct: 185 MQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFG 244
Query: 203 GFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
               +G++   S PG  ++  L+ V  + H
Sbjct: 245 SAATFGAVKKASAPGQISVADLRTVLTILH 274

>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica 3- Dehydroquinate Dehydratase (arod) E86a Mutant Length = 276

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 36  DLVELCIDSMEFSHISEVDKLIQHP-TLPAIVS-----YRLKSSRKSSDEACKN-TCLQV 88
           D++E  +D   F++++  + +++    +  I++     +  +S++   ++A      + +
Sbjct: 67  DILEWRVD--HFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKAGGEQALTTGQYIDL 124
Query: 89  LRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIAC 147
            R A+D   V+ ++++     D + + + Y+  +   ++ S  +    P  E++   +  
Sbjct: 125 NRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK 184
Query: 148 MQATGADVMKLEI----AVDSITDLAPVFEMLT-HCQVPLIALAVGSRGLISQLLGPKFG 202
           MQ  GAD+ K+ +      D +T L    EM   +   P+I +++   G+IS+L G  FG
Sbjct: 185 MQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFG 244
Query: 203 GFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
               +G++   S PG  ++  L+ V  + H
Sbjct: 245 SAATFGAVKKASAPGQISVADLRTVLTILH 274

>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Non-Covalent Complex With Dehydroquinate. Length = 276

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 36  DLVELCIDSMEFSHISEVDKLIQHP-TLPAIVS-----YRLKSSRKSSDEACKN-TCLQV 88
           D++E  +D   F++++  + +++    +  I++     +  +S+++  ++A      + +
Sbjct: 67  DILEWRVD--HFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDL 124
Query: 89  LRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIAC 147
            R A+D   V+ ++++     D + + + Y+  +   ++ S  +    P  E++   +  
Sbjct: 125 NRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK 184
Query: 148 MQATGADVMKLEI----AVDSITDLAPVFEMLT-HCQVPLIALAVGSRGLISQLLGPKFG 202
           MQ  GAD+  + +      D +T L    EM   +   P+I +++   G+IS+L G  FG
Sbjct: 185 MQELGADIPMIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFG 244
Query: 203 GFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
               +G++   S PG  ++  L+ V  + H
Sbjct: 245 SAATFGAVKKASAPGQISVADLRTVLTILH 274

>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Clostridium Difficile With Covalent Reaction Intermediate Length = 258

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 109 DPLMSEIIY--SRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSIT 166
           D ++ E++    +   K+I+S++ +    P  E++   +  MQ  GAD+ K+ +   +  
Sbjct: 125 DEVIDEVVNFAHKKEVKVIISNH-DFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEK 183
Query: 167 DLAPVFEMLT-----HCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTL 221
           D+  + E        +   P+I +++   G+IS+L G  FG  L +G+    S PG  + 
Sbjct: 184 DVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISF 243
Query: 222 VSLKQVYQLEH 232
             L  V  L H
Sbjct: 244 KELNSVLNLLH 254

>pdb|1P74|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From Haemophilus Influenzae Length = 272

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 110/281 (39%), Gaps = 45/281 (16%)
Query: 239 IFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML--VDDVKEFFRTYSGTDFAGFSVGI 296
           ++ +  NP+  SK P++ N     T     Y+  L  +D  ++    +      G ++  
Sbjct: 3   LYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITS 62
Query: 297 PHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIE--DALRERQG 354
           P KE A    DE    AK   A NT +++  DGKL   NTD    ++ ++  + LR  Q 
Sbjct: 63  PFKERAYQLADEYSQRAKLAEACNT-LKKLDDGKLYADNTDGIGLVTDLQRLNWLRPNQH 121
Query: 355 --INGVASHTSPIAGKIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALAD---- 408
             I G    T  +   +                       +++ NR + + K LA+    
Sbjct: 122 VLILGAGGATKGVLLPLLQAQQ-----------------NIVLANRTFSKTKELAERFQP 164
Query: 409 -----AVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAV 463
                AVS +++  +           ++ NA++ G+   +  + V  E LK     +D  
Sbjct: 165 YGNIQAVSMDSIPLQTYD--------LVINATSAGLSGGT--ASVDAEILKLGSAFYDMQ 214
Query: 464 YTP-RNTRLLREAAEVGATVVS-GVEMFIRQALGQFRLFTG 502
           Y    +T  +     +G T VS G  M + QA   F L+ G
Sbjct: 215 YAKGTDTPFIALCKSLGLTNVSDGFGMLVAQAAHSFHLWRG 255

>pdb|1SFL|A Chain A, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, Apo Form Length = 238

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 108/235 (45%), Gaps = 26/235 (11%)
Query: 13  TQLECETTEEMQASIEQA-------KVEGADLVELCIDSMEFSHISEVDKLI-----QHP 60
           T +E   T   Q SIE+        +++  D++EL ID  E   + +V ++I        
Sbjct: 2   THVEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQD 61
Query: 61  TLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEIIYS- 118
           +   +V+YR K  +    +   ++ L ++    +++ ++ ++++++   D    + I + 
Sbjct: 62  SFKLLVTYRTKL-QGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITH 120
Query: 119 --RSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLT 176
             + N ++I+S + N    P  ++L  +   MQ    + +KL +   +  D+  + + ++
Sbjct: 121 LQQYNKEVIISHH-NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMS 179
Query: 177 ------HCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLK 225
                  C+V  + +++   GLIS+     FGG L YG +G    PG   +  LK
Sbjct: 180 TFSDTMDCKV--VGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLK 232

>pdb|1SFJ|A Chain A, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, With 3-Dehydroquinate Bound Length = 238

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 97/209 (46%), Gaps = 17/209 (8%)
Query: 31  KVEGADLVELCIDSMEFSHISEVDKLI-----QHPTLPAIVSYRLKSSRKSSDEACKNTC 85
           +++  D++EL ID  E   + +V ++I        +   +V+YR K  +    +   ++ 
Sbjct: 27  RIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKL-QGGYGQFTNDSY 85
Query: 86  LQVLRRALDLD-VEFVEMDYEVASDPLMSE--IIYSRSNTKIIVSSYLNGGGKPTTEKLG 142
           L ++    +++ ++ ++++++   D    +  I + +   K ++ S+ N    P  ++L 
Sbjct: 86  LNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQ 145
Query: 143 DVIACMQATGADVMKLEIAVDSITDLAPVFEMLT------HCQVPLIALAVGSRGLISQL 196
            +   MQ    + +KL +   +  D+  + + ++       C+V  + +++   GLIS+ 
Sbjct: 146 FIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VGISMSKLGLISRT 203
Query: 197 LGPKFGGFLVYGSLGGKSVPGLPTLVSLK 225
               FGG L YG +G    PG   +  LK
Sbjct: 204 AQGVFGGALTYGCIGEPQAPGQIDVTDLK 232

>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas Putida Length = 272

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 104/271 (38%), Gaps = 28/271 (10%)
Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEF------FRTYSGTDFAGFS 293
           + ++  P+ H+K P++H   F       +    +   + +F      FR+  G    G +
Sbjct: 5   YAVIGRPINHTKSPLIHG-LFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGK---GMN 60
Query: 294 VGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQ 353
           +  P K  A    D     A+   A N +  +  DG++V  N D    +  IE+ L E  
Sbjct: 61  ITAPFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEENLGE-- 116
Query: 354 GINGVASHTSPIAG-KIXXXXXXXXXXXXXXXXXKSRGARVIIFNRNYERAKALADAVSG 412
                     P+   ++                 ++  + ++I NR+  +A AL + +  
Sbjct: 117 ----------PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH 166
Query: 413 EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLL 472
             L          +   I+ NA++  +   +D  P+P + L    L ++  Y    T  L
Sbjct: 167 SRLRISRYEALEGQSFDIVVNATSASL--TADLPPLPADVLGEAALAYELAYGKGLTPFL 224
Query: 473 REAAEVG-ATVVSGVEMFIRQALGQFRLFTG 502
           R A E G A +  GV M + QA   F  + G
Sbjct: 225 RLAREQGQARLADGVGMLVEQAAEAFAWWRG 255

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	518
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	0.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	1e-105
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	1e-104
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	1e-103
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	1e-102
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	1e-100
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	3e-98
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	4e-97
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	2e-95
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	3e-93
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	2e-87
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	5e-80
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	7e-75
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	2e-68
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	1e-67
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	5e-66
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	2e-62
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	2e-38
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	1e-36
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	6e-36
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	2e-32
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	3e-32
3js3_A	258	3-dehydroquinate dehydratase; AROD, covalent react	3e-32
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	6e-31
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	7e-28
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	1e-11
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	2e-06
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	1e-05
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	1e-04
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	6e-04
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	6e-04
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	6e-04

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Length = 523

 Score =  543 bits (1400), Expect = 0.0
 Identities = 242/518 (46%), Positives = 343/518 (66%), Gaps = 9/518 (1%)

Query: 6   KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPA 64
           KN  L+C  +  ++ ++M     +A   GADLVE+ +D ++ F+ + ++  +I+   LP 
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61

Query: 65  IVSYRLKS--SRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNT 122
           + +YR K    +   DE        VLR A++L  ++++++ +VAS+ + S         
Sbjct: 62  LFTYRPKWEGGQYEGDEN---ERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKF 118

Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPL 182
           K+IVSS+ N    P+ E L  ++A +Q TGAD++K+      I D+A +F + +  QVP 
Sbjct: 119 KVIVSSH-NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPT 177

Query: 183 IALAVGSRGLISQLLGPKFGGFLVYGSL--GGKSVPGLPTLVSLKQVYQLEHINPDTKIF 240
           I L +G RGL+S++L  KFGG+L +G+L     S PG PT+  L  +Y    I PDTK++
Sbjct: 178 IGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVY 237

Query: 241 GLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKE 300
           G++  PV HSK PI+HN AF+   FNG+YV +LVD++  F + YS +DFAGFS  IPHKE
Sbjct: 238 GIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKE 297

Query: 301 PAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVAS 360
            A+ CCDEV PLAKSIGAVNTI+RR  DGKL+GYNTDC  +ISAIED LR     + V S
Sbjct: 298 AALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPS 357

Query: 361 HTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYL 420
            +SP+A K  V++GAGGAG+ALA+GAK +GA+V+I NR YERA  LA+A+ G+AL    L
Sbjct: 358 SSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDL 417

Query: 421 HEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGA 480
             + PE GM+LAN +++GM+PN +++P+ K+ALK Y LVFDAVYTPR TRLLREA E GA
Sbjct: 418 DNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGA 477

Query: 481 TVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
             VSG EMF+RQA  QF +FTG  AP++   +++ +  
Sbjct: 478 ITVSGSEMFVRQAYEQFEIFTGLPAPKELYWQIMSKYG 515

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* Length = 312

 Score =  317 bits (814), Expect = e-105
 Identities = 86/316 (27%), Positives = 137/316 (43%), Gaps = 30/316 (9%)

Query: 214 SVPGLPTLVSLKQVYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPML 273
           S        +L        +    ++ GL++ P+ HS  P + N A         Y+   
Sbjct: 8   SSGVDLGTENLYFQSNAMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFE 67

Query: 274 V--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKL 331
           V                  G  V +P+K+ A    DE+ P AK +GA+NTI+    DG L
Sbjct: 68  VDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYL 125

Query: 332 VGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA 391
            GYNTD    I AI+++  +             + GK  VL+GAGGA  A+   A   G 
Sbjct: 126 RGYNTDGTGHIRAIKESGFD-------------MRGKTMVLLGAGGAATAIGAQAAIEGI 172

Query: 392 -RVIIFNRN---YERAKALADAVSGEALHFEYLHEFFP--------EKGMILANASAIGM 439
             + +FNR    +E+A A A  V+        + +               IL N + +GM
Sbjct: 173 KEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGM 232

Query: 440 EPNSDQSPV-PKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFR 498
           +P  ++S +     L+   LV + VY P  T+LL++A + G   + G  M + Q   QF 
Sbjct: 233 KPLENESLIGDVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFE 292

Query: 499 LFTGGLAPEDFMRKLV 514
           L+TG   P D++++++
Sbjct: 293 LWTGKAFPLDYVKQVM 308

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Length = 287

 Score =  314 bits (806), Expect = e-104
 Identities = 105/295 (35%), Positives = 152/295 (51%), Gaps = 27/295 (9%)

Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFA 290
           IN  TK+ GL+ +PV HS  PI+HN AF+    N +YV   V  +++K            
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
           GF+V IPHK   +   DE+   A+ IGAVNTI     DGK +GYNTD   A  A+E+ + 
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEEIG 124

Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
                         +  K  V+ GAGGA RA+AF    +   +II NR  E+A+ALA  +
Sbjct: 125 R-------------VKDKNIVIYGAGGAARAVAFELA-KDNNIIIANRTVEKAEALAKEI 170

Query: 411 S-------GEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSP-VPKEALKAYELVFDA 462
           +       GE + F  L     +   I+ NA+ IGM PN D  P V  E L+   +V D 
Sbjct: 171 AEKLNKKFGEEVKFSGLDVD-LDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDL 229

Query: 463 VYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
           +Y P  T LL+EA +V A  ++G+ M I Q    F+++TG     + M+  ++++
Sbjct: 230 IYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDK 284

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* Length = 315

 Score =  310 bits (797), Expect = e-103
 Identities = 84/325 (25%), Positives = 149/325 (45%), Gaps = 31/325 (9%)

Query: 207 YGSLGGKSVPGLPTLVSLKQVYQ-LEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRF 265
           + S G           S     +  E I   T++ GL++ P+ HS  P +HN AF     
Sbjct: 6   HHSSGVDLGTENLYFQSNAMTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGL 65

Query: 266 NGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTII 323
           + +Y+   V   ++K+  + +   +  G++V +P+K       D++ P A+ +GAVNT++
Sbjct: 66  DYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVV 125

Query: 324 RRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALA 383
               DG L G+ TD    + A+++A  +             I GK   + GAGGA  A+ 
Sbjct: 126 ND--DGVLTGHITDGTGYMRALKEAGHD-------------IIGKKMTICGAGGAATAIC 170

Query: 384 FGAKSRGA-RVIIFNRN---YERAKALADAVSGEALHFEYLHEFFP--------EKGMIL 431
             A   G   + IFNR    Y  A+   + ++ +      L +            + +I 
Sbjct: 171 IQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF 230

Query: 432 ANASAIGMEPNSDQSPVP-KEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFI 490
            NA+ +GM+P   ++ +P  + L+   +V D VY P  TRLL  A E G   ++G+ M +
Sbjct: 231 TNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMML 290

Query: 491 RQALGQFRLFTGGLAPEDFMRKLVL 515
            Q    F ++T    P D++++++ 
Sbjct: 291 WQGAKAFEIWTHKEMPVDYIKEILF 315

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  307 bits (789), Expect = e-102
 Identities = 72/286 (25%), Positives = 125/286 (43%), Gaps = 27/286 (9%)

Query: 233 INPDTKI-FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAG 291
           IN DT++   L   P   + G   HN  +     N IY      D++   +        G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 292 FSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRE 351
            +V +P KE  +   DE+HP A++I +VNTI+    +G L  YNTD  + +  IE     
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117

Query: 352 RQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNYERAKALADAV 410
           +                  ++ G+GG  +A+    K+ G  ++ I+ RN +  + LA   
Sbjct: 118 K--------------NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 163

Query: 411 SGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV--PKEALKAYELVFDAVYTPRN 468
                 + Y++    ++  IL N ++IGM+   ++  +  PK  +    + FD V  P  
Sbjct: 164 G-----YAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVE 218

Query: 469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
           T  +R A   G   +SG  + + QA+ QF L+T     ++ + +  
Sbjct: 219 TPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAEAA 264

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Length = 297

 Score =  302 bits (777), Expect = e-100
 Identities = 95/290 (32%), Positives = 134/290 (46%), Gaps = 19/290 (6%)

Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFA 290
                K++GL+  PV HS  P++HN AF        Y    V    V            A
Sbjct: 19  QGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIA 78

Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
           G +V IPHK   +   DEV   A+ IGAVNTII    DG+LVGYNTD    +     AL 
Sbjct: 79  GVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYV----QALE 132

Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADA 409
           E   I         + GK  +++GAGG  R + F   S  A R+ + NR  E+A+ L   
Sbjct: 133 EEMNIT--------LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVRE 184

Query: 410 VSGEALHFEYLHEF--FPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR 467
                  +  L E      +  I+ N +++GM P  +  P+  E L+   +V D +Y P 
Sbjct: 185 GDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPL 244

Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
            T+ L+EA   GA V +GV M + Q    F  +TG     + M++LV+E 
Sbjct: 245 ETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVIEA 294

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275

 Score =  297 bits (762), Expect = 3e-98
 Identities = 77/293 (26%), Positives = 138/293 (47%), Gaps = 23/293 (7%)

Query: 228 YQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYS 285
           +    IN  T+++G++  PV HS  P+  N   R+   N +Y+   +  +++K+ F  + 
Sbjct: 3   HHHHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFK 62

Query: 286 GTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAI 345
                G +V +P KE  +   D V   AK IGAVNT+     +GK  GYNTD    + ++
Sbjct: 63  ALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSL 120

Query: 346 EDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKA 405
           +                  +  K  +++GAGGA RA+ +     GA+V ++NR  E+A  
Sbjct: 121 KS-------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIK 167

Query: 406 LADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYT 465
           LA     E +      E   +   ++ N +++G++   D      + +K   +V D +Y 
Sbjct: 168 LAQKFPLEVV--NSPEEVIDK-VQVIVNTTSVGLKDE-DPEIFNYDLIKKDHVVVDIIYK 223

Query: 466 PRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
              T+LL++A E GA ++ G+ M + Q +  F+++ G   P     + V +  
Sbjct: 224 E--TKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVPYSVAERSVRDLR 274

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* Length = 263

 Score =  293 bits (753), Expect = 4e-97
 Identities = 91/282 (32%), Positives = 129/282 (45%), Gaps = 25/282 (8%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVG 295
             F ++ +PV HS  P +H  A       G Y       + +    +      F G ++ 
Sbjct: 2   LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVR-RAFRGVNLT 60

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
           +P KE A+A  D V P A+ IGAVNT+++   +G+L G+NTD    + A++         
Sbjct: 61  LPLKEAALAHLDWVSPEAQRIGAVNTVLQV--EGRLFGFNTDAPGFLEALKA-------- 110

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
                   P+ G   VL GAGGAGRA+AF  +  G  V ++NR  +RA ALA+     A+
Sbjct: 111 -----GGIPLKGPALVL-GAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAV 164

Query: 416 HFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREA 475
             E   E       +L NA+ +G+E     SP+P E         D VY P  TR LREA
Sbjct: 165 PLEKAREA-----RLLVNATRVGLEDP-SASPLPAELFPEEGAAVDLVYRPLWTRFLREA 218

Query: 476 AEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
              G  V +G+ M   Q    FRL+TG L     M +     
Sbjct: 219 KAKGLKVQTGLPMLAWQGALAFRLWTGLLPDPSGMEEAARRA 260

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A Length = 283

 Score =  290 bits (744), Expect = 2e-95
 Identities = 75/295 (25%), Positives = 117/295 (39%), Gaps = 29/295 (9%)

Query: 236 DTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV-------DDVKEFFRTYSGTD 288
           D+ + GL+   +  S+ P +H           +Y  +          D+K          
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62

Query: 289 FAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDA 348
           F G ++  P+K+  +   DEV   A  +GAVNT++     G   G+NTD       +E+ 
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG 121

Query: 349 LRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALA 407
           L                     V VGAGG G A+A+   + G  ++ + + +  RA+ALA
Sbjct: 122 LPN-------------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168

Query: 408 DAVSGEALHFEYLH------EFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFD 461
           D ++        +       E        + NA+ +GM  +   +      L     V D
Sbjct: 169 DVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAH-PGTAFDVSCLTKDHWVGD 227

Query: 462 AVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE 516
            VY P  T LL+ A  +G   + G  M I QA+  FRLFTG       MR+  L 
Sbjct: 228 VVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLS 282

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Length = 282

 Score =  284 bits (730), Expect = 3e-93
 Identities = 73/284 (25%), Positives = 122/284 (42%), Gaps = 23/284 (8%)

Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFA 290
           ++ +T I+GL+   +GHS    +H   F      GIY    V  + +KE   T+      
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60

Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
           G +V IP+K   +    E+   A+ IGAVNT+        + G+NTD       +     
Sbjct: 61  GLNVTIPYKVEVMKELYEISEKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSKF-- 116

Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGAR-VIIFNRNYERAKALADA 409
               +         I   I V++G+GGA RA+    K   A+ + +  RN E+   +   
Sbjct: 117 ---RVE--------IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGE 165

Query: 410 VSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNT 469
              + + ++ L      KG ++ N +  GM P   +SPV KE +  +    D +Y P  T
Sbjct: 166 F--KVISYDELSNL---KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVET 220

Query: 470 RLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKL 513
             L+ A E G   V+G+ M + QA     ++      E  + ++
Sbjct: 221 LFLKYARESGVKAVNGLYMLVSQAAASEEIWNDISIDEIIVDEI 264

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* Length = 277

 Score =  269 bits (690), Expect = 2e-87
 Identities = 74/281 (26%), Positives = 134/281 (47%), Gaps = 22/281 (7%)

Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIP 297
           F ++ NP+ HS  P++H+  F+       Y  + V  +  ++  +  S     GF+V IP
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62

Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGING 357
           HKE  +   D+++  AKS+GAVNT++ +  DGK +GYNTD    ++ ++           
Sbjct: 63  HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQ---------- 110

Query: 358 VASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALH 416
                  I     +++GAGGA + +A          + + NR   R    +  ++   ++
Sbjct: 111 ---IYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN--KIN 165

Query: 417 FEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAA 476
             +      E   I+ N +  GM  N+D S +    L ++ LV D VY P  T +L EA 
Sbjct: 166 LSHAESHLDE-FDIIINTTPAGMNGNTD-SVISLNRLASHTLVSDIVYNPYKTPILIEAE 223

Query: 477 EVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
           + G  + +G++MF+ Q    F+++T        M+ +V+++
Sbjct: 224 QRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQK 264

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* Length = 269

 Score =  250 bits (640), Expect = 5e-80
 Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 31/287 (10%)

Query: 237 TKIFGLVSNPVGHSKGPILHNPAFR----HTRFNGIYVPMLVDDVKEFFRTYSGTDFAGF 292
            K FG+  NP+ HSK P++HN  F       RF G Y P+L+         +     +G 
Sbjct: 3   LKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGA 62

Query: 293 SVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRER 352
           +V +P KE A   CD++  +A   GAVNT++    + +LVGYNTD      +++      
Sbjct: 63  NVTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ----- 115

Query: 353 QGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG 412
                          +  +++GAGG+ +ALA   K +G +V + NR+          +  
Sbjct: 116 ------------KNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQR-LGC 162

Query: 413 EALHFEYLHEFFPEKGMILANASAIGMEPNSDQS-PVPKEALKAYELVFDAVYTPRNTRL 471
           +         F      ++ NA++  +      +  V K   K  +L +D  Y    T  
Sbjct: 163 DCFMEPPKSAF-----DLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFL-TPF 216

Query: 472 LREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQF 518
           L  A E+      G +M I QA   F  F+    P     +++   F
Sbjct: 217 LSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF 263

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} Length = 253

 Score =  236 bits (604), Expect = 7e-75
 Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 36/282 (12%)

Query: 240 FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIP 297
           F ++  PV HS  P L+N  F+    N  Y    +  +      R     ++ GF+  IP
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRIL-EEYDGFNATIP 61

Query: 298 HKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGING 357
           HKE  +   +     A+ I AVN + R        GYNTD    + ++E           
Sbjct: 62  HKERVMRYVEPS-EDAQRIKAVNCVFR------GKGYNTDWVGVVKSLEGV--------- 105

Query: 358 VASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALH 416
                  +   + V+ GAGGA RA+ +     G   + + NR  ERAKAL   V  +   
Sbjct: 106 ------EVKEPVVVV-GAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV--KIFS 156

Query: 417 FEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAA 476
            + L E   +    L N +++GM+   ++ PV  ++LK   LV+D +Y    T L+ +A 
Sbjct: 157 LDQLDEVVKK-AKSLFNTTSVGMKG--EELPVSDDSLKNLSLVYDVIYFD--TPLVVKAR 211

Query: 477 EVGAT-VVSGVEMFIRQALGQFRLFTGGLAP-EDFMRKLVLE 516
           ++G   ++ G  MF  QA+   +++          +   VL+
Sbjct: 212 KLGVKHIIKGNLMFYYQAMENLKIWGIYDEEVFKEVFGEVLK 253

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  220 bits (562), Expect = 2e-68
 Identities = 73/284 (25%), Positives = 118/284 (41%), Gaps = 20/284 (7%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVG 295
           + + +  NP+ HSK P +H    +       Y  +L   +D       +      G +V 
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
           +P KE A A  DE+   A   GAVNT++R   DG+L+G NTD    +S +E         
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLER-------- 112

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA- 414
                 +    G   +L+GAGGA R +     S    V I NR   RA+ LA   +    
Sbjct: 113 -----LSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGS 167

Query: 415 LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLRE 474
           +    + E    +  ++ NA++ G+    D   +P   +      +D  Y    T  L  
Sbjct: 168 IQALSMDELEGHEFDLIINATSSGISG--DIPAIPSSLIHPGIYCYDMFYQKGKTPFLAW 225

Query: 475 AAEVGATVVS-GVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
             + G+   + G+ M + QA   F L+ G L   + + K + E+
Sbjct: 226 CEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEE 269

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* Length = 281

 Score =  218 bits (557), Expect = 1e-67
 Identities = 63/290 (21%), Positives = 121/290 (41%), Gaps = 22/290 (7%)

Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFA 290
           +      + +  NP+ HSK P +H    R T+ + IY    V  D   E  + +      
Sbjct: 4   MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 63

Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALR 350
           G +V +P KE A    D +   A+  GAVNT+ +   DG+++G NTD E  +  +     
Sbjct: 64  GCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLA--- 119

Query: 351 ERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNYERAKALADA 409
                         + G   +L+GAGGA R +      +  A + + NR + +A+ LA+ 
Sbjct: 120 ----------QQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAEL 169

Query: 410 VSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN 468
           V+    +  +   +      +I+ N+++  ++   +   +      +  + +D +Y    
Sbjct: 170 VAAYGEVKAQAFEQLKQSYDVII-NSTSASLDG--ELPAIDPVIFSSRSVCYDMMYGKGY 226

Query: 469 TRLLREAAEVGAT-VVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
           T   + A + G    + G+ M + QA   F L+ G       + + + + 
Sbjct: 227 TVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKN 276

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} Length = 272

 Score =  213 bits (546), Expect = 5e-66
 Identities = 63/285 (22%), Positives = 109/285 (38%), Gaps = 20/285 (7%)

Query: 237 TKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSV 294
           +  + ++  P+ H+K P++H    + +     Y  +    DD +     +      G ++
Sbjct: 2   SDRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNI 61

Query: 295 GIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQG 354
             P K  A    D     A+   A N +     DG++V  N D    +  IE+ L E   
Sbjct: 62  TAPFKLRAFELADRRSERAQLARAANALKFE--DGRIVAENFDGIGLLRDIEENLGE--- 116

Query: 355 INGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNYERAKALADAVSGE 413
                    P+  +  +L+GAGGA R         G + ++I NR+  +A AL + +   
Sbjct: 117 ---------PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHS 167

Query: 414 ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLR 473
            L          +   I+ NA++  +    D  P+P + L    L ++  Y    T  LR
Sbjct: 168 RLRISRYEALEGQSFDIVVNATSASLTA--DLPPLPADVLGEAALAYELAYGKGLTPFLR 225

Query: 474 EAAEVGA-TVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
            A E G   +  GV M + QA   F  + G       +   +   
Sbjct: 226 LAREQGQARLADGVGMLVEQAAEAFAWWRGVRPDTRAVINQLTIP 270

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* Length = 272

 Score =  204 bits (522), Expect = 2e-62
 Identities = 58/285 (20%), Positives = 108/285 (37%), Gaps = 21/285 (7%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVG 295
            ++ +  NP+  SK P++ N     T     Y+  L   D  ++    +      G ++ 
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGI 355
            P KE A    DE    AK   A NT+ +   DGKL   NTD    ++ ++         
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNTDGIGLVTDLQR-------- 112

Query: 356 NGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA- 414
                       +  +++GAGGA + +          +++ NR + + K LA+       
Sbjct: 113 -----LNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGN 167

Query: 415 LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYT-PRNTRLLR 473
           +    +     +   ++ NA++ G+      + V  E LK     +D  Y    +T  + 
Sbjct: 168 IQAVSMDSIPLQTYDLVINATSAGLSG--GTASVDAEILKLGSAFYDMQYAKGTDTPFIA 225

Query: 474 EAAEVGA-TVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
               +G   V  G  M + QA   F L+ G +     + + + + 
Sbjct: 226 LCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMPDFVSVYEQLKKA 270

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A Length = 219

 Score =  139 bits (351), Expect = 2e-38
 Identities = 46/230 (20%), Positives = 95/230 (41%), Gaps = 19/230 (8%)

Query: 9   LLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQH---PTLPAI 65
           +L+   L+     E    +++AK +GAD+VEL +D    + ++ V + ++      L  I
Sbjct: 1   MLIAVPLDDTNFSEN---LKKAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTI 57

Query: 66  VSYRLKS---SRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNT 122
           ++ R          + E         L   L    ++ +++       +    I   +  
Sbjct: 58  LTIRSPEEGGREVKNREE--------LFEELSPLSDYTDIELSSRGLLVKLYNITKEAGK 109

Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPL 182
           K+I+S + N    P    + +V+      G  + K+ +  +S  D+A +  +    +   
Sbjct: 110 KLIISYH-NFELTPPNWIIREVLREGYRYG-GIPKIAVKANSYEDVARLLCISRQVEGEK 167

Query: 183 IALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
           I +++G  G IS+L G  FG  + Y SL     PG   L  + ++ +  +
Sbjct: 168 ILISMGDYGKISRLAGYVFGSVITYCSLEKAFAPGQIPLEEMVELRKKFY 217

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* Length = 238

 Score =  135 bits (340), Expect = 1e-36
 Identities = 46/237 (19%), Positives = 98/237 (41%), Gaps = 13/237 (5%)

Query: 6   KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQ-----HP 60
            +  +V T     + EE        +++  D++EL ID  E   + +V ++I        
Sbjct: 2   THVEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQD 61

Query: 61  TLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYS-- 118
           +   +V+YR K           +    +   A    ++ ++++++   D    + I +  
Sbjct: 62  SFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHL 121

Query: 119 -RSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTH 177
            + N ++I+S + N    P  ++L  +   MQ    + +KL +   +  D+  + + ++ 
Sbjct: 122 QQYNKEVIISHH-NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMST 180

Query: 178 C----QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQL 230
                   ++ +++   GLIS+     FGG L YG +G    PG   +  LK    L
Sbjct: 181 FSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL 237

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  133 bits (336), Expect = 6e-36
 Identities = 38/237 (16%), Positives = 83/237 (35%), Gaps = 12/237 (5%)

Query: 10  LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME----FSHISEVDKLIQ--HPTLP 63
            +C  +  E   ++    E+   +  DL+E   D          +      ++     +P
Sbjct: 21  CICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIP 80

Query: 64  AIVSYRLKSSRKSSDEACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNT 122
            + + R +          +    +++        ++ V+ +            +    + 
Sbjct: 81  ILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECSV 140

Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVF----EMLTHC 178
            ++VS +    G P  E L   +   +  GAD+ K+ +   S  D+  +     E     
Sbjct: 141 WLVVSRH-YFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARREL 199

Query: 179 QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINP 235
            +PLI +A+G  G I++L G  FG  + +      S PG   +  ++ V  +     
Sbjct: 200 AIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSILQTYS 256

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans} Length = 259

 Score =  124 bits (311), Expect = 2e-32
 Identities = 37/236 (15%), Positives = 95/236 (40%), Gaps = 15/236 (6%)

Query: 6   KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLI--QHPTLP 63
           + S+ +   +  +  EE    ++  +++  D++E   D +    I  V   I  +     
Sbjct: 32  RGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSGHE 90

Query: 64  AIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTK 123
            I + R +    +   + ++    +   A     ++++ +Y    D ++ E+      + 
Sbjct: 91  VIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRD-VLEEM---YDFSN 146

Query: 124 IIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEML-----THC 178
           +I+S +     + T E L +V + + A    V+K+ +   +  D+  +          + 
Sbjct: 147 LILSYH---NFEETPENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLNP 203

Query: 179 QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHIN 234
               + +++   G IS+L     G    + SL  +S PG  +L  ++++ ++   N
Sbjct: 204 NQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQESAPGQISLADMRKIKEVLDAN 259

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1} Length = 231

 Score =  122 bits (308), Expect = 3e-32
 Identities = 40/237 (16%), Positives = 88/237 (37%), Gaps = 17/237 (7%)

Query: 7   NSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLI--QHPTLPA 64
           N++ +   +     +E QA I+ +K E  +L+E   D +    I  V   I  +      
Sbjct: 2   NAMRIVAPVMPRHFDEAQA-IDISKYEDVNLIEWRADFLPKDEIVAVAPAIFEKFAGKEI 60

Query: 65  IVSYRLKSSRKSSDEACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTK 123
           I + R       +        + +++    +   ++++ +Y          +        
Sbjct: 61  IFTLRTVQEG-GNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEML----DFPN 115

Query: 124 IIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEML-----THC 178
           +I+S +       T E L +  + M      V+K+ +   S  D+  +          + 
Sbjct: 116 LILSYHNFEE---TPENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNP 172

Query: 179 QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHINP 235
           +     +++G  G +S+  G   G    Y SL   S PG  TL  +K++ ++  ++ 
Sbjct: 173 EQEFATISMGKLGRLSRFAGDVIGSSWTYVSLDHVSGPGQVTLNDMKRIIEVLEMDI 229

>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile} Length = 258

 Score =  123 bits (310), Expect = 3e-32
 Identities = 43/237 (18%), Positives = 100/237 (42%), Gaps = 13/237 (5%)

Query: 10  LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQH-----PTLP 63
            +C  +  +  +++    ++ K    D++E  +D  E   +I EV +++         +P
Sbjct: 21  KICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIP 80

Query: 64  AIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSR-SNT 122
            + ++R          +           +    V+ ++++  +  + +   + ++     
Sbjct: 81  LLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEV 140

Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEML-----TH 177
           K+I+S++ +    P  E++   +  MQ  GAD+ K+ +   +  D+  + E        +
Sbjct: 141 KVIISNH-DFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIY 199

Query: 178 CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHIN 234
              P+I +++   G+IS+L G  FG  L +G+    S PG  +   L  V  L H +
Sbjct: 200 ADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLHKS 256

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A 1l9w_A* 1qfe_A* Length = 276

 Score =  120 bits (301), Expect = 6e-31
 Identities = 41/238 (17%), Positives = 96/238 (40%), Gaps = 19/238 (7%)

Query: 10  LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME----FSHISEVDKLI--QHPTLP 63
            +   L  +T  ++++     +    D++E  +D          + E    I       P
Sbjct: 41  KIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKP 100

Query: 64  AIVSYRLKS---SRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSR- 119
            + ++R       +  +     +     +   L   V+ ++++     D + + + Y+  
Sbjct: 101 LLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGL---VDMIDLELFTGDDEVKATVGYAHQ 157

Query: 120 SNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLT--- 176
            N  +I+S++ +    P  E++   +  MQ  GAD+ K+ +   +  D+  +        
Sbjct: 158 HNVAVIMSNH-DFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQ 216

Query: 177 --HCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
             +   P+I +++   G+IS+L G  FG    +G++   S PG  ++  L+ V  + H
Sbjct: 217 ERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTILH 274

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus} Length = 196

 Score =  109 bits (274), Expect = 7e-28
 Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 28/207 (13%)

Query: 28  EQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKS---SRKSSDEACKNT 84
           E    E AD+VEL ID  +FS                I++ R  S     +  +      
Sbjct: 12  ELELAEKADVVELRIDLFDFSGAR--------VDKEKILTCRRVSDGGKFEGDERER--- 60

Query: 85  CLQVLRRALD-LDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGD 143
            ++ ++RA D L+ ++V+++ ++              N +II S + N    P   +L  
Sbjct: 61  -IEKMKRAFDSLNPDYVDLESDLPDS-------AFDFNCRIIESYH-NFIRTPDYSELKG 111

Query: 144 VIACMQATGADVMKLEIAVDSITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGG 203
           +   ++    D++K+     S  D+  +  +LT+    ++A  +G R   +++L    G 
Sbjct: 112 I---VEGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGERFSFTRVLAAYLGS 167

Query: 204 FLVYGSLGGKSVPGLPTLVSLKQVYQL 230
             +Y  +G    PG  +L   +++   
Sbjct: 168 PFIYCYVGSPKAPGQISLDDAREIISR 194

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Length = 144

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 16/108 (14%)

Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFF 424
             G   +LVG G     +A        +V +  RN +  +A A+    E +    +    
Sbjct: 19  NGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLI 78

Query: 425 PEKGMILANASAIGMEPNSDQSPVP---KEALKAYELVFD-AVYTPRN 468
               +I+   +A         S  P   + +L   +L  D     P N
Sbjct: 79  KNNDVII---TATS-------SKTPIVEERSLMPGKLFIDLGN--PPN 114

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 Length = 404

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 363 SPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEYLH 421
             +  K  ++VGAG  G+ +A     RG   V++ NR YERA  LA  + GEA+ F+ L 
Sbjct: 163 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELV 222

Query: 422 EFFPE 426
           +    
Sbjct: 223 DHLAR 227

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 344 AIEDALRERQGINGVASHTSP--IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE 401
           AI +++   +G   +A   +   I G    ++G G  G ++A    + GA+V +  R  +
Sbjct: 130 AIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESD 189

Query: 402 RAKALADAVSGEALHFEYLHEFFPE 426
              A    +  E  H     +   +
Sbjct: 190 L-LARIAEMGMEPFHISKAAQELRD 213

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
           ++    ++ GAG G GRAL  G   RG +V +  R Y+R +     +    +
Sbjct: 1   MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVI 52

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 365 IAGKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
           +  ++F++ G + G G A+       GA V+  +      +  A  +        
Sbjct: 5   LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRN 59

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 365 IAGKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
             G   ++ G AGG G A      + G  V+I +   E+ KALAD +   A    
Sbjct: 28  FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVS 82

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 365 IAGKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL 415
           + G + V+ G A G G A A     +GA  ++ +      +A A  +    +
Sbjct: 10  VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCV 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	518
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	100.0
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	100.0
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	100.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	100.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	100.0
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	100.0
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	100.0
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	100.0
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	100.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	100.0
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	100.0
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	100.0
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	100.0
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	100.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	100.0
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	100.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	100.0
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	100.0
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	100.0
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	100.0
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	100.0
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	100.0
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	100.0
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	100.0
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	100.0
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	100.0
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	100.0
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	100.0
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.72
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.48
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	99.47
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	99.45
3l07_A	285	Bifunctional protein fold; structural genomics, ID	99.45
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	99.42
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	99.41
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.27
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	99.22
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	99.19
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	99.17
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	99.15
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.11
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	99.01
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.94
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.77
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.47
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.46
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.45
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.42
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.36
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.32
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.3
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.23
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	98.2
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.19
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.13
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.97
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.96
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.93
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.9
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.85
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	97.82
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.81
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.81
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.8
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.79
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.74
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.74
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.73
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.72
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.71
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.68
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.67
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.66
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.65
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.64
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.62
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.61
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.61
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.56
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.52
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.52
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.52
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.51
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.51
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.5
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.5
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.49
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.49
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.49
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.48
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.48
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.47
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.46
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.46
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.44
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.44
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.43
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.42
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.42
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.42
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	97.42
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.41
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.41
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.4
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.4
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.39
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.39
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	97.35
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.35
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.35
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	97.34
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.33
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.33
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	97.33
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.33
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.31
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.3
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	97.3
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.3
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	97.29
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.29
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.29
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.29
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.28
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.28
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	97.27
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	97.26
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.26
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	97.26
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.26
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	97.25
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.25
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.24
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.23
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.22
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.22
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.22
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.21
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.21
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.21
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.21
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	97.2
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.2
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	97.2
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.2
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.19
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.19
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.19
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.18
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.18
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.17
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.17
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.16
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.16
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	97.16
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.15
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.14
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.14
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.14
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.13
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.12
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.12
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.11
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.11
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.09
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	97.08
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.08
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	97.08
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.08
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.08
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.08
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.07
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.06
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.06
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.06
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	97.05
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.03
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.03
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.02
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.02
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.01
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	97.01
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.0
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.0
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.98
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.98
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.98
1spx_A	278	Short-chain reductase family member (5L265); paral	96.97
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.96
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	96.95
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.94
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.94
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.94
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.94
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.93
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.92
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.92
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.92
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.91
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.91
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.91
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.9
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.9
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.88
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.87
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.87
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.86
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.85
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.84
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.84
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.83
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.83
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.83
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.81
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.81
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	96.81
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.8
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.78
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.77
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.76
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.76
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.74
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.74
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.74
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.73
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.73
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.73
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.72
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.72
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.72
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.72
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.72
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.7
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.69
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.69
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.69
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.68
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.68
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	96.67
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.67
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.67
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.67
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.66
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.66
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.65
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.65
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.64
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.64
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.63
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.63
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.63
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.62
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.62
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.62
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.62
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.61
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.61
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.61
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.61
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.6
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.6
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.6
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.59
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.59
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.59
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.58
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.58
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.57
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.57
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.57
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.56
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.56
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.56
4had_A	350	Probable oxidoreductase protein; structural genomi	96.55
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.55
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.55
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.55
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.55
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.54
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.54
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.53
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.53
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.53
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.53
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.52
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.52
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.52
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.52
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.51
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.51
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.51
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.51
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.51
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.51
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.5
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.5
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.5
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.5
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.49
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.48
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.47
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.48
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	96.46
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.45
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.45
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.45
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.44
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.44
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.44
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.44
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.44
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.43
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.43
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.43
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.42
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.42
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.42
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.41
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.41
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	96.41
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.4
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.4
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.4
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.4
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.38
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	96.38
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.38
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.38
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.37
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.37
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.37
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.37
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.35
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.35
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.35
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.35
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.34
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.34
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.33
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.33
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.33
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.33
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.32
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.32
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.31
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.3
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.3
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.3
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.3
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.29
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.28
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.28
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.28
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.27
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.27
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.26
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.26
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.25
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	96.24
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.23
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.23
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.23
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.22
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.21
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.21
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.2
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.2
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.18
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.17
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.17
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.15
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.14
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.13
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.13
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.13
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.12
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.12
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.11
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.1
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.1
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.09
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.07
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.07
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.06
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.05
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	96.04
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.04
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.03
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.03
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	96.03
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.03
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.03
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.02
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.01
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.0
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.0
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.0
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.0
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	95.99
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.98
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	95.96
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	95.96
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.95
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	95.95
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.94
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.94
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	95.93
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.92
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	95.92
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.92
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	95.91
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	95.91
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	95.91
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	95.9
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.89
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.88
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.88
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	95.87
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.86
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.85
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.85
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.84
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	95.84
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	95.82
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.82
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.82
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.81
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.8
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.8
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.78
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	95.76
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.75
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.74
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.73
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.72
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.72
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	95.71
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.71
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.66
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.65
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	95.65
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.65
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.64
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	95.64
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.63
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	95.62
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	95.61
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.61
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.61
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.6
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.59
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	95.56
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.56
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.56
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.56
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	95.55
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.55
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.52
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.51
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	95.51
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	95.5
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.5
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.49
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.48
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	95.47
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.46
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.45
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.45
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.45
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	95.44
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.43
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	95.43
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.42
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	95.4
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.39
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.39
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	95.36
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.35
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	95.34
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.34
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.34
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	95.34
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.33
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.32
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	95.32
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.32
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.32
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.3
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.3
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.29
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.29
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.29
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.28
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.27
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.25
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.25
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.23
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.21
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.18
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.18

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=100.00  E-value=3.9e-112  Score=921.87  Aligned_cols=509  Identities=47%  Similarity=0.814  Sum_probs=449.3

Q ss_pred             cCCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHH
Q 010101            6 KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNT   84 (518)
Q Consensus         6 ~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   84 (518)
                      +++|+||+||+++|.++++.+++++.+.|+|+||||+|+|. +++.+++..+++..++|+|||+|+++|||.|+++ +++
T Consensus         2 ~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRvD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~-~~~   80 (523)
T 2o7s_A            2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGD-ENE   80 (523)
T ss_dssp             CSCCEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEEGGGCSSCCHHHHHHHHHHHCSSCEEEECCBGGGTSSBCSC-HHH
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHHhhhcCCCEEEEEEecccccChHHHHHHHHhcCCCcEEEEecccccCCCCCCC-HHH
Confidence            67899999999999999999999888899999999999998 6656688888888899999999999999999999 999


Q ss_pred             HHHHHHHHhhcCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccCC
Q 010101           85 CLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDS  164 (518)
Q Consensus        85 ~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~~  164 (518)
                      |+++|+.++++|++|||||++.+++.++.+...+..++|||+||||| ++||++++|.++|++|.++||||+|||+||++
T Consensus        81 ~~~ll~~~~~~~~~yiDvEl~~~~~~~~~~~~~~~~~~kiI~S~H~f-~~tp~~~~~~~~~~~~~~~gaDivKia~~a~~  159 (523)
T 2o7s_A           81 RRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSHNY-QNTPSVEDLDGLVARIQQTGADIVKIATTAVD  159 (523)
T ss_dssp             HHHHHHHHHHHTCSEEEEEHHHHHHHHHHTTTCCCTTCEEEEEEECS-SCCCCHHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred             HHHHHHHHHHhCCCEEEEECCCchHHHHHHHHhccCCCEEEEEcccC-CCCcCHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence            99999999999999999999998877777765444589999999999 99999999999999999999999999999999


Q ss_pred             cccHHHHHHHhccCCCCEEEEecCCccchhhhcCCCCCCcccccccCCC--CCCCCCCHHHHHHHhhhccCCCCceEEEE
Q 010101          165 ITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGK--SVPGLPTLVSLKQVYQLEHINPDTKIFGL  242 (518)
Q Consensus       165 ~~D~~~l~~~~~~~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~--sApGQ~~~~~l~~~~~~~~~~~~t~~~~l  242 (518)
                      .+|+++|++++.+.++|+|+|+||+.|++||+++++|||++||++++.+  +||||+++++++++|++.+++++|++|||
T Consensus       160 ~~D~~~l~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lt~~~l~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~~~~v  239 (523)
T 2o7s_A          160 IADVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGI  239 (523)
T ss_dssp             GGGHHHHHHHHHHCSSCEEEEEESGGGTHHHHCTTTTTCSEEECBSSTTCCSSTTCCBHHHHHHTSCGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHHHhhcCCCEEEEEcCCCCchhhhhhhhcCCceeecCCCccccCCCCCCcHHHHHHHHhhhhccccceEEEE
Confidence            9999999999988889999999999999999999999999999999866  99999999999999999999999999999


Q ss_pred             ecCCCCcccCHHHHHHHHHHcCCCceEEecccCcHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhhhcCceeEE
Q 010101          243 VSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTI  322 (518)
Q Consensus       243 iG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi  322 (518)
                      ||+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||++|++|+|++++.|+.+||||||
T Consensus       240 iG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~ld~~~~~A~~iGAvNti  319 (523)
T 2o7s_A          240 IGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTI  319 (523)
T ss_dssp             EESSCTTCCHHHHHHHHHHHTTCSEEEEEEECSCHHHHHHHTCSTTEEEEEECTTCHHHHHHHCSEECHHHHHHTCCSEE
T ss_pred             ECCCccCCccHHHHHHHHHHcCCCcEEEeEEcchHHHHHHHHhcCCCCEEEECCCCHHHHHHHhcccCHHHHHhCCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          323 IRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       323 ~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      +++..+|+|+||||||.||+.+|+..+...++.+........+++++++|+|+||+|++++++|++.|++|+++||+.++
T Consensus       320 ~~~~~~gk~~g~nTD~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~  399 (523)
T 2o7s_A          320 LRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYER  399 (523)
T ss_dssp             EECTTTCCEEEECCHHHHHHHHHHHHC-------------------CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHH
T ss_pred             EEecCCCeEEEEcCCHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            98622689999999999999999764321100000000012467899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCee
Q 010101          403 AKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV  482 (518)
Q Consensus       403 a~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~  482 (518)
                      ++++++.++.....++++..+.....|++||+|++||.|..+..+++...+.....++|++|.|..|+|+++|+++||.+
T Consensus       400 a~~la~~~~~~~~~~~dl~~~~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a~~~G~~~  479 (523)
T 2o7s_A          400 ALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAIT  479 (523)
T ss_dssp             HHHHHHHTTC-CEETTTTTTC--CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHHHTTTCEE
T ss_pred             HHHHHHHcCCceeeHHHhhhccccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHHHHCCCEE
Confidence            99999998755445555543223457999999999987754444565555666688999999999999999999999999


Q ss_pred             eccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          483 VSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       483 i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      ++|++||++||+.||++|||.++|.+.|++++.+
T Consensus       480 i~Gl~mlv~Qa~~~f~lwtg~~~~~~~~~~~~~~  513 (523)
T 2o7s_A          480 VSGSEMFVRQAYEQFEIFTGLPAPKELYWQIMSK  513 (523)
T ss_dssp             ECHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred             ECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999997754

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.8e-70  Score=547.44  Aligned_cols=263  Identities=28%  Similarity=0.420  Sum_probs=243.0

Q ss_pred             CCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccCh
Q 010101          234 NPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHP  311 (518)
Q Consensus       234 ~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~  311 (518)
                      +.+|++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||||||+++++|+|++|+
T Consensus         2 s~~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~v~~l~~~~~~G~nVTiP~K~~v~~~ld~ls~   81 (282)
T 3fbt_A            2 SLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCGGLNVTIPYKVEVMKELYEISE   81 (282)
T ss_dssp             -CCCEEEEEEESSCCCCHHHHHHHHHHHHHTCCEEEEEEECCGGGHHHHHHHHHHTTCCEEEECTTCTTGGGGGCSEECH
T ss_pred             CCcceEEEEECCCccccchHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhcCH
Confidence            46799999999999999999999999999999999999998  5799999999889999999999999999999999999


Q ss_pred             hhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC
Q 010101          312 LAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA  391 (518)
Q Consensus       312 ~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~  391 (518)
                      .|+.+||||||+++  +|+|+||||||.||+.+|++.     +        .++++++++|+|+||+||+++++|.+.|+
T Consensus        82 ~A~~iGAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~-----~--------~~~~~k~vlvlGaGGaaraia~~L~~~G~  146 (282)
T 3fbt_A           82 KARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSKF-----R--------VEIKNNICVVLGSGGAARAVLQYLKDNFA  146 (282)
T ss_dssp             HHHHHTCCCEEEEC--SSCEEEECCHHHHHHHHHHHT-----T--------CCCTTSEEEEECSSTTHHHHHHHHHHTTC
T ss_pred             HHHHcCCcceEEee--CCEEEeeCCcHHHHHHHHHHc-----C--------CCccCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            99999999999998  899999999999999998641     2        46789999999999999999999999999


Q ss_pred             -eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchH
Q 010101          392 -RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTR  470 (518)
Q Consensus       392 -~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~  470 (518)
                       +|+|+|||.+++++|++.++  ..+++++.+  + ++|+||||||+||.|..++.|++.+.+++..+|+|++|+|.+|+
T Consensus       147 ~~v~v~nRt~~ka~~La~~~~--~~~~~~l~~--l-~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~  221 (282)
T 3fbt_A          147 KDIYVVTRNPEKTSEIYGEFK--VISYDELSN--L-KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVETL  221 (282)
T ss_dssp             SEEEEEESCHHHHHHHCTTSE--EEEHHHHTT--C-CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSSSSCH
T ss_pred             CEEEEEeCCHHHHHHHHHhcC--cccHHHHHh--c-cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCCCCCH
Confidence             99999999999999998764  345666654  3 79999999999999876667888889999999999999999999


Q ss_pred             HHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          471 LLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       471 ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      |+++|+++||++++|++||++||++||++|||+++|.+.|++++.+
T Consensus       222 ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~~~~  267 (282)
T 3fbt_A          222 FLKYARESGVKAVNGLYMLVSQAAASEEIWNDISIDEIIVDEIFEV  267 (282)
T ss_dssp             HHHHHHHTTCEEECSHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHCcCeEeCcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=100.00  E-value=3.3e-70  Score=552.95  Aligned_cols=267  Identities=32%  Similarity=0.538  Sum_probs=237.2

Q ss_pred             ccCCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccc
Q 010101          231 EHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDE  308 (518)
Q Consensus       231 ~~~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~  308 (518)
                      ..++++|++|||||+||+||+||.|||++|+++|+|++|.++++  ++++++++.++.++|.|+|||||||++|++|+|+
T Consensus        25 ~~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~  104 (312)
T 3t4e_A           25 MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDE  104 (312)
T ss_dssp             -----CCEEEEEEESCCTTCSHHHHHHHHHHHHTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSHHHHGGGCSE
T ss_pred             cccCCCceEEEEECCCccccccHHHHHHHHHHcCCCcEEEeEecCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHhhh
Confidence            35788899999999999999999999999999999999999998  4899999999989999999999999999999999


Q ss_pred             cChhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHH
Q 010101          309 VHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKS  388 (518)
Q Consensus       309 ~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~  388 (518)
                      +|+.|+.+||||||+++  +|+|+||||||.||+.+|++.     +        ..+++++++|+|+||+||+++++|.+
T Consensus       105 ls~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-----~--------~~l~gk~~lVlGAGGaaraia~~L~~  169 (312)
T 3t4e_A          105 LTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-----G--------FDMRGKTMVLLGAGGAATAIGAQAAI  169 (312)
T ss_dssp             ECHHHHHHTCCSEEEEE--TTEEEEECHHHHHHHHHHHHT-----T--------CCCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             cCHHHHHhCceeEEEec--CCEEEEeCCcHHHHHHHHHhc-----C--------CCcCCCEEEEECcCHHHHHHHHHHHH
Confidence            99999999999999987  899999999999999998641     2        56789999999999999999999999


Q ss_pred             CCC-eEEEEeCC---HHHHHHHHHHhcCc------ccccccc---cccCCCCccEEEEcCCCCCCCCCCCCCC--Chhhh
Q 010101          389 RGA-RVIIFNRN---YERAKALADAVSGE------ALHFEYL---HEFFPEKGMILANASAIGMEPNSDQSPV--PKEAL  453 (518)
Q Consensus       389 ~G~-~v~i~nRt---~~ka~~la~~~~~~------~~~~~~l---~~~~~~~~divInatp~g~~~~~~~~~~--~~~~l  453 (518)
                      .|+ +|+|+||+   .+++++++++++..      ..+++++   .+ .+.++|+||||||+||.|. +..|+  +.+.+
T Consensus       170 ~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~-~l~~~DiIINaTp~Gm~~~-~~~~~~~~~~~l  247 (312)
T 3t4e_A          170 EGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTE-ALASADILTNGTKVGMKPL-ENESLIGDVSLL  247 (312)
T ss_dssp             TTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH-HHHHCSEEEECSSTTSTTS-TTCCSCCCGGGS
T ss_pred             cCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHh-hccCceEEEECCcCCCCCC-CCCcccCCHHHc
Confidence            999 99999999   99999999887531      2233332   11 2346899999999999875 33444  66788


Q ss_pred             cCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010101          454 KAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV  514 (518)
Q Consensus       454 ~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~  514 (518)
                      ++..+|+|++|+|.+|+|+++|+++||++++|++||++||++||++|||+++|.+.|++++
T Consensus       248 ~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~af~lwtg~~~~~~~~~~~l  308 (312)
T 3t4e_A          248 RPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVM  308 (312)
T ss_dssp             CTTCEEEECCCSSSSCHHHHHHHHTTCEEECHHHHHHHHHHHHHHHHHSSCCCHHHHHHHT
T ss_pred             CCCCEEEEeccCCCCCHHHHHHHHCCCeEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence            8999999999999999999999999999999999999999999999999999999999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=100.00  E-value=3.6e-70  Score=547.27  Aligned_cols=265  Identities=28%  Similarity=0.398  Sum_probs=240.0

Q ss_pred             CceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc-------CcHHHHHHHhcCCCCCEEEecccchHHHHhcccc
Q 010101          236 DTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV-------DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDE  308 (518)
Q Consensus       236 ~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~-------~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~  308 (518)
                      +|++|||||+||+||+||.|||++|+++|+|+.|.++++       ++++++++.++.++|.|+|||||||+++++|+|+
T Consensus         3 ~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~   82 (283)
T 3jyo_A            3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_dssp             CCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEETTSTTTTTCCHHHHHHHHHHTTCCEEEECTTCTTTTGGGSSE
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHcCCCeEEEEEEccccCCCHHHHHHHHHHHhhCCCCEEEECcccHHHHHHHhhh
Confidence            589999999999999999999999999999999999952       5899999999889999999999999999999999


Q ss_pred             cChhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHH
Q 010101          309 VHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKS  388 (518)
Q Consensus       309 ~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~  388 (518)
                      +|+.|+.+||||||++++ +|+|+||||||.||+.+|++.     +        ..+++++++|+|+||+||+++++|.+
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~-----~--------~~l~~k~vlVlGaGG~g~aia~~L~~  148 (283)
T 3jyo_A           83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG-----L--------PNAKLDSVVQVGAGGVGNAVAYALVT  148 (283)
T ss_dssp             ECHHHHHHTCCCEEEECT-TSCEEEECHHHHHHHHHHHHH-----C--------TTCCCSEEEEECCSHHHHHHHHHHHH
T ss_pred             CCHHHHHhCcceEEEECC-CCeEEEecCCHHHHHHHHHHh-----C--------cCcCCCEEEEECCcHHHHHHHHHHHH
Confidence            999999999999999873 789999999999999998752     1        35789999999999999999999999


Q ss_pred             CCC-eEEEEeCCHHHHHHHHHHhcCc-------ccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEE
Q 010101          389 RGA-RVIIFNRNYERAKALADAVSGE-------ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVF  460 (518)
Q Consensus       389 ~G~-~v~i~nRt~~ka~~la~~~~~~-------~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~  460 (518)
                      .|+ +|+|+||+.++++++++.++..       ..+++++.+ .+.++|+||||||+||.|. +..|++.+++++..+|+
T Consensus       149 ~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~-~l~~~DiVInaTp~Gm~~~-~~~pi~~~~l~~~~~v~  226 (283)
T 3jyo_A          149 HGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIED-VIAAADGVVNATPMGMPAH-PGTAFDVSCLTKDHWVG  226 (283)
T ss_dssp             TTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHH-HHHHSSEEEECSSTTSTTS-CSCSSCGGGCCTTCEEE
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHH-HHhcCCEEEECCCCCCCCC-CCCCCCHHHhCCCCEEE
Confidence            999 8999999999999999888632       122334433 3456899999999999986 45678888899999999


Q ss_pred             EEeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          461 DAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       461 Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      |++|+|.+|+|+++|+++||++++|++||++||++||++|||+++|.+.|++++.+
T Consensus       227 DlvY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~~~~  282 (283)
T 3jyo_A          227 DVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLS  282 (283)
T ss_dssp             ECCCSSSSCHHHHHHHHHTCCEECTHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHT
T ss_pred             EecCCCCCCHHHHHHHHCcCeEeCcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998864

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=100.00  E-value=2.1e-69  Score=547.78  Aligned_cols=267  Identities=30%  Similarity=0.565  Sum_probs=242.3

Q ss_pred             cCCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEecccC--cHHHHHHHhcCCCCCEEEecccchHHHHhccccc
Q 010101          232 HINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEV  309 (518)
Q Consensus       232 ~~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~  309 (518)
                      .++++|++|||||+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++.++|.|+|||||||+++++|+|++
T Consensus        32 ~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~l  111 (315)
T 3tnl_A           32 RITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKL  111 (315)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHHHHTTCCEEEECTTSTTTGGGGCSEE
T ss_pred             hcCCcccEEEEECCCccccccHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHhc
Confidence            47888999999999999999999999999999999999999984  8999999999899999999999999999999999


Q ss_pred             ChhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHC
Q 010101          310 HPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSR  389 (518)
Q Consensus       310 ~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~  389 (518)
                      |+.|+.|||||||+++  +|+|+||||||.||+.+|++     .+        ..+++|+++|+|+||+||+++++|++.
T Consensus       112 s~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~-----~~--------~~l~gk~~lVlGaGG~g~aia~~L~~~  176 (315)
T 3tnl_A          112 SPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKE-----AG--------HDIIGKKMTICGAGGAATAICIQAALD  176 (315)
T ss_dssp             CHHHHHHTCCSEEEEE--TTEEEEECCHHHHHHHHHHH-----TT--------CCCTTSEEEEECCSHHHHHHHHHHHHT
T ss_pred             CHHHHHhCccceEEec--CCEEEEeCCCHHHHHHHHHH-----cC--------CCccCCEEEEECCChHHHHHHHHHHHC
Confidence            9999999999999987  89999999999999999864     12        567899999999999999999999999


Q ss_pred             CC-eEEEEeCC---HHHHHHHHHHhcC------ccccccc---ccccCCCCccEEEEcCCCCCCCCCCCCCC-ChhhhcC
Q 010101          390 GA-RVIIFNRN---YERAKALADAVSG------EALHFEY---LHEFFPEKGMILANASAIGMEPNSDQSPV-PKEALKA  455 (518)
Q Consensus       390 G~-~v~i~nRt---~~ka~~la~~~~~------~~~~~~~---l~~~~~~~~divInatp~g~~~~~~~~~~-~~~~l~~  455 (518)
                      |+ +|+|+||+   .+++++++++++.      ...++++   +.+ .+.++|+||||||+||.|..+..|+ +.+.+++
T Consensus       177 Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~-~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~  255 (315)
T 3tnl_A          177 GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRK-EIAESVIFTNATGVGMKPFEGETLLPSADMLRP  255 (315)
T ss_dssp             TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH-HHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCT
T ss_pred             CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHh-hhcCCCEEEECccCCCCCCCCCCCCCcHHHcCC
Confidence            99 99999999   9999999988753      1223333   222 2346899999999999987556677 6778888


Q ss_pred             CCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010101          456 YELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV  514 (518)
Q Consensus       456 ~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~  514 (518)
                      ..+|+|++|+|.+|+|+++|+++||++++|++||++||++||++|||+++|.+.|++++
T Consensus       256 ~~~V~DlvY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~af~lwtG~~~p~~~~~~~l  314 (315)
T 3tnl_A          256 ELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEIL  314 (315)
T ss_dssp             TCEEEESCCSSSSCHHHHHHHHTTCEEECSHHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred             CCEEEEeccCCCCCHHHHHHHHCCCeEeCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999876

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=100.00  E-value=5.6e-68  Score=528.24  Aligned_cols=260  Identities=23%  Similarity=0.351  Sum_probs=236.6

Q ss_pred             eEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhhh
Q 010101          238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKS  315 (518)
Q Consensus       238 ~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  315 (518)
                      .+|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||+++++|+|++|+.|+.
T Consensus         3 ~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~   82 (272)
T 3pwz_A            3 DRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNITAPFKLRAFELADRRSERAQL   82 (272)
T ss_dssp             EEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcCCcccHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHHhhCCHHHHH
Confidence            4899999999999999999999999999999999998  58999999998899999999999999999999999999999


Q ss_pred             cCceeEEEEeccCCeEEEeecCHHHHHHH-HHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-eE
Q 010101          316 IGAVNTIIRRPIDGKLVGYNTDCESAISA-IEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RV  393 (518)
Q Consensus       316 iGavNTi~~~~~~g~l~G~NTD~~G~~~~-l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-~v  393 (518)
                      +||||||+++  +|+|+||||||.||+.+ |++     .+        .++++++++|+|+||+||+++++|.+.|+ +|
T Consensus        83 iGAvNTv~~~--~g~l~G~NTD~~G~~~~lL~~-----~~--------~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v  147 (272)
T 3pwz_A           83 ARAANALKFE--DGRIVAENFDGIGLLRDIEEN-----LG--------EPLRNRRVLLLGAGGAVRGALLPFLQAGPSEL  147 (272)
T ss_dssp             HTCCSEEEEE--TTEEEEECCHHHHHHHHHHTT-----SC--------CCCTTSEEEEECCSHHHHHHHHHHHHTCCSEE
T ss_pred             hCccceEEcc--CCeEEEecCCHHHHHHHHHHH-----cC--------CCccCCEEEEECccHHHHHHHHHHHHcCCCEE
Confidence            9999999887  89999999999999998 743     12        46789999999999999999999999998 99


Q ss_pred             EEEeCCHHHHHHHHHHhcC---cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchH
Q 010101          394 IIFNRNYERAKALADAVSG---EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTR  470 (518)
Q Consensus       394 ~i~nRt~~ka~~la~~~~~---~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~  470 (518)
                      +|+||+.+++++++++++.   ...+++++..   .++|+||||||+||.+.  ..+++.++++++.+|+|++|+|.+|+
T Consensus       148 ~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~---~~~DivInaTp~gm~~~--~~~i~~~~l~~~~~V~DlvY~P~~T~  222 (272)
T 3pwz_A          148 VIANRDMAKALALRNELDHSRLRISRYEALEG---QSFDIVVNATSASLTAD--LPPLPADVLGEAALAYELAYGKGLTP  222 (272)
T ss_dssp             EEECSCHHHHHHHHHHHCCTTEEEECSGGGTT---CCCSEEEECSSGGGGTC--CCCCCGGGGTTCSEEEESSCSCCSCH
T ss_pred             EEEeCCHHHHHHHHHHhccCCeeEeeHHHhcc---cCCCEEEECCCCCCCCC--CCCCCHHHhCcCCEEEEeecCCCCCH
Confidence            9999999999999999874   2334555432   57899999999999764  23577888999999999999999999


Q ss_pred             HHHHHHHCCCe-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 010101          471 LLREAAEVGAT-VVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ  517 (518)
Q Consensus       471 ll~~A~~~G~~-~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~~  517 (518)
                      |+++|+++||+ +++|++||++||+.||++|||+++|.+.|++.+.+.
T Consensus       223 ll~~A~~~G~~~~~~Gl~ML~~Qa~~~f~lwtg~~~~~~~~~~~l~~~  270 (272)
T 3pwz_A          223 FLRLAREQGQARLADGVGMLVEQAAEAFAWWRGVRPDTRAVINQLTIP  270 (272)
T ss_dssp             HHHHHHHHSCCEEECTHHHHHHHHHHHHHHHHSCCCCCHHHHHHHCCC
T ss_pred             HHHHHHHCCCCEEECCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence            99999999998 999999999999999999999999999999987653

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=100.00  E-value=2.2e-68  Score=528.08  Aligned_cols=252  Identities=29%  Similarity=0.438  Sum_probs=230.5

Q ss_pred             CceEEEEecCCCCcccCHHHHHHHH----HHcCCCceEEecccCcHHHHHHHhcCCCCCEEEecccchHHHHhcccccCh
Q 010101          236 DTKIFGLVSNPVGHSKGPILHNPAF----RHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHP  311 (518)
Q Consensus       236 ~t~~~~liG~pi~hS~SP~~hn~~f----~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~  311 (518)
                      +|++|||||+||+||+||.|||++|    +++|+|+.|.++++++++++++.++.++|.|+|||||||+++++|+|++|+
T Consensus         2 k~~~~~viG~Pi~hS~SP~~hn~~f~~~~~~~gl~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~   81 (269)
T 3phh_A            2 KLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIKG   81 (269)
T ss_dssp             CEEEEEEEESSCTTCCHHHHHHHHHHHHHHHHSSEEEEEEEECCSSSCHHHHHHHTTEEEEEECTTCHHHHHHHSSEECG
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHHHHHcCCCCEEeeEEhhhHHHHHHHHhhCCCCEEEEccccHHHHHHHHhhcCH
Confidence            5889999999999999999999999    999999999999999999999999889999999999999999999999999


Q ss_pred             hhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC
Q 010101          312 LAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA  391 (518)
Q Consensus       312 ~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~  391 (518)
                      .|+.+||||||+++  +|+|+||||||.||+.+|++ .                .+++++|+|+||+||+++++|.+.|.
T Consensus        82 ~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~-~----------------~~k~vlvlGaGGaaraia~~L~~~G~  142 (269)
T 3phh_A           82 IALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ-K----------------NYQNALILGAGGSAKALACELKKQGL  142 (269)
T ss_dssp             GGGGTTCCCEEEEE--TTEEEEECCHHHHHHHHCC--------------------CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             HHHHhCceeEEEee--CCEEEEecChHHHHHHHHHH-c----------------CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            99999999999987  89999999999999999753 1                17899999999999999999999999


Q ss_pred             eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChh----hhcCCCEEEEEeeCCC
Q 010101          392 RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKE----ALKAYELVFDAVYTPR  467 (518)
Q Consensus       392 ~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~----~l~~~~~v~Di~Y~P~  467 (518)
                      +|+|+||+.+|+++++ +++....+++++     .++|+||||||+||.+.   .+++.+    .++++.+|+|++|+| 
T Consensus       143 ~v~V~nRt~~ka~~la-~~~~~~~~~~~l-----~~~DiVInaTp~Gm~~~---~~l~~~~l~~~l~~~~~v~D~vY~P-  212 (269)
T 3phh_A          143 QVSVLNRSSRGLDFFQ-RLGCDCFMEPPK-----SAFDLIINATSASLHNE---LPLNKEVLKGYFKEGKLAYDLAYGF-  212 (269)
T ss_dssp             EEEEECSSCTTHHHHH-HHTCEEESSCCS-----SCCSEEEECCTTCCCCS---CSSCHHHHHHHHHHCSEEEESCCSS-
T ss_pred             EEEEEeCCHHHHHHHH-HCCCeEecHHHh-----ccCCEEEEcccCCCCCC---CCCChHHHHhhCCCCCEEEEeCCCC-
Confidence            9999999999999999 887555555544     26899999999999874   457776    678889999999999 


Q ss_pred             chHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       468 ~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      +|+|+++|+++||++++|++||++||+.||++|||+++|.+.+.+.+..
T Consensus       213 ~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lw~g~~~~~~~~~~~~~~  261 (269)
T 3phh_A          213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRS  261 (269)
T ss_dssp             CCHHHHHHHHTTCCEECSHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred             chHHHHHHHHCcCEEECCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999966555643

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=100.00  E-value=1.5e-67  Score=527.45  Aligned_cols=264  Identities=25%  Similarity=0.393  Sum_probs=234.2

Q ss_pred             CCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccC
Q 010101          233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVH  310 (518)
Q Consensus       233 ~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  310 (518)
                      +..++++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|+|+|||||||+++++|+|++|
T Consensus         4 ~~~~m~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~ld~l~   83 (281)
T 3o8q_A            4 MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLT   83 (281)
T ss_dssp             ----CEEEEEECCSSSCCCHHHHHHHHHHHTTCCEEEEEECCCTTCHHHHHHHHHHTTCCEEEECTTSHHHHHHHCSEEC
T ss_pred             ccccccEEEEECCCCCccCcHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECCccHHHHHHHHhhcC
Confidence            345688999999999999999999999999999999999998  589999999988899999999999999999999999


Q ss_pred             hhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCC
Q 010101          311 PLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG  390 (518)
Q Consensus       311 ~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G  390 (518)
                      +.|+.+||||||++.+ +|+|+||||||.||+.+|++.     +        .++++++++|+|+||+||+++++|.+.|
T Consensus        84 ~~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~L~~~-----~--------~~l~~k~vlvlGaGg~g~aia~~L~~~G  149 (281)
T 3o8q_A           84 ERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLAQ-----Q--------VLLKGATILLIGAGGAARGVLKPLLDQQ  149 (281)
T ss_dssp             HHHHHHTCCSEEEECT-TSCEEEECCHHHHHHHHHHHT-----T--------CCCTTCEEEEECCSHHHHHHHHHHHTTC
T ss_pred             HHHHhhCeeeEEEEcC-CCcEEEEecHHHHHHHHHHHh-----C--------CCccCCEEEEECchHHHHHHHHHHHhcC
Confidence            9999999999999753 899999999999999998641     2        4678999999999999999999999999


Q ss_pred             C-eEEEEeCCHHHHHHHHHHhcC----cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeC
Q 010101          391 A-RVIIFNRNYERAKALADAVSG----EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYT  465 (518)
Q Consensus       391 ~-~v~i~nRt~~ka~~la~~~~~----~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~  465 (518)
                      + +|+|+||+.++++++++.++.    ...+++++.    .++|+||||||.||.+.  ..+++.+.++++.+|+|++|+
T Consensus       150 ~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~----~~aDiIInaTp~gm~~~--~~~l~~~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          150 PASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLK----QSYDVIINSTSASLDGE--LPAIDPVIFSSRSVCYDMMYG  223 (281)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCC----SCEEEEEECSCCCC------CSCCGGGEEEEEEEEESCCC
T ss_pred             CCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhc----CCCCEEEEcCcCCCCCC--CCCCCHHHhCcCCEEEEecCC
Confidence            8 999999999999999999874    223444432    57999999999999753  235777888888999999999


Q ss_pred             CCchHHHHHHHHCCCe-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          466 PRNTRLLREAAEVGAT-VVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       466 P~~T~ll~~A~~~G~~-~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      |.+|+|+++|+++||+ +++|++||++||+.||++|||+++|.+.|++.+.+
T Consensus       224 P~~T~ll~~A~~~G~~~~~~Gl~Mlv~Qa~~~f~lwtg~~~~~~~~~~~l~~  275 (281)
T 3o8q_A          224 KGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRK  275 (281)
T ss_dssp             SSCCHHHHHHHHTTCSEEECTHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred             CccCHHHHHHHHCCCCEEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            9999999999999998 99999999999999999999999999998888765

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=100.00  E-value=9.5e-69  Score=534.44  Aligned_cols=260  Identities=28%  Similarity=0.495  Sum_probs=230.1

Q ss_pred             EEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhhhc
Q 010101          239 IFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSI  316 (518)
Q Consensus       239 ~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~i  316 (518)
                      .|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||+++++|+|++|+.|+.+
T Consensus         2 ~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~i   81 (277)
T 3don_A            2 KFAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIPHKERIIPYLDDINEQAKSV   81 (277)
T ss_dssp             EEEEEESSCTTCCHHHHHHHHHHHTTCCCEEEEEECCGGGGGGHHHHHHHTTCSEEEECTTCTTTTGGGCSEECHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECcCCHHHHHHHhhhCCHHHHHh
Confidence            499999999999999999999999999999999998  489999999998999999999999999999999999999999


Q ss_pred             CceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-eEEE
Q 010101          317 GAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVII  395 (518)
Q Consensus       317 GavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i  395 (518)
                      ||||||+++  +|+|+||||||.||+++|++.     +        .++++++++|+|+||+||+++++|.+.|+ +|+|
T Consensus        82 GAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~-----~--------~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v  146 (277)
T 3don_A           82 GAVNTVLVK--DGKWIGYNTDGIGYVNGLKQI-----Y--------EGIEDAYILILGAGGASKGIANELYKIVRPTLTV  146 (277)
T ss_dssp             TCCCEEEEE--TTEEEEECCHHHHHHHHHHHH-----S--------TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEE
T ss_pred             CceeEEEec--CCEEEEECChHHHHHHHHHHh-----C--------CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            999999998  899999999999999998752     1        45778999999999999999999999999 9999


Q ss_pred             EeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHH
Q 010101          396 FNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREA  475 (518)
Q Consensus       396 ~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A  475 (518)
                      +||+.++++++++.+.  ...++++.+ ...++|+||||||+||.|..+ .+++.+.++++.+|+|++|+|.+|+|+++|
T Consensus       147 ~~R~~~~a~~la~~~~--~~~~~~~~~-~~~~aDiVInaTp~Gm~~~~~-~~l~~~~l~~~~~V~D~vY~P~~T~ll~~A  222 (277)
T 3don_A          147 ANRTMSRFNNWSLNIN--KINLSHAES-HLDEFDIIINTTPAGMNGNTD-SVISLNRLASHTLVSDIVYNPYKTPILIEA  222 (277)
T ss_dssp             ECSCGGGGTTCCSCCE--EECHHHHHH-TGGGCSEEEECCC-------C-CSSCCTTCCSSCEEEESCCSSSSCHHHHHH
T ss_pred             EeCCHHHHHHHHHhcc--cccHhhHHH-HhcCCCEEEECccCCCCCCCc-CCCCHHHcCCCCEEEEecCCCCCCHHHHHH
Confidence            9999999988875432  234555544 456789999999999988643 346677888999999999999999999999


Q ss_pred             HHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 010101          476 AEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ  517 (518)
Q Consensus       476 ~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~~  517 (518)
                      +++||++++|++||++||+.||++|||+++|.+.|++++.+.
T Consensus       223 ~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~l~~~  264 (277)
T 3don_A          223 EQRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQK  264 (277)
T ss_dssp             HHTTCCEECTHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHCcCEEeCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988764

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=3.3e-65  Score=508.27  Aligned_cols=259  Identities=28%  Similarity=0.439  Sum_probs=234.8

Q ss_pred             CCCCceE-EEEecCCCCcccCHHHHHHHHHHcCCCceEEecccCcHHHHHHHhcCCCCCEEEecccchHHHHhcccccCh
Q 010101          233 INPDTKI-FGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHP  311 (518)
Q Consensus       233 ~~~~t~~-~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~  311 (518)
                      ++++|++ |||||+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++++|++|+
T Consensus         2 i~~~t~~~~~viG~P--hS~SP~~hn~~~~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~~d~~~~   79 (271)
T 1npy_A            2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHP   79 (271)
T ss_dssp             CCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEECH
T ss_pred             cCCCceEEEEEECCC--CcccHHHHHHHHHHcCCCcEEEeechhhHHHHHHHhccCCCCeEEECcCCHHHHHHHHHHhhH
Confidence            6778999 9999999  999999999999999999999999988999999999888999999999999999999999999


Q ss_pred             hhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC
Q 010101          312 LAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA  391 (518)
Q Consensus       312 ~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~  391 (518)
                      .|+.+||||||+++  +|+|+||||||.||..+|++.     +        .. .+++++|+|+||+||+++++|.+.|+
T Consensus        80 ~A~~iGAvNTi~~~--~g~l~g~NTD~~G~~~~l~~~-----~--------~~-~~~~vlvlGaGgaarav~~~L~~~G~  143 (271)
T 1npy_A           80 SAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKY-----H--------LN-KNAKVIVHGSGGMAKAVVAAFKNSGF  143 (271)
T ss_dssp             HHHTTTCCCEEEEE--TTEEEEECHHHHHHHHHHHHT-----T--------CC-TTSCEEEECSSTTHHHHHHHHHHTTC
T ss_pred             HHHHhCCCCceECc--CCEEEeecCCHHHHHHHHHHh-----C--------CC-CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            99999999999987  899999999999999998641     1        22 46899999999999999999999999


Q ss_pred             -eEEEEeCCHHHHHHHHHHhcCcccccc-cccccCCCCccEEEEcCCCCCCCC--CCCCCCChhhhcCCCEEEEEeeCCC
Q 010101          392 -RVIIFNRNYERAKALADAVSGEALHFE-YLHEFFPEKGMILANASAIGMEPN--SDQSPVPKEALKAYELVFDAVYTPR  467 (518)
Q Consensus       392 -~v~i~nRt~~ka~~la~~~~~~~~~~~-~l~~~~~~~~divInatp~g~~~~--~~~~~~~~~~l~~~~~v~Di~Y~P~  467 (518)
                       +|+|+|||.+|+++|++.++.   .+. ++   ...++|+||||||.||.|.  .+..|++.+.++++.+|+|++|+|.
T Consensus       144 ~~i~v~nRt~~ka~~la~~~~~---~~~~~~---~~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P~  217 (271)
T 1npy_A          144 EKLKIYARNVKTGQYLAALYGY---AYINSL---ENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPV  217 (271)
T ss_dssp             CCEEEECSCHHHHHHHHHHHTC---EEESCC---TTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSS
T ss_pred             CEEEEEeCCHHHHHHHHHHcCC---ccchhh---hcccCCEEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeecCCC
Confidence             999999999999999999864   222 11   1356899999999999875  2334567678888899999999999


Q ss_pred             chHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010101          468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVL  515 (518)
Q Consensus       468 ~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~  515 (518)
                      +|+|+++|+++||++++|++||++||++||++|||.++|.+.|++++.
T Consensus       218 ~T~ll~~A~~~G~~~i~Gl~MLv~Qa~~~f~lw~g~~~~~~~~~~~~~  265 (271)
T 1npy_A          218 ETPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAEAAA  265 (271)
T ss_dssp             SCHHHHHHHHTTCEEECHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998874

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=100.00  E-value=4.6e-62  Score=492.84  Aligned_cols=275  Identities=33%  Similarity=0.492  Sum_probs=243.3

Q ss_pred             HhhhccCCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHh
Q 010101          227 VYQLEHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVA  304 (518)
Q Consensus       227 ~~~~~~~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~  304 (518)
                      -|++..++..|++|||||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.++..++.|+|||||||++|++
T Consensus        13 ~~~~~~~~~~t~~~~viG~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~~~~~~~l~~~v~~l~~~~~~G~nVTiP~K~~i~~   92 (297)
T 2egg_A           13 GENLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVTIPHKLAVIP   92 (297)
T ss_dssp             -------CCCCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTCHHHHHHHHHHHTCCEEEECTTCTTTTGG
T ss_pred             cccceecCCceeEEEEECCCcccccCHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCeEEECCcCHHHHHH
Confidence            488899999999999999999999999999999999999999999998  589999999988899999999999999999


Q ss_pred             cccccChhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHH
Q 010101          305 CCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAF  384 (518)
Q Consensus       305 ~~d~~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~  384 (518)
                      ++|++++.|+.+||||||+++  +|+|+|+||||.||..+|+..    .+        ..+++++++|+|+||+|+++++
T Consensus        93 ~ld~~~~~A~~iGavNti~~~--~g~l~g~nTd~~G~~~~l~~~----~~--------~~l~~~~vlVlGaGg~g~aia~  158 (297)
T 2egg_A           93 FLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEE----MN--------ITLDGKRILVIGAGGGARGIYF  158 (297)
T ss_dssp             GCSEECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHH----TT--------CCCTTCEEEEECCSHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCCeEECc--CCeEeeccCCHHHHHHHHHHh----CC--------CCCCCCEEEEECcHHHHHHHHH
Confidence            999999999999999999987  899999999999999998642    10        2467899999999999999999


Q ss_pred             HHHHCCC-eEEEEeCCHHHHHHHHHHhcC---cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEE
Q 010101          385 GAKSRGA-RVIIFNRNYERAKALADAVSG---EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVF  460 (518)
Q Consensus       385 ~L~~~G~-~v~i~nRt~~ka~~la~~~~~---~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~  460 (518)
                      +|.+.|+ +|+|+||+.++++++++.++.   ...+++++.+ ...++|+||||||.+|.|..+..+++.+.++++.+|+
T Consensus       159 ~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~-~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~  237 (297)
T 2egg_A          159 SLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAET-RLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVS  237 (297)
T ss_dssp             HHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHH-TGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEE
T ss_pred             HHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHh-hhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEE
Confidence            9999999 999999999999999999865   3334444444 4567999999999999876444456667788899999


Q ss_pred             EEeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          461 DAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       461 Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      |++|+|..|+|+++|+++||++++|++||++||++||++|||.++|.+.|++++.+
T Consensus       238 D~~y~P~~T~ll~~A~~~G~~~v~Gl~MLv~Qa~~af~~w~g~~~~~~~~~~~~~~  293 (297)
T 2egg_A          238 DIIYNPLETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVIE  293 (297)
T ss_dssp             ECCCSSSSCHHHHHHHHTTCEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred             EcCCCCCCCHHHHHHHHCcCEEECCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998865

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=100.00  E-value=1.6e-62  Score=484.31  Aligned_cols=245  Identities=31%  Similarity=0.499  Sum_probs=219.9

Q ss_pred             EEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhhhc
Q 010101          239 IFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKSI  316 (518)
Q Consensus       239 ~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~i  316 (518)
                      +|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++ ++|.|+|||||||+++++|+|+ |+.|+.+
T Consensus         2 ~~~viG~pi~hS~SP~~hn~~~~~~gl~~~Y~~~~v~~~~l~~~~~~~~-~~~~G~nVT~P~K~~v~~~~d~-~~~A~~i   79 (253)
T 3u62_A            2 KFCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRIL-EEYDGFNATIPHKERVMRYVEP-SEDAQRI   79 (253)
T ss_dssp             EEEEEESSCTTCSHHHHHHHHHHHHTCCCEEEEEECCGGGHHHHHHHHH-HHCSEEEECTTCTTGGGGGSEE-CHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCCCCEEEeEecCHHHHHHHHHHHh-hCCCceeecCChHHHHHHHhCC-CHHHHHc
Confidence            599999999999999999999999999999999998  48999999999 9999999999999999999999 9999999


Q ss_pred             CceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-eEEE
Q 010101          317 GAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVII  395 (518)
Q Consensus       317 GavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i  395 (518)
                      ||||||++   +   +||||||.||+++|++               ..+++ +++|||+||+||+++++|.+.|+ +|+|
T Consensus        80 GAvNTi~~---~---~G~NTD~~G~~~~l~~---------------~~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v  137 (253)
T 3u62_A           80 KAVNCVFR---G---KGYNTDWVGVVKSLEG---------------VEVKE-PVVVVGAGGAARAVIYALLQMGVKDIWV  137 (253)
T ss_dssp             TCCCEEET---T---EEECCHHHHHHHHTTT---------------CCCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CcceEeec---C---EEEcchHHHHHHHHHh---------------cCCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEE
Confidence            99999975   3   9999999999999753               13568 99999999999999999999999 9999


Q ss_pred             EeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHH
Q 010101          396 FNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREA  475 (518)
Q Consensus       396 ~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A  475 (518)
                      +||+.+++++|+++++.  ..++++.+ ...++|+||||||+||.|.  ..+++.+.++++.+|+|++|+  .|+|+++|
T Consensus       138 ~nR~~~ka~~la~~~~~--~~~~~~~~-~~~~aDiVInatp~gm~p~--~~~i~~~~l~~~~~V~Divy~--~T~ll~~A  210 (253)
T 3u62_A          138 VNRTIERAKALDFPVKI--FSLDQLDE-VVKKAKSLFNTTSVGMKGE--ELPVSDDSLKNLSLVYDVIYF--DTPLVVKA  210 (253)
T ss_dssp             EESCHHHHHTCCSSCEE--EEGGGHHH-HHHTCSEEEECSSTTTTSC--CCSCCHHHHTTCSEEEECSSS--CCHHHHHH
T ss_pred             EeCCHHHHHHHHHHccc--CCHHHHHh-hhcCCCEEEECCCCCCCCC--CCCCCHHHhCcCCEEEEeeCC--CcHHHHHH
Confidence            99999999999877653  23444433 3456899999999999986  346777788999999999999  89999999


Q ss_pred             HHCCCe-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          476 AEVGAT-VVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       476 ~~~G~~-~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      +++||+ +++|++||++||+.||++|||  .+++.|++.+.+
T Consensus       211 ~~~G~~~~~~Gl~MLv~Qa~~af~~wtg--~~~~~~~~~~~~  250 (253)
T 3u62_A          211 RKLGVKHIIKGNLMFYYQAMENLKIWGI--YDEEVFKEVFGE  250 (253)
T ss_dssp             HHHTCSEEECTHHHHHHHHHHHHHHTTC--CCHHHHHHHHGG
T ss_pred             HHCCCcEEECCHHHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence            999999 999999999999999999999  467888887654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=100.00  E-value=5.2e-61  Score=479.64  Aligned_cols=263  Identities=23%  Similarity=0.345  Sum_probs=229.2

Q ss_pred             eEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhhh
Q 010101          238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKS  315 (518)
Q Consensus       238 ~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  315 (518)
                      ++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||||||+++++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~~~~~~l~~~i~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~   81 (272)
T 1p77_A            2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKL   81 (272)
T ss_dssp             EEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcccccCHHHHHHHHHHCCcCeEEEEEEcCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHHhhcCHHHHH
Confidence            6899999999999999999999999999999999998  58999999998899999999999999999999999999999


Q ss_pred             cCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEE
Q 010101          316 IGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVII  395 (518)
Q Consensus       316 iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i  395 (518)
                      +||||||++.. +|+|+||||||.||+.+|++ .    +        ..+++++++|+|+||+|++++++|.+.|.+|+|
T Consensus        82 igavNti~~~~-~g~l~g~NTD~~G~~~~L~~-~----~--------~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v  147 (272)
T 1p77_A           82 AEACNTLKKLD-DGKLYADNTDGIGLVTDLQR-L----N--------WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVL  147 (272)
T ss_dssp             HTCCSEEEECT-TSCEEEECCHHHHHHHHHHH-T----T--------CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEE
T ss_pred             hCCceEEEEcc-CCEEEEecCCHHHHHHHHHH-h----C--------CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            99999999832 89999999999999999864 1    2        457789999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHhcCc-ccccccccccCC-CCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc-hHHH
Q 010101          396 FNRNYERAKALADAVSGE-ALHFEYLHEFFP-EKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN-TRLL  472 (518)
Q Consensus       396 ~nRt~~ka~~la~~~~~~-~~~~~~l~~~~~-~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~-T~ll  472 (518)
                      +||+.++++++++.++.. .+...++++ .. .++|+|||+||.|+.+..  .+++.+.+.++.+|+|++|+|.. |+|+
T Consensus       148 ~~R~~~~a~~l~~~~~~~~~~~~~~~~~-~~~~~~DivIn~t~~~~~~~~--~~i~~~~l~~~~~v~D~~y~p~~~t~ll  224 (272)
T 1p77_A          148 ANRTFSKTKELAERFQPYGNIQAVSMDS-IPLQTYDLVINATSAGLSGGT--ASVDAEILKLGSAFYDMQYAKGTDTPFI  224 (272)
T ss_dssp             EESSHHHHHHHHHHHGGGSCEEEEEGGG-CCCSCCSEEEECCCC---------CCCHHHHHHCSCEEESCCCTTSCCHHH
T ss_pred             EECCHHHHHHHHHHccccCCeEEeeHHH-hccCCCCEEEECCCCCCCCCC--CCCCHHHcCCCCEEEEeeCCCCcCCHHH
Confidence            999999999999887531 111112222 11 378999999999997642  24666778888999999999998 9999


Q ss_pred             HHHHHCCCe-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 010101          473 REAAEVGAT-VVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ  517 (518)
Q Consensus       473 ~~A~~~G~~-~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~~  517 (518)
                      ++|+++||+ +++|++||++|++.||++|+|.++|.+.|++++.++
T Consensus       225 ~~a~~~G~~~~v~G~~mLv~Qa~~af~~w~g~~~~~~~~~~~l~~~  270 (272)
T 1p77_A          225 ALCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMPDFVSVYEQLKKA  270 (272)
T ss_dssp             HHHHHTTCCCEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCEeeCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence            999999999 999999999999999999999999999999988653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=1e-59  Score=470.06  Aligned_cols=261  Identities=29%  Similarity=0.409  Sum_probs=233.3

Q ss_pred             eEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhhh
Q 010101          238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAKS  315 (518)
Q Consensus       238 ~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  315 (518)
                      ++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.+++++|.|+|||||||+.+++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVT~P~K~~~~~~ld~~~~~A~~   81 (271)
T 1nyt_A            2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAAL   81 (271)
T ss_dssp             CSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             CEEEEECCCcccccCHHHHHHHHHHCCCCcEEEEEEcCHHHHHHHHHHHHhCCCCeEEEccCCHHHHHHHHhhcCHHHHH
Confidence            5799999999999999999999999999999999998  58999999998899999999999999999999999999999


Q ss_pred             cCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEE
Q 010101          316 IGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVII  395 (518)
Q Consensus       316 iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i  395 (518)
                      +||||||+++. +|+|+||||||.||+.+|++ .    +        ..+++++++|+|+||+|++++++|.+.|++|+|
T Consensus        82 igavNti~~~~-~g~l~G~ntD~~G~~~~L~~-~----~--------~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v  147 (271)
T 1nyt_A           82 AGAVNTLMRLE-DGRLLGDNTDGVGLLSDLER-L----S--------FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTI  147 (271)
T ss_dssp             HTCCSEEEECT-TSCEEEECCHHHHHHHHHHH-H----T--------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             hCCceEEEEcC-CCeEEEeCCCHHHHHHHHHh-c----C--------cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence            99999999832 89999999999999999875 1    2        457789999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHhcCc----ccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHH
Q 010101          396 FNRNYERAKALADAVSGE----ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRL  471 (518)
Q Consensus       396 ~nRt~~ka~~la~~~~~~----~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~l  471 (518)
                      +||+.++++++++.++..    ..+++++.  . ..+|+|||+||.++.+..  .+++.+.++++.+|+|++|+|..|+|
T Consensus       148 ~~R~~~~~~~la~~~~~~~~~~~~~~~~~~--~-~~~DivVn~t~~~~~~~~--~~i~~~~l~~~~~v~D~~y~p~~t~~  222 (271)
T 1nyt_A          148 TNRTVSRAEELAKLFAHTGSIQALSMDELE--G-HEFDLIINATSSGISGDI--PAIPSSLIHPGIYCYDMFYQKGKTPF  222 (271)
T ss_dssp             ECSSHHHHHHHHHHTGGGSSEEECCSGGGT--T-CCCSEEEECCSCGGGTCC--CCCCGGGCCTTCEEEESCCCSSCCHH
T ss_pred             EECCHHHHHHHHHHhhccCCeeEecHHHhc--c-CCCCEEEECCCCCCCCCC--CCCCHHHcCCCCEEEEeccCCcCCHH
Confidence            999999999999887641    11222221  1 468999999999987542  24677778888999999999999999


Q ss_pred             HHHHHHCCCe-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 010101          472 LREAAEVGAT-VVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ  517 (518)
Q Consensus       472 l~~A~~~G~~-~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~~  517 (518)
                      +++|+++||+ +++|++||++|++.||++|+|..+|.+.|++++.+.
T Consensus       223 ~~~a~~~G~~~~~~G~~mLv~Q~~~af~~w~g~~~~~~~~~~~l~~~  269 (271)
T 1nyt_A          223 LAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEE  269 (271)
T ss_dssp             HHHHHHTTCCEEECTHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCeecCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence            9999999999 999999999999999999999999999999988653

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=2.1e-58  Score=464.29  Aligned_cols=267  Identities=38%  Similarity=0.577  Sum_probs=239.6

Q ss_pred             CCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccC
Q 010101          233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVH  310 (518)
Q Consensus       233 ~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  310 (518)
                      ++++|++|||||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.++..+|.|+|||||||+++++++|+++
T Consensus         7 ~~~~~~~~~viG~pi~hS~Sp~~h~~~~~~~gi~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVtiP~k~~i~~~~d~~~   86 (287)
T 1nvt_A            7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEID   86 (287)
T ss_dssp             CCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEEC
T ss_pred             hcCCccEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHHhCCCCEEEEccCCHHHHHHHHHhcC
Confidence            677889999999999999999999999999999999999998  589999999987799999999999999999999999


Q ss_pred             hhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCC
Q 010101          311 PLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRG  390 (518)
Q Consensus       311 ~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G  390 (518)
                      +.|+.+|||||++++  +|+|+|+|||+.||+.+|++.     +        .++++++++|+|+||+|++++++|.+.|
T Consensus        87 ~~a~~igavnt~~~~--~g~l~g~nTd~~G~~~~L~~~-----~--------~~l~~k~vlV~GaGgiG~aia~~L~~~G  151 (287)
T 1nvt_A           87 KDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEE-----I--------GRVKDKNIVIYGAGGAARAVAFELAKDN  151 (287)
T ss_dssp             HHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHH-----H--------CCCCSCEEEEECCSHHHHHHHHHHTSSS
T ss_pred             HHHHHhCceeeEEee--CCEEEEecCCHHHHHHHHHHh-----C--------CCcCCCEEEEECchHHHHHHHHHHHHCC
Confidence            999999999999987  899999999999999998752     1        4578899999999999999999999999


Q ss_pred             CeEEEEeCCHHHHHHHHHHhcCc-------ccccccccccCCCCccEEEEcCCCCCCCCCCCCCC-ChhhhcCCCEEEEE
Q 010101          391 ARVIIFNRNYERAKALADAVSGE-------ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV-PKEALKAYELVFDA  462 (518)
Q Consensus       391 ~~v~i~nRt~~ka~~la~~~~~~-------~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~-~~~~l~~~~~v~Di  462 (518)
                       +|+++||+.+++++++++++..       .+.+.++.+ ...++|+|||+|+.++.|..+..++ +.+.++++.+|+|+
T Consensus       152 -~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv  229 (287)
T 1nvt_A          152 -NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDV-DLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDL  229 (287)
T ss_dssp             -EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTC-CCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEEC
T ss_pred             -CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHH-hhCCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence             9999999999999998877531       112222223 4567899999999999876455566 66778888999999


Q ss_pred             eeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          463 VYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       463 ~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      +|+|..|+|+++|+++||.+++|++||++|++.+|++|||.++|.+.|++++.+
T Consensus       230 ~y~p~~t~ll~~a~~~G~~~~~Gl~mL~~Qa~~af~~w~g~~~~~~~~~~~~~~  283 (287)
T 1nvt_A          230 IYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIID  283 (287)
T ss_dssp             CCSSSSCHHHHHHHTTTCEEECTHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred             eeCCccCHHHHHHHHCCCEEeCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998865

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=100.00  E-value=5.9e-55  Score=436.54  Aligned_cols=265  Identities=29%  Similarity=0.530  Sum_probs=236.8

Q ss_pred             ccCCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccc
Q 010101          231 EHINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDE  308 (518)
Q Consensus       231 ~~~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~  308 (518)
                      .+++.+|++||+||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||+|||+++++++|+
T Consensus         6 ~~~~~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nvtiP~k~~i~~~ld~   85 (275)
T 2hk9_A            6 HMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDY   85 (275)
T ss_dssp             -CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEEEEEEECCGGGHHHHHHHHHHHTCCEEEECTTSTTTTGGGCSE
T ss_pred             ccccCCceEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999988  5899999999888999999999999999999999


Q ss_pred             cChhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHH
Q 010101          309 VHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKS  388 (518)
Q Consensus       309 ~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~  388 (518)
                      +++.|+.+||||||+++  +|+|.|+|||+.||+.+|++.     +        ..+++++++|||+|++|++++++|.+
T Consensus        86 l~~~A~~~gavnti~~~--~g~~~g~nTd~~G~~~~l~~~-----~--------~~~~~~~v~iiGaG~~g~aia~~L~~  150 (275)
T 2hk9_A           86 VEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSLKSL-----I--------PEVKEKSILVLGAGGASRAVIYALVK  150 (275)
T ss_dssp             ECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHH-----C--------TTGGGSEEEEECCSHHHHHHHHHHHH
T ss_pred             hhHHHHHhCCcceEEee--CCEEEeecCCHHHHHHHHHHh-----C--------CCcCCCEEEEECchHHHHHHHHHHHH
Confidence            99999999999999987  899999999999999998651     2        35678999999999999999999999


Q ss_pred             CCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc
Q 010101          389 RGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN  468 (518)
Q Consensus       389 ~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~  468 (518)
                      .|++|+++||+.++++++++.++....  .++.+ ...++|+||+|||.++.+.... +++.+.++++.+|+|++|  ..
T Consensus       151 ~g~~V~v~~r~~~~~~~l~~~~g~~~~--~~~~~-~~~~aDiVi~atp~~~~~~~~~-~i~~~~l~~g~~viDv~~--~~  224 (275)
T 2hk9_A          151 EGAKVFLWNRTKEKAIKLAQKFPLEVV--NSPEE-VIDKVQVIVNTTSVGLKDEDPE-IFNYDLIKKDHVVVDIIY--KE  224 (275)
T ss_dssp             HTCEEEEECSSHHHHHHHTTTSCEEEC--SCGGG-TGGGCSEEEECSSTTSSTTCCC-SSCGGGCCTTSEEEESSS--SC
T ss_pred             cCCEEEEEECCHHHHHHHHHHcCCeee--hhHHh-hhcCCCEEEEeCCCCCCCCCCC-CCCHHHcCCCCEEEEcCC--Ch
Confidence            999999999999999999887763322  13333 3457899999999998765332 455567888899999999  68


Q ss_pred             hHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 010101          469 TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLE  516 (518)
Q Consensus       469 T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~  516 (518)
                      |+++++|+++|+++++|++||++|++.+|++|+|.++|.+.|++++.+
T Consensus       225 t~ll~~a~~~g~~~v~g~~mlv~q~~~a~~~w~g~~~~~~~~~~~~~~  272 (275)
T 2hk9_A          225 TKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVPYSVAERSVRD  272 (275)
T ss_dssp             CHHHHHHHHTTCEEECSHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998754

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=100.00  E-value=1.3e-55  Score=435.00  Aligned_cols=226  Identities=18%  Similarity=0.306  Sum_probs=204.3

Q ss_pred             cCCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-C-Cc---HHHHHHHhcC-CCCcEEEEeecCCCCCCCCC
Q 010101            6 KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-F-SH---ISEVDKLIQH-PTLPAIVSYRLKSSRKSSDE   79 (518)
Q Consensus         6 ~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~-~~---~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~   79 (518)
                      .++|+|||||+++|.++++.+++.+...|+|+||||+|+|. . +.   .+++..+++. .++|+|||+|+.+|||++++
T Consensus        17 ~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~   96 (258)
T 4h3d_A           17 EGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLI   96 (258)
T ss_dssp             SSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCC
Confidence            46899999999999999999999988899999999999998 3 32   2455666654 47999999999999999999


Q ss_pred             CcHHHHHHHHHHHhhcC-CcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEE
Q 010101           80 ACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMK  157 (518)
Q Consensus        80 ~~~~~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivK  157 (518)
                      + +++|.++++.+++.| +||||||+..+++.++++.+ +++.++|||+||||| ++||+++++.+++.+|.++||||+|
T Consensus        97 ~-~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~Hdf-~~TP~~~el~~~~~~~~~~gaDIvK  174 (258)
T 4h3d_A           97 S-RDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDF-NKTPKKEEIVSRLCRMQELGADLPK  174 (258)
T ss_dssp             C-HHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEES-SCCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred             C-HHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEecC-CCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            9 999999999999988 99999999999988888876 567899999999999 9999999999999999999999999


Q ss_pred             EEcccCCcccHHHHHHHhcc-----CCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhcc
Q 010101          158 LEIAVDSITDLAPVFEMLTH-----CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEH  232 (518)
Q Consensus       158 ia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~~  232 (518)
                      ||+||++.+|+++|++++.+     .++|+|+|+||+.|++||++++.|||++||+++++++||||+++++|+++|++.+
T Consensus       175 ia~~~~~~~D~l~Ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~fGS~lTf~~~~~~sAPGQl~~~el~~~l~lL~  254 (258)
T 4h3d_A          175 IAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLH  254 (258)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHHHHTCSSCBEEEECTGGGGGGGTCHHHHCBCEEECBCC---CTTCCBHHHHHHHHHHHH
T ss_pred             EEEccCCHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChHHHHHHHHhCCceEeccCCCCCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998653     4789999999999999999999999999999999999999999999999998764


Q ss_pred             C
Q 010101          233 I  233 (518)
Q Consensus       233 ~  233 (518)
                      .
T Consensus       255 ~  255 (258)
T 4h3d_A          255 K  255 (258)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=100.00  E-value=6.9e-55  Score=425.54  Aligned_cols=221  Identities=19%  Similarity=0.337  Sum_probs=198.5

Q ss_pred             CceEEEeecC-CCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCc---HHHHHHHhcCC-CCcEEEEeecCCCCCCCCCCc
Q 010101            8 SLLVCTQLEC-ETTEEMQASIEQAKVEGADLVELCIDSME-FSH---ISEVDKLIQHP-TLPAIVSYRLKSSRKSSDEAC   81 (518)
Q Consensus         8 ~~~icv~l~~-~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~---~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~   81 (518)
                      .|+||+||++ ++.++++.+++.+.+.|+|+||||+|+|. .+.   .+++..+|+.. ++|+|||+|+.+|||.++.+ 
T Consensus         3 ~p~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~-   81 (238)
T 1sfl_A            3 HVEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFT-   81 (238)
T ss_dssp             CCEEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCC-
T ss_pred             CCeEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecccccCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCC-
Confidence            5899999999 99999999999888889999999999998 543   34556677766 79999999999999999999 


Q ss_pred             HHHHHHHHHHHhhc-CCcEEEEecCC--CCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEE
Q 010101           82 KNTCLQVLRRALDL-DVEFVEMDYEV--ASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMK  157 (518)
Q Consensus        82 ~~~~~~ll~~~~~~-g~~yvDiEl~~--~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivK  157 (518)
                      +++|+++++.++++ ++||||||++.  +.+.++++.+ +|++++|||+||||| ++||+.++|.++|++|.++||||+|
T Consensus        82 ~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf-~~tp~~~el~~~~~~~~~~gaDivK  160 (238)
T 1sfl_A           82 NDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNF-ESTPPLDELQFIFFKMQKFNPEYVK  160 (238)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEES-SCCCCHHHHHHHHHHHHTTCCSEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecCC-CCCcCHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999998 59999999999  7777778776 567899999999999 9999999999999999999999999


Q ss_pred             EEcccCCcccHHHHHHHhcc----CCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhh
Q 010101          158 LEIAVDSITDLAPVFEMLTH----CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQL  230 (518)
Q Consensus       158 ia~~~~~~~D~~~l~~~~~~----~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~  230 (518)
                      ||+||++.+|+++|++++.+    .++|+|+|+||+.|++||+++++|||++||+++++++||||+++++++++|+.
T Consensus       161 ia~~a~~~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~~sAPGQl~~~el~~~l~~  237 (238)
T 1sfl_A          161 LAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL  237 (238)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCCSSTTCCBHHHHHHHHTT
T ss_pred             EEecCCCHHHHHHHHHHHHHHhhcCCCCEEEEECCCCchHHHHHHHHhCCCeeecCCCCCCCCCCCCHHHHHHHHHh
Confidence            99999999999999999765    47899999999999999999999999999999999999999999999999864

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.4e-54  Score=427.42  Aligned_cols=224  Identities=17%  Similarity=0.271  Sum_probs=205.4

Q ss_pred             ccCCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CC-c---HHHHHHHhcCC-CCcEEEEeecCCCCCCC-
Q 010101            5 AKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FS-H---ISEVDKLIQHP-TLPAIVSYRLKSSRKSS-   77 (518)
Q Consensus         5 ~~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~-~---~~~l~~l~~~~-~~PiI~T~R~~~eGG~~-   77 (518)
                      ..+.|+||+||++++.++++.+++.+.+.|+|+||||+|+|. .+ .   .+++..+|+.. ++|+|||+|+.+|||.+ 
T Consensus        16 g~~~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~   95 (257)
T 2yr1_A           16 GGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIPILFTIRSEREGGQPI   95 (257)
T ss_dssp             SSSSCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCCCC
T ss_pred             CCCCcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccccCcHHHHHHHHHHHHHhccCCCEEEEEeecccCCCCC
Confidence            467899999999999999999999988899999999999998 43 2   34566777766 89999999999999999 


Q ss_pred             CCCcHHHHHHHHHHHhhcC-CcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCE
Q 010101           78 DEACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADV  155 (518)
Q Consensus        78 ~~~~~~~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadi  155 (518)
                      +++ +++|+++++.++++| +||||||++.++ .++++.+ +++.++|||+||||| ++||+.++|.++|++|.++||||
T Consensus        96 ~~~-~~~~~~ll~~~~~~g~~d~iDvEl~~~~-~~~~l~~~~~~~~~kvI~S~Hdf-~~tP~~~el~~~~~~~~~~gaDi  172 (257)
T 2yr1_A           96 PLN-EAEVRRLIEAICRSGAIDLVDYELAYGE-RIADVRRMTEECSVWLVVSRHYF-DGTPRKETLLADMRQAERYGADI  172 (257)
T ss_dssp             SSC-HHHHHHHHHHHHHHTCCSEEEEEGGGTT-HHHHHHHHHHHTTCEEEEEEEES-SCCCCHHHHHHHHHHHHHTTCSE
T ss_pred             CCC-HHHHHHHHHHHHHcCCCCEEEEECCCCh-hHHHHHHHHHhCCCEEEEEecCC-CCCcCHHHHHHHHHHHHhcCCCE
Confidence            888 999999999999999 999999999887 6667765 567899999999999 99999999999999999999999


Q ss_pred             EEEEcccCCcccHHHHHHHhcc----CCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhc
Q 010101          156 MKLEIAVDSITDLAPVFEMLTH----CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLE  231 (518)
Q Consensus       156 vKia~~~~~~~D~~~l~~~~~~----~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~  231 (518)
                      +|||+||++.+|+++|++++.+    .++|+|+|+||+.|++||+++++|||++||+++++++||||+++++++++|+..
T Consensus       173 vKia~~a~s~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~~sAPGQl~~~el~~~l~~l  252 (257)
T 2yr1_A          173 AKVAVMPKSPEDVLVLLQATEEARRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSIL  252 (257)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHHHCSSCEEEEECTTTTHHHHHHGGGGTBCEEECBSSSCSSTTCCBHHHHHHHHHHH
T ss_pred             EEEEeccCCHHHHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHhCCceEecCCCCCCCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999754    368999999999999999999999999999999999999999999999998764

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=100.00  E-value=5.8e-55  Score=433.56  Aligned_cols=224  Identities=17%  Similarity=0.316  Sum_probs=206.8

Q ss_pred             cCCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCc----HHHHHHHhcCC-CCcEEEEeecCCCCCCCCC
Q 010101            6 KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSH----ISEVDKLIQHP-TLPAIVSYRLKSSRKSSDE   79 (518)
Q Consensus         6 ~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~----~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~   79 (518)
                      .++|+|||||++++.++++.+++.+...|+|+||||+|+|. .+.    .+++..+|+.. ++|+|||+|+++|||.|+.
T Consensus        37 ~g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~  116 (276)
T 3o1n_A           37 EGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQAL  116 (276)
T ss_dssp             SSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCSBCC
T ss_pred             CCCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCCCC
Confidence            46899999999999999999999876689999999999998 433    34566677665 8999999999999999999


Q ss_pred             CcHHHHHHHHHHHhhcC-CcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEE
Q 010101           80 ACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMK  157 (518)
Q Consensus        80 ~~~~~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivK  157 (518)
                      + +++|+++++.++++| +||||||+..+++.++++.+ +++.++|||+||||| ++||+.++|.++|++|.++||||+|
T Consensus       117 ~-~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~Hdf-~~tP~~~el~~~~~~~~~~GaDIvK  194 (276)
T 3o1n_A          117 T-TGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDF-HKTPAAEEIVQRLRKMQELGADIPK  194 (276)
T ss_dssp             C-HHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEES-SCCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred             C-HHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEeecC-CCCcCHHHHHHHHHHHHHcCCCEEE
Confidence            9 999999999999999 99999999999888888876 567899999999999 9999999999999999999999999


Q ss_pred             EEcccCCcccHHHHHHHhcc-----CCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhc
Q 010101          158 LEIAVDSITDLAPVFEMLTH-----CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLE  231 (518)
Q Consensus       158 ia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~  231 (518)
                      ||+||++.+|+++|++++.+     .++|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++|+..
T Consensus       195 ia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~vTf~~l~~~sAPGQl~~~~l~~~l~~l  273 (276)
T 3o1n_A          195 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTIL  273 (276)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHHHHTCCSCCEEEECSGGGTHHHHCHHHHTCCEEECBSSCCSSTTCCBHHHHHHHHHHH
T ss_pred             EEecCCChHHHHHHHHHHHHHHhcCCCCCEEEEECCCchhhHHHHHHHhCCceEecCCCCCCCCCCCCHHHHHHHHHHh
Confidence            99999999999999999754     578999999999999999999999999999999999999999999999998764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=100.00  E-value=1.6e-51  Score=409.08  Aligned_cols=258  Identities=34%  Similarity=0.525  Sum_probs=231.9

Q ss_pred             ceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhh
Q 010101          237 TKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAK  314 (518)
Q Consensus       237 t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  314 (518)
                      +++|||||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.++.. +.|+|||+|||+++++++|++++.|+
T Consensus         1 ~~~~~~~G~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~-~~G~~vt~P~k~~i~~~~~~l~~~a~   79 (263)
T 2d5c_A            1 MLRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLTLPLKEAALAHLDWVSPEAQ   79 (263)
T ss_dssp             CEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGHHHHHHHHHHH-CSEEEECTTCTTGGGGGCSEECHHHH
T ss_pred             CeEEEEECCCcccccCHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHhcccc-CceEEEcccCHHHHHHHHHHHhHHHH
Confidence            36899999999999999999999999999999999987  5799999988766 99999999999999999999999999


Q ss_pred             hcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEE
Q 010101          315 SIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI  394 (518)
Q Consensus       315 ~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~  394 (518)
                      .+|+|||++++  +|++.|+|||+.|++.+|++.     +        .++++ +++|||+|++|+++++.|.+.|++|+
T Consensus        80 ~~gavn~i~~~--~g~~~g~ntd~~g~~~~l~~~-----~--------~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~  143 (263)
T 2d5c_A           80 RIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAG-----G--------IPLKG-PALVLGAGGAGRAVAFALREAGLEVW  143 (263)
T ss_dssp             HHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHT-----T--------CCCCS-CEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred             HhCCCCcEEcc--CCeEEEeCCCHHHHHHHHHHh-----C--------CCCCC-eEEEECCcHHHHHHHHHHHHCCCEEE
Confidence            99999999986  899999999999999998641     2        45788 99999999999999999999999999


Q ss_pred             EEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHH
Q 010101          395 IFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLRE  474 (518)
Q Consensus       395 i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~  474 (518)
                      ++||+.++++++++.++..   ++++.+ . .++|+||+|||.++.+... .+++.+.++++.+|+|++|+|.+|+|++.
T Consensus       144 v~~r~~~~~~~l~~~~~~~---~~~~~~-~-~~~Divi~~tp~~~~~~~~-~~l~~~~l~~g~~viD~~~~p~~t~l~~~  217 (263)
T 2d5c_A          144 VWNRTPQRALALAEEFGLR---AVPLEK-A-REARLLVNATRVGLEDPSA-SPLPAELFPEEGAAVDLVYRPLWTRFLRE  217 (263)
T ss_dssp             EECSSHHHHHHHHHHHTCE---ECCGGG-G-GGCSEEEECSSTTTTCTTC-CSSCGGGSCSSSEEEESCCSSSSCHHHHH
T ss_pred             EEECCHHHHHHHHHHhccc---hhhHhh-c-cCCCEEEEccCCCCCCCCC-CCCCHHHcCCCCEEEEeecCCcccHHHHH
Confidence            9999999999999988754   344444 3 6789999999999876433 34556678888999999999999999999


Q ss_pred             HHHCCCeeeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 010101          475 AAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ  517 (518)
Q Consensus       475 A~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~~~~  517 (518)
                      |+++|+++++|+.||++|++.+|++|+|.++|.+.|++++.+.
T Consensus       218 a~~~g~~~v~g~~mlv~q~~~a~~~w~g~~~~~~~~~~~~~~~  260 (263)
T 2d5c_A          218 AKAKGLKVQTGLPMLAWQGALAFRLWTGLLPDPSGMEEAARRA  260 (263)
T ss_dssp             HHHTTCEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             HHHCcCEEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988764

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans}

Probab=100.00  E-value=1e-52  Score=412.74  Aligned_cols=219  Identities=15%  Similarity=0.262  Sum_probs=185.2

Q ss_pred             cccCCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcHHHHHHHh-cCCCCcEEEEeecCCCCCCCCCCc
Q 010101            4 AAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLI-QHPTLPAIVSYRLKSSRKSSDEAC   81 (518)
Q Consensus         4 ~~~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~~~l~~l~-~~~~~PiI~T~R~~~eGG~~~~~~   81 (518)
                      ...+.|+|||||+++|.++++ ++..+...|+|+||||+|+|. .+..+....++ ...++|+|||+|+++|||.|+.+ 
T Consensus        30 ~g~g~pkIcvpl~~~t~~e~~-~~~~~~~~gaD~VElRvD~l~~~~~~~v~~~l~~~~~~~PiI~T~Rt~~EGG~~~~~-  107 (259)
T 3l9c_A           30 MGRGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSGHEVIFTLRTEKEGGNISLS-  107 (259)
T ss_dssp             ----CCEEEEEECCSSHHHHH-HCCCTTCCTTCEEEEEGGGSCGGGHHHHHHHHHHHTTTSEEEEECCBGGGTCSBCCC-
T ss_pred             ECCCCcEEEEEecCCCHHHHH-HHHHhhccCCCEEEEEeccccchhHHHHHHHHHHhcCCCcEEEEEeehhhCCCCCCC-
Confidence            345789999999999999997 555545579999999999998 33322233344 35789999999999999999999 


Q ss_pred             HHHHHHHHHHHhh-cCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEc
Q 010101           82 KNTCLQVLRRALD-LDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEI  160 (518)
Q Consensus        82 ~~~~~~ll~~~~~-~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~  160 (518)
                      +++|+++++.+++ +++||||||++.+++.++++.    +.+|||+||||| ++||+  +|.++|++|.++||||+|||+
T Consensus       108 ~~~y~~ll~~~~~~~~~dyIDVEl~~~~~~~~~l~----~~~kiI~S~Hdf-~~tp~--el~~~~~~~~~~GaDIvKia~  180 (259)
T 3l9c_A          108 NEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DFSNLILSYHNF-EETPE--NLMEVFSELTALAPRVVKIAV  180 (259)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEEHHHHGGGGGGGT----TCSSEEEEEEES-SCCCT--THHHHHHHHHHTCCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECcCCHHHHHHHH----hcCeEEEEeccC-CCCHH--HHHHHHHHHHHcCCCEEEEEe
Confidence            9999999999998 789999999999888777764    346999999999 99999  899999999999999999999


Q ss_pred             ccCCcccHHHHHHHhcc-----CCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhc
Q 010101          161 AVDSITDLAPVFEMLTH-----CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLE  231 (518)
Q Consensus       161 ~~~~~~D~~~l~~~~~~-----~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~  231 (518)
                      ||++.+|+++|++++.+     .++|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++|+..
T Consensus       181 ~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~lTf~~l~~~sAPGQl~~~el~~~l~~l  256 (259)
T 3l9c_A          181 MPKNEQDVLDLMNYTRGFKTLNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQESAPGQISLADMRKIKEVL  256 (259)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHCTTSEEEEEECTGGGHHHHHTHHHHTBSEEECBC-------CCBHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhccCCCCEEEEECCCCcccHHHHHHHhCCccccccCCCCCCCCCCCHHHHHHHHHHH
Confidence            99999999999999753     368999999999999999999999999999999999999999999999999864

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}

Probab=100.00  E-value=9.1e-53  Score=408.29  Aligned_cols=218  Identities=17%  Similarity=0.217  Sum_probs=185.4

Q ss_pred             CCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcHHHHHHHh-c-CCCCcEEEEeecCCCCCCCCCCcHH
Q 010101            7 NSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLI-Q-HPTLPAIVSYRLKSSRKSSDEACKN   83 (518)
Q Consensus         7 ~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~~~l~~l~-~-~~~~PiI~T~R~~~eGG~~~~~~~~   83 (518)
                      +.|+||+||++++.++++.+++.+. .++|+||||+|+|. .+. +.+.... . ..++|+|||+|+.+|||.|+.+ ++
T Consensus         2 ~~~~Icvpi~~~t~~e~~~~~~~~~-~~~D~vElRvD~l~~~~~-~~v~~~l~~~~~~~PiI~T~R~~~eGG~~~~~-~~   78 (231)
T 2ocz_A            2 NAMRIVAPVMPRHFDEAQAIDISKY-EDVNLIEWRADFLPKDEI-VAVAPAIFEKFAGKEIIFTLRTVQEGGNITLS-SQ   78 (231)
T ss_dssp             -CCEEEEEECCSSHHHHHTCCGGGG-TTCSEEEEEGGGSCGGGH-HHHHHHHHHHTTTSEEEEECCBGGGTCSBCCC-HH
T ss_pred             CCCEEEEEeCCCCHHHHHHHHHHhc-cCCCEEEEEeccccccCH-HHHHHHHHHHcCCCcEEEEEeecccCCCCCCC-HH
Confidence            5799999999999999999988854 58999999999998 443 2343222 1 1239999999999999999999 99


Q ss_pred             HHHHHHHHHhhcC-CcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEccc
Q 010101           84 TCLQVLRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAV  162 (518)
Q Consensus        84 ~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~  162 (518)
                      +|+++++.++++| +||||||++.++++++.+   +. .+|||+||||| ++||  ++|.++|++|.++||||+|||+||
T Consensus        79 ~~~~ll~~~~~~g~~d~iDvEl~~~~~~i~~~---~~-~~kvI~S~Hdf-~~tp--~el~~~~~~~~~~gaDivKia~~a  151 (231)
T 2ocz_A           79 EYVDIIKEINAIYNPDYIDFEYFTHKSVFQEM---LD-FPNLILSYHNF-EETP--ENLMEAFSEMTKLAPRVVKIAVMP  151 (231)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEETTTTGGGGGGG---TT-CSSEEEEEEES-SCCC--TTHHHHHHHHHHTCCSEEEEEECC
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCCCHHHHHHh---hc-CCeEEEEecCC-CCCH--HHHHHHHHHHHHcCCCEEEEEeec
Confidence            9999999999999 999999999887665543   33 49999999999 9999  899999999999999999999999


Q ss_pred             CCcccHHHHHHHhcc-----CCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhccCC
Q 010101          163 DSITDLAPVFEMLTH-----CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEHIN  234 (518)
Q Consensus       163 ~~~~D~~~l~~~~~~-----~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~~~~  234 (518)
                      ++.+|+++|++++.+     .++|+|+|+||+.|++||+++++|||++||+++++++||||+++++++++++..+.+
T Consensus       152 ~~~~D~l~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~~sAPGQl~~~el~~~l~~l~~~  228 (231)
T 2ocz_A          152 QSEQDVLDLMNYTRGFKTLNPEQEFATISMGKLGRLSRFAGDVIGSSWTYVSLDHVSGPGQVTLNDMKRIIEVLEMD  228 (231)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHGGGGGCHHHHTCCEEECBC------CCCBHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCchhHHHHHHHhCCceEeccCCCCCCCCCCCHHHHHHHHHHhhhh
Confidence            999999999998753     367999999999999999999999999999999999999999999999998876543

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A

Probab=100.00  E-value=4.2e-51  Score=393.74  Aligned_cols=211  Identities=19%  Similarity=0.259  Sum_probs=185.0

Q ss_pred             eEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCc---HHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHH
Q 010101           10 LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSH---ISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTC   85 (518)
Q Consensus        10 ~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   85 (518)
                      +||+||++++.++++.+++.   .|+|+||||+|+|. .+.   .+++..+|+. ++|+|||+|+.+|||.   + +++|
T Consensus         2 ~icv~l~~~~~~~~~~~~~~---~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~-~~PiI~T~R~~~eGG~---~-~~~~   73 (219)
T 2egz_A            2 LIAVPLDDTNFSENLKKAKE---KGADIVELRVDQFSDTSLNYVKEKLEEVHSQ-GLKTILTIRSPEEGGR---E-VKNR   73 (219)
T ss_dssp             EEEEEECSTTHHHHHHHHHH---HTCSEEEEEGGGCSCCCHHHHHHHHHHHHHT-TCEEEEECCCGGGTCC---C-CTTH
T ss_pred             EEEEEeCCCCHHHHHHHHHH---cCCCEEEEEeccccccCHHHHHHHHHHHHhc-CCcEEEEEeehhccCC---C-HHHH
Confidence            49999999999999887755   48999999999998 443   2456677775 7999999999999998   4 6789


Q ss_pred             HHHHHHHhhcCCcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccCC
Q 010101           86 LQVLRRALDLDVEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDS  164 (518)
Q Consensus        86 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~~  164 (518)
                      +++++.++++ +||||||++.+ +..+.+.+ .+..++|+|+||||| ++||+.++|.++|++|.++|| |+|+|+||++
T Consensus        74 ~~ll~~~~~~-~d~iDvEl~~~-~~~~~l~~~~~~~g~kvI~S~Hdf-~~tp~~~el~~~~~~~~~~ga-ivKia~~a~~  149 (219)
T 2egz_A           74 EELFEELSPL-SDYTDIELSSR-GLLVKLYNITKEAGKKLIISYHNF-ELTPPNWIIREVLREGYRYGG-IPKIAVKANS  149 (219)
T ss_dssp             HHHHHHHTTT-SSEEEEETTCH-HHHHHHHHHHHHTTCEEEEEEEES-SCCCCHHHHHHHHHHHHHTTS-EEEEEEECSS
T ss_pred             HHHHHHHHhc-CCEEEEEccCC-ccHHHHHHHHHHcCCEEEEEecCC-CCCcCHHHHHHHHHHHHHcCC-EEEEEEccCC
Confidence            9999999999 99999999984 22233333 345679999999999 999999999999999999998 9999999999


Q ss_pred             cccHHHHHHHhccCCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhcc
Q 010101          165 ITDLAPVFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEH  232 (518)
Q Consensus       165 ~~D~~~l~~~~~~~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~~  232 (518)
                      .+|+++|++++.+.+.|+|+|+||+.|++||++++.|||++||+++++++||||+++++++++|+..+
T Consensus       150 ~~D~l~ll~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~~sAPGQl~~~el~~~l~~l~  217 (219)
T 2egz_A          150 YEDVARLLCISRQVEGEKILISMGDYGKISRLAGYVFGSVITYCSLEKAFAPGQIPLEEMVELRKKFY  217 (219)
T ss_dssp             HHHHHHHHHHHTTSCSCBEEEEESSGGGGHHHHGGGGTBCEEECBCC---CTTCCBHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCCcchhHHHHHHHhCCceEecCCCCCCCCCCCCHHHHHHHHHHhc
Confidence            99999999999888899999999999999999999999999999999889999999999999998653

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus}

Probab=100.00  E-value=4.2e-49  Score=372.75  Aligned_cols=193  Identities=22%  Similarity=0.309  Sum_probs=177.3

Q ss_pred             EEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCCCCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHHHHHHHH
Q 010101           12 CTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRR   91 (518)
Q Consensus        12 cv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll~~   91 (518)
                      ++||+++|.++ +++++.     +|+||||+|+|...       +| ..++|+|||+|+++|||.++.+ +++|+++++.
T Consensus         2 ~vpl~~~t~~~-~~~~~~-----aD~vElRvD~l~~~-------lr-~~~~PiI~T~R~~~eGG~~~~~-~~~~~~ll~~   66 (196)
T 2ox1_A            2 KLVATLSSPEE-LELAEK-----ADVVELRIDLFDFS-------GA-RVDKEKILTCRRVSDGGKFEGD-ERERIEKMKR   66 (196)
T ss_dssp             EEEEEECSHHH-HHHTTT-----CSEEEEETTTSCCT-------TS-CCCSEEEEECCBGGGTSSBCSC-HHHHHHHHHH
T ss_pred             eeeEcCCCHHH-HHHHhc-----CCEEEEEEchhhhh-------HH-hcCCcEEEEEeecccCCCCCCC-HHHHHHHHHH
Confidence            58999999999 776532     89999999999721       44 6789999999999999999999 9999999999


Q ss_pred             HhhcCC-cEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccCCcccHHH
Q 010101           92 ALDLDV-EFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAP  170 (518)
Q Consensus        92 ~~~~g~-~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~  170 (518)
                      ++++|+ ||||||++.+++.++       +++|||+||||| ++||+++++.++++  .++| ||+|||+||++.+|+++
T Consensus        67 ~~~~g~~d~iDvEl~~~~~~i~-------~~~kvI~S~Hdf-~~tp~~~~l~~~~~--~~~g-DivKia~~a~~~~D~l~  135 (196)
T 2ox1_A           67 AFDSLNPDYVDLESDLPDSAFD-------FNCRIIESYHNF-IRTPDYSELKGIVE--GRRG-DLVKIATMGKSKRDVET  135 (196)
T ss_dssp             HHHHHCCSEEEEETTSCGGGCC-------CSSEEEEEEEES-SCCCCHHHHHHHHH--TCCS-SEEEEEEECCSHHHHHH
T ss_pred             HHHhCCCcEEEEECCCCHhHHh-------CCCEEEEEecCC-CCCcCHHHHHHHHH--HHcC-CEEEEEEcCCCHHHHHH
Confidence            999997 999999998876532       789999999999 99999999999999  8999 99999999999999999


Q ss_pred             HHHHhccCCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhc
Q 010101          171 VFEMLTHCQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLE  231 (518)
Q Consensus       171 l~~~~~~~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~  231 (518)
                      |++++.+.+ |+|+|+||+.|++||+++++|||++||+++++++||||+++++++++|+..
T Consensus       136 ll~~~~~~~-p~I~~~MG~~G~~SRi~~~~~gs~~t~~~~~~~sAPGQl~~~el~~~l~~l  195 (196)
T 2ox1_A          136 IVRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIYCYVGSPKAPGQISLDDAREIISRL  195 (196)
T ss_dssp             HHHHHHHCS-SEEEEEESGGGTHHHHHHHHTTCSEEEEESSSCSSTTCCBHHHHHHHHHHH
T ss_pred             HHHHHhhCC-CeEEEEcCCCchhHHHhHhhhCCceEeccCCCCCCCCCCCHHHHHHHHHHh
Confidence            999988775 999999999999999999999999999999988999999999999998753

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=100.00  E-value=3.5e-38  Score=316.84  Aligned_cols=239  Identities=20%  Similarity=0.177  Sum_probs=195.4

Q ss_pred             CCCCcccCHHHHHHHHH-----HcCCCceEEeccc--CcHHHHHHHh-cCCCCCEEEecccchH-HHHhcccccChhhhh
Q 010101          245 NPVGHSKGPILHNPAFR-----HTRFNGIYVPMLV--DDVKEFFRTY-SGTDFAGFSVGIPHKE-PAVACCDEVHPLAKS  315 (518)
Q Consensus       245 ~pi~hS~SP~~hn~~f~-----~~gl~~~y~~~~~--~~l~~~~~~l-~~~~~~G~~VT~P~K~-~v~~~~d~~~~~A~~  315 (518)
                      .||.||+||.|||.+|+     .+|+++.|.++++  ++++++++.+ ...+..|+|||.|||. ..+..++++.+.++.
T Consensus         2 ~~i~hs~sp~~h~~~~~~~~~~~~g~~~~y~~~~v~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~~~   81 (287)
T 1lu9_A            2 KKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKK   81 (287)
T ss_dssp             CCEEEEEESSSSCCHHHHHHHHHTTCSEEEEESSCCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHHH
T ss_pred             CceEEEccCCCCCCchhhheeeccCcceEeccCCcCHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHHHH
Confidence            69999999999999999     5999999999998  6899999885 5778999999999976 445566666666654


Q ss_pred             --cCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEc-cchhHHHHHHHHHHCCCe
Q 010101          316 --IGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVG-AGGAGRALAFGAKSRGAR  392 (518)
Q Consensus       316 --iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlG-aGg~araia~~L~~~G~~  392 (518)
                        +|++||++..  +  +.|+|||+.||+.+|++.+    +        ..+++++++|+| +||+|++++++|.+.|++
T Consensus        82 ~~~gavnt~~~~--~--~~G~nTd~~g~~~~l~~~~----~--------~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~  145 (287)
T 1lu9_A           82 RFFGPFRVSCML--D--SNGSNTTAAAGVALVVKAA----G--------GSVKGKKAVVLAGTGPVGMRSAALLAGEGAE  145 (287)
T ss_dssp             HCBTTBCCEEEE--C--STTHHHHHHHHHHHHHHHT----T--------SCCTTCEEEEETCSSHHHHHHHHHHHHTTCE
T ss_pred             hcCCCeEEEEec--C--CCcCCchHHHHHHHHHHhh----c--------cCCCCCEEEEECCCcHHHHHHHHHHHHCcCE
Confidence              5999999876  4  4799999999999986521    1        346789999999 899999999999999999


Q ss_pred             EEEEeCCHHHHHHHHHHhcC----cc--cccc---cccccCCCCccEEEEcCCCCCCCCCCCCCC-ChhhhcCCCEEEEE
Q 010101          393 VIIFNRNYERAKALADAVSG----EA--LHFE---YLHEFFPEKGMILANASAIGMEPNSDQSPV-PKEALKAYELVFDA  462 (518)
Q Consensus       393 v~i~nRt~~ka~~la~~~~~----~~--~~~~---~l~~~~~~~~divInatp~g~~~~~~~~~~-~~~~l~~~~~v~Di  462 (518)
                      |++++|+.++++++++++..    ..  .++.   ++.+ ...+.|+|||+++.|+.+.    ++ +...+.+...++|+
T Consensus       146 V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~DvlVn~ag~g~~~~----~~~~~~~~~~~~~~~dv  220 (287)
T 1lu9_A          146 VVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAE-AVKGAHFVFTAGAIGLELL----PQAAWQNESSIEIVADY  220 (287)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHH-HTTTCSEEEECCCTTCCSB----CHHHHTTCTTCCEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHH-HHHhCCEEEECCCccccCC----ChhHcCchHHHHHHHHh
Confidence            99999999999999877632    11  1221   2222 2456899999999887542    22 12224666789999


Q ss_pred             eeCCCc----hHHHHHH------HHCCCeeeccHHHHHHHHHHHHHHhcCCCC
Q 010101          463 VYTPRN----TRLLREA------AEVGATVVSGVEMFIRQALGQFRLFTGGLA  505 (518)
Q Consensus       463 ~Y~P~~----T~ll~~A------~~~G~~~i~G~~ml~~Qa~~qf~lw~g~~~  505 (518)
                      +|.|..    |+|+++|      ++.|+++++|++||++||..+ ++|+|.++
T Consensus       221 n~~~~~~i~~t~ll~~a~~~~~~~~~G~~~v~gl~ml~~qa~~a-~~~~~~~~  272 (287)
T 1lu9_A          221 NAQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLKLKLHRACIA-KLFESSEG  272 (287)
T ss_dssp             CCSSSCSBTTSCTTCEEEEETTEEEECHHHHHHHHHHHHHHHHH-HHTSCSCC
T ss_pred             hhhhhHHhhcchHHhhccccCCCccccceeECchHHHHHHHHHH-HHhhCCCc
Confidence            999999    9999999      999999999999999999999 99999875

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=100.00  E-value=5.4e-37  Score=321.53  Aligned_cols=235  Identities=17%  Similarity=0.196  Sum_probs=186.6

Q ss_pred             cCCCCceEEE--EecCCCCcccCHHHHHHH--HHHc-CCCceEEecccC---cHHHHHHHhcCCCCCEEEe---cccchH
Q 010101          232 HINPDTKIFG--LVSNPVGHSKGPILHNPA--FRHT-RFNGIYVPMLVD---DVKEFFRTYSGTDFAGFSV---GIPHKE  300 (518)
Q Consensus       232 ~~~~~t~~~~--liG~pi~hS~SP~~hn~~--f~~~-gl~~~y~~~~~~---~l~~~~~~l~~~~~~G~~V---T~P~K~  300 (518)
                      -++..|+++|  ++|+   ||.||.|||++  |+++ |+|+.|++++++   ++.++++.+. ++|.|+||   |+|||+
T Consensus        68 vvtdgt~ilGlG~iG~---hS~sPvmh~ka~lf~~~gGid~~yi~ldv~d~de~~~~v~~l~-~~f~GinvED~T~P~k~  143 (439)
T 2dvm_A           68 VVSDGSRILGLGNIGP---LAGLPVMEGKALLFKRFGGVDAFPIMIKEQEPNKFIDIVKAIA-PTFGGINLEDIASPKCF  143 (439)
T ss_dssp             EEECSTTBTTTBCCCH---HHHHHHHHHHHHHHHHHHCCEEEEEECSCCSHHHHHHHHHHTG-GGCSEEEECSCCTTHHH
T ss_pred             EEECCCeEecccceec---cccCHHHHHHHHHHHHhCCCCCeeeeeecCCHHHHHHHHHHhC-ccCcEEEEEeCCCchHH
Confidence            3455677777  8998   99999999966  9999 899999999994   4555566665 79999999   999999


Q ss_pred             HHHhcccccChhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHH
Q 010101          301 PAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGR  380 (518)
Q Consensus       301 ~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~ar  380 (518)
                      ++++++|+         +|||+++.. |++++| |||+.||+++|+. .    |        .++++++++|+||||+|+
T Consensus       144 ~il~~l~~---------avNt~vf~d-D~~gtg-ntd~aG~~~AL~~-~----g--------~~l~~~rvlvlGAGgAg~  199 (439)
T 2dvm_A          144 YILERLRE---------ELDIPVFHD-DQQGTA-AVVLAGLLNALKV-V----G--------KKISEITLALFGAGAAGF  199 (439)
T ss_dssp             HHHHHHHH---------HCSSCEEEH-HHHHHH-HHHHHHHHHHHHH-H----T--------CCTTTCCEEEECCSHHHH
T ss_pred             HHHHHHHH---------hcCEEEEeC-CCcEEe-ehHHHHHHHHHHH-h----C--------CCccCCEEEEECccHHHH
Confidence            99999986         999999863 778999 9999999999874 1    2        457889999999999999


Q ss_pred             HHHHHHHHCCC---eEEEEe----CC--HHHHHH---HH---HHhcCcc---cccccccccCCCCccEEEEcCCC--CCC
Q 010101          381 ALAFGAKSRGA---RVIIFN----RN--YERAKA---LA---DAVSGEA---LHFEYLHEFFPEKGMILANASAI--GME  440 (518)
Q Consensus       381 aia~~L~~~G~---~v~i~n----Rt--~~ka~~---la---~~~~~~~---~~~~~l~~~~~~~~divInatp~--g~~  440 (518)
                      ++++.|.+.|+   +|+|+|    |+  ..+++.   +.   +.+....   ..+.++.+ .+.++|++||+||+  ||.
T Consensus       200 aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e-~l~~aDVlInaT~~~~G~~  278 (439)
T 2dvm_A          200 ATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQE-ALKDADVLISFTRPGPGVI  278 (439)
T ss_dssp             HHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHH-HHTTCSEEEECSCCCSSSS
T ss_pred             HHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHH-HhccCCEEEEcCCCccCCC
Confidence            99999999998   799999    98  444333   32   2222110   12233333 34568999999999  876


Q ss_pred             CCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeee-ccHHHHHHHHHHHHHHhcC
Q 010101          441 PNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVV-SGVEMFIRQALGQFRLFTG  502 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i-~G~~ml~~Qa~~qf~lw~g  502 (518)
                      +.   .  ....+.+..+|||+ |+|.+|+++++|++.|+.++ +|++||++|+..+| .|.|
T Consensus       279 ~~---e--~v~~m~~~~iVfDL-ynP~~t~~~~~A~~~G~~ivatG~~ml~~Q~nn~~-~FPG  334 (439)
T 2dvm_A          279 KP---Q--WIEKMNEDAIVFPL-ANPVPEILPEEAKKAGARIVATGRSDYPNQINNLL-GFPG  334 (439)
T ss_dssp             CH---H--HHTTSCTTCEEEEC-CSSSCSSCHHHHHHHTCSEECBSCSSSSSBCCGGG-THHH
T ss_pred             Ch---H--HHHhcCCCCEEEEC-CCCCCcchHHHHHHcCCeEEcCCCchhHHHHHHHh-cccC
Confidence            42   1  12335677899999 99999999999999999998 99999999987666 4544

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.72  E-value=2.8e-19  Score=184.92  Aligned_cols=188  Identities=16%  Similarity=0.174  Sum_probs=143.4

Q ss_pred             CcccCHHHHHHHHHHcCC-CceEEecccCcHHHHHHHhcCCCCCEEEe-cccchHHHHhcccccChhhhhc----CceeE
Q 010101          248 GHSKGPILHNPAFRHTRF-NGIYVPMLVDDVKEFFRTYSGTDFAGFSV-GIPHKEPAVACCDEVHPLAKSI----GAVNT  321 (518)
Q Consensus       248 ~hS~SP~~hn~~f~~~gl-~~~y~~~~~~~l~~~~~~l~~~~~~G~~V-T~P~K~~v~~~~d~~~~~A~~i----GavNT  321 (518)
                      -+++||.+||..|.+.|+ ++.|..+.++.  ++++.++..++.|+++ |+|||..+++++|.+++.|..+    ||+||
T Consensus        71 ~~vksP~~~~~~~~~~g~~~~~y~~~~~~~--~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~nt  148 (361)
T 1pjc_A           71 VKVKEPLPAEYDLMQKDQLLFTYLHLAAAR--ELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARFL  148 (361)
T ss_dssp             ECSSCCCGGGGGGCCTTCEEEECCCGGGCH--HHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             EEECCCCHHHHHhhcCCCEEEEEeccccCH--HHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHHH
Confidence            378999999999999997 88999888752  4566666678999999 9999999999999999999999    99999


Q ss_pred             EEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          322 IIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       322 i~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      +...  +|+  |+..      ..    +             ..+++++|+|+|+|++|++++..+..+|++|++++|+.+
T Consensus       149 ~~~~--~g~--G~~l------~~----l-------------~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~  201 (361)
T 1pjc_A          149 ERQQ--GGR--GVLL------GG----V-------------PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE  201 (361)
T ss_dssp             SGGG--TSC--CCCT------TC----B-------------TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             hhcc--CCC--ceec------cC----C-------------CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            9765  554  3331      11    1             124568999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcc--c--ccccccccCCCCccEEEEcCCCCCCCCCCCCCCCh---hhhcCCCEEEEEeeCCC
Q 010101          402 RAKALADAVSGEA--L--HFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPK---EALKAYELVFDAVYTPR  467 (518)
Q Consensus       402 ka~~la~~~~~~~--~--~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~---~~l~~~~~v~Di~Y~P~  467 (518)
                      +++.+.+.++...  .  ..+++.+ ...++|+||||++.++.+.  ...+..   ..++++.+++|+.|.|.
T Consensus       202 r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DvVI~~~~~~~~~~--~~li~~~~~~~~~~g~~ivdv~~~~g  271 (361)
T 1pjc_A          202 RLSYLETLFGSRVELLYSNSAEIET-AVAEADLLIGAVLVPGRRA--PILVPASLVEQMRTGSVIVDVAVDQG  271 (361)
T ss_dssp             HHHHHHHHHGGGSEEEECCHHHHHH-HHHTCSEEEECCCCTTSSC--CCCBCHHHHTTSCTTCEEEETTCTTC
T ss_pred             HHHHHHHhhCceeEeeeCCHHHHHH-HHcCCCEEEECCCcCCCCC--CeecCHHHHhhCCCCCEEEEEecCCC
Confidence            9988876654321  1  1122222 2346899999998765321  111232   34678899999999864

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.48  E-value=2.7e-14  Score=149.62  Aligned_cols=146  Identities=26%  Similarity=0.367  Sum_probs=111.8

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      .+.|++++|+|+|++|++++..|...|+ +|+++||+.++++++++.++...+.++++.+ ...++|+||++|+.++.. 
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~-~l~~aDvVi~at~~~~~~-  241 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVD-HLARSDVVVSATAAPHPV-  241 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHH-HHHTCSEEEECCSSSSCC-
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHH-HhcCCCEEEEccCCCCce-
Confidence            3578999999999999999999999999 9999999999999999999876545555443 345689999999866422 


Q ss_pred             CCCCCCChhhh----cCCCEEEEEeeCCCc-h------------------HHHHHHHHCCCeeeccHHHHHHHHHHHHHH
Q 010101          443 SDQSPVPKEAL----KAYELVFDAVYTPRN-T------------------RLLREAAEVGATVVSGVEMFIRQALGQFRL  499 (518)
Q Consensus       443 ~~~~~~~~~~l----~~~~~v~Di~Y~P~~-T------------------~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~l  499 (518)
                      .+...+....+    .+..+++|+.+ |.+ +                  .+.+++++.|+..++|++|+++|++.+|+.
T Consensus       242 ~~~~~l~~~~lk~r~~~~~v~vdia~-P~~i~~~l~~l~~v~l~d~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~  320 (404)
T 1gpj_A          242 IHVDDVREALRKRDRRSPILIIDIAN-PRDVEEGVENIEDVEVRTIDDLRVIARENLERRRKEIPKVEKLIEEELSTVEE  320 (404)
T ss_dssp             BCHHHHHHHHHHCSSCCCEEEEECCS-SCSBCTTGGGSTTEEEEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             ecHHHHHHHHHhccCCCCEEEEEccC-CCCCCccccccCCeEEEeHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111012    24578999988 663 3                  456777788999999999999999999999


Q ss_pred             hcCCCCCHHHHHH
Q 010101          500 FTGGLAPEDFMRK  512 (518)
Q Consensus       500 w~g~~~p~~~~~~  512 (518)
                      |++...+...|+.
T Consensus       321 w~~~~~~~~~I~~  333 (404)
T 1gpj_A          321 ELEKLKERRLVAD  333 (404)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHH
Confidence            9988766665554

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.47  E-value=9.3e-16  Score=163.27  Aligned_cols=140  Identities=24%  Similarity=0.336  Sum_probs=108.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCcc--ccc---ccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSR-GARVIIFNRNYERAKALADAVSGEA--LHF---EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~-G~~v~i~nRt~~ka~~la~~~~~~~--~~~---~~l~~~~~~~~divInatp  436 (518)
                      ..+++++++|+|+|++|++++.+|.+. |++|++++|+.++++++++..+...  .++   +++.+ .+.++|+|||++|
T Consensus        19 ~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~-~l~~~DvVIn~tp   97 (467)
T 2axq_A           19 GRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDK-VLADNDVVISLIP   97 (467)
T ss_dssp             ----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHH-HHHTSSEEEECSC
T ss_pred             cCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHH-HHcCCCEEEECCc
Confidence            456789999999999999999999998 5599999999999999987633221  122   22322 2346899999999


Q ss_pred             CCCCCCCCCCCCChhhhcCCCEEEEEee-CCCchHHHHHHHHCCCeeeccHHH-----------HHHHH------HHHHH
Q 010101          437 IGMEPNSDQSPVPKEALKAYELVFDAVY-TPRNTRLLREAAEVGATVVSGVEM-----------FIRQA------LGQFR  498 (518)
Q Consensus       437 ~g~~~~~~~~~~~~~~l~~~~~v~Di~Y-~P~~T~ll~~A~~~G~~~i~G~~m-----------l~~Qa------~~qf~  498 (518)
                      .++.+.     +...++..+..++|++| .|..|+|+++|+++|+.+++|++|           +++|+      +.+|+
T Consensus        98 ~~~~~~-----v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv~~i~g~G~~PG~~~~~a~~li~q~~~~g~~~~s~~  172 (467)
T 2axq_A           98 YTFHPN-----VVKSAIRTKTDVVTSSYISPALRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTIDEVHRAGGKLKSFL  172 (467)
T ss_dssp             GGGHHH-----HHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hhhhHH-----HHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCCEEEecCCcCccchHHHHHHHHHHHHhccCcceEEE
Confidence            876431     34456777788999999 677899999999999999999999           99998      66899


Q ss_pred             HhcCCCCCHH
Q 010101          499 LFTGGLAPED  508 (518)
Q Consensus       499 lw~g~~~p~~  508 (518)
                      +|+|..+|.+
T Consensus       173 ~wtG~~p~~~  182 (467)
T 2axq_A          173 SYCGGLPAPE  182 (467)
T ss_dssp             EEEEEEECGG
T ss_pred             EEecccCCcc
Confidence            9999865543

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=99.45  E-value=4.6e-13  Score=131.93  Aligned_cols=221  Identities=15%  Similarity=0.142  Sum_probs=158.3

Q ss_pred             EEEEecC-CCCcccCHHHHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchH-----HHHhccc
Q 010101          239 IFGLVSN-PVGHSKGPILHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKE-----PAVACCD  307 (518)
Q Consensus       239 ~~~liG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~-----~v~~~~d  307 (518)
                      ..-++|+ |-+++-- ..-.++++++|++..+..++-    +++.+.++.+ .++++.|+.|..|++.     .++..+|
T Consensus        39 avilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~  117 (286)
T 4a5o_A           39 AVILVGTDPASQVYV-AHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIH  117 (286)
T ss_dssp             EEEEESCCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSC
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCC
Confidence            3445664 4444322 234478899999999888853    3677777777 4678999999999987     6777665


Q ss_pred             ccChhhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHH
Q 010101          308 EVHPLAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGA  386 (518)
Q Consensus       308 ~~~~~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L  386 (518)
                      - +..+.-+..+|+-..-  .|.-...+++..|++..|++.     +        .+++||+++|+|+|+ +|+.++..|
T Consensus       118 p-~KDVDG~~~~N~g~l~--~g~~~~~PcTp~gv~~lL~~~-----~--------i~l~Gk~vvVvGrs~iVG~plA~lL  181 (286)
T 4a5o_A          118 P-DKDVDGFHPYNIGRLA--QRMPLLRPCTPKGIMTLLAST-----G--------ADLYGMDAVVVGASNIVGRPMALEL  181 (286)
T ss_dssp             G-GGCTTCCSHHHHHHHH--TTCCSSCCHHHHHHHHHHHHT-----T--------CCCTTCEEEEECTTSTTHHHHHHHH
T ss_pred             c-ccccccCChhhhHHHh--cCCCCCCCCCHHHHHHHHHHh-----C--------CCCCCCEEEEECCCchhHHHHHHHH
Confidence            4 5566677888875322  233345789999999987651     2        678999999999998 899999999


Q ss_pred             HHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          387 KSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       387 ~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                      ...|+.|++++|.....                 .+ ...++|+||+|++.   |.    .++.++++++.+|+|+.++|
T Consensus       182 ~~~gAtVtv~hs~T~~L-----------------~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          182 LLGGCTVTVTHRFTRDL-----------------AD-HVSRADLVVVAAGK---PG----LVKGEWIKEGAIVIDVGINR  236 (286)
T ss_dssp             HHTTCEEEEECTTCSCH-----------------HH-HHHTCSEEEECCCC---TT----CBCGGGSCTTCEEEECCSCS
T ss_pred             HHCCCeEEEEeCCCcCH-----------------HH-HhccCCEEEECCCC---CC----CCCHHHcCCCeEEEEecccc
Confidence            99999999998742211                 11 23468999999974   22    37788999999999999997


Q ss_pred             C-------chHHHHHHHHCCCe-ee-ccHH-----HHHHHHHHHHHHhc
Q 010101          467 R-------NTRLLREAAEVGAT-VV-SGVE-----MFIRQALGQFRLFT  501 (518)
Q Consensus       467 ~-------~T~ll~~A~~~G~~-~i-~G~~-----ml~~Qa~~qf~lw~  501 (518)
                      .       +..|-...+..++- -+ .|.+     ||+.+.+.+++.|.
T Consensus       237 ~~~gkl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~aa~~~~  285 (286)
T 4a5o_A          237 QADGRLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLH  285 (286)
T ss_dssp             SCCCCSSCSBCHHHHHHHCSEECCSSCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccCCcccCccHHHHHhhceEeCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            3       35554444445543 23 3555     88888888877764

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=99.45  E-value=1.2e-13  Score=136.25  Aligned_cols=219  Identities=15%  Similarity=0.142  Sum_probs=157.8

Q ss_pred             EEEecC-CCCcccCHHHHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccch-----HHHHhcccc
Q 010101          240 FGLVSN-PVGHSKGPILHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHK-----EPAVACCDE  308 (518)
Q Consensus       240 ~~liG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d~  308 (518)
                      .-++|+ |-+++-- ..-.++++++|++..+..++-    +++.+.++.+ .++++.|+.|.+|+.     ..++..+|-
T Consensus        39 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p  117 (285)
T 3l07_A           39 AIIVGNDPASKTYV-ASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKP  117 (285)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCc
Confidence            445574 3443322 344478899999999888853    3677777777 467899999999997     677777765


Q ss_pred             cChhhhhcCceeEEEEeccCCe-EEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHH
Q 010101          309 VHPLAKSIGAVNTIIRRPIDGK-LVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGA  386 (518)
Q Consensus       309 ~~~~A~~iGavNTi~~~~~~g~-l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L  386 (518)
                       +..+.-++.+|+-..-  .|. -...+++..|++..|++.     +        .+++||+++|+|+|+ +|+.++..|
T Consensus       118 -~KDVDG~~~~N~G~l~--~g~~~~~~PcTp~gv~~lL~~~-----~--------i~l~Gk~vvVIG~s~iVG~p~A~lL  181 (285)
T 3l07_A          118 -EKDVDGFHPTNVGRLQ--LRDKKCLESCTPKGIMTMLREY-----G--------IKTEGAYAVVVGASNVVGKPVSQLL  181 (285)
T ss_dssp             -GGBTTCCSHHHHHHHH--HTCTTCCCCHHHHHHHHHHHHT-----T--------CCCTTCEEEEECCCTTTHHHHHHHH
T ss_pred             -ccccccCChhheeehh--cCCCCCCCCCCHHHHHHHHHHh-----C--------CCCCCCEEEEECCCchhHHHHHHHH
Confidence             6667778888876432  122 345789999999987651     2        578999999999999 799999999


Q ss_pred             HHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          387 KSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       387 ~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                      ...|+.|++++|+...                 +.+ ...++|+||+|++.   |.    .++.++++++.+|+|+.++|
T Consensus       182 ~~~gAtVtv~hs~t~~-----------------L~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavVIDvgi~~  236 (285)
T 3l07_A          182 LNAKATVTTCHRFTTD-----------------LKS-HTTKADILIVAVGK---PN----FITADMVKEGAVVIDVGINH  236 (285)
T ss_dssp             HHTTCEEEEECTTCSS-----------------HHH-HHTTCSEEEECCCC---TT----CBCGGGSCTTCEEEECCCEE
T ss_pred             HHCCCeEEEEeCCchh-----------------HHH-hcccCCEEEECCCC---CC----CCCHHHcCCCcEEEEecccC
Confidence            9999999999985321                 112 23568999999974   22    37788999999999999998


Q ss_pred             ------CchHHHHHHHHCCCe-eec-cHH-----HHHHHHHHHHHHh
Q 010101          467 ------RNTRLLREAAEVGAT-VVS-GVE-----MFIRQALGQFRLF  500 (518)
Q Consensus       467 ------~~T~ll~~A~~~G~~-~i~-G~~-----ml~~Qa~~qf~lw  500 (518)
                            .+..|-...+..++- -++ |.+     ||+.+.+.+.+.|
T Consensus       237 ~~g~l~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~a~~~~  283 (285)
T 3l07_A          237 VDGKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQEL  283 (285)
T ss_dssp             ETTEEECSBCHHHHTTTCSEECCSSSSSHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCceecCccHHHHHhhheEeCCCCCcChHHHHHHHHHHHHHHHHHh
Confidence                  455553333334432 233 443     8888888777655

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=99.42  E-value=3.2e-13  Score=133.12  Aligned_cols=219  Identities=15%  Similarity=0.165  Sum_probs=155.4

Q ss_pred             EEEecC-CCCcccCHHHHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccch-----HHHHhcccc
Q 010101          240 FGLVSN-PVGHSKGPILHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHK-----EPAVACCDE  308 (518)
Q Consensus       240 ~~liG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d~  308 (518)
                      .-++|+ |-+++-- ..-.++++++|++..+..++-    +++.+.++.+ .++++.|+.|.+|++     ..++..+|-
T Consensus        38 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p  116 (285)
T 3p2o_A           38 VILVGDNPASQTYV-KSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS  116 (285)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCG
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCc
Confidence            445664 3443322 234478899999999988873    3677777777 477999999999998     567776654


Q ss_pred             cChhhhhcCceeEEEEeccCCeEEE-eecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHH
Q 010101          309 VHPLAKSIGAVNTIIRRPIDGKLVG-YNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGA  386 (518)
Q Consensus       309 ~~~~A~~iGavNTi~~~~~~g~l~G-~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L  386 (518)
                       +..+.-+..+|+-..-  .|...| .+++..|++..|++.     +        .+++||+++|+|+|+ +|+.++..|
T Consensus       117 -~KDVDg~~~~N~g~l~--~g~~~g~~PcTp~gv~~lL~~~-----~--------i~l~Gk~vvVvGrs~iVG~p~A~lL  180 (285)
T 3p2o_A          117 -SKDVDGFHPINVGYLN--LGLESGFLPCTPLGVMKLLKAY-----E--------IDLEGKDAVIIGASNIVGRPMATML  180 (285)
T ss_dssp             -GGCTTCCSHHHHHHHH--TTCCSSCCCHHHHHHHHHHHHT-----T--------CCCTTCEEEEECCCTTTHHHHHHHH
T ss_pred             -ccccccCCHhhhhhhh--cCCCCCCCCCCHHHHHHHHHHh-----C--------CCCCCCEEEEECCCchHHHHHHHHH
Confidence             5556667777764322  233333 788999999987651     2        678999999999998 799999999


Q ss_pred             HHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCC
Q 010101          387 KSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTP  466 (518)
Q Consensus       387 ~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P  466 (518)
                      ...|+.|++++|+...                 +.+ ...++|+||+|++.   |.    .+..++++++.+|+|+.++|
T Consensus       181 ~~~gAtVtv~h~~t~~-----------------L~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavVIDVgi~~  235 (285)
T 3p2o_A          181 LNAGATVSVCHIKTKD-----------------LSL-YTRQADLIIVAAGC---VN----LLRSDMVKEGVIVVDVGINR  235 (285)
T ss_dssp             HHTTCEEEEECTTCSC-----------------HHH-HHTTCSEEEECSSC---TT----CBCGGGSCTTEEEEECCCEE
T ss_pred             HHCCCeEEEEeCCchh-----------------HHH-HhhcCCEEEECCCC---CC----cCCHHHcCCCeEEEEeccCc
Confidence            9999999999986322                 112 23568999999974   22    37788999999999999987


Q ss_pred             C-------chHHHHHHHH-CCCe--eeccHH-----HHHHHHHHHHHHhc
Q 010101          467 R-------NTRLLREAAE-VGAT--VVSGVE-----MFIRQALGQFRLFT  501 (518)
Q Consensus       467 ~-------~T~ll~~A~~-~G~~--~i~G~~-----ml~~Qa~~qf~lw~  501 (518)
                      .       +..| ..+++ .++-  +=.|.+     ||+.+.+.+++.|.
T Consensus       236 ~~~gkl~GDVdf-~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~a~~~~~  284 (285)
T 3p2o_A          236 LESGKIVGDVDF-EEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRL  284 (285)
T ss_dssp             CTTSCEECSBCH-HHHTTTEEEECCSSSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCCCEeccccH-HHHHhhheEeCCCCCcCcHHHHHHHHHHHHHHHHHhh
Confidence            3       3455 33433 3432  223554     88888887776653

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=99.41  E-value=8.2e-13  Score=131.11  Aligned_cols=225  Identities=20%  Similarity=0.193  Sum_probs=158.3

Q ss_pred             EEEEecC-CCCcccCHHHHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccch-----HHHHhccc
Q 010101          239 IFGLVSN-PVGHSKGPILHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHK-----EPAVACCD  307 (518)
Q Consensus       239 ~~~liG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d  307 (518)
                      ..-++|+ |-+++.- ..-.++++++|++..+..++-    +++.+.++.+ .++++.|+.|..|+.     ..++..+|
T Consensus        41 avilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~  119 (300)
T 4a26_A           41 ASIIVGQRMDSKKYV-QLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIH  119 (300)
T ss_dssp             EEEEESCCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSC
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCC
Confidence            3446664 4444322 234478899999999888853    3677777777 467899999999998     67777776


Q ss_pred             ccChhhhhcCceeEEEEeccCC-eEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHH
Q 010101          308 EVHPLAKSIGAVNTIIRRPIDG-KLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFG  385 (518)
Q Consensus       308 ~~~~~A~~iGavNTi~~~~~~g-~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~  385 (518)
                      - +..+.-+..+|+-..-. ++ .-.-.+++..|++..|++.     +        .+++||+++|+|+|+ +|+.++..
T Consensus       120 p-~KDVDG~~~~N~G~l~~-g~~~~~~~PcTp~gv~~lL~~~-----~--------i~l~Gk~vvVIG~s~iVG~p~A~l  184 (300)
T 4a26_A          120 P-HKDADALLPVNVGLLHY-KGREPPFTPCTAKGVIVLLKRC-----G--------IEMAGKRAVVLGRSNIVGAPVAAL  184 (300)
T ss_dssp             G-GGCTTCCSHHHHHHHHC-TTCCCSCCCHHHHHHHHHHHHH-----T--------CCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             c-ccccccCCcceEEEeec-CCCcCCCCCCCHHHHHHHHHHc-----C--------CCCCCCEEEEECCCchHHHHHHHH
Confidence            5 56667778888754320 11 1112688899999987752     2        578999999999998 79999999


Q ss_pred             HHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeC
Q 010101          386 AKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYT  465 (518)
Q Consensus       386 L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~  465 (518)
                      |...|+.|++++|.....+ +              .+ ...++|+||+|++.   |.    .++.++++++.+|+|+.++
T Consensus       185 L~~~gAtVtv~~~~T~~l~-l--------------~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          185 LMKENATVTIVHSGTSTED-M--------------ID-YLRTADIVIAAMGQ---PG----YVKGEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             HHHTTCEEEEECTTSCHHH-H--------------HH-HHHTCSEEEECSCC---TT----CBCGGGSCTTCEEEECCCE
T ss_pred             HHHCCCeEEEEeCCCCCch-h--------------hh-hhccCCEEEECCCC---CC----CCcHHhcCCCcEEEEEecc
Confidence            9999999999998322211 0              01 23458999999984   22    3778899999999999987


Q ss_pred             CC-------------chHHHHHHHH-CCCe-eec-cH-----HHHHHHHHHHHHHhcCC
Q 010101          466 PR-------------NTRLLREAAE-VGAT-VVS-GV-----EMFIRQALGQFRLFTGG  503 (518)
Q Consensus       466 P~-------------~T~ll~~A~~-~G~~-~i~-G~-----~ml~~Qa~~qf~lw~g~  503 (518)
                      +.             +..| +.+++ .++- -++ |.     .||+.+.+.+++.|.+.
T Consensus       242 ~~~~~~~~~g~kl~GDVdf-~~v~~~a~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~~~  299 (300)
T 4a26_A          242 PVPDPSRKDGYRLVGDVCF-EEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKAALGV  299 (300)
T ss_dssp             EESCSCSTTSCEEECSBCH-HHHTTTCSEEECTTTSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCcCCcccCCceeecCccH-HHHHhhceEeCCCCCcChHHHHHHHHHHHHHHHHHHhcC
Confidence            52             2345 34444 3432 223 43     49999999998888763

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.27  E-value=1.3e-11  Score=124.13  Aligned_cols=132  Identities=17%  Similarity=0.186  Sum_probs=105.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.+++++|+|+|++|++++..|...|++|++++|+.++++.+.+ ++.......++.+ ...++|+||+++|.++...
T Consensus       153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~~~~~l~~-~l~~aDvVi~~~p~~~i~~  230 (300)
T 2rir_A          153 YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE-MGLVPFHTDELKE-HVKDIDICINTIPSMILNQ  230 (300)
T ss_dssp             SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCEEEEGGGHHH-HSTTCSEEEECCSSCCBCH
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-CCCeEEchhhHHH-HhhCCCEEEECCChhhhCH
Confidence            4678999999999999999999999999999999999988776654 4543323344444 4567999999999865321


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeee--ccHHHHHHHHHHHHHHhcC
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVV--SGVEMFIRQALGQFRLFTG  502 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i--~G~~ml~~Qa~~qf~lw~g  502 (518)
                         .  ....++++.+++|+.+.|..|++ +.+++.|+.++  +|+.|.+.|+...+.+|..
T Consensus       231 ---~--~~~~mk~g~~lin~a~g~~~~~~-~~a~~~G~~~i~~pg~~g~v~~a~a~~l~~~~  286 (300)
T 2rir_A          231 ---T--VLSSMTPKTLILDLASRPGGTDF-KYAEKQGIKALLAPGLPGIVAPKTAGQILANV  286 (300)
T ss_dssp             ---H--HHTTSCTTCEEEECSSTTCSBCH-HHHHHHTCEEEECCCHHHHHCHHHHHHHHHHH
T ss_pred             ---H--HHHhCCCCCEEEEEeCCCCCcCH-HHHHHCCCEEEECCCCCCcHHHHHHHHHHHHH
Confidence               1  11346788999999999999987 88999999865  9999999999999999864

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=99.22  E-value=3.5e-13  Score=143.01  Aligned_cols=134  Identities=22%  Similarity=0.279  Sum_probs=102.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-cc--cc---cccccccCCCCccEEEEcCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG-EA--LH---FEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~-~~--~~---~~~l~~~~~~~~divInatp~g~~  440 (518)
                      +++++|+|+|++|++++.+|.+.|++|++++|+.++++++++.++. ..  .+   .+++.+ ...+.|+|||++|.++.
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~-~l~~~DvVIn~a~~~~~   81 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDA-EVAKHDLVISLIPYTFH   81 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHH-HHTTSSEEEECCC--CH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHH-HHcCCcEEEECCccccc
Confidence            5789999999999999999999999999999999999988876642 11  12   222322 23578999999998764


Q ss_pred             CCCCCCCCChhhhcCCCEEEEEe-eCCCchHHHHHHHHCCCeeeccHHH-----------HHHHH------HHHHHHhcC
Q 010101          441 PNSDQSPVPKEALKAYELVFDAV-YTPRNTRLLREAAEVGATVVSGVEM-----------FIRQA------LGQFRLFTG  502 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di~-Y~P~~T~ll~~A~~~G~~~i~G~~m-----------l~~Qa------~~qf~lw~g  502 (518)
                      +.     +..+++..+..++|.+ |.|..+++++.|+++|+.+++|.+|           +++|+      +.+|++|+|
T Consensus        82 ~~-----i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~i~g~g~~pg~~~~~a~~li~q~~~~gg~i~~~~~~~G  156 (450)
T 1ff9_A           82 AT-----VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCG  156 (450)
T ss_dssp             HH-----HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEEECSCBBTTBHHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hH-----HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeEEeCCCCcCchHHHHHHHHHHHhcccCCeeeEEEEEEc
Confidence            32     3345566655566664 4677899999999999999999999           89998      778899998


Q ss_pred             CCCC
Q 010101          503 GLAP  506 (518)
Q Consensus       503 ~~~p  506 (518)
                      ..+|
T Consensus       157 ~~p~  160 (450)
T 1ff9_A          157 GLPA  160 (450)
T ss_dssp             EEEC
T ss_pred             ccCc
Confidence            7554

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=99.19  E-value=1.9e-11  Score=123.55  Aligned_cols=140  Identities=21%  Similarity=0.187  Sum_probs=108.3

Q ss_pred             CCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHH
Q 010101          328 DGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSR-GA-RVIIFNRNYERAKA  405 (518)
Q Consensus       328 ~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~-G~-~v~i~nRt~~ka~~  405 (518)
                      ++.+.|+|||..|++.+. . +.             ....+++.|||+|.+|++++.+|.+. |+ +|+++||+.+++++
T Consensus       111 ~~~lt~~rT~a~~~la~~-~-la-------------~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~  175 (312)
T 2i99_A          111 GNVITAKRTAAVSAIATK-F-LK-------------PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEK  175 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHH-H-HS-------------CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHH-H-hC-------------CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence            345888999999998872 2 32             23467999999999999999999875 88 99999999999999


Q ss_pred             HHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEE-eeCCCchHHHHHHHHCCCeeec
Q 010101          406 LADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDA-VYTPRNTRLLREAAEVGATVVS  484 (518)
Q Consensus       406 la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di-~Y~P~~T~ll~~A~~~G~~~i~  484 (518)
                      +++.++.......++.+ ...++|+||.+||.. .|     .+..++++++.+|+|+ .|.|..+.+.++++++|+.+++
T Consensus       176 l~~~~~~~~~~~~~~~e-~v~~aDiVi~atp~~-~~-----v~~~~~l~~g~~vi~~g~~~p~~~el~~~~~~~g~~~vD  248 (312)
T 2i99_A          176 FADTVQGEVRVCSSVQE-AVAGADVIITVTLAT-EP-----ILFGEWVKPGAHINAVGASRPDWRELDDELMKEAVLYVD  248 (312)
T ss_dssp             HHHHSSSCCEECSSHHH-HHTTCSEEEECCCCS-SC-----CBCGGGSCTTCEEEECCCCSTTCCSBCHHHHHHSEEEES
T ss_pred             HHHHhhCCeEEeCCHHH-HHhcCCEEEEEeCCC-Cc-----ccCHHHcCCCcEEEeCCCCCCCceeccHHHHhcCEEEEC
Confidence            99987621111223333 345689999999852 22     2444678889999998 7889889999999999999999


Q ss_pred             cHHHH
Q 010101          485 GVEMF  489 (518)
Q Consensus       485 G~~ml  489 (518)
                      +.++-
T Consensus       249 ~~~~a  253 (312)
T 2i99_A          249 SQEAA  253 (312)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            98753

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=99.15  E-value=5.2e-11  Score=120.90  Aligned_cols=135  Identities=16%  Similarity=0.113  Sum_probs=104.0

Q ss_pred             CCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHH
Q 010101          328 DGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKS-RGA-RVIIFNRNYERAKA  405 (518)
Q Consensus       328 ~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~-~G~-~v~i~nRt~~ka~~  405 (518)
                      ++.+.|+||++.|++.+..  +.             ....++++|||+|++|++.+.+|.. .+. +|+|+||+.+++++
T Consensus       101 ~~~lt~~RTaa~s~laa~~--la-------------~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~  165 (322)
T 1omo_A          101 ATYTTSLRTGAAGGIAAKY--LA-------------RKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKK  165 (322)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--HS-------------CTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHh--cc-------------CCCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHH
Confidence            3457889999999888742  32             1246799999999999999999987 466 89999999999999


Q ss_pred             HHHHhcC---cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEE-eeCCCchHHHHHHHHCCCe
Q 010101          406 LADAVSG---EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDA-VYTPRNTRLLREAAEVGAT  481 (518)
Q Consensus       406 la~~~~~---~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di-~Y~P~~T~ll~~A~~~G~~  481 (518)
                      +++.++.   ... ++++.+ .. ++|+||+|||.+. |     .+..++++++..|+|+ .|.|..+.+-.+..+++..
T Consensus       166 la~~~~~~~~~~~-~~~~~e-~v-~aDvVi~aTp~~~-p-----v~~~~~l~~G~~V~~ig~~~p~~~el~~~~~~~a~v  236 (322)
T 1omo_A          166 FVSYCEDRGISAS-VQPAEE-AS-RCDVLVTTTPSRK-P-----VVKAEWVEEGTHINAIGADGPGKQELDVEILKKAKI  236 (322)
T ss_dssp             HHHHHHHTTCCEE-ECCHHH-HT-SSSEEEECCCCSS-C-----CBCGGGCCTTCEEEECSCCSTTCCCBCHHHHHTEEE
T ss_pred             HHHHHHhcCceEE-ECCHHH-Hh-CCCEEEEeeCCCC-c-----eecHHHcCCCeEEEECCCCCCCccccCHHHHhcCeE
Confidence            9998763   222 444444 45 7999999999653 2     2456788999999999 8999887776666666667


Q ss_pred             eeccH
Q 010101          482 VVSGV  486 (518)
Q Consensus       482 ~i~G~  486 (518)
                      +++-.
T Consensus       237 ~vD~~  241 (322)
T 1omo_A          237 VVDDL  241 (322)
T ss_dssp             EESCH
T ss_pred             EECCH
Confidence            77754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.11  E-value=2.3e-10  Score=114.59  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=95.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.+++++|+|+|++|++++..|...|++|++++|+.++.+.+. .++....+++++.+ ...++|+||+++|.++...
T Consensus       151 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~~~~~l~~-~l~~aDvVi~~~p~~~i~~  228 (293)
T 3d4o_A          151 FTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-EMGMEPFHISKAAQ-ELRDVDVCINTIPALVVTA  228 (293)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTSEEEEGGGHHH-HTTTCSEEEECCSSCCBCH
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HCCCeecChhhHHH-HhcCCCEEEECCChHHhCH
Confidence            357899999999999999999999999999999999998876554 45544333444444 4567999999999765321


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeee--ccHHHHH
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVV--SGVEMFI  490 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i--~G~~ml~  490 (518)
                         .  ....++++.+++|+.+.|..|++ +.+++.|+.++  +|+.+.+
T Consensus       229 ---~--~l~~mk~~~~lin~ar~~~~~~~-~~a~~~Gv~~~~~~~l~~~v  272 (293)
T 3d4o_A          229 ---N--VLAEMPSHTFVIDLASKPGGTDF-RYAEKRGIKALLVPGLPGIV  272 (293)
T ss_dssp             ---H--HHHHSCTTCEEEECSSTTCSBCH-HHHHHHTCEEEECCCHHHHH
T ss_pred             ---H--HHHhcCCCCEEEEecCCCCCCCH-HHHHHCCCEEEECCCCCccc
Confidence               0  12346788999999999999988 89999999875  9999998

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=99.01  E-value=1.4e-10  Score=118.93  Aligned_cols=140  Identities=13%  Similarity=0.077  Sum_probs=103.0

Q ss_pred             CCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCHHHHHH
Q 010101          328 DGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAK-SRGA-RVIIFNRNYERAKA  405 (518)
Q Consensus       328 ~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~-~~G~-~v~i~nRt~~ka~~  405 (518)
                      ++.|.|+|||+.|++.+..  +.             ....++++|||+|++|++.+.+|. ..+. +|+|+||+.+++++
T Consensus       105 ~~~lT~~RTaa~s~laa~~--la-------------~~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~  169 (350)
T 1x7d_A          105 LTIATALRTAATSLMAAQA--LA-------------RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAK  169 (350)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--HS-------------CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHH
T ss_pred             CCEEEeehhhHHHHHHHHH--hc-------------cccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence            4568899999999998853  32             124689999999999999999885 4566 99999999999999


Q ss_pred             HHHHhcC----cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEe-eCCCchHHHHHHHHCCC
Q 010101          406 LADAVSG----EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAV-YTPRNTRLLREAAEVGA  480 (518)
Q Consensus       406 la~~~~~----~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~-Y~P~~T~ll~~A~~~G~  480 (518)
                      +++.+..    .....+++.+ ...++|+||+|||.++.    ...+..++++++..|.++- |.|....+-.+..+++.
T Consensus       170 la~~~~~~~g~~~~~~~~~~e-av~~aDiVi~aTps~~~----~pvl~~~~l~~G~~V~~vgs~~p~~~El~~~~~~~a~  244 (350)
T 1x7d_A          170 LIANLKEYSGLTIRRASSVAE-AVKGVDIITTVTADKAY----ATIITPDMLEPGMHLNAVGGDCPGKTELHADVLRNAR  244 (350)
T ss_dssp             HHHHHTTCTTCEEEECSSHHH-HHTTCSEEEECCCCSSE----EEEECGGGCCTTCEEEECSCCBTTBEEECHHHHHTSE
T ss_pred             HHHHHHhccCceEEEeCCHHH-HHhcCCEEEEeccCCCC----CceecHHHcCCCCEEEECCCCCCCceeeCHHHHhcCc
Confidence            9998742    1212233333 34578999999998631    1124567888999999985 45766555566667777


Q ss_pred             eeeccHH
Q 010101          481 TVVSGVE  487 (518)
Q Consensus       481 ~~i~G~~  487 (518)
                      .+++-.+
T Consensus       245 v~vD~~~  251 (350)
T 1x7d_A          245 VFVEYEP  251 (350)
T ss_dssp             EEESSHH
T ss_pred             EEECCHH
Confidence            8888654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.94  E-value=6.8e-10  Score=98.94  Aligned_cols=97  Identities=21%  Similarity=0.249  Sum_probs=76.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQS  446 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~  446 (518)
                      +++++|+|+|++|++++..|...|++|++++|+.++++++++.++.....++++.+ ...++|+||+|||.+. +     
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~Divi~at~~~~-~-----   93 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDS-LIKNNDVIITATSSKT-P-----   93 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHH-HHHTCSEEEECSCCSS-C-----
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHH-HhcCCCEEEEeCCCCC-c-----
Confidence            78999999999999999999999999999999999999999998754434444433 3456899999998762 2     


Q ss_pred             CCChhhhcCCCEEEEEeeCCCchH
Q 010101          447 PVPKEALKAYELVFDAVYTPRNTR  470 (518)
Q Consensus       447 ~~~~~~l~~~~~v~Di~Y~P~~T~  470 (518)
                      .+..++++++.+++|+...+..++
T Consensus        94 ~~~~~~l~~g~~vid~~~p~~~~~  117 (144)
T 3oj0_A           94 IVEERSLMPGKLFIDLGNPPNIER  117 (144)
T ss_dssp             SBCGGGCCTTCEEEECCSSCSBCC
T ss_pred             EeeHHHcCCCCEEEEccCCccCCC
Confidence            245577888999999976433343

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.77  E-value=3.1e-08  Score=97.03  Aligned_cols=205  Identities=13%  Similarity=0.153  Sum_probs=128.7

Q ss_pred             EEEecC-CCCcccCHHHHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHHHhcccccChhh
Q 010101          240 FGLVSN-PVGHSKGPILHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPAVACCDEVHPLA  313 (518)
Q Consensus       240 ~~liG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  313 (518)
                      .-++|+ |-+++.- ..-.++.++.|+ .....++-    +++.+.++.+ .++++.|+-|-.|+-..+    |   + -
T Consensus        32 vilvg~dpaS~~Yv-~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~i----d---~-~  101 (276)
T 3ngx_A           32 LIQIGDNEAASIYA-RAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGF----D---Y-Y  101 (276)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTC----C---H-H
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----C---H-H
Confidence            345664 4444322 233467789999 76555543    3566666666 578999999999964221    1   1 1


Q ss_pred             hhcCceeEEEEeccCCeEEEeec-------------CHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hH
Q 010101          314 KSIGAVNTIIRRPIDGKLVGYNT-------------DCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AG  379 (518)
Q Consensus       314 ~~iGavNTi~~~~~~g~l~G~NT-------------D~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~a  379 (518)
                      +.+.+++-- ++ -|| ++-+|.             --.|++..|++.              . ++|++++|+|+|+ +|
T Consensus       102 ~v~~~I~p~-KD-VDG-~~p~n~G~l~~g~~~~~PcTp~gv~~lL~~~--------------~-l~Gk~vvVvG~s~iVG  163 (276)
T 3ngx_A          102 EIVRNIPYY-KD-VDA-LSPYNQGLIALNREFLVPATPRAVIDIMDYY--------------G-YHENTVTIVNRSPVVG  163 (276)
T ss_dssp             HHHTTSCGG-GB-TTC-CSHHHHHHHHTTCCSSCCHHHHHHHHHHHHH--------------T-CCSCEEEEECCCTTTH
T ss_pred             HHHhhCCCC-Cc-ccC-CCccchhhhhcCCCCCCCCcHHHHHHHHHHh--------------C-cCCCEEEEEcCChHHH
Confidence            122222211 00 022 111111             126777776641              2 7899999999998 89


Q ss_pred             HHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEE
Q 010101          380 RALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELV  459 (518)
Q Consensus       380 raia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v  459 (518)
                      +.++..|...|+.|++++|+....+                 + ...++|+||+|++.   |.    .+..++++++.+|
T Consensus       164 ~plA~lL~~~gAtVtv~~~~t~~L~-----------------~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavV  218 (276)
T 3ngx_A          164 RPLSMMLLNRNYTVSVCHSKTKDIG-----------------S-MTRSSKIVVVAVGR---PG----FLNREMVTPGSVV  218 (276)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCSCHH-----------------H-HHHHSSEEEECSSC---TT----CBCGGGCCTTCEE
T ss_pred             HHHHHHHHHCCCeEEEEeCCcccHH-----------------H-hhccCCEEEECCCC---Cc----cccHhhccCCcEE
Confidence            9999999999999999998532221                 1 23458999999974   22    3778899999999


Q ss_pred             EEEeeCC------CchHHHHHHHH-CCCe-eec-cHH-----HHHHHHHHHHH
Q 010101          460 FDAVYTP------RNTRLLREAAE-VGAT-VVS-GVE-----MFIRQALGQFR  498 (518)
Q Consensus       460 ~Di~Y~P------~~T~ll~~A~~-~G~~-~i~-G~~-----ml~~Qa~~qf~  498 (518)
                      +|+.++|      .+..| ..+++ .++- -++ |.+     ||+.+-+.+.+
T Consensus       219 IDvgi~~~~gkl~GDVdf-~~v~~~a~~iTPVPGGVGpmT~a~Ll~n~v~a~~  270 (276)
T 3ngx_A          219 IDVGINYVNDKVVGDANF-EDLSEYVEAITPVPGGVGPITATNILENVVKAAE  270 (276)
T ss_dssp             EECCCEEETTEEECSBCH-HHHHTTSSEECCTTTSSHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCccCCceeccccH-HHHhhhceEeCCCCCcChHHHHHHHHHHHHHHHH
Confidence            9999987      35666 44444 4432 223 544     77777766654

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.47  E-value=7.1e-08  Score=96.94  Aligned_cols=227  Identities=15%  Similarity=0.107  Sum_probs=128.1

Q ss_pred             HHHHHHHHcCCCceEEecccC-cHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccChh--hhhcCceeEEE---E-
Q 010101          255 LHNPAFRHTRFNGIYVPMLVD-DVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHPL--AKSIGAVNTII---R-  324 (518)
Q Consensus       255 ~hn~~f~~~gl~~~y~~~~~~-~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~--A~~iGavNTi~---~-  324 (518)
                      .-.+..++.|++.....++-+ ++.+.++.+ .++++.|+-|-.|.-..+  -..++.++|.  +.-..-.|.=.   . 
T Consensus        56 ~k~k~~~~~Gi~~~~~~l~~~~~l~~~i~~lN~d~~v~GIlvqlPlp~~~~~~~i~~~I~p~KDVDG~~~~n~g~l~~~~  135 (320)
T 1edz_A           56 WTQKTSESMGFRYDLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNV  135 (320)
T ss_dssp             HHHHHHHHHTCEEEEEECSSGGGHHHHHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTSCTTTBTTCCSHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCEEEEEECCChHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCcCChhhhHHHhcCC
Confidence            334678899998776666554 487888777 688999999999974221  1112222111  00000111000   0 


Q ss_pred             ---eccCCeEEEe-ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchh-HHHHHHHHHHCCCeEEEEeCC
Q 010101          325 ---RPIDGKLVGY-NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGA-GRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       325 ---~~~~g~l~G~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~-araia~~L~~~G~~v~i~nRt  399 (518)
                         .+ .+.-.++ ---..|++..|++. .-.   |+.-+...+++|++++|+|+|.+ |+.++..|...|++|+++||+
T Consensus       136 ~~l~~-~~~~~~~~PcTp~a~v~ll~~~-~~~---~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          136 RYLDK-ENRLKSILPCTPLAIVKILEFL-KIY---NNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             CBSSS-SSCSBCCCCHHHHHHHHHHHHT-TCS---CTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             ccccc-cccCCCcCCCcHHHHHHHHHhh-ccc---ccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence               00 0000000 00135556655431 000   00000114788999999999985 999999999999999999998


Q ss_pred             HHHHHHHHHHhcCccccc--------ccccccCCCCccEEEEcCCCCCCCCCCCCC-CChhhhcCCCEEEEEeeCCCchH
Q 010101          400 YERAKALADAVSGEALHF--------EYLHEFFPEKGMILANASAIGMEPNSDQSP-VPKEALKAYELVFDAVYTPRNTR  470 (518)
Q Consensus       400 ~~ka~~la~~~~~~~~~~--------~~l~~~~~~~~divInatp~g~~~~~~~~~-~~~~~l~~~~~v~Di~Y~P~~T~  470 (518)
                      ..+..+.++.++....+.        +++.+ ...++|+||+||+..   .    + +..++++++.+++|+...+.-- 
T Consensus       211 ~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e-~l~~ADIVIsAtg~p---~----~vI~~e~vk~GavVIDVgi~rD~d-  281 (320)
T 1edz_A          211 NIQKFTRGESLKLNKHHVEDLGEYSEDLLKK-CSLDSDVVITGVPSE---N----YKFPTEYIKEGAVCINFACTKNFS-  281 (320)
T ss_dssp             EEEEEESCCCSSCCCCEEEEEEECCHHHHHH-HHHHCSEEEECCCCT---T----CCBCTTTSCTTEEEEECSSSCCBC-
T ss_pred             hHHHHhHHHHHhhhcccccccccccHhHHHH-HhccCCEEEECCCCC---c----ceeCHHHcCCCeEEEEcCCCcccc-
Confidence            443322222332221111        44544 456799999999752   1    3 6778889999999998764210 


Q ss_pred             HHHHHHH-CCCeeeccH-----HHHHHHHHHHHH
Q 010101          471 LLREAAE-VGATVVSGV-----EMFIRQALGQFR  498 (518)
Q Consensus       471 ll~~A~~-~G~~~i~G~-----~ml~~Qa~~qf~  498 (518)
                        ..+++ .++ +.++.     .||+...+.+++
T Consensus       282 --~~v~~~a~~-itPvVGpmT~a~Ll~n~~~a~~  312 (320)
T 1edz_A          282 --DDVKEKASL-YVPMTGKVTIAMLLRNMLRLVR  312 (320)
T ss_dssp             --GGGGTTEEE-EESCCHHHHHHHHHHHHHHHHH
T ss_pred             --hhHHhhCCe-eCCCccHHHHHHHHHHHHHHHH
Confidence              12222 232 33433     488877777655

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.46  E-value=1.5e-06  Score=86.06  Aligned_cols=222  Identities=20%  Similarity=0.224  Sum_probs=132.8

Q ss_pred             EEEecC-CCCcccCHHHHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHH----HHhccccc
Q 010101          240 FGLVSN-PVGHSKGPILHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEP----AVACCDEV  309 (518)
Q Consensus       240 ~~liG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~----v~~~~d~~  309 (518)
                      .-++|+ |-+++-- ..-.++.++.|++.....++-    +++.+.++.+ .++++.|+-|-.|+-..    --..++.+
T Consensus        40 vilvG~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I  118 (301)
T 1a4i_A           40 ILQVGNRDDSNLYI-NVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAI  118 (301)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTS
T ss_pred             EEEeCCChhHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhcc
Confidence            345663 3443322 233366788999877666543    2577777777 58899999999987321    11111111


Q ss_pred             Chh--hhhcCceeEEEEeccCCeE-EEe-ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHH
Q 010101          310 HPL--AKSIGAVNTIIRRPIDGKL-VGY-NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAF  384 (518)
Q Consensus       310 ~~~--A~~iGavNTi~~~~~~g~l-~G~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~  384 (518)
                      +|.  +.-+.-.|.=..-  .|.. -++ -.--.|++..|++     .+        .+++|++++|+|+|. +|+.++.
T Consensus       119 ~p~KDVDG~hp~N~G~l~--~g~~~~~~~PcTp~gi~~ll~~-----~~--------i~l~gk~vvVIG~s~iVG~p~A~  183 (301)
T 1a4i_A          119 APEKDVDGLTSINAGRLA--RGDLNDCFIPCTPKGCLELIKE-----TG--------VPIAGRHAVVVGRSKIVGAPMHD  183 (301)
T ss_dssp             CGGGBTTCCSHHHHHHHH--TTCCSSCCCCHHHHHHHHHHHT-----TT--------CCCTTCEEEEECCCTTTHHHHHH
T ss_pred             CCCCCccCCChhhHHHHh--cCCCCCCccCchHHHHHHHHHH-----cC--------CCCCCCEEEEECCCchHHHHHHH
Confidence            111  0000111110000  0000 000 0125566666543     12        578999999999997 7999999


Q ss_pred             HHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEee
Q 010101          385 GAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVY  464 (518)
Q Consensus       385 ~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y  464 (518)
                      .|...|+.|++++++..                 ++.+ ...++|+||+|++.   |.    .+..++++++.+|+|+..
T Consensus       184 lL~~~gAtVtv~hs~t~-----------------~L~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavVIDVgi  238 (301)
T 1a4i_A          184 LLLWNNATVTTCHSKTA-----------------HLDE-EVNKGDILVVATGQ---PE----MVKGEWIKPGAIVIDCGI  238 (301)
T ss_dssp             HHHHTTCEEEEECTTCS-----------------SHHH-HHTTCSEEEECCCC---TT----CBCGGGSCTTCEEEECCC
T ss_pred             HHHhCCCeEEEEECCcc-----------------cHHH-HhccCCEEEECCCC---cc----cCCHHHcCCCcEEEEccC
Confidence            99999999999986532                 2222 34568999999975   22    377888999999999988


Q ss_pred             CCCc-------------hHHHHHHHH-CCCe-eec-cHH-----HHHHHHHHHHHHhcCC
Q 010101          465 TPRN-------------TRLLREAAE-VGAT-VVS-GVE-----MFIRQALGQFRLFTGG  503 (518)
Q Consensus       465 ~P~~-------------T~ll~~A~~-~G~~-~i~-G~~-----ml~~Qa~~qf~lw~g~  503 (518)
                      ++..             ..| ..+++ .++- -++ |.+     ||+...+.+.+.|..+
T Consensus       239 ~~~~d~~~~~g~klvGDVdf-~~v~~~a~~iTPVPGGVGpmTiamLl~Ntv~aa~~~~~~  297 (301)
T 1a4i_A          239 NYVPDDKKPNGRKVVGDVAY-DEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLEK  297 (301)
T ss_dssp             BC----------CCBCSBCH-HHHTTTCSEECCSSSSHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCcccccccCCCeeeccccH-HHhhhhceEeCCCCCCccHHHHHHHHHHHHHHHHHHhhc
Confidence            7532             233 33333 3432 122 654     9999999888877654

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.45  E-value=6.6e-07  Score=88.19  Aligned_cols=215  Identities=18%  Similarity=0.211  Sum_probs=134.5

Q ss_pred             EEEecC-CCCcccCHHHHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchH-----HHHhcccc
Q 010101          240 FGLVSN-PVGHSKGPILHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKE-----PAVACCDE  308 (518)
Q Consensus       240 ~~liG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~-----~v~~~~d~  308 (518)
                      .-++|+ |-+++.- ..-.++.++.|+......++-    +++.+.++.+ .++++.|+-|-.|.-.     .++..+  
T Consensus        38 vilvG~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I--  114 (288)
T 1b0a_A           38 VVLVGSNPASQIYV-ASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERI--  114 (288)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTS--
T ss_pred             EEEeCCChhHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcc--
Confidence            345563 3333322 233466788999876555532    3566777777 5788999999999732     222221  


Q ss_pred             cChh--hhhcCceeEEEEeccCCeE-EEe----ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHH
Q 010101          309 VHPL--AKSIGAVNTIIRRPIDGKL-VGY----NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGR  380 (518)
Q Consensus       309 ~~~~--A~~iGavNTi~~~~~~g~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~ar  380 (518)
                       +|.  +.-+.-.|.       |++ .|.    -.--.|++..|++     .+        .+++|++++|+|+|+ .|+
T Consensus       115 -~p~KDVDG~~p~n~-------g~l~~g~~~~~PcTp~gi~~ll~~-----~~--------i~l~gk~vvVIG~s~iVG~  173 (288)
T 1b0a_A          115 -HPDKDVDGFHPYNV-------GRLCQRAPRLRPCTPRGIVTLLER-----YN--------IDTFGLNAVVIGASNIVGR  173 (288)
T ss_dssp             -CTTTCTTCCSHHHH-------HHHHTTCCSSCCHHHHHHHHHHHH-----TT--------CCCTTCEEEEECCCTTTHH
T ss_pred             -CCccCcccCCccch-------hHHhCCCCCCCCCcHHHHHHHHHH-----cC--------CCCCCCEEEEECCChHHHH
Confidence             110  000000110       000 010    0124566666554     12        578999999999998 699


Q ss_pred             HHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEE
Q 010101          381 ALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVF  460 (518)
Q Consensus       381 aia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~  460 (518)
                      .++..|...|+.|++++++....+                 + ...++|+||+|++.   |.    .+..++++++.+|+
T Consensus       174 p~A~lL~~~gAtVtv~hs~t~~L~-----------------~-~~~~ADIVI~Avg~---p~----lI~~~~vk~GavVI  228 (288)
T 1b0a_A          174 PMSMELLLAGCTTTVTHRFTKNLR-----------------H-HVENADLLIVAVGK---PG----FIPGDWIKEGAIVI  228 (288)
T ss_dssp             HHHHHHHTTTCEEEEECSSCSCHH-----------------H-HHHHCSEEEECSCC---TT----CBCTTTSCTTCEEE
T ss_pred             HHHHHHHHCCCeEEEEeCCchhHH-----------------H-HhccCCEEEECCCC---cC----cCCHHHcCCCcEEE
Confidence            999999999999999987643221                 1 23458999999974   22    37778889999999


Q ss_pred             EEeeCC-------CchHHHHHHHHCCCe-eec-cH-----HHHHHHHHHHHHHhcCC
Q 010101          461 DAVYTP-------RNTRLLREAAEVGAT-VVS-GV-----EMFIRQALGQFRLFTGG  503 (518)
Q Consensus       461 Di~Y~P-------~~T~ll~~A~~~G~~-~i~-G~-----~ml~~Qa~~qf~lw~g~  503 (518)
                      |+..++       .+..|-...+..++- -++ |.     .||+.+.+.+.+.|...
T Consensus       229 DVgi~r~~~g~l~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~~~  285 (288)
T 1b0a_A          229 DVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDP  285 (288)
T ss_dssp             ECCCEECTTSCEECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             EccCCccCCCCccCCcCHHHHhhhccEecCCCCCccHHHHHHHHHHHHHHHHHhhcc
Confidence            998775       245564444556653 233 44     49999999998887654

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.42  E-value=8.4e-08  Score=98.81  Aligned_cols=126  Identities=21%  Similarity=0.253  Sum_probs=90.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccc---cccccccCCCCccEEEEcCCCCCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH---FEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~---~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      +..||+|+|||.+|+.++..|++ ..+|++++|+.++++++.+......++   .+.+.+ .+.++|+||||+|.-+.+ 
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~-~~~~~DvVi~~~p~~~~~-   91 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVE-VMKEFELVIGALPGFLGF-   91 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHH-HHTTCSEEEECCCGGGHH-
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHH-HHhCCCEEEEecCCcccc-
Confidence            34589999999999999999865 469999999999988775433211112   223333 356789999999864321 


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCc-hHHHHHHHHCCCeeecc------H-HHHHHHHHHHHH
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRN-TRLLREAAEVGATVVSG------V-EMFIRQALGQFR  498 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~-T~ll~~A~~~G~~~i~G------~-~ml~~Qa~~qf~  498 (518)
                          ++...++..+.-++|+.|.+.. -.+-+.|+++|+.+++|      + .|+..++..++.
T Consensus        92 ----~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~~~~a~~~~~~~~  151 (365)
T 3abi_A           92 ----KSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAGFAPGLSNILMGRIFQELD  151 (365)
T ss_dssp             ----HHHHHHHHHTCEEEECCCCSSCGGGGHHHHHHTTCEEECCCBTTTBHHHHHHHHHHHHSC
T ss_pred             ----hHHHHHHhcCcceEeeeccchhhhhhhhhhccCCceeeecCCCCCchHHHHHHHHHHhcc
Confidence                2445677788889999998654 46778899999887764      3 377887777763

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.36  E-value=9.5e-08  Score=99.87  Aligned_cols=113  Identities=17%  Similarity=0.240  Sum_probs=80.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHhcC------cc--ccc---ccccccCCC--CccEE
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRG---ARVIIFNRNYERAKALADAVSG------EA--LHF---EYLHEFFPE--KGMIL  431 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G---~~v~i~nRt~~ka~~la~~~~~------~~--~~~---~~l~~~~~~--~~div  431 (518)
                      ++++|+|+|++|++++..|++.|   .+|++++|+.++++++++.++.      ..  .++   +++.+ .+.  +.|+|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~-~l~~~~~DvV   80 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVA-LINEVKPQIV   80 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHH-HHHHHCCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHH-HHHhhCCCEE
Confidence            47999999999999999999988   3899999999999999988752      11  111   12222 122  37999


Q ss_pred             EEcCCCCCCCCCCCCCCChhhhcCCCEEEEE-eeCCC-ch--------HHHHHHHHCCCeeeccH
Q 010101          432 ANASAIGMEPNSDQSPVPKEALKAYELVFDA-VYTPR-NT--------RLLREAAEVGATVVSGV  486 (518)
Q Consensus       432 Inatp~g~~~~~~~~~~~~~~l~~~~~v~Di-~Y~P~-~T--------~ll~~A~~~G~~~i~G~  486 (518)
                      ||+++....     .++...++..+.-++|+ .|.|. .+        .+.+.|+++|+.++.|.
T Consensus        81 in~ag~~~~-----~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~  140 (405)
T 4ina_A           81 LNIALPYQD-----LTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGS  140 (405)
T ss_dssp             EECSCGGGH-----HHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECC
T ss_pred             EECCCcccC-----hHHHHHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcC
Confidence            999975321     12334566667778997 45544 22        78899999999877654

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.32  E-value=4.9e-07  Score=91.10  Aligned_cols=112  Identities=20%  Similarity=0.173  Sum_probs=78.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhc----CcccccccccccCCCCccEEEEcCCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKS-RGA-RVIIFNRNYERAKALADAVS----GEALHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~-~G~-~v~i~nRt~~ka~~la~~~~----~~~~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      ..++++|||+|.+|++.+.+|.. .+. +|+|+||+  +++++++++.    ...... ++.+ ...++|+||+|||.+ 
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~e-av~~aDIVi~aT~s~-  194 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APAD-IAAQADIVVTATRST-  194 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHH-HHHHCSEEEECCCCS-
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHH-HHhhCCEEEEccCCC-
Confidence            35899999999999999999986 466 99999999  8888887653    322122 3333 345689999999975 


Q ss_pred             CCCCCCCCCChhhhcCCCEEEEEee-CCCchHHHHHHHHCC-CeeeccHH
Q 010101          440 EPNSDQSPVPKEALKAYELVFDAVY-TPRNTRLLREAAEVG-ATVVSGVE  487 (518)
Q Consensus       440 ~~~~~~~~~~~~~l~~~~~v~Di~Y-~P~~T~ll~~A~~~G-~~~i~G~~  487 (518)
                      .|     .+..++++++..|.|+-. .|....+-.+..+++ ..+++-.+
T Consensus       195 ~p-----vl~~~~l~~G~~V~~vGs~~p~~~El~~~~~~~a~~v~vD~~~  239 (313)
T 3hdj_A          195 TP-----LFAGQALRAGAFVGAIGSSLPHTRELDDEALRRARAVVVEWRE  239 (313)
T ss_dssp             SC-----SSCGGGCCTTCEEEECCCSSTTCCCCCHHHHHHCSEEEESCHH
T ss_pred             Cc-----ccCHHHcCCCcEEEECCCCCCchhhcCHHHHhcCCEEEECCHH
Confidence            23     245678999999999954 575443333444444 45677544

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.30  E-value=1.5e-05  Score=81.86  Aligned_cols=136  Identities=14%  Similarity=0.148  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccc
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF  417 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~  417 (518)
                      +.|...+++..+....|       ..+++||+++|+|+|.+|+.++..|.+.|++|+++||+.+++++++++++...++.
T Consensus       151 g~GV~~~~~~~~~~~~G-------~~~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~  223 (364)
T 1leh_A          151 AYGVYRGMKAAAKEAFG-------SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAP  223 (364)
T ss_dssp             HHHHHHHHHHHHHHHHS-------SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCG
T ss_pred             hhHHHHHHHHHHHhhcc-------ccCCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEECh
Confidence            45666666554443222       12689999999999999999999999999999999999999999999987655544


Q ss_pred             ccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCch-HHHHHHHHCCCeeeccHHHH
Q 010101          418 EYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNT-RLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       418 ~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T-~ll~~A~~~G~~~i~G~~ml  489 (518)
                      +++-   ..++|++|.|...+.   .+..  ....+ +..+|.+..-.|..+ ...+..+++|+.++++.-.-
T Consensus       224 ~~ll---~~~~DIvip~a~~~~---I~~~--~~~~l-g~~iV~e~An~p~t~~ea~~~L~~~Gi~~~Pd~~~N  287 (364)
T 1leh_A          224 NAIY---GVTCDIFAPCALGAV---LNDF--TIPQL-KAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVIN  287 (364)
T ss_dssp             GGTT---TCCCSEEEECSCSCC---BSTT--HHHHC-CCSEECCSCSCCBSSHHHHHHHHHHTCEECCHHHHT
T ss_pred             HHHh---ccCCcEeeccchHHH---hCHH--HHHhC-CCcEEEeCCCCCcccHHHHHHHHhCCCEEecceeec
Confidence            4432   246899998753221   1111  11223 345666666666544 56677788999888776544

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.23  E-value=1.5e-06  Score=85.31  Aligned_cols=207  Identities=18%  Similarity=0.254  Sum_probs=125.6

Q ss_pred             EEEecC-CCCcccCHHHHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchH-----HHHhcccc
Q 010101          240 FGLVSN-PVGHSKGPILHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKE-----PAVACCDE  308 (518)
Q Consensus       240 ~~liG~-pi~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~-----~v~~~~d~  308 (518)
                      .-++|+ |-+++.- ..-.+..++.|+......++-    +++.+.++.+ .++++.|+-|-.|.-.     .++..+  
T Consensus        37 vilvg~dpas~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I--  113 (281)
T 2c2x_A           37 TILVGDDPGSQAYV-RGKHADCAKVGITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERV--  113 (281)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHS--
T ss_pred             EEEeCCChhhHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhc--
Confidence            345563 3333322 233467788999877666653    3566677767 5889999999999732     222111  


Q ss_pred             cChhhhhc---CceeEEEEeccCCeE-EE---e-ecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchh-H
Q 010101          309 VHPLAKSI---GAVNTIIRRPIDGKL-VG---Y-NTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGA-G  379 (518)
Q Consensus       309 ~~~~A~~i---GavNTi~~~~~~g~l-~G---~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~-a  379 (518)
                       +|. |-+   .-.|.       |++ .|   + -.--.|++..|++     .+        .+++||+++|+|+|.+ |
T Consensus       114 -~p~-KDVDG~~p~n~-------g~l~~g~~~~~PcTp~gi~~ll~~-----~~--------i~l~gk~vvVvG~s~iVG  171 (281)
T 2c2x_A          114 -DPA-KDADGLHPTNL-------GRLVLGTPAPLPCTPRGIVHLLRR-----YD--------ISIAGAHVVVIGRGVTVG  171 (281)
T ss_dssp             -CGG-GBTTSCCHHHH-------HHHHHTCCCCCCHHHHHHHHHHHH-----TT--------CCCTTCEEEEECCCTTTH
T ss_pred             -Ccc-CCccCCChhhH-------HHHhCCCCCCCCChHHHHHHHHHH-----cC--------CCCCCCEEEEECCCcHHH
Confidence             111 000   00110       000 00   0 0124556665543     12        5789999999999985 9


Q ss_pred             HHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCC
Q 010101          380 RALAFGAKSR--GARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYE  457 (518)
Q Consensus       380 raia~~L~~~--G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~  457 (518)
                      +.++..|...  |+.|++++|+.+.                 +.+ ...++|+||+|++.   |.    .+..++++++.
T Consensus       172 ~p~A~lL~~~g~~atVtv~h~~t~~-----------------L~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~Ga  226 (281)
T 2c2x_A          172 RPLGLLLTRRSENATVTLCHTGTRD-----------------LPA-LTRQADIVVAAVGV---AH----LLTADMVRPGA  226 (281)
T ss_dssp             HHHHHHHTSTTTCCEEEEECTTCSC-----------------HHH-HHTTCSEEEECSCC---TT----CBCGGGSCTTC
T ss_pred             HHHHHHHhcCCCCCEEEEEECchhH-----------------HHH-HHhhCCEEEECCCC---Cc----ccCHHHcCCCc
Confidence            9999999999  7899999987522                 222 33568999999974   22    37788899999


Q ss_pred             EEEEEeeCCC------chHHHHHHHH-CCCe-eec-cHH-----HHHHHHHHHHH
Q 010101          458 LVFDAVYTPR------NTRLLREAAE-VGAT-VVS-GVE-----MFIRQALGQFR  498 (518)
Q Consensus       458 ~v~Di~Y~P~------~T~ll~~A~~-~G~~-~i~-G~~-----ml~~Qa~~qf~  498 (518)
                      +|+|+..++.      +..  ..+++ .++- -++ |.+     ||+.+.+.+.+
T Consensus       227 vVIDVgi~r~~~glvGDVd--~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~aa~  279 (281)
T 2c2x_A          227 AVIDVGVSRTDDGLVGDVH--PDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAE  279 (281)
T ss_dssp             EEEECCEEEETTEEEESBC--GGGGGTCSEEECSSSSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCCCCCccCccc--cchhhheeeecCCCCCccHHHHHHHHHHHHHHHH
Confidence            9999987752      232  33333 3432 233 543     77777666654

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=98.20  E-value=3.4e-07  Score=98.82  Aligned_cols=82  Identities=20%  Similarity=0.219  Sum_probs=60.3

Q ss_pred             CCeEEEeecCHHHHHHHHHHHHHh---------hccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEE-
Q 010101          328 DGKLVGYNTDCESAISAIEDALRE---------RQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIF-  396 (518)
Q Consensus       328 ~g~l~G~NTD~~G~~~~l~~~l~~---------~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~-  396 (518)
                      +|++.|+|||+.|++..++-....         +.--  +...-..+++++|+|+|+||.|.+++.+|+..|+ +|+|+ 
T Consensus       281 ~Gkl~g~~tD~~g~l~~~~la~~~~~lnL~lmrwrll--~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD  358 (598)
T 3vh1_A          281 QGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRIL--PDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVD  358 (598)
T ss_dssp             TSSSSCEEEECHHHHCHHHHHHHHHHHHHHHHHHHHC--TTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCCCcceeecchhccCHHHHHHHHHhhhhhhhhhhcc--chhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            789999999999999988611000         0000  0000134678999999999999999999999999 99999 


Q ss_pred             ---------eCCH---------HHHHHHHHHhc
Q 010101          397 ---------NRNY---------ERAKALADAVS  411 (518)
Q Consensus       397 ---------nRt~---------~ka~~la~~~~  411 (518)
                               +|..         .||+.+++.+.
T Consensus       359 ~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~  391 (598)
T 3vh1_A          359 NGTVSYSNPVRQALYNFEDCGKPKAELAAASLK  391 (598)
T ss_dssp             CSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHH
T ss_pred             CCcccccccccccccchhhcCcHHHHHHHHHHH
Confidence                     4543         68888887764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.19  E-value=6.5e-07  Score=75.65  Aligned_cols=70  Identities=16%  Similarity=0.077  Sum_probs=52.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhcCccc--cc---ccccccCCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNYERAKALADAVSGEAL--HF---EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G-~~v~i~nRt~~ka~~la~~~~~~~~--~~---~~l~~~~~~~~divInatp~  437 (518)
                      .+++++|+|+|++|++++..|.+.| ++|++++|+.++++.+. ..+....  ++   +++.+ ...++|+||+++|.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~~~~~~-~~~~~d~vi~~~~~   79 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDEAGLAK-ALGGFDAVISAAPF   79 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCHHHHHH-HTTTCSEEEECSCG
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCHHHHHH-HHcCCCEEEECCCc
Confidence            3578999999999999999999999 59999999999988776 2222211  11   12222 24578999999853

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.13  E-value=1.5e-05  Score=81.73  Aligned_cols=190  Identities=15%  Similarity=0.142  Sum_probs=112.3

Q ss_pred             HHHH-cCCCceEEecccCcHHHHHHHhc--CCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCeEEEee
Q 010101          259 AFRH-TRFNGIYVPMLVDDVKEFFRTYS--GTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYN  335 (518)
Q Consensus       259 ~f~~-~gl~~~y~~~~~~~l~~~~~~l~--~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l~G~N  335 (518)
                      +|+. -|+|..=+.+++.+.++|++.++  .+.|.|++.--=-..+.++.++++-..    ..            +-=+|
T Consensus       102 Lf~~~agid~~pi~ldv~~~dE~v~~vk~~~p~f~~i~lED~~~p~af~il~r~r~~----~~------------Ipvf~  165 (388)
T 1vl6_A          102 LFKAFADIDAFPICLSESEEEKIISIVKSLEPSFGGINLEDIGAPKCFRILQRLSEE----MN------------IPVFH  165 (388)
T ss_dssp             HHHHHHCCEEEEEECSCCCHHHHHHHHHHTGGGCSEEEECSCCTTHHHHHHHHHHHH----CS------------SCEEE
T ss_pred             HHHhccCCceEeEEeCCCCHHHHHHHHHHcCCcceEeCHhhcCCHHHHHHHHHhhhh----cC------------cceec
Confidence            3443 56774444456668888877663  457888765321122333333322211    11            22244


Q ss_pred             cCHHHH----HHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC----HHHH---
Q 010101          336 TDCESA----ISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN----YERA---  403 (518)
Q Consensus       336 TD~~G~----~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt----~~ka---  403 (518)
                      -|-.|-    ..++...++- .|        ..+++.+++|+|||-+|.+++..|..+|+ +|+++||+    .+|+   
T Consensus       166 DDiqGTasV~lAal~~A~~i-~g--------~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~  236 (388)
T 1vl6_A          166 DDQQGTAVVVSAAFLNALKL-TE--------KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETC  236 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HT--------CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGC
T ss_pred             cccccHHHHHHHHHHHHHHH-hC--------CCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccc
Confidence            554442    1122222221 12        36788999999999999999999999999 99999999    6664   


Q ss_pred             -----HHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhh---cCCCEEEEEee-CCCchHHHHH
Q 010101          404 -----KALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEAL---KAYELVFDAVY-TPRNTRLLRE  474 (518)
Q Consensus       404 -----~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l---~~~~~v~Di~Y-~P~~T~ll~~  474 (518)
                           +.++++.+. .....+|.+ .+.++|++|-+|..+        .+.++.+   .++.++||+.- .|+-||  ++
T Consensus       237 L~~~k~~~A~~~~~-~~~~~~L~e-av~~ADVlIG~Sap~--------l~t~emVk~Ma~~pIIfalSNPt~E~~p--~~  304 (388)
T 1vl6_A          237 LNEYHLEIARITNP-ERLSGDLET-ALEGADFFIGVSRGN--------ILKPEWIKKMSRKPVIFALANPVPEIDP--EL  304 (388)
T ss_dssp             SSHHHHHHHHTSCT-TCCCSCHHH-HHTTCSEEEECSCSS--------CSCHHHHTTSCSSCEEEECCSSSCSSCH--HH
T ss_pred             cCHHHHHHHHhhhc-cCchhhHHH-HHccCCEEEEeCCCC--------ccCHHHHHhcCCCCEEEEcCCCCCCCCH--HH
Confidence                 455655432 122344555 456789999887532        2445543   45679999973 233454  55


Q ss_pred             HHHCC-Ceeecc
Q 010101          475 AAEVG-ATVVSG  485 (518)
Q Consensus       475 A~~~G-~~~i~G  485 (518)
                      |.+.| +.+..|
T Consensus       305 a~~~g~~i~atG  316 (388)
T 1vl6_A          305 AREAGAFIVATG  316 (388)
T ss_dssp             HHHTTCSEEEES
T ss_pred             HHHhcCeEEEeC
Confidence            66666 445566

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.97  E-value=9.9e-06  Score=83.88  Aligned_cols=99  Identities=18%  Similarity=0.183  Sum_probs=69.7

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--ccc-----------------------
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFE-----------------------  418 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~-----------------------  418 (518)
                      .+.+++|+|+|+|++|++++..+..+|++|++++|+.++.+.+.+ ++....  ..+                       
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~-~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES-LGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH-TTCEECCC-----------------------CCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            357899999999999999999999999999999999988776654 765432  110                       


Q ss_pred             --cccccCCCCccEEEEcCCCCCCCCCCCCCCChh---hhcCCCEEEEEeeCC
Q 010101          419 --YLHEFFPEKGMILANASAIGMEPNSDQSPVPKE---ALKAYELVFDAVYTP  466 (518)
Q Consensus       419 --~l~~~~~~~~divInatp~g~~~~~~~~~~~~~---~l~~~~~v~Di~Y~P  466 (518)
                        .+.+ ...++|+||+|+..+..+.  +..+..+   .++++.+++|+.+.+
T Consensus       248 ~~~l~~-~~~~aDvVi~~~~~pg~~~--~~li~~~~l~~mk~g~vivdva~~~  297 (384)
T 1l7d_A          248 AEAVLK-ELVKTDIAITTALIPGKPA--PVLITEEMVTKMKPGSVIIDLAVEA  297 (384)
T ss_dssp             HHHHHH-HHTTCSEEEECCCCTTSCC--CCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHH-HhCCCCEEEECCccCCCCC--CeeeCHHHHhcCCCCCEEEEEecCC
Confidence              0222 2356899999985522221  1123333   357889999999753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.96  E-value=1.5e-05  Score=82.43  Aligned_cols=99  Identities=19%  Similarity=0.212  Sum_probs=71.1

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-c---ccccccccCCCCccEEEEcCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-L---HFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~---~~~~l~~~~~~~~divInatp~g~  439 (518)
                      .+.+++++|+|+|++|++++..+...|++|++++|+.++.+.+.+.++... .   ...++.+ ...++|+||+|++...
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~-~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEG-AVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHH-HHHHCSEEEECCCCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHH-HHcCCCEEEECCCcCC
Confidence            367899999999999999999999999999999999999888777676432 0   1222322 2346899999986543


Q ss_pred             CCCCCCCCCChh---hhcCCCEEEEEeeC
Q 010101          440 EPNSDQSPVPKE---ALKAYELVFDAVYT  465 (518)
Q Consensus       440 ~~~~~~~~~~~~---~l~~~~~v~Di~Y~  465 (518)
                      . . ....+..+   .++++.+++|+...
T Consensus       244 ~-~-t~~li~~~~l~~mk~g~~iV~va~~  270 (377)
T 2vhw_A          244 A-K-APKLVSNSLVAHMKPGAVLVDIAID  270 (377)
T ss_dssp             S-C-CCCCBCHHHHTTSCTTCEEEEGGGG
T ss_pred             C-C-CcceecHHHHhcCCCCcEEEEEecC
Confidence            2 1 11223333   35677889999753

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.93  E-value=1.5e-05  Score=81.96  Aligned_cols=98  Identities=20%  Similarity=0.197  Sum_probs=70.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccc-----------------------cccc
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF-----------------------EYLH  421 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~-----------------------~~l~  421 (518)
                      +++++|+|+|+|.+|+.++..+..+|++|++++|+.++.+.+.+ +|.....+                       +++.
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS-VGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH-TTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            56889999999999999999999999999999999999877755 55433221                       1233


Q ss_pred             ccCCCCccEEEEcCCCCCCCCCCCCCCChhh---hcCCCEEEEEeeCC
Q 010101          422 EFFPEKGMILANASAIGMEPNSDQSPVPKEA---LKAYELVFDAVYTP  466 (518)
Q Consensus       422 ~~~~~~~divInatp~g~~~~~~~~~~~~~~---l~~~~~v~Di~Y~P  466 (518)
                      + .+.++|+||+|....-.+  .+..+..+.   ++++.+++|+.-.+
T Consensus       261 e-~l~~aDIVI~tv~iPg~~--ap~Lvt~emv~~MkpGsVIVDvA~d~  305 (381)
T 3p2y_A          261 D-AITKFDIVITTALVPGRP--APRLVTAAAATGMQPGSVVVDLAGET  305 (381)
T ss_dssp             H-HHTTCSEEEECCCCTTSC--CCCCBCHHHHHTSCTTCEEEETTGGG
T ss_pred             H-HHhcCCEEEECCCCCCcc--cceeecHHHHhcCCCCcEEEEEeCCC
Confidence            3 457799999986332111  112355543   47789999997543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.90  E-value=5.7e-06  Score=83.45  Aligned_cols=113  Identities=17%  Similarity=0.187  Sum_probs=76.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      ..+++.|||+|.+|++++..|.+.|++|+++||++++++++++. +...  ..++.+ ...++|+||-++|....  ...
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~--~~~~~e-~~~~aDvVi~~vp~~~~--~~~  103 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAAL-GATI--HEQARA-AARDADIVVSMLENGAV--VQD  103 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-TCEE--ESSHHH-HHTTCSEEEECCSSHHH--HHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHC-CCEe--eCCHHH-HHhcCCEEEEECCCHHH--HHH
Confidence            45689999999999999999999999999999999999888765 3221  122222 34568999999874311  000


Q ss_pred             CCC--C-hhhhcCCCEEEEEeeCCCc-h-HHHHHHHHCCCeeec
Q 010101          446 SPV--P-KEALKAYELVFDAVYTPRN-T-RLLREAAEVGATVVS  484 (518)
Q Consensus       446 ~~~--~-~~~l~~~~~v~Di~Y~P~~-T-~ll~~A~~~G~~~i~  484 (518)
                      ...  . ...+.++.+++|+...+.. + .+.+..++.|..+++
T Consensus       104 v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~  147 (320)
T 4dll_A          104 VLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLD  147 (320)
T ss_dssp             HHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            000  1 1235678899999887543 3 333455667876653

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.85  E-value=1.1e-05  Score=80.72  Aligned_cols=115  Identities=19%  Similarity=0.128  Sum_probs=77.8

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCC-C-C
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGME-P-N  442 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~-~-~  442 (518)
                      ...+++.|||.|.+|++++..|.+.|++|+++||++++++++++. +...  ..++.+ ...++|+||.++|.... . .
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~e-~~~~aDvVi~~vp~~~~~~~v   82 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA-GAHL--CESVKA-ALSASPATIFVLLDNHATHEV   82 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH-TCEE--CSSHHH-HHHHSSEEEECCSSHHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC-CCee--cCCHHH-HHhcCCEEEEEeCCHHHHHHH
Confidence            345789999999999999999999999999999999999988765 3221  122222 23458999999985420 0 0


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCc-h-HHHHHHHHCCCeeecc
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRN-T-RLLREAAEVGATVVSG  485 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~-T-~ll~~A~~~G~~~i~G  485 (518)
                      .....+  ..+.++.+++|+...+.. + .+.+..++.|+.++++
T Consensus        83 ~~~~~l--~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda  125 (306)
T 3l6d_A           83 LGMPGV--ARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG  125 (306)
T ss_dssp             HTSTTH--HHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             hcccch--hhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec
Confidence            000011  224577899999876443 3 3445556788876654

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=97.82  E-value=6.8e-07  Score=93.88  Aligned_cols=104  Identities=17%  Similarity=0.255  Sum_probs=70.8

Q ss_pred             hhhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC
Q 010101          312 LAKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA  391 (518)
Q Consensus       312 ~A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~  391 (518)
                      ..+++|+||||+.+  +|++.|     .||...++. ..            ..+++++|+|+|+||.|..++..|+..|+
T Consensus         5 ~~~r~~~vntl~~~--~g~~~g-----~gf~~g~e~-~~------------~~L~~~~VlvvG~GGlGs~va~~La~aGv   64 (434)
T 1tt5_B            5 WEGRWNHVKKFLER--SGPFTH-----PDFEPSTES-LQ------------FLLDTCKVLVIGAGGLGCELLKNLALSGF   64 (434)
T ss_dssp             CTTTTHHHHHHHHS--CCSSCC-----TTCCCCSSH-HH------------HHHHTCCEEEECSSTHHHHHHHHHHHTTC
T ss_pred             hhhhhccceEEEcC--CCcccc-----cccccCHHH-HH------------HHhcCCEEEEECcCHHHHHHHHHHHHcCC
Confidence            45688999999987  788877     455444322 11            12356899999999999999999999999


Q ss_pred             -eEEEE----------eCCH---------HHHHHHHHHhcC--cccccc----cccc---cCCCCccEEEEcC
Q 010101          392 -RVIIF----------NRNY---------ERAKALADAVSG--EALHFE----YLHE---FFPEKGMILANAS  435 (518)
Q Consensus       392 -~v~i~----------nRt~---------~ka~~la~~~~~--~~~~~~----~l~~---~~~~~~divInat  435 (518)
                       +|+|+          ||..         .||+.+++.+..  ..+.++    .+.+   ....++|+||+|+
T Consensus        65 g~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~DlVi~~~  137 (434)
T 1tt5_B           65 RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGL  137 (434)
T ss_dssp             CCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGBCHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEecccchhhHHHhcCCCEEEECC
Confidence             99999          5542         577777766542  011111    1111   0245689999986

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.81  E-value=1.8e-05  Score=81.44  Aligned_cols=100  Identities=21%  Similarity=0.245  Sum_probs=67.3

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-c---ccccccccCCCCccEEEEcCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-L---HFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~---~~~~l~~~~~~~~divInatp~g~  439 (518)
                      .+++++++|+|+|++|++++..+...|++|++++|+.++.+.+.+.++... .   ..+++.+ ...++|+||++++...
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~-~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKK-SVQHADLLIGAVLVPG  241 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHH-HHHHCSEEEECCC---
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHH-HHhCCCEEEECCCCCc
Confidence            367899999999999999999999999999999999999888776666431 0   1222322 2346899999997542


Q ss_pred             CCCCCCCCCChh---hhcCCCEEEEEeeCC
Q 010101          440 EPNSDQSPVPKE---ALKAYELVFDAVYTP  466 (518)
Q Consensus       440 ~~~~~~~~~~~~---~l~~~~~v~Di~Y~P  466 (518)
                      ..  ....+..+   .++++.+++|+.+.+
T Consensus       242 ~~--~~~li~~~~l~~mk~gg~iV~v~~~~  269 (369)
T 2eez_A          242 AK--APKLVTRDMLSLMKEGAVIVDVAVDQ  269 (369)
T ss_dssp             ------CCSCHHHHTTSCTTCEEEECC---
T ss_pred             cc--cchhHHHHHHHhhcCCCEEEEEecCC
Confidence            11  11122332   346778899998754

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.81  E-value=5.7e-05  Score=75.52  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=74.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc-ccccccccccCCCCccEEEEcCCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE-ALHFEYLHEFFPEKGMILANASAIGMEPNSDQS  446 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~-~~~~~~l~~~~~~~~divInatp~g~~~~~~~~  446 (518)
                      ++|-+||-|-||.+++..|.+.|++|+++||++++++.+.+. +.. .-+..+    ....+|+||-+.|-+  +...+.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~-Ga~~a~s~~e----~~~~~dvv~~~l~~~--~~v~~V   76 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA-GASAARSARD----AVQGADVVISMLPAS--QHVEGL   76 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT-TCEECSSHHH----HHTTCSEEEECCSCH--HHHHHH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHc-CCEEcCCHHH----HHhcCCceeecCCch--HHHHHH
Confidence            589999999999999999999999999999999999999765 322 223333    235689999777632  110000


Q ss_pred             CCC----hhhhcCCCEEEEEeeC-CCch-HHHHHHHHCCCeeec
Q 010101          447 PVP----KEALKAYELVFDAVYT-PRNT-RLLREAAEVGATVVS  484 (518)
Q Consensus       447 ~~~----~~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~i~  484 (518)
                      ...    ...++++.+++|+... |..+ .+-++++++|+.+++
T Consensus        77 ~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lD  120 (300)
T 3obb_A           77 YLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLD  120 (300)
T ss_dssp             HHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             HhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            000    1235677899999887 4433 344455678887654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.80  E-value=3.2e-05  Score=77.19  Aligned_cols=113  Identities=12%  Similarity=0.025  Sum_probs=75.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCC-CCCC-
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGME-PNSD-  444 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~-~~~~-  444 (518)
                      .+++.|||+|.+|.+++..|.+.|++|+++||++++++.+.+. +... ...++.+ ...++|+||.++|.... ...- 
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~-~~~~~~e-~~~~aDvvi~~vp~~~~~~~v~~   83 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE-GACG-AAASARE-FAGVVDALVILVVNAAQVRQVLF   83 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TCSE-EESSSTT-TTTTCSEEEECCSSHHHHHHHHC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc-CCcc-ccCCHHH-HHhcCCEEEEECCCHHHHHHHHh
Confidence            4689999999999999999999999999999999999988764 3221 0233333 45678999999985311 0000 


Q ss_pred             -CCCCChhhhcCCCEEEEEeeCCCch--HHHHHHHHCCCeee
Q 010101          445 -QSPVPKEALKAYELVFDAVYTPRNT--RLLREAAEVGATVV  483 (518)
Q Consensus       445 -~~~~~~~~l~~~~~v~Di~Y~P~~T--~ll~~A~~~G~~~i  483 (518)
                       ...+ ...++++.+++|....+..|  .+.+..++.|+.++
T Consensus        84 ~~~~l-~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~  124 (303)
T 3g0o_A           84 GEDGV-AHLMKPGSAVMVSSTISSADAQEIAAALTALNLNML  124 (303)
T ss_dssp             --CCC-GGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             ChhhH-HhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEE
Confidence             0011 12456788999998664432  23344556676544

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.79  E-value=8.1e-05  Score=73.62  Aligned_cols=221  Identities=17%  Similarity=0.199  Sum_probs=128.9

Q ss_pred             EEEecCC-CCcccCHHHHHHHHHHcCCCceEEeccc----CcHHHHHHHh-cCCCCCEEEecccchHHH--HhcccccCh
Q 010101          240 FGLVSNP-VGHSKGPILHNPAFRHTRFNGIYVPMLV----DDVKEFFRTY-SGTDFAGFSVGIPHKEPA--VACCDEVHP  311 (518)
Q Consensus       240 ~~liG~p-i~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~l~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~  311 (518)
                      .-++|+. -+++- -..-.+..+++|+......++-    +++.+.++.+ .++.+.|+-|-.|+-..+  -..++.++|
T Consensus        58 vIlVG~dpaS~~Y-v~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p  136 (303)
T 4b4u_A           58 TILVGDDGASATY-VRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISL  136 (303)
T ss_dssp             EEEESCCHHHHHH-HHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCG
T ss_pred             EEEeCCCHHHHHH-HHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhccCc
Confidence            3455643 33321 1233467889999876655554    3566667777 578899999999963211  111111111


Q ss_pred             h--hhhcCceeEEEEeccCCeEEEeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccch-hHHHHHHHHHH
Q 010101          312 L--AKSIGAVNTIIRRPIDGKLVGYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGG-AGRALAFGAKS  388 (518)
Q Consensus       312 ~--A~~iGavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg-~araia~~L~~  388 (518)
                      .  +.-....|.=..-. +.... .-.--.|++..|++     .+        .++.||+++|+|-+. .||.++.-|.+
T Consensus       137 ~KDVDG~hp~N~G~L~~-g~~~~-~PcTp~gv~~lL~~-----~~--------i~l~Gk~vvViGRS~iVGkPla~LL~~  201 (303)
T 4b4u_A          137 AKDVDGVTCLGFGRMAM-GEAAY-GSATPAGIMTILKE-----NN--------IEIAGKHAVVVGRSAILGKPMAMMLLQ  201 (303)
T ss_dssp             GGCTTCCCHHHHHHHHT-TCCCC-CCHHHHHHHHHHHH-----TT--------CCCTTCEEEEECCCTTTHHHHHHHHHH
T ss_pred             ccccCccCcchHHHhcC-CCCcc-cCccHHHHHHHHHH-----HC--------CCCCCCEEEEEeccccccchHHHHHHh
Confidence            1  00011111100000 00000 01113567766553     22        678999999999886 99999999999


Q ss_pred             CCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc
Q 010101          389 RGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN  468 (518)
Q Consensus       389 ~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~  468 (518)
                      .|+.|+++.......++                  ...++||||.|+..   |.    .+..++++++.+|+|+-.++..
T Consensus       202 ~~ATVTi~Hs~T~dl~~------------------~~~~ADIvV~A~G~---p~----~i~~d~vk~GavVIDVGin~~~  256 (303)
T 4b4u_A          202 ANATVTICHSRTQNLPE------------------LVKQADIIVGAVGK---AE----LIQKDWIKQGAVVVDAGFHPRD  256 (303)
T ss_dssp             TTCEEEEECTTCSSHHH------------------HHHTCSEEEECSCS---TT----CBCGGGSCTTCEEEECCCBCCT
T ss_pred             cCCEEEEecCCCCCHHH------------------HhhcCCeEEeccCC---CC----ccccccccCCCEEEEeceecCC
Confidence            99999999754322221                  12458999988642   22    3778899999999999887653


Q ss_pred             hHHH-----HHH-HHCCCe-eec-cH-----HHHHHHHHHHHHHhc
Q 010101          469 TRLL-----REA-AEVGAT-VVS-GV-----EMFIRQALGQFRLFT  501 (518)
Q Consensus       469 T~ll-----~~A-~~~G~~-~i~-G~-----~ml~~Qa~~qf~lw~  501 (518)
                      -.+.     +.+ +..++- -++ |.     .||+..-+.+++.-.
T Consensus       257 ~~~vGDVdf~~v~~~a~~iTPVPGGVGPmTiamLl~Ntv~aa~r~~  302 (303)
T 4b4u_A          257 GGGVGDIQLQGIEEIASAYTPVPGGVGPMTITTLIRQTVEAAEKAL  302 (303)
T ss_dssp             TSCBCSBCCTTGGGTCSEECCSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeECCcCHHHHhhhCcEECCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence            2111     222 234442 233 44     588888888776543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.74  E-value=1.1e-05  Score=78.54  Aligned_cols=71  Identities=15%  Similarity=0.285  Sum_probs=54.4

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhcC---cc-c-c---
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY-------------------ERAKALADAVSG---EA-L-H---  416 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~-------------------~ka~~la~~~~~---~~-~-~---  416 (518)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++.                   .|++.+++.+..   .. + .   
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            456899999999999999999999999 999999998                   899998877642   11 1 1   


Q ss_pred             -cc--cccccCCCCccEEEEcCC
Q 010101          417 -FE--YLHEFFPEKGMILANASA  436 (518)
Q Consensus       417 -~~--~l~~~~~~~~divInatp  436 (518)
                       +.  ++.+ ...++|+||+||.
T Consensus       109 ~~~~~~~~~-~~~~~DvVi~~~d  130 (249)
T 1jw9_B          109 LLDDAELAA-LIAEHDLVLDCTD  130 (249)
T ss_dssp             CCCHHHHHH-HHHTSSEEEECCS
T ss_pred             cCCHhHHHH-HHhCCCEEEEeCC
Confidence             11  1112 2356899999985

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.74  E-value=4.4e-05  Score=79.04  Aligned_cols=97  Identities=21%  Similarity=0.221  Sum_probs=68.5

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccc---------------------------
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF---------------------------  417 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~---------------------------  417 (518)
                      +.+.+|+|+|+|.+|+.++..+..+|++|++++|+.++.+.+.+ ++...+..                           
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS-LGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH-TTCEECCCCC-----------------CHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            56789999999999999999999999999999999998777654 56533221                           


Q ss_pred             ccccccCCCCccEEEEcCCCCCCCCCCCCCCChhh---hcCCCEEEEEeeC
Q 010101          418 EYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEA---LKAYELVFDAVYT  465 (518)
Q Consensus       418 ~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~---l~~~~~v~Di~Y~  465 (518)
                      +.+.+ .+.++|+||+|....-.+  .+..+..+.   ++++.+++|+.-.
T Consensus       267 ~~l~e-~l~~aDVVI~tvlipg~~--ap~Lvt~emv~~Mk~GsVIVDvA~d  314 (405)
T 4dio_A          267 ALVAE-HIAKQDIVITTALIPGRP--APRLVTREMLDSMKPGSVVVDLAVE  314 (405)
T ss_dssp             HHHHH-HHHTCSEEEECCCCSSSC--CCCCBCHHHHTTSCTTCEEEETTGG
T ss_pred             hHHHH-HhcCCCEEEECCcCCCCC--CCEEecHHHHhcCCCCCEEEEEeCC
Confidence            01222 245789999876322111  122355543   5788999999853

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.73  E-value=7.7e-05  Score=64.63  Aligned_cols=109  Identities=12%  Similarity=0.178  Sum_probs=69.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--c---cccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--H---FEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~---~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      +.+++|+|+|.+|+.++..|.+.|.+|++++|++++++.+.+.++...+  +   .+.+......++|+||.+++.... 
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~-   82 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV-   82 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchH-
Confidence            4689999999999999999999999999999999999888766553221  1   112222135678999999864210 


Q ss_pred             CCCCCCCC--hhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeee
Q 010101          442 NSDQSPVP--KEALKAYELVFDAVYTPRNTRLLREAAEVGATVV  483 (518)
Q Consensus       442 ~~~~~~~~--~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i  483 (518)
                        +. .+.  ...+.+..++. ...+|...   +..++.|...+
T Consensus        83 --~~-~~~~~~~~~~~~~ii~-~~~~~~~~---~~l~~~g~~~v  119 (140)
T 1lss_A           83 --NL-MSSLLAKSYGINKTIA-RISEIEYK---DVFERLGVDVV  119 (140)
T ss_dssp             --HH-HHHHHHHHTTCCCEEE-ECSSTTHH---HHHHHTTCSEE
T ss_pred             --HH-HHHHHHHHcCCCEEEE-EecCHhHH---HHHHHcCCCEE
Confidence              00 000  01134445554 44555543   44566787533

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.72  E-value=3.9e-05  Score=79.86  Aligned_cols=96  Identities=23%  Similarity=0.301  Sum_probs=68.5

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccc-------------------------c
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE-------------------------Y  419 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~-------------------------~  419 (518)
                      +.+++|+|+|+|++|++++..+..+|++|++++|+.++.+.+ +.++.....++                         .
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~-~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV-QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH-HHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            568999999999999999999999999999999999988776 55665433211                         1


Q ss_pred             ccccCCCCccEEEEcCCC-CCCCCCCCCCCChh---hhcCCCEEEEEeeC
Q 010101          420 LHEFFPEKGMILANASAI-GMEPNSDQSPVPKE---ALKAYELVFDAVYT  465 (518)
Q Consensus       420 l~~~~~~~~divInatp~-g~~~~~~~~~~~~~---~l~~~~~v~Di~Y~  465 (518)
                      +.+ ...++|+||+++.. |..   .+..+..+   .++++.+++|+.+.
T Consensus       249 l~e-~~~~aDvVI~~~~~pg~~---ap~li~~~~l~~mk~g~vIVdva~~  294 (401)
T 1x13_A          249 FAA-QAKEVDIIVTTALIPGKP---APKLITREMVDSMKAGSVIVDLAAQ  294 (401)
T ss_dssp             HHH-HHHHCSEEEECCCCTTSC---CCCCBCHHHHHTSCTTCEEEETTGG
T ss_pred             HHH-HhCCCCEEEECCccCCCC---CCeeeCHHHHhcCCCCcEEEEEcCC
Confidence            222 23468999999644 321   11224433   35788999999864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.68  E-value=2.1e-05  Score=80.62  Aligned_cols=113  Identities=16%  Similarity=0.164  Sum_probs=74.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .++.++.|||.|-+|++++..|.+.|++|+++||++++++++.+. +... .+++++.. ....+|+||.++|.+ .  .
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~-~a~~~DvVi~~vp~~-~--v   94 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALERE-GIAGARSIEEFCA-KLVKPRVVWLMVPAA-V--V   94 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-TCBCCSSHHHHHH-HSCSSCEEEECSCGG-G--H
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC-CCEEeCCHHHHHh-cCCCCCEEEEeCCHH-H--H
Confidence            346789999999999999999999999999999999999888754 3221 12333221 123349999999865 1  1


Q ss_pred             CCCCCC--hhhhcCCCEEEEEeeCCCc-h-HHHHHHHHCCCeee
Q 010101          444 DQSPVP--KEALKAYELVFDAVYTPRN-T-RLLREAAEVGATVV  483 (518)
Q Consensus       444 ~~~~~~--~~~l~~~~~v~Di~Y~P~~-T-~ll~~A~~~G~~~i  483 (518)
                      .. .+.  ...++++.+++|+...+.. + .+.+..+++|+.++
T Consensus        95 ~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v  137 (358)
T 4e21_A           95 DS-MLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYV  137 (358)
T ss_dssp             HH-HHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEE
T ss_pred             HH-HHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEE
Confidence            11 010  1235678899999876532 2 33445566777654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.67  E-value=0.0001  Score=72.63  Aligned_cols=75  Identities=28%  Similarity=0.288  Sum_probs=57.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccc----ccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH----FEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~----~~~---l~~~------~~~~~d  429 (518)
                      .|+||.++|.|+ +|.|++++..|++.|++|.+++|+.+++++++++++.+...    +.+   +...      .....|
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD  105 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRID  105 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999998 58999999999999999999999999999999998754321    111   1100      124579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||....+
T Consensus       106 iLVNNAG~~  114 (273)
T 4fgs_A          106 VLFVNAGGG  114 (273)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.66  E-value=9.2e-06  Score=81.15  Aligned_cols=110  Identities=18%  Similarity=0.205  Sum_probs=68.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQS  446 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~  446 (518)
                      .+||-+||.|-||.+++..|.+.|++|+++||++++++++++. +...  .+++.+ ....+|+||-+.|.+..  ... 
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~--~~s~~e-~~~~~dvvi~~l~~~~~--~~~-   77 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKL-GATV--VENAID-AITPGGIVFSVLADDAA--VEE-   77 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTT-TCEE--CSSGGG-GCCTTCEEEECCSSHHH--HHH-
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc-CCeE--eCCHHH-HHhcCCceeeeccchhh--HHH-
Confidence            3689999999999999999999999999999999998877643 2221  122223 34678999987764211  001 


Q ss_pred             CCCh---hhhcCCCEEEEEeeC-CCch-HHHHHHHHCCCeee
Q 010101          447 PVPK---EALKAYELVFDAVYT-PRNT-RLLREAAEVGATVV  483 (518)
Q Consensus       447 ~~~~---~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~i  483 (518)
                      .+..   ..+.++.+++|+... |..| .+-+.++++|+.++
T Consensus        78 v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l  119 (297)
T 4gbj_A           78 LFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYV  119 (297)
T ss_dssp             HSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence            1111   235678899999886 4433 34445667787654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.65  E-value=2.8e-05  Score=76.94  Aligned_cols=110  Identities=22%  Similarity=0.173  Sum_probs=72.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSP  447 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~  447 (518)
                      +++.|||+|.+|++++..|.+.|++|++++|++++++++.+. +...  ..++.+ ...++|+||.++|....  .....
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~-~~~~aDvvi~~vp~~~~--~~~v~   75 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAAL-GAER--AATPCE-VVESCPVTFAMLADPAA--AEEVC   75 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT-TCEE--CSSHHH-HHHHCSEEEECCSSHHH--HHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCee--cCCHHH-HHhcCCEEEEEcCCHHH--HHHHH
Confidence            579999999999999999999999999999999999888764 2221  122222 23457999999874210  00000


Q ss_pred             C--C--hhhhcCCCEEEEEeeCCCch--HHHHHHHHCCCeee
Q 010101          448 V--P--KEALKAYELVFDAVYTPRNT--RLLREAAEVGATVV  483 (518)
Q Consensus       448 ~--~--~~~l~~~~~v~Di~Y~P~~T--~ll~~A~~~G~~~i  483 (518)
                      +  .  ...++++.+++|....+..+  .+.+..++.|+.++
T Consensus        76 ~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~  117 (287)
T 3pef_A           76 FGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFL  117 (287)
T ss_dssp             HSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             cCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEE
Confidence            0  0  12356788999997654432  33345566776543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.64  E-value=0.00033  Score=72.79  Aligned_cols=68  Identities=18%  Similarity=0.122  Sum_probs=52.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInat  435 (518)
                      ..+.|++++|+|+|.+|++++..|...|++|++++|++.++.+ +...+....++++    .+..+|++|.|+
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~-A~~~G~~v~~Lee----al~~ADIVi~at  283 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQ-ACMDGFRLVKLNE----VIRQVDIVITCT  283 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-HHHTTCEECCHHH----HTTTCSEEEECS
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHH-HHHcCCEeccHHH----HHhcCCEEEECC
Confidence            4678999999999999999999999999999999999887654 3344433334433    345689998864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.62  E-value=4e-05  Score=74.15  Aligned_cols=96  Identities=18%  Similarity=0.184  Sum_probs=62.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH--------------HHHHHHHhcCcccccccccccCCCCc
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYER--------------AKALADAVSGEALHFEYLHEFFPEKG  428 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~k--------------a~~la~~~~~~~~~~~~l~~~~~~~~  428 (518)
                      ..+.++++.|||+|.+|.+++..|.+.|++|++++|++++              ++++++.++..  ...+..+ ...++
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e-~~~~a   91 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHV--HLAAFAD-VAAGA   91 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTC--EEEEHHH-HHHHC
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCce--eccCHHH-HHhcC
Confidence            3567899999999999999999999999999999999998              55555444321  1222222 23468


Q ss_pred             cEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEe
Q 010101          429 MILANASAIGMEPNSDQSPVPKEALKAYELVFDAV  463 (518)
Q Consensus       429 divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~  463 (518)
                      |+||.++|.......- ..+....+ ++.+++|+.
T Consensus        92 DvVilavp~~~~~~~~-~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           92 ELVVNATEGASSIAAL-TAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             SEEEECSCGGGHHHHH-HHHCHHHH-TTSEEEECC
T ss_pred             CEEEEccCcHHHHHHH-HHhhhhhc-CCCEEEECC
Confidence            9999999864221100 00111224 678999998

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.61  E-value=0.0023  Score=65.08  Aligned_cols=131  Identities=20%  Similarity=0.208  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCc-ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccc
Q 010101          338 CESAISAIEDALRERQGINGVASHTS-PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH  416 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~-~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~  416 (518)
                      +.|.+..++..++.. |        . +++||++.|+|.|.+|+.++..|...|++|.+++++.++ ++.++.++.+.++
T Consensus       154 g~Gv~~~~~~~~~~~-G--------~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~ga~~v~  223 (355)
T 1c1d_A          154 AVGVFEAMKATVAHR-G--------LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVALGHTAVA  223 (355)
T ss_dssp             HHHHHHHHHHHHHHT-T--------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHTTCEECC
T ss_pred             HHHHHHHHHHHHHhc-C--------CCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhcCCEEeC
Confidence            667777777766543 3        3 689999999999999999999999999999999999887 6777777765544


Q ss_pred             cccccccCCCCccEEEEcCCCCCCCCCCCCCCChhh---hcCCCEEEEEeeCCCch-HHHHHHHHCCCeeeccHHHHH
Q 010101          417 FEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEA---LKAYELVFDAVYTPRNT-RLLREAAEVGATVVSGVEMFI  490 (518)
Q Consensus       417 ~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~---l~~~~~v~Di~Y~P~~T-~ll~~A~~~G~~~i~G~~ml~  490 (518)
                      .+++-.   ..+|+++.|.--+        .+..+.   ++ ..+|++..-.|... .-.+.-+++|+.++++.-.-.
T Consensus       224 ~~ell~---~~~DIliP~A~~~--------~I~~~~~~~lk-~~iVie~AN~p~t~~eA~~~L~~~gIlv~Pd~~aNa  289 (355)
T 1c1d_A          224 LEDVLS---TPCDVFAPCAMGG--------VITTEVARTLD-CSVVAGAANNVIADEAASDILHARGILYAPDFVANA  289 (355)
T ss_dssp             GGGGGG---CCCSEEEECSCSC--------CBCHHHHHHCC-CSEECCSCTTCBCSHHHHHHHHHTTCEECCHHHHTT
T ss_pred             hHHhhc---CccceecHhHHHh--------hcCHHHHhhCC-CCEEEECCCCCCCCHHHHHHHHhCCEEEECCeEEcC
Confidence            444311   3689998653211        244432   33 56788877667533 334566788998887765443

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.61  E-value=0.00026  Score=74.78  Aligned_cols=69  Identities=26%  Similarity=0.314  Sum_probs=51.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      ..+.||+++|+|+|++|++++..|+..|++|++++|++.++++.+.. +....+.   .+ ....+|+++.++.
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~-g~dv~~l---ee-~~~~aDvVi~atG  329 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATME-GLQVLTL---ED-VVSEADIFVTTTG  329 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TCEECCG---GG-TTTTCSEEEECSS
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-CCccCCH---HH-HHHhcCEEEeCCC
Confidence            46889999999999999999999999999999999999888766543 2222222   22 3345677766553

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.56  E-value=0.0004  Score=72.35  Aligned_cols=94  Identities=20%  Similarity=0.197  Sum_probs=65.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|++++|+|.|.+|++++..|...|++|++++|++.++...+ ..+....+++   + .+.++|+||.++..  ...
T Consensus       207 ~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-~~G~~~~sL~---e-al~~ADVVilt~gt--~~i  279 (436)
T 3h9u_A          207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-MEGYQVLLVE---D-VVEEAHIFVTTTGN--DDI  279 (436)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEECCHH---H-HTTTCSEEEECSSC--SCS
T ss_pred             CcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-HhCCeecCHH---H-HHhhCCEEEECCCC--cCc
Confidence            567899999999999999999999999999999999988765433 3344433443   3 45678999975532  111


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeC
Q 010101          443 SDQSPVPKEALKAYELVFDAVYT  465 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~  465 (518)
                      .+...  ...++++.+++++.-.
T Consensus       280 I~~e~--l~~MK~gAIVINvgRg  300 (436)
T 3h9u_A          280 ITSEH--FPRMRDDAIVCNIGHF  300 (436)
T ss_dssp             BCTTT--GGGCCTTEEEEECSSS
T ss_pred             cCHHH--HhhcCCCcEEEEeCCC
Confidence            11111  1235777888888644

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.52  E-value=7.7e-05  Score=70.01  Aligned_cols=92  Identities=18%  Similarity=0.203  Sum_probs=61.8

Q ss_pred             EEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----cccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          369 IFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG----EALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       369 ~vlvlG-aGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~----~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      +++|+| +|.+|++++..|.+.|++|++++|+.++++++.+.++.    ..+...++.+ ...++|+||.++|.......
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~Vi~~~~~~~~~~~   80 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNED-AAEACDIAVLTIPWEHAIDT   80 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHH-HHHHCSEEEECSCHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHH-HHhcCCEEEEeCChhhHHHH
Confidence            689999 99999999999999999999999999999888776541    0011223322 23468999999985432100


Q ss_pred             CCCCCChhhhcCCCEEEEEee
Q 010101          444 DQSPVPKEALKAYELVFDAVY  464 (518)
Q Consensus       444 ~~~~~~~~~l~~~~~v~Di~Y  464 (518)
                      - ..+ ...+ ++.+++|+.-
T Consensus        81 ~-~~l-~~~~-~~~~vi~~~~   98 (212)
T 1jay_A           81 A-RDL-KNIL-REKIVVSPLV   98 (212)
T ss_dssp             H-HHT-HHHH-TTSEEEECCC
T ss_pred             H-HHH-HHHc-CCCEEEEcCC
Confidence            0 001 1123 3678888874

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.52  E-value=0.00016  Score=70.50  Aligned_cols=69  Identities=28%  Similarity=0.300  Sum_probs=52.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGAR-VIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~-v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      .+.++.|||+|.+|++++..|.+.|++ |++++|+.++++++++.++...  ..++.+ ...++|+||.|+|.
T Consensus         9 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~--~~~~~~-~~~~~Dvvi~av~~   78 (266)
T 3d1l_A            9 EDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEY--TTDLAE-VNPYAKLYIVSLKD   78 (266)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEE--ESCGGG-SCSCCSEEEECCCH
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCce--eCCHHH-HhcCCCEEEEecCH
Confidence            456899999999999999999999996 9999999999999988765332  122222 23456777777653

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.52  E-value=4.1e-05  Score=74.54  Aligned_cols=71  Identities=11%  Similarity=0.300  Sum_probs=51.7

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeC----------CH---------HHHHHHHHHhcCc--cccc-----
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNR----------NY---------ERAKALADAVSGE--ALHF-----  417 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nR----------t~---------~ka~~la~~~~~~--~~~~-----  417 (518)
                      +++++|+|+|+||+|..++.+|+..|+ +|+|+++          ..         .|++.+++.+...  .+.+     
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  105 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ  105 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence            457899999999999999999999999 9999954          33         7888888776421  1111     


Q ss_pred             ----ccccccCCCCccEEEEcCC
Q 010101          418 ----EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       418 ----~~l~~~~~~~~divInatp  436 (518)
                          +++.+ ...++|+||+||.
T Consensus       106 ~~~~~~~~~-~~~~~DvVi~~~d  127 (251)
T 1zud_1          106 RLTGEALKD-AVARADVVLDCTD  127 (251)
T ss_dssp             CCCHHHHHH-HHHHCSEEEECCS
T ss_pred             cCCHHHHHH-HHhcCCEEEECCC
Confidence                11111 2345899999985

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.51  E-value=0.00026  Score=71.73  Aligned_cols=95  Identities=17%  Similarity=0.263  Sum_probs=66.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.++++.|||.|.+|++++..|...|++|++++|+.++  +.+..++....   ++.+ .+.++|+|+.++|....  
T Consensus       146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~--~~~~~~g~~~~---~l~~-~l~~aDvVil~vp~~~~--  217 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE--EVERELNAEFK---PLED-LLRESDFVVLAVPLTRE--  217 (334)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHHHCCEEC---CHHH-HHHHCSEEEECCCCCTT--
T ss_pred             cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch--hhHhhcCcccC---CHHH-HHhhCCEEEECCCCChH--
Confidence            3578999999999999999999999999999999999876  33444443322   2322 23468999999987531  


Q ss_pred             CCCCCCCh---hhhcCCCEEEEEeeCC
Q 010101          443 SDQSPVPK---EALKAYELVFDAVYTP  466 (518)
Q Consensus       443 ~~~~~~~~---~~l~~~~~v~Di~Y~P  466 (518)
                       ....+..   ..++++.+++|+.-.+
T Consensus       218 -t~~~i~~~~~~~mk~~ailIn~srg~  243 (334)
T 2dbq_A          218 -TYHLINEERLKLMKKTAILINIARGK  243 (334)
T ss_dssp             -TTTCBCHHHHHHSCTTCEEEECSCGG
T ss_pred             -HHHhhCHHHHhcCCCCcEEEECCCCc
Confidence             1112332   2356677787776554

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.51  E-value=0.00022  Score=62.35  Aligned_cols=115  Identities=17%  Similarity=0.221  Sum_probs=71.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--cc---ccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HF---EYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~---~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .++++|+|+|..|++++..|.+.|++|++++|++++++.+.+. +...+  +.   +.+......++|++|.+++-.   
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~---   81 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-GFDAVIADPTDESFYRSLDLEGVSAVLITGSDD---   81 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-TCEEEECCTTCHHHHHHSCCTTCSEEEECCSCH---
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-CCcEEECCCCCHHHHHhCCcccCCEEEEecCCH---
Confidence            5689999999999999999999999999999999998887654 32211  11   112222356789999988721   


Q ss_pred             CCCCCCCCh--hhhcCCCEEEEEeeCCCchHHHHHHHHCCCe-eeccHHHHH
Q 010101          442 NSDQSPVPK--EALKAYELVFDAVYTPRNTRLLREAAEVGAT-VVSGVEMFI  490 (518)
Q Consensus       442 ~~~~~~~~~--~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~-~i~G~~ml~  490 (518)
                      ..+ ..+..  ..+. ...++-.+..+...   +..++.|.. +++-.....
T Consensus        82 ~~n-~~~~~~a~~~~-~~~iia~~~~~~~~---~~l~~~G~~~vi~p~~~~~  128 (141)
T 3llv_A           82 EFN-LKILKALRSVS-DVYAIVRVSSPKKK---EEFEEAGANLVVLVADAVK  128 (141)
T ss_dssp             HHH-HHHHHHHHHHC-CCCEEEEESCGGGH---HHHHHTTCSEEEEHHHHHH
T ss_pred             HHH-HHHHHHHHHhC-CceEEEEEcChhHH---HHHHHcCCCEEECHHHHHH
Confidence            000 00000  1123 33344455555544   445777886 555444433

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.50  E-value=0.00025  Score=71.06  Aligned_cols=107  Identities=17%  Similarity=0.269  Sum_probs=74.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++  +.+...+....++++    ...++|+|+.++|..-  .
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~--~~~~~~g~~~~~l~e----ll~~aDvV~l~~p~~~--~  209 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE--ERAKEVNGKFVDLET----LLKESDVVTIHVPLVE--S  209 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHHTTCEECCHHH----HHHHCSEEEECCCCST--T
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh--hhHhhcCccccCHHH----HHhhCCEEEEecCCCh--H
Confidence            3578999999999999999999999999999999999876  234555544333333    2346899999998742  1


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCCC-ch-HHHHHHHHC
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTPR-NT-RLLREAAEV  478 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P~-~T-~ll~~A~~~  478 (518)
                       ....+..+   .++++.+++|+.-.+. .+ .|.+..++.
T Consensus       210 -t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g  249 (307)
T 1wwk_A          210 -TYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEG  249 (307)
T ss_dssp             -TTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             -HhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence             12234433   3578899999988743 33 444444443

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.50  E-value=0.00038  Score=70.54  Aligned_cols=96  Identities=15%  Similarity=0.134  Sum_probs=68.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|+|.|.+|++++..|...|++|+.++|+.++.  .+...+....++++    .+.++|+|+.++|..-  .
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~g~~~~~l~e----ll~~aDvV~l~~P~t~--~  232 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE--VSASFGVQQLPLEE----IWPLCDFITVHTPLLP--S  232 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH--HHHHTTCEECCHHH----HGGGCSEEEECCCCCT--T
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh--hhhhcCceeCCHHH----HHhcCCEEEEecCCCH--H
Confidence            45789999999999999999999999999999999987653  34455543333333    3456899999998752  1


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCCC
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTPR  467 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P~  467 (518)
                       ....+..+   .++++.+++|+.-.+.
T Consensus       233 -t~~li~~~~l~~mk~gailIN~arg~v  259 (335)
T 2g76_A          233 -TTGLLNDNTFAQCKKGVRVVNCARGGI  259 (335)
T ss_dssp             -TTTSBCHHHHTTSCTTEEEEECSCTTS
T ss_pred             -HHHhhCHHHHhhCCCCcEEEECCCccc
Confidence             11224333   3567788888877643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.49  E-value=6.8e-05  Score=65.23  Aligned_cols=72  Identities=21%  Similarity=0.191  Sum_probs=51.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--c---cccccccCCCCccEEEEcCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--H---FEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~---~~~l~~~~~~~~divInatp~  437 (518)
                      +++++++|+|+|++|+.++..|.+.|++|++++|+.++++.+.+. +...+  +   .+.+.+....++|+||.+++.
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~   80 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIGA   80 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTT-CSEEEECCTTCHHHHHTTTGGGCSEEEECCCS
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-CCEEEEeCCCCHHHHHhcCCCCCCEEEECCCC
Confidence            346789999999999999999999999999999999887765432 22111  1   112222124568999999874

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.49  E-value=2.7e-05  Score=77.07  Aligned_cols=110  Identities=15%  Similarity=0.120  Sum_probs=73.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC--
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ--  445 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~--  445 (518)
                      +++.|||+|.+|.+++..|.+.|++|+++||++++++++.+. +...  ..++.+ ...++|+||.++|....  ...  
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~-~~~~advvi~~v~~~~~--~~~v~   75 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL-GARQ--ASSPAE-VCAACDITIAMLADPAA--AREVC   75 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH-TCEE--CSCHHH-HHHHCSEEEECCSSHHH--HHHHH
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCee--cCCHHH-HHHcCCEEEEEcCCHHH--HHHHH
Confidence            368999999999999999999999999999999999888764 3221  112222 23457999999985310  000  


Q ss_pred             ---CCCChhhhcCCCEEEEEeeCCCc-h-HHHHHHHHCCCeeec
Q 010101          446 ---SPVPKEALKAYELVFDAVYTPRN-T-RLLREAAEVGATVVS  484 (518)
Q Consensus       446 ---~~~~~~~l~~~~~v~Di~Y~P~~-T-~ll~~A~~~G~~~i~  484 (518)
                         ..+ ...+.++.+++|....+.. + .+.+..++.|..+++
T Consensus        76 ~~~~~l-~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~  118 (287)
T 3pdu_A           76 FGANGV-LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLE  118 (287)
T ss_dssp             HSTTCG-GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCchhh-hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence               001 1235677899999876443 2 233445667776554

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.49  E-value=0.0002  Score=68.07  Aligned_cols=74  Identities=22%  Similarity=0.247  Sum_probs=54.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-ccc--cc-ccccccCCCCccEEEEcCCC
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG-EAL--HF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~-~~~--~~-~~l~~~~~~~~divInatp~  437 (518)
                      ..+++++++|.|+ |+.|++++..|.+.|++|+++.|+.++++++.+. +. ..+  ++ +++.+ ...+.|+|||+...
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~-~~~~~~~~Dl~~~~~~-~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER-GASDIVVANLEEDFSH-AFASIDAVVFAAGS   94 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT-TCSEEEECCTTSCCGG-GGTTCSEEEECCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC-CCceEEEcccHHHHHH-HHcCCCEEEECCCC
Confidence            4578999999998 8899999999999999999999999998887653 22 221  22 33333 45678999998865


Q ss_pred             C
Q 010101          438 G  438 (518)
Q Consensus       438 g  438 (518)
                      .
T Consensus        95 ~   95 (236)
T 3e8x_A           95 G   95 (236)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.48  E-value=0.00027  Score=70.97  Aligned_cols=108  Identities=17%  Similarity=0.267  Sum_probs=74.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.  .+...+....++++    ...++|+|+.++|..-  .
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~g~~~~~l~e----ll~~aDvVvl~~P~~~--~  209 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE--KAEKINAKAVSLEE----LLKNSDVISLHVTVSK--D  209 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHHTTCEECCHHH----HHHHCSEEEECCCCCT--T
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh--HHHhcCceecCHHH----HHhhCCEEEEeccCCh--H
Confidence            35789999999999999999999999999999999998764  24555544333333    2346899999998642  1


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCCC-chHHHHHHHHCC
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTPR-NTRLLREAAEVG  479 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P~-~T~ll~~A~~~G  479 (518)
                      + ...+...   .++++.+++|+.-.+. .+.-+.+|-+.|
T Consensus       210 t-~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g  249 (313)
T 2ekl_A          210 A-KPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKG  249 (313)
T ss_dssp             S-CCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTT
T ss_pred             H-HHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence            1 1224433   3577888999877643 344344444433

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.48  E-value=0.00035  Score=70.69  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=33.9

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY  400 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~  400 (518)
                      .+++++|+|+|+||.|.+++.+|+..|+ +|+|++++.
T Consensus        31 kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           31 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            3568999999999999999999999999 999998864

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.47  E-value=0.00018  Score=70.17  Aligned_cols=75  Identities=27%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---ccc----cccc----------ccccC
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG---EAL----HFEY----------LHEFF  424 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~---~~~----~~~~----------l~~~~  424 (518)
                      .+++||.++|.|+ +|.|++++..|++.|++|.+++|+.+++++.++++..   +..    ++.+          ..+ .
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-~   83 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDA-E   83 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH-T
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH-H
Confidence            4689999999988 5899999999999999999999999999988877642   211    1111          111 2


Q ss_pred             CCCccEEEEcCCCC
Q 010101          425 PEKGMILANASAIG  438 (518)
Q Consensus       425 ~~~~divInatp~g  438 (518)
                      ....|++||.....
T Consensus        84 ~G~iDiLVNNAG~~   97 (255)
T 4g81_D           84 GIHVDILINNAGIQ   97 (255)
T ss_dssp             TCCCCEEEECCCCC
T ss_pred             CCCCcEEEECCCCC
Confidence            35679999987543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.46  E-value=4.5e-05  Score=76.82  Aligned_cols=111  Identities=14%  Similarity=0.074  Sum_probs=70.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCH---HHHHHHHHHhcCcccccc-cccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNY---ERAKALADAVSGEALHFE-YLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G-~~v~i~nRt~---~ka~~la~~~~~~~~~~~-~l~~~~~~~~divInatp~g~~~  441 (518)
                      .+++.|||+|.+|.+++..|.+.| .+|+++||++   +++++..+.+..... .. ++.+ ...++|+||.++|.....
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~~e-~~~~aDvVi~avp~~~~~  101 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDDVA-GIACADVVLSLVVGAATK  101 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESSGG-GGGGCSEEEECCCGGGHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCHHH-HHhcCCEEEEecCCHHHH
Confidence            368999999999999999999999 8999999997   333333332211111 23 3333 345689999999864221


Q ss_pred             CCCCCCCC--hhhhcCCCEEEEEeeCCCc-hHH-HHHHHHCCCeee
Q 010101          442 NSDQSPVP--KEALKAYELVFDAVYTPRN-TRL-LREAAEVGATVV  483 (518)
Q Consensus       442 ~~~~~~~~--~~~l~~~~~v~Di~Y~P~~-T~l-l~~A~~~G~~~i  483 (518)
                      .    .+.  ...++++.+++|....+.. +.- .+..++.|..++
T Consensus       102 ~----~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~  143 (317)
T 4ezb_A          102 A----VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFV  143 (317)
T ss_dssp             H----HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEE
T ss_pred             H----HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            1    010  1135677899999865433 322 234455676543

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.46  E-value=0.0001  Score=69.84  Aligned_cols=90  Identities=18%  Similarity=0.190  Sum_probs=63.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQS  446 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~  446 (518)
                      .+++.|+|+|.+|++++..|.+.|.+|++++|+.++++++.+. +...   .++.+ ...++|+||.|+|......    
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~-g~~~---~~~~~-~~~~~DvVi~av~~~~~~~----   98 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPS-AAQV---TFQEE-AVSSPEVIFVAVFREHYSS----   98 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBT-TSEE---EEHHH-HTTSCSEEEECSCGGGSGG----
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCce---ecHHH-HHhCCCEEEECCChHHHHH----
Confidence            4689999999999999999999999999999999988776543 2221   13323 3457899999998643211    


Q ss_pred             CCCh-hhhcCCCEEEEEeeCC
Q 010101          447 PVPK-EALKAYELVFDAVYTP  466 (518)
Q Consensus       447 ~~~~-~~l~~~~~v~Di~Y~P  466 (518)
                      .+.. ..+ ++.+++|+...-
T Consensus        99 v~~l~~~~-~~~~vv~~s~g~  118 (215)
T 2vns_A           99 LCSLSDQL-AGKILVDVSNPT  118 (215)
T ss_dssp             GGGGHHHH-TTCEEEECCCCC
T ss_pred             HHHHHHhc-CCCEEEEeCCCc
Confidence            1111 123 678999998653

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.44  E-value=0.0005  Score=72.56  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=62.4

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHHHhcCcccccccccccCCCC-ccEEEEcCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE----RAKALADAVSGEALHFEYLHEFFPEK-GMILANASAIG  438 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~----ka~~la~~~~~~~~~~~~l~~~~~~~-~divInatp~g  438 (518)
                      .+++|+++|+|.|++|.++|..|.++|++|+++++...    ..+.|.+ .|.... .....+....+ +|+||-++  |
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~-~gi~~~-~g~~~~~~~~~~~d~vv~sp--g   81 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLE-EGIKVV-CGSHPLELLDEDFCYMIKNP--G   81 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHH-TTCEEE-ESCCCGGGGGSCEEEEEECT--T
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHh-CCCEEE-ECCChHHhhcCCCCEEEECC--c
Confidence            46789999999999999999999999999999998642    2222221 121110 00000000011 34333211  1


Q ss_pred             CCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHH
Q 010101          439 MEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIR  491 (518)
Q Consensus       439 ~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~  491 (518)
                                                -|...|.+++|+++|++++...+++..
T Consensus        82 --------------------------i~~~~p~~~~a~~~gi~v~~~~e~~~~  108 (451)
T 3lk7_A           82 --------------------------IPYNNPMVKKALEKQIPVLTEVELAYL  108 (451)
T ss_dssp             --------------------------SCTTSHHHHHHHHTTCCEECHHHHHHH
T ss_pred             --------------------------CCCCChhHHHHHHCCCcEEeHHHHHHH
Confidence                                      144678899999999999999998754

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.44  E-value=0.00017  Score=72.63  Aligned_cols=117  Identities=17%  Similarity=0.133  Sum_probs=78.6

Q ss_pred             EEEEEccchhHHHH-HHHHHHCCCe-EEEEeCCHHHHHHHHHHhcCc-c-cccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRAL-AFGAKSRGAR-VIIFNRNYERAKALADAVSGE-A-LHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       369 ~vlvlGaGg~arai-a~~L~~~G~~-v~i~nRt~~ka~~la~~~~~~-~-~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      ++.|||+|++|+.. +.+|.+.|++ +.|++|+.++++++++.++.. . -+++++-+  ..+.|+|+.+||.....   
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~--~~~~D~V~i~tp~~~h~---   76 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVG--DPDVDAVYVSTTNELHR---   76 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHT--CTTCCEEEECSCGGGHH---
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEEeCChhHhH---
Confidence            68999999999998 7788776775 569999999999999988753 2 23333311  13589999999865321   


Q ss_pred             CCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHHHHHHH
Q 010101          445 QSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVEMFIRQAL  494 (518)
Q Consensus       445 ~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml~~Qa~  494 (518)
                        ++....+..+.-|+  +-+|..      ..+.+.|++.|+.+..|..+-...+.
T Consensus        77 --~~~~~al~~Gk~v~--~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~  128 (332)
T 2glx_A           77 --EQTLAAIRAGKHVL--CEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAH  128 (332)
T ss_dssp             --HHHHHHHHTTCEEE--ECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHH
T ss_pred             --HHHHHHHHCCCeEE--EeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHH
Confidence              12234455555443  345532      45777888899887776554443333

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.42  E-value=8.3e-05  Score=79.19  Aligned_cols=114  Identities=24%  Similarity=0.246  Sum_probs=75.1

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCcc-cccccccccCCCCccEEEEcCCCCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV---SGEA-LHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~---~~~~-~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..+++.|||+|.||.+++..|++.|++|+++||++++++++.+..   +... .+.+++.. .++.+|+||-++|.+.. 
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~-~l~~aDvVil~Vp~~~~-   91 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVE-SLETPRRILLMVKAGAG-   91 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHH-TBCSSCEEEECSCSSSH-
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHh-CCCCCCEEEEECCCHHH-
Confidence            457899999999999999999999999999999999999998764   2111 12222211 12348999999987521 


Q ss_pred             CCCCCCCC--hhhhcCCCEEEEEeeCC-CchH-HHHHHHHCCCeee
Q 010101          442 NSDQSPVP--KEALKAYELVFDAVYTP-RNTR-LLREAAEVGATVV  483 (518)
Q Consensus       442 ~~~~~~~~--~~~l~~~~~v~Di~Y~P-~~T~-ll~~A~~~G~~~i  483 (518)
                       .+. .+.  ...++++.+++|+.-.. ..|. +.+..++.|..++
T Consensus        92 -v~~-vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v  135 (480)
T 2zyd_A           92 -TDA-AIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFI  135 (480)
T ss_dssp             -HHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             -HHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCee
Confidence             010 011  11356678999987653 3333 4444556676643

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.42  E-value=0.0001  Score=73.62  Aligned_cols=126  Identities=11%  Similarity=0.087  Sum_probs=81.0

Q ss_pred             CcEEEEEccchhHHH-HHHHHHHC-CCeEE-EEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRA-LAFGAKSR-GARVI-IFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       367 ~k~vlvlGaGg~ara-ia~~L~~~-G~~v~-i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      ..++.|||+|.+|+. .+.+|.+. ++++. |++|+.++++++++.++...  +.++.+ .+.+.|+|+.|||...... 
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~--~~~~~~-ll~~~D~V~i~tp~~~h~~-   81 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMP--FDSIES-LAKKCDCIFLHSSTETHYE-   81 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCB--CSCHHH-HHTTCSEEEECCCGGGHHH-
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCC--cCCHHH-HHhcCCEEEEeCCcHhHHH-
Confidence            358999999999996 78888764 56655 99999999999999987543  333333 2237899999998654321 


Q ss_pred             CCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcC
Q 010101          444 DQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTG  502 (518)
Q Consensus       444 ~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g  502 (518)
                          +....+..+.-|+  +-+|.-      ..+.+.|++.|..+.-|...-...+....+-+.|
T Consensus        82 ----~~~~al~~gk~vl--~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~ig  140 (308)
T 3uuw_A           82 ----IIKILLNLGVHVY--VDKPLASTVSQGEELIELSTKKNLNLMVGFNRRFCPMYKEIKNNAT  140 (308)
T ss_dssp             ----HHHHHHHTTCEEE--ECSSSSSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHCC
T ss_pred             ----HHHHHHHCCCcEE--EcCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCHHHHHHHHHcC
Confidence                1223344443333  334442      3366677777877776666554444444443333

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.42  E-value=0.00039  Score=72.44  Aligned_cols=69  Identities=22%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      ..+.||+++|+|.|.+|++++..|...|++|++++|++.++.+. ...+....++++    .+.++|+|+.+++
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A-~~~G~~vv~LeE----lL~~ADIVv~atg  311 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQA-AMDGFEVVTLDD----AASTADIVVTTTG  311 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH-HHTTCEECCHHH----HGGGCSEEEECCS
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHH-HhcCceeccHHH----HHhhCCEEEECCC
Confidence            56889999999999999999999999999999999998876443 334444444443    3346888888763

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=97.42  E-value=0.00047  Score=70.34  Aligned_cols=93  Identities=16%  Similarity=0.195  Sum_probs=64.2

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-ccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-HFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+...  +.+...+.... ++++    .+.++|+|+.++|..-  
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~~~~~g~~~~~~l~e----ll~~aDiV~l~~Plt~--  227 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK--ERARADGFAVAESKDA----LFEQSDVLSVHLRLND--  227 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH--HHHHHTTCEECSSHHH----HHHHCSEEEECCCCST--
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH--HHHHhcCceEeCCHHH----HHhhCCEEEEeccCcH--
Confidence            4578999999999999999999999999999999998643  23334444332 3333    2346899999998642  


Q ss_pred             CCCCCCCChhh---hcCCCEEEEEee
Q 010101          442 NSDQSPVPKEA---LKAYELVFDAVY  464 (518)
Q Consensus       442 ~~~~~~~~~~~---l~~~~~v~Di~Y  464 (518)
                      . ....+..+.   ++++.+++|+.-
T Consensus       228 ~-t~~li~~~~l~~mk~gailIN~aR  252 (352)
T 3gg9_A          228 E-TRSIITVADLTRMKPTALFVNTSR  252 (352)
T ss_dssp             T-TTTCBCHHHHTTSCTTCEEEECSC
T ss_pred             H-HHHhhCHHHHhhCCCCcEEEECCC
Confidence            1 112244332   466677777653

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.41  E-value=7.7e-05  Score=74.74  Aligned_cols=111  Identities=16%  Similarity=0.141  Sum_probs=73.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      +.+++.|||+|-+|.+++..|.+.|++|+++||++++++++.+. +...  ..++.+ ...++|+||.++|....  ...
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~--~~~~~~-~~~~aDvvi~~vp~~~~--~~~   93 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEH-GASV--CESPAE-VIKKCKYTIAMLSDPCA--ALS   93 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT-TCEE--CSSHHH-HHHHCSEEEECCSSHHH--HHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC-CCeE--cCCHHH-HHHhCCEEEEEcCCHHH--HHH
Confidence            34689999999999999999999999999999999999888743 3221  112222 23458999999874311  000


Q ss_pred             -----CCCChhhhcCCCEEEEEeeCCCch--HHHHHHHHCCCeee
Q 010101          446 -----SPVPKEALKAYELVFDAVYTPRNT--RLLREAAEVGATVV  483 (518)
Q Consensus       446 -----~~~~~~~l~~~~~v~Di~Y~P~~T--~ll~~A~~~G~~~i  483 (518)
                           ..+ ...+.++.+++|+...+..+  .+.+..++.|..++
T Consensus        94 v~~~~~~l-~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v  137 (310)
T 3doj_A           94 VVFDKGGV-LEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFV  137 (310)
T ss_dssp             HHHSTTCG-GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHhCchhh-hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence                 001 12356778999998764433  23344566776543

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.41  E-value=0.00032  Score=68.07  Aligned_cols=64  Identities=27%  Similarity=0.304  Sum_probs=52.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRG-ARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G-~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      ++.|||+|.+|.+++..|.+.| .+|++++|++++++++++.++...  ..+..+ .. ++|+||-|+|
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~--~~~~~~-~~-~~D~vi~~v~   66 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVET--SATLPE-LH-SDDVLILAVK   66 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEE--ESSCCC-CC-TTSEEEECSC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEE--eCCHHH-Hh-cCCEEEEEeC
Confidence            6899999999999999999999 799999999999999988765432  123333 34 7899998887

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.40  E-value=0.00014  Score=74.16  Aligned_cols=108  Identities=20%  Similarity=0.227  Sum_probs=71.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+..+.+. +...+....  +++.+ .+.++|+|+.++|..  +.
T Consensus       160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~~~~--~~l~e-ll~~aDvV~l~~Plt--~~  233 (351)
T 3jtm_A          160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPEL-EKETGAKFV--EDLNE-MLPKCDVIVINMPLT--EK  233 (351)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHH-HHHHCCEEC--SCHHH-HGGGCSEEEECSCCC--TT
T ss_pred             ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHH-HHhCCCeEc--CCHHH-HHhcCCEEEECCCCC--HH
Confidence            4688999999999999999999999999999999998644332 334454332  23333 345789999999874  22


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCCC-chHHHHHHHH
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTPR-NTRLLREAAE  477 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P~-~T~ll~~A~~  477 (518)
                       ....+..+   .++++.+++|+.-.+. .+.-+.+|-+
T Consensus       234 -t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~  271 (351)
T 3jtm_A          234 -TRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVE  271 (351)
T ss_dssp             -TTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             -HHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHH
Confidence             12234443   3467778777765532 3433344433

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.40  E-value=0.0001  Score=65.83  Aligned_cols=120  Identities=23%  Similarity=0.234  Sum_probs=72.9

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--cc---ccccccCCCCccEEEEcCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HF---EYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~---~~l~~~~~~~~divInatp~g  438 (518)
                      ...+++++|+|+|.+|+.++..|.+.|++|++++|++++++.+.+..+...+  +.   +.+......++|+||.+++..
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~   95 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD   95 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCc
Confidence            3457899999999999999999999999999999999987665423332221  11   112221245689999998742


Q ss_pred             CCCCCCCCCCCh--hhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHH
Q 010101          439 MEPNSDQSPVPK--EALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFI  490 (518)
Q Consensus       439 ~~~~~~~~~~~~--~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~  490 (518)
                      ..   .. .+..  ..+.+...++-.+.+|...   +..++.|+.++.-.+...
T Consensus        96 ~~---~~-~~~~~~~~~~~~~~iv~~~~~~~~~---~~l~~~G~~vi~p~~~~a  142 (155)
T 2g1u_A           96 ST---NF-FISMNARYMFNVENVIARVYDPEKI---KIFEENGIKTICPAVLMI  142 (155)
T ss_dssp             HH---HH-HHHHHHHHTSCCSEEEEECSSGGGH---HHHHTTTCEEECHHHHHH
T ss_pred             HH---HH-HHHHHHHHHCCCCeEEEEECCHHHH---HHHHHCCCcEEcHHHHHH
Confidence            10   00 0000  1123344555555566544   445568887555444443

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.39  E-value=0.00012  Score=73.46  Aligned_cols=124  Identities=16%  Similarity=0.075  Sum_probs=84.5

Q ss_pred             cEEEEEccchhHHH-HHHHHHHC-CCeEE-EEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRA-LAFGAKSR-GARVI-IFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       368 k~vlvlGaGg~ara-ia~~L~~~-G~~v~-i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .++.|||+|.+|+. .+.+|.+. |+++. +++|+.++++++++.++... -+++++    ..+.|+|+.+||.....  
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l----~~~~D~V~i~tp~~~h~--   79 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL----AASCDAVFVHSSTASHF--   79 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHH----HTTCSEEEECSCTTHHH--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHh----hcCCCEEEEeCCchhHH--
Confidence            58999999999996 88888764 56654 99999999999999887542 123333    24689999999865321  


Q ss_pred             CCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHHHHHHHHHHHHhcC
Q 010101          444 DQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVEMFIRQALGQFRLFTG  502 (518)
Q Consensus       444 ~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~lw~g  502 (518)
                         ++....+..+.-|+  +-+|.-      ..+.+.|++.|..+..|..+-...+....+-+.|
T Consensus        80 ---~~~~~al~~G~~v~--~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~k~~i~  139 (319)
T 1tlt_A           80 ---DVVSTLLNAGVHVC--VDKPLAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQLA  139 (319)
T ss_dssp             ---HHHHHHHHTTCEEE--EESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCHHHHHHTTTGG
T ss_pred             ---HHHHHHHHcCCeEE--EeCCCCCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHhC
Confidence               12223455554333  234432      3577788889998888877776666666655543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.39  E-value=0.00012  Score=69.61  Aligned_cols=90  Identities=18%  Similarity=0.144  Sum_probs=62.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVII-FNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i-~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      -.++.|||+|.+|.+++..|.+.|.+|++ ++|++++++++++.++.....  +..+ ...++|+||.|+|.......-.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~--~~~~-~~~~aDvVilavp~~~~~~v~~   99 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKA--VELK-DALQADVVILAVPYDSIADIVT   99 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEE--CCHH-HHTTSSEEEEESCGGGHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCccc--ChHH-HHhcCCEEEEeCChHHHHHHHH
Confidence            35899999999999999999999998888 999999999999887643211  1111 2356899999998532211000


Q ss_pred             CCCChhhhcCCCEEEEEe
Q 010101          446 SPVPKEALKAYELVFDAV  463 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~  463 (518)
                       .+..  + ++.+++|+.
T Consensus       100 -~l~~--~-~~~ivi~~~  113 (220)
T 4huj_A          100 -QVSD--W-GGQIVVDAS  113 (220)
T ss_dssp             -TCSC--C-TTCEEEECC
T ss_pred             -Hhhc--c-CCCEEEEcC
Confidence             1111  2 356888876

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=97.35  E-value=0.00017  Score=72.79  Aligned_cols=94  Identities=13%  Similarity=0.262  Sum_probs=60.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+.+..+.+    . ......++.+ .+.++|+|+.++|..-  .
T Consensus       136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~----~-~~~~~~~l~e-ll~~aDvV~l~lPlt~--~  207 (324)
T 3hg7_A          136 QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF----D-QVYQLPALNK-MLAQADVIVSVLPATR--E  207 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC----S-EEECGGGHHH-HHHTCSEEEECCCCCS--S
T ss_pred             cccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh----h-cccccCCHHH-HHhhCCEEEEeCCCCH--H
Confidence            46789999999999999999999999999999999987432211    1 0112223333 3456899999988642  1


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeC
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYT  465 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~  465 (518)
                      + ...+..+   .++++.+++|+.-.
T Consensus       208 T-~~li~~~~l~~mk~gailIN~aRG  232 (324)
T 3hg7_A          208 T-HHLFTASRFEHCKPGAILFNVGRG  232 (324)
T ss_dssp             S-TTSBCTTTTTCSCTTCEEEECSCG
T ss_pred             H-HHHhHHHHHhcCCCCcEEEECCCc
Confidence            1 1112222   24556666666544

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.35  E-value=0.00039  Score=73.93  Aligned_cols=112  Identities=17%  Similarity=0.191  Sum_probs=76.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh--cCcc---cccccccccCCCCccEEEEcCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV--SGEA---LHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~--~~~~---~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      .++.|||.|-||.+++..|.+.|++|+++||++++++++.+.-  +...   .+++++.+ .+.++|+||-++|.+..  
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~-~l~~aDvVil~Vp~~~~--   81 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVS-KLKKPRRIILLVKAGQA--   81 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHH-TBCSSCEEEECSCSSHH--
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHh-hccCCCEEEEecCChHH--
Confidence            5799999999999999999999999999999999999987752  2111   12333322 23468999999987511  


Q ss_pred             CCCCCCC--hhhhcCCCEEEEEeeCCC-ch-HHHHHHHHCCCeee
Q 010101          443 SDQSPVP--KEALKAYELVFDAVYTPR-NT-RLLREAAEVGATVV  483 (518)
Q Consensus       443 ~~~~~~~--~~~l~~~~~v~Di~Y~P~-~T-~ll~~A~~~G~~~i  483 (518)
                      .+. .+.  ...++++.+++|..-... .| .+.+..+++|+.++
T Consensus        82 v~~-vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fv  125 (484)
T 4gwg_A           82 VDD-FIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFV  125 (484)
T ss_dssp             HHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHH-HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccc
Confidence            010 010  123567889999987643 33 33445567787654

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.35  E-value=0.0004  Score=70.76  Aligned_cols=106  Identities=13%  Similarity=0.222  Sum_probs=71.4

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-ccccccccCCCCccEEEEcCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-HFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      .+.|+++.|||.|.+|++++..|...|++|++++|+.++.  .+..++.... ++++    .+.++|+|+.++|..-  .
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~g~~~~~~l~e----ll~~aDvV~l~~P~t~--~  236 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG--VERALGLQRVSTLQD----LLFHSDCVTLHCGLNE--H  236 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT--HHHHHTCEECSSHHH----HHHHCSEEEECCCCCT--T
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh--hHhhcCCeecCCHHH----HHhcCCEEEEcCCCCH--H
Confidence            5789999999999999999999999999999999987642  3344554321 3333    2346899999998642  1


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCCC-chH-HHHHHHHC
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTPR-NTR-LLREAAEV  478 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P~-~T~-ll~~A~~~  478 (518)
                       ....+..+   .++++.+++|+.-.+. .+. |.+..++.
T Consensus       237 -t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g  276 (347)
T 1mx3_A          237 -NHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG  276 (347)
T ss_dssp             -CTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred             -HHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhC
Confidence             11224333   3567788888887653 333 44444443

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=97.34  E-value=0.00025  Score=72.68  Aligned_cols=94  Identities=20%  Similarity=0.187  Sum_probs=65.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+...  +.+...+....++++    .+.++|+|+.++|..-  .
T Consensus       172 ~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~--~~~~~~g~~~~~l~e----ll~~aDvV~l~~Plt~--~  243 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR--SMLEENGVEPASLED----VLTKSDFIFVVAAVTS--E  243 (365)
T ss_dssp             CCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH--HHHHHTTCEECCHHH----HHHSCSEEEECSCSSC--C
T ss_pred             cccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH--HHHhhcCeeeCCHHH----HHhcCCEEEEcCcCCH--H
Confidence            4578999999999999999999999999999999998532  223344443334433    3456899999998752  2


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeC
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYT  465 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~  465 (518)
                       ....+..+.   ++++.+++|+.-.
T Consensus       244 -T~~li~~~~l~~mk~gailIN~aRG  268 (365)
T 4hy3_A          244 -NKRFLGAEAFSSMRRGAAFILLSRA  268 (365)
T ss_dssp             ----CCCHHHHHTSCTTCEEEECSCG
T ss_pred             -HHhhcCHHHHhcCCCCcEEEECcCC
Confidence             122344433   5778888888733

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.33  E-value=0.00087  Score=70.88  Aligned_cols=92  Identities=26%  Similarity=0.245  Sum_probs=63.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|++++|+|.|.+|++++..|...|++|++++|+..++.+.. ..+....   ++.+ .+.++|+||.++  +..  
T Consensus       253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-~~g~~~~---~l~e-ll~~aDiVi~~~--~t~--  323 (479)
T 1v8b_A          253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGFNVV---TLDE-IVDKGDFFITCT--GNV--  323 (479)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTCEEC---CHHH-HTTTCSEEEECC--SSS--
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-HcCCEec---CHHH-HHhcCCEEEECC--Chh--
Confidence            468899999999999999999999999999999999998764422 2333222   3333 356789999886  211  


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCC
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTP  466 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P  466 (518)
                         ..+..+   .++++.+++|+.-.+
T Consensus       324 ---~lI~~~~l~~MK~gailiNvgrg~  347 (479)
T 1v8b_A          324 ---DVIKLEHLLKMKNNAVVGNIGHFD  347 (479)
T ss_dssp             ---SSBCHHHHTTCCTTCEEEECSSTT
T ss_pred             ---hhcCHHHHhhcCCCcEEEEeCCCC
Confidence               123332   245666777766553

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.33  E-value=0.0003  Score=68.66  Aligned_cols=49  Identities=27%  Similarity=0.468  Sum_probs=43.3

Q ss_pred             CcccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          362 TSPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       362 ~~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ...+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   65 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL   65 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            35688999999987 68999999999999999999999999988877665

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=97.33  E-value=0.00046  Score=69.52  Aligned_cols=107  Identities=12%  Similarity=0.104  Sum_probs=72.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNR-NYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nR-t~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|++++| +.++.  .+..++....  +++.+ .+.++|+|+.++|..-  
T Consensus       142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--~~~~~g~~~~--~~l~e-ll~~aDvVil~~p~~~--  214 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS--DEASYQATFH--DSLDS-LLSVSQFFSLNAPSTP--  214 (320)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH--HHHHHTCEEC--SSHHH-HHHHCSEEEECCCCCT--
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh--hhhhcCcEEc--CCHHH-HHhhCCEEEEeccCch--
Confidence            357899999999999999999999999999999999 87653  3445554432  12222 2346899999998642  


Q ss_pred             CCCCCCCChh---hhcCCCEEEEEeeCCC-ch-HHHHHHHH
Q 010101          442 NSDQSPVPKE---ALKAYELVFDAVYTPR-NT-RLLREAAE  477 (518)
Q Consensus       442 ~~~~~~~~~~---~l~~~~~v~Di~Y~P~-~T-~ll~~A~~  477 (518)
                      . ....+...   .++++.+++|+.-.+. .+ .+.+..++
T Consensus       215 ~-t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~  254 (320)
T 1gdh_A          215 E-TRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEA  254 (320)
T ss_dssp             T-TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred             H-HHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh
Confidence            1 11224432   3577889999987643 33 34444444

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.33  E-value=0.00026  Score=69.85  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=38.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA  409 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~  409 (518)
                      +++.|||+|.+|++++..|+..|++|++++|++++++++.+.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~   46 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR   46 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence            689999999999999999999999999999999998887665

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.31  E-value=0.00047  Score=69.87  Aligned_cols=93  Identities=16%  Similarity=0.249  Sum_probs=65.4

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .+.|+++.|||.|.+|++++..|...|++|++++|+.++  +.+..++....+++   + .+.++|+|+.++|...  . 
T Consensus       143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~--~~~~~~g~~~~~l~---e-~l~~aDiVil~vp~~~--~-  213 (333)
T 2d0i_A          143 SLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV--NVEKELKARYMDID---E-LLEKSDIVILALPLTR--D-  213 (333)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH--HHHHHHTEEECCHH---H-HHHHCSEEEECCCCCT--T-
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch--hhhhhcCceecCHH---H-HHhhCCEEEEcCCCCh--H-
Confidence            578999999999999999999999999999999999876  33444443322332   2 2346899999998752  1 


Q ss_pred             CCCCCCh---hhhcCCCEEEEEeeCC
Q 010101          444 DQSPVPK---EALKAYELVFDAVYTP  466 (518)
Q Consensus       444 ~~~~~~~---~~l~~~~~v~Di~Y~P  466 (518)
                      ....+..   ..++++ +++|+.-.+
T Consensus       214 t~~~i~~~~~~~mk~g-ilin~srg~  238 (333)
T 2d0i_A          214 TYHIINEERVKKLEGK-YLVNIGRGA  238 (333)
T ss_dssp             TTTSBCHHHHHHTBTC-EEEECSCGG
T ss_pred             HHHHhCHHHHhhCCCC-EEEECCCCc
Confidence            1122443   235677 888877554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.30  E-value=0.00042  Score=63.43  Aligned_cols=117  Identities=10%  Similarity=0.051  Sum_probs=71.8

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCccc--cc---cccccc-CCCCccEEEEcCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSR-GARVIIFNRNYERAKALADAVSGEAL--HF---EYLHEF-FPEKGMILANASA  436 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~-G~~v~i~nRt~~ka~~la~~~~~~~~--~~---~~l~~~-~~~~~divInatp  436 (518)
                      +..+.+++|+|+|.+|+.++..|.+. |++|++++|++++++.+.+ .+...+  +.   +.+.+. ...++|+||.+++
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            35577899999999999999999998 9999999999999887654 343322  11   113331 2567899999886


Q ss_pred             CCCCCCCCCCCCC-hhhhcCCCEEEEEeeCCCchHHHHHHHHCCCe-eeccHH
Q 010101          437 IGMEPNSDQSPVP-KEALKAYELVFDAVYTPRNTRLLREAAEVGAT-VVSGVE  487 (518)
Q Consensus       437 ~g~~~~~~~~~~~-~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~-~i~G~~  487 (518)
                      ....   ....+. ...+.+...++-.+..|...   +..++.|.. ++....
T Consensus       115 ~~~~---~~~~~~~~~~~~~~~~ii~~~~~~~~~---~~l~~~G~~~vi~p~~  161 (183)
T 3c85_A          115 HHQG---NQTALEQLQRRNYKGQIAAIAEYPDQL---EGLLESGVDAAFNIYS  161 (183)
T ss_dssp             SHHH---HHHHHHHHHHTTCCSEEEEEESSHHHH---HHHHHHTCSEEEEHHH
T ss_pred             ChHH---HHHHHHHHHHHCCCCEEEEEECCHHHH---HHHHHcCCCEEEchHH
Confidence            3100   000000 01123334455555554433   455667876 444444

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=97.30  E-value=8.3e-05  Score=75.09  Aligned_cols=94  Identities=20%  Similarity=0.249  Sum_probs=63.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+.++.+.+.     ......++.+ .+.++|+|+.++|..-  .
T Consensus       133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-----~~~~~~~l~e-ll~~aDvV~l~lPlt~--~  204 (324)
T 3evt_A          133 STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFH-----ETVAFTATAD-ALATANFIVNALPLTP--T  204 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCS-----EEEEGGGCHH-HHHHCSEEEECCCCCG--G
T ss_pred             ccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHh-----hccccCCHHH-HHhhCCEEEEcCCCch--H
Confidence            457899999999999999999999999999999999876532211     0112233333 3456899999988642  1


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeC
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYT  465 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~  465 (518)
                       ....+..+.   ++++.+++|+.-.
T Consensus       205 -t~~li~~~~l~~mk~gailIN~aRG  229 (324)
T 3evt_A          205 -THHLFSTELFQQTKQQPMLINIGRG  229 (324)
T ss_dssp             -GTTCBSHHHHHTCCSCCEEEECSCG
T ss_pred             -HHHhcCHHHHhcCCCCCEEEEcCCC
Confidence             112243332   4566777776654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.30  E-value=0.00019  Score=69.35  Aligned_cols=68  Identities=18%  Similarity=0.163  Sum_probs=52.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA----RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~----~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      +++.|||+|.+|.+++..|.+.|+    +|++++|++++++++++.++....  .+..+ ...++|+||-|++..
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~--~~~~e-~~~~aDvVilav~~~   74 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTT--TDNNE-VAKNADILILSIKPD   74 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEEC--SCHHH-HHHHCSEEEECSCTT
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEe--CChHH-HHHhCCEEEEEeCHH
Confidence            579999999999999999999997    999999999999999887764321  11111 223478888888643

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=97.29  E-value=0.00037  Score=70.51  Aligned_cols=108  Identities=12%  Similarity=0.095  Sum_probs=72.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+..+.+ .+..++....++++    .+.++|+|+.++|..  +.
T Consensus       141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~l~e----ll~~aDvV~l~~P~t--~~  213 (330)
T 4e5n_A          141 TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQ-TEQRLGLRQVACSE----LFASSDFILLALPLN--AD  213 (330)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHH-HHHHHTEEECCHHH----HHHHCSEEEECCCCS--TT
T ss_pred             CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHh-HHHhcCceeCCHHH----HHhhCCEEEEcCCCC--HH
Confidence            457899999999999999999999999999999999874332 23344433333433    234689999999864  22


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeCC-CchHHHHHHHHC
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYTP-RNTRLLREAAEV  478 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~P-~~T~ll~~A~~~  478 (518)
                       ....+..+.   ++++.+++|+.-.+ ..+.-+.+|-+.
T Consensus       214 -t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~  252 (330)
T 4e5n_A          214 -TLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALER  252 (330)
T ss_dssp             -TTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH
T ss_pred             -HHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHh
Confidence             122344433   56778888887653 234333444333

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.29  E-value=0.00021  Score=70.51  Aligned_cols=68  Identities=13%  Similarity=0.208  Sum_probs=52.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA---RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~---~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      .+++.|||+|-+|.+++..|.+.|+   +|++++|+.++++++++.++....  .+..+ ...++|+||-|+|.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~--~~~~~-~~~~aDvVilav~p   73 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTT--QDNRQ-GALNADVVVLAVKP   73 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEE--SCHHH-HHSSCSEEEECSCG
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEe--CChHH-HHhcCCeEEEEeCH
Confidence            3679999999999999999999997   899999999999999887664321  11112 23457888887764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.00039  Score=74.33  Aligned_cols=113  Identities=18%  Similarity=0.178  Sum_probs=74.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-Hh---cCcc-cccccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD-AV---SGEA-LHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~-~~---~~~~-~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..++.|||+|.||.+++..|++.|++|+++||++++++++.+ ..   +... .+.+++.. .++++|+||-++|.+.. 
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~-~l~~aDvVil~Vp~~~~-   87 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFIS-KLKRPRKVMLLVKAGAP-   87 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHH-TSCSSCEEEECCCSSHH-
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHh-cCCCCCEEEEEcCChHH-
Confidence            357999999999999999999999999999999999999887 32   2111 12222211 23358999999986511 


Q ss_pred             CCCCCCCC--hhhhcCCCEEEEEeeCCC-ch-HHHHHHHHCCCeee
Q 010101          442 NSDQSPVP--KEALKAYELVFDAVYTPR-NT-RLLREAAEVGATVV  483 (518)
Q Consensus       442 ~~~~~~~~--~~~l~~~~~v~Di~Y~P~-~T-~ll~~A~~~G~~~i  483 (518)
                       .+. .+.  ...++++.+++|+.-... .| .+.+..+++|..++
T Consensus        88 -v~~-vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v  131 (497)
T 2p4q_A           88 -VDA-LINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFV  131 (497)
T ss_dssp             -HHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             -HHH-HHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCcee
Confidence             010 010  123566789999876533 33 34455566777654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.29  E-value=0.00023  Score=68.96  Aligned_cols=67  Identities=16%  Similarity=0.168  Sum_probs=53.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      .++.|||+|.+|++++..|.+.|.+|++++|++++++++++.++...  ..++.+ ...++|+||.++|.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~--~~~~~~-~~~~~D~Vi~~v~~   70 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY--AMSHQD-LIDQVDLVILGIKP   70 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB--CSSHHH-HHHTCSEEEECSCG
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEe--eCCHHH-HHhcCCEEEEEeCc
Confidence            47999999999999999999989899999999999999988776432  112222 22357999999974

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.28  E-value=0.00049  Score=60.34  Aligned_cols=117  Identities=19%  Similarity=0.143  Sum_probs=74.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-----ccccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-----HFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-----~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..+++|+|+|.+|+.++..|.+.|++|++++|++++.+.+.+ .+...+     ..+.+......++|++|.+++-... 
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~-   84 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE-   84 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH-
Confidence            357999999999999999999999999999999999988765 343221     1112222235678999998863210 


Q ss_pred             CCCCCCCC--hhhhcCCCEEEEEeeCCCchHHHHHHHHCCCe-eeccHHHHHH
Q 010101          442 NSDQSPVP--KEALKAYELVFDAVYTPRNTRLLREAAEVGAT-VVSGVEMFIR  491 (518)
Q Consensus       442 ~~~~~~~~--~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~-~i~G~~ml~~  491 (518)
                        . ..+.  ...+.+...++-.+..|...   +..++.|+. +++--.....
T Consensus        85 --n-~~~~~~a~~~~~~~~iiar~~~~~~~---~~l~~~G~d~vi~p~~~~a~  131 (140)
T 3fwz_A           85 --A-GEIVASARAKNPDIEIIARAHYDDEV---AYITERGANQVVMGEREIAR  131 (140)
T ss_dssp             --H-HHHHHHHHHHCSSSEEEEEESSHHHH---HHHHHTTCSEEEEHHHHHHH
T ss_pred             --H-HHHHHHHHHHCCCCeEEEEECCHHHH---HHHHHCCCCEEECchHHHHH
Confidence              0 0000  01133444566666665443   555678986 5554444433

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.28  E-value=0.00011  Score=73.21  Aligned_cols=109  Identities=14%  Similarity=0.128  Sum_probs=72.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQS  446 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~  446 (518)
                      .+++.|||+|.+|++++..|.+.|++|+++||++++++++.+. +...  ..++.+ ... +|+||.++|....  ... 
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~-~~~-aDvvi~~vp~~~~--~~~-   86 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEA-GATL--ADSVAD-VAA-ADLIHITVLDDAQ--VRE-   86 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHT-TCEE--CSSHHH-HTT-SSEEEECCSSHHH--HHH-
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC-CCEE--cCCHHH-HHh-CCEEEEECCChHH--HHH-
Confidence            3589999999999999999999999999999999998888754 3221  123333 345 8999999874310  000 


Q ss_pred             CCC--hhhhcCCCEEEEEeeCCCch--HHHHHHHHCCCeee
Q 010101          447 PVP--KEALKAYELVFDAVYTPRNT--RLLREAAEVGATVV  483 (518)
Q Consensus       447 ~~~--~~~l~~~~~v~Di~Y~P~~T--~ll~~A~~~G~~~i  483 (518)
                      .+.  ...++++.+++|....+..|  .+.+..++.|+.++
T Consensus        87 v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~  127 (296)
T 3qha_A           87 VVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIV  127 (296)
T ss_dssp             HHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEE
T ss_pred             HHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEE
Confidence            010  01246778999998765433  23344455676554

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=97.27  E-value=0.00016  Score=71.81  Aligned_cols=103  Identities=18%  Similarity=0.189  Sum_probs=70.5

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .+.|+++.|||.|.+|++++..|...|++|+.++|+.++.+.      ..  ..+++.+ .+.++|+|+.++|..-  . 
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------~~--~~~~l~e-ll~~aDiV~l~~P~t~--~-  186 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------DV--ISESPAD-LFRQSDFVLIAIPLTD--K-  186 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC------SE--ECSSHHH-HHHHCSEEEECCCCCT--T-
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc------cc--ccCChHH-HhhccCeEEEEeeccc--c-
Confidence            578999999999999999999999999999999998765321      11  1123333 3456899999998642  2 


Q ss_pred             CCCCCChh---hhcCCCEEEEEeeCC-CchH-HHHHHHHC
Q 010101          444 DQSPVPKE---ALKAYELVFDAVYTP-RNTR-LLREAAEV  478 (518)
Q Consensus       444 ~~~~~~~~---~l~~~~~v~Di~Y~P-~~T~-ll~~A~~~  478 (518)
                      ....+..+   .++++.+++|+.-.+ ..+. |.+..++.
T Consensus       187 t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  226 (290)
T 3gvx_A          187 TRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKER  226 (290)
T ss_dssp             TTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred             chhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhc
Confidence            12234443   357889999998664 3444 44444443

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=97.26  E-value=0.00052  Score=68.60  Aligned_cols=90  Identities=16%  Similarity=0.118  Sum_probs=63.9

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .+.|+++.|||.|.+|++++..|...|++|++++|+.+ . .     +.  ....++.+ .+.++|+|+.++|..-.   
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~-~-----~~--~~~~~l~e-ll~~aDvV~l~~P~~~~---  187 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-E-G-----PW--RFTNSLEE-ALREARAAVCALPLNKH---  187 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-C-S-----SS--CCBSCSHH-HHTTCSEEEECCCCSTT---
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-c-c-----Cc--ccCCCHHH-HHhhCCEEEEeCcCchH---
Confidence            57899999999999999999999999999999999876 1 1     21  12223333 34578999999987521   


Q ss_pred             CCCCCChh---hhcCCCEEEEEeeCC
Q 010101          444 DQSPVPKE---ALKAYELVFDAVYTP  466 (518)
Q Consensus       444 ~~~~~~~~---~l~~~~~v~Di~Y~P  466 (518)
                      ....+..+   .++++.+++|+.-.+
T Consensus       188 t~~~i~~~~l~~mk~gailin~srg~  213 (303)
T 1qp8_A          188 TRGLVKYQHLALMAEDAVFVNVGRAE  213 (303)
T ss_dssp             TTTCBCHHHHTTSCTTCEEEECSCGG
T ss_pred             HHHHhCHHHHhhCCCCCEEEECCCCc
Confidence            11224432   356778888887654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.26  E-value=0.00048  Score=65.00  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-----ccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-----HFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-----~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      +++|+|+|.+|+.++..|.+.|.+|++++|++++++++++..+...+     +.+.+......++|++|.+|+-...   
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~---   78 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEV---   78 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHH---
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHH---
Confidence            58999999999999999999999999999999999999877654322     1122333246789999988863210   


Q ss_pred             CCCCCCh--hhhcCCCEEEEEeeCCCchHHHHHHHHCCCe-eeccHHHH
Q 010101          444 DQSPVPK--EALKAYELVFDAVYTPRNTRLLREAAEVGAT-VVSGVEMF  489 (518)
Q Consensus       444 ~~~~~~~--~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~-~i~G~~ml  489 (518)
                      + ..+..  ..+.+..-++=.+.+|....   ..++.|.. +++-....
T Consensus        79 n-~~~~~~a~~~~~~~~iia~~~~~~~~~---~l~~~G~d~vi~p~~~~  123 (218)
T 3l4b_C           79 N-LFIAQLVMKDFGVKRVVSLVNDPGNME---IFKKMGITTVLNLTTLI  123 (218)
T ss_dssp             H-HHHHHHHHHTSCCCEEEECCCSGGGHH---HHHHHTCEECCCHHHHH
T ss_pred             H-HHHHHHHHHHcCCCeEEEEEeCcchHH---HHHHCCCCEEECHHHHH
Confidence            0 00000  01123333444455565543   34677886 45544433

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=97.26  E-value=0.00021  Score=72.71  Aligned_cols=108  Identities=18%  Similarity=0.125  Sum_probs=70.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|..++|+..+.+...   +....  +++.+ .+.++|+|+.++|..-  .
T Consensus       169 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---g~~~~--~~l~e-ll~~sDvV~l~~Plt~--~  240 (345)
T 4g2n_A          169 MGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE---GAIYH--DTLDS-LLGASDIFLIAAPGRP--E  240 (345)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT---TCEEC--SSHHH-HHHTCSEEEECSCCCG--G
T ss_pred             cccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc---CCeEe--CCHHH-HHhhCCEEEEecCCCH--H
Confidence            467899999999999999999999999999999999864432211   33322  23333 3456899999998742  1


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCCC-chHHHHHHHHCC
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTPR-NTRLLREAAEVG  479 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P~-~T~ll~~A~~~G  479 (518)
                       ....+..+   .++++.+++|+.-.+. .+.-+.+|-+.|
T Consensus       241 -T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  280 (345)
T 4g2n_A          241 -LKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSK  280 (345)
T ss_dssp             -GTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             -HHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence             11234443   3567788888775542 344344444433

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.26  E-value=0.00044  Score=65.90  Aligned_cols=73  Identities=12%  Similarity=0.090  Sum_probs=52.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE-RAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~-ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      .+++|++|||+|+|.+|...+..|.+.|++|+|++++.. ..+++++..+..++. .......+.++|+||-||.
T Consensus        27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~-~~~~~~dL~~adLVIaAT~  100 (223)
T 3dfz_A           27 LDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKR-KKVGEEDLLNVFFIVVATN  100 (223)
T ss_dssp             ECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEEC-SCCCGGGSSSCSEEEECCC
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEE-CCCCHhHhCCCCEEEECCC
Confidence            568899999999999999999999999999999998753 456666653322211 1111113456899998874

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=97.25  E-value=0.00022  Score=73.28  Aligned_cols=67  Identities=18%  Similarity=0.308  Sum_probs=50.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|..++|+.+...     .+..   +.++.+ .+.++|+|+.++|..
T Consensus       115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~~~~---~~sl~e-ll~~aDiV~l~~Plt  181 (381)
T 3oet_A          115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----DEGD---FRTLDE-LVQEADVLTFHTPLY  181 (381)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----CCSC---BCCHHH-HHHHCSEEEECCCCC
T ss_pred             CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----cCcc---cCCHHH-HHhhCCEEEEcCcCC
Confidence            568899999999999999999999999999999998654321     1112   223333 334689999999864

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.25  E-value=0.00061  Score=65.82  Aligned_cols=76  Identities=28%  Similarity=0.388  Sum_probs=57.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKG  428 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~  428 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.+++++++++++...    .++.+   +...      .....
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   84 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKV   84 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            4578999999988 689999999999999999999999999999998876432    12211   1110      11357


Q ss_pred             cEEEEcCCCC
Q 010101          429 MILANASAIG  438 (518)
Q Consensus       429 divInatp~g  438 (518)
                      |++||+....
T Consensus        85 d~li~~Ag~~   94 (261)
T 3n74_A           85 DILVNNAGIG   94 (261)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCccC
Confidence            9999988654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.24  E-value=0.00034  Score=69.46  Aligned_cols=48  Identities=21%  Similarity=0.365  Sum_probs=42.4

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY------------------ERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~------------------~ka~~la~~~~  411 (518)
                      .+++++|+|+|+||.|..++..|+..|+ +|+|++++.                  .|++.+++.+.
T Consensus        33 kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~   99 (292)
T 3h8v_A           33 KIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLR   99 (292)
T ss_dssp             GGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHH
T ss_pred             HHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHH
Confidence            4678899999999999999999999999 999999887                  78887777663

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.23  E-value=0.00074  Score=71.68  Aligned_cols=68  Identities=26%  Similarity=0.254  Sum_probs=51.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInat  435 (518)
                      ..+.|++++|+|.|.+|++++..|...|++|++++|++.++.+.. ..+....++   .+ .+.++|+||.++
T Consensus       273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-~~G~~~~~l---~e-ll~~aDiVi~~~  340 (494)
T 3d64_A          273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-MEGYRVVTM---EY-AADKADIFVTAT  340 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-TTTCEECCH---HH-HTTTCSEEEECS
T ss_pred             cccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-HcCCEeCCH---HH-HHhcCCEEEECC
Confidence            458899999999999999999999999999999999998753322 223333233   33 345688888886

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.22  E-value=0.011  Score=61.75  Aligned_cols=133  Identities=18%  Similarity=0.151  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNR----------NYERAKAL  406 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~-i~nR----------t~~ka~~l  406 (518)
                      +.|.+.+++..++.. |        .+++++++.|.|.|.+|+.++..|.++|++|+ |.++          +.+...++
T Consensus       215 g~Gv~~~~~~~~~~~-g--------~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~  285 (440)
T 3aog_A          215 GRGVFITAAAAAEKI-G--------LQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRH  285 (440)
T ss_dssp             HHHHHHHHHHHHHHH-T--------CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-C--------CCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHH
Confidence            567777777666543 3        46889999999999999999999999999655 8887          78888888


Q ss_pred             HHHhcC-------cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCC
Q 010101          407 ADAVSG-------EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVG  479 (518)
Q Consensus       407 a~~~~~-------~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G  479 (518)
                      .+..+.       +.++-+++   ...++||+|.|+..+..   +..  +...+ ...+|++-.-.|-...-.+.-+++|
T Consensus       286 ~~~~g~i~~y~~a~~i~~~ei---~~~~~DIlvPcA~~n~i---~~~--na~~l-~ak~VvEgAN~p~t~eA~~iL~~~G  356 (440)
T 3aog_A          286 VQEFGGVRGYPKAEPLPAADF---WGLPVEFLVPAALEKQI---TEQ--NAWRI-RARIVAEGANGPTTPAADDILLEKG  356 (440)
T ss_dssp             HHHTSSSTTCTTSEECCHHHH---TTCCCSEEEECSSSSCB---CTT--TGGGC-CCSEEECCSSSCBCHHHHHHHHHHT
T ss_pred             HHhcCCcccCCCceEcCchhh---hcCCCcEEEecCCcCcc---chh--hHHHc-CCcEEEecCccccCHHHHHHHHHCC
Confidence            777542       11111122   12468999998764432   211  12234 4578999987775333333346789


Q ss_pred             CeeeccHHH
Q 010101          480 ATVVSGVEM  488 (518)
Q Consensus       480 ~~~i~G~~m  488 (518)
                      +.++++.--
T Consensus       357 I~~~PD~~a  365 (440)
T 3aog_A          357 VLVVPDVIA  365 (440)
T ss_dssp             CEEECHHHH
T ss_pred             CEEEChHHH
Confidence            998876543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.22  E-value=0.00061  Score=65.60  Aligned_cols=75  Identities=32%  Similarity=0.384  Sum_probs=56.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~d  429 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.+++++++++++....    ++.+   +...      .....|
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGID   82 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCC
Confidence            467899999987 6899999999999999999999999999999888764321    2211   1110      113579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus        83 ~lv~nAg~~   91 (247)
T 3rwb_A           83 ILVNNASIV   91 (247)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.22  E-value=0.00049  Score=66.64  Aligned_cols=75  Identities=28%  Similarity=0.332  Sum_probs=56.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~d  429 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.+++++++++++...    .++.+   +...      .....|
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   84 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLD   84 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999987 689999999999999999999999999999988876432    12211   1110      123689


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus        85 ~lv~~Ag~~   93 (259)
T 4e6p_A           85 ILVNNAALF   93 (259)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCcC
Confidence            999987643

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.21  E-value=0.00039  Score=70.87  Aligned_cols=97  Identities=15%  Similarity=0.236  Sum_probs=66.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAK-SRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~-~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..+.|+++.|||.|.+|++++..|. ..|++|++++|+.++.+. +..++....  .++.+ .+.++|+|+.++|.... 
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~-~~~~g~~~~--~~l~e-ll~~aDvVil~vp~~~~-  233 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAET-EKALGAERV--DSLEE-LARRSDCVSVSVPYMKL-  233 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHH-HHHHTCEEC--SSHHH-HHHHCSEEEECCCCSGG-
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhh-HhhcCcEEe--CCHHH-HhccCCEEEEeCCCChH-
Confidence            4578999999999999999999999 999999999998765544 233443332  12222 23468999999987521 


Q ss_pred             CCCCCCCCh---hhhcCCCEEEEEeeCC
Q 010101          442 NSDQSPVPK---EALKAYELVFDAVYTP  466 (518)
Q Consensus       442 ~~~~~~~~~---~~l~~~~~v~Di~Y~P  466 (518)
                        ....+..   ..++++.+++|+.-.+
T Consensus       234 --t~~li~~~~l~~mk~gailin~srg~  259 (348)
T 2w2k_A          234 --THHLIDEAFFAAMKPGSRIVNTARGP  259 (348)
T ss_dssp             --GTTCBCHHHHHHSCTTEEEEECSCGG
T ss_pred             --HHHHhhHHHHhcCCCCCEEEECCCCc
Confidence              1112332   2356777887776653

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.21  E-value=0.00052  Score=66.44  Aligned_cols=75  Identities=17%  Similarity=0.184  Sum_probs=56.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----cccccc---ccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEYL---HEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~l---~~~------~~~~~d  429 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.+++++++++++...    .++.+.   ...      .....|
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAID   84 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            467899999987 689999999999999999999999999999988876432    122111   100      123579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus        85 ~lv~nAg~~   93 (255)
T 4eso_A           85 LLHINAGVS   93 (255)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.21  E-value=0.00082  Score=65.76  Aligned_cols=87  Identities=18%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV  448 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~  448 (518)
                      ++.|||+|.+|.+++..|.+.|++|++++|+.++++.+. +.+.......++.+ . .++|+||.|+|......    .+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~-~~~D~vi~av~~~~~~~----~~   74 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-ERQLVDEAGQDLSL-L-QTAKIIFLCTPIQLILP----TL   74 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTSCSEEESCGGG-G-TTCSEEEECSCHHHHHH----HH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hCCCCccccCCHHH-h-CCCCEEEEECCHHHHHH----HH
Confidence            689999999999999999999999999999999988875 44432111223434 3 57899999998532110    01


Q ss_pred             C--hhhhcCCCEEEEE
Q 010101          449 P--KEALKAYELVFDA  462 (518)
Q Consensus       449 ~--~~~l~~~~~v~Di  462 (518)
                      .  ...++++.+++|+
T Consensus        75 ~~l~~~~~~~~~vv~~   90 (279)
T 2f1k_A           75 EKLIPHLSPTAIVTDV   90 (279)
T ss_dssp             HHHGGGSCTTCEEEEC
T ss_pred             HHHHhhCCCCCEEEEC
Confidence            1  0124556778886

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.21  E-value=0.00062  Score=65.27  Aligned_cols=76  Identities=26%  Similarity=0.320  Sum_probs=56.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc--CCCCccEEE
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF--FPEKGMILA  432 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~--~~~~~divI  432 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+....    .++.+   +...  .....|++|
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li   89 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILV   89 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEE
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            5678999999987 689999999999999999999999999999988875422    11111   1110  234679999


Q ss_pred             EcCCCC
Q 010101          433 NASAIG  438 (518)
Q Consensus       433 natp~g  438 (518)
                      |+....
T Consensus        90 ~~Ag~~   95 (249)
T 3f9i_A           90 CNAGIT   95 (249)
T ss_dssp             ECCC--
T ss_pred             ECCCCC
Confidence            987543

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=97.20  E-value=0.00031  Score=70.53  Aligned_cols=90  Identities=22%  Similarity=0.286  Sum_probs=63.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.+     .     ...++.+ .+.++|+|+.++|..-.  
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-----~-----~~~~l~e-ll~~aDvV~l~~p~~~~--  206 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP-----Y-----PFLSLEE-LLKEADVVSLHTPLTPE--  206 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-----S-----CBCCHHH-HHHHCSEEEECCCCCTT--
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc-----c-----ccCCHHH-HHhhCCEEEEeCCCChH--
Confidence            357899999999999999999999999999999999976542     1     1222322 23468999999886421  


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCC
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTP  466 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P  466 (518)
                       ....+..+   .++++.+++|+.-.+
T Consensus       207 -t~~li~~~~l~~mk~ga~lin~srg~  232 (311)
T 2cuk_A          207 -THRLLNRERLFAMKRGAILLNTARGA  232 (311)
T ss_dssp             -TTTCBCHHHHTTSCTTCEEEECSCGG
T ss_pred             -HHhhcCHHHHhhCCCCcEEEECCCCC
Confidence             11124322   356778888887654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.20  E-value=0.00057  Score=69.13  Aligned_cols=107  Identities=15%  Similarity=0.206  Sum_probs=71.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.++++.|||.|.+|++++..|...|++|++++|+.++.+.. ...+....+++   + .+.++|+||.++|....  
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~~l~---e-~l~~aDvVi~~vp~~~~--  223 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEA-AEFQAEFVSTP---E-LAAQSDFIVVACSLTPA--  223 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHH-HTTTCEECCHH---H-HHHHCSEEEECCCCCTT--
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHH-HhcCceeCCHH---H-HHhhCCEEEEeCCCChH--
Confidence            35789999999999999999999999999999999987665443 33333222222   2 23468999999987521  


Q ss_pred             CCCCCCCh---hhhcCCCEEEEEeeCCC-c-hHHHHHHHH
Q 010101          443 SDQSPVPK---EALKAYELVFDAVYTPR-N-TRLLREAAE  477 (518)
Q Consensus       443 ~~~~~~~~---~~l~~~~~v~Di~Y~P~-~-T~ll~~A~~  477 (518)
                       ....+..   ..++++.+++++.-.+. . ..+.+..++
T Consensus       224 -t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~  262 (330)
T 2gcg_A          224 -TEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALAS  262 (330)
T ss_dssp             -TTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred             -HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHc
Confidence             1122332   23567788888876543 3 344444444

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=97.20  E-value=0.00074  Score=67.11  Aligned_cols=43  Identities=19%  Similarity=0.268  Sum_probs=39.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA  409 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~  409 (518)
                      +.|+|.|||+|-||.++|..|+ .|++|+++||++++++++.+.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~   53 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ   53 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH
Confidence            4689999999999999999999 999999999999999888766

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.20  E-value=0.00076  Score=66.13  Aligned_cols=93  Identities=13%  Similarity=0.059  Sum_probs=62.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcccccccccccCCC-CccEEEEcCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPE-KGMILANASAIGMEPNSD  444 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~-~~divInatp~g~~~~~~  444 (518)
                      +++.|||+|.+|.+++..|.+.|+  +|++++|+.++.+.+. ..+.......++.+ ... ++|+||.|+|......  
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~aDvVilavp~~~~~~--   77 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSIAK-VEDFSPDFVMLSSPVRTFRE--   77 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCGGG-GGGTCCSEEEECSCHHHHHH--
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-HCCCcccccCCHHH-HhcCCCCEEEEcCCHHHHHH--
Confidence            479999999999999999999997  8999999999887654 44432111223333 345 7899999998642110  


Q ss_pred             CCCCC--hhhhcCCCEEEEEeeCC
Q 010101          445 QSPVP--KEALKAYELVFDAVYTP  466 (518)
Q Consensus       445 ~~~~~--~~~l~~~~~v~Di~Y~P  466 (518)
                        .+.  ...++++.++.|+...+
T Consensus        78 --v~~~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           78 --IAKKLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             --HHHHHHHHSCTTCEEEECCSCC
T ss_pred             --HHHHHHhhCCCCcEEEECCCCc
Confidence              011  11245667888875443

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.19  E-value=0.00064  Score=66.16  Aligned_cols=49  Identities=20%  Similarity=0.340  Sum_probs=44.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++||.++|.|+ +|.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~   52 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR   52 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence            3588999999988 589999999999999999999999999999988774

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.19  E-value=0.0012  Score=62.63  Aligned_cols=44  Identities=27%  Similarity=0.390  Sum_probs=40.0

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +|+++|.|+ ||.|++++..|++.|++|.+++|+.++.+++++++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHEL   46 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            588999987 68999999999999999999999999988887665

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.19  E-value=0.00069  Score=68.00  Aligned_cols=94  Identities=13%  Similarity=0.011  Sum_probs=64.4

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      .+++.|||+|.+|.+++..|.+.|+  +|++++|++++++.+. +.+.......++.+....++|+||.|+|......  
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~--  109 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE--  109 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHH--
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHH--
Confidence            4789999999999999999999998  9999999999887654 3443111112222101356899999998753210  


Q ss_pred             CCCCC--hhhhcCCCEEEEEeeC
Q 010101          445 QSPVP--KEALKAYELVFDAVYT  465 (518)
Q Consensus       445 ~~~~~--~~~l~~~~~v~Di~Y~  465 (518)
                        .+.  ...++++.+|.|+...
T Consensus       110 --vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          110 --IAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             --HHHHHHHHSCTTCEEEECCSC
T ss_pred             --HHHHHhhccCCCcEEEECCCC
Confidence              011  1135678899998654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.18  E-value=0.00072  Score=66.61  Aligned_cols=65  Identities=12%  Similarity=0.092  Sum_probs=49.7

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      .++.|||+ |.+|++++..|.+.|++|++++|+.++++.+.+ .+...   .+..+ ...++|+||.|+|.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-~g~~~---~~~~~-~~~~aDvVi~av~~   77 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-MGIPL---TDGDG-WIDEADVVVLALPD   77 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-TTCCC---CCSSG-GGGTCSEEEECSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-cCCCc---CCHHH-HhcCCCEEEEcCCc
Confidence            58999999 999999999999999999999999999888765 44222   12222 23456777777764

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.18  E-value=0.00087  Score=65.77  Aligned_cols=76  Identities=21%  Similarity=0.298  Sum_probs=57.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKG  428 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~  428 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+.+++++++++++....    ++.+   +...      .....
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4578899999987 6899999999999999999999999999999888764321    2211   1110      11357


Q ss_pred             cEEEEcCCCC
Q 010101          429 MILANASAIG  438 (518)
Q Consensus       429 divInatp~g  438 (518)
                      |++||+....
T Consensus       103 D~lv~nAg~~  112 (277)
T 4dqx_A          103 DVLVNNAGFG  112 (277)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCcC
Confidence            9999987654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.17  E-value=0.00098  Score=66.01  Aligned_cols=42  Identities=19%  Similarity=0.301  Sum_probs=38.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA  409 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~  409 (518)
                      .++.|||+|.+|.+++..|.+.|.+|++++|+.++++++.+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~   45 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN   45 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC
Confidence            479999999999999999999999999999999999888765

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.17  E-value=0.00044  Score=67.89  Aligned_cols=107  Identities=18%  Similarity=0.176  Sum_probs=70.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV  448 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~  448 (518)
                      ++.|||+|.+|++++..|.+ |++|++++|+.++++.+.+. +.....   +.+ ...++|+||.|+|....  ... .+
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-g~~~~~---~~~-~~~~~D~vi~~v~~~~~--~~~-v~   73 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-FGSEAV---PLE-RVAEARVIFTCLPTTRE--VYE-VA   73 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH-HCCEEC---CGG-GGGGCSEEEECCSSHHH--HHH-HH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC-CCcccC---HHH-HHhCCCEEEEeCCChHH--HHH-HH
Confidence            68999999999999999999 99999999999999888765 332222   222 34568999999985320  000 01


Q ss_pred             C--hhhhcCCCEEEEEeeCCCc-h-HHHHHHHHCCCeeec
Q 010101          449 P--KEALKAYELVFDAVYTPRN-T-RLLREAAEVGATVVS  484 (518)
Q Consensus       449 ~--~~~l~~~~~v~Di~Y~P~~-T-~ll~~A~~~G~~~i~  484 (518)
                      .  ...++++.+++|+...... + .+.+..++.|..+++
T Consensus        74 ~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~  113 (289)
T 2cvz_A           74 EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLD  113 (289)
T ss_dssp             HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEE
T ss_pred             HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            0  0134567788888654322 2 333444555665543

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.16  E-value=0.0016  Score=66.83  Aligned_cols=190  Identities=19%  Similarity=0.239  Sum_probs=108.5

Q ss_pred             HHHH-cCCCceEEecccCcHHHHHHHhc--CCCCCEEEecccchHHHHhcccccChhhhhcCceeEEEEeccCCeEEEee
Q 010101          259 AFRH-TRFNGIYVPMLVDDVKEFFRTYS--GTDFAGFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYN  335 (518)
Q Consensus       259 ~f~~-~gl~~~y~~~~~~~l~~~~~~l~--~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~iGavNTi~~~~~~g~l~G~N  335 (518)
                      +|++ -|+|..=+.+++.+.++|++.++  .+.|.|++.--=-..+.++.++++-..                +.+-=+|
T Consensus        98 Lf~~~agid~~pi~Ldv~~~dEfv~~v~~~~p~F~~I~lED~~~p~~f~il~~~r~~----------------~~ipvf~  161 (398)
T 2a9f_A           98 LFKAFAGVDAIPIVLDTKDTEEIISIVKALAPTFGGINLEDISAPRCFEIEQRLIKE----------------CHIPVFH  161 (398)
T ss_dssp             HHHHHSSCEEEEEECCCCCHHHHHHHHHHHGGGCSEEEECSCCTTHHHHHHHHHHHH----------------CSSCEEE
T ss_pred             HHHhccCCceeeeEeCCCCHHHHHHHHHHcCCceeEeccccCCChHHHHHHHHhhhc----------------CCcceec
Confidence            3443 56774433455568888877663  478999876421123334444332222                1122355


Q ss_pred             cCHHH--HH--HHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH----HH---H
Q 010101          336 TDCES--AI--SAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY----ER---A  403 (518)
Q Consensus       336 TD~~G--~~--~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~----~k---a  403 (518)
                      -|..|  ++  .++-..++ ..|        ..++..+++|+|+|-+|.+++..|..+|+ +|++++|+-    +|   .
T Consensus       162 DDiqGTa~V~lAall~al~-l~g--------~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L  232 (398)
T 2a9f_A          162 DDQHGTAIVVLAAIFNSLK-LLK--------KSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQL  232 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TTT--------CCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSC
T ss_pred             chhhhHHHHHHHHHHHHHH-HhC--------CCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccc
Confidence            56444  21  22222222 122        46788899999999999999999999999 999999972    11   2


Q ss_pred             H----HHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhh---cCCCEEEEEee-CCCchHHHHHH
Q 010101          404 K----ALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEAL---KAYELVFDAVY-TPRNTRLLREA  475 (518)
Q Consensus       404 ~----~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l---~~~~~v~Di~Y-~P~~T~ll~~A  475 (518)
                      .    .+++..+. ......|.+ .+.++|++|-++..|        .+.++.+   .++.++|++.- .|+-||  ++|
T Consensus       233 ~~~k~~fa~~~~~-~~~~~~L~e-av~~ADV~IG~Sapg--------l~T~EmVk~Ma~~pIIfalsNPt~E~~p--e~a  300 (398)
T 2a9f_A          233 APHHLDIAKVTNR-EFKSGTLED-ALEGADIFIGVSAPG--------VLKAEWISKMAARPVIFAMANPIPEIYP--DEA  300 (398)
T ss_dssp             CC---CHHHHHSC-TTCCCSCSH-HHHTTCSEEECCSTT--------CCCHHHHHTSCSSCEEEECCSSSCSSCH--HHH
T ss_pred             hHHHHHHhhccCc-ccchhhHHH-HhccCCEEEecCCCC--------CCCHHHHHhhCCCCEEEECCCCCccCCH--HHH
Confidence            1    22332211 111123433 345689999876433        2555543   57899999974 244454  455


Q ss_pred             HHCCC-eeecc
Q 010101          476 AEVGA-TVVSG  485 (518)
Q Consensus       476 ~~~G~-~~i~G  485 (518)
                      .+.|. .+..|
T Consensus       301 ~~~g~~i~atG  311 (398)
T 2a9f_A          301 LEAGAYIVGTG  311 (398)
T ss_dssp             HTTTCSEEEES
T ss_pred             HHhCCeEEEeC
Confidence            55554 44555

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.16  E-value=0.00058  Score=65.97  Aligned_cols=74  Identities=26%  Similarity=0.276  Sum_probs=54.6

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCccE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGMI  430 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~di  430 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.+++++++++++...    .++.+   +...      .....|+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            56899999988 789999999999999999999999999998887764321    12211   1110      1125799


Q ss_pred             EEEcCCCC
Q 010101          431 LANASAIG  438 (518)
Q Consensus       431 vInatp~g  438 (518)
                      +||+....
T Consensus        83 lv~nAg~~   90 (254)
T 1hdc_A           83 LVNNAGIS   90 (254)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99987543

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=97.16  E-value=0.00048  Score=70.31  Aligned_cols=69  Identities=16%  Similarity=0.361  Sum_probs=50.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhcC---cc-c-c---
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY-------------------ERAKALADAVSG---EA-L-H---  416 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~-------------------~ka~~la~~~~~---~~-~-~---  416 (518)
                      +++++|+|+|+||.|..++.+|+..|+ +|+|++++.                   .|++.+++.+..   .. + .   
T Consensus       116 L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  195 (353)
T 3h5n_A          116 LKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIAL  195 (353)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeec
Confidence            446899999999999999999999999 999999863                   467777665531   11 0 1   


Q ss_pred             -cc--c-ccccCCCCccEEEEcC
Q 010101          417 -FE--Y-LHEFFPEKGMILANAS  435 (518)
Q Consensus       417 -~~--~-l~~~~~~~~divInat  435 (518)
                       +.  . +.+  ..++|+||+||
T Consensus       196 ~i~~~~~~~~--~~~~DlVvd~~  216 (353)
T 3h5n_A          196 NINDYTDLHK--VPEADIWVVSA  216 (353)
T ss_dssp             CCCSGGGGGG--SCCCSEEEECC
T ss_pred             ccCchhhhhH--hccCCEEEEec
Confidence             11  1 222  46789999987

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.15  E-value=0.00065  Score=66.97  Aligned_cols=76  Identities=28%  Similarity=0.388  Sum_probs=57.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc--CCCCccEEE
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF--FPEKGMILA  432 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~--~~~~~divI  432 (518)
                      .++++|+++|.|+ ||.|++++..|++.|++|++++|+.+++++++++++...    .++.+   +...  .....|++|
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv   91 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLI   91 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEE
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            3578999999987 789999999999999999999999999999888775322    12211   1110  224679999


Q ss_pred             EcCCCC
Q 010101          433 NASAIG  438 (518)
Q Consensus       433 natp~g  438 (518)
                      |+....
T Consensus        92 ~nAg~~   97 (291)
T 3rd5_A           92 NNAGIM   97 (291)
T ss_dssp             ECCCCC
T ss_pred             ECCcCC
Confidence            987653

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.14  E-value=0.00017  Score=73.29  Aligned_cols=66  Identities=27%  Similarity=0.264  Sum_probs=47.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.      .+..  ...++.+ .+.++|+|+.++|.
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~------~~~~--~~~sl~e-ll~~aDvVil~vP~  232 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG------VDWI--AHQSPVD-LARDSDVLAVCVAA  232 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT------SCCE--ECSSHHH-HHHTCSEEEECC--
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc------cCce--ecCCHHH-HHhcCCEEEEeCCC
Confidence            46789999999999999999999999999999999987642      1111  1122222 23457788877775

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.14  E-value=0.0011  Score=58.91  Aligned_cols=135  Identities=15%  Similarity=0.165  Sum_probs=79.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHhc--Cccc-----ccccccccCCCCccEEEEcCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN-YERAKALADAVS--GEAL-----HFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt-~~ka~~la~~~~--~~~~-----~~~~l~~~~~~~~divInatp~g  438 (518)
                      +++++|+|+|..|+.++..|.+.|++|++++|+ .++++.+.+.+.  ...+     +.+.+....+.++|.||.+|+-.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            467999999999999999999999999999997 577777776542  2211     11223222367899999998632


Q ss_pred             CCCCCCCCCCCh--hhhcC-CCEEEEEeeCCCchHHHHHHHHCCCe-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 010101          439 MEPNSDQSPVPK--EALKA-YELVFDAVYTPRNTRLLREAAEVGAT-VVSGVEMFIRQALGQFRLFTGGLAPEDFMRK  512 (518)
Q Consensus       439 ~~~~~~~~~~~~--~~l~~-~~~v~Di~Y~P~~T~ll~~A~~~G~~-~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~  512 (518)
                      ..   + ..+..  ..+.+ ..++. .+.+|.....   .++.|+. +++-..... +.+.  +.-.+.....+.+..
T Consensus        83 ~~---n-~~~~~~a~~~~~~~~ii~-~~~~~~~~~~---l~~~G~~~vi~p~~~~~-~~l~--~~~~~~~~~~~~~~~  149 (153)
T 1id1_A           83 AD---N-AFVVLSAKDMSSDVKTVL-AVSDSKNLNK---IKMVHPDIILSPQLFGS-EILA--RVLNGEEINNDMLVS  149 (153)
T ss_dssp             HH---H-HHHHHHHHHHTSSSCEEE-ECSSGGGHHH---HHTTCCSEEECHHHHHH-HHHH--HHHTTCCCCHHHHHH
T ss_pred             HH---H-HHHHHHHHHHCCCCEEEE-EECCHHHHHH---HHHcCCCEEEcHHHHHH-HHHH--HHHhCCCCcHHHHHH
Confidence            00   0 00000  11223 34444 4556655433   4668885 555433333 3222  223455666666554

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.14  E-value=0.00038  Score=71.38  Aligned_cols=72  Identities=15%  Similarity=0.238  Sum_probs=53.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGAR-VIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~-v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ..+.|+++.|||.|.+|++++..|...|++ |++++|+..+.+ .+..++....  .++.+ .+.++|+|+.++|..
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~-~~~~~g~~~~--~~l~e-ll~~aDvV~l~~P~t  232 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKD-AEEKVGARRV--ENIEE-LVAQADIVTVNAPLH  232 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHH-HHHHTTEEEC--SSHHH-HHHTCSEEEECCCCS
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchh-HHHhcCcEec--CCHHH-HHhcCCEEEECCCCC
Confidence            467899999999999999999999999996 999999875543 2344443321  22322 234689999999874

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.13  E-value=0.00071  Score=64.97  Aligned_cols=74  Identities=19%  Similarity=0.181  Sum_probs=54.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--cccc---cccc------CCCCccEEE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFEY---LHEF------FPEKGMILA  432 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~~---l~~~------~~~~~divI  432 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.+++++++++++...+  ++.+   +...      .....|++|
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   82 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46789999987 7899999999999999999999999999888876642211  2211   1110      113479999


Q ss_pred             EcCCCC
Q 010101          433 NASAIG  438 (518)
Q Consensus       433 natp~g  438 (518)
                      |+....
T Consensus        83 n~Ag~~   88 (245)
T 1uls_A           83 HYAGIT   88 (245)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            987543

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.12  E-value=0.00071  Score=65.99  Aligned_cols=76  Identities=24%  Similarity=0.337  Sum_probs=57.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKG  428 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~  428 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+.+++++++++++....    ++.+   +...      .....
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            4578999999987 6899999999999999999999999999999888764321    1111   1110      11357


Q ss_pred             cEEEEcCCCC
Q 010101          429 MILANASAIG  438 (518)
Q Consensus       429 divInatp~g  438 (518)
                      |++||+....
T Consensus       103 D~lvnnAg~~  112 (266)
T 3grp_A          103 DILVNNAGIT  112 (266)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999987543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.12  E-value=0.00043  Score=70.16  Aligned_cols=108  Identities=15%  Similarity=0.220  Sum_probs=73.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.  + +.+ ....  +++.+ ...++|+|+.++|..-  .
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-~~~~--~~l~e-ll~~aDvV~l~~p~~~--~  212 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-GYYV--DSLDD-LYKQADVISLHVPDVP--A  212 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-TCBC--SCHHH-HHHHCSEEEECSCCCG--G
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-Ceec--CCHHH-HHhhCCEEEEcCCCcH--H
Confidence            35789999999999999999999999999999999987664  2 232 2222  12322 2346899999998642  1


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCC-CchHHHHHHHHCCC
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTP-RNTRLLREAAEVGA  480 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P-~~T~ll~~A~~~G~  480 (518)
                       ....+...   .++++.+++|+.-.+ ..+.-+.+|-+.|.
T Consensus       213 -t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~  253 (333)
T 1j4a_A          213 -NVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGK  253 (333)
T ss_dssp             -GTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTS
T ss_pred             -HHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCC
Confidence             11224433   457889999998764 34555555555443

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.11  E-value=0.00027  Score=71.74  Aligned_cols=69  Identities=22%  Similarity=0.191  Sum_probs=50.4

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      ++++++.|||+|.+|++++..|.+.|++|++++|+.+++.+.+...+....+.   .+ ...++|+||.|+|.
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~---~e-~~~~aDvVilavp~   82 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADV---KT-AVAAADVVMILTPD   82 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECH---HH-HHHTCSEEEECSCH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccH---HH-HHhcCCEEEEeCCc
Confidence            45688999999999999999999999999999999887666666665432111   11 12345666666664

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.11  E-value=0.00093  Score=65.59  Aligned_cols=75  Identities=21%  Similarity=0.193  Sum_probs=56.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----ccccc---ccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEYL---HEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~l---~~~------~~~~~d  429 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.+++++++++++....    ++.+.   ...      .....|
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  105 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVD  105 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            478899999987 6899999999999999999999999999999888764321    22111   100      123579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus       106 ~lvnnAg~~  114 (277)
T 3gvc_A          106 KLVANAGVV  114 (277)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987654

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.09  E-value=0.00065  Score=65.41  Aligned_cols=75  Identities=28%  Similarity=0.334  Sum_probs=56.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~d  429 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++.++...    .++.+   +...      .....|
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD   85 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVD   85 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999987 689999999999999999999999999999988875421    11111   1110      123579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus        86 ~lv~nAg~~   94 (248)
T 3op4_A           86 ILVNNAGIT   94 (248)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=97.08  E-value=0.00066  Score=68.96  Aligned_cols=104  Identities=17%  Similarity=0.214  Sum_probs=71.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+.++.  . +. +....   ++.+ .+.++|+|+.++|..  +.
T Consensus       144 ~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~-~~-~~~~~---~l~e-ll~~aDvV~l~~Plt--~~  213 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--F-EP-FLTYT---DFDT-VLKEADIVSLHTPLF--PS  213 (343)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--G-TT-TCEEC---CHHH-HHHHCSEEEECCCCC--TT
T ss_pred             cccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--h-hc-ccccc---CHHH-HHhcCCEEEEcCCCC--HH
Confidence            45789999999999999999999999999999999987641  1 10 11122   3333 345689999999974  22


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCCC-chHHHHHHHH
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTPR-NTRLLREAAE  477 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P~-~T~ll~~A~~  477 (518)
                       ....+..+   .++++.+++|+.-.+. .+.-+.+|-+
T Consensus       214 -t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~  251 (343)
T 2yq5_A          214 -TENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQ  251 (343)
T ss_dssp             -TTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred             -HHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence             12235544   3578899999987643 4444444444

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.08  E-value=0.0012  Score=63.86  Aligned_cols=47  Identities=32%  Similarity=0.568  Sum_probs=42.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   51 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSL   51 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            467899999987 78999999999999999999999999888877665

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=97.08  E-value=0.017  Score=59.88  Aligned_cols=129  Identities=21%  Similarity=0.216  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNR----------NYERAKAL  406 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~-i~nR----------t~~ka~~l  406 (518)
                      +.|.+.+++..++.. |        .++++++++|.|.|.+|+.++..|.++|++|. |.++          +.+...++
T Consensus       198 g~Gv~~~~~~~~~~~-g--------~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~  268 (419)
T 3aoe_E          198 GLGALLVLEALAKRR-G--------LDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSA  268 (419)
T ss_dssp             HHHHHHHHHHHHHHH-T--------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-C--------CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHH
Confidence            567777777666543 3        47889999999999999999999999999765 9998          88999888


Q ss_pred             HHHhcCc---ccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChh---hhcCCCEEEEEeeCCCchHHHHHHHHCCC
Q 010101          407 ADAVSGE---ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKE---ALKAYELVFDAVYTPRNTRLLREAAEVGA  480 (518)
Q Consensus       407 a~~~~~~---~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~---~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~  480 (518)
                      .+..+.-   .++-+++-   ...+|+++.|..-+.        +..+   .+ ...+|.+-.-.|-...-.+.-+++|+
T Consensus       269 ~~~~g~v~~~~~~~~e~~---~~~~DVliP~A~~n~--------i~~~~A~~l-~ak~V~EgAN~p~t~~A~~~L~~~Gi  336 (419)
T 3aoe_E          269 YEATGSLPRLDLAPEEVF---GLEAEVLVLAAREGA--------LDGDRARQV-QAQAVVEVANFGLNPEAEAYLLGKGA  336 (419)
T ss_dssp             HHHHSSCSCCCBCTTTGG---GSSCSEEEECSCTTC--------BCHHHHTTC-CCSEEEECSTTCBCHHHHHHHHHHTC
T ss_pred             HHhhCCcceeeccchhhh---ccCceEEEecccccc--------cccchHhhC-CceEEEECCCCcCCHHHHHHHHHCCC
Confidence            8776521   11112221   136899998874321        2222   23 45789999877753222333367899


Q ss_pred             eeeccHH
Q 010101          481 TVVSGVE  487 (518)
Q Consensus       481 ~~i~G~~  487 (518)
                      .++++.-
T Consensus       337 ~~~PD~~  343 (419)
T 3aoe_E          337 LVVPDLL  343 (419)
T ss_dssp             EEECHHH
T ss_pred             EEECHHH
Confidence            8886543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.08  E-value=0.00074  Score=67.11  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=36.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      ++|.|||+|.||.+++..|++.|++|++++|+.+++++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            689999999999999999999999999999999987764

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.08  E-value=0.00098  Score=68.90  Aligned_cols=96  Identities=9%  Similarity=-0.003  Sum_probs=65.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+.++.+ .+..++... .++++    .+.++|+|+.++|..-  
T Consensus       187 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-~~~~~G~~~~~~l~e----ll~~aDvV~l~~Plt~--  259 (393)
T 2nac_A          187 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES-VEKELNLTWHATRED----MYPVCDVVTLNCPLHP--  259 (393)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH-HHHHHTCEECSSHHH----HGGGCSEEEECSCCCT--
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchh-hHhhcCceecCCHHH----HHhcCCEEEEecCCch--
Confidence            357899999999999999999999999999999999865432 344455432 13333    3456899999998642  


Q ss_pred             CCCCCCCChh---hhcCCCEEEEEeeCC
Q 010101          442 NSDQSPVPKE---ALKAYELVFDAVYTP  466 (518)
Q Consensus       442 ~~~~~~~~~~---~l~~~~~v~Di~Y~P  466 (518)
                      .+ ...+..+   .++++.+++|+.-.+
T Consensus       260 ~t-~~li~~~~l~~mk~gailIN~aRG~  286 (393)
T 2nac_A          260 ET-EHMINDETLKLFKRGAYIVNTARGK  286 (393)
T ss_dssp             TT-TTCBSHHHHTTSCTTEEEEECSCGG
T ss_pred             HH-HHHhhHHHHhhCCCCCEEEECCCch
Confidence            11 1224332   346667777776543

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.08  E-value=0.0021  Score=61.15  Aligned_cols=75  Identities=24%  Similarity=0.340  Sum_probs=54.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-ccc--cccc---cccc--CCCCccEEEEc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG-EAL--HFEY---LHEF--FPEKGMILANA  434 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~-~~~--~~~~---l~~~--~~~~~divIna  434 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++.. ..+  ++.+   +...  .....|+|||+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEEC
Confidence            467899999998 7899999999999999999999999998888776532 111  2211   1110  12357999998


Q ss_pred             CCCC
Q 010101          435 SAIG  438 (518)
Q Consensus       435 tp~g  438 (518)
                      ....
T Consensus        84 Ag~~   87 (244)
T 3d3w_A           84 AAVA   87 (244)
T ss_dssp             CCCC
T ss_pred             CccC
Confidence            7643

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.07  E-value=0.00038  Score=70.50  Aligned_cols=101  Identities=21%  Similarity=0.249  Sum_probs=68.2

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.+      +..  ...++.+ .+.++|+|+.++|....  
T Consensus       160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~------g~~--~~~~l~e-ll~~aDvVil~vP~~~~--  228 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT------NYT--YYGSVVE-LASNSDILVVACPLTPE--  228 (333)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC------CSE--EESCHHH-HHHTCSEEEECSCCCGG--
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc------Cce--ecCCHHH-HHhcCCEEEEecCCChH--
Confidence            357899999999999999999999999999999999976532      211  1223333 34568999999987421  


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCCC-chHHHHHH
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTPR-NTRLLREA  475 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P~-~T~ll~~A  475 (518)
                       ....+..+   .++++.+++|+.-.+. .+.-+.+|
T Consensus       229 -t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~a  264 (333)
T 3ba1_A          229 -TTHIINREVIDALGPKGVLINIGRGPHVDEPELVSA  264 (333)
T ss_dssp             -GTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHH
T ss_pred             -HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHH
Confidence             11124332   3577888888876643 33333444

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.06  E-value=0.00085  Score=65.09  Aligned_cols=75  Identities=23%  Similarity=0.252  Sum_probs=54.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~d  429 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++....    .++.+   +...      .....|
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD   83 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLH   83 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            367899999987 689999999999999999999999999988887764321    12111   1110      112579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus        84 ~lv~~Ag~~   92 (260)
T 1nff_A           84 VLVNNAGIL   92 (260)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987653

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.06  E-value=0.00095  Score=64.66  Aligned_cols=72  Identities=17%  Similarity=0.262  Sum_probs=52.5

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc-c--ccccc---cccc------CCCCccEEEE
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE-A--LHFEY---LHEF------FPEKGMILAN  433 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~-~--~~~~~---l~~~------~~~~~divIn  433 (518)
                      +|+|+|.|+ +|.|++++..|++.|++|.+++|+.+++++++++.+.. .  .++.+   +...      .....|++||
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            488999987 58999999999999999999999999999888765421 1  11111   1000      1346799999


Q ss_pred             cCCCC
Q 010101          434 ASAIG  438 (518)
Q Consensus       434 atp~g  438 (518)
                      ....+
T Consensus        82 NAG~~   86 (247)
T 3ged_A           82 NACRG   86 (247)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            87554

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.06  E-value=0.0008  Score=65.27  Aligned_cols=47  Identities=19%  Similarity=0.293  Sum_probs=41.8

Q ss_pred             ccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++||+++|.|++   |.|++++..|++.|++|.+++|+.+..+++++.+
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~   52 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLL   52 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            5789999999974   8999999999999999999999988877776655

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=97.05  E-value=0.00017  Score=72.97  Aligned_cols=114  Identities=20%  Similarity=0.156  Sum_probs=75.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++.  + +..    ..+.++.+ .+.++|+|+.++|..-  .
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~----~~~~~l~e-ll~~aDvV~~~~p~t~--~  211 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDY----CTQVSLDE-VLEKSDIITIHAPYIK--E  211 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTT----CEECCHHH-HHHHCSEEEECCCCCT--T
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhc----cccCCHHH-HHhhCCEEEEecCCch--H
Confidence            35789999999999999999999999999999999987653  1 111    12223333 3356899999998742  1


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCC-CchHHHHHHHHCCCeeeccHH
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTP-RNTRLLREAAEVGATVVSGVE  487 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P-~~T~ll~~A~~~G~~~i~G~~  487 (518)
                       ....+..+   .++++.+++|+.-.+ ..+.-+.+|-+.|...--|++
T Consensus       212 -t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LD  259 (331)
T 1xdw_A          212 -NGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCD  259 (331)
T ss_dssp             -TCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEES
T ss_pred             -HHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEe
Confidence             12234433   357889999998764 345555555554443333333

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.03  E-value=0.00077  Score=65.29  Aligned_cols=75  Identities=17%  Similarity=0.240  Sum_probs=54.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~d  429 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++....    .++.+   +...      .....|
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD   88 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFD   88 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999987 689999999999999999999999999888877664211    12211   1110      012579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      +|||+....
T Consensus        89 ~lv~~Ag~~   97 (263)
T 3ak4_A           89 LLCANAGVS   97 (263)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCcC
Confidence            999987543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.03  E-value=0.0017  Score=69.05  Aligned_cols=91  Identities=21%  Similarity=0.150  Sum_probs=66.1

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .+.|++++|+|+|++|+.++..+...|++|++++|++++++. +...|....++++    .+.++|+||.+|+..  .  
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~-A~~~Ga~~~~l~e----~l~~aDvVi~atgt~--~--  341 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQ-AMMEGFDVVTVEE----AIGDADIVVTATGNK--D--  341 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-HHHTTCEECCHHH----HGGGCSEEEECSSSS--C--
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHcCCEEecHHH----HHhCCCEEEECCCCH--H--
Confidence            467999999999999999999999999999999999998754 4455654434433    235689999987421  1  


Q ss_pred             CCCCCCh---hhhcCCCEEEEEeeCC
Q 010101          444 DQSPVPK---EALKAYELVFDAVYTP  466 (518)
Q Consensus       444 ~~~~~~~---~~l~~~~~v~Di~Y~P  466 (518)
                         .+..   ..++++.+++++...+
T Consensus       342 ---~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          342 ---IIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             ---SBCHHHHHHSCTTCEEEECSSSG
T ss_pred             ---HHHHHHHHhcCCCcEEEEeCCCC
Confidence               1332   2356677777776654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.02  E-value=0.00089  Score=65.55  Aligned_cols=75  Identities=24%  Similarity=0.335  Sum_probs=54.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~d  429 (518)
                      .+.+|+++|.|+ ||.|++++..|++.|++|.+++|+.+++++++++++....    ++.+   +...      .....|
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  104 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVD  104 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            356889999987 6899999999999999999999999999999888764321    2211   1110      123579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus       105 ~lVnnAg~~  113 (272)
T 4dyv_A          105 VLFNNAGTG  113 (272)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.02  E-value=0.003  Score=61.61  Aligned_cols=48  Identities=23%  Similarity=0.279  Sum_probs=42.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   65 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW   65 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3477899999987 68999999999999999999999999888877665

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.01  E-value=0.0027  Score=63.24  Aligned_cols=74  Identities=15%  Similarity=0.116  Sum_probs=54.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----Cc--c---ccccc---ccccCCCCccE
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS----GE--A---LHFEY---LHEFFPEKGMI  430 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~----~~--~---~~~~~---l~~~~~~~~di  430 (518)
                      ..+++++||.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+.+.    ..  .   .++.+   +.. ...+.|+
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~d~   86 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE-VIKGAAG   86 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT-TTTTCSE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH-HHcCCCE
Confidence            356899999998 889999999999999999999999988877765431    11  1   12222   222 3446899


Q ss_pred             EEEcCCCC
Q 010101          431 LANASAIG  438 (518)
Q Consensus       431 vInatp~g  438 (518)
                      |||+....
T Consensus        87 vih~A~~~   94 (342)
T 1y1p_A           87 VAHIASVV   94 (342)
T ss_dssp             EEECCCCC
T ss_pred             EEEeCCCC
Confidence            99987643

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=97.01  E-value=6.2e-05  Score=75.75  Aligned_cols=70  Identities=17%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+.++.+.+.     ......++.+ .+.++|+|+.++|..
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-----~~~~~~~l~e-ll~~aDiV~l~~Plt  204 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVE-----SYVGREELRA-FLNQTRVLINLLPNT  204 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCE-----EEESHHHHHH-HHHTCSEEEECCCCC
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhh-----hhcccCCHHH-HHhhCCEEEEecCCc
Confidence            357799999999999999999999999999999999876432110     0001122333 334678888888754

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.00  E-value=0.0012  Score=66.12  Aligned_cols=109  Identities=14%  Similarity=0.074  Sum_probs=71.7

Q ss_pred             cEEEEEccchhHH-HHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCcc--cccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGR-ALAFGAKSR-GARVIIFNRNYERAKALADAVSGEA--LHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       368 k~vlvlGaGg~ar-aia~~L~~~-G~~v~i~nRt~~ka~~la~~~~~~~--~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .++.|||+|.+|+ +.+.+|.+. +++|++++|+.++++++++.++...  .+..+  . ...+.|+|+.|||.....  
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~--~-l~~~~D~V~i~tp~~~h~--   77 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRD--V-LQYGVDAVMIHAATDVHS--   77 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTG--G-GGGCCSEEEECSCGGGHH--
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHH--H-hhcCCCEEEEECCchhHH--
Confidence            3789999999998 588888775 5677799999999999999987542  22222  1 114689999999864321  


Q ss_pred             CCCCCChhhhcCCC-EEEEEeeCCC------chHHHHHHHHCCCeeeccHH
Q 010101          444 DQSPVPKEALKAYE-LVFDAVYTPR------NTRLLREAAEVGATVVSGVE  487 (518)
Q Consensus       444 ~~~~~~~~~l~~~~-~v~Di~Y~P~------~T~ll~~A~~~G~~~i~G~~  487 (518)
                         ++....+..+. ++++   +|.      -..+.+.|++.|..+.-|..
T Consensus        78 ---~~~~~al~~Gk~V~~E---KP~~~~~~~~~~l~~~a~~~g~~~~v~~~  122 (323)
T 1xea_A           78 ---TLAAFFLHLGIPTFVD---KPLAASAQECENLYELAEKHHQPLYVGFN  122 (323)
T ss_dssp             ---HHHHHHHHTTCCEEEE---SCSCSSHHHHHHHHHHHHHTTCCEEEECG
T ss_pred             ---HHHHHHHHCCCeEEEe---CCCcCCHHHHHHHHHHHHhcCCeEEEeec
Confidence               11223344443 4444   343      13466677788877666543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.00  E-value=0.00026  Score=70.91  Aligned_cols=109  Identities=13%  Similarity=0.070  Sum_probs=69.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC--HHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN--YERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt--~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      ..++.|||+|-+|.+++..|.+.|+ +|+++||+  .++.+.+. ..+...  ..++.+ ...++|+||-++|...... 
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~-~~g~~~--~~~~~e-~~~~aDvVi~~vp~~~~~~-   98 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE-ELGVSC--KASVAE-VAGECDVIFSLVTAQAALE-   98 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH-HTTCEE--CSCHHH-HHHHCSEEEECSCTTTHHH-
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH-HCCCEE--eCCHHH-HHhcCCEEEEecCchhHHH-
Confidence            4689999999999999999999999 99999997  45555544 334322  112222 2345899999998653211 


Q ss_pred             CCCCCC--hhhhcCCCEEEEEeeCCCch-H-HHHHHHHC--CCeee
Q 010101          444 DQSPVP--KEALKAYELVFDAVYTPRNT-R-LLREAAEV--GATVV  483 (518)
Q Consensus       444 ~~~~~~--~~~l~~~~~v~Di~Y~P~~T-~-ll~~A~~~--G~~~i  483 (518)
                         .+.  ...++++.+++|....+..| . +.+...++  |..++
T Consensus        99 ---~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~v  141 (312)
T 3qsg_A           99 ---VAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYA  141 (312)
T ss_dssp             ---HHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred             ---HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEE
Confidence               011  12345778999998765433 2 22334445  65543

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.98  E-value=0.0036  Score=63.00  Aligned_cols=95  Identities=17%  Similarity=0.108  Sum_probs=59.7

Q ss_pred             CcEEEEEccchhHHH-HHHHHHHCCCeEEEEeCCHH--HHHHHHHHhcCcccccccccccCC-CCccEEEEcCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRA-LAFGAKSRGARVIIFNRNYE--RAKALADAVSGEALHFEYLHEFFP-EKGMILANASAIGMEPN  442 (518)
Q Consensus       367 ~k~vlvlGaGg~ara-ia~~L~~~G~~v~i~nRt~~--ka~~la~~~~~~~~~~~~l~~~~~-~~~divInatp~g~~~~  442 (518)
                      .+++.|+|.||+|.+ +|..|.++|++|++++++..  ..++|.+ .+.....-.+... .. .++|+||-+  +|    
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~-~gi~v~~g~~~~~-l~~~~~d~vV~S--pg----   75 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEA-LGIDVYEGFDAAQ-LDEFKADVYVIG--NV----   75 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHH-TTCEEEESCCGGG-GGSCCCSEEEEC--TT----
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHh-CCCEEECCCCHHH-cCCCCCCEEEEC--CC----
Confidence            478999999999996 78888999999999998643  3333432 1221100000000 00 123444321  11    


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHH
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIR  491 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~  491 (518)
                                            -|...|.+++|+++|++++.-.++|..
T Consensus        76 ----------------------i~~~~p~~~~a~~~gi~v~~~~e~~~~  102 (326)
T 3eag_A           76 ----------------------AKRGMDVVEAILNLGLPYISGPQWLSE  102 (326)
T ss_dssp             ----------------------CCTTCHHHHHHHHTTCCEEEHHHHHHH
T ss_pred             ----------------------cCCCCHHHHHHHHcCCcEEeHHHHHHH
Confidence                                  134578889999999999999887765

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.98  E-value=0.0021  Score=62.14  Aligned_cols=76  Identities=26%  Similarity=0.347  Sum_probs=51.4

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCccc----cccc---ccc-cCCCCccEEE
Q 010101          363 SPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYE-RAKALADAVSGEAL----HFEY---LHE-FFPEKGMILA  432 (518)
Q Consensus       363 ~~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~-ka~~la~~~~~~~~----~~~~---l~~-~~~~~~divI  432 (518)
                      .+|+||.++|.|++ |.|++++..|++.|++|.+++|+.+ ++.+..+..+.+..    ++.+   ... +.....|++|
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            57899999999884 8999999999999999999999852 33333344443321    2211   111 0123579999


Q ss_pred             EcCCCC
Q 010101          433 NASAIG  438 (518)
Q Consensus       433 natp~g  438 (518)
                      |.....
T Consensus        85 NNAGi~   90 (247)
T 4hp8_A           85 NNAGII   90 (247)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            987543

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.98  E-value=0.00071  Score=66.07  Aligned_cols=76  Identities=21%  Similarity=0.259  Sum_probs=56.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKG  428 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~  428 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+.+++++++++++....    ++.+   +...      .....
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRL   86 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            3578999999988 6899999999999999999999999999998888764321    2211   1110      11357


Q ss_pred             cEEEEcCCCC
Q 010101          429 MILANASAIG  438 (518)
Q Consensus       429 divInatp~g  438 (518)
                      |++||+....
T Consensus        87 d~lv~nAg~~   96 (271)
T 3tzq_B           87 DIVDNNAAHS   96 (271)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999987653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.97  E-value=0.00082  Score=65.60  Aligned_cols=46  Identities=33%  Similarity=0.472  Sum_probs=41.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   50 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56889999987 78999999999999999999999999998888776

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.96  E-value=0.0034  Score=59.63  Aligned_cols=75  Identities=21%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-Cccc--cccc---cccc--CCCCccEEEEc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS-GEAL--HFEY---LHEF--FPEKGMILANA  434 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~-~~~~--~~~~---l~~~--~~~~~divIna  434 (518)
                      ++++++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.++.. ...+  ++.+   +...  .....|+|||+
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN   83 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEEC
Confidence            467899999988 789999999999999999999999999888876542 1111  2111   1110  12357999998


Q ss_pred             CCCC
Q 010101          435 SAIG  438 (518)
Q Consensus       435 tp~g  438 (518)
                      ....
T Consensus        84 Ag~~   87 (244)
T 1cyd_A           84 AALV   87 (244)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            7643

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=96.95  E-value=0.0017  Score=66.88  Aligned_cols=67  Identities=18%  Similarity=0.310  Sum_probs=50.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.     ..+....++++    .+.++|+|+.++|..
T Consensus       112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~~g~~~~~l~e----ll~~aDvV~l~~Plt  178 (380)
T 2o4c_A          112 ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR-----EPDGEFVSLER----LLAEADVISLHTPLN  178 (380)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH-----STTSCCCCHHH----HHHHCSEEEECCCCC
T ss_pred             cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh-----ccCcccCCHHH----HHHhCCEEEEeccCc
Confidence            46889999999999999999999999999999999876532     12222223332    234689999998874

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.94  E-value=0.00057  Score=67.64  Aligned_cols=110  Identities=18%  Similarity=0.193  Sum_probs=71.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSP  447 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~  447 (518)
                      .++.|||+|.+|++++..|.+.|++|++++|++++++.+.+. +...  ..++.+ ...++|+||.++|....  ... .
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~-~~~~~D~vi~~vp~~~~--~~~-v   77 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQ-GAQA--CENNQK-VAAASDIIFTSLPNAGI--VET-V   77 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTT-TCEE--CSSHHH-HHHHCSEEEECCSSHHH--HHH-H
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC-CCee--cCCHHH-HHhCCCEEEEECCCHHH--HHH-H
Confidence            589999999999999999999999999999999999887654 3221  122222 23457999999974321  000 0


Q ss_pred             C----C-hhhhcCCCEEEEEeeCCC-c-hHHHHHHHHCCCeeec
Q 010101          448 V----P-KEALKAYELVFDAVYTPR-N-TRLLREAAEVGATVVS  484 (518)
Q Consensus       448 ~----~-~~~l~~~~~v~Di~Y~P~-~-T~ll~~A~~~G~~~i~  484 (518)
                      +    . ...++++.+++|+..... . ..+.+...+.|+.+++
T Consensus        78 ~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~  121 (301)
T 3cky_A           78 MNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD  121 (301)
T ss_dssp             HHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            1    0 123567788999875532 2 2344445566766553

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.94  E-value=0.00094  Score=63.96  Aligned_cols=48  Identities=27%  Similarity=0.493  Sum_probs=42.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   55 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI   55 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            3567899999987 78999999999999999999999999888877665

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.94  E-value=0.00091  Score=67.99  Aligned_cols=113  Identities=13%  Similarity=0.140  Sum_probs=77.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-GAR-VIIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-G~~-v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      .++.|||+|.+|+..+.+|.+. |++ +.+++|+.++++++++.++... -+++++-+  ..+.|+|+.|||.....   
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~D~V~i~tp~~~h~---   80 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLA--REDVEMVIITVPNDKHA---   80 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHH--CSSCCEEEECSCTTSHH---
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhc--CCCCCEEEEeCChHHHH---
Confidence            5899999999999999999887 666 5699999999999999987543 23333321  24689999999875432   


Q ss_pred             CCCCChhhhcCCCEEEEEeeCCC------chHHHHHHHHCCCeeeccHHHH
Q 010101          445 QSPVPKEALKAYELVFDAVYTPR------NTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       445 ~~~~~~~~l~~~~~v~Di~Y~P~------~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                        .+....+..+.-|+  +-+|.      --.+.+.|++.|..+.-|...-
T Consensus        81 --~~~~~al~~gk~vl--~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R  127 (354)
T 3db2_A           81 --EVIEQCARSGKHIY--VEKPISVSLDHAQRIDQVIKETGVKFLCGHSSR  127 (354)
T ss_dssp             --HHHHHHHHTTCEEE--EESSSCSSHHHHHHHHHHHHHHCCCEEEECGGG
T ss_pred             --HHHHHHHHcCCEEE--EccCCCCCHHHHHHHHHHHHHcCCeEEEeechh
Confidence              12223455544333  22453      2356677888888877666544

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.94  E-value=0.0021  Score=64.79  Aligned_cols=69  Identities=25%  Similarity=0.285  Sum_probs=51.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-------cc-cccccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-------LH-FEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-------~~-~~~l~~~~~~~~divInatp~  437 (518)
                      ..++.|||+|.+|.+++..|.+.|.+|++++|+.++++.+.+.-....       +. ..+..+  ...+|+||-++|.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--~~~aDvVil~vk~   90 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE--IKKEDILVIAIPV   90 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG--CCTTEEEEECSCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH--hcCCCEEEEECCH
Confidence            358999999999999999999999999999999999999877521000       11 112221  3467888888763

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.93  E-value=0.00085  Score=67.53  Aligned_cols=113  Identities=18%  Similarity=0.186  Sum_probs=76.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-GARV-IIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-G~~v-~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      .++.|||+|.+|+..+.+|.+. +++| .+++|+.++++++++.++....+++++-.  ..+.|+|+.|||.....    
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~D~V~i~tp~~~h~----   77 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEA--AADIDAVVICTPTDTHA----   77 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHH--CTTCCEEEECSCGGGHH----
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhc--CCCCCEEEEeCCchhHH----
Confidence            4799999999999999999886 5665 49999999999999998755223333321  23689999999865432    


Q ss_pred             CCCChhhhcCCCEEEEEeeCCC------chHHHHHHHHCCCeeeccHHHH
Q 010101          446 SPVPKEALKAYELVFDAVYTPR------NTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~Y~P~------~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                       ++....+..+.-|+  +=+|.      -..+.+.|++.|..+.-|..+-
T Consensus        78 -~~~~~al~~gk~v~--~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r  124 (331)
T 4hkt_A           78 -DLIERFARAGKAIF--CEKPIDLDAERVRACLKVVSDTKAKLMVGFNRR  124 (331)
T ss_dssp             -HHHHHHHHTTCEEE--ECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGG
T ss_pred             -HHHHHHHHcCCcEE--EecCCCCCHHHHHHHHHHHHHcCCeEEEccccc
Confidence             12223454443332  22342      2456778888898877665544

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.92  E-value=0.0007  Score=63.13  Aligned_cols=68  Identities=24%  Similarity=0.204  Sum_probs=49.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--ccccccccCCCCccEEEEcCCCC
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~~l~~~~~~~~divInatp~g  438 (518)
                      +++|+|+ |+.|++++..|.+.|++|+++.|+.++.+.+..  +...+  ++.+.......+.|+||++.+..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHK--DINILQKDIFDLTLSDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCS--SSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccC--CCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence            6999996 889999999999999999999999988776641  22211  22221111245689999988653

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.92  E-value=0.00091  Score=64.52  Aligned_cols=75  Identities=17%  Similarity=0.228  Sum_probs=55.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~d  429 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.++++++++...    .++.+   +...      .....|
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   88 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVD   88 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCC
Confidence            467899999987 689999999999999999999999998888887775321    12111   1110      112579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      +|||+....
T Consensus        89 ~li~~Ag~~   97 (265)
T 2o23_A           89 VAVNCAGIA   97 (265)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCccC
Confidence            999987654

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.92  E-value=0.0016  Score=64.15  Aligned_cols=69  Identities=19%  Similarity=0.202  Sum_probs=51.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRG--ARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G--~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      +++.|||+|.+|.+++..|.+.|  .+|++++|+.++++.+.+ .+.......++.+ ...++|+||-|+|..
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~-~~~~aDvVilavp~~   77 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE-RGIVDEATADFKV-FAALADVIILAVPIK   77 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-TTSCSEEESCTTT-TGGGCSEEEECSCHH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH-cCCcccccCCHHH-hhcCCCEEEEcCCHH
Confidence            58999999999999999999874  599999999999887654 3321111223333 345689999999864

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.91  E-value=0.00062  Score=65.81  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=46.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~d  429 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.+++++++++++...    .++.+   +...      .....|
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   83 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVH   83 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999988 689999999999999999999999999888887765322    11211   1110      113579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus        84 ~lv~nAg~~   92 (257)
T 3tpc_A           84 GLVNCAGTA   92 (257)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987543

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.91  E-value=0.0017  Score=61.48  Aligned_cols=71  Identities=17%  Similarity=0.279  Sum_probs=51.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cc---ccCCCCccEEEEcCC
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LH---EFFPEKGMILANASA  436 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~---~~~~~~~divInatp  436 (518)
                      |+++|.|+ ||.|++++..|++.|++|++++|+.++++++.++++...    .++.+   +.   +......|++||+..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag   81 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAG   81 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCC
Confidence            46899987 689999999999999999999999999999988875322    11111   11   101233499999886


Q ss_pred             CC
Q 010101          437 IG  438 (518)
Q Consensus       437 ~g  438 (518)
                      .+
T Consensus        82 ~~   83 (230)
T 3guy_A           82 SG   83 (230)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.91  E-value=0.0025  Score=62.08  Aligned_cols=47  Identities=21%  Similarity=0.317  Sum_probs=40.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-NYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-t~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++| +.++++++++++
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   56 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAEL   56 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHH
Confidence            356899999987 68999999999999999999999 999888887765

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.90  E-value=0.0016  Score=62.30  Aligned_cols=48  Identities=29%  Similarity=0.448  Sum_probs=42.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG   51 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh
Confidence            357899999987 789999999999999999999999999888877664

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.88  E-value=0.00076  Score=66.64  Aligned_cols=111  Identities=13%  Similarity=0.138  Sum_probs=70.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCC-CCCC-C
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGME-PNSD-Q  445 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~-~~~~-~  445 (518)
                      .++.|||+|.+|++++..|.+.|++|++++|+.++++.+.+. +...  ..++.+ ...++|+||.|+|.... ...- .
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~-~~~~~D~vi~~v~~~~~~~~~~~~   81 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA-GAET--ASTAKA-IAEQCDVIITMLPNSPHVKEVALG   81 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TCEE--CSSHHH-HHHHCSEEEECCSSHHHHHHHHHS
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC-CCee--cCCHHH-HHhCCCEEEEECCCHHHHHHHHhC
Confidence            479999999999999999999999999999999999888764 3221  112222 23458999999984311 0000 0


Q ss_pred             -CCCChhhhcCCCEEEEEeeCCCc-h-HHHHHHHHCCCeee
Q 010101          446 -SPVPKEALKAYELVFDAVYTPRN-T-RLLREAAEVGATVV  483 (518)
Q Consensus       446 -~~~~~~~l~~~~~v~Di~Y~P~~-T-~ll~~A~~~G~~~i  483 (518)
                       ..+ ...+.++.+++|+.-.+.. + .+.+...+.|..++
T Consensus        82 ~~~l-~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~  121 (299)
T 1vpd_A           82 ENGI-IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEML  121 (299)
T ss_dssp             TTCH-HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             cchH-hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence             001 1235677888888655432 2 33344455676554

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.87  E-value=0.0008  Score=64.50  Aligned_cols=72  Identities=15%  Similarity=0.025  Sum_probs=51.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-e--CCHHHHHHHHHHh-cCccccccccccc------CCCCccEEEEcC
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIF-N--RNYERAKALADAV-SGEALHFEYLHEF------FPEKGMILANAS  435 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~-n--Rt~~ka~~la~~~-~~~~~~~~~l~~~------~~~~~divInat  435 (518)
                      +|+++|.|+ ||.|++++..|++.|++|+++ +  |+.++++++++++ +.+..+.+++...      .....|++||+.
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lv~~A   80 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQKPERLVDATLQHGEAIDTIVSND   80 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTEEECCCCCGGGHHHHHGGGSSCEEEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            478999987 689999999999999999999 7  9999999888776 2211111111110      224679999988


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      ...
T Consensus        81 g~~   83 (244)
T 1zmo_A           81 YIP   83 (244)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            654

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.87  E-value=0.0026  Score=68.50  Aligned_cols=96  Identities=20%  Similarity=0.191  Sum_probs=67.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.++++.|||.|.+|++++..|...|++|++++|+.++.  .+...+....++++    ...++|+|+.++|..-  .
T Consensus       138 ~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g~~~~~l~e----~~~~aDvV~l~~P~~~--~  209 (529)
T 1ygy_A          138 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA--RAAQLGIELLSLDD----LLARADFISVHLPKTP--E  209 (529)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH--HHHHHTCEECCHHH----HHHHCSEEEECCCCST--T
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChh--HHHhcCcEEcCHHH----HHhcCCEEEECCCCch--H
Confidence            35789999999999999999999999999999999986432  24455544333333    2346899999999751  1


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCCC
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTPR  467 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P~  467 (518)
                       ....+..+   .++++.+++|+.-.+.
T Consensus       210 -t~~~i~~~~~~~~k~g~ilin~arg~i  236 (529)
T 1ygy_A          210 -TAGLIDKEALAKTKPGVIIVNAARGGL  236 (529)
T ss_dssp             -TTTCBCHHHHTTSCTTEEEEECSCTTS
T ss_pred             -HHHHhCHHHHhCCCCCCEEEECCCCch
Confidence             11224432   3567788889875543

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.86  E-value=0.0018  Score=64.58  Aligned_cols=70  Identities=14%  Similarity=0.152  Sum_probs=53.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhcC------cccc--cccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRG--ARVIIFNRNYERAKALADAVSG------EALH--FEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G--~~v~i~nRt~~ka~~la~~~~~------~~~~--~~~l~~~~~~~~divInatp~  437 (518)
                      .++.|||+|.+|.+++..|+..|  .+|++++|+.++++.++..++.      ....  ..+. + ...++|+||.|++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~-~~~~aDvViiav~~   79 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-A-ALADADVVISTLGN   79 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-G-GGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-H-HhCCCCEEEEecCC
Confidence            37999999999999999999888  4899999999999988865531      0111  1233 2 35679999999986


Q ss_pred             CC
Q 010101          438 GM  439 (518)
Q Consensus       438 g~  439 (518)
                      ..
T Consensus        80 ~~   81 (309)
T 1hyh_A           80 IK   81 (309)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.84  E-value=0.0025  Score=61.38  Aligned_cols=48  Identities=31%  Similarity=0.537  Sum_probs=43.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   56 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI   56 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4578999999988 68999999999999999999999999988887765

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.84  E-value=0.00053  Score=69.45  Aligned_cols=116  Identities=12%  Similarity=0.157  Sum_probs=78.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++.   ++.. .   .+.++.+ .+.++|+|+.++|..-  .
T Consensus       141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~---~~~~-~---~~~~l~e-ll~~aDvV~~~~P~~~--~  210 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG---DHPD-F---DYVSLED-LFKQSDVIDLHVPGIE--Q  210 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS---CCTT-C---EECCHHH-HHHHCSEEEECCCCCG--G
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh---hHhc-c---ccCCHHH-HHhcCCEEEEcCCCch--h
Confidence            45789999999999999999999999999999999987643   1111 1   1223323 3356899999998742  1


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCC-CchHHHHHHHHCCCeeeccHHHH
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTP-RNTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P-~~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                       ....+..+   .++++.+++|+.-.+ ..+.-+.+|-+.|...--|++.+
T Consensus       211 -t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~  260 (333)
T 1dxy_A          211 -NTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY  260 (333)
T ss_dssp             -GTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSC
T ss_pred             -HHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecC
Confidence             11234433   467889999998874 35666666666665444444444

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.83  E-value=0.0019  Score=62.77  Aligned_cols=49  Identities=20%  Similarity=0.384  Sum_probs=43.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.++++
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   61 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG   61 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhC
Confidence            3567899999987 689999999999999999999999998888877764

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.83  E-value=0.0014  Score=69.55  Aligned_cols=112  Identities=22%  Similarity=0.229  Sum_probs=71.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---Ccc-cccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS---GEA-LHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~---~~~-~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .++.|||+|.+|++++..|.+.|++|+++||+.++++++.+..+   ... .+.+++.. .++.+|+||-++|.+..  .
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~-~l~~aDvVilavp~~~~--v   82 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVG-SLEKPRRIMLMVQAGAA--T   82 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHH-TBCSSCEEEECCCTTHH--H
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHh-hccCCCEEEEEccCchH--H
Confidence            57999999999999999999999999999999999999988652   111 12222211 12348999999986521  0


Q ss_pred             CCCCCC--hhhhcCCCEEEEEeeCC-CchH-HHHHHHHCCCeee
Q 010101          444 DQSPVP--KEALKAYELVFDAVYTP-RNTR-LLREAAEVGATVV  483 (518)
Q Consensus       444 ~~~~~~--~~~l~~~~~v~Di~Y~P-~~T~-ll~~A~~~G~~~i  483 (518)
                      +. .+.  ...++++.+++|+.-.. ..|. +.+..++.|+.++
T Consensus        83 ~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v  125 (474)
T 2iz1_A           83 DA-TIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFI  125 (474)
T ss_dssp             HH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEE
T ss_pred             HH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEE
Confidence            00 010  11345677888876442 2332 3333344565543

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.83  E-value=0.0017  Score=62.02  Aligned_cols=44  Identities=27%  Similarity=0.388  Sum_probs=39.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTH   46 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            578999987 78999999999999999999999999988887766

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.81  E-value=0.0014  Score=63.60  Aligned_cols=76  Identities=18%  Similarity=0.184  Sum_probs=51.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--cccc---cccc------CCCCccE
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFEY---LHEF------FPEKGMI  430 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~~---l~~~------~~~~~di  430 (518)
                      .++++|+++|.|+ ||.|++++..|++.|++|++++|+.+++.+..+..+...+  ++.+   +...      .....|+
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSE
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            4567899999987 7899999999999999999999998876555555443221  1111   1100      1245799


Q ss_pred             EEEcCCCC
Q 010101          431 LANASAIG  438 (518)
Q Consensus       431 vInatp~g  438 (518)
                      +||+....
T Consensus       103 lv~nAg~~  110 (260)
T 3gem_A          103 VVHNASEW  110 (260)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99987643

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.81  E-value=0.0012  Score=61.98  Aligned_cols=69  Identities=12%  Similarity=0.169  Sum_probs=49.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHH-HCCCeEEEEeCCHH-HHHHHHHHhc-Cccc--ccc---cccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGA-GGAGRALAFGAK-SRGARVIIFNRNYE-RAKALADAVS-GEAL--HFE---YLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~-~~G~~v~i~nRt~~-ka~~la~~~~-~~~~--~~~---~l~~~~~~~~divInatp~  437 (518)
                      |+++|+|+ |+.|++++..|. +.|++|+++.|+.+ +++++++... ...+  ++.   ++.. ...+.|+|||+...
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~d~vv~~ag~   83 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQ-AVTNAEVVFVGAME   83 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHH-HHTTCSEEEESCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHH-HHcCCCEEEEcCCC
Confidence            67999996 889999999999 89999999999999 8777752211 1111  221   2222 23568999998753

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=96.81  E-value=0.0013  Score=70.03  Aligned_cols=110  Identities=21%  Similarity=0.324  Sum_probs=70.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----c-cccccccccc--CCCCccEEEEcCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG----E-ALHFEYLHEF--FPEKGMILANASAIGMEP  441 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~----~-~~~~~~l~~~--~~~~~divInatp~g~~~  441 (518)
                      ++.|||+|.+|.+++..|++.|++|+++||+.++++++.+..+.    . .....++.+.  .++++|+||-++|.+.. 
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~-   81 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA-   81 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH-
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH-
Confidence            58999999999999999999999999999999999999886541    1 1111122220  12358999999986511 


Q ss_pred             CCCCCCCC--hhhhcCCCEEEEEeeCC-Cch-HHHHHHHHCCCe
Q 010101          442 NSDQSPVP--KEALKAYELVFDAVYTP-RNT-RLLREAAEVGAT  481 (518)
Q Consensus       442 ~~~~~~~~--~~~l~~~~~v~Di~Y~P-~~T-~ll~~A~~~G~~  481 (518)
                       .+. .+.  ...+.++.+++|+.-.. ..| .+.+..++.|..
T Consensus        82 -v~~-vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~  123 (478)
T 1pgj_A           82 -TDS-TIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR  123 (478)
T ss_dssp             -HHH-HHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred             -HHH-HHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence             010 011  11345678899986443 233 333444555654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.80  E-value=0.0015  Score=66.13  Aligned_cols=70  Identities=17%  Similarity=0.170  Sum_probs=53.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----------c--ccccccccCCCCccEEEEcC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----------L--HFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----------~--~~~~l~~~~~~~~divInat  435 (518)
                      .++.|+|+|.+|.+++..|.+.|++|++++|+.++++++.+..+...          +  ...++.+ ...++|+||.|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~~v   83 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL-AVKDADVILIVV   83 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH-HHTTCSEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHH-HHhcCCEEEEeC
Confidence            58999999999999999999999999999999999998877642100          0  1122222 235689999999


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      |..
T Consensus        84 ~~~   86 (359)
T 1bg6_A           84 PAI   86 (359)
T ss_dssp             CGG
T ss_pred             Cch
Confidence            854

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.78  E-value=0.0036  Score=60.20  Aligned_cols=71  Identities=25%  Similarity=0.329  Sum_probs=51.9

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---ccc----c--CCCCccEEEE
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHE----F--FPEKGMILAN  433 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~----~--~~~~~divIn  433 (518)
                      |+++|.|+ ||.|++++..|++.|++|++++|+.+++++++++++...    .++.+   +..    .  .....|++||
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            46889987 689999999999999999999999999999888775321    11111   110    0  1236799999


Q ss_pred             cCCCC
Q 010101          434 ASAIG  438 (518)
Q Consensus       434 atp~g  438 (518)
                      +....
T Consensus        81 nAg~~   85 (248)
T 3asu_A           81 NAGLA   85 (248)
T ss_dssp             CCCCC
T ss_pred             CCCcC
Confidence            87653

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.77  E-value=0.0053  Score=60.47  Aligned_cols=47  Identities=26%  Similarity=0.354  Sum_probs=40.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFN-RNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~n-Rt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++ |+.++++++++++
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l   54 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATL   54 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH
Confidence            357899999987 6899999999999999999999 9999988887765

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.76  E-value=0.0023  Score=62.58  Aligned_cols=49  Identities=22%  Similarity=0.476  Sum_probs=43.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   56 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELE   56 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3578999999987 689999999999999999999999999988887764

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.76  E-value=0.0025  Score=61.12  Aligned_cols=48  Identities=31%  Similarity=0.466  Sum_probs=43.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   53 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQI   53 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            4578999999988 78999999999999999999999999999988776

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.74  E-value=0.0014  Score=70.95  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=42.0

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY-------------------ERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~-------------------~ka~~la~~~~  411 (518)
                      .+++++|+|+|+||.|..++..|+..|+ +|+|++++.                   .|++.+++.+.
T Consensus       323 kL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~  390 (615)
T 4gsl_A          323 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLK  390 (615)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHH
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHH
Confidence            4678999999999999999999999999 999999864                   57887776664

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.74  E-value=0.0023  Score=61.73  Aligned_cols=73  Identities=32%  Similarity=0.403  Sum_probs=51.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc--ccccc---cccc------CCCCccEEE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA--LHFEY---LHEF------FPEKGMILA  432 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~--~~~~~---l~~~------~~~~~divI  432 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++ ++++++++...  .++.+   +...      .....|++|
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhCCEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            56899999987 689999999999999999999999888 77776653111  11111   1110      113579999


Q ss_pred             EcCCCC
Q 010101          433 NASAIG  438 (518)
Q Consensus       433 natp~g  438 (518)
                      |+....
T Consensus        83 ~~Ag~~   88 (256)
T 2d1y_A           83 NNAAIA   88 (256)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            987654

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.74  E-value=0.034  Score=57.71  Aligned_cols=130  Identities=21%  Similarity=0.187  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNR----------NYERAKAL  406 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~-i~nR----------t~~ka~~l  406 (518)
                      +.|.+.+++..++.. |        .+++++++.|.|.|.+|..++..|.++|++|. |.+.          +.+.+.++
T Consensus       190 g~Gv~~~~~~~~~~~-g--------~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~  260 (421)
T 1v9l_A          190 GFGVAVATREMAKKL-W--------GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKN  260 (421)
T ss_dssp             HHHHHHHHHHHHHHH-H--------SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHT
T ss_pred             HHHHHHHHHHHHHhc-C--------CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHH
Confidence            567777777666543 2        47889999999999999999999999999655 8877          56666665


Q ss_pred             HHHhcC------------ccc-ccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHH-
Q 010101          407 ADAVSG------------EAL-HFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLL-  472 (518)
Q Consensus       407 a~~~~~------------~~~-~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll-  472 (518)
                      .+..+.            ..+ +-+++-   ...+||++.|.--+.   ++...  ...+ ...+|.+-.-.|- |+-- 
T Consensus       261 k~~~g~~~v~~y~~~~~~~~~~~~~~~~---~~~~Dil~P~A~~~~---I~~~~--a~~l-~ak~V~EgAN~p~-t~~a~  330 (421)
T 1v9l_A          261 KGLTGPALVELFTTKDNAEFVKNPDAIF---KLDVDIFVPAAIENV---IRGDN--AGLV-KARLVVEGANGPT-TPEAE  330 (421)
T ss_dssp             TTSCHHHHHHHHHHTSCCCCCSSTTGGG---GCCCSEEEECSCSSC---BCTTT--TTTC-CCSEEECCSSSCB-CHHHH
T ss_pred             HHhhCCccccccccccCceEeCCchhhh---cCCccEEEecCcCCc---cchhh--HHHc-CceEEEecCCCcC-CHHHH
Confidence            443221            212 212221   236899998874332   12211  1223 4578889887774 5333 


Q ss_pred             HHHHHCCCeeeccH
Q 010101          473 REAAEVGATVVSGV  486 (518)
Q Consensus       473 ~~A~~~G~~~i~G~  486 (518)
                      +.-+++|+.++++.
T Consensus       331 ~~l~~~Gi~~~PD~  344 (421)
T 1v9l_A          331 RILYERGVVVVPDI  344 (421)
T ss_dssp             HHHHTTTCEEECHH
T ss_pred             HHHHHCCCEEeChH
Confidence            33356899888654

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.73  E-value=0.0023  Score=62.46  Aligned_cols=50  Identities=30%  Similarity=0.444  Sum_probs=45.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG  412 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~  412 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.+++++++++++.
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~   76 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGN   76 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC
Confidence            3578999999988 6899999999999999999999999999999988864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.73  E-value=0.00077  Score=66.48  Aligned_cols=110  Identities=17%  Similarity=0.228  Sum_probs=66.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCC-CCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGME-PNSDQSP  447 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~-~~~~~~~  447 (518)
                      ++.|||+|.+|++++..|.+.|++|++++|+.++++++.+. +...  ..++.+ ...++|+||.++|.... ...-. .
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~-~~~~~Dvvi~~vp~~~~~~~v~~-~   76 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDA-GEQV--VSSPAD-VAEKADRIITMLPTSINAIEAYS-G   76 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTT-TCEE--CSSHHH-HHHHCSEEEECCSSHHHHHHHHH-S
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCee--cCCHHH-HHhcCCEEEEeCCCHHHHHHHHh-C
Confidence            58999999999999999999999999999999998887653 3211  112222 23457999999864311 00000 0


Q ss_pred             CC--hhhhcCCCEEEEEeeCCCch--HHHHHHHHCCCeee
Q 010101          448 VP--KEALKAYELVFDAVYTPRNT--RLLREAAEVGATVV  483 (518)
Q Consensus       448 ~~--~~~l~~~~~v~Di~Y~P~~T--~ll~~A~~~G~~~i  483 (518)
                      +.  ...++++.+++|..-.+..+  .+.+...+.|..+.
T Consensus        77 ~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~  116 (296)
T 2gf2_A           77 ANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFM  116 (296)
T ss_dssp             TTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             chhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            00  01345677888844333222  22233444565443

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.73  E-value=0.0017  Score=62.58  Aligned_cols=47  Identities=23%  Similarity=0.524  Sum_probs=41.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-NYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-t~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|+++.| +.++++++.+.+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l   52 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEI   52 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHH
Confidence            356899999987 78999999999999999999999 888888777665

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.72  E-value=0.0018  Score=65.87  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=77.6

Q ss_pred             CcEEEEEccchhHH-HHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGR-ALAFGAKSR-GARV-IIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       367 ~k~vlvlGaGg~ar-aia~~L~~~-G~~v-~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..++.|||+|.+|+ ..+.+|.+. +++| .|++|+.++++++++.++... -+++++-+  ..+.|+|+.|||..... 
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~-  103 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLE--RDDVDAVYVPLPAVLHA-  103 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHT--CTTCSEEEECCCGGGHH-
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhc--CCCCCEEEECCCcHHHH-
Confidence            45899999999998 788888887 5665 599999999999999987643 23444321  24689999999865432 


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHH
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml  489 (518)
                          ++....+..+.-|+  +=+|.-      -.+.+.|++.|..+.-|...-
T Consensus       104 ----~~~~~al~aGk~Vl--~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R  150 (350)
T 3rc1_A          104 ----EWIDRALRAGKHVL--AEKPLTTDRPQAERLFAVARERGLLLMENFMFL  150 (350)
T ss_dssp             ----HHHHHHHHTTCEEE--EESSSCSSHHHHHHHHHHHHHTTCCEEEECGGG
T ss_pred             ----HHHHHHHHCCCcEE--EeCCCCCCHHHHHHHHHHHHHhCCEEEEEeccc
Confidence                12233455554333  334532      356778888998877665543

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.72  E-value=0.00092  Score=65.62  Aligned_cols=65  Identities=25%  Similarity=0.334  Sum_probs=44.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeE-EEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARV-IIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v-~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ++.|||+|.+|++++..|.+. ++| .+++|+.++++++++.++.   ...++.+ ...++|+||-|+|..
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~---~~~~~~~-~~~~~DvVilav~~~   69 (276)
T 2i76_A            4 VLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG---KAATLEK-HPELNGVVFVIVPDR   69 (276)
T ss_dssp             CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC---CCCSSCC-CCC---CEEECSCTT
T ss_pred             eEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC---ccCCHHH-HHhcCCEEEEeCChH
Confidence            588999999999999999877 888 5999999999999887764   1223322 234577777777654

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.72  E-value=0.0013  Score=63.05  Aligned_cols=73  Identities=27%  Similarity=0.413  Sum_probs=52.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-cc--ccccc---cccc--CCCCccEEEEcC
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG-EA--LHFEY---LHEF--FPEKGMILANAS  435 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~-~~--~~~~~---l~~~--~~~~~divInat  435 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.+++++++ ++.. ..  .++.+   +...  .....|++||+.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~A   82 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVA   82 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECC
Confidence            56899999988 78999999999999999999999998887766 4321 11  11211   1110  134579999987


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      ...
T Consensus        83 g~~   85 (246)
T 2ag5_A           83 GFV   85 (246)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            643

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.72  E-value=0.001  Score=67.39  Aligned_cols=112  Identities=21%  Similarity=0.178  Sum_probs=74.0

Q ss_pred             cEEEEEccchhHHHHHHHHH-HC-CCe-EEEEeCCHHHHHHHHHHhcC--c-ccccccccccCCCCccEEEEcCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAK-SR-GAR-VIIFNRNYERAKALADAVSG--E-ALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~-~~-G~~-v~i~nRt~~ka~~la~~~~~--~-~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .++.|||+|.+|+..+.+|. .. +++ +.+++|+.++++++++.++.  . .-+++++-+  ..+.|+|+.|||.....
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~   80 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLA--DENVDAVLVTSWGPAHE   80 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHH--CTTCCEEEECSCGGGHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhc--CCCCCEEEECCCchhHH
Confidence            37999999999999999998 53 566 45999999999999999873  2 123444322  24589999999865332


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCee-eccHHH
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATV-VSGVEM  488 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~-i~G~~m  488 (518)
                           ++....+..+.-|+  +=+|.-      -.+.+.|++.|..+ .-|..+
T Consensus        81 -----~~~~~al~~Gk~vl--~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~  127 (344)
T 3mz0_A           81 -----SSVLKAIKAQKYVF--CEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMR  127 (344)
T ss_dssp             -----HHHHHHHHTTCEEE--ECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGG
T ss_pred             -----HHHHHHHHCCCcEE--EcCCCCCCHHHHHHHHHHHHHHCCEEEEEeccc
Confidence                 12233455554332  334532      34677788888876 455443

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.72  E-value=0.0069  Score=59.26  Aligned_cols=49  Identities=31%  Similarity=0.411  Sum_probs=42.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC----------------HHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN----------------YERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt----------------~~ka~~la~~~~  411 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+                .++++++++.+.
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVK   72 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHh
Confidence            3578999999988 689999999999999999999887                778888777653

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.69  E-value=0.0021  Score=61.94  Aligned_cols=47  Identities=21%  Similarity=0.218  Sum_probs=42.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEI   51 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            457899999987 58999999999999999999999999999888776

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.69  E-value=0.002  Score=65.85  Aligned_cols=70  Identities=17%  Similarity=0.164  Sum_probs=51.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCcc---------ccc-ccccccCCCCccEEEEcC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV-SGEA---------LHF-EYLHEFFPEKGMILANAS  435 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~-~~~~---------~~~-~~l~~~~~~~~divInat  435 (518)
                      ..++.|||+|.+|.+++..|++.|.+|++++|++++++++.+.- +...         +.. .++.+ ...++|+||-++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~e-a~~~aDvVilaV  107 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKA-SLEGVTDILIVV  107 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHH-HHTTCCEEEECC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHH-HHhcCCEEEECC
Confidence            35899999999999999999999999999999999998887652 1111         011 12222 245678888888


Q ss_pred             CC
Q 010101          436 AI  437 (518)
Q Consensus       436 p~  437 (518)
                      |.
T Consensus       108 p~  109 (356)
T 3k96_A          108 PS  109 (356)
T ss_dssp             CH
T ss_pred             CH
Confidence            74

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.69  E-value=0.0014  Score=66.27  Aligned_cols=113  Identities=18%  Similarity=0.142  Sum_probs=76.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCc--ccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-GARV-IIFNRNYERAKALADAVSGE--ALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-G~~v-~i~nRt~~ka~~la~~~~~~--~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .++.|||+|.+|+..+.+|.+. +++| .|++|+.++++++++.++..  +.+++++-+  ..+.|+|+.|||.....  
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~--   78 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIE--DPNVDAVLVCSSTNTHS--   78 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHH--CTTCCEEEECSCGGGHH--
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhc--CCCCCEEEEcCCCcchH--
Confidence            3799999999999999999876 5564 59999999999999998753  224444322  24689999999865321  


Q ss_pred             CCCCCChhhhcCCCEEEEEeeCCC------chHHHHHHHHCCCeeeccHHHH
Q 010101          444 DQSPVPKEALKAYELVFDAVYTPR------NTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       444 ~~~~~~~~~l~~~~~v~Di~Y~P~------~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                         ++....+..+.-|+  +=+|.      --.+.+.|++.|..+.-|..+-
T Consensus        79 ---~~~~~al~~gk~v~--~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R  125 (344)
T 3ezy_A           79 ---ELVIACAKAKKHVF--CEKPLSLNLADVDRMIEETKKADVILFTGFNRR  125 (344)
T ss_dssp             ---HHHHHHHHTTCEEE--EESCSCSCHHHHHHHHHHHHHHTCCEEEECGGG
T ss_pred             ---HHHHHHHhcCCeEE--EECCCCCCHHHHHHHHHHHHHhCCcEEEeeccc
Confidence               12223455444333  33442      2456777888888877666544

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.68  E-value=0.003  Score=60.57  Aligned_cols=47  Identities=36%  Similarity=0.557  Sum_probs=42.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   51 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDEL   51 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            367899999987 68999999999999999999999999988887766

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.68  E-value=0.001  Score=67.86  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=38.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA  409 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~  409 (518)
                      ++.|||+|.+|.+++..|.+.|++|++++|+.++++.+.+.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~   57 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK   57 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc
Confidence            79999999999999999999999999999999999888765

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=96.67  E-value=0.0012  Score=67.02  Aligned_cols=114  Identities=14%  Similarity=0.117  Sum_probs=75.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSR--GAR-VIIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~--G~~-v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..++.|||+|.+|+..+.+|.+.  +++ +.+++|+.++++++++.++... -+++++-+  ..+.|+|+.|||..... 
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~-   89 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLA--QTDADIVILTTPSGLHP-   89 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHH--HCCCSEEEECSCGGGHH-
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhc--CCCCCEEEECCCcHHHH-
Confidence            35899999999999999999987  566 5599999999999999987532 23333211  13689999999865321 


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHH
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml  489 (518)
                          ++....+..+.-|+  +=+|.-      -.+.+.|++.|..+.-|...-
T Consensus        90 ----~~~~~al~~gk~v~--~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r  136 (354)
T 3q2i_A           90 ----TQSIECSEAGFHVM--TEKPMATRWEDGLEMVKAADKAKKHLFVVKQNR  136 (354)
T ss_dssp             ----HHHHHHHHTTCEEE--ECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGG
T ss_pred             ----HHHHHHHHCCCCEE--EeCCCcCCHHHHHHHHHHHHHhCCeEEEEEccc
Confidence                12223454444332  224531      356677788888776555433

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.67  E-value=0.0024  Score=62.21  Aligned_cols=67  Identities=21%  Similarity=0.163  Sum_probs=51.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc--cccccccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA--LHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~--~~~~~l~~~~~~~~divInatp~  437 (518)
                      .++++|+|||..|++++..|.+.|++|+++.|+.+++..+... +.+.  .++.++.   ..++|+||++.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~D~~d~~---~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRAS-GAEPLLWPGEEPS---LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHT-TEEEEESSSSCCC---CTTCCEEEECCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhC-CCeEEEecccccc---cCCCCEEEECCCc
Confidence            4789999999999999999999999999999999888766532 2222  1333332   4678999998764

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.67  E-value=0.0036  Score=60.04  Aligned_cols=75  Identities=24%  Similarity=0.263  Sum_probs=51.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCcc----ccccc---cccc------CCCCc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY-ERAKALADAVSGEA----LHFEY---LHEF------FPEKG  428 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~-~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~  428 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+. +++++..+..+...    .++.+   +...      .....
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRC   83 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            357899999987 6899999999999999999999998 77665444444221    12211   1110      12357


Q ss_pred             cEEEEcCCCC
Q 010101          429 MILANASAIG  438 (518)
Q Consensus       429 divInatp~g  438 (518)
                      |++||+....
T Consensus        84 d~lv~nAg~~   93 (249)
T 2ew8_A           84 DILVNNAGIY   93 (249)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999987653

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.67  E-value=0.0031  Score=61.17  Aligned_cols=48  Identities=27%  Similarity=0.297  Sum_probs=43.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   52 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESAL   52 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3578999999987 68999999999999999999999999988887765

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.66  E-value=0.0011  Score=66.30  Aligned_cols=110  Identities=14%  Similarity=0.103  Sum_probs=68.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCC-
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQS-  446 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~-  446 (518)
                      .++.|||+|.+|++++..|.+.|++|++++|+.++++++.+ .+...  ..++.+ ...++|+||.|+|....  .... 
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-~g~~~--~~~~~~-~~~~~DvVi~av~~~~~--~~~v~  104 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ-EGARL--GRTPAE-VVSTCDITFACVSDPKA--AKDLV  104 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH-TTCEE--CSCHHH-HHHHCSEEEECCSSHHH--HHHHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-cCCEE--cCCHHH-HHhcCCEEEEeCCCHHH--HHHHH
Confidence            67999999999999999999999999999999999888765 23221  112222 23457999999983210  0000 


Q ss_pred             -CCC--hhhhcCCCEEEEEeeCCCc--hHHHHHHHHCCCeee
Q 010101          447 -PVP--KEALKAYELVFDAVYTPRN--TRLLREAAEVGATVV  483 (518)
Q Consensus       447 -~~~--~~~l~~~~~v~Di~Y~P~~--T~ll~~A~~~G~~~i  483 (518)
                       .+.  ...+.++.+++|+.-....  ..+.+...+.|..++
T Consensus       105 ~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v  146 (316)
T 2uyy_A          105 LGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFL  146 (316)
T ss_dssp             HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             cCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence             000  1234567788887643221  223333445566554

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.66  E-value=0.037  Score=57.34  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHH-CCCeEE-EEeC----------CHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKS-RGARVI-IFNR----------NYERAKA  405 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~-~G~~v~-i~nR----------t~~ka~~  405 (518)
                      +.|.+.+++..++.. |        .+++++++.|.|.|.+|+.++..|.+ +|++|. |.++          +.+.+.+
T Consensus       189 g~Gv~~~~~~~~~~~-g--------~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~  259 (415)
T 2tmg_A          189 GRGVKVCAGLAMDVL-G--------IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIR  259 (415)
T ss_dssp             HHHHHHHHHHHHHHT-T--------CCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-C--------CCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHH
Confidence            567777777766553 3        57889999999999999999999998 999655 7777          7888888


Q ss_pred             HHHHhcC-------cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChh---hhcCCCEEEEEeeCCCchHHHHHH
Q 010101          406 LADAVSG-------EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKE---ALKAYELVFDAVYTPRNTRLLREA  475 (518)
Q Consensus       406 la~~~~~-------~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~---~l~~~~~v~Di~Y~P~~T~ll~~A  475 (518)
                      +.++.+.       +.++-+++   ....+|++|.|+.-+.        +..+   .+ ...+|..-.-.|-...--+.-
T Consensus       260 ~~~~~g~l~~y~~a~~~~~~ei---l~~~~DIliP~A~~n~--------i~~~~a~~l-~ak~V~EgAN~p~t~~a~~~l  327 (415)
T 2tmg_A          260 YKKEHGTVVTYPKGERITNEEL---LELDVDILVPAALEGA--------IHAGNAERI-KAKAVVEGANGPTTPEADEIL  327 (415)
T ss_dssp             HHHHSSCSTTCSSSEEECHHHH---TTCSCSEEEECSSTTS--------BCHHHHTTC-CCSEEECCSSSCBCHHHHHHH
T ss_pred             HHHhhCCcccCCCceEcCchhh---hcCCCcEEEecCCcCc--------cCcccHHHc-CCeEEEeCCCcccCHHHHHHH
Confidence            8776441       11111121   1246899999886432        2222   23 457888888777532233344


Q ss_pred             HHCCCeeeccHH
Q 010101          476 AEVGATVVSGVE  487 (518)
Q Consensus       476 ~~~G~~~i~G~~  487 (518)
                      +++|+.+++..-
T Consensus       328 ~~~Gi~~~PD~~  339 (415)
T 2tmg_A          328 SRRGILVVPDIL  339 (415)
T ss_dssp             HHTTCEEECHHH
T ss_pred             HHCCCEEEChHH
Confidence            678998886543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.65  E-value=0.0032  Score=61.03  Aligned_cols=48  Identities=27%  Similarity=0.442  Sum_probs=43.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   56 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVT   56 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHH
Confidence            468999999988 689999999999999999999999999999887763

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.65  E-value=0.0027  Score=60.53  Aligned_cols=49  Identities=24%  Similarity=0.470  Sum_probs=43.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++.+++++++.
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   59 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIK   59 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHH
Confidence            3578999999988 789999999999999999999999999988877663

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.64  E-value=0.0027  Score=61.27  Aligned_cols=48  Identities=25%  Similarity=0.462  Sum_probs=43.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++++++++++.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIE   51 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999987 689999999999999999999999999999988774

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.64  E-value=0.0026  Score=61.65  Aligned_cols=49  Identities=24%  Similarity=0.346  Sum_probs=44.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   55 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLD   55 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            4578999999987 689999999999999999999999999998887764

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.63  E-value=0.0024  Score=63.69  Aligned_cols=101  Identities=18%  Similarity=0.063  Sum_probs=63.8

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-GARVI-IFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-G~~v~-i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      -++.|||+|.+|+..+.+|.+. +++|. +++|+++++++    ++.....++++.+ . .+.|+||.|||.....    
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~----~g~~~~~~~~l~~-~-~~~DvViiatp~~~h~----   79 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF----ELQPFRVVSDIEQ-L-ESVDVALVCSPSREVE----   79 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-----------CCTTSCEESSGGG-S-SSCCEEEECSCHHHHH----
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH----cCCCcCCHHHHHh-C-CCCCEEEECCCchhhH----
Confidence            5899999999999999999875 45765 89999988765    4433323455544 2 5789999999865431    


Q ss_pred             CCCChhhhcCCCEEEEEeeCCC-c------hHHHHHHHHCCCe
Q 010101          446 SPVPKEALKAYELVFDAVYTPR-N------TRLLREAAEVGAT  481 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~Y~P~-~------T~ll~~A~~~G~~  481 (518)
                       +.....+..+.-|+|-  +|. .      ..+.+.|++.|..
T Consensus        80 -~~~~~al~aG~~Vi~e--kP~~a~~~~~~~~l~~~a~~~g~~  119 (304)
T 3bio_A           80 -RTALEILKKGICTADS--FDIHDGILALRRSLGDAAGKSGAA  119 (304)
T ss_dssp             -HHHHHHHTTTCEEEEC--CCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred             -HHHHHHHHcCCeEEEC--CCCCCCCHHHHHHHHHHHHhCCCE
Confidence             1223456667777764  564 2      4566777887754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.63  E-value=0.0026  Score=61.50  Aligned_cols=48  Identities=29%  Similarity=0.400  Sum_probs=43.9

Q ss_pred             cccCCcEEEEEcc-c-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-G-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-G-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ | |.|++++..|++.|++|++++|+.++.+++.+++
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l   67 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQL   67 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH
Confidence            3478999999999 8 8999999999999999999999999998888776

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.63  E-value=0.0035  Score=66.07  Aligned_cols=101  Identities=19%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc----------------cccc-ccccccCCCCccE
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE----------------ALHF-EYLHEFFPEKGMI  430 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~----------------~~~~-~~l~~~~~~~~di  430 (518)
                      .++.|||+|-+|.+++..|++.|.+|++++|++++++.+.+.....                .+.+ .++.+ ...++|+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~e-a~~~aDv   81 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQ-AVPEADI   81 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHH-HGGGCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHH-HHhcCCE
Confidence            4799999999999999999999999999999999999987632110                0011 12222 2456899


Q ss_pred             EEEcCCCCCCCCCCC--CCCC---h---hhhcCCCEEEEEeeCCCch
Q 010101          431 LANASAIGMEPNSDQ--SPVP---K---EALKAYELVFDAVYTPRNT  469 (518)
Q Consensus       431 vInatp~g~~~~~~~--~~~~---~---~~l~~~~~v~Di~Y~P~~T  469 (518)
                      ||-|+|....++...  ..+.   .   ..++++.+|++.+..|..|
T Consensus        82 ViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  128 (450)
T 3gg2_A           82 IFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGS  128 (450)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             EEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcc
Confidence            999987653221110  0010   0   1246678888887665443

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.62  E-value=0.0027  Score=61.09  Aligned_cols=47  Identities=23%  Similarity=0.451  Sum_probs=42.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEI   51 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            356899999988 68999999999999999999999999998887765

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.62  E-value=0.00041  Score=67.82  Aligned_cols=41  Identities=20%  Similarity=0.317  Sum_probs=35.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERA  403 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka  403 (518)
                      ..+++|++||.|+ ||.|++++..|++.|++|++++|+.++.
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~   51 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD   51 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc
Confidence            5678999999988 6899999999999999999999987654

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.62  E-value=0.0037  Score=61.11  Aligned_cols=47  Identities=30%  Similarity=0.399  Sum_probs=40.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .++ |+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++.
T Consensus        19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~   66 (272)
T 2nwq_A           19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELS   66 (272)
T ss_dssp             --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT
T ss_pred             CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh
Confidence            355 88999987 689999999999999999999999999998887764

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.62  E-value=0.007  Score=64.51  Aligned_cols=95  Identities=17%  Similarity=0.170  Sum_probs=60.5

Q ss_pred             CcEEEEEccchhHHH-HHHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRA-LAFGAKSRGARVIIFNRNYER-AKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       367 ~k~vlvlGaGg~ara-ia~~L~~~G~~v~i~nRt~~k-a~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      .++++|+|.||+|.+ +|..|.++|++|+++++..+. .+.|. ..+.....-.+ .+ .+.++|+||-+  +|      
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~-~~gi~~~~g~~-~~-~~~~~d~vV~S--pg------   90 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLT-ALGAQIYFHHR-PE-NVLDASVVVVS--TA------   90 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HTTCEEESSCC-GG-GGTTCSEEEEC--TT------
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHH-HCCCEEECCCC-HH-HcCCCCEEEEC--CC------
Confidence            589999999999996 789999999999999986443 22222 22221100000 00 11223444421  11      


Q ss_pred             CCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHH
Q 010101          445 QSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQ  492 (518)
Q Consensus       445 ~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Q  492 (518)
                                          -|...|.+++|+++|++++...++|.+.
T Consensus        91 --------------------i~~~~p~~~~a~~~gi~v~~~~e~l~~~  118 (494)
T 4hv4_A           91 --------------------ISADNPEIVAAREARIPVIRRAEMLAEL  118 (494)
T ss_dssp             --------------------SCTTCHHHHHHHHTTCCEEEHHHHHHHH
T ss_pred             --------------------CCCCCHHHHHHHHCCCCEEcHHHHHHHH
Confidence                                1335678899999999999999998653

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.61  E-value=0.0044  Score=62.20  Aligned_cols=71  Identities=17%  Similarity=0.206  Sum_probs=53.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC-------cccccccccccCCCCccEEEEcCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSG-------EALHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~-------~~~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      ++.|||+|.+|.+++..|+..|.  +|++++|+.++++.++..+..       ..+...+. + ...++|+||.|++.+.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~-~-~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY-A-DLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG-G-GGTTCSEEEECCCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCH-H-HhCCCCEEEEccCCCC
Confidence            68999999999999999999887  899999999998887654421       01111222 2 3467999999998765


Q ss_pred             CC
Q 010101          440 EP  441 (518)
Q Consensus       440 ~~  441 (518)
                      .|
T Consensus        80 ~~   81 (319)
T 1a5z_A           80 KP   81 (319)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.61  E-value=0.0028  Score=61.71  Aligned_cols=45  Identities=29%  Similarity=0.530  Sum_probs=41.4

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   48 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEI   48 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            5789999988 68999999999999999999999999999988776

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.61  E-value=0.0036  Score=61.38  Aligned_cols=73  Identities=27%  Similarity=0.365  Sum_probs=55.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCccE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKGMI  430 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~di  430 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++.+.++....    ++.+   +...      .....|+
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   82 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDT   82 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            56899999987 6899999999999999999999999999999888764321    1111   1100      1235799


Q ss_pred             EEEcCCC
Q 010101          431 LANASAI  437 (518)
Q Consensus       431 vInatp~  437 (518)
                      +||+...
T Consensus        83 lvnnAg~   89 (281)
T 3zv4_A           83 LIPNAGI   89 (281)
T ss_dssp             EECCCCC
T ss_pred             EEECCCc
Confidence            9998754

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.61  E-value=0.0042  Score=59.97  Aligned_cols=48  Identities=21%  Similarity=0.211  Sum_probs=42.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   53 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW   53 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3577899999987 68999999999999999999999999988877665

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.60  E-value=0.0023  Score=59.78  Aligned_cols=69  Identities=25%  Similarity=0.256  Sum_probs=49.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--ccccccccCCCCccEEEEcCCCC
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~~l~~~~~~~~divInatp~g  438 (518)
                      +++|+|+ |+.|++++..|.+.|++|+++.|+.++++.+... +...+  ++.+.......+.|+|||+....
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   73 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGA-TVATLVKEPLVLTEADLDSVDAVVDALSVP   73 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCT-TSEEEECCGGGCCHHHHTTCSEEEECCCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCC-CceEEecccccccHhhcccCCEEEECCccC
Confidence            6899998 8899999999999999999999999887765321 11111  22221111245689999988664

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.60  E-value=0.0046  Score=60.38  Aligned_cols=48  Identities=25%  Similarity=0.383  Sum_probs=40.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------HHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN------------YERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt------------~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+            .++++++.+.+
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~   66 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV   66 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHH
Confidence            3578999999987 689999999999999999999997            66666655544

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.60  E-value=0.0017  Score=67.57  Aligned_cols=107  Identities=14%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.||++.|||.|.+|++++..|...|++|+.++|+.....      + ......++.+ .+.++|+|+.++|..-  .
T Consensus       152 ~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~------~-~~~~~~sl~e-ll~~aDvV~lhvPlt~--~  221 (416)
T 3k5p_A          152 REVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY------G-NVKPAASLDE-LLKTSDVVSLHVPSSK--S  221 (416)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB------T-TBEECSSHHH-HHHHCSEEEECCCC-----
T ss_pred             ccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc------c-CcEecCCHHH-HHhhCCEEEEeCCCCH--H
Confidence            468899999999999999999999999999999999743210      0 0111222333 3346899998888642  1


Q ss_pred             CCCCCCChh---hhcCCCEEEEEeeCCC-chHHHHHHHHCCC
Q 010101          443 SDQSPVPKE---ALKAYELVFDAVYTPR-NTRLLREAAEVGA  480 (518)
Q Consensus       443 ~~~~~~~~~---~l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~  480 (518)
                       ....+..+   .++++.+++|+.-.+. .+.-+.+|-+.|.
T Consensus       222 -T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~  262 (416)
T 3k5p_A          222 -TSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGH  262 (416)
T ss_dssp             ---CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTS
T ss_pred             -HhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCC
Confidence             11234443   3467777777776543 4544455555443

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.59  E-value=0.0041  Score=62.81  Aligned_cols=75  Identities=16%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcCcc-----ccccc---ccccCCCCccEE
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSR-GA-RVIIFNRNYERAKALADAVSGEA-----LHFEY---LHEFFPEKGMIL  431 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~-G~-~v~i~nRt~~ka~~la~~~~~~~-----~~~~~---l~~~~~~~~div  431 (518)
                      ..++++++||.|+ |+.|++++..|.+. |+ +|++++|+.++.+.+.+.+....     .++.+   +.. ...+.|+|
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~-~~~~~D~V   95 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNY-ALEGVDIC   95 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHH-HTTTCSEE
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHH-HHhcCCEE
Confidence            3467899999996 88999999999998 98 99999999999888887764211     12222   222 34578999


Q ss_pred             EEcCCCC
Q 010101          432 ANASAIG  438 (518)
Q Consensus       432 Inatp~g  438 (518)
                      |++....
T Consensus        96 ih~Aa~~  102 (344)
T 2gn4_A           96 IHAAALK  102 (344)
T ss_dssp             EECCCCC
T ss_pred             EECCCCC
Confidence            9988653

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.59  E-value=0.021  Score=59.36  Aligned_cols=129  Identities=16%  Similarity=0.205  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEE-EEeCC---------------HH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRN---------------YE  401 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~-i~nRt---------------~~  401 (518)
                      +.|.+.+++..++.. |        .+++++++.|.|.|.+|+.++..|.++|++|+ |.+.+               .+
T Consensus       192 g~Gv~~~~~~~~~~~-g--------~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~  262 (421)
T 2yfq_A          192 GFGVAVVVRESAKRF-G--------IKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFK  262 (421)
T ss_dssp             HHHHHHHHHHHHHHT-T--------CCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHH
T ss_pred             HHHHHHHHHHHHHhc-C--------CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHH
Confidence            567777777766542 3        46889999999999999999999999999655 88888               36


Q ss_pred             HHHHHHHHhcC-------cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChh---hhcCCCEEEEEeeCCCchHH
Q 010101          402 RAKALADAVSG-------EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKE---ALKAYELVFDAVYTPRNTRL  471 (518)
Q Consensus       402 ka~~la~~~~~-------~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~---~l~~~~~v~Di~Y~P~~T~l  471 (518)
                      ...++.+..+.       +.++-+++   ...++||+|.|+.-+.        +..+   .+ ...+|++-.-.|-....
T Consensus       263 ~l~~~~~~~g~i~~~~~a~~i~~~~~---~~~~~DIliP~A~~n~--------i~~~~A~~l-~ak~VvEgAN~P~t~ea  330 (421)
T 2yfq_A          263 ELLAYKEANKTLIGFPGAERITDEEF---WTKEYDIIVPAALENV--------ITGERAKTI-NAKLVCEAANGPTTPEG  330 (421)
T ss_dssp             HHHHHHHHHCC------------------------CEEECSCSSC--------SCHHHHTTC-CCSEEECCSSSCSCHHH
T ss_pred             HHHHHHHhcCCcccCCCceEeCccch---hcCCccEEEEcCCcCc--------CCcccHHHc-CCeEEEeCCccccCHHH
Confidence            66666665441       11111222   1235899998875332        2222   23 45789999877853333


Q ss_pred             HHHHHHCCCeeeccHH
Q 010101          472 LREAAEVGATVVSGVE  487 (518)
Q Consensus       472 l~~A~~~G~~~i~G~~  487 (518)
                      .+.-+++|+.++++.-
T Consensus       331 ~~il~~~GI~~~Pd~~  346 (421)
T 2yfq_A          331 DKVLTERGINLTPDIL  346 (421)
T ss_dssp             HHHHHHHTCEEECHHH
T ss_pred             HHHHHHCCCEEEChHH
Confidence            3444678998886654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.59  E-value=0.0022  Score=62.04  Aligned_cols=64  Identities=19%  Similarity=0.133  Sum_probs=48.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeC--CHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNR--NYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nR--t~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      ++.|||+|.+|.+++..|.+.|++|++++|  +.++++++.+. +..    .+..+ ...++|+||-++|..
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~-g~~----~~~~~-~~~~aDvvi~~v~~~   67 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTV-GVT----ETSEE-DVYSCPVVISAVTPG   67 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-TCE----ECCHH-HHHTSSEEEECSCGG
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHC-CCc----CCHHH-HHhcCCEEEEECCCH
Confidence            689999999999999999999999999999  77777777653 322    22222 234679999888754

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.58  E-value=0.0028  Score=62.04  Aligned_cols=49  Identities=27%  Similarity=0.474  Sum_probs=43.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .++++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++.
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~   77 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIA   77 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3578999999987 689999999999999999999999999888887763

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.58  E-value=0.0018  Score=65.84  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=51.5

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEE----------eCC---------HHHHHHHHHHhcC--cccc-----
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIF----------NRN---------YERAKALADAVSG--EALH-----  416 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~----------nRt---------~~ka~~la~~~~~--~~~~-----  416 (518)
                      .+.+++|+|+|+||.|..++..|+..|+ +|+|+          ||.         ..||+.+++.+..  ..+.     
T Consensus        33 ~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~  112 (346)
T 1y8q_A           33 RLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT  112 (346)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence            3567899999999999999999999999 99999          454         3588888776642  1111     


Q ss_pred             --ccc-ccccCCCCccEEEEcC
Q 010101          417 --FEY-LHEFFPEKGMILANAS  435 (518)
Q Consensus       417 --~~~-l~~~~~~~~divInat  435 (518)
                        +.+ ..+ ...++|+||+|+
T Consensus       113 ~~~~~~~~~-~~~~~dvVv~~~  133 (346)
T 1y8q_A          113 EDIEKKPES-FFTQFDAVCLTC  133 (346)
T ss_dssp             SCGGGCCHH-HHTTCSEEEEES
T ss_pred             cccCcchHH-HhcCCCEEEEcC
Confidence              111 111 245789999987

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.57  E-value=0.0014  Score=66.21  Aligned_cols=112  Identities=14%  Similarity=0.116  Sum_probs=73.9

Q ss_pred             CcEEEEEccchhHHHHHHHHH-HC-CCe-EEEEeCCHHHHHHHHHHhcCc-c-cccccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAK-SR-GAR-VIIFNRNYERAKALADAVSGE-A-LHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~-~~-G~~-v~i~nRt~~ka~~la~~~~~~-~-~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..++.|||+|.+|+..+..|. +. |++ +.+++|+.++++++++.++.. . -+++++-+  ..+.|+|+.+||.....
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~--~~~~D~V~i~tp~~~h~   85 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMID--TENIDAIFIVAPTPFHP   85 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHT--TSCCSEEEECSCGGGHH
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhc--CCCCCEEEEeCChHhHH
Confidence            358999999999999999988 54 565 678999999999999988752 1 23333211  13689999999864321


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHC-CCeeeccHH
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEV-GATVVSGVE  487 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~-G~~~i~G~~  487 (518)
                           ++....+..+..|+  +=+|..      ..+.+.|++. |..+.-|..
T Consensus        86 -----~~~~~al~~G~~v~--~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~  131 (346)
T 3cea_A           86 -----EMTIYAMNAGLNVF--CEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFM  131 (346)
T ss_dssp             -----HHHHHHHHTTCEEE--ECSCCCSCHHHHHHHHHHHHTCTTSCEECCCG
T ss_pred             -----HHHHHHHHCCCEEE--EcCCCCCCHHHHHHHHHHHHhCCCCeEEEecc
Confidence                 12223455554333  223431      2366777888 888766644

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.57  E-value=0.0039  Score=60.42  Aligned_cols=48  Identities=25%  Similarity=0.427  Sum_probs=42.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   57 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV   57 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3477899999987 68999999999999999999999999888877665

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.57  E-value=0.0024  Score=65.09  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=70.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCc--c---cccccccccCCCCccEEEEcCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-GAR-VIIFNRNYERAKALADAVSGE--A---LHFEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-G~~-v~i~nRt~~ka~~la~~~~~~--~---~~~~~l~~~~~~~~divInatp~g~~  440 (518)
                      -++.|||+|.+|+..+.+|.+. +++ +.|++|+.++++++++.++..  .   .+++++-+  ..+.|+|+.+||....
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h   84 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLE--DPEIDALYVPLPTSLH   84 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHH--CTTCCEEEECCCGGGH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhc--CCCCCEEEEcCChHHH
Confidence            4899999999999999999876 455 579999999999999998731  1   13333211  1358999999986543


Q ss_pred             CCCCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeecc
Q 010101          441 PNSDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSG  485 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G  485 (518)
                      .     ++....+..+.-|+  +-+|.-      ..+.+.|++.|..+.-|
T Consensus        85 ~-----~~~~~al~aGk~V~--~EKP~a~~~~e~~~l~~~a~~~g~~~~~~  128 (362)
T 1ydw_A           85 V-----EWAIKAAEKGKHIL--LEKPVAMNVTEFDKIVDACEANGVQIMDG  128 (362)
T ss_dssp             H-----HHHHHHHTTTCEEE--ECSSCSSSHHHHHHHHHHHHTTTCCEEEC
T ss_pred             H-----HHHHHHHHCCCeEE--EecCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence            1     12223444444332  224431      34556667777665544

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.56  E-value=0.0058  Score=59.04  Aligned_cols=46  Identities=24%  Similarity=0.377  Sum_probs=40.6

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHhc
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIF-NRNYERAKALADAVS  411 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~-nRt~~ka~~la~~~~  411 (518)
                      ++|+++|.|+ ||.|++++..|++.|++|.+. +|+.++++++++++.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~   50 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIE   50 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            4689999987 689999999999999998886 999999998887764

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.56  E-value=0.0032  Score=61.18  Aligned_cols=48  Identities=27%  Similarity=0.405  Sum_probs=42.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus        16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   64 (266)
T 4egf_A           16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRAL   64 (266)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3578999999987 68999999999999999999999999988887665

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.56  E-value=0.003  Score=59.33  Aligned_cols=39  Identities=18%  Similarity=0.330  Sum_probs=32.2

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      ..+..+++.|||+|.+|.+++..|.+.|.+|++++|+++
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            346678999999999999999999999999999999865

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.55  E-value=0.0035  Score=63.40  Aligned_cols=112  Identities=15%  Similarity=0.094  Sum_probs=75.6

Q ss_pred             EEEEEccchhHHH-HHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCc--ccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRA-LAFGAKSR-GARV-IIFNRNYERAKALADAVSGE--ALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       369 ~vlvlGaGg~ara-ia~~L~~~-G~~v-~i~nRt~~ka~~la~~~~~~--~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      |+.|||+|.+|+. .+.++... +++| .|++|+++++++++++++..  +-+++++-+  ..+.|+|+.|||.....  
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~--~~~iDaV~I~tP~~~H~--  100 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLA--SDVIDAVYIPLPTSQHI--  100 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHH--CSSCSEEEECSCGGGHH--
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhc--CCCCCEEEEeCCCchhH--
Confidence            8999999999975 56677766 5564 59999999999999999853  235555322  24689999999976432  


Q ss_pred             CCCCCChhhhcCCCEEEEEeeCCC------chHHHHHHHHCCCeeeccHHHH
Q 010101          444 DQSPVPKEALKAYELVFDAVYTPR------NTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       444 ~~~~~~~~~l~~~~~v~Di~Y~P~------~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                         ++....+..+.-|+  +=+|.      --.+++.|++.|..+.-|..+-
T Consensus       101 ---~~~~~al~aGkhVl--~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R  147 (350)
T 4had_A          101 ---EWSIKAADAGKHVV--CEKPLALKAGDIDAVIAARDRNKVVVTEAYMIT  147 (350)
T ss_dssp             ---HHHHHHHHTTCEEE--ECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGG
T ss_pred             ---HHHHHHHhcCCEEE--EeCCcccchhhHHHHHHHHHHcCCceeEeeeee
Confidence               12234455444332  22343      2567778888888877666543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.55  E-value=0.0041  Score=60.00  Aligned_cols=47  Identities=36%  Similarity=0.560  Sum_probs=42.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRI   51 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            357899999987 68999999999999999999999999988887765

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.55  E-value=0.0012  Score=69.62  Aligned_cols=74  Identities=18%  Similarity=0.054  Sum_probs=56.3

Q ss_pred             ccCC-cEEEEEccchhHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhcCccc--ccccccccCCCCccEEEEc
Q 010101          364 PIAG-KIFVLVGAGGAGRALAFGAKSR------GARVIIFNRNYERAKALADAVSGEAL--HFEYLHEFFPEKGMILANA  434 (518)
Q Consensus       364 ~l~~-k~vlvlGaGg~araia~~L~~~------G~~v~i~nRt~~ka~~la~~~~~~~~--~~~~l~~~~~~~~divIna  434 (518)
                      .++| +++.|||.|-+|.+++..|.+.      |.+|++.+|+.++..+.+...|....  ...++.+ ...++|+||.+
T Consensus        50 ~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aE-Aa~~ADVVILa  128 (525)
T 3fr7_A           50 AFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWE-TVSGSDLVLLL  128 (525)
T ss_dssp             HTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHH-HHHHCSEEEEC
T ss_pred             HhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHH-HHhcCCEEEEC
Confidence            3578 9999999999999999999988      88999999987777777777775421  1122222 34568999999


Q ss_pred             CCCC
Q 010101          435 SAIG  438 (518)
Q Consensus       435 tp~g  438 (518)
                      +|..
T Consensus       129 VP~~  132 (525)
T 3fr7_A          129 ISDA  132 (525)
T ss_dssp             SCHH
T ss_pred             CChH
Confidence            9864

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.55  E-value=0.0034  Score=60.70  Aligned_cols=47  Identities=34%  Similarity=0.570  Sum_probs=42.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|++||.|+ ||.|++++..|++.|++|.+++|+.++++++.+++
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   73 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREI   73 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            467899999987 78999999999999999999999999999887776

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.55  E-value=0.0065  Score=61.05  Aligned_cols=46  Identities=26%  Similarity=0.359  Sum_probs=40.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFN-RNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~n-Rt~~ka~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|++++ |+.++++++++++
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l   91 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATL   91 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            67899999987 6899999999999999999999 9999988887765

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.54  E-value=0.0043  Score=59.27  Aligned_cols=75  Identities=20%  Similarity=0.281  Sum_probs=55.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-----ccccc---ccccC-----CCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-----LHFEY---LHEFF-----PEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-----~~~~~---l~~~~-----~~~~d  429 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.++++...     .++.+   +....     ....|
T Consensus         8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id   87 (254)
T 2wsb_A            8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVS   87 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCc
Confidence            467899999987 789999999999999999999999999888877764322     11211   11100     13579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      +|||+....
T Consensus        88 ~li~~Ag~~   96 (254)
T 2wsb_A           88 ILVNSAGIA   96 (254)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCccC
Confidence            999987653

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.54  E-value=0.0033  Score=61.03  Aligned_cols=48  Identities=27%  Similarity=0.457  Sum_probs=43.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   55 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIR   55 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            567899999987 689999999999999999999999999888877663

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.53  E-value=0.003  Score=61.02  Aligned_cols=48  Identities=31%  Similarity=0.430  Sum_probs=43.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   56 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAI   56 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4578999999987 68999999999999999999999999999888766

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.53  E-value=0.0043  Score=59.13  Aligned_cols=72  Identities=21%  Similarity=0.347  Sum_probs=53.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCccEEE
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGMILA  432 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~divI  432 (518)
                      +|+++|.|+ ||.|++++..|++.|++|.+++|+.+++++++++++...    .++.+   +...      .....|++|
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv   82 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL   82 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            588999987 689999999999999999999999999999988775321    11111   1100      113579999


Q ss_pred             EcCCCC
Q 010101          433 NASAIG  438 (518)
Q Consensus       433 natp~g  438 (518)
                      |+...+
T Consensus        83 nnAg~~   88 (235)
T 3l6e_A           83 HCAGTG   88 (235)
T ss_dssp             EECCCC
T ss_pred             ECCCCC
Confidence            987653

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.53  E-value=0.036  Score=57.48  Aligned_cols=132  Identities=19%  Similarity=0.219  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCe-EEEEeCC----------HHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGAR-VIIFNRN----------YERAKAL  406 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~-v~i~nRt----------~~ka~~l  406 (518)
                      +.|....++..++.. |        .++++++|.|-|.|.+|..++..|.++|++ |.|.+.+          .+...++
T Consensus       201 g~Gv~~~~~~~~~~~-g--------~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~  271 (424)
T 3k92_A          201 AQGVTICIEEAVKKK-G--------IKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDK  271 (424)
T ss_dssp             HHHHHHHHHHHHHHT-T--------CCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-C--------CCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHH
Confidence            667777777666543 3        468899999999999999999999999996 5788887          6676666


Q ss_pred             HHHhcC------cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCC
Q 010101          407 ADAVSG------EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGA  480 (518)
Q Consensus       407 a~~~~~------~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~  480 (518)
                      .++.+.      +.++-+++-   ..++||+|-|..-+.   ++...  ...+ ...+|..-.-.|-...-.+.-+++|+
T Consensus       272 ~~~~g~i~~~~a~~~~~~~i~---~~~~DIliPcA~~n~---I~~~~--a~~l-~ak~V~EgAN~p~t~eA~~iL~~rGI  342 (424)
T 3k92_A          272 RDSFGMVTNLFTDVITNEELL---EKDCDILVPAAISNQ---ITAKN--AHNI-QASIVVERANGPTTIDATKILNERGV  342 (424)
T ss_dssp             CCSSSCCGGGCSCCBCHHHHH---HSCCSEEEECSCSSC---BCTTT--GGGC-CCSEEECCSSSCBCHHHHHHHHHTTC
T ss_pred             HHHhCCCCCCCcEEecCccce---eccccEEeecCcccc---cChhh--Hhhc-CceEEEcCCCCCCCHHHHHHHHHCCC
Confidence            544331      111112221   135899998775432   22221  1224 45789999988853223344467899


Q ss_pred             eeeccHH
Q 010101          481 TVVSGVE  487 (518)
Q Consensus       481 ~~i~G~~  487 (518)
                      .++++.-
T Consensus       343 ~~~PD~~  349 (424)
T 3k92_A          343 LLVPDIL  349 (424)
T ss_dssp             EEECHHH
T ss_pred             EEECchH
Confidence            8887754

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.53  E-value=0.0022  Score=64.56  Aligned_cols=113  Identities=18%  Similarity=0.134  Sum_probs=76.8

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCc--ccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-GARV-IIFNRNYERAKALADAVSGE--ALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-G~~v-~i~nRt~~ka~~la~~~~~~--~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .++.|||+|.+|+..+.+|.+. +++| .|++|+.++++++++.++..  .-+++++-+  ..+.|+|+.|||.....  
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~--   81 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCK--DETIDIIYIPTYNQGHY--   81 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHH--CTTCSEEEECCCGGGHH--
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhc--CCCCCEEEEcCCCHHHH--
Confidence            5899999999999999999986 5565 48999999999999998752  224444321  24689999999865321  


Q ss_pred             CCCCCChhhhcCC-CEEEEEeeCCC------chHHHHHHHHCCCeeeccHHHHH
Q 010101          444 DQSPVPKEALKAY-ELVFDAVYTPR------NTRLLREAAEVGATVVSGVEMFI  490 (518)
Q Consensus       444 ~~~~~~~~~l~~~-~~v~Di~Y~P~------~T~ll~~A~~~G~~~i~G~~ml~  490 (518)
                         ++....+..+ .++++   +|.      -..+.+.|++.|..+.-|...-.
T Consensus        82 ---~~~~~al~~gk~vl~E---KP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~  129 (330)
T 3e9m_A           82 ---SAAKLALSQGKPVLLE---KPFTLNAAEAEELFAIAQEQGVFLMEAQKSVF  129 (330)
T ss_dssp             ---HHHHHHHHTTCCEEEC---SSCCSSHHHHHHHHHHHHHTTCCEEECCSGGG
T ss_pred             ---HHHHHHHHCCCeEEEe---CCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhh
Confidence               1222344444 34433   442      23567778888988776665443

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.0043  Score=61.16  Aligned_cols=47  Identities=26%  Similarity=0.448  Sum_probs=42.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGA---RVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~---~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|+   +|.+++|+.++++++++++
T Consensus        30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l   80 (287)
T 3rku_A           30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTI   80 (287)
T ss_dssp             HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH
T ss_pred             hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHH
Confidence            367899999987 6899999999998887   9999999999999988776

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.52  E-value=0.003  Score=62.04  Aligned_cols=48  Identities=27%  Similarity=0.421  Sum_probs=39.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~   77 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEI   77 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            3567899999987 68999999999999999999999999988887766

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.52  E-value=0.005  Score=60.12  Aligned_cols=47  Identities=21%  Similarity=0.289  Sum_probs=42.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   71 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKL   71 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            478999999988 58999999999999999999999999888877665

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.52  E-value=0.0037  Score=60.25  Aligned_cols=48  Identities=23%  Similarity=0.404  Sum_probs=42.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   58 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATL   58 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3467899999987 68999999999999999999999999888877665

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.51  E-value=0.0055  Score=61.34  Aligned_cols=71  Identities=14%  Similarity=0.092  Sum_probs=50.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCc--------ccc-cccccccCCCCccEEEEc
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV-SGE--------ALH-FEYLHEFFPEKGMILANA  434 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~-~~~--------~~~-~~~l~~~~~~~~divIna  434 (518)
                      ...+++.|||+|.+|.+++..|++.|.+|+++ |+.++++++.+.- ...        .+. ..+.+  ....+|+||-|
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~D~vila   93 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPS--AVQGADLVLFC   93 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGG--GGTTCSEEEEC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH--HcCCCCEEEEE
Confidence            34578999999999999999999999999999 9999988887541 100        000 11222  23568999998


Q ss_pred             CCCC
Q 010101          435 SAIG  438 (518)
Q Consensus       435 tp~g  438 (518)
                      +|..
T Consensus        94 vk~~   97 (318)
T 3hwr_A           94 VKST   97 (318)
T ss_dssp             CCGG
T ss_pred             cccc
Confidence            8753

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.51  E-value=0.0039  Score=60.52  Aligned_cols=47  Identities=26%  Similarity=0.359  Sum_probs=42.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.+++++++++++
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE   51 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            56899999987 689999999999999999999999999998887764

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.51  E-value=0.0043  Score=61.46  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=43.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++.
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~   76 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLR   76 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            478999999988 689999999999999999999999999999887763

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.51  E-value=0.0028  Score=61.91  Aligned_cols=48  Identities=27%  Similarity=0.448  Sum_probs=43.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++||+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   70 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEF   70 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4578999999988 68999999999999999999999999999888776

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.51  E-value=0.0024  Score=60.51  Aligned_cols=70  Identities=10%  Similarity=-0.001  Sum_probs=49.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhcCcc--cccc---cccccCCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSR--GARVIIFNRNYERAKALADAVSGEA--LHFE---YLHEFFPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~--G~~v~i~nRt~~ka~~la~~~~~~~--~~~~---~l~~~~~~~~divInatp~  437 (518)
                      .+++++|+|+ |+.|++++..|.+.  |++|+++.|+.++.+.+..  +...  .++.   ++.. ...+.|+|||+...
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~D~~d~~~~~~-~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG--EADVFIGDITDADSINP-AFQGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC--CTTEEECCTTSHHHHHH-HHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCC--CeeEEEecCCCHHHHHH-HHcCCCEEEEeccc
Confidence            4689999996 88999999999999  7899999999887765411  1111  1222   2222 23568999998764


Q ss_pred             C
Q 010101          438 G  438 (518)
Q Consensus       438 g  438 (518)
                      .
T Consensus        80 ~   80 (253)
T 1xq6_A           80 V   80 (253)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.51  E-value=0.0045  Score=59.82  Aligned_cols=47  Identities=26%  Similarity=0.432  Sum_probs=42.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV   51 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            367899999987 68999999999999999999999999988887776

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.50  E-value=0.0038  Score=60.89  Aligned_cols=48  Identities=29%  Similarity=0.414  Sum_probs=43.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++.+
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~   72 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAF   72 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3578899999987 68999999999999999999999999998887765

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.50  E-value=0.0022  Score=68.23  Aligned_cols=112  Identities=19%  Similarity=0.208  Sum_probs=71.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-H---hcCcc-cccccccccCCCCccEEEEcCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD-A---VSGEA-LHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~-~---~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      .++.|||+|.||.+++..|++.|++|+++||+.++++++.+ .   .+... .+++++.. .+.++|+||-++|.+..  
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~-~l~~aDvVilaVp~~~~--   79 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVS-KLKKPRRIILLVKAGQA--   79 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHH-HBCSSCEEEECSCTTHH--
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHh-hccCCCEEEEeCCChHH--
Confidence            46999999999999999999999999999999999999876 2   12111 12222111 12468999999986511  


Q ss_pred             CCCCCCC--hhhhcCCCEEEEEeeCC-Cch-HHHHHHHHCCCeee
Q 010101          443 SDQSPVP--KEALKAYELVFDAVYTP-RNT-RLLREAAEVGATVV  483 (518)
Q Consensus       443 ~~~~~~~--~~~l~~~~~v~Di~Y~P-~~T-~ll~~A~~~G~~~i  483 (518)
                      .+. .+.  ...++++.+++|+.-.. ..| .+.+...+.|+.++
T Consensus        80 v~~-vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v  123 (482)
T 2pgd_A           80 VDN-FIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (482)
T ss_dssp             HHH-HHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEe
Confidence            010 011  11356678899985543 233 34444556676644

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.50  E-value=0.0015  Score=66.66  Aligned_cols=112  Identities=19%  Similarity=0.163  Sum_probs=74.3

Q ss_pred             CcEEEEEccchhHHHHHHHHH-HC-CCe-EEEEeCCHHHHHHHHHHhcC--c-ccccccccccCCCCccEEEEcCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAK-SR-GAR-VIIFNRNYERAKALADAVSG--E-ALHFEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~-~~-G~~-v~i~nRt~~ka~~la~~~~~--~-~~~~~~l~~~~~~~~divInatp~g~~  440 (518)
                      ..++.|||+|.+|+..+.+|. .. |++ +.|++|+.++++++++.++.  . ..+++++-+  ..+.|+|+.|||....
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLIN--DKDVEVVIITASNEAH  100 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHH--CTTCCEEEECSCGGGH
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhc--CCCCCEEEEcCCcHHH
Confidence            358999999999999999998 43 566 55999999999999999883  2 123444322  2358999999986543


Q ss_pred             CCCCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCee-eccHH
Q 010101          441 PNSDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATV-VSGVE  487 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~-i~G~~  487 (518)
                      .     .+....+..+.-|+  +=+|.-      -.+.+.|++.|..+ .-|..
T Consensus       101 ~-----~~~~~al~aGk~Vl--~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~  147 (357)
T 3ec7_A          101 A-----DVAVAALNANKYVF--CEKPLAVTAADCQRVIEAEQKNGKRMVQIGFM  147 (357)
T ss_dssp             H-----HHHHHHHHTTCEEE--EESSSCSSHHHHHHHHHHHHHHTSCCEEEECG
T ss_pred             H-----HHHHHHHHCCCCEE--eecCccCCHHHHHHHHHHHHHhCCeEEEEeec
Confidence            2     12233455554333  335532      34667788888866 44444

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.50  E-value=0.0029  Score=62.07  Aligned_cols=48  Identities=35%  Similarity=0.549  Sum_probs=43.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~   53 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIA   53 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            467899999988 689999999999999999999999999999988874

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.49  E-value=0.0021  Score=62.69  Aligned_cols=73  Identities=27%  Similarity=0.306  Sum_probs=53.7

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCccEE
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGMIL  431 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~div  431 (518)
                      .+|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.++...    .++.+   +...      .....|+|
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l   83 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL   83 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            4789999987 789999999999999999999999999998887765322    12211   1110      11257999


Q ss_pred             EEcCCCC
Q 010101          432 ANASAIG  438 (518)
Q Consensus       432 Inatp~g  438 (518)
                      ||+....
T Consensus        84 v~~Ag~~   90 (281)
T 3m1a_A           84 VNNAGRT   90 (281)
T ss_dssp             EECCCCE
T ss_pred             EECCCcC
Confidence            9987643

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.48  E-value=0.0052  Score=62.12  Aligned_cols=69  Identities=20%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      .|.+|+|+|+|++|.+++..++..|++|+++.++.++.+ +++++|...+- .+.+. ....+|+++++++.
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~-~~~~lGa~~v~-~~~~~-~~~~~D~vid~~g~  244 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQ-DALSMGVKHFY-TDPKQ-CKEELDFIISTIPT  244 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHH-HHHHTTCSEEE-SSGGG-CCSCEEEEEECCCS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHhcCCCeec-CCHHH-HhcCCCEEEECCCc
Confidence            478999999999999999988899999999999988875 56778865432 22222 22368999998863

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.47  E-value=0.0045  Score=60.50  Aligned_cols=49  Identities=35%  Similarity=0.512  Sum_probs=43.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .++++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++.
T Consensus        25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~   74 (276)
T 2b4q_A           25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLS   74 (276)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3477899999987 689999999999999999999999999888887764

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.48  E-value=0.00045  Score=64.76  Aligned_cols=91  Identities=14%  Similarity=0.110  Sum_probs=61.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      ..++++.|||+|.+|++++..|.+.|.+|++++|+.+ .+.+.. .+...   .+..+ ...++|+||.++|......  
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~-~g~~~---~~~~~-~~~~aDvVilav~~~~~~~--   88 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLP-RGAEV---LCYSE-AASRSDVIVLAVHREHYDF--   88 (201)
Confidence            4567899999999999999999999999999999977 444432 12221   12323 3457899999998643221  


Q ss_pred             CCCCChhhhcCCCEEEEEeeC
Q 010101          445 QSPVPKEALKAYELVFDAVYT  465 (518)
Q Consensus       445 ~~~~~~~~l~~~~~v~Di~Y~  465 (518)
                       . +....+.++.+++|+.-.
T Consensus        89 -v-~~l~~~~~~~ivI~~~~G  107 (201)
T 2yjz_A           89 -L-AELADSLKGRVLIDVSNN  107 (201)
Confidence             1 111112345678888654

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=96.46  E-value=0.0044  Score=62.59  Aligned_cols=70  Identities=21%  Similarity=0.170  Sum_probs=53.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-GARV-IIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-G~~v-~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      .++.|||+|.+|+..+.+|.+. +++| .+++|+.++++++++.++... -+++++-+  ..+.|+|+.|||...
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~--~~~~D~V~i~tp~~~   77 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFA--RDDIDGIVIGSPTST   77 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTT--CSCCCEEEECSCGGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhc--CCCCCEEEEeCCchh
Confidence            4799999999999999999887 5665 499999999999999887432 23333211  136899999998653

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.45  E-value=0.0011  Score=64.79  Aligned_cols=39  Identities=26%  Similarity=0.233  Sum_probs=35.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      .+++||.++|.|+ +|+|++++..|++.|++|.+++|+.+
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARP   46 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch
Confidence            3689999999988 58999999999999999999999754

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.45  E-value=0.0021  Score=65.19  Aligned_cols=116  Identities=14%  Similarity=0.078  Sum_probs=72.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      .+++.|||.|-+|.+++..|.+.|.+|++++|++++++.+ ...+... .+.++.-.....++|+||-|+|+.....   
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a-~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~---   83 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSA-VDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDS---   83 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHH-HHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHH---
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHH---
Confidence            3579999999999999999999999999999999987764 4455422 1222211001124699999998642110   


Q ss_pred             CCCCh-hhhcCCCEEEEEeeCCCchHHHHHHHHC--CCeeeccHHHH
Q 010101          446 SPVPK-EALKAYELVFDAVYTPRNTRLLREAAEV--GATVVSGVEMF  489 (518)
Q Consensus       446 ~~~~~-~~l~~~~~v~Di~Y~P~~T~ll~~A~~~--G~~~i~G~~ml  489 (518)
                       .+.. ..++++.+|.|+...  .+..++..++.  +.++++|..|.
T Consensus        84 -vl~~l~~~~~~~iv~Dv~Sv--k~~i~~~~~~~~~~~~~v~~HPma  127 (341)
T 3ktd_A           84 -LLDAVHTHAPNNGFTDVVSV--KTAVYDAVKARNMQHRYVGSHPMA  127 (341)
T ss_dssp             -HHHHHHHHCTTCCEEECCSC--SHHHHHHHHHTTCGGGEECEEECC
T ss_pred             -HHHHHHccCCCCEEEEcCCC--ChHHHHHHHHhCCCCcEecCCccc
Confidence             0100 113567889998654  34445555544  24455544443

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.45  E-value=0.0041  Score=59.77  Aligned_cols=75  Identities=19%  Similarity=0.189  Sum_probs=55.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc----ccccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA----LHFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~----~~~~~---l~~~------~~~~~d  429 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.++++++++...    .++.+   +...      .....|
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   82 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999988 689999999999999999999999999998888775321    12211   1110      113469


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus        83 ~lv~~Ag~~   91 (253)
T 1hxh_A           83 VLVNNAGIL   91 (253)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.44  E-value=0.0052  Score=60.05  Aligned_cols=47  Identities=21%  Similarity=0.328  Sum_probs=42.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   66 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL   66 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999987 68999999999999999999999999888877665

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.44  E-value=0.0046  Score=59.68  Aligned_cols=46  Identities=30%  Similarity=0.537  Sum_probs=41.3

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEA   49 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56889999987 68999999999999999999999999988887765

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.44  E-value=0.0022  Score=62.31  Aligned_cols=48  Identities=19%  Similarity=0.301  Sum_probs=41.1

Q ss_pred             ccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHHH-HHHHHHHhc
Q 010101          364 PIAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNYER-AKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~~k-a~~la~~~~  411 (518)
                      .+++|+++|.|+   ||.|++++..|++.|++|.+++|+.++ .++++++++
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   55 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLP   55 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSS
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcC
Confidence            357899999995   899999999999999999999999876 477766654

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.44  E-value=0.0071  Score=60.90  Aligned_cols=76  Identities=14%  Similarity=0.168  Sum_probs=54.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc-----ccc-ccccccCCCCccEEEEcCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA-----LHF-EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~-----~~~-~~l~~~~~~~~divInatp  436 (518)
                      -.++++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+.++....     ..+ .+..+ ...++|+||.+.+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~-a~~~aDiVvi~ag   85 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYS-DAKDADLVVITAG   85 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGG-GGTTCSEEEECCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHH-HhcCCCEEEECCC
Confidence            346799999999999999999998886  89999999999988776664211     111 11122 3567999999876


Q ss_pred             CCCCC
Q 010101          437 IGMEP  441 (518)
Q Consensus       437 ~g~~~  441 (518)
                      ..-.|
T Consensus        86 ~~~kp   90 (326)
T 3vku_A           86 APQKP   90 (326)
T ss_dssp             CC---
T ss_pred             CCCCC
Confidence            54333

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.44  E-value=0.0045  Score=59.07  Aligned_cols=46  Identities=24%  Similarity=0.375  Sum_probs=41.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|.+++|+.++.+++.+.+
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~   49 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSM   49 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56899999987 68999999999999999999999999988887766

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.43  E-value=0.0056  Score=61.27  Aligned_cols=74  Identities=12%  Similarity=0.153  Sum_probs=53.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC--------ccccc-ccccccCCCCccEEEEcCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSG--------EALHF-EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~--------~~~~~-~~l~~~~~~~~divInatp  436 (518)
                      ..++.|||+|.+|.+++..|+..|. +|++++|+.++++..+..+..        ..+.. .++ + ...++|+||.|++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~-a~~~aDiVi~avg   81 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-A-DISGSDVVIITAS   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-G-GGTTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-H-HhCCCCEEEEeCC
Confidence            3589999999999999999999998 999999998887765322210        11111 233 2 3567999999997


Q ss_pred             CCCCCC
Q 010101          437 IGMEPN  442 (518)
Q Consensus       437 ~g~~~~  442 (518)
                      .+..|.
T Consensus        82 ~p~~~g   87 (317)
T 2ewd_A           82 IPGRPK   87 (317)
T ss_dssp             CSSCCS
T ss_pred             CCCCCC
Confidence            665543

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.43  E-value=0.0077  Score=60.66  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=53.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc------cccc-ccccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE------ALHF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~------~~~~-~~l~~~~~~~~divInatp~  437 (518)
                      ..++.|+|+|.+|.++++.|+..|.  +|++++++.++++..+.++...      .+.+ .+..+ ...++|+||.+.+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~-a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYE-DCKDADIVCICAGA   83 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGG-GGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHH-HhCCCCEEEEeccc
Confidence            4689999999999999999998886  8999999999988866555311      1111 11112 35679999998765


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      ...|
T Consensus        84 p~kp   87 (326)
T 3pqe_A           84 NQKP   87 (326)
T ss_dssp             CCCT
T ss_pred             CCCC
Confidence            4333

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.43  E-value=0.005  Score=60.47  Aligned_cols=48  Identities=25%  Similarity=0.400  Sum_probs=42.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|.++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++.
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~   73 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIV   73 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            356899999987 689999999999999999999999999999988874

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.42  E-value=0.0053  Score=59.79  Aligned_cols=48  Identities=29%  Similarity=0.515  Sum_probs=43.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++++.
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   54 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP   54 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            467899999987 689999999999999999999999999988887754

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.42  E-value=0.0056  Score=58.68  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=41.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l   57 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDL   57 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999987 78999999999999999999999999888777665

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.42  E-value=0.0049  Score=62.91  Aligned_cols=71  Identities=17%  Similarity=0.208  Sum_probs=54.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccc---cccccCCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFE---YLHEFFPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~---~l~~~~~~~~divInatp~  437 (518)
                      .|++|+|+|+|++|.+++..++..|++|+++.|+.++.+.+.+.++... ++..   .+.+ ....+|++|++++.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~-~~~~~D~vid~~g~  261 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQA-AAGTLDGIIDTVSA  261 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHH-TTTCEEEEEECCSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHH-hhCCCCEEEECCCc
Confidence            5789999999999999999999999999999999998877666777543 2222   1222 22468999999864

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.41  E-value=0.0033  Score=62.20  Aligned_cols=49  Identities=18%  Similarity=0.310  Sum_probs=44.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++++++.
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~   86 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELG   86 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            4578999999988 689999999999999999999999999999888774

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.41  E-value=0.0042  Score=61.05  Aligned_cols=48  Identities=17%  Similarity=0.268  Sum_probs=41.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++.
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~   57 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLK   57 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            457899999998 789999999999999999999999999888877763

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=96.41  E-value=0.0022  Score=65.84  Aligned_cols=112  Identities=15%  Similarity=0.121  Sum_probs=73.4

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSR--GAR-VIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~--G~~-v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      ..||.|+|+| .|+.-+.++.+.  +++ +-|++|+.++++++|+++|...  +.++++ .+.+.|+++-+||.......
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~--~~~~~~-l~~~~D~v~i~~p~~~h~~~   82 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPL--YTSPEQ-ITGMPDIACIVVRSTVAGGA   82 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCE--ESSGGG-CCSCCSEEEECCC--CTTSH
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCE--ECCHHH-HhcCCCEEEEECCCcccchh
Confidence            5689999998 688766666655  465 5699999999999999998653  334434 34568999989986643210


Q ss_pred             CCCCCChhhhcCCC-EEEEEeeCCC----chHHHHHHHHCCCeeeccH
Q 010101          444 DQSPVPKEALKAYE-LVFDAVYTPR----NTRLLREAAEVGATVVSGV  486 (518)
Q Consensus       444 ~~~~~~~~~l~~~~-~v~Di~Y~P~----~T~ll~~A~~~G~~~i~G~  486 (518)
                       -.++....|..+. ++++   +|.    -..+++.|+++|+.+.-|.
T Consensus        83 -~~~~a~~al~aGkhVl~E---KPl~~~ea~~l~~~A~~~g~~~~v~~  126 (372)
T 4gmf_A           83 -GTQLARHFLARGVHVIQE---HPLHPDDISSLQTLAQEQGCCYWINT  126 (372)
T ss_dssp             -HHHHHHHHHHTTCEEEEE---SCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             -HHHHHHHHHHcCCcEEEe---cCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence             0112334454443 3333   453    3578888999999876664

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.40  E-value=0.0025  Score=63.81  Aligned_cols=69  Identities=20%  Similarity=0.284  Sum_probs=50.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeC--CHHHHHHHHHHhc-Cc------cccc-c--cccccCCCCccEEEEcCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNR--NYERAKALADAVS-GE------ALHF-E--YLHEFFPEKGMILANASA  436 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nR--t~~ka~~la~~~~-~~------~~~~-~--~l~~~~~~~~divInatp  436 (518)
                      ++.|||+|.+|.+++..|.+.|.+|++++|  +.++++.+.+... ..      .+.. .  ++.+ ...++|+||.|+|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~D~vi~~v~   80 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEK-CLENAEVVLLGVS   80 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHH-HHTTCSEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHH-HHhcCCEEEEcCC
Confidence            689999999999999999999999999999  9999888765421 00      0011 1  2222 2456899999987


Q ss_pred             CC
Q 010101          437 IG  438 (518)
Q Consensus       437 ~g  438 (518)
                      ..
T Consensus        81 ~~   82 (335)
T 1txg_A           81 TD   82 (335)
T ss_dssp             GG
T ss_pred             hH
Confidence            53

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.40  E-value=0.0049  Score=58.87  Aligned_cols=73  Identities=26%  Similarity=0.246  Sum_probs=47.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--cccc------cccc--CCCCccEEEE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFEY------LHEF--FPEKGMILAN  433 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~~------l~~~--~~~~~divIn  433 (518)
                      +++|+++|.|+ ||.|++++..|++ |++|++++|+.++.+++++..+...+  ++.+      ..+.  .....|++||
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~   81 (245)
T 3e9n_A            3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH   81 (245)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence            45789999988 6899999999988 88999999999998888762221111  1110      0000  1246799999


Q ss_pred             cCCCC
Q 010101          434 ASAIG  438 (518)
Q Consensus       434 atp~g  438 (518)
                      +....
T Consensus        82 ~Ag~~   86 (245)
T 3e9n_A           82 AAAVA   86 (245)
T ss_dssp             CC---
T ss_pred             CCCcC
Confidence            87643

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.40  E-value=0.005  Score=60.28  Aligned_cols=47  Identities=23%  Similarity=0.265  Sum_probs=40.7

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      +++|++||.|+ ||.|++++..|++.|++|++++|+.++++++++++.
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~   69 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLR   69 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            46899999987 689999999999999999999999999999888774

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.40  E-value=0.0053  Score=61.41  Aligned_cols=47  Identities=19%  Similarity=0.306  Sum_probs=42.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++.+|++||.|+ ||.|++++..|++.|++|.+++|+.++++++++.+
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l   52 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL   52 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            467899999988 78999999999999999999999999998887765

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.38  E-value=0.0057  Score=59.62  Aligned_cols=47  Identities=26%  Similarity=0.376  Sum_probs=42.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++++
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   76 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAEC   76 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHH
Confidence            467899999987 78999999999999999999999999988887665

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=96.38  E-value=0.05  Score=50.75  Aligned_cols=147  Identities=12%  Similarity=0.069  Sum_probs=86.9

Q ss_pred             CceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCCCCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHHHH
Q 010101            8 SLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQ   87 (518)
Q Consensus         8 ~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~   87 (518)
                      ...|+.+|...+.+++.+.++.+.+.|+|++|+|.-..  +..+.+..+.+..+.|+++-.     |+.  .+ . +   
T Consensus         6 ~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~--~~~~~i~~i~~~~~~~l~vg~-----g~~--~~-~-~---   71 (212)
T 2v82_A            6 KLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSP--QWEQSIPAIVDAYGDKALIGA-----GTV--LK-P-E---   71 (212)
T ss_dssp             SSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTST--THHHHHHHHHHHHTTTSEEEE-----ECC--CS-H-H---
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHhCCCCeEEEe-----ccc--cC-H-H---
Confidence            34577889999999999999998889999999986432  222345555554567877622     222  22 2 2   


Q ss_pred             HHHHHhhcCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccCCccc
Q 010101           88 VLRRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITD  167 (518)
Q Consensus        88 ll~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D  167 (518)
                      .++.+++.|+++|=+... ..+..+.   .+..+.+++++.|+       .+|+    .++...|+|++++  .+.+...
T Consensus        72 ~i~~a~~~Gad~V~~~~~-~~~~~~~---~~~~g~~~~~g~~t-------~~e~----~~a~~~G~d~v~v--~~t~~~g  134 (212)
T 2v82_A           72 QVDALARMGCQLIVTPNI-HSEVIRR---AVGYGMTVCPGCAT-------ATEA----FTALEAGAQALKI--FPSSAFG  134 (212)
T ss_dssp             HHHHHHHTTCCEEECSSC-CHHHHHH---HHHTTCEEECEECS-------HHHH----HHHHHTTCSEEEE--TTHHHHC
T ss_pred             HHHHHHHcCCCEEEeCCC-CHHHHHH---HHHcCCCEEeecCC-------HHHH----HHHHHCCCCEEEE--ecCCCCC
Confidence            356778889999853221 1122222   23346677777553       2343    4456789999996  2222223


Q ss_pred             HHHHHHHhccCC--CCEEEE
Q 010101          168 LAPVFEMLTHCQ--VPLIAL  185 (518)
Q Consensus       168 ~~~l~~~~~~~~--~p~i~~  185 (518)
                      ...+.++....+  .|+++.
T Consensus       135 ~~~~~~l~~~~~~~ipvia~  154 (212)
T 2v82_A          135 PQYIKALKAVLPSDIAVFAV  154 (212)
T ss_dssp             HHHHHHHHTTSCTTCEEEEE
T ss_pred             HHHHHHHHHhccCCCeEEEe
Confidence            333333333332  566554

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.38  E-value=0.0055  Score=59.09  Aligned_cols=48  Identities=19%  Similarity=0.172  Sum_probs=42.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   58 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW   58 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4578899999987 78999999999999999999999999888877665

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.38  E-value=0.0072  Score=60.54  Aligned_cols=75  Identities=16%  Similarity=0.236  Sum_probs=54.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc------cccc-ccccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE------ALHF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~------~~~~-~~l~~~~~~~~divInatp~  437 (518)
                      ..++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+..+...      ...+ .+..+ ...++|+||.|+++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~-al~~aDvViia~~~   84 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYD-DCRDADLVVICAGA   84 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGG-GTTTCSEEEECCSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHH-HhCCCCEEEEcCCC
Confidence            3689999999999999999988774  8999999998877665544311      0111 11122 46789999999988


Q ss_pred             CCCCC
Q 010101          438 GMEPN  442 (518)
Q Consensus       438 g~~~~  442 (518)
                      +..|.
T Consensus        85 ~~~~g   89 (316)
T 1ldn_A           85 NQKPG   89 (316)
T ss_dssp             CCCTT
T ss_pred             CCCCC
Confidence            77664

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.37  E-value=0.01  Score=56.87  Aligned_cols=46  Identities=22%  Similarity=0.299  Sum_probs=37.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCe-EEEEeCCH--HHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGAR-VIIFNRNY--ERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~-v~i~nRt~--~ka~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|++.|++ |.+++|+.  +..+++.+..
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~   52 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAIN   52 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhC
Confidence            56899999987 78999999999999995 99999986  4556665543

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.37  E-value=0.0048  Score=60.30  Aligned_cols=46  Identities=28%  Similarity=0.437  Sum_probs=41.6

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQII   50 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56899999987 68999999999999999999999999988887765

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.37  E-value=0.0068  Score=58.93  Aligned_cols=48  Identities=21%  Similarity=0.419  Sum_probs=42.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+.+|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l   75 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC   75 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHH
Confidence            4578999999987 68999999999999999999999999888877665

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.37  E-value=0.011  Score=57.25  Aligned_cols=74  Identities=14%  Similarity=0.141  Sum_probs=50.5

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCc-c--ccccc---ccc------cCCC
Q 010101          365 IAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNY---ERAKALADAVSGE-A--LHFEY---LHE------FFPE  426 (518)
Q Consensus       365 l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~---~ka~~la~~~~~~-~--~~~~~---l~~------~~~~  426 (518)
                      +++|+++|.|+   ||.|++++..|++.|++|++++|+.   +.++++.+..+.. .  .++.+   +..      ....
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            56899999998   5999999999999999999999987   4455555443321 1  11111   110      0223


Q ss_pred             CccEEEEcCCCC
Q 010101          427 KGMILANASAIG  438 (518)
Q Consensus       427 ~~divInatp~g  438 (518)
                      ..|++||+....
T Consensus        87 ~iD~lv~~Ag~~   98 (265)
T 1qsg_A           87 KFDGFVHSIGFA   98 (265)
T ss_dssp             SEEEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            679999987643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.35  E-value=0.0034  Score=66.33  Aligned_cols=70  Identities=21%  Similarity=0.329  Sum_probs=57.6

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-----ccccccccCCCCccEEEEcCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-----HFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-----~~~~l~~~~~~~~divInatp  436 (518)
                      .-+++|+|+|..|+.++..|...|.+|+++++++++.+.+.+.++...+     +.+-|.+....++|++|-+|+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~   77 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTN   77 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCS
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcC
Confidence            3589999999999999999999999999999999999999998875332     233344445788999998885

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.35  E-value=0.0031  Score=61.71  Aligned_cols=47  Identities=26%  Similarity=0.427  Sum_probs=42.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~   77 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRI   77 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            478999999987 68999999999999999999999999888887766

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.35  E-value=0.0092  Score=59.40  Aligned_cols=71  Identities=21%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc-------cccccccccCCCCccEEEEcCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA-------LHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~-------~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      ++.|+|+|.+|.++++.|+..|.  +|++++++.++++..+.++....       +...+. + ...++|+||.+++...
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~-a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH-S-ELADAQVVILTAGANQ   79 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG-G-GGTTCSEEEECC----
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH-H-HhCCCCEEEEcCCCCC
Confidence            68999999999999999999997  89999999998887766654211       111222 2 3567999999997654


Q ss_pred             CC
Q 010101          440 EP  441 (518)
Q Consensus       440 ~~  441 (518)
                      .|
T Consensus        80 ~~   81 (304)
T 2v6b_A           80 KP   81 (304)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.34  E-value=0.0043  Score=62.39  Aligned_cols=112  Identities=14%  Similarity=0.084  Sum_probs=76.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC---C-eEEEEeCCHHHHHHHHHHhcCc--ccccccccccCCCCccEEEEcCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRG---A-RVIIFNRNYERAKALADAVSGE--ALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G---~-~v~i~nRt~~ka~~la~~~~~~--~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      -++.|||+|.+|+..+.+|.+.+   + -+.|++|+.++++++++.++..  +-+++++-+  ..+.|+|+.|||.....
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~--~~~vD~V~i~tp~~~H~   80 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAK--DPNVEVAYVGTQHPQHK   80 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHH--CTTCCEEEECCCGGGHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEECCCcHHHH
Confidence            37899999999999999888664   3 3678999999999999999853  224444322  24689999999865432


Q ss_pred             CCCCCCCChhhhcCCC-EEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHH
Q 010101          442 NSDQSPVPKEALKAYE-LVFDAVYTPRN------TRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~-~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml  489 (518)
                           ++....+..+. ++++   +|.-      ..+++.|+++|..+.-|..+-
T Consensus        81 -----~~~~~al~~GkhVl~E---KP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r  127 (334)
T 3ohs_X           81 -----AAVMLCLAAGKAVLCE---KPMGVNAAEVREMVTEARSRGLFLMEAIWTR  127 (334)
T ss_dssp             -----HHHHHHHHTTCEEEEE---SSSSSSHHHHHHHHHHHHHTTCCEEEECGGG
T ss_pred             -----HHHHHHHhcCCEEEEE---CCCCCCHHHHHHHHHHHHHhCCEEEEEEhHh
Confidence                 12233455443 4444   4532      457778888998877665543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.34  E-value=0.0011  Score=60.88  Aligned_cols=69  Identities=14%  Similarity=0.065  Sum_probs=47.2

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc--cccc---cccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA--LHFE---YLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~--~~~~---~l~~~~~~~~divInatp~  437 (518)
                      +++++|+|+ |+.|++++..|.+.|++|+++.|+.++.+.+. .-+...  .++.   ++.. ...++|+||++.+.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~~~~~~~~-~~~~~d~vi~~a~~   77 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG-PRPAHVVVGDVLQAADVDK-TVAGQDAVIVLLGT   77 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS-CCCSEEEESCTTSHHHHHH-HHTTCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccccc-CCceEEEEecCCCHHHHHH-HHcCCCEEEECccC
Confidence            368999998 89999999999999999999999987643221 001111  1121   2222 24568999998864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.33  E-value=0.0031  Score=65.94  Aligned_cols=100  Identities=13%  Similarity=0.128  Sum_probs=66.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--------------ccccc-ccccccCCCCccEE
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG--------------EALHF-EYLHEFFPEKGMIL  431 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~--------------~~~~~-~~l~~~~~~~~div  431 (518)
                      -.++.|||+|-+|.+++..|++ |.+|++++|++++++++.+....              ..+.+ .++.+ ...++|+|
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~e-a~~~aDvV  113 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHD-AYRNADYV  113 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH-HHTTCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHH-HHhCCCEE
Confidence            3589999999999999999998 99999999999999988753210              00111 12222 34578999


Q ss_pred             EEcCCCCCCCCCC---CCCCC------hhhhcCCCEEEEEeeCCCch
Q 010101          432 ANASAIGMEPNSD---QSPVP------KEALKAYELVFDAVYTPRNT  469 (518)
Q Consensus       432 Inatp~g~~~~~~---~~~~~------~~~l~~~~~v~Di~Y~P~~T  469 (518)
                      |-|+|....+...   -..+.      .. ++++.+|+|....|..|
T Consensus       114 iiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgt  159 (432)
T 3pid_A          114 IIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGF  159 (432)
T ss_dssp             EECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTH
T ss_pred             EEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHH
Confidence            9999865322110   00011      12 56788898887776544

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.33  E-value=0.0047  Score=60.68  Aligned_cols=39  Identities=28%  Similarity=0.458  Sum_probs=35.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+.+
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAE   44 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            3578999999987 68999999999999999999999976

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.33  E-value=0.0076  Score=64.04  Aligned_cols=42  Identities=24%  Similarity=0.415  Sum_probs=38.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA  409 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~  409 (518)
                      ++|.|||+|-||.+++..|++.|++|++++|++++++++.+.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~   47 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDG   47 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Confidence            579999999999999999999999999999999998887654

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.33  E-value=0.0054  Score=61.62  Aligned_cols=71  Identities=20%  Similarity=0.337  Sum_probs=54.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-ccccc------ccccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEY------LHEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~------l~~~~~~~~divInatp  436 (518)
                      .|++++|+|+ ||+|.+++..++..|++|+++.|+.++.+.++++++... ++..+      +.+.....+|++||++.
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  227 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG  227 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence            5789999999 999999999999999999999999999888778887642 22211      11111235899999875

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.32  E-value=0.0053  Score=60.75  Aligned_cols=47  Identities=30%  Similarity=0.475  Sum_probs=42.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l   70 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI   70 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            367899999987 68999999999999999999999999988887665

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.32  E-value=0.0056  Score=58.52  Aligned_cols=46  Identities=33%  Similarity=0.599  Sum_probs=40.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-NYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-t~~ka~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|+++.| +.++++++++++
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   49 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEI   49 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            45789999987 68999999999999999999999 888888877665

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.31  E-value=0.0036  Score=59.38  Aligned_cols=44  Identities=30%  Similarity=0.462  Sum_probs=38.4

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIF-NRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~-nRt~~ka~~la~~~  410 (518)
                      +|+++|.|+ ||.|++++..|++.|++|+++ +|+.++++++.+++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~   46 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEA   46 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            368999987 689999999999999999887 99999988877655

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.30  E-value=0.0085  Score=58.99  Aligned_cols=48  Identities=29%  Similarity=0.509  Sum_probs=42.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++++
T Consensus        14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l   62 (303)
T 1yxm_A           14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADEL   62 (303)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3577899999987 68999999999999999999999999988887765

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.30  E-value=0.006  Score=58.58  Aligned_cols=47  Identities=21%  Similarity=0.343  Sum_probs=41.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLL   51 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence            467899999987 68999999999999999999999999988887655

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.30  E-value=0.0085  Score=58.31  Aligned_cols=74  Identities=16%  Similarity=0.192  Sum_probs=50.7

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhcC-cc--ccccc---cccc------CCC
Q 010101          365 IAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNYE---RAKALADAVSG-EA--LHFEY---LHEF------FPE  426 (518)
Q Consensus       365 l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~~---ka~~la~~~~~-~~--~~~~~---l~~~------~~~  426 (518)
                      +++|+++|.|+   ||.|++++..|++.|++|++++|+.+   .++++.+..+. ..  .++.+   +...      ...
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56899999998   69999999999999999999999875   45555554432 11  11111   1110      123


Q ss_pred             CccEEEEcCCCC
Q 010101          427 KGMILANASAIG  438 (518)
Q Consensus       427 ~~divInatp~g  438 (518)
                      ..|++||+....
T Consensus        84 ~id~lv~nAg~~   95 (275)
T 2pd4_A           84 SLDFIVHSVAFA   95 (275)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CCCEEEECCccC
Confidence            579999987654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.30  E-value=0.0069  Score=58.57  Aligned_cols=46  Identities=33%  Similarity=0.494  Sum_probs=41.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++.+
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   51 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAAL   51 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            56889999987 78999999999999999999999999888776665

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.29  E-value=0.016  Score=62.11  Aligned_cols=98  Identities=15%  Similarity=0.134  Sum_probs=59.7

Q ss_pred             cCCcEEEEEccchhHHH-HHHHHHHCCCeEEEEeCCH--HHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          365 IAGKIFVLVGAGGAGRA-LAFGAKSRGARVIIFNRNY--ERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       365 l~~k~vlvlGaGg~ara-ia~~L~~~G~~v~i~nRt~--~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ++.+++.|||.||+|.+ +|..|.++|++|++.++..  +..+.|.+ .+.....-.+... ...++|+||-+  +|   
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~-~gi~~~~G~~~~~-~~~~~d~vV~S--pg---   89 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQ-AGVTIEEGYLIAH-LQPAPDLVVVG--NA---   89 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHH-TTCEEEESCCGGG-GCSCCSEEEEC--TT---
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHH-CCCEEECCCCHHH-cCCCCCEEEEC--CC---
Confidence            56799999999999997 5777889999999999863  22333322 2221100000000 01123444311  11   


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHH
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQ  492 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Q  492 (518)
                                             -|...|.+++|+++|++++...++|.++
T Consensus        90 -----------------------i~~~~p~l~~a~~~gi~v~~~~e~l~~~  117 (524)
T 3hn7_A           90 -----------------------MKRGMDVIEYMLDTGLRYTSGPQFLSEQ  117 (524)
T ss_dssp             -----------------------CCTTSHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred             -----------------------cCCCCHHHHHHHHCCCcEEEHHHHHHHH
Confidence                                   1345778899999999999999987754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.28  E-value=0.0094  Score=59.35  Aligned_cols=67  Identities=15%  Similarity=0.075  Sum_probs=49.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccc-----c--cc-cccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF-----E--YL-HEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~-----~--~l-~~~~~~~~divInatp~  437 (518)
                      .+++|+|+|.+|.+++..|. .|.+|++++|+.++++++.+. +......     .  .. .+ ....+|+||-|++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~-G~~~~~~~~~~~~~~~~~~~-~~~~~D~vilavK~   77 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSE-GIRLYKGGEEFRADCSADTS-INSDFDLLVVTVKQ   77 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-CEEEEETTEEEEECCEEESS-CCSCCSEEEECCCG
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhC-CceEecCCCeeccccccccc-ccCCCCEEEEEeCH
Confidence            57999999999999999999 888999999999988888653 3211000     0  00 11 34568999999874

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.28  E-value=0.0059  Score=57.98  Aligned_cols=47  Identities=40%  Similarity=0.584  Sum_probs=41.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+
T Consensus         4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (248)
T 2pnf_A            4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEI   51 (248)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence            467899999987 78999999999999999999999999888776654

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.28  E-value=0.0071  Score=59.44  Aligned_cols=48  Identities=27%  Similarity=0.458  Sum_probs=42.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++++++|.|+ ||.|++++..|++.|++|++++|+.++.+++++++
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l   70 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI   70 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3578899999987 68999999999999999999999999888777665

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.27  E-value=0.01  Score=59.70  Aligned_cols=73  Identities=21%  Similarity=0.220  Sum_probs=54.4

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCc------cccc---ccccccCCCCccEEEEcCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGE------ALHF---EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~------~~~~---~~l~~~~~~~~divInatp  436 (518)
                      ..++.|+|+|.+|.++++.|+..|. +|.++++++++++..+.++...      ...+   .+. + ...++|+||.+.+
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~-~-a~~~aDvVIi~ag   82 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDY-K-DLENSDVVIVTAG   82 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-G-GGTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCH-H-HHCCCCEEEEcCC
Confidence            4689999999999999999999888 9999999999887766555421      1111   122 2 4577999999986


Q ss_pred             CCCCC
Q 010101          437 IGMEP  441 (518)
Q Consensus       437 ~g~~~  441 (518)
                      ....|
T Consensus        83 ~p~k~   87 (321)
T 3p7m_A           83 VPRKP   87 (321)
T ss_dssp             CCCCT
T ss_pred             cCCCC
Confidence            54444

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.27  E-value=0.0021  Score=60.93  Aligned_cols=71  Identities=17%  Similarity=0.155  Sum_probs=49.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc--ccc---ccccccCCCCccEEEEcCC
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA--LHF---EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~--~~~---~~l~~~~~~~~divInatp  436 (518)
                      +.+++++|.|+ |+.|++++..|.+.|+  +|++++|+.++.+.+... +...  .++   +++.. ...+.|+|||+..
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~-~~~~~~~D~~d~~~~~~-~~~~~d~vi~~ag   93 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYK-NVNQEVVDFEKLDDYAS-AFQGHDVGFCCLG   93 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGG-GCEEEECCGGGGGGGGG-GGSSCSEEEECCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccC-CceEEecCcCCHHHHHH-HhcCCCEEEECCC
Confidence            45789999996 8899999999999999  999999987654332111 1111  122   22333 3456899999876


Q ss_pred             C
Q 010101          437 I  437 (518)
Q Consensus       437 ~  437 (518)
                      .
T Consensus        94 ~   94 (242)
T 2bka_A           94 T   94 (242)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.26  E-value=0.006  Score=59.71  Aligned_cols=47  Identities=28%  Similarity=0.488  Sum_probs=42.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++++++
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   72 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHC   72 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            467899999998 78999999999999999999999999988877654

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.26  E-value=0.0035  Score=60.29  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=33.6

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.+
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            46789999988 78999999999999999999999865

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.25  E-value=0.0059  Score=58.80  Aligned_cols=47  Identities=28%  Similarity=0.390  Sum_probs=42.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKS---RGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~---~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++   .|++|++++|+.++++++++++
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l   53 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL   53 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHH
Confidence            467899999987 6899999999998   8999999999999988887766

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=96.24  E-value=0.2  Score=51.96  Aligned_cols=130  Identities=20%  Similarity=0.182  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcc-cCCcEEEEEccchhHHHHHHHHHH-CCCeEEEEeCC-----------HHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSP-IAGKIFVLVGAGGAGRALAFGAKS-RGARVIIFNRN-----------YERAK  404 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~-l~~k~vlvlGaGg~araia~~L~~-~G~~v~i~nRt-----------~~ka~  404 (518)
                      +.|.+.+++..++.. |        .+ ++|+++.|+|.|.+|+.++..|.. .|++|..+++.           .+...
T Consensus       191 g~Gv~~~~~~~~~~~-G--------~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~~~gvdl~~L~  261 (419)
T 1gtm_A          191 ARGASYTIREAAKVL-G--------WDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVL  261 (419)
T ss_dssp             HHHHHHHHHHHHHHT-T--------CSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHH
T ss_pred             hhHHHHHHHHHHHHh-C--------CcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccCccCCCHHHHH
Confidence            567777777656542 2        45 889999999999999999999999 99988777543           45555


Q ss_pred             HHHHHhcC-------cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHH-HHHHH
Q 010101          405 ALADAVSG-------EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRL-LREAA  476 (518)
Q Consensus       405 ~la~~~~~-------~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~l-l~~A~  476 (518)
                      ++++....       ..++-+++..   .++|++|||..-+.   +++..  .+.|+ ...+....-.|. |+- -...+
T Consensus       262 ~~~d~~~~l~~l~~t~~i~~~~l~~---mk~dilIn~ArG~~---Vde~a--~~aL~-~~~I~~aAneP~-t~~a~~ll~  331 (419)
T 1gtm_A          262 KWKNEHGSVKDFPGATNITNEELLE---LEVDVLAPAAIEEV---ITKKN--ADNIK-AKIVAEVANGPV-TPEADEILF  331 (419)
T ss_dssp             HHHHHHSSSTTCTTSEEECHHHHHH---SCCSEEEECSCSCC---BCTTG--GGGCC-CSEEECCSSSCB-CHHHHHHHH
T ss_pred             HHHHhcCEeecCccCeeeCHHHHHh---CCCCEEEECCCccc---CCHHH--HHHhc-CCEEEEeeCCCC-CcchHHHHh
Confidence            55544221       1111112222   24589999985432   23322  23343 356667664453 332 23445


Q ss_pred             HCCCeeeccH
Q 010101          477 EVGATVVSGV  486 (518)
Q Consensus       477 ~~G~~~i~G~  486 (518)
                      ..|+.+.+..
T Consensus       332 ~~~V~itPhi  341 (419)
T 1gtm_A          332 EKGILQIPDF  341 (419)
T ss_dssp             HTTCEEECHH
T ss_pred             cCCEEEECch
Confidence            7888888877

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.23  E-value=0.0054  Score=62.53  Aligned_cols=70  Identities=14%  Similarity=0.132  Sum_probs=52.0

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCccccccc-cccc---CCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY---ERAKALADAVSGEALHFEY-LHEF---FPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~---~ka~~la~~~~~~~~~~~~-l~~~---~~~~~divInatp~  437 (518)
                      +|++|+|+|+|++|.+++..++..|++|++++|+.   ++. +++++++...++ .+ +.+.   ....+|++|++++.
T Consensus       180 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~-~~~~~~ga~~v~-~~~~~~~~~~~~~~~d~vid~~g~  256 (366)
T 2cdc_A          180 NCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQ-TVIEETKTNYYN-SSNGYDKLKDSVGKFDVIIDATGA  256 (366)
T ss_dssp             TTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHH-HHHHHHTCEEEE-CTTCSHHHHHHHCCEEEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHH-HHHHHhCCceec-hHHHHHHHHHhCCCCCEEEECCCC
Confidence            38999999999999999999999999999999998   776 556677764332 11 1000   01358999999863

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.23  E-value=0.0035  Score=65.08  Aligned_cols=105  Identities=15%  Similarity=0.173  Sum_probs=67.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS-GEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~-~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..+.||++.|||.|.+|+.++..|...|.+|+.++|+....      .+ ...  ..++.+ .+.++|+|+.++|..-  
T Consensus       141 ~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------~~~~~~--~~~l~e-ll~~aDvV~l~~P~t~--  209 (404)
T 1sc6_A          141 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP------LGNATQ--VQHLSD-LLNMSDVVSLHVPENP--  209 (404)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC------CTTCEE--CSCHHH-HHHHCSEEEECCCSST--
T ss_pred             cccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc------cCCcee--cCCHHH-HHhcCCEEEEccCCCh--
Confidence            46889999999999999999999999999999999975431      11 111  112222 2346799998888642  


Q ss_pred             CCCCCCCChh---hhcCCCEEEEEeeCCC-chHHHHHHHHCC
Q 010101          442 NSDQSPVPKE---ALKAYELVFDAVYTPR-NTRLLREAAEVG  479 (518)
Q Consensus       442 ~~~~~~~~~~---~l~~~~~v~Di~Y~P~-~T~ll~~A~~~G  479 (518)
                      . ....+..+   .++++.+++|+.-.+. .+.-+.+|-+.|
T Consensus       210 ~-t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g  250 (404)
T 1sc6_A          210 S-TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASK  250 (404)
T ss_dssp             T-TTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred             H-HHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcC
Confidence            1 11234433   3467777777776543 444444444444

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.23  E-value=0.011  Score=57.88  Aligned_cols=74  Identities=14%  Similarity=0.162  Sum_probs=50.5

Q ss_pred             cCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhcC-cc--ccccc---cccc------CCC
Q 010101          365 IAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNYE---RAKALADAVSG-EA--LHFEY---LHEF------FPE  426 (518)
Q Consensus       365 l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~~---ka~~la~~~~~-~~--~~~~~---l~~~------~~~  426 (518)
                      +++|+++|.|+   ||.|++++..|++.|++|++++|+.+   .++++.+..+. ..  .++.+   +...      ...
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            67899999998   59999999999999999999999875   44455444332 11  11111   1110      123


Q ss_pred             CccEEEEcCCCC
Q 010101          427 KGMILANASAIG  438 (518)
Q Consensus       427 ~~divInatp~g  438 (518)
                      ..|++||+....
T Consensus        99 ~iD~lv~~Ag~~  110 (285)
T 2p91_A           99 SLDIIVHSIAYA  110 (285)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            579999987653

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.22  E-value=0.013  Score=59.03  Aligned_cols=72  Identities=10%  Similarity=0.118  Sum_probs=54.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc--c-----c-ccccccccCCCCccEEEEc
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE--A-----L-HFEYLHEFFPEKGMILANA  434 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~--~-----~-~~~~l~~~~~~~~divIna  434 (518)
                      ...+++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+.++...  .     + ...+.+  ...++|+||.+
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~--~~~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS--VTANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG--GGTTEEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH--HhCCCCEEEEc
Confidence            346799999999999999999999886  8999999999998877666421  0     0 011222  35779999987


Q ss_pred             CCCC
Q 010101          435 SAIG  438 (518)
Q Consensus       435 tp~g  438 (518)
                      ....
T Consensus        95 aG~~   98 (331)
T 4aj2_A           95 AGAR   98 (331)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            6543

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.21  E-value=0.013  Score=61.75  Aligned_cols=38  Identities=26%  Similarity=0.443  Sum_probs=35.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKA  405 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~  405 (518)
                      ++|.|||+|-||.+++..|++.|++|++++|+++++.+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~   92 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQ   92 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHH
Confidence            68999999999999999999999999999999996543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.21  E-value=0.011  Score=59.49  Aligned_cols=74  Identities=16%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------c-ccc-cccccccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSG-------E-ALH-FEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~-------~-~~~-~~~l~~~~~~~~divInat  435 (518)
                      +..++.|+|+|.+|.++++.|+..|. +|++++++.++++..+.++..       . .+. ..+. + ...++|+||.+.
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~-a~~~aDiVIiaa   83 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-A-AIEGADVVIVTA   83 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-G-GGTTCSEEEECC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-H-HHCCCCEEEEcc
Confidence            45789999999999999999999998 999999999888755444321       1 111 1233 2 457799999998


Q ss_pred             CCCCCC
Q 010101          436 AIGMEP  441 (518)
Q Consensus       436 p~g~~~  441 (518)
                      +....|
T Consensus        84 g~p~k~   89 (324)
T 3gvi_A           84 GVPRKP   89 (324)
T ss_dssp             SCCCC-
T ss_pred             CcCCCC
Confidence            654444

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.20  E-value=0.0012  Score=62.00  Aligned_cols=70  Identities=27%  Similarity=0.240  Sum_probs=47.8

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccc---cccccCCCCccEEEEcCCCC
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE---YLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~---~l~~~~~~~~divInatp~g  438 (518)
                      ++++|+|+ |+.|++++..|.+.|++|+++.|+.++.+.+...+.....++.   ++.. ...++|+||++.+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCE-VCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHH-HHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHH-HhcCCCEEEEeCcCC
Confidence            68999996 8899999999999999999999998875433211111011221   2222 245689999987543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.20  E-value=0.011  Score=59.23  Aligned_cols=70  Identities=19%  Similarity=0.258  Sum_probs=52.1

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-ccccc---c----cccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEY---L----HEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~---l----~~~~~~~~divInatp  436 (518)
                      .|++++|+|+ ||+|++++..++..|++|++++|+.++.+.+ ++++... ++..+   +    .+......|++||++.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  223 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  223 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            5789999998 9999999999999999999999999888766 6776432 22211   1    1101135899999885

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.18  E-value=0.0044  Score=60.79  Aligned_cols=48  Identities=38%  Similarity=0.468  Sum_probs=40.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY-ERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~-~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+. ++++++++++
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l   68 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADEL   68 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHH
Confidence            3577899999987 6899999999999999999999998 8888877665

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.17  E-value=0.0033  Score=66.12  Aligned_cols=100  Identities=18%  Similarity=0.151  Sum_probs=65.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc----------------cccc-ccccccCCCCccE
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE----------------ALHF-EYLHEFFPEKGMI  430 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~----------------~~~~-~~l~~~~~~~~di  430 (518)
                      -++.|||+|-+|.+++..|++.|++|++++|++++++++.+.....                .+.+ .++.+ ...++|+
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~e-a~~~aDv   87 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAE-GVKDADA   87 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHH-HHTTCSE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHH-HHhcCCE
Confidence            4799999999999999999999999999999999998886532110                0111 12222 3457899


Q ss_pred             EEEcCCCCCCCCCCCCC----CCh------hhhcCCCEEEEEeeCCCch
Q 010101          431 LANASAIGMEPNSDQSP----VPK------EALKAYELVFDAVYTPRNT  469 (518)
Q Consensus       431 vInatp~g~~~~~~~~~----~~~------~~l~~~~~v~Di~Y~P~~T  469 (518)
                      +|-|.|...... +..+    +..      ..++++.+|++.+..|..|
T Consensus        88 vii~Vptp~~~~-~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  135 (446)
T 4a7p_A           88 VFIAVGTPSRRG-DGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGT  135 (446)
T ss_dssp             EEECCCCCBCTT-TCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTH
T ss_pred             EEEEcCCCCccc-cCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchH
Confidence            999865432110 1111    110      1246778899987665543

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.17  E-value=0.0084  Score=57.62  Aligned_cols=44  Identities=34%  Similarity=0.456  Sum_probs=39.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI   46 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            578999987 68999999999999999999999999988887765

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.15  E-value=0.01  Score=59.40  Aligned_cols=74  Identities=16%  Similarity=0.140  Sum_probs=53.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC--HHHHHHHHHHhcCc--------cccc-ccccccCCCCccEEEE
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN--YERAKALADAVSGE--------ALHF-EYLHEFFPEKGMILAN  433 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt--~~ka~~la~~~~~~--------~~~~-~~l~~~~~~~~divIn  433 (518)
                      +.+++.|+|+|.+|.++++.|+..|. +|++++++  .++++..+.++...        .+.. .+. + ...++|+||.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~-~-a~~~aDvVIi   84 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDY-A-DTADSDVVVI   84 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCG-G-GGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCH-H-HhCCCCEEEE
Confidence            35789999999999999999999999 99999999  67776665444211        0111 122 2 3567999999


Q ss_pred             cCCCCCCC
Q 010101          434 ASAIGMEP  441 (518)
Q Consensus       434 atp~g~~~  441 (518)
                      |.+..-.|
T Consensus        85 aag~p~kp   92 (315)
T 3tl2_A           85 TAGIARKP   92 (315)
T ss_dssp             CCSCCCCT
T ss_pred             eCCCCCCC
Confidence            87654444

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.14  E-value=0.011  Score=56.43  Aligned_cols=48  Identities=31%  Similarity=0.459  Sum_probs=40.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVII-FNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i-~nRt~~ka~~la~~~~  411 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+ ..|+.++++++.+++.
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~   53 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQ   53 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHH
Confidence            467899999987 68999999999999998877 5888888888776653

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.13  E-value=0.011  Score=62.53  Aligned_cols=42  Identities=19%  Similarity=0.268  Sum_probs=37.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD  408 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~  408 (518)
                      -++|.|||+|-||.+++..|++.|++|++++|++++++...+
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~   78 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKK   78 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence            368999999999999999999999999999999988776543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.13  E-value=0.0075  Score=61.21  Aligned_cols=40  Identities=30%  Similarity=0.526  Sum_probs=36.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      ..++||+++|.|+ ||.|++++..|++.|++|+++.|+.++
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            4678999999987 689999999999999999999999764

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.13  E-value=0.0039  Score=60.10  Aligned_cols=44  Identities=23%  Similarity=0.215  Sum_probs=36.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCC---CeEEEEeCCHHHHHHH
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRG---ARVIIFNRNYERAKAL  406 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G---~~v~i~nRt~~ka~~l  406 (518)
                      ..+++++++|.|+ ||.|++++..|++.|   ++|++++|+.++.+.+
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~   64 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL   64 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH
Confidence            4577899999987 789999999999999   8999999998765544

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.12  E-value=0.0072  Score=58.01  Aligned_cols=73  Identities=26%  Similarity=0.165  Sum_probs=49.8

Q ss_pred             CcccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc-c-cccc-ccccc--CCCCccEEEEcC
Q 010101          362 TSPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE-A-LHFE-YLHEF--FPEKGMILANAS  435 (518)
Q Consensus       362 ~~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~-~-~~~~-~l~~~--~~~~~divInat  435 (518)
                      ...+++|+++|.|+ ||.|++++..|++.|++|++++|+.+.++++    +.. . .++. ++...  .....|++||+.
T Consensus        14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~iD~lv~~A   89 (249)
T 1o5i_A           14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS----GHRYVVCDLRKDLDLLFEKVKEVDILVLNA   89 (249)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT----CSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh----CCeEEEeeHHHHHHHHHHHhcCCCEEEECC
Confidence            35688999999988 6899999999999999999999998655443    211 1 1111 11110  123689999987


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      ...
T Consensus        90 g~~   92 (249)
T 1o5i_A           90 GGP   92 (249)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.12  E-value=0.0092  Score=58.46  Aligned_cols=48  Identities=23%  Similarity=0.371  Sum_probs=41.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-NYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-t~~ka~~la~~~~  411 (518)
                      ++.+|+++|.|+ ||.|++++..|++.|++|++++| +.++++++++++.
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~   71 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVA   71 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHh
Confidence            467899999987 68999999999999999999999 7778888777663

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.11  E-value=0.0033  Score=64.40  Aligned_cols=69  Identities=10%  Similarity=0.080  Sum_probs=49.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC-------CeEEEEeCCHH-----HHHHHHHHhc-Cc---------ccc-cccccccC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRG-------ARVIIFNRNYE-----RAKALADAVS-GE---------ALH-FEYLHEFF  424 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G-------~~v~i~nRt~~-----ka~~la~~~~-~~---------~~~-~~~l~~~~  424 (518)
                      .++.|||+|.+|.+++..|++.|       .+|++++|+.+     +++.+.+.-. ..         .+. ..++.+ .
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e-a  100 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS-V  100 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH-H
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH-H
Confidence            47999999999999999999989       89999999988     8888765320 00         001 112222 2


Q ss_pred             CCCccEEEEcCCC
Q 010101          425 PEKGMILANASAI  437 (518)
Q Consensus       425 ~~~~divInatp~  437 (518)
                      ..++|+||-|+|.
T Consensus       101 ~~~aDvVilav~~  113 (375)
T 1yj8_A          101 INDADLLIFIVPC  113 (375)
T ss_dssp             HTTCSEEEECCCH
T ss_pred             HcCCCEEEEcCCH
Confidence            3467899888874

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.10  E-value=0.0071  Score=63.32  Aligned_cols=111  Identities=17%  Similarity=0.184  Sum_probs=74.6

Q ss_pred             cEEEEEccchhHH-HHHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCc------ccccccccccCCCCccEEEEcCCCC
Q 010101          368 KIFVLVGAGGAGR-ALAFGAKSR-GAR-VIIFNRNYERAKALADAVSGE------ALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       368 k~vlvlGaGg~ar-aia~~L~~~-G~~-v~i~nRt~~ka~~la~~~~~~------~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      -++.|||+|.+|+ ..+.+|.+. +++ +.|++|+.++++++++.++..      +.+++++-+  ..+.|+|+.+||..
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~--~~~vD~V~iatp~~  161 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAK--DPKIDAVYIILPNS  161 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGG--CTTCCEEEECSCGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhc--CCCCCEEEEcCCch
Confidence            4899999999997 888888775 455 579999999999999998753      123343321  23689999999865


Q ss_pred             CCCCCCCCCCChhhhcCCC-EEEEEeeCCC------chHHHHHHHHCCCeeeccHHH
Q 010101          439 MEPNSDQSPVPKEALKAYE-LVFDAVYTPR------NTRLLREAAEVGATVVSGVEM  488 (518)
Q Consensus       439 ~~~~~~~~~~~~~~l~~~~-~v~Di~Y~P~------~T~ll~~A~~~G~~~i~G~~m  488 (518)
                      ...     ++....+..+. ++++   +|.      -..+.+.|++.|..+.-|..+
T Consensus       162 ~h~-----~~~~~al~aGk~Vl~E---KPla~~~~e~~~l~~~a~~~g~~~~v~~~~  210 (433)
T 1h6d_A          162 LHA-----EFAIRAFKAGKHVMCE---KPMATSVADCQRMIDAAKAANKKLMIGYRC  210 (433)
T ss_dssp             GHH-----HHHHHHHHTTCEEEEC---SSCCSSHHHHHHHHHHHHHHTCCEEECCGG
T ss_pred             hHH-----HHHHHHHHCCCcEEEc---CCCCCCHHHHHHHHHHHHHhCCeEEEEech
Confidence            331     12223455544 4433   343      135677788889887766543

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.10  E-value=0.0021  Score=64.69  Aligned_cols=109  Identities=20%  Similarity=0.153  Sum_probs=66.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC-Ce-EEEEeCCHHHHHHHHHHhcCc--ccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRG-AR-VIIFNRNYERAKALADAVSGE--ALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G-~~-v~i~nRt~~ka~~la~~~~~~--~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .++.|||+|.+|+..+.+|.+.+ ++ +.|++|+.++++++++.++..  +-+++++-+  ..+.|+|+.+||...... 
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~~-   82 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLA--DESIDVIYVATINQDHYK-   82 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHT--CTTCCEEEECSCGGGHHH-
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEECCCcHHHHH-
Confidence            58999999999999999988764 55 568999999999999888753  224444321  246899999998653211 


Q ss_pred             CCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeecc
Q 010101          444 DQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSG  485 (518)
Q Consensus       444 ~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G  485 (518)
                          +....+..+.-|+  +=+|.-      ..+.+.|++.|..+.-|
T Consensus        83 ----~~~~al~aGk~Vl--~EKP~a~~~~e~~~l~~~a~~~~~~~~v~  124 (329)
T 3evn_A           83 ----VAKAALLAGKHVL--VEKPFTLTYDQANELFALAESCNLFLMEA  124 (329)
T ss_dssp             ----HHHHHHHTTCEEE--EESSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ----HHHHHHHCCCeEE--EccCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence                1122344443232  223421      24556666666655444

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.09  E-value=0.01  Score=57.90  Aligned_cols=49  Identities=27%  Similarity=0.411  Sum_probs=42.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-------------CHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-------------NYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-------------t~~ka~~la~~~~  411 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|             +.++.+++++.+.
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVE   73 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHH
Confidence            3578999999987 68999999999999999999998             7888888877664

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.07  E-value=0.016  Score=55.69  Aligned_cols=76  Identities=14%  Similarity=0.119  Sum_probs=51.2

Q ss_pred             cccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhcC-cc--ccccc---cccc------C
Q 010101          363 SPIAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNYE---RAKALADAVSG-EA--LHFEY---LHEF------F  424 (518)
Q Consensus       363 ~~l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~~---ka~~la~~~~~-~~--~~~~~---l~~~------~  424 (518)
                      ..+++|+++|.|+   ||.|++++..|++.|++|.++.|+..   +++++.+..+. ..  .++.+   +...      .
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            5678999999996   58999999999999999999998843   34444444442 11  11111   1110      1


Q ss_pred             CCCccEEEEcCCCC
Q 010101          425 PEKGMILANASAIG  438 (518)
Q Consensus       425 ~~~~divInatp~g  438 (518)
                      ....|++||+....
T Consensus        90 ~g~id~lv~nAg~~  103 (271)
T 3ek2_A           90 WDSLDGLVHSIGFA  103 (271)
T ss_dssp             CSCEEEEEECCCCC
T ss_pred             cCCCCEEEECCccC
Confidence            24579999987653

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.07  E-value=0.0066  Score=58.54  Aligned_cols=46  Identities=20%  Similarity=0.389  Sum_probs=40.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH-HHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER-AKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k-a~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++ ++++++++
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   49 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGL   49 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHH
Confidence            45789999987 689999999999999999999999887 77776655

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.06  E-value=0.0019  Score=63.57  Aligned_cols=110  Identities=15%  Similarity=0.089  Sum_probs=68.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCC-CCCCC-
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGME-PNSDQ-  445 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~-~~~~~-  445 (518)
                      .++.|||+|.+|++++..|.+.|++|++++ +.++++++.+. +...  ..++.+ ...++|+||.++|.... ...-. 
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~-g~~~--~~~~~~-~~~~~D~vi~~vp~~~~~~~v~~~   78 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSL-GAVN--VETARQ-VTEFADIIFIMVPDTPQVEDVLFG   78 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTT-TCBC--CSSHHH-HHHTCSEEEECCSSHHHHHHHHHS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHc-CCcc--cCCHHH-HHhcCCEEEEECCCHHHHHHHHhC
Confidence            479999999999999999999999999999 88888877654 3221  122222 23468999999975421 00000 


Q ss_pred             -CCCChhhhcCCCEEEEEeeCC-Cch-HHHHHHHHCCCeee
Q 010101          446 -SPVPKEALKAYELVFDAVYTP-RNT-RLLREAAEVGATVV  483 (518)
Q Consensus       446 -~~~~~~~l~~~~~v~Di~Y~P-~~T-~ll~~A~~~G~~~i  483 (518)
                       ..+ ...+.++.+++|+.-.. ..+ .+.+.+.+.|..++
T Consensus        79 ~~~l-~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~  118 (295)
T 1yb4_A           79 EHGC-AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYL  118 (295)
T ss_dssp             TTSS-TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             chhH-hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence             001 11345667888886543 222 33344455565544

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.05  E-value=0.0034  Score=59.50  Aligned_cols=43  Identities=26%  Similarity=0.307  Sum_probs=37.7

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRG--ARVIIFNRNYERAKALAD  408 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G--~~v~i~nRt~~ka~~la~  408 (518)
                      ++++++|.|+ ||.|++++..|++.|  ++|+++.|+.++.+++.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~   47 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS   47 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh
Confidence            3688999987 689999999999999  899999999988877653

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=96.04  E-value=0.23  Score=47.14  Aligned_cols=127  Identities=11%  Similarity=0.082  Sum_probs=80.6

Q ss_pred             EEEeecCCC------HHHHHHHHHHHHhhCCCEEEEEeccCCCCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHH
Q 010101           11 VCTQLECET------TEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNT   84 (518)
Q Consensus        11 icv~l~~~~------~~~~~~~~~~~~~~g~D~vElRlD~l~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   84 (518)
                      +.|+.....      ...+...++.+...|+..++.  .    ++ +.+..+++.+++|+|--.|..-.|-.+-.+ +  
T Consensus        20 livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~--~----~~-~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~-~--   89 (229)
T 3q58_A           20 LIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRI--E----GI-ENLRTVRPHLSVPIIGIIKRDLTGSPVRIT-P--   89 (229)
T ss_dssp             EEEECCCCTTSTTCSHHHHHHHHHHHHHTTCSEEEE--E----SH-HHHHHHGGGCCSCEEEECBCCCSSCCCCBS-C--
T ss_pred             EEEEEeCCCCCCCCCcchHHHHHHHHHHCCCcEEEE--C----CH-HHHHHHHHhcCCCEEEEEeecCCCCceEeC-c--
Confidence            445555544      666666666666789999864  2    22 478899999999999776643322112233 1  


Q ss_pred             HHHHHHHHhhcCCcEEEEecCC--CCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEE
Q 010101           85 CLQVLRRALDLDVEFVEMDYEV--ASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKL  158 (518)
Q Consensus        85 ~~~ll~~~~~~g~~yvDiEl~~--~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKi  158 (518)
                      +.+-+..+.+.|+|+|=+....  .++.+.++.+ .++.+..++++.|+.       ++    ..++.+.|+|++-+
T Consensus        90 ~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~-------ee----a~~a~~~Gad~Ig~  155 (229)
T 3q58_A           90 YLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTV-------NE----GISCHQKGIEFIGT  155 (229)
T ss_dssp             SHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSH-------HH----HHHHHHTTCSEEEC
T ss_pred             cHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCH-------HH----HHHHHhCCCCEEEe
Confidence            2223456778899999877653  2234445544 445678899888853       23    45677889999954

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.04  E-value=0.011  Score=57.93  Aligned_cols=48  Identities=23%  Similarity=0.301  Sum_probs=42.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+++++++
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l   88 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI   88 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHH
Confidence            4567899999987 68999999999999999999999999888887766

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.03  E-value=0.0068  Score=64.23  Aligned_cols=102  Identities=19%  Similarity=0.045  Sum_probs=66.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHH----HHHHHHHHhcC------------------cccccccccc
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSR-GA-RVIIFNRNYE----RAKALADAVSG------------------EALHFEYLHE  422 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~-G~-~v~i~nRt~~----ka~~la~~~~~------------------~~~~~~~l~~  422 (518)
                      -.++.|||+|-+|.+++..|++. |+ +|++++|+++    +++++.+....                  ..+.+..-.+
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~e   97 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFS   97 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHH
Confidence            36899999999999999999999 99 9999999999    88877642110                  0011111112


Q ss_pred             cCCCCccEEEEcCCCCCCCCC----CCCCCC---h---hhhcCCCEEEEEeeCCCch
Q 010101          423 FFPEKGMILANASAIGMEPNS----DQSPVP---K---EALKAYELVFDAVYTPRNT  469 (518)
Q Consensus       423 ~~~~~~divInatp~g~~~~~----~~~~~~---~---~~l~~~~~v~Di~Y~P~~T  469 (518)
                       ...++|+||-|.|....++.    +-..+.   .   ..++++.+|+|....|..|
T Consensus        98 -a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgt  153 (478)
T 3g79_A           98 -RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGT  153 (478)
T ss_dssp             -GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTT
T ss_pred             -HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHH
Confidence             35678999999876543221    100011   1   1256778898888776543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.03  E-value=0.003  Score=59.05  Aligned_cols=68  Identities=18%  Similarity=0.216  Sum_probs=47.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccc----ccccccCCCCccEEEEcCCCC
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF----EYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~----~~l~~~~~~~~divInatp~g  438 (518)
                      +++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++ ..+.....++    +++.. ...+.|+|||+....
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~D~~d~~~~~~~-~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFDVDWTPEEMAK-QLHGMDAIINVSGSG   74 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-TTEEEEECCTTSCHHHHHT-TTTTCSEEEECCCCT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-CCceEEEecccCCHHHHHH-HHcCCCEEEECCcCC
Confidence            6899995 8899999999999999999999998875443 1111001122    22333 456789999988653

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=96.03  E-value=0.0013  Score=65.70  Aligned_cols=110  Identities=15%  Similarity=0.094  Sum_probs=70.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCccccccccccc-CCCCccEEEEcCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-GAR-VIIFNRNYERAKALADAVSGEALHFEYLHEF-FPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-G~~-v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~-~~~~~divInatp~g~~~~~~  444 (518)
                      .++.|||+|.+|+..+.+|.+. +++ +.+++|+.++++++++..  .  .+.++.+. ...+.|+|+.+||.....   
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~--~--~~~~~~~~l~~~~~D~V~i~tp~~~h~---   83 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGC--V--IESDWRSVVSAPEVEAVIIATPPATHA---   83 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTC--E--EESSTHHHHTCTTCCEEEEESCGGGHH---
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhC--c--ccCCHHHHhhCCCCCEEEEeCChHHHH---
Confidence            5899999999999999999886 565 669999999987766541  1  12222221 123689999999865321   


Q ss_pred             CCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHHH
Q 010101          445 QSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVEM  488 (518)
Q Consensus       445 ~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~m  488 (518)
                        ++....++.+.-|+  +-+|.-      ..+.+.|++.|..+..|..+
T Consensus        84 --~~~~~al~~Gk~v~--~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~  129 (315)
T 3c1a_A           84 --EITLAAIASGKAVL--VEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQ  129 (315)
T ss_dssp             --HHHHHHHHTTCEEE--EESSSCSCHHHHHHHHHHHHHHCCCEEEECGG
T ss_pred             --HHHHHHHHCCCcEE--EcCCCcCCHHHHHHHHHHHHHcCCEEEEeech
Confidence              12223455554333  224431      45677788888877666543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.03  E-value=0.002  Score=62.87  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=33.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      ++++||+|+|..|++++..|.+.|++|+++.|+.++
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            468999999999999999999999999999998765

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.03  E-value=0.0056  Score=60.12  Aligned_cols=70  Identities=14%  Similarity=0.231  Sum_probs=48.5

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-------HHHHHHHH--HhcCccc--cccc---ccccCCCCccEE
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY-------ERAKALAD--AVSGEAL--HFEY---LHEFFPEKGMIL  431 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~-------~ka~~la~--~~~~~~~--~~~~---l~~~~~~~~div  431 (518)
                      +++++|+|+ |+.|++++.+|.+.|++|+++.|+.       ++++.+.+  .-+...+  ++.+   +.. ...+.|+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~-~~~~~d~v   80 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVK-AIKQVDIV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHH-HHTTCSEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHH-HHhCCCEE
Confidence            467999997 8899999999999999999999987       66655432  1122221  2222   222 34568999


Q ss_pred             EEcCCC
Q 010101          432 ANASAI  437 (518)
Q Consensus       432 Inatp~  437 (518)
                      ||+.+.
T Consensus        81 i~~a~~   86 (307)
T 2gas_A           81 ICAAGR   86 (307)
T ss_dssp             EECSSS
T ss_pred             EECCcc
Confidence            998764

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.02  E-value=0.014  Score=57.02  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=52.5

Q ss_pred             ccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHhcCc-c--ccccc---cccc------CCC
Q 010101          364 PIAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNY--ERAKALADAVSGE-A--LHFEY---LHEF------FPE  426 (518)
Q Consensus       364 ~l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~--~ka~~la~~~~~~-~--~~~~~---l~~~------~~~  426 (518)
                      .+++|+++|.|+   +|.|++++..|++.|++|.+++|+.  +.++++.+..+.. .  .++.+   +...      ...
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWD  102 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcC
Confidence            467899999996   3599999999999999999999987  6777776665421 1  11111   1110      124


Q ss_pred             CccEEEEcCCCC
Q 010101          427 KGMILANASAIG  438 (518)
Q Consensus       427 ~~divInatp~g  438 (518)
                      ..|++||+....
T Consensus       103 ~id~li~nAg~~  114 (280)
T 3nrc_A          103 GLDAIVHSIAFA  114 (280)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CCCEEEECCccC
Confidence            579999987543

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.01  E-value=0.0099  Score=62.14  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=66.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-ccccc----------c--cccCCCCccEEE
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEY----------L--HEFFPEKGMILA  432 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~----------l--~~~~~~~~divI  432 (518)
                      +|.+.-|||.|-+|..++..|++.|++|++++|+++++++|.+.-.... ..+++          +  .. ...++|++|
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~tt-d~~~aDvvi   88 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVST-TPEASDVFI   88 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEES-SCCCCSEEE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeC-chhhCCEEE
Confidence            5788999999999999999999999999999999999999875321100 01110          0  01 245789999


Q ss_pred             EcCCCCCCCCCCCCC----CC---h---hhhcCCCEEEEEeeCCCch
Q 010101          433 NASAIGMEPNSDQSP----VP---K---EALKAYELVFDAVYTPRNT  469 (518)
Q Consensus       433 natp~g~~~~~~~~~----~~---~---~~l~~~~~v~Di~Y~P~~T  469 (518)
                      -|.|-....+....+    +.   .   ..++++.+|+|.+..|..|
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgt  135 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKT  135 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhH
Confidence            888754321100111    11   0   1256778888888776654

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.00  E-value=0.013  Score=57.91  Aligned_cols=48  Identities=25%  Similarity=0.390  Sum_probs=41.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------HHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN------------YERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt------------~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+            .++++++++++
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQV   84 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHH
Confidence            3578999999988 689999999999999999999887            77777776654

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.00  E-value=0.0072  Score=62.90  Aligned_cols=116  Identities=18%  Similarity=0.113  Sum_probs=76.2

Q ss_pred             CcEEEEEccch---hHHHHHHHHHHCC-CeEE--EEeCCHHHHHHHHHHhcCc----ccccccccccC---CCCccEEEE
Q 010101          367 GKIFVLVGAGG---AGRALAFGAKSRG-ARVI--IFNRNYERAKALADAVSGE----ALHFEYLHEFF---PEKGMILAN  433 (518)
Q Consensus       367 ~k~vlvlGaGg---~araia~~L~~~G-~~v~--i~nRt~~ka~~la~~~~~~----~~~~~~l~~~~---~~~~divIn  433 (518)
                      .-++.|||+|.   +|+.-+.++...+ ++|.  |++|+++++++++++++..    +-+++++-+..   ..+.|+|+.
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            34899999998   9998888888776 4654  7899999999999999863    12444432200   135899999


Q ss_pred             cCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHH
Q 010101          434 ASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       434 atp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml  489 (518)
                      +||.....     ++....+..+.-|+  +=+|.-      -.+++.|++.|..+.-|...-
T Consensus       117 ~tp~~~H~-----~~~~~al~aGkhVl--~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R  171 (417)
T 3v5n_A          117 VTPNHVHY-----AAAKEFLKRGIHVI--CDKPLTSTLADAKKLKKAADESDALFVLTHNYT  171 (417)
T ss_dssp             CSCTTSHH-----HHHHHHHTTTCEEE--EESSSCSSHHHHHHHHHHHHHCSSCEEEECGGG
T ss_pred             CCCcHHHH-----HHHHHHHhCCCeEE--EECCCcCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            99875432     12234455554333  335532      347778888898876665543

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.00  E-value=0.0074  Score=58.71  Aligned_cols=42  Identities=19%  Similarity=0.389  Sum_probs=37.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAK  404 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~  404 (518)
                      .+++||.++|.|+ +|.|++++..|++.|++|.+++|+.++.+
T Consensus         3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~   45 (258)
T 4gkb_A            3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGA   45 (258)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHH
Confidence            4688999999988 58999999999999999999999876543

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.00  E-value=0.01  Score=56.03  Aligned_cols=73  Identities=25%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-cc--ccccc---cccc------CCCCccEEE
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG-EA--LHFEY---LHEF------FPEKGMILA  432 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~-~~--~~~~~---l~~~------~~~~~divI  432 (518)
                      .+|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.++++. ..  .++.+   +...      .....|++|
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3678999987 6899999999999999999999999998888876531 11  11111   1110      113579999


Q ss_pred             EcCCCC
Q 010101          433 NASAIG  438 (518)
Q Consensus       433 natp~g  438 (518)
                      |+...+
T Consensus        84 ~~Ag~~   89 (234)
T 2ehd_A           84 NNAGVG   89 (234)
T ss_dssp             ECCCCC
T ss_pred             ECCCcC
Confidence            987654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=95.99  E-value=0.013  Score=57.07  Aligned_cols=48  Identities=33%  Similarity=0.475  Sum_probs=41.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------HHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN------------YERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt------------~~ka~~la~~~  410 (518)
                      .++++|++||.|+ ||.|++++..|++.|++|.+++|+            .++.+++++.+
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~   69 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLV   69 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHH
Confidence            4578999999987 689999999999999999999987            77777666554

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.98  E-value=0.0079  Score=60.72  Aligned_cols=119  Identities=16%  Similarity=0.115  Sum_probs=80.0

Q ss_pred             CcEEEEEccc-hhHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHhcC-c-ccccccccccCCCCccEEEEcCCCCCC
Q 010101          367 GKIFVLVGAG-GAGRALAFGAKSR--GAR-VIIFNRNYERAKALADAVSG-E-ALHFEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       367 ~k~vlvlGaG-g~araia~~L~~~--G~~-v~i~nRt~~ka~~la~~~~~-~-~~~~~~l~~~~~~~~divInatp~g~~  440 (518)
                      .-++.|||+| .+|+..+.+|.+.  +++ +.|++|+++++++++++++. . +-+++++-+  ..+.|+|+.|||....
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~--~~~vD~V~i~tp~~~H   95 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLE--SGLVDAVDLTLPVELN   95 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHH--SSCCSEEEECCCGGGH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhc--CCCCCEEEEeCCchHH
Confidence            3589999999 7999999999876  455 57999999999999999875 2 223444321  2458999999986532


Q ss_pred             CCCCCCCCChhhhcCCC-EEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHHHHHHHH
Q 010101          441 PNSDQSPVPKEALKAYE-LVFDAVYTPRN------TRLLREAAEVGATVVSGVEMFIRQALG  495 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~-~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml~~Qa~~  495 (518)
                      .     ++....+..+. ++++   +|.-      ..+.+.|++.|..+.-|..+-...+..
T Consensus        96 ~-----~~~~~al~aGkhVl~E---KPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~  149 (340)
T 1zh8_A           96 L-----PFIEKALRKGVHVICE---KPISTDVETGKKVVELSEKSEKTVYIAENFRHVPAFW  149 (340)
T ss_dssp             H-----HHHHHHHHTTCEEEEE---SSSSSSHHHHHHHHHHHHHCSSCEEEECGGGGCHHHH
T ss_pred             H-----HHHHHHHHCCCcEEEe---CCCCCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHH
Confidence            1     12234455543 4444   5542      457778888998877666554333333

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=95.96  E-value=0.0042  Score=62.31  Aligned_cols=67  Identities=19%  Similarity=0.164  Sum_probs=47.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCC----CeEEEEeCCHH--HHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRG----ARVIIFNRNYE--RAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G----~~v~i~nRt~~--ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      ..++.|||+|.+|.+++..|.+.|    .+|++++|+.+  +++.+. +.+....  .+..+ ...++|+||-|+|.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~-~~G~~~~--~~~~e-~~~~aDvVilav~~   94 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR-KMGVKLT--PHNKE-TVQHSDVLFLAVKP   94 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH-HHTCEEE--SCHHH-HHHHCSEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH-HcCCEEe--CChHH-HhccCCEEEEEeCH
Confidence            457999999999999999999999    68999999986  777775 3343211  11111 12346777777763

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=95.96  E-value=0.017  Score=55.72  Aligned_cols=38  Identities=34%  Similarity=0.471  Sum_probs=33.8

Q ss_pred             ccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          364 PIAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       364 ~l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      ++++|+++|.|++   |.|++++..|++.|++|.++.|+.+
T Consensus        17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~   57 (267)
T 3gdg_A           17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRA   57 (267)
T ss_dssp             CCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSS
T ss_pred             CcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcc
Confidence            4689999999985   8999999999999999999988743

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.95  E-value=0.008  Score=61.04  Aligned_cols=71  Identities=14%  Similarity=0.186  Sum_probs=53.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-ccccc---ccccCCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEY---LHEFFPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~---l~~~~~~~~divInatp~  437 (518)
                      .|.+|+|+|+|++|.+++..++..|++|+++.++.++.+.+.++++... +...+   +.+ ....+|++|++++.
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~-~~~g~D~vid~~g~  254 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSE-LADSLDYVIDTVPV  254 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHH-STTTEEEEEECCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHH-hcCCCCEEEECCCC
Confidence            5789999999999999998888889999999999888766655777643 22221   222 22468999999863

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=95.95  E-value=0.011  Score=56.90  Aligned_cols=48  Identities=31%  Similarity=0.533  Sum_probs=41.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-NYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-t~~ka~~la~~~  410 (518)
                      ..+++++++|.|+ ||.|++++..|.+.|++|+++.| +.++.+++.+++
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l   66 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL   66 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHH
Confidence            4577899999987 78999999999999999999999 888887776655

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.94  E-value=0.004  Score=62.97  Aligned_cols=70  Identities=17%  Similarity=0.136  Sum_probs=49.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCC-------CeEEEEeCCHH-----HHHHHHHHhc-Cc---------cccc-cccccc
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRG-------ARVIIFNRNYE-----RAKALADAVS-GE---------ALHF-EYLHEF  423 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G-------~~v~i~nRt~~-----ka~~la~~~~-~~---------~~~~-~~l~~~  423 (518)
                      ..++.|||+|.+|.+++..|++.|       .+|++++|+.+     +++.+.+... ..         .+.. .++.+ 
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-   86 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ-   86 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH-
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH-
Confidence            358999999999999999999988       79999999988     8877765311 00         0111 12222 


Q ss_pred             CCCCccEEEEcCCC
Q 010101          424 FPEKGMILANASAI  437 (518)
Q Consensus       424 ~~~~~divInatp~  437 (518)
                      ...++|+||-|+|.
T Consensus        87 ~~~~aD~Vilav~~  100 (354)
T 1x0v_A           87 AAEDADILIFVVPH  100 (354)
T ss_dssp             HHTTCSEEEECCCG
T ss_pred             HHcCCCEEEEeCCH
Confidence            23568999988874

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.94  E-value=0.0012  Score=63.91  Aligned_cols=41  Identities=24%  Similarity=0.305  Sum_probs=34.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERA  403 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka  403 (518)
                      ..+.+|+++|.|+ ||.|++++..|++.|++|++++|+.++.
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~   58 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP   58 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh
Confidence            4567899999988 6899999999999999999999987654

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=95.93  E-value=0.0045  Score=59.56  Aligned_cols=70  Identities=10%  Similarity=0.070  Sum_probs=48.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCccc--cccccccc------CCCCccEEEEcC
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV---SGEAL--HFEYLHEF------FPEKGMILANAS  435 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~---~~~~~--~~~~l~~~------~~~~~divInat  435 (518)
                      |+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++ +   +....  +.+++...      .....|++||+.
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~nA   80 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSND   80 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            57899987 689999999999999999999999888777654 3   22211  11111110      113579999987


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      ...
T Consensus        81 g~~   83 (254)
T 1zmt_A           81 IFA   83 (254)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.92  E-value=0.012  Score=61.20  Aligned_cols=107  Identities=12%  Similarity=0.152  Sum_probs=68.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-----ccccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-----HFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-----~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      +.+++|+|.|..|+.++..|.+.|++|+++++++++.+.+.+ .+...+     ..+.|....+.++|+||.+++-.   
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~---   79 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP---   79 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSH---
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECCCCh---
Confidence            357999999999999999999999999999999999887753 443322     22223333467899999988631   


Q ss_pred             CCCCCCCC--hhhhcCCCEEEEEeeCCCchHHHHHHHHCCCe
Q 010101          442 NSDQSPVP--KEALKAYELVFDAVYTPRNTRLLREAAEVGAT  481 (518)
Q Consensus       442 ~~~~~~~~--~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~  481 (518)
                      ..+ ..+-  ...+.+..-++--+..+...   ...++.|+.
T Consensus        80 ~~n-~~i~~~ar~~~p~~~Iiara~~~~~~---~~L~~~Gad  117 (413)
T 3l9w_A           80 QTN-LQLTEMVKEHFPHLQIIARARDVDHY---IRLRQAGVE  117 (413)
T ss_dssp             HHH-HHHHHHHHHHCTTCEEEEEESSHHHH---HHHHHTTCS
T ss_pred             HHH-HHHHHHHHHhCCCCeEEEEECCHHHH---HHHHHCCCC
Confidence            000 0000  01123444455556554433   444667875

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=95.92  E-value=0.0073  Score=57.62  Aligned_cols=47  Identities=23%  Similarity=0.282  Sum_probs=40.9

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN-YERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt-~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+ .++.+++.+++
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   52 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASM   52 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHH
Confidence            356899999987 789999999999999999999999 78877776655

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.92  E-value=0.023  Score=56.50  Aligned_cols=70  Identities=20%  Similarity=0.275  Sum_probs=49.4

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHh--cCc---c--cccc-cccccCCCCccEEEEcCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAV--SGE---A--LHFE-YLHEFFPEKGMILANASA  436 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~--~~~---~--~~~~-~l~~~~~~~~divInatp  436 (518)
                      ..++.|+|+|.+|.++++.|+..|.  +|++++|+.++++..+.++  +..   .  +... +. + ...++|+||.|++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~~aD~Vii~v~   84 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-E-ICRDADMVVITAG   84 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-G-GGTTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-H-HhCCCCEEEECCC
Confidence            3589999999999999999999997  9999999988876332221  110   0  1111 22 2 3467899999996


Q ss_pred             CC
Q 010101          437 IG  438 (518)
Q Consensus       437 ~g  438 (518)
                      ..
T Consensus        85 ~~   86 (319)
T 1lld_A           85 PR   86 (319)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=95.91  E-value=0.014  Score=56.75  Aligned_cols=47  Identities=26%  Similarity=0.413  Sum_probs=41.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-------------CHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-------------NYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-------------t~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|             +.++++++++.+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   68 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV   68 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHH
Confidence            578999999987 68999999999999999999998             677777776655

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=95.91  E-value=0.011  Score=57.42  Aligned_cols=48  Identities=29%  Similarity=0.483  Sum_probs=41.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-NYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-t~~ka~~la~~~  410 (518)
                      .++++|+++|.|+ ||.|++++..|++.|++|.+..| +.++++++++.+
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~   73 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAI   73 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHH
Confidence            3577899999987 68999999999999999998888 777777777665

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=95.91  E-value=0.0073  Score=61.87  Aligned_cols=111  Identities=17%  Similarity=0.261  Sum_probs=75.7

Q ss_pred             cEEEEEc-cchhHHH-HH----HHHHHCCC-eE----------EEEeCCHHHHHHHHHHhcCc--ccccccccccCCCCc
Q 010101          368 KIFVLVG-AGGAGRA-LA----FGAKSRGA-RV----------IIFNRNYERAKALADAVSGE--ALHFEYLHEFFPEKG  428 (518)
Q Consensus       368 k~vlvlG-aGg~ara-ia----~~L~~~G~-~v----------~i~nRt~~ka~~la~~~~~~--~~~~~~l~~~~~~~~  428 (518)
                      -++.||| +|.+|+. .+    .++.+.+. .+          .|++|+.++++++++.++..  +-+++++-+  ..+.
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~--~~~i   84 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALA--DKND   84 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHH--CSSC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhc--CCCC
Confidence            4799999 9999997 66    77766553 33          49999999999999999863  234555422  2458


Q ss_pred             cEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHH
Q 010101          429 MILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVE  487 (518)
Q Consensus       429 divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~  487 (518)
                      |+|+.+||.....     ++....+..+.-|+  +=+|.-      ..+++.|++.|+.+.-|..
T Consensus        85 D~V~i~tp~~~h~-----~~~~~al~~Gk~V~--~EKP~a~~~~~~~~l~~~a~~~~~~~~v~~~  142 (383)
T 3oqb_A           85 TMFFDAATTQARP-----GLLTQAINAGKHVY--CEKPIATNFEEALEVVKLANSKGVKHGTVQD  142 (383)
T ss_dssp             CEEEECSCSSSSH-----HHHHHHHTTTCEEE--ECSCSCSSHHHHHHHHHHHHHTTCCEEECCG
T ss_pred             CEEEECCCchHHH-----HHHHHHHHCCCeEE--EcCCCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence            9999999875432     13334566665555  445642      3577888889987655543

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=95.90  E-value=0.034  Score=52.66  Aligned_cols=69  Identities=28%  Similarity=0.326  Sum_probs=47.2

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc--ccccc--cccc------CCCCccEEEEcC
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA--LHFEY--LHEF------FPEKGMILANAS  435 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~--~~~~~--l~~~------~~~~~divInat  435 (518)
                      +|+++|.|+ ||.|++++..|++.|++|++++|+.++   ++++++...  .++.+  +...      .....|++||+.
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~A   78 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAA   78 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEEECC
Confidence            578999988 689999999999999999999999876   333443211  11211  1100      123579999987


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      ...
T Consensus        79 g~~   81 (239)
T 2ekp_A           79 AVN   81 (239)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.89  E-value=0.012  Score=57.12  Aligned_cols=48  Identities=35%  Similarity=0.425  Sum_probs=40.5

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-NYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-t~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|+++.| +.+..+++.+.+
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   74 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNEL   74 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            4578999999987 68999999999999999999999 566666666554

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.88  E-value=0.017  Score=56.21  Aligned_cols=48  Identities=23%  Similarity=0.393  Sum_probs=40.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------HHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN------------YERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt------------~~ka~~la~~~  410 (518)
                      ..+++|++||.|+ ||.|++++..|++.|++|.+++|+            .++.+++...+
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEV   66 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHH
Confidence            3578999999987 689999999999999999999997            67776666554

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.88  E-value=0.011  Score=59.29  Aligned_cols=39  Identities=26%  Similarity=0.352  Sum_probs=34.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKA  405 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~  405 (518)
                      -++|.|||||-||+.+|..++..|++|++++++++..++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~   44 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITG   44 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            358999999999999999999999999999999876554

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=95.87  E-value=0.0069  Score=58.36  Aligned_cols=42  Identities=26%  Similarity=0.413  Sum_probs=37.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKA  405 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~  405 (518)
                      -++||+++|.|+ +|.|++++..|++.|++|.+++|+.+++++
T Consensus         8 lf~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~   50 (242)
T 4b79_A            8 IYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA   50 (242)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh
Confidence            368999999988 589999999999999999999999876543

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.86  E-value=0.013  Score=57.99  Aligned_cols=71  Identities=15%  Similarity=0.130  Sum_probs=51.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhc-------Cc-cccc-ccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVS-------GE-ALHF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~-------~~-~~~~-~~l~~~~~~~~divInatp~  437 (518)
                      ++.|+|+|.+|.++++.|+..|.  +|.++++++++++..+.++.       .. .+.. .+ .+ ...++|+||.+.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~-a~~~aDiVViaag~   79 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YS-LLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GG-GGTTCSEEEECCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HH-HhCCCCEEEECCCC
Confidence            68999999999999999998886  89999999998874433321       11 1111 12 23 46789999999876


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      .-.|
T Consensus        80 ~~kp   83 (294)
T 1oju_A           80 ARKP   83 (294)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            5444

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.85  E-value=0.015  Score=56.77  Aligned_cols=48  Identities=19%  Similarity=0.253  Sum_probs=41.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-NYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-t~~ka~~la~~~~  411 (518)
                      .+.+|+++|.|+ ||.|++++..|++.|++|.+++| +.++++++++++.
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~   75 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELS   75 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHH
Confidence            467899999987 68999999999999999999985 8888888877653

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.85  E-value=0.014  Score=56.81  Aligned_cols=48  Identities=31%  Similarity=0.408  Sum_probs=40.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFN-RNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~n-Rt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.++. |+.++++++++++
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l   76 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEI   76 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            3578999999987 6899999999999999988884 5567777777665

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.84  E-value=0.0067  Score=63.55  Aligned_cols=100  Identities=15%  Similarity=0.045  Sum_probs=64.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----------------ccccc-ccccccCCCCccEE
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG----------------EALHF-EYLHEFFPEKGMIL  431 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~----------------~~~~~-~~l~~~~~~~~div  431 (518)
                      ++.|||+|.+|.+++..|++.|.+|++++|++++++++.+....                ..+.. .++.+ ...++|+|
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~-~~~~aDvv   80 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKK-AVLDSDVS   80 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHH-HHHTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHH-HhccCCEE
Confidence            68999999999999999999999999999999999888652100                00111 11111 23468999


Q ss_pred             EEcCCCCCCCCC--CCCCCCh------hhhcC---CCEEEEEeeCCCch
Q 010101          432 ANASAIGMEPNS--DQSPVPK------EALKA---YELVFDAVYTPRNT  469 (518)
Q Consensus       432 Inatp~g~~~~~--~~~~~~~------~~l~~---~~~v~Di~Y~P~~T  469 (518)
                      |-|+|.......  |-..+..      ..+++   +.+|++....|..|
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~  129 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             EEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence            999975432110  0000110      12456   78888887666555

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=95.84  E-value=0.013  Score=56.36  Aligned_cols=45  Identities=18%  Similarity=0.265  Sum_probs=40.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKS-RGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~-~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++|+++|.|+ ||.|++++..|++ .|++|++++|+.++++++.+++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l   49 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL   49 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHH
Confidence            4789999987 7899999999999 9999999999999888877665

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=95.82  E-value=0.013  Score=56.62  Aligned_cols=47  Identities=28%  Similarity=0.376  Sum_probs=40.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIF-NRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~-nRt~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.++ .|+.++++++.+++
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~   53 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEI   53 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            467899999987 689999999999999998888 77777777776665

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.82  E-value=0.0069  Score=57.52  Aligned_cols=109  Identities=11%  Similarity=0.038  Sum_probs=67.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-----ccccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-----HFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-----~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .++++|+|+|..|+.++..|.+.|. |++++|++++++.+.  .+...+     +.+.+....+.++|.+|.+|+-... 
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~-   84 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE-   84 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHH-
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHH-
Confidence            4689999999999999999999999 999999999887776  332221     1122333246789999998863200 


Q ss_pred             CCCCCCCC--hhhhcCCCEEEEEeeCCCchHHHHHHHHCCCe-eecc
Q 010101          442 NSDQSPVP--KEALKAYELVFDAVYTPRNTRLLREAAEVGAT-VVSG  485 (518)
Q Consensus       442 ~~~~~~~~--~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~-~i~G  485 (518)
                         ...+.  ...+.+...++-.+.+|....   ..++.|+. +++-
T Consensus        85 ---n~~~~~~a~~~~~~~~iia~~~~~~~~~---~l~~~G~~~vi~p  125 (234)
T 2aef_A           85 ---TIHCILGIRKIDESVRIIAEAERYENIE---QLRMAGADQVISP  125 (234)
T ss_dssp             ---HHHHHHHHHHHCSSSEEEEECSSGGGHH---HHHHHTCSEEECH
T ss_pred             ---HHHHHHHHHHHCCCCeEEEEECCHhHHH---HHHHCCCCEEECH
Confidence               00000  011334434445556666553   34466775 4443

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.82  E-value=0.024  Score=56.60  Aligned_cols=71  Identities=20%  Similarity=0.222  Sum_probs=54.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc-------cccccccccCCCCccEEEEcCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA-------LHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~-------~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      ++.|+|+|.+|.+.++.|+..+.  +|.+++++.++++..+.++....       +...+ .+ ...++|+||.+.+.+.
T Consensus         2 KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~-~~-a~~~aD~Vii~ag~~~   79 (310)
T 2xxj_A            2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGS-YG-DLEGARAVVLAAGVAQ   79 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECC-GG-GGTTEEEEEECCCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECC-HH-HhCCCCEEEECCCCCC
Confidence            78999999999999999998874  89999999999988777765321       11112 22 3578999999987765


Q ss_pred             CC
Q 010101          440 EP  441 (518)
Q Consensus       440 ~~  441 (518)
                      .|
T Consensus        80 ~~   81 (310)
T 2xxj_A           80 RP   81 (310)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.81  E-value=0.023  Score=57.21  Aligned_cols=69  Identities=14%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------c-cccc-ccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSG-------E-ALHF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~-------~-~~~~-~~l~~~~~~~~divInatp~  437 (518)
                      +++.|+|+|.+|.++++.|+..|. +|.+++++.++++..+..+..       . .+.. .++ + ...++|+||.+.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~-al~~aD~VI~avg~   92 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-E-YLQNSDVVIITAGV   92 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-G-GGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-H-HHCCCCEEEEcCCC
Confidence            589999999999999999999998 999999999888765433321       1 1122 233 2 45789999999854


Q ss_pred             C
Q 010101          438 G  438 (518)
Q Consensus       438 g  438 (518)
                      .
T Consensus        93 p   93 (328)
T 2hjr_A           93 P   93 (328)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.80  E-value=0.017  Score=57.83  Aligned_cols=73  Identities=19%  Similarity=0.221  Sum_probs=52.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc-----cccc-cccccCCCCccEEEEcCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA-----LHFE-YLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~-----~~~~-~l~~~~~~~~divInatp~g~  439 (518)
                      .++.|+|+|.+|.+.++.|+..+.  +|.+++++.++++..+.++....     ..+. +..+ ...++|+||.+.+.+.
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~-a~~~aDvVii~ag~~~   84 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGAPQ   84 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHH-HhCCCCEEEECCCCCC
Confidence            589999999999999999987775  89999999999988777664221     1111 1122 3578999999997765


Q ss_pred             CC
Q 010101          440 EP  441 (518)
Q Consensus       440 ~~  441 (518)
                      .|
T Consensus        85 ~~   86 (318)
T 1ez4_A           85 KP   86 (318)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.80  E-value=0.021  Score=57.32  Aligned_cols=71  Identities=20%  Similarity=0.232  Sum_probs=52.7

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccc---ccc----ccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFE---YLH----EFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~---~l~----~~~~~~~divInatp  436 (518)
                      .|++++|+|+ ||+|.+++..++..|++|+++.|+.++.+.+.++++... ++..   ++.    ......+|++||++.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  234 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVG  234 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence            5789999997 999999999999999999999999998877665677532 2221   111    101135899999985

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.78  E-value=0.0087  Score=61.99  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=76.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHC---------CCe-EEEEeCCHHHHHHHHHHhcCcc--cccccccccCCCCccEEEEcC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR---------GAR-VIIFNRNYERAKALADAVSGEA--LHFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~---------G~~-v~i~nRt~~ka~~la~~~~~~~--~~~~~l~~~~~~~~divInat  435 (518)
                      -++.|||+|.+|+.-+.++.+.         +++ +.|++++++++++++++++...  -+++++-+  ..+.|+|+.||
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~--~~~vD~V~I~t  104 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVN--DPQVDVVDITS  104 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHH--CTTCCEEEECS
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhc--CCCCCEEEECC
Confidence            3899999999999888777653         344 5689999999999999998642  24554322  24679999999


Q ss_pred             CCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHH
Q 010101          436 AIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       436 p~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml  489 (518)
                      |.....     ++....+..+.-|+  +=+|.-      ..+++.|++.|..+.-|...-
T Consensus       105 p~~~H~-----~~~~~al~aGkhVl--~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R  157 (412)
T 4gqa_A          105 PNHLHY-----TMAMAAIAAGKHVY--CEKPLAVNEQQAQEMAQAARRAGVKTMVAFNNI  157 (412)
T ss_dssp             CGGGHH-----HHHHHHHHTTCEEE--EESCSCSSHHHHHHHHHHHHHHTCCEEEECGGG
T ss_pred             CcHHHH-----HHHHHHHHcCCCeE--eecCCcCCHHHHHHHHHHHHHhCCeeeecccee
Confidence            875432     12234455554332  335542      466777888888877665543

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=95.76  E-value=0.0087  Score=52.43  Aligned_cols=103  Identities=20%  Similarity=0.179  Sum_probs=66.4

Q ss_pred             cCCcEEEEEcc----chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCC
Q 010101          365 IAGKIFVLVGA----GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       365 l~~k~vlvlGa----Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      ++.+++.|+|+    |-+|+.++..|.+.|++|+.+|++.++.      .|... -+++++    ....|++|-++|...
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i------~G~~~~~s~~el----~~~vDlvii~vp~~~   81 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------EGLKCYRSVREL----PKDVDVIVFVVPPKV   81 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------TTEECBSSGGGS----CTTCCEEEECSCHHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE------CCeeecCCHHHh----CCCCCEEEEEeCHHH
Confidence            45689999999    9999999999999999988888774321      23222 134443    346899998887422


Q ss_pred             CCCCCCCCCChhhh--cCCCEEEEEeeCCCchHHHHHHHHCCCeeec
Q 010101          440 EPNSDQSPVPKEAL--KAYELVFDAVYTPRNTRLLREAAEVGATVVS  484 (518)
Q Consensus       440 ~~~~~~~~~~~~~l--~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~  484 (518)
                      .+.     +-.+.+  ..+.++++...  ..-.+.+.|+++|.++++
T Consensus        82 v~~-----v~~~~~~~g~~~i~~~~~~--~~~~l~~~a~~~Gi~~ig  121 (138)
T 1y81_A           82 GLQ-----VAKEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSF  121 (138)
T ss_dssp             HHH-----HHHHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEEC
T ss_pred             HHH-----HHHHHHHcCCCEEEEcCcc--HHHHHHHHHHHCCCEEEc
Confidence            111     111222  22344544422  356788999999999986

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.75  E-value=0.012  Score=57.81  Aligned_cols=70  Identities=16%  Similarity=0.201  Sum_probs=48.8

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHH--hcCccc--cccc---ccccCCCCccEEEE
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN-----YERAKALADA--VSGEAL--HFEY---LHEFFPEKGMILAN  433 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt-----~~ka~~la~~--~~~~~~--~~~~---l~~~~~~~~divIn  433 (518)
                      .++++|+|+ |+.|++++.+|.+.|++|+++.|+     +++++.+.+.  -+...+  ++.+   +.. ...++|+||+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~-~~~~~d~vi~   82 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVD-ALKQVDVVIS   82 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHH-HHTTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHH-HHhCCCEEEE
Confidence            367999997 889999999999999999999998     5666554321  122211  2222   222 3456899999


Q ss_pred             cCCC
Q 010101          434 ASAI  437 (518)
Q Consensus       434 atp~  437 (518)
                      +++.
T Consensus        83 ~a~~   86 (313)
T 1qyd_A           83 ALAG   86 (313)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8864

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.74  E-value=0.015  Score=58.96  Aligned_cols=71  Identities=24%  Similarity=0.307  Sum_probs=53.0

Q ss_pred             CC--cEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-ccccc------ccccCCCCccEEEEc
Q 010101          366 AG--KIFVLVGA-GGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFEY------LHEFFPEKGMILANA  434 (518)
Q Consensus       366 ~~--k~vlvlGa-Gg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~~------l~~~~~~~~divIna  434 (518)
                      .|  ++++|.|+ ||+|++++..++..|+ +|+++.|+.++.+.+.++++... ++..+      +.+......|++||+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~  237 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDN  237 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEEC
Confidence            46  89999998 9999999999999999 99999999998877766677532 22211      111011258999999


Q ss_pred             CC
Q 010101          435 SA  436 (518)
Q Consensus       435 tp  436 (518)
                      +.
T Consensus       238 ~G  239 (357)
T 2zb4_A          238 VG  239 (357)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.73  E-value=0.01  Score=57.73  Aligned_cols=44  Identities=34%  Similarity=0.496  Sum_probs=37.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALA  407 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la  407 (518)
                      .+.+|+++|.|+ ||.|++++..|++.|++|.+++|+.++++++.
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   57 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN   57 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh
Confidence            356899999988 68999999999999999999999998876653

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.72  E-value=0.01  Score=56.84  Aligned_cols=46  Identities=22%  Similarity=0.370  Sum_probs=38.0

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALAD  408 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~  408 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.++..+
T Consensus        10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   56 (265)
T 1h5q_A           10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTE   56 (265)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHH
Confidence            3577899999987 689999999999999999999997665544433

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.72  E-value=0.023  Score=56.70  Aligned_cols=68  Identities=12%  Similarity=0.094  Sum_probs=47.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH---hcC----cc----cc-cccccccCCCCccEEEEcC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADA---VSG----EA----LH-FEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~---~~~----~~----~~-~~~l~~~~~~~~divInat  435 (518)
                      .+++|||+|.+|.+++..|++.|.+|++++|+. . +++.+.   +..    ..    +. ..+..+ ....+|+||-|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~-~~~~~DlVilav   79 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-Y-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAE-LETKPDCTLLCI   79 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-H-HHHHHHCEEEEETTTCCEEECCSCEESCGGG-CSSCCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-H-HHHHhCCcEEeecCCCcEEEeeeeeECCHHH-cCCCCCEEEEec
Confidence            579999999999999999999999999999986 2 555443   110    00    00 122222 233789999999


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      +..
T Consensus        80 K~~   82 (320)
T 3i83_A           80 KVV   82 (320)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            864

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=95.71  E-value=0.011  Score=56.74  Aligned_cols=44  Identities=16%  Similarity=0.293  Sum_probs=38.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH--HHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER--AKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k--a~~la~~~  410 (518)
                      +|+++|.|+ ||.|++++..|++.|++|++++|+.++  ++++++.+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   48 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLI   48 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHH
Confidence            578999987 689999999999999999999999887  77777665

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.71  E-value=0.013  Score=59.12  Aligned_cols=74  Identities=12%  Similarity=0.140  Sum_probs=53.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------c-cccc-ccccccCCCCccEEEEcCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSG-------E-ALHF-EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~-------~-~~~~-~~l~~~~~~~~divInatp  436 (518)
                      ..++.|+|+|.+|.++++.|+..|. +|++++++.++++..+..+..       . .+.. .++.+ ...++|+||.+..
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~e-a~~~aDiVi~a~g   87 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEA-ALTGADCVIVTAG   87 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHH-HHTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHH-HhCCCCEEEEccC
Confidence            3589999999999999999999998 999999999888775433321       0 1111 34432 3567999999985


Q ss_pred             CCCCC
Q 010101          437 IGMEP  441 (518)
Q Consensus       437 ~g~~~  441 (518)
                      .+..|
T Consensus        88 ~p~~~   92 (331)
T 1pzg_A           88 LTKVP   92 (331)
T ss_dssp             CSSCT
T ss_pred             CCCCC
Confidence            54333

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.66  E-value=0.022  Score=57.22  Aligned_cols=74  Identities=16%  Similarity=0.180  Sum_probs=53.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc-----cccc-cccccCCCCccEEEEcCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA-----LHFE-YLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~-----~~~~-~l~~~~~~~~divInatp~g  438 (518)
                      ..++.|+|+|.+|.+.++.|+..+.  +|.+++++.++++..+.++....     ..+. +..+ ...++|+||.+.+.+
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~-a~~~aDvVii~ag~~   87 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYS-DAKDADLVVITAGAP   87 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGG-GGGGCSEEEECCCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHH-HhCCCCEEEEcCCCC
Confidence            4689999999999999999987775  89999999999988777664321     1111 1122 356799999998765


Q ss_pred             CCC
Q 010101          439 MEP  441 (518)
Q Consensus       439 ~~~  441 (518)
                      ..|
T Consensus        88 ~k~   90 (326)
T 2zqz_A           88 QKP   90 (326)
T ss_dssp             ---
T ss_pred             CCC
Confidence            544

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.65  E-value=0.024  Score=56.71  Aligned_cols=70  Identities=23%  Similarity=0.245  Sum_probs=52.2

Q ss_pred             CCcEEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccc--c----cccc-CCCCccEEEEcCC
Q 010101          366 AGKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFE--Y----LHEF-FPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlG-aGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~--~----l~~~-~~~~~divInatp  436 (518)
                      .|++++|+| +|++|.+++..++..|++|+++.|+.++.+ ++++++... ++..  +    +.+. ....+|+++|++.
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g  226 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLK-IAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVG  226 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCC
Confidence            578999999 799999999999999999999999998876 667777542 2221  1    1110 1235899999885

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=95.65  E-value=0.013  Score=60.15  Aligned_cols=109  Identities=15%  Similarity=0.122  Sum_probs=69.6

Q ss_pred             cEEEEEccc-hhHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          368 KIFVLVGAG-GAGRALAFGAKSR-GAR-VIIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       368 k~vlvlGaG-g~araia~~L~~~-G~~-v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      -++.|||+| .+++..+.+|.+. +++ +.|++|+.++++++++.++... -+++++-+  ..+.|+|+.+||.....  
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~--~~~vD~V~i~tp~~~H~--   78 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQ--HVQMDAVYIASPHQFHC--   78 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHH--HSCCSEEEECSCGGGHH--
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHc--CCCCCEEEEcCCcHHHH--
Confidence            479999999 8999999988876 455 5699999999999999987642 24444321  13579999999865321  


Q ss_pred             CCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeecc
Q 010101          444 DQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSG  485 (518)
Q Consensus       444 ~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G  485 (518)
                         ++....+..+.-|+  +=+|.-      ..+.+.|++.|..+.-|
T Consensus        79 ---~~~~~al~aGk~Vl--~EKP~a~~~~e~~~l~~~a~~~g~~~~v~  121 (387)
T 3moi_A           79 ---EHVVQASEQGLHII--VEKPLTLSRDEADRMIEAVERAGVHLVVG  121 (387)
T ss_dssp             ---HHHHHHHHTTCEEE--ECSCCCSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred             ---HHHHHHHHCCCcee--eeCCccCCHHHHHHHHHHHHHhCCeEEEE
Confidence               11223344443332  224421      34556666666654443

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.65  E-value=0.027  Score=56.50  Aligned_cols=69  Identities=16%  Similarity=0.119  Sum_probs=52.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------c-cccc-ccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSG-------E-ALHF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~-------~-~~~~-~~l~~~~~~~~divInatp~  437 (518)
                      .++.|+|+|.+|.++++.|+..|. +|.+++++.++++..+..+..       . .+.. .++ + ...++|+||.+.+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~-al~~aD~Vi~a~g~   82 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-D-DLAGADVVIVTAGF   82 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-G-GGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-H-HhCCCCEEEEeCCC
Confidence            589999999999999999999998 999999999888766554432       1 1111 333 2 45789999999854


Q ss_pred             C
Q 010101          438 G  438 (518)
Q Consensus       438 g  438 (518)
                      .
T Consensus        83 p   83 (322)
T 1t2d_A           83 T   83 (322)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.64  E-value=0.022  Score=56.85  Aligned_cols=72  Identities=13%  Similarity=0.109  Sum_probs=52.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCc------c--ccc-ccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGE------A--LHF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~------~--~~~-~~l~~~~~~~~divInatp~  437 (518)
                      .++.|+|+|.+|.++++.|+..|. +|.+++++.++++..+.++...      .  +.. .+. + ...++|+||.+.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~-a~~~aD~Vi~a~g~   80 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-A-DTANSDVIVVTSGA   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-G-GGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-H-HHCCCCEEEEcCCC
Confidence            479999999999999999999997 9999999998887766555321      1  111 333 2 35779999999876


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      +..|
T Consensus        81 p~~~   84 (309)
T 1ur5_A           81 PRKP   84 (309)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            5554

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=95.64  E-value=0.018  Score=56.16  Aligned_cols=47  Identities=38%  Similarity=0.659  Sum_probs=39.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.+++|+ ++.+++++++
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~   74 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEI   74 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHH
Confidence            4578999999987 689999999999999999999987 4455555554

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.63  E-value=0.027  Score=56.15  Aligned_cols=71  Identities=13%  Similarity=0.163  Sum_probs=51.7

Q ss_pred             EEEEEccchhHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhcCc------c--ccc-ccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSR--GARVIIFNRNYERAKALADAVSGE------A--LHF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~--G~~v~i~nRt~~ka~~la~~~~~~------~--~~~-~~l~~~~~~~~divInatp~  437 (518)
                      ++.|+|+|.+|.+++..|+..  |.+|++++|+.++++.++..+...      .  +.. .+..  ...++|+||.|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~--~l~~aDvViiav~~   79 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYA--DTANSDIVIITAGL   79 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGG--GGTTCSEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHH--HHCCCCEEEEeCCC
Confidence            689999999999999999985  569999999999888776443211      1  111 2332  25679999999986


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      ...|
T Consensus        80 p~~~   83 (310)
T 1guz_A           80 PRKP   83 (310)
T ss_dssp             CCCT
T ss_pred             CCCC
Confidence            5443

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=95.62  E-value=0.46  Score=45.15  Aligned_cols=126  Identities=12%  Similarity=0.062  Sum_probs=80.0

Q ss_pred             EEEeecCCC------HHHHHHHHHHHHhhCCCEEEEEeccCCCCcHHHHHHHhcCCCCcEEEEeecCCCCCC-CCCCcHH
Q 010101           11 VCTQLECET------TEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKS-SDEACKN   83 (518)
Q Consensus        11 icv~l~~~~------~~~~~~~~~~~~~~g~D~vElRlD~l~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~-~~~~~~~   83 (518)
                      +.|+.....      ...+...++.+...|+..++.  .    ++ +.+..+++.+++|+|--.|. .-||. +-.+ + 
T Consensus        20 livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~--~----~~-~~i~~ir~~v~~Pvig~~k~-d~~~~~~~I~-~-   89 (232)
T 3igs_A           20 LIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRI--E----GI-DNLRMTRSLVSVPIIGIIKR-DLDESPVRIT-P-   89 (232)
T ss_dssp             EEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEE--E----SH-HHHHHHHTTCCSCEEEECBC-CCSSCCCCBS-C-
T ss_pred             EEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEE--C----CH-HHHHHHHHhcCCCEEEEEee-cCCCcceEeC-c-
Confidence            445555554      666666666666789999864  2    22 47889999999999765554 23442 2222 1 


Q ss_pred             HHHHHHHHHhhcCCcEEEEecCC--CCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEE
Q 010101           84 TCLQVLRRALDLDVEFVEMDYEV--ASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKL  158 (518)
Q Consensus        84 ~~~~ll~~~~~~g~~yvDiEl~~--~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKi  158 (518)
                       +.+-+..+.+.|+|+|=+....  .++.+.++.+ .++.+..++++.|+.       ++    .+++.+.|+|++-+
T Consensus        90 -~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~-------ee----a~~a~~~Gad~Ig~  155 (232)
T 3igs_A           90 -FLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSV-------DD----GLACQRLGADIIGT  155 (232)
T ss_dssp             -SHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSH-------HH----HHHHHHTTCSEEEC
T ss_pred             -cHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCH-------HH----HHHHHhCCCCEEEE
Confidence             2223456778899999877653  2234445544 445678889888843       23    45677899999953

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=95.61  E-value=0.014  Score=56.70  Aligned_cols=39  Identities=33%  Similarity=0.502  Sum_probs=35.1

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      ++++|+++|.|+ ||.|++++..|++.|++|++++|+.++
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   42 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVA   42 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSC
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchh
Confidence            467899999988 689999999999999999999998653

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.61  E-value=0.018  Score=56.66  Aligned_cols=40  Identities=28%  Similarity=0.457  Sum_probs=35.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      ..+++|++||.|+ ||.|++++..|++.|++|.+++|+.++
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG   83 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            3478999999988 689999999999999999999998664

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.61  E-value=0.0018  Score=61.56  Aligned_cols=69  Identities=13%  Similarity=0.101  Sum_probs=46.9

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhcCcc--cccc---cccccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRG-ARVIIFNRNYERAKALADAVSGEA--LHFE---YLHEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G-~~v~i~nRt~~ka~~la~~~~~~~--~~~~---~l~~~~~~~~divInatp  436 (518)
                      ..++++|.|+ |+.|++++..|.+.| ++|+++.|+.++++++... +...  .++.   ++.. ...+.|+|||+.+
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~-~~~~~~~Dl~d~~~~~~-~~~~~D~vv~~a~   97 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPT-NSQIIMGDVLNHAALKQ-AMQGQDIVYANLT   97 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCT-TEEEEECCTTCHHHHHH-HHTTCSEEEEECC
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccC-CcEEEEecCCCHHHHHH-HhcCCCEEEEcCC
Confidence            4578999995 889999999999999 6999999998876443211 1111  1221   2222 2356799998764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.60  E-value=0.018  Score=56.86  Aligned_cols=44  Identities=20%  Similarity=0.203  Sum_probs=37.5

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          363 SPIAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       363 ~~l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      ..+++|+++|.|++   |.|++++..|++.|++|.+++|+.+..+.+
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~   72 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRV   72 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            35789999999985   999999999999999999999997544333

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.59  E-value=0.035  Score=56.58  Aligned_cols=70  Identities=23%  Similarity=0.317  Sum_probs=52.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-cccc--c----ccc---cCCCCccEEEEc
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFE--Y----LHE---FFPEKGMILANA  434 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~--~----l~~---~~~~~~divIna  434 (518)
                      .|.+|||+|+|++|.+++..++..|+ +|+++.++.++.+ +++++|... +...  +    +.+   .....+|++|++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~-~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~  260 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRR-LAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIEC  260 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHH-HHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH-HHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEEC
Confidence            47899999999999999998899999 8999999988864 777888643 2221  1    111   111368999999


Q ss_pred             CC
Q 010101          435 SA  436 (518)
Q Consensus       435 tp  436 (518)
                      ++
T Consensus       261 ~G  262 (370)
T 4ej6_A          261 AG  262 (370)
T ss_dssp             SC
T ss_pred             CC
Confidence            86

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=95.56  E-value=0.011  Score=58.50  Aligned_cols=40  Identities=23%  Similarity=0.239  Sum_probs=36.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-----C-CeEEEEeCCHHHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-----G-ARVIIFNRNYERAKALAD  408 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-----G-~~v~i~nRt~~ka~~la~  408 (518)
                      .++.|||+|.+|.+++..|.+.     | .+|++++| .++++++.+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~   54 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRA   54 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHh
Confidence            4799999999999999999998     9 89999999 888888876

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.56  E-value=0.0074  Score=59.83  Aligned_cols=36  Identities=25%  Similarity=0.263  Sum_probs=32.6

Q ss_pred             CcEEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          367 GKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       367 ~k~vlvlG-aGg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      .+++.||| +|.+|.+++..|.+.|++|++++|+.+.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~   57 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA   57 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc
Confidence            46899999 9999999999999999999999998653

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.56  E-value=0.02  Score=57.23  Aligned_cols=72  Identities=13%  Similarity=0.099  Sum_probs=49.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC------ccccc--ccccccCCCCccEEEEcCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSG------EALHF--EYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~------~~~~~--~~l~~~~~~~~divInatp~g  438 (518)
                      ++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+.++..      ....+  .+..+ ...++|+||.+.+..
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~-a~~~aDvVii~ag~~   80 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYG-PTEDSDVCIITAGLP   80 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSG-GGTTCSEEEECCCC-
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHH-HhCCCCEEEECCCCC
Confidence            68999999999999999998886  899999999888766544431      01111  12222 457799999987654


Q ss_pred             CCC
Q 010101          439 MEP  441 (518)
Q Consensus       439 ~~~  441 (518)
                      -.|
T Consensus        81 ~kp   83 (314)
T 3nep_X           81 RSP   83 (314)
T ss_dssp             ---
T ss_pred             CCC
Confidence            444

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.56  E-value=0.014  Score=55.44  Aligned_cols=46  Identities=24%  Similarity=0.442  Sum_probs=38.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIF-NRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~-nRt~~ka~~la~~~  410 (518)
                      +++++++|.|+ ||.|++++..|.+.|++|+++ .|+.++.+++.+.+
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~   50 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEF   50 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHH
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHH
Confidence            45789999987 689999999999999999988 78877777766554

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=95.55  E-value=0.014  Score=59.31  Aligned_cols=110  Identities=20%  Similarity=0.133  Sum_probs=72.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCcc-cccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-GARV-IIFNRNYERAKALADAVSGEA-LHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-G~~v-~i~nRt~~ka~~la~~~~~~~-~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      -++.|||+|.+|+..+.+|.+. +++| .|++|+.++++ .++.++... -+++++-+  ..+.|+|+.|||.....   
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-~a~~~g~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~---   79 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKRE-AAAQKGLKIYESYEAVLA--DEKVDAVLIATPNDSHK---   79 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHH-HHHTTTCCBCSCHHHHHH--CTTCCEEEECSCGGGHH---
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH-HHHhcCCceeCCHHHHhc--CCCCCEEEEcCCcHHHH---
Confidence            5899999999999999998877 5664 58999999986 456666432 23444321  24689999999865321   


Q ss_pred             CCCCChhhhcCCCEEEEEeeCCC------chHHHHHHHHCCCeeeccHH
Q 010101          445 QSPVPKEALKAYELVFDAVYTPR------NTRLLREAAEVGATVVSGVE  487 (518)
Q Consensus       445 ~~~~~~~~l~~~~~v~Di~Y~P~------~T~ll~~A~~~G~~~i~G~~  487 (518)
                        ++....+..+.-|+  +=+|.      --.+++.|++.|..+.-|..
T Consensus        80 --~~~~~al~aGkhVl--~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~  124 (359)
T 3e18_A           80 --ELAISALEAGKHVV--CEKPVTMTSEDLLAIMDVAKRVNKHFMVHQN  124 (359)
T ss_dssp             --HHHHHHHHTTCEEE--EESSCCSSHHHHHHHHHHHHHHTCCEEEECG
T ss_pred             --HHHHHHHHCCCCEE--eeCCCcCCHHHHHHHHHHHHHhCCeEEEEee
Confidence              12233455554333  33443      24567788888887765544

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.55  E-value=0.023  Score=57.83  Aligned_cols=114  Identities=18%  Similarity=0.102  Sum_probs=76.9

Q ss_pred             cEEEEEccchhHH-HHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhcC-c-ccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGR-ALAFGAKSRGAR-VIIFNRNYERAKALADAVSG-E-ALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       368 k~vlvlGaGg~ar-aia~~L~~~G~~-v~i~nRt~~ka~~la~~~~~-~-~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      -++.|||+|.++. ..+.++...|++ +.|++|++++++++++.++. . +-+++++-+  ..+.|+|+.+||.....  
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~--~~~vD~V~I~tp~~~H~--  102 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILE--DENIGLIVSAAVSSERA--  102 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHT--CTTCCEEEECCCHHHHH--
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEEeCChHHHH--
Confidence            4899999998774 566667777885 77999999999999999873 2 224444322  24589999999865332  


Q ss_pred             CCCCCChhhhcCCCEEEEEeeCCC------chHHHHHHHHCCCeeeccHHHHH
Q 010101          444 DQSPVPKEALKAYELVFDAVYTPR------NTRLLREAAEVGATVVSGVEMFI  490 (518)
Q Consensus       444 ~~~~~~~~~l~~~~~v~Di~Y~P~------~T~ll~~A~~~G~~~i~G~~ml~  490 (518)
                         ++....+..+.-|+  +=+|.      --.+++.|++.|..+.-|...-.
T Consensus       103 ---~~~~~al~aGkhVl--~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~  150 (361)
T 3u3x_A          103 ---ELAIRAMQHGKDVL--VDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHF  150 (361)
T ss_dssp             ---HHHHHHHHTTCEEE--EESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHH
T ss_pred             ---HHHHHHHHCCCeEE--EeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhh
Confidence               12233455554332  33553      23577788889998887766644

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.52  E-value=0.031  Score=55.97  Aligned_cols=74  Identities=15%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC------cccccc-cccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSG------EALHFE-YLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~------~~~~~~-~l~~~~~~~~divInatp~  437 (518)
                      ..++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+..+..      ....+. +..+ ...++|+||.+.+.
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~-a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYS-DCHDADLVVICAGA   84 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHH-HhCCCCEEEECCCC
Confidence            4689999999999999999998775  899999999888765554431      011111 1122 35789999999977


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      +..|
T Consensus        85 ~~~~   88 (317)
T 3d0o_A           85 AQKP   88 (317)
T ss_dssp             CCCT
T ss_pred             CCCC
Confidence            6554

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=95.51  E-value=0.02  Score=54.65  Aligned_cols=46  Identities=26%  Similarity=0.411  Sum_probs=38.6

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHhc
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR-NYERAKALADAVS  411 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR-t~~ka~~la~~~~  411 (518)
                      .+|+++|.|+ ||.|++++..|++.|++|.+..| +.++++++++++.
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~   50 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIK   50 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            4689999987 68999999999999999888766 6788888776653

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=95.51  E-value=0.018  Score=54.56  Aligned_cols=44  Identities=20%  Similarity=0.352  Sum_probs=39.8

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC-------eEEEEeCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGA-------RVIIFNRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~-------~v~i~nRt~~ka~~la~~~  410 (518)
                      +|+++|.|+ ||.|++++..|.+.|+       +|.+++|+.++.+++.+++
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~   53 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC   53 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHH
Confidence            578999987 7899999999999999       9999999999988887766

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=95.50  E-value=0.0085  Score=61.00  Aligned_cols=122  Identities=17%  Similarity=0.111  Sum_probs=79.7

Q ss_pred             cEEEEEccchhHHH-HHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCc--ccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRA-LAFGAKSR-GARV-IIFNRNYERAKALADAVSGE--ALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       368 k~vlvlGaGg~ara-ia~~L~~~-G~~v-~i~nRt~~ka~~la~~~~~~--~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      -++.|||+|.+|+. .+.+|.+. +++| .|++|++++++++++.++..  +-+++++-+  ..+.|+|+.+||..... 
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~--~~~vD~V~i~tp~~~H~-   82 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLN--QVPLDAVVMAGPPQLHF-   82 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHH--HSCCSEEEECSCHHHHH-
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCCCEEEEcCCcHHHH-
Confidence            58999999999984 78888876 5665 59999999999999887532  224444321  13569999999864322 


Q ss_pred             CCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHHHHHHHHHHH
Q 010101          443 SDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVEMFIRQALGQFR  498 (518)
Q Consensus       443 ~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml~~Qa~~qf~  498 (518)
                          ++....+..+.-|+  +=+|.-      -.+++.|++.|..+.-|...-..-+....+
T Consensus        83 ----~~~~~al~aGkhVl--~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k  138 (359)
T 3m2t_A           83 ----EMGLLAMSKGVNVF--VEKPPCATLEELETLIDAARRSDVVSGVGMNFKFARPVRQLR  138 (359)
T ss_dssp             ----HHHHHHHHTTCEEE--ECSCSCSSHHHHHHHHHHHHHHTCCEEECCHHHHCHHHHHHH
T ss_pred             ----HHHHHHHHCCCeEE--EECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCcHHHHHHH
Confidence                12233455554333  235642      347778888999888777766544444333

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.50  E-value=0.018  Score=55.50  Aligned_cols=75  Identities=25%  Similarity=0.246  Sum_probs=51.1

Q ss_pred             ccCCcEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhcC-cc--ccccc---cccc------CC
Q 010101          364 PIAGKIFVLVGA---GGAGRALAFGAKSRGARVIIFNRNYE---RAKALADAVSG-EA--LHFEY---LHEF------FP  425 (518)
Q Consensus       364 ~l~~k~vlvlGa---Gg~araia~~L~~~G~~v~i~nRt~~---ka~~la~~~~~-~~--~~~~~---l~~~------~~  425 (518)
                      .+++|+++|.|+   ||.|++++..|++.|++|++++|+.+   .++++.+..+. ..  .++.+   +...      ..
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF   84 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            467899999998   69999999999999999999999975   45555554432 11  11111   1110      11


Q ss_pred             CCccEEEEcCCCC
Q 010101          426 EKGMILANASAIG  438 (518)
Q Consensus       426 ~~~divInatp~g  438 (518)
                      ...|+|||+....
T Consensus        85 g~iD~lv~~Ag~~   97 (261)
T 2wyu_A           85 GGLDYLVHAIAFA   97 (261)
T ss_dssp             SSEEEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3579999987643

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=95.49  E-value=0.016  Score=58.14  Aligned_cols=45  Identities=31%  Similarity=0.386  Sum_probs=36.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHHh
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN-----YERAKALADAV  410 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt-----~~ka~~la~~~  410 (518)
                      .+|+++|.|+ ||.|++++..|.+.|++|++..|+     .++++++++.+
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~   54 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFA   54 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHH
Confidence            4789999987 789999999999999999987665     56666666543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.48  E-value=0.014  Score=57.32  Aligned_cols=70  Identities=20%  Similarity=0.254  Sum_probs=46.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------HHHHHHHHHH--hcCccc--cccc---ccccCCCCccEEE
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN------YERAKALADA--VSGEAL--HFEY---LHEFFPEKGMILA  432 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt------~~ka~~la~~--~~~~~~--~~~~---l~~~~~~~~divI  432 (518)
                      .++++|+|+ |+.|++++.+|.+.|++|+++.|+      +++++.+.+.  -+.+.+  ++.+   +.. ...++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~-~~~~~d~vi   82 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVE-AVKNVDVVI   82 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHH-HHHTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHH-HHcCCCEEE
Confidence            467999997 889999999999999999999997      4455443221  122211  2222   222 234579999


Q ss_pred             EcCCC
Q 010101          433 NASAI  437 (518)
Q Consensus       433 natp~  437 (518)
                      ++++.
T Consensus        83 ~~a~~   87 (308)
T 1qyc_A           83 STVGS   87 (308)
T ss_dssp             ECCCG
T ss_pred             ECCcc
Confidence            98753

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=95.47  E-value=0.012  Score=60.03  Aligned_cols=114  Identities=20%  Similarity=0.199  Sum_probs=73.4

Q ss_pred             cEEEEEccchhHHHHHHHHHH--------CCCe-EEEEeCCHHHHHHHHHHhcCcc--cccccccccCCCCccEEEEcCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKS--------RGAR-VIIFNRNYERAKALADAVSGEA--LHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~--------~G~~-v~i~nRt~~ka~~la~~~~~~~--~~~~~l~~~~~~~~divInatp  436 (518)
                      -++.|||+|.+|+.=+.++..        .+++ +.|++|+.+++++++++++...  -+++++-+  ..+.|+|+.|||
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~--~~~iDaV~IatP  103 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIA--DPEVDVVSVTTP  103 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHH--CTTCCEEEECSC
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhc--CCCCcEEEECCC
Confidence            489999999999865555433        2454 6799999999999999998642  24555322  246899999999


Q ss_pred             CCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHHH
Q 010101          437 IGMEPNSDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVEMFI  490 (518)
Q Consensus       437 ~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml~  490 (518)
                      ......     +....+..+.-|+  +=+|.-      -.+++.|++.|..+.-|..+-.
T Consensus       104 ~~~H~~-----~a~~al~aGkhVl--~EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~  156 (393)
T 4fb5_A          104 NQFHAE-----MAIAALEAGKHVW--CEKPMAPAYADAERMLATAERSGKVAALGYNYIQ  156 (393)
T ss_dssp             GGGHHH-----HHHHHHHTTCEEE--ECSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGG
T ss_pred             hHHHHH-----HHHHHHhcCCeEE--EccCCcccHHHHHHhhhhHHhcCCcccccccccc
Confidence            764321     2233455544332  234542      4577788888888776765443

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.46  E-value=0.014  Score=57.63  Aligned_cols=70  Identities=13%  Similarity=0.157  Sum_probs=48.0

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH------HHHHHHHHH--hcCccc--cccc---ccccCCCCccEEE
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY------ERAKALADA--VSGEAL--HFEY---LHEFFPEKGMILA  432 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~------~ka~~la~~--~~~~~~--~~~~---l~~~~~~~~divI  432 (518)
                      .++++|+|+ |+.|++++.+|.+.|++|+++.|+.      ++++.+.+.  -+...+  ++.+   +.. ...++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~-a~~~~d~vi   82 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVS-VLKQVDIVI   82 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHH-HHTTCSEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHH-HHcCCCEEE
Confidence            468999997 8899999999999999999999985      455444321  122221  2222   222 345689999


Q ss_pred             EcCCC
Q 010101          433 NASAI  437 (518)
Q Consensus       433 natp~  437 (518)
                      ++.+.
T Consensus        83 ~~a~~   87 (321)
T 3c1o_A           83 SALPF   87 (321)
T ss_dssp             ECCCG
T ss_pred             ECCCc
Confidence            98753

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.45  E-value=0.031  Score=57.03  Aligned_cols=70  Identities=24%  Similarity=0.290  Sum_probs=52.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-ccccc---ccccCCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEY---LHEFFPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~---l~~~~~~~~divInatp~  437 (518)
                      .|.+|||+|+|++|.+++..++..|++|+++.++.++.+. +++++... +...+   +.. ....+|++|++++.
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~-a~~lGa~~vi~~~~~~~~~~-~~~g~Dvvid~~g~  267 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREA-AKALGADEVVNSRNADEMAA-HLKSFDFILNTVAA  267 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHHTCSEEEETTCHHHHHT-TTTCEEEEEECCSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHcCCcEEeccccHHHHHH-hhcCCCEEEECCCC
Confidence            4789999999999999999888899999999999888754 45677543 22211   112 12468999999863

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.45  E-value=0.0087  Score=59.65  Aligned_cols=43  Identities=16%  Similarity=0.212  Sum_probs=35.7

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALAD  408 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~  408 (518)
                      .++++||.|+ |+.|++++..|.+.|++|++++|+.++.++..+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~   47 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIA   47 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHH
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHH
Confidence            3579999996 889999999999999999999998665544433

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.45  E-value=0.015  Score=58.09  Aligned_cols=47  Identities=32%  Similarity=0.610  Sum_probs=41.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC----------HHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN----------YERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt----------~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+          .++++++++++
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~   81 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEI   81 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHH
Confidence            477899999987 689999999999999999999998          67777777665

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=95.44  E-value=0.019  Score=54.34  Aligned_cols=44  Identities=25%  Similarity=0.579  Sum_probs=37.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVII-FNRNYERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i-~nRt~~ka~~la~~~  410 (518)
                      ||+++|.|+ ||.|++++..|.+.|++|++ .+|+.++.+++.+++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~   46 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI   46 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            478999987 68999999999999999888 589998888776654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.43  E-value=0.023  Score=57.78  Aligned_cols=70  Identities=23%  Similarity=0.179  Sum_probs=52.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-ccc--ccc----cc-cCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHF--EYL----HE-FFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~--~~l----~~-~~~~~~divInatp  436 (518)
                      .|++|+|+|+|++|.+++..++..|++|+++.++.++.+. ++++|... ++.  +++    .+ ..-..+|+++++++
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~-~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g  266 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDR-AFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG  266 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHH-HHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC
Confidence            4789999999999999999999999999999999988755 67777643 221  111    11 01236899999986

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=95.43  E-value=0.017  Score=55.91  Aligned_cols=49  Identities=16%  Similarity=0.283  Sum_probs=40.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR---NYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR---t~~ka~~la~~~~  411 (518)
                      .++++|+++|.|+ ||.|++++..|++.|++|.++.|   +.++++++++++.
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~   59 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELE   59 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHH
Confidence            4578999999987 68999999999999999999866   4567777777663

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.42  E-value=0.0035  Score=62.56  Aligned_cols=40  Identities=13%  Similarity=0.165  Sum_probs=35.6

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      ..++++++||.|+ |+.|++++..|.+.|++|++++|+.+.
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~   56 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATG   56 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSS
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence            5678899999998 889999999999999999999997543

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=95.40  E-value=0.022  Score=55.23  Aligned_cols=48  Identities=23%  Similarity=0.425  Sum_probs=39.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFN-RNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~n-Rt~~ka~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|.++. |+.++++++++++
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~   63 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEI   63 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            3578999999988 5899999999999999988865 5677777776665

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.39  E-value=0.011  Score=57.55  Aligned_cols=47  Identities=26%  Similarity=0.369  Sum_probs=39.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++.+.+
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~   78 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQ   78 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999987 68999999999999999999999987666665443

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.39  E-value=0.051  Score=54.63  Aligned_cols=74  Identities=9%  Similarity=0.051  Sum_probs=54.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc-c------cc-cccccccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE-A------LH-FEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~-~------~~-~~~l~~~~~~~~divInat  435 (518)
                      ..+++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+.++... .      +. -.+.+  ...++|+||-+.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~--~~~daDiVIita   97 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS--VSAGSKLVVITA   97 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC--SCSSCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH--HhCCCCEEEEeC
Confidence            45789999999999999999998886  8999999999888876555311 0      11 12332  357899999877


Q ss_pred             CCCCCC
Q 010101          436 AIGMEP  441 (518)
Q Consensus       436 p~g~~~  441 (518)
                      +..-.|
T Consensus        98 G~p~kp  103 (330)
T 3ldh_A           98 GARQQE  103 (330)
T ss_dssp             SCCCCS
T ss_pred             CCCCCC
Confidence            654444

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=95.36  E-value=0.014  Score=53.78  Aligned_cols=69  Identities=23%  Similarity=0.288  Sum_probs=49.0

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--cccc---ccccC--CCCccEEEEcCCCC
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFEY---LHEFF--PEKGMILANASAIG  438 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~~---l~~~~--~~~~divInatp~g  438 (518)
                      |+++|.|+ ||.|++++..|.+.  +|++++|+.++.+++.+.++...+  ++.+   +....  ....|+|||+....
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~   77 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGARALPADLADELEAKALLEEAGPLDLLVHAVGKA   77 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTCEECCCCTTSHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccCcEEEeeCCCHHHHHHHHHhcCCCCEEEECCCcC
Confidence            47899987 78999999999987  999999999999888876643211  2211   11100  12689999987543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.35  E-value=0.03  Score=57.60  Aligned_cols=71  Identities=28%  Similarity=0.287  Sum_probs=52.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcccccc--cc-c----cc-CCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFE--YL-H----EF-FPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~~--~l-~----~~-~~~~~divInatp  436 (518)
                      .|.+|+|+|+|++|.+++..++..|+ +|+.++|+.++.+ ++++++...+...  +. .    +. .-..+|++|++++
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~-~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g  263 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLK-LLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVG  263 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHH-HHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH-HHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence            47899999999999999988888899 9999999998864 5667776433221  11 1    10 1125899999986


Q ss_pred             C
Q 010101          437 I  437 (518)
Q Consensus       437 ~  437 (518)
                      .
T Consensus       264 ~  264 (398)
T 2dph_A          264 F  264 (398)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=95.34  E-value=0.024  Score=56.45  Aligned_cols=47  Identities=28%  Similarity=0.400  Sum_probs=39.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------HHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN------------YERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt------------~~ka~~la~~~  410 (518)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+            .++++++++.+
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLV  102 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHH
Confidence            467899999987 689999999999999999999876            67777766554

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.34  E-value=0.042  Score=56.46  Aligned_cols=71  Identities=25%  Similarity=0.196  Sum_probs=52.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCccccccc-------cccc-CCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEY-------LHEF-FPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~-------l~~~-~~~~~divInatp  436 (518)
                      .|.+|+|+|+|++|.+++..++..|+ +|+.++++.+|.+ +++++|...+...+       +.+. ....+|++|+++.
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~-~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G  263 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLA-HAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  263 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHH-HHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence            47899999999999999988888999 8999999998864 55778765333221       1110 1135899999986


Q ss_pred             C
Q 010101          437 I  437 (518)
Q Consensus       437 ~  437 (518)
                      .
T Consensus       264 ~  264 (398)
T 1kol_A          264 F  264 (398)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.34  E-value=0.017  Score=58.17  Aligned_cols=40  Identities=25%  Similarity=0.367  Sum_probs=35.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD  408 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~  408 (518)
                      .++.|||+|.+|.+++..|++.|.+|++++|+ ++.+++.+
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~   43 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQT   43 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHH
Confidence            57999999999999999999999999999996 66666653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=95.34  E-value=0.02  Score=55.82  Aligned_cols=48  Identities=31%  Similarity=0.556  Sum_probs=38.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH-HHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER-AKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k-a~~la~~~  410 (518)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++ ++++++.+
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   74 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAI   74 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHH
Confidence            3467899999987 689999999999999999999998654 45554443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.33  E-value=0.015  Score=58.40  Aligned_cols=71  Identities=14%  Similarity=0.076  Sum_probs=47.1

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH----HHHHHHHHHh--cCcc--ccccc---ccccCCC--CccEE
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY----ERAKALADAV--SGEA--LHFEY---LHEFFPE--KGMIL  431 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~----~ka~~la~~~--~~~~--~~~~~---l~~~~~~--~~div  431 (518)
                      ..++|+|+|+ |..|++++..|.+.|++|+++.|+.    ++++.+.+..  +...  .++.+   +.. ...  ++|+|
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~-~~~~~~~d~V   87 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEK-ILKEHEIDIV   87 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHH-HHHHTTCCEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHH-HHhhCCCCEE
Confidence            3578999998 8899999999999999999999976    5555433221  2221  12222   222 233  68999


Q ss_pred             EEcCCC
Q 010101          432 ANASAI  437 (518)
Q Consensus       432 Inatp~  437 (518)
                      |++.+.
T Consensus        88 i~~a~~   93 (346)
T 3i6i_A           88 VSTVGG   93 (346)
T ss_dssp             EECCCG
T ss_pred             EECCch
Confidence            988754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.32  E-value=0.023  Score=57.17  Aligned_cols=69  Identities=16%  Similarity=0.160  Sum_probs=51.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccc--cc----cccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFE--YL----HEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~--~l----~~~~~~~~divInatp  436 (518)
                      .|++++|+|+|++|.+++..++..|++|+.+.|+.++.+.+ ++++... ++..  ++    .+.. ..+|++|++++
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~~~d~~~~~~~~~~~~~~-~~~d~vid~~g  239 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA-KELGADLVVNPLKEDAAKFMKEKV-GGVHAAVVTAV  239 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEECTTTSCHHHHHHHHH-SSEEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHCCCCEEecCCCccHHHHHHHHh-CCCCEEEECCC
Confidence            47899999999999999999999999999999999887654 5677542 2221  11    1101 36899999985

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=95.32  E-value=0.027  Score=62.77  Aligned_cols=39  Identities=23%  Similarity=0.180  Sum_probs=36.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      ++|.|||+|-||.+++..|++.|++|++++|+++++++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~  351 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  351 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            579999999999999999999999999999999987764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.32  E-value=0.026  Score=55.60  Aligned_cols=46  Identities=26%  Similarity=0.311  Sum_probs=37.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN--YERAKALADA  409 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt--~~ka~~la~~  409 (518)
                      .+++|++||.|+ ||.|++++..|++.|++|.++.|+  .++++++.+.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~   94 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKAL   94 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHH
Confidence            467899999988 689999999999999999999887  3445555443

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.32  E-value=0.025  Score=57.24  Aligned_cols=71  Identities=15%  Similarity=0.211  Sum_probs=51.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc-----cccc-ccccccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE-----ALHF-EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~-----~~~~-~~l~~~~~~~~divInatp  436 (518)
                      .+++|.|+|+ |.+|.++++.+..+|.  +|.+++++.++++..+.++...     .+.+ .+..+ ...++|+||.+..
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~-al~dADvVvitaG   85 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKE-ALTDAKYIVSSGG   85 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHH-HHTTEEEEEECCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHH-HhCCCCEEEEccC
Confidence            4679999998 9999999999999985  8999999999888765554311     1111 12222 3567999998754


Q ss_pred             C
Q 010101          437 I  437 (518)
Q Consensus       437 ~  437 (518)
                      .
T Consensus        86 ~   86 (343)
T 3fi9_A           86 A   86 (343)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.30  E-value=0.02  Score=58.49  Aligned_cols=71  Identities=20%  Similarity=0.199  Sum_probs=53.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-cccc----cc----cccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFE----YL----HEFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~----~l----~~~~~~~~divInat  435 (518)
                      .|.+|+|+|+|++|.+++..++..|+ +|+.++++.+|.+ +++++|... +...    ++    .+.....+|++|+++
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~-~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~  271 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE-TAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECI  271 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHH-HHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH-HHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECC
Confidence            47899999999999999998889999 8999999998875 778888643 2222    11    111123689999998


Q ss_pred             CC
Q 010101          436 AI  437 (518)
Q Consensus       436 p~  437 (518)
                      +.
T Consensus       272 g~  273 (378)
T 3uko_A          272 GN  273 (378)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.30  E-value=0.0094  Score=61.54  Aligned_cols=116  Identities=16%  Similarity=0.111  Sum_probs=76.5

Q ss_pred             CcEEEEEccch---hHHHHHHHHHHCC-CeEE--EEeCCHHHHHHHHHHhcCc----ccccccccccC---CCCccEEEE
Q 010101          367 GKIFVLVGAGG---AGRALAFGAKSRG-ARVI--IFNRNYERAKALADAVSGE----ALHFEYLHEFF---PEKGMILAN  433 (518)
Q Consensus       367 ~k~vlvlGaGg---~araia~~L~~~G-~~v~--i~nRt~~ka~~la~~~~~~----~~~~~~l~~~~---~~~~divIn  433 (518)
                      .-++.|||+|.   +|+.-+.++...+ +++.  |++|+++++++++++++..    +-+++++-+..   ..+.|+|+.
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            35899999999   9999888888766 4655  7899999999999999863    12444432100   135899999


Q ss_pred             cCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCc------hHHHHHHHHCCCeeeccHHHH
Q 010101          434 ASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN------TRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       434 atp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~ml  489 (518)
                      +||.....     ++....+..+.-|+  +=+|.-      ..+++.|++.|..+.-|...-
T Consensus        92 ~tp~~~H~-----~~~~~al~aGkhVl--~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r  146 (398)
T 3dty_A           92 ATPNGTHY-----SITKAALEAGLHVV--CEKPLCFTVEQAENLRELSHKHNRIVGVTYGYA  146 (398)
T ss_dssp             ESCGGGHH-----HHHHHHHHTTCEEE--ECSCSCSCHHHHHHHHHHHHHTTCCEEECCGGG
T ss_pred             CCCcHHHH-----HHHHHHHHCCCeEE--EeCCCcCCHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            99865432     12233455544332  234542      356778888888776665543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=95.29  E-value=0.019  Score=55.75  Aligned_cols=46  Identities=28%  Similarity=0.367  Sum_probs=38.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIF-NRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~-nRt~~ka~~la~~~  410 (518)
                      +++|+++|.|+ ||.|++++..|++.|++|.+. .|+.++++++++.+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~   72 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKI   72 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            46899999988 689999999999999988876 67777888877665

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.29  E-value=0.036  Score=55.82  Aligned_cols=71  Identities=24%  Similarity=0.269  Sum_probs=51.6

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-cc-ccc----ccc-CCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-HF-EYL----HEF-FPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-~~-~~l----~~~-~~~~~divInatp~  437 (518)
                      .|++|+|+|+ |++|.+++..++..|++|+++.|+.++.+ ++++++...+ +. +++    .+. .-..+|++|+++..
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~  237 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE-FVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG  237 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCch
Confidence            5789999998 99999999999999999999999988874 5566775431 11 111    110 12358999999863

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.29  E-value=0.019  Score=57.63  Aligned_cols=72  Identities=13%  Similarity=0.118  Sum_probs=49.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH----HHHHHHHHHhc----C--ccc--cccc---ccccCCCCc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY----ERAKALADAVS----G--EAL--HFEY---LHEFFPEKG  428 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~----~ka~~la~~~~----~--~~~--~~~~---l~~~~~~~~  428 (518)
                      +.++++||.|+ |+.|++++..|.+.|++|++++|+.    ++.+.+.+.+.    .  ..+  ++.+   +.. ...+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~  103 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNN-ACAGV  103 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHH-HHTTC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHH-HhcCC
Confidence            56789999998 8899999999999999999999965    34555544331    1  111  2221   222 23468


Q ss_pred             cEEEEcCCC
Q 010101          429 MILANASAI  437 (518)
Q Consensus       429 divInatp~  437 (518)
                      |+||++...
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            999998764

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.28  E-value=0.016  Score=59.00  Aligned_cols=114  Identities=18%  Similarity=0.136  Sum_probs=73.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHC--------CCe-EEEEeCCHHHHHHHHHHhcCcc--cccccccccCCCCccEEEEcCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR--------GAR-VIIFNRNYERAKALADAVSGEA--LHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~--------G~~-v~i~nRt~~ka~~la~~~~~~~--~~~~~l~~~~~~~~divInatp  436 (518)
                      -++.|||+|.+|+.-+.++...        +++ +.|++|+++++++++++++...  -+++++-+  ..+.|+|+.|||
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~--~~~iDaV~I~tP   84 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLE--RDDVQLVDVCTP   84 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTT--CTTCSEEEECSC
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEEeCC
Confidence            3899999999999877666543        233 5689999999999999998542  24554321  246899999999


Q ss_pred             CCCCCCCCCCCCChhhhcCCCEEEEEeeCCCch------HH---HHHHHHCCCeeeccHHHHH
Q 010101          437 IGMEPNSDQSPVPKEALKAYELVFDAVYTPRNT------RL---LREAAEVGATVVSGVEMFI  490 (518)
Q Consensus       437 ~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T------~l---l~~A~~~G~~~i~G~~ml~  490 (518)
                      ...+.     ++....+..+.-|+  +=+|.-+      .+   .+++++.|..+.-|..+-.
T Consensus        85 ~~~H~-----~~~~~al~aGkhVl--~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~~R~  140 (390)
T 4h3v_A           85 GDSHA-----EIAIAALEAGKHVL--CEKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFTYRR  140 (390)
T ss_dssp             GGGHH-----HHHHHHHHTTCEEE--EESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECGGGG
T ss_pred             hHHHH-----HHHHHHHHcCCCce--eecCcccchhHHHHHHHHHHHHHhcCCceEEEeeecc
Confidence            76432     12234455554332  3356432      23   3446667888777766543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.27  E-value=0.034  Score=55.58  Aligned_cols=72  Identities=13%  Similarity=0.018  Sum_probs=48.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHHHh------cCcc--cccc---cccccCCCCc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYE----RAKALADAV------SGEA--LHFE---YLHEFFPEKG  428 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~----ka~~la~~~------~~~~--~~~~---~l~~~~~~~~  428 (518)
                      ..+++|||+|+ |..|++++..|.+.|++|+++.|+..    ..+.+...+      +...  .++.   .+.. ...++
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~  101 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQ-VMKGV  101 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHH-HTTTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHH-HhcCC
Confidence            45789999997 78999999999999999999999543    333333221      1111  1222   2222 34578


Q ss_pred             cEEEEcCCC
Q 010101          429 MILANASAI  437 (518)
Q Consensus       429 divInatp~  437 (518)
                      |+||++...
T Consensus       102 d~Vih~A~~  110 (351)
T 3ruf_A          102 DHVLHQAAL  110 (351)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999998864

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.25  E-value=0.043  Score=54.28  Aligned_cols=118  Identities=14%  Similarity=0.095  Sum_probs=73.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc-------c-ccc-ccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE-------A-LHF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~-------~-~~~-~~l~~~~~~~~divInatp~  437 (518)
                      ||.|||||+.|.++++.|...|.  ++.+++.+.++++-.|.++...       . +.. .+. + ...++|+||-+...
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-~-~~~~aDvVvitAG~   79 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-S-LLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-G-GGTTCSEEEECCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-H-HhCCCCEEEEecCC
Confidence            68999999999999999987775  8999999998887776665421       0 111 122 2 35679999977765


Q ss_pred             CCCCCCCCCC-CCh--hh-------h---cCCCEEEEEeeCCCchHHHHHHHHCCC---eeeccHHHH
Q 010101          438 GMEPNSDQSP-VPK--EA-------L---KAYELVFDAVYTPRNTRLLREAAEVGA---TVVSGVEMF  489 (518)
Q Consensus       438 g~~~~~~~~~-~~~--~~-------l---~~~~~v~Di~Y~P~~T~ll~~A~~~G~---~~i~G~~ml  489 (518)
                      .-.|..+... +..  ..       +   .+.. ++=++.||..+--.-..+..|.   +++.+..+|
T Consensus        80 prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~a-ivlvvsNPvd~~t~i~~k~sg~p~~rvig~gT~L  146 (294)
T 2x0j_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPES-KILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQL  146 (294)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTC-EEEECSSSHHHHHHHHHHHSSCCTTSEEECCHHH
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHhcCCce-EEEEecCcchhhHHhhHHHcCCChhhEEEeeeEE
Confidence            4444311110 100  00       1   2334 4567889987655555666775   355554444

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.25  E-value=0.024  Score=56.58  Aligned_cols=72  Identities=21%  Similarity=0.260  Sum_probs=53.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCc------c--ccc-ccccccCCCCccEEEEcCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGE------A--LHF-EYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~------~--~~~-~~l~~~~~~~~divInatp~g  438 (518)
                      ++.|+|+|.+|.++++.|+..|. +|.+++++.++++..+.++...      .  +.. .+. + ...++|+||.+.+.+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~-a~~~aD~Vi~~ag~~   78 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-E-DMRGSDIVLVTAGIG   78 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-G-GGTTCSEEEECCSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-H-HhCCCCEEEEeCCCC
Confidence            47899999999999999988787 7999999998887766555321      1  111 233 2 457899999998876


Q ss_pred             CCCC
Q 010101          439 MEPN  442 (518)
Q Consensus       439 ~~~~  442 (518)
                      ..|.
T Consensus        79 ~k~G   82 (308)
T 2d4a_B           79 RKPG   82 (308)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            6553

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.23  E-value=0.011  Score=61.14  Aligned_cols=99  Identities=11%  Similarity=0.065  Sum_probs=62.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc--------------cccc-ccccccCCCCccEEEE
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE--------------ALHF-EYLHEFFPEKGMILAN  433 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~--------------~~~~-~~l~~~~~~~~divIn  433 (518)
                      ++.|||+|.+|.+++..|++ |.+|++++|+.++++++.+....-              .+.+ .+..+ ...++|+||-
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~-~~~~aDvvii   79 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKA-AYKEAELVII   79 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH-HHHHCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHH-HhcCCCEEEE
Confidence            68999999999999999999 999999999999998886532100              0011 11111 2345799999


Q ss_pred             cCCCCCCCCCCCC---CCCh---hh--hcCCCEEEEEeeCCCch
Q 010101          434 ASAIGMEPNSDQS---PVPK---EA--LKAYELVFDAVYTPRNT  469 (518)
Q Consensus       434 atp~g~~~~~~~~---~~~~---~~--l~~~~~v~Di~Y~P~~T  469 (518)
                      |+|....+.....   .+..   ..  +.++.+|++.+.+|..|
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~  123 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGF  123 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTH
T ss_pred             ecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccH
Confidence            9986521110000   0110   01  55678888866666544

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=95.21  E-value=0.026  Score=56.90  Aligned_cols=117  Identities=12%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|+|.|..|+.++..+...|++|..++|.....   ....+....++++    .+.++|+|+..+|..  +.
T Consensus       137 ~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~---~~~~~~~~~~l~e----ll~~sDivslh~Plt--~~  207 (334)
T 3kb6_A          137 RELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED---LKEKGCVYTSLDE----LLKESDVISLHVPYT--KE  207 (334)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH---HHHTTCEECCHHH----HHHHCSEEEECCCCC--TT
T ss_pred             ceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchh---hhhcCceecCHHH----HHhhCCEEEEcCCCC--hh
Confidence            45789999999999999999999999999999999875432   1222333334443    345689999999874  22


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeCCC-chHHHHHHHHCCCeeeccHHHH
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYTPR-NTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                       ..-.+..+.   ++++.+++-..=.+- .+.=|-+|-+.|.-.--|++.+
T Consensus       208 -T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~  257 (334)
T 3kb6_A          208 -THHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVF  257 (334)
T ss_dssp             -TTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCC
T ss_pred             -hccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCC
Confidence             223466654   467777776655443 4555566777665544455544

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.18  E-value=0.018  Score=56.75  Aligned_cols=68  Identities=18%  Similarity=0.121  Sum_probs=50.9

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccc---cccccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFE---YLHEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~---~l~~~~~~~~divInatp  436 (518)
                      .|++++|+|+ |++|.+++..++..|++|+.+.|+.++.+.+ ++++... ++..   ++.+ ....+|++|+ ++
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~ga~~~~~~~~~~~~~~-~~~~~d~vid-~g  197 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP-LALGAEEAATYAEVPERAK-AWGGLDLVLE-VR  197 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH-HHTTCSEEEEGGGHHHHHH-HTTSEEEEEE-CS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCCEEEECCcchhHHH-HhcCceEEEE-CC
Confidence            4789999998 9999999999999999999999998887554 5677543 2222   2222 2256899999 64

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.18  E-value=0.041  Score=54.85  Aligned_cols=70  Identities=20%  Similarity=0.218  Sum_probs=50.7

Q ss_pred             CCcEEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-ccccc------ccc-cCCCCccEEEEcCC
Q 010101          366 AGKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEY------LHE-FFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlG-aGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~------l~~-~~~~~~divInatp  436 (518)
                      .+++++|+| +||+|++++..++..|++|+++.|+.++.+.+. +++... ++..+      +.+ ......|++||++.
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g  218 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG  218 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc
Confidence            478999999 699999999999999999999999988876554 466432 22211      111 01235899999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	518
d1gqna_	252	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	1e-36
d1sfla_	236	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	3e-34
d1vi2a2	102	c.58.1.5 (A:5-106) Putative shikimate dehydrogenas	3e-27
d1nvta2	110	c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE	5e-27
d1p77a2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	2e-26
d1npya2	102	c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like	6e-26
d1nyta2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	8e-25
d1npya1	167	c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like	6e-22
d1nyta1	170	c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE	2e-20
d1vi2a1	182	c.2.1.7 (A:107-288) Putative shikimate dehydrogena	3e-19
d1nvta1	177	c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE	1e-17
d1p77a1	171	c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE	1e-17
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	7e-08
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	4e-06
d1k2wa_	256	c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s	2e-05
d1gpja2	159	c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle	3e-05
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	5e-05
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	1e-04
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	1e-04
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	1e-04
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	1e-04
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	2e-04
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	3e-04
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	3e-04
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	3e-04
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	3e-04
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	3e-04
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	4e-04
d1ae1a_	258	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	4e-04
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	4e-04
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	5e-04
d1fjha_	257	c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase	5e-04
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	5e-04
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	6e-04
d2o23a1	248	c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr	7e-04
d1w6ua_	294	c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr	7e-04
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	7e-04
d1gega_	255	c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl	7e-04
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	7e-04
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	8e-04
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	0.001
d2d1ya1	248	c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T	0.001
d2rhca1	257	c.2.1.2 (A:5-261) beta-keto acyl carrier protein r	0.001
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	0.001
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	0.001
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	0.001
d1h5qa_	260	c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga	0.002
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	0.002
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	0.002
d2h7ma1	268	c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri	0.002
d1oaaa_	259	c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus	0.002
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	0.002
d1xu9a_	269	c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase	0.002
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	0.003
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	0.003
d1wmaa1	275	c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox	0.003
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	0.003
d1o5ia_	234	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.004
d1sbya1	254	c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase	0.004

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Length = 252

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

 Score =  134 bits (338), Expect = 1e-36
 Identities = 44/235 (18%), Positives = 93/235 (39%), Gaps = 13/235 (5%)

Query: 10  LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQH-----PTLP 63
            +   L       ++A     +    D++E  +D     +    V    +      P +P
Sbjct: 17  KIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIP 76

Query: 64  AIVSYRLKSSRKSSDEACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEIIYSRSNT 122
            + ++R                L + R A+D   V+ ++++       + + + Y+ ++ 
Sbjct: 77  LLFTFRSAKEG-GEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHN 135

Query: 123 KIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTH----- 177
             +V S  +    P+ E++   +  MQA GAD+ K+ +   S  D+  +           
Sbjct: 136 VYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHY 195

Query: 178 CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLEH 232
              P+I +++   G+IS+L G  FG    +G++   S PG   +  L+ V  + H
Sbjct: 196 ADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILH 250

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 236

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

 Score =  126 bits (319), Expect = 3e-34
 Identities = 46/235 (19%), Positives = 93/235 (39%), Gaps = 11/235 (4%)

Query: 7   NSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQ-----HPT 61
           +  +V T     + EE        +++  D++EL ID  E   + +V ++I        +
Sbjct: 1   HVEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDS 60

Query: 62  LPAIVSYRLKSS--RKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEIIYSR 119
              +V+YR K                +  L     +D+  +E   ++  +     I + +
Sbjct: 61  FKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQ 120

Query: 120 SNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHC- 178
              K ++ S+ N    P  ++L  +   MQ    + +KL +   +  D+  + + ++   
Sbjct: 121 QYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFS 180

Query: 179 ---QVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQL 230
                 ++ +++   GLIS+     FGG L YG +G    PG   +  LK    L
Sbjct: 181 DTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL 235

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (257), Expect = 3e-27
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 237 TKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSV 294
            ++ GL++ P+ HS  P + N A         Y+   VD                 G  V
Sbjct: 3   YELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGV 62

Query: 295 GIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNT 336
            +P+K+ A    DE+ P AK +GA+NTI+    DG L GYNT
Sbjct: 63  SMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNT 102

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  102 bits (256), Expect = 5e-27
 Identities = 45/106 (42%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 233 INPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVP--MLVDDVKEFFRTYSGTDFA 290
           IN  TK+ GL+ +PV HS  PI+HN AF+    N +YV   +L +++K            
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 291 GFSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNT 336
           GF+V IPHK   +   DE+   A+ IGAVNTI     DGK +GYNT
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNT 110

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

 Score =  100 bits (251), Expect = 2e-26
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 3/101 (2%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSVG 295
            ++ +  NP+  SK P++ N     T     Y+  L D    ++    +      G ++ 
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNT 336
            P KE A    DE    AK   A NT+ +   DGKL   NT
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNT 101

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

 Score = 99.7 bits (248), Expect = 6e-26
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 233 INPDTKIF-GLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAG 291
           IN DT++   L   P   + G   HN  +     N IY      D++   +        G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 292 FSVGIPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNT 336
            +V +P KE  +   DE+HP A++I +VNTI+    +G L  YNT
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNT 102

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

 Score = 96.3 bits (239), Expect = 8e-25
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 238 KIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVD--DVKEFFRTYSGTDFAGFSVG 295
           + + +  NP+ HSK P +H    +       Y  +L    D       +      G +V 
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 296 IPHKEPAVACCDEVHPLAKSIGAVNTIIRRPIDGKLVGYNT 336
           +P KE A A  DE+   A   GAVNT++R   DG+L+G NT
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNT 101

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

 Score = 90.3 bits (223), Expect = 6e-22
 Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 8/149 (5%)

Query: 367 GKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADAVSGEALHFEYLHEFFP 425
               ++ G+GG  +A+    K+ G   + I+ RN +  +            + Y++    
Sbjct: 17  NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQY-----LAALYGYAYINSLEN 71

Query: 426 EKGMILANASAIGMEPNSDQSPV--PKEALKAYELVFDAVYTPRNTRLLREAAEVGATVV 483
           ++  IL N ++IGM+   ++  +  PK  +    + FD V  P  T  +R A   G   +
Sbjct: 72  QQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPFIRYAQARGKQTI 131

Query: 484 SGVEMFIRQALGQFRLFTGGLAPEDFMRK 512
           SG  + + QA+ QF L+T     ++ + +
Sbjct: 132 SGAAVIVLQAVEQFELYTHQRPSDELIAE 160

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

 Score = 86.6 bits (213), Expect = 2e-20
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 4/165 (2%)

Query: 355 INGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
           ++ +   +    G   +L+GAGGA R +     S    V I NR   RA+ LA   +   
Sbjct: 6   LSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG 65

Query: 415 LHFEYLHEFFPEKGM-ILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLR 473
                  +        ++ NA++ G+    D   +P   +      +D  Y    T  L 
Sbjct: 66  SIQALSMDELEGHEFDLIINATSSGISG--DIPAIPSSLIHPGIYCYDMFYQKGKTPFLA 123

Query: 474 EAAEVGA-TVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
              + G+     G+ M + QA   F L+ G L   + + K + E+
Sbjct: 124 WCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEE 168

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

 Score = 83.1 bits (204), Expect = 3e-19
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 13/173 (7%)

Query: 355 INGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVII-FNRNYERAKALADAVSGE 413
           I  +      I GK  VL+GAGGA  A+       G + I  FNR  E            
Sbjct: 6   IRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRV 65

Query: 414 ALHFEYLHEFFPEKGM-----------ILANASAIGMEPNSDQSPVPKEALKAYEL-VFD 461
             + + +                    IL N + +GM+P  ++S V   +L    L V +
Sbjct: 66  NENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTE 125

Query: 462 AVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV 514
            VY P  T+LL++A + G   + G  M + Q   QF L+TG   P +++++++
Sbjct: 126 CVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 178

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 78.9 bits (193), Expect = 1e-17
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 8/170 (4%)

Query: 355 INGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE- 413
              +      +  K  V+ GAGGA RA+AF        +II NR  E+A+ALA  ++ + 
Sbjct: 6   RMALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL 64

Query: 414 ------ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPR 467
                  + F  L        +I+             +  V  E L+   +V D +Y P 
Sbjct: 65  NKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPL 124

Query: 468 NTRLLREAAEVGATVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
            T LL+EA +V A  ++G+ M I Q    F+++TG     + M+  ++++
Sbjct: 125 ETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDK 174

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

 Score = 78.0 bits (191), Expect = 1e-17
 Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 5/166 (3%)

Query: 355 INGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
           +  +         +  +++GAGGA + +          +++ NR + + K LA+      
Sbjct: 6   VTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG 65

Query: 415 LHFEYLHEFFP-EKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYT-PRNTRLL 472
                  +  P +   ++ NA++ G+      + V  E LK     +D  Y    +T  +
Sbjct: 66  NIQAVSMDSIPLQTYDLVINATSAGLSG--GTASVDAEILKLGSAFYDMQYAKGTDTPFI 123

Query: 473 REAAEVGA-TVVSGVEMFIRQALGQFRLFTGGLAPEDFMRKLVLEQ 517
                +G   V  G  M + QA   F L+ G +     + + + + 
Sbjct: 124 ALCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMPDFVSVYEQLKKA 169

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 50.4 bits (119), Expect = 7e-08
 Identities = 25/128 (19%), Positives = 46/128 (35%)

Query: 366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFP 425
           A K  +++G+G   R         G +V +  R  E AK L+  V         +++   
Sbjct: 1   ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAA 60

Query: 426 EKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSG 485
               +  +   I + P +  + V K A++  + V    Y       L +AA+     V  
Sbjct: 61  LDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMN 120

Query: 486 VEMFIRQA 493
              +   A
Sbjct: 121 EIGYSAMA 128

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 45.8 bits (107), Expect = 4e-06
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
           ++ +L G G  G+ LA    + G  +++ +R  E+A+A A      A
Sbjct: 2   RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIA 48

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
            GK  ++ G+  G GRA A      GARV I + N E A+A A  +   A    
Sbjct: 4   DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIA 57

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 365 IAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNRNYERAKALADAVSGEALHFEYLHEF 423
           +  K  ++VGAG  G+ +A     RG R + + NR YERA  LA  + GEA+ F+ L + 
Sbjct: 22  LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDH 81

Query: 424 FPE-KGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRN-TRLLREAAEVGAT 481
                 ++ A A+   +    D     ++  +   ++   +  PR+    +    +V   
Sbjct: 82  LARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVR 141

Query: 482 VVSGVEMFIRQAL 494
            +  + +  R+ L
Sbjct: 142 TIDDLRVIARENL 154

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.4 bits (99), Expect = 5e-05
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
            GK+ ++ G   G G +      + GA+V+  +   E  KA+A  ++  A +  
Sbjct: 5   TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVH 58

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
            GK+ ++ G   G G  +       GA+V   + N    + LA  +   ++   
Sbjct: 5   QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVR 58

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYL 420
           + G+I ++ GAG G GR  A+      +++++++ N    +  A    G        
Sbjct: 5   VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTF 61

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF 417
             K  ++ GA  G GRA        GAR++  +      +  A+AV    +  
Sbjct: 4   KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVM 56

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
           +GK  ++ G   G G   A  A + GARV++ +   E   A A  +   A +  
Sbjct: 4   SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQH 57

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF 417
           +GK  ++ GA  G GRA        GA ++  +R          A+  EA+  
Sbjct: 4   SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAV 56

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
           +GK  ++ G+  G GR+ A      GA+V I  RN +R +     +    +  E ++
Sbjct: 3   SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKIN 59

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG 412
           AGK+ V+ G G G G  +     + GARV+I +++    +AL   + G
Sbjct: 5   AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG 52

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF 417
            GKI ++ GA  G GRA+A    +RGA+VI    +   A+A++D +       
Sbjct: 3   EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGL 55

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF 417
            G+  ++ G   G GRAL     + GA+V + +++ ER   L        L  
Sbjct: 4   KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGI 56

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYL 420
             ++ ++ G G G GRA A    + GA++ + + + E  +A   AV   A   E L
Sbjct: 3   TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVL 58

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 13/53 (24%), Positives = 19/53 (35%)

Query: 366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE 418
           +GK+ V  G G  G A+    K  G  V+  + +          V G     E
Sbjct: 2   SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTE 54

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
           + G   ++ G   G G A+       GARV   +RN +      +    + L+ E   
Sbjct: 4   LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSV 61

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
            G++ ++ G   G G+A+       G+ V+I +R  ER K+ AD +   
Sbjct: 11  QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQAN 59

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFF 424
            GK+ +L  A  G G+A A      GA+VI  + N  + + L      +    +   +  
Sbjct: 5   DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQ 64

Query: 425 PEKGM 429
            ++  
Sbjct: 65  IDQFA 69

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 371 VLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKA-LADAVSGEALHFEYLHEFFPEK 427
           +++   A G G A     ++ G +++  +       A L+ A   +    + L +   + 
Sbjct: 4   IVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCS-KG 62

Query: 428 GMILANASAIGME 440
              L   + +G +
Sbjct: 63  MDGLVLCAGLGPQ 75

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
            GK  ++ GAG G G+ +A    + GA V++ + N + A  + D +           
Sbjct: 10  DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG 412
           +AG+  ++ GAG G GR       + GARV+  +R      +L     G
Sbjct: 5   LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG 53

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEF 423
           + G + V+ G   G G A A     +GA  ++ +      +A A  +    +        
Sbjct: 3   VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS 62

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
            GK+  + G G G G+ +     S GA+ +I +R  +  KA A+ +S + 
Sbjct: 24  QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT 73

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
            GK+ ++ GAG   G A A      G  + + + N E  +    +V  + +      
Sbjct: 4   NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYV 60

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 371 VLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
            LV     G G+A+A      G  V I + N   AKA+A  ++    H   + 
Sbjct: 4   ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVK 56

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
           + GK+ ++ GA  G GRA A     +GA+V + + N E       A+  + 
Sbjct: 1   VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF 51

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYL 420
            G   ++ G   G G  +     S GA V   +RN +           +    E  
Sbjct: 7   EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEAS 62

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
           + G++ ++ G   G G  +A G    G  V++ +RN E A   A  ++ + 
Sbjct: 3   LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY 53

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH 416
           AGK  ++ G   G GRA+A      GA V + +      K +A+A+ G    
Sbjct: 4   AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-PEGKEVAEAIGGAFFQ 54

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
            ++ ++ GA  G G  +A      G RV +  R  E  +     +    +  +   
Sbjct: 2   SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRT 57

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH 416
           A K+ ++ G+  G GRA A      GA+V I  R+ ER +     +    + 
Sbjct: 4   AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVS 55

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
             K+ ++ G   G G   A      GA+V+I +   +  + + + +   
Sbjct: 5   QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP 53

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG 412
           +G   ++ GAG G GR       + GA+V+   R      +LA    G
Sbjct: 4   SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPG 51

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA 414
             K  ++ G   G G A      + GA V +  R+   A  + + V  E 
Sbjct: 8   VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF 57

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
            K+ ++ GAG G GR +A       + VI  +R  +   ++ D +           
Sbjct: 10  NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYA 65

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
            GK+ ++ G   G G A+A      GA+V+I  R+ +  +  A +V   
Sbjct: 5   DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP 53

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 366 AGKIFVLVGAGGA---GRALAFGAKSRGARVIIFNRNYER-AKALADAVSGEALHFEYLH 421
            GK  ++ G          +A  A+ +GA++++   +  R  + + D +  +A   E   
Sbjct: 5   DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDV 64

Query: 422 EF 423
           + 
Sbjct: 65  QN 66

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 366 AGKIFVLVGAG-GAGRALAFG---AKSRGARVIIFNRNYERAKALADAVSGEA 414
              + VL GA  G GRALA       S G+ +++  R+    + L + +  + 
Sbjct: 5   GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ 57

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.7 bits (87), Expect = 0.002
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH 416
           + K  ++ G+  G GR  A      GA V I  R+ ER +     +    + 
Sbjct: 4   SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVS 55

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
           + GK  ++ GA  G GR +A+     GA V++  R+ E  + +   
Sbjct: 12  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH 57

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 367 GKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE 413
            ++ ++ GA  G G A+A     +G +V+   R     + LA      
Sbjct: 10  DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA 57

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 1/126 (0%)

Query: 363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHE 422
           SP   +I V VG   +G   A   +  G  V ++ R+ +        +  +     YL E
Sbjct: 1   SPTTDRIAV-VGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLE 59

Query: 423 FFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV 482
              E   I   +S++          V           +D++Y         E       +
Sbjct: 60  QGVELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCL 119

Query: 483 VSGVEM 488
           V   + 
Sbjct: 120 VGLSQD 125

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 366 AGKIFVLV--GAGGAGRALAFG-AKSRGARVIIFNRNYERAKALADAVSGEALHFEYLH 421
           +G    LV  G  G G A+     +     V++  R+  R +A    +  E L   +  
Sbjct: 1   SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQ 59

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 1/56 (1%)

Query: 366 AGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYL 420
             K  ++ G   G G A+       GA +    RN             +       
Sbjct: 7   KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGS 62

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAV 410
           I  K  +++ A  G GRA+A      GA V I  RN E  K      
Sbjct: 2   IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRY 48

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADA 409
           +  K  + V A GG G   +     R  +  +     E   ALA+ 
Sbjct: 3   LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAEL 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	518
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	100.0
d1sfla_	236	Type I 3-dehydroquinate dehydratase {Staphylococcu	100.0
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	100.0
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	100.0
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	100.0
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	100.0
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	100.0
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	100.0
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	100.0
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	100.0
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.97
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.97
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	99.43
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.11
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.68
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.09
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.86
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.86
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.85
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.84
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.83
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.81
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.8
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.79
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.77
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.76
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.71
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.71
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.69
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.68
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.68
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.67
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.66
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.65
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.64
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.63
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.63
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.62
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.6
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.6
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.59
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.56
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.55
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.55
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.53
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.51
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.5
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.5
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.48
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.44
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.4
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.39
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.37
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.37
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.34
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.34
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.33
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.33
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.32
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.32
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.31
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.3
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.29
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.27
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.26
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.26
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.26
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.26
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.25
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.25
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.25
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.22
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.21
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.21
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.2
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.19
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.18
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.15
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.15
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.12
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.12
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.1
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.08
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.08
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.08
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.07
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.07
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.06
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.05
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.0
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.99
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.97
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.95
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.95
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.94
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.93
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.93
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.9
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.89
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.89
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.88
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.86
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.85
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.85
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.82
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.81
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.79
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.79
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.79
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.76
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.76
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.75
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.75
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.74
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.73
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.73
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.72
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.71
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.68
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.66
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.63
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.61
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.59
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.56
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	96.54
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	96.53
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.5
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.5
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.48
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.47
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.42
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.42
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.42
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.41
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.39
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.34
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.31
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.28
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.27
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.23
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.21
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.19
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.1
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.09
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.09
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.03
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.98
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.95
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.9
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	95.9
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.89
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.88
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.86
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.66
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.64
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.63
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.61
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.6
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	95.58
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.46
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.44
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.33
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	95.31
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.28
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	95.27
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.24
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.17
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	95.14
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	95.13
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.11
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.11
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.09
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.08
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.06
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.92
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.91
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.87
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	94.82
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	94.79
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.73
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.72
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.63
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.55
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.55
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.38
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.35
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.35
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	94.33
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	94.28
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.28
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.19
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.18
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	94.17
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	94.11
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.07
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.06
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	94.04
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.0
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.97
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	93.96
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.94
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.81
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.69
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.64
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.58
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.58
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.55
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	93.46
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.43
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.38
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.35
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.31
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.29
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.25
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.21
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	93.2
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	93.14
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.08
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	93.08
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.06
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.0
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.96
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	92.9
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	92.76
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.69
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.69
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.66
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	92.62
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.53
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	92.37
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	92.3
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.3
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	92.17
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.08
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	92.03
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.83
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.79
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.77
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.76
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	91.76
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.72
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.68
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.65
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	91.61
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.57
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.51
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	91.5
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	91.37
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	91.3
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	91.28
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.23
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.72
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.66
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	90.55
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.47
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.38
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.35
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	90.31
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.11
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.95
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	89.57
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	89.57
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.5
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	89.46
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.42
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	89.38
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	89.18
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.18
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	88.88
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	88.78
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.47
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	88.21
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	88.13
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	87.96
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	87.87
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.81
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	87.8
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	87.75
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.74
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	87.63
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	87.62
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.61
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	87.59
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	87.55
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	87.52
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	87.45
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.43
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.31
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	87.28
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	87.05
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	87.05
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	86.79
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	86.55
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	86.54
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	86.22
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	86.16
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	86.01
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	85.8
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.62
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	85.04
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	84.97
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	84.95
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	84.79
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	84.53
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.11
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	84.08
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	83.96
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	83.96
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	83.8
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.78
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	83.77
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	83.4
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	83.12
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.11
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	83.03
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	82.97
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	82.8
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	82.72
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	82.35
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	81.65
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.25
d1wdda1	325	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	81.16
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	80.99
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	80.91
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	80.35
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	80.22
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.21
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.11
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	80.06

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=100.00  E-value=1.7e-54  Score=423.61  Aligned_cols=224  Identities=19%  Similarity=0.312  Sum_probs=204.2

Q ss_pred             cCCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-C-Cc---HHHHHHHhcC-CCCcEEEEeecCCCCCCCCC
Q 010101            6 KNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-F-SH---ISEVDKLIQH-PTLPAIVSYRLKSSRKSSDE   79 (518)
Q Consensus         6 ~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~-~~---~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~   79 (518)
                      .++|+|||||++++.+++++++.++.+.|||+||||+|+|. . +.   .+.+..+++. .++|+|||+|+++|||.|++
T Consensus        13 ~g~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~   92 (252)
T d1gqna_          13 EGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTI   92 (252)
T ss_dssp             SSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCC
Confidence            46899999999999999999999988899999999999997 3 32   2345556554 46999999999999999999


Q ss_pred             CcHHHHHHHHHHHhhcC-CcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEE
Q 010101           80 ACKNTCLQVLRRALDLD-VEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMK  157 (518)
Q Consensus        80 ~~~~~~~~ll~~~~~~g-~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivK  157 (518)
                      + +++|+++++.++++| +||||||++..++.+.++.. +++.++++|+||||| ++||+.+++.+++++|.++||||+|
T Consensus        93 ~-~~~~~~ll~~~~~~~~~d~iDiEl~~~~~~~~~li~~a~~~~~~vI~S~Hdf-~~TP~~~~l~~~~~~m~~~gaDivK  170 (252)
T d1gqna_          93 T-TQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDF-HQTPSAEEMVSRLRKMQALGADIPK  170 (252)
T ss_dssp             C-HHHHHHHHHHHHHHSCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEES-SCCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred             C-HHHHHHHHHHHHHcCCCceEeccccccHHHHHHHHHHhhcCCCeEEEEecCC-CCCCCHHHHHHHHHHHHHhCCCeEE
Confidence            9 999999999999999 99999999999887777776 567899999999999 9999999999999999999999999


Q ss_pred             EEcccCCcccHHHHHHHhcc-----CCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhc
Q 010101          158 LEIAVDSITDLAPVFEMLTH-----CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLE  231 (518)
Q Consensus       158 ia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~  231 (518)
                      +|+||++.+|++++++++.+     .++|+|+|+||+.|++||++++.|||++||+++++++||||+++++++++++..
T Consensus       171 ia~~a~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tya~~~~~sAPGQ~~~~~l~~~l~~l  249 (252)
T d1gqna_         171 IAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMIL  249 (252)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHHHHTCSSCCEEEECTTTTHHHHHCHHHHTCCEEECBSSSCCSTTCCBHHHHHHHHHHH
T ss_pred             EEecCCCHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcchhHHHHHHHhCCceEeccCCCCCCCCCCCHHHHHHHHHHH
Confidence            99999999999999998643     378999999999999999999999999999999999999999999999998754

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.9e-49  Score=384.37  Aligned_cols=219  Identities=20%  Similarity=0.337  Sum_probs=186.3

Q ss_pred             eEEEeecCC-CHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcH---HHHHHHhcC-CCCcEEEEeecCCCCCCCCCCcHH
Q 010101           10 LVCTQLECE-TTEEMQASIEQAKVEGADLVELCIDSME-FSHI---SEVDKLIQH-PTLPAIVSYRLKSSRKSSDEACKN   83 (518)
Q Consensus        10 ~icv~l~~~-~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~---~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~   83 (518)
                      +||+|++.. +.++.+.+..++...++|+||||+|+|. .++.   +.+..+++. .++|+|||+|+++|||.++++ ++
T Consensus         3 ~~~~~~~~~~~~e~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~v~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~-~~   81 (236)
T d1sfla_           3 EVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFT-ND   81 (236)
T ss_dssp             EEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCC-HH
T ss_pred             cEEEecCCchhHHHHHHHHHHhcCcCCCEEEEEeccccCCCHHHHHHHHHHHHhcCCCCcEEEEEeCHHHCCCCCCC-HH
Confidence            588999998 6677655444445678999999999998 5543   234445443 479999999999999999999 99


Q ss_pred             HHHHHHHHHhhc-CCcEEEEecCCCCchh--hHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEE
Q 010101           84 TCLQVLRRALDL-DVEFVEMDYEVASDPL--MSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLE  159 (518)
Q Consensus        84 ~~~~ll~~~~~~-g~~yvDiEl~~~~~~~--~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia  159 (518)
                      +|++++..+++. ++||||||+..+.+..  .++.. +++.++++|+||||| ++||+.+++.+++++|.++||||+|||
T Consensus        82 ~~~~ll~~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~~~~vI~S~H~f-~~TP~~~el~~~~~~~~~~gaDivKia  160 (236)
T d1sfla_          82 SYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNF-ESTPPLDELQFIFFKMQKFNPEYVKLA  160 (236)
T ss_dssp             HHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEES-SCCCCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHHHhcCCchhhhhhcchhhHHHHHHHHHHhhcCCCEEEEEEcCC-CCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            999999999987 4999999999876543  23333 567899999999999 999999999999999999999999999


Q ss_pred             cccCCcccHHHHHHHhcc----CCCCEEEEecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhh
Q 010101          160 IAVDSITDLAPVFEMLTH----CQVPLIALAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQL  230 (518)
Q Consensus       160 ~~~~~~~D~~~l~~~~~~----~~~p~i~~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~  230 (518)
                      +||++.+|++++++++.+    .++|+|+||||+.|++||++++.|||++||++++.++||||+++++|++++.+
T Consensus       161 ~~~~~~~D~~~ll~~~~~~~~~~~~pii~~~MG~~G~~sRi~~~~~GS~~tya~~~~~sAPGQ~~~~~lr~~l~~  235 (236)
T d1sfla_         161 VMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL  235 (236)
T ss_dssp             ECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCCSSTTCCBHHHHHHHHTT
T ss_pred             EecCCHHHHHHHHHHHHHHhhccCCCEEEEecCCcchHHHHHHHHhCCceEEccCCCCCCCCCcCHHHHHHHHhh
Confidence            999999999999998643    37899999999999999999999999999999999999999999999998753

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-37  Score=286.12  Aligned_cols=163  Identities=26%  Similarity=0.344  Sum_probs=142.4

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc---
Q 010101          337 DCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE---  413 (518)
Q Consensus       337 D~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~---  413 (518)
                      ||.||+.+|++ .    +        ..++||+|+|+|+||+|||++++|.++|++|+|+|||.+|++++++.+...   
T Consensus         1 Dg~Gf~~~l~~-~----~--------~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~   67 (170)
T d1nyta1           1 DGVGLLSDLER-L----S--------FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSI   67 (170)
T ss_dssp             HHHHHHHHHHH-H----T--------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSE
T ss_pred             CHhHHHHHHHH-c----C--------CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccc
Confidence            89999999875 2    2        567899999999999999999999999999999999999999999988642   


Q ss_pred             -ccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCe-eeccHHHHHH
Q 010101          414 -ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGAT-VVSGVEMFIR  491 (518)
Q Consensus       414 -~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~-~i~G~~ml~~  491 (518)
                       ...+++.   ...++|+||||||+||.+..  .+++.+.+++..+|+|++|+|.+|+|++.|+++||. +++|++||++
T Consensus        68 ~~~~~~~~---~~~~~dliIN~Tp~G~~~~~--~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~i~Gl~MLi~  142 (170)
T d1nyta1          68 QALSMDEL---EGHEFDLIINATSSGISGDI--PAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVA  142 (170)
T ss_dssp             EECCSGGG---TTCCCSEEEECCSCGGGTCC--CCCCGGGCCTTCEEEESCCCSSCCHHHHHHHHTTCCEEECTHHHHHH
T ss_pred             cccccccc---cccccceeecccccCcccCC--CCCcHHHhccCcEEEEeecCCCCCHHHHHHHHcCCCcccCCHHHHHH
Confidence             2233332   34568999999999998753  346667788999999999999999999999999986 7899999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHhh
Q 010101          492 QALGQFRLFTGGLAPEDFMRKLVLEQ  517 (518)
Q Consensus       492 Qa~~qf~lw~g~~~p~~~~~~~~~~~  517 (518)
                      ||+.||++|||+++|.+.|++++.++
T Consensus       143 Qa~~~f~lwtG~~~~~~~~~~~l~~~  168 (170)
T d1nyta1         143 QAAHAFLLWHGVLPDVEPVIKQLQEE  168 (170)
T ss_dssp             HHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence            99999999999999999999998764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=1.6e-37  Score=285.27  Aligned_cols=160  Identities=24%  Similarity=0.380  Sum_probs=139.8

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCccc
Q 010101          337 DCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEAL  415 (518)
Q Consensus       337 D~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~  415 (518)
                      ||.||..+|++.     +        .+ ++++|+|+|+||+|||++++|.+.|+ +|+|+||+.+++++|++.++....
T Consensus         1 D~~G~~~~l~~~-----~--------~~-~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~   66 (167)
T d1npya1           1 DYIAIVKLIEKY-----H--------LN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYI   66 (167)
T ss_dssp             HHHHHHHHHHHT-----T--------CC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEE
T ss_pred             ChHHHHHHHHHc-----C--------CC-CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhh
Confidence            899999998751     1        23 67899999999999999999999999 999999999999999998875443


Q ss_pred             ccccccccCCCCccEEEEcCCCCCCCCCCCC--CCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHHH
Q 010101          416 HFEYLHEFFPEKGMILANASAIGMEPNSDQS--PVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQA  493 (518)
Q Consensus       416 ~~~~l~~~~~~~~divInatp~g~~~~~~~~--~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa  493 (518)
                      ..  +   ...++|+||||||+||.|..+..  +++...+.+..+|+|++|+|.+|+|+++|+++||++++|++||++||
T Consensus        67 ~~--~---~~~~~DliINaTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i~Gl~Mli~Qa  141 (167)
T d1npya1          67 NS--L---ENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPFIRYAQARGKQTISGAAVIVLQA  141 (167)
T ss_dssp             SC--C---TTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred             hc--c---cccchhhheeccccCCccccccccccccHhhcCCcceEEEEeeccCCCHHHHHHHHCCCeEEECHHHHHHHH
Confidence            22  1   23568999999999999875554  35566788889999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHH
Q 010101          494 LGQFRLFTGGLAPEDFMRKLVL  515 (518)
Q Consensus       494 ~~qf~lw~g~~~p~~~~~~~~~  515 (518)
                      +.||++|||+++|.++|+++..
T Consensus       142 ~~~f~lwtg~~~~~~~~~~aa~  163 (167)
T d1npya1         142 VEQFELYTHQRPSDELIAEAAA  163 (167)
T ss_dssp             HHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHH
Confidence            9999999999999999998764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.4e-36  Score=280.03  Aligned_cols=166  Identities=34%  Similarity=0.505  Sum_probs=144.4

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc---
Q 010101          337 DCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE---  413 (518)
Q Consensus       337 D~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~---  413 (518)
                      ||.||+.+|++..             ..++||+|+|+|+||+|||++++|.+.| +|+|+||+.+++++|++.+...   
T Consensus         1 D~~G~~~~l~~~~-------------~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~   66 (177)
T d1nvta1           1 DGIGARMALEEEI-------------GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNK   66 (177)
T ss_dssp             HHHHHHHHHHHHH-------------CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhC-------------CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhch
Confidence            8999999998632             4688999999999999999999997666 9999999999999999888531   


Q ss_pred             ----ccccccccccCCCCccEEEEcCCCCCCCCCCCC-CCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHH
Q 010101          414 ----ALHFEYLHEFFPEKGMILANASAIGMEPNSDQS-PVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEM  488 (518)
Q Consensus       414 ----~~~~~~l~~~~~~~~divInatp~g~~~~~~~~-~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~m  488 (518)
                          .+++.++.. ....+|++|||||.||.|..+.. +++.+.+.+..+++|++|+|.+|+|++.|+++||++++|++|
T Consensus        67 ~~~~~~~~~~~~~-~~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~l~~~a~~~G~~~i~Gl~M  145 (177)
T d1nvta1          67 KFGEEVKFSGLDV-DLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLKEAKKVNAKTINGLGM  145 (177)
T ss_dssp             CHHHHEEEECTTC-CCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCHHHHHHHTTTCEEECTHHH
T ss_pred             hhhhhhhhhhhhh-ccchhhhhccCCcccccccccccchhhhhccCcccceeeecCCcHhHHHHHHHHHCCCcccCCHHH
Confidence                234555554 45678999999999998864443 355667888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 010101          489 FIRQALGQFRLFTGGLAPEDFMRKLVLEQ  517 (518)
Q Consensus       489 l~~Qa~~qf~lw~g~~~p~~~~~~~~~~~  517 (518)
                      |++||+.||++|||.++|.+.|+++++++
T Consensus       146 Lv~Qa~~qf~lwtg~~~~~~~~r~~l~~~  174 (177)
T d1nvta1         146 LIYQGAVAFKIWTGVEPNIEVMKNAIIDK  174 (177)
T ss_dssp             HHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999998764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.4e-35  Score=271.59  Aligned_cols=164  Identities=32%  Similarity=0.505  Sum_probs=136.1

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHH---HHHHHHHHhcC
Q 010101          337 DCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYE---RAKALADAVSG  412 (518)
Q Consensus       337 D~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~---ka~~la~~~~~  412 (518)
                      ||.||+++|++     .|        .++++|+|+|+|+||+|||++++|.+.|+ +|+|+||+.+   +++.++++++.
T Consensus         1 D~~Gf~~~l~~-----~~--------~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~   67 (182)
T d1vi2a1           1 DGTGHIRAIKE-----SG--------FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE   67 (182)
T ss_dssp             HHHHHHHHHHH-----TT--------CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-----cC--------CCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHh
Confidence            89999999865     12        56889999999999999999999999999 9999999865   55556666653


Q ss_pred             cc------ccccc---ccccCCCCccEEEEcCCCCCCCCCCCC-CCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCee
Q 010101          413 EA------LHFEY---LHEFFPEKGMILANASAIGMEPNSDQS-PVPKEALKAYELVFDAVYTPRNTRLLREAAEVGATV  482 (518)
Q Consensus       413 ~~------~~~~~---l~~~~~~~~divInatp~g~~~~~~~~-~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~  482 (518)
                      ..      ..+.+   +.+ ....+|+||||||+||.+...+. +.+...+++..+|+|++|+|.+|+|++.|+++||++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~-~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T~ll~~a~~~g~~~  146 (182)
T d1vi2a1          68 NTDCVVTVTDLADQQAFAE-ALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKT  146 (182)
T ss_dssp             HSSCEEEEEETTCHHHHHH-HHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSCHHHHHHHTTTCEE
T ss_pred             hcCcceEeeecccccchhh-hhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCccccHHHHHHHHCcCeE
Confidence            21      12222   111 23468999999999999864443 344556888899999999999999999999999999


Q ss_pred             eccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010101          483 VSGVEMFIRQALGQFRLFTGGLAPEDFMRKLV  514 (518)
Q Consensus       483 i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~~~  514 (518)
                      ++|++||++||+.||++|||+++|.+.|++++
T Consensus       147 i~Gl~Mli~Qa~~~f~iwtg~~~~~~~~~~~l  178 (182)
T d1vi2a1         147 IDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM  178 (182)
T ss_dssp             ECHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred             eccHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            99999999999999999999999999999976

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=3.4e-34  Score=263.92  Aligned_cols=165  Identities=19%  Similarity=0.281  Sum_probs=134.0

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc--
Q 010101          337 DCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA--  414 (518)
Q Consensus       337 D~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~--  414 (518)
                      ||.||+++|++ .    +        ..+++|+|+|+|+||+|||++++|.+.+.+|+|+|||.++++++++.++...  
T Consensus         1 D~~Gf~~~l~~-~----~--------~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~   67 (171)
T d1p77a1           1 DGIGLVTDLQR-L----N--------WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNI   67 (171)
T ss_dssp             HHHHHHHHHHH-T----T--------CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCE
T ss_pred             CHHHHHHHHHH-c----C--------CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcccc
Confidence            89999999865 1    2        5678999999999999999999999855599999999999999999986421  


Q ss_pred             cccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEee-CCCchHHHHHHHHCCCe-eeccHHHHHHH
Q 010101          415 LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVY-TPRNTRLLREAAEVGAT-VVSGVEMFIRQ  492 (518)
Q Consensus       415 ~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y-~P~~T~ll~~A~~~G~~-~i~G~~ml~~Q  492 (518)
                      ..++.. +....++|++|||||+||.+.  ..+.+.+.++++.+++|++| +|.+|+|+++|+++||. +++|++||++|
T Consensus        68 ~~~~~~-~~~~~~~diiIN~tp~g~~~~--~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g~~~v~~Gl~Ml~~Q  144 (171)
T d1p77a1          68 QAVSMD-SIPLQTYDLVINATSAGLSGG--TASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLGLTNVSDGFGMLVAQ  144 (171)
T ss_dssp             EEEEGG-GCCCSCCSEEEECCCC---------CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTTCCCEECSHHHHHHH
T ss_pred             chhhhc-cccccccceeeeccccccccc--ccchhhhhhcccceeeeeeccCcccHHHHHHHHHcCCCcccCcHHHHHHH
Confidence            112111 113567899999999999764  33456667888899999999 58899999999999995 77999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHhh
Q 010101          493 ALGQFRLFTGGLAPEDFMRKLVLEQ  517 (518)
Q Consensus       493 a~~qf~lw~g~~~p~~~~~~~~~~~  517 (518)
                      |+.||++|||.++|.+.|++.+.++
T Consensus       145 a~~~f~iwtg~~~~~~~~~~~l~~~  169 (171)
T d1p77a1         145 AAHSFHLWRGVMPDFVSVYEQLKKA  169 (171)
T ss_dssp             HHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCChHHHHHHHHHH
Confidence            9999999999999999999988764

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-34  Score=240.06  Aligned_cols=99  Identities=33%  Similarity=0.550  Sum_probs=95.6

Q ss_pred             CceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhh
Q 010101          236 DTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLA  313 (518)
Q Consensus       236 ~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  313 (518)
                      ++++|||||+||+||+||.|||.+|+++|+|+.|.++++  ++++++++.+++.+|.|+|||||||+++++++|++|+.|
T Consensus         2 k~~l~GliG~Pi~hS~SP~ihn~~f~~~gi~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a   81 (102)
T d1vi2a2           2 KYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAA   81 (102)
T ss_dssp             CCEEEEEEESCCTTCSHHHHHHHHHHHTTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSTTGGGGGCSEECHHH
T ss_pred             CeEEEEEEcCCcccccCHHHHHHHHHHcCCCcEEeeEeeCchHHHHHHHHhhhhccchhhhhhHHHHHHHHhcccCCHHH
Confidence            578999999999999999999999999999999999998  579999999988899999999999999999999999999


Q ss_pred             hhcCceeEEEEeccCCeEEEeec
Q 010101          314 KSIGAVNTIIRRPIDGKLVGYNT  336 (518)
Q Consensus       314 ~~iGavNTi~~~~~~g~l~G~NT  336 (518)
                      +.+||||||+++  +|+|+||||
T Consensus        82 ~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1vi2a2          82 KLVGAINTIVND--DGYLRGYNT  102 (102)
T ss_dssp             HHHTCCSEEEEE--TTEEEEECH
T ss_pred             HhhCcEEEEEEE--CCEEEEeCC
Confidence            999999999988  899999998

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=5.9e-34  Score=238.89  Aligned_cols=99  Identities=28%  Similarity=0.376  Sum_probs=94.4

Q ss_pred             ceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhh
Q 010101          237 TKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAK  314 (518)
Q Consensus       237 t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  314 (518)
                      +++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++++|++|+.|+
T Consensus         1 M~~~~viG~PI~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1p77a2           1 MDLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAK   80 (101)
T ss_dssp             CEEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHhccccceeeccHHHHHHHHHhccCCHHHH
Confidence            46899999999999999999999999999999999988  5899999999888999999999999999999999999999


Q ss_pred             hcCceeEEEEeccCCeEEEeec
Q 010101          315 SIGAVNTIIRRPIDGKLVGYNT  336 (518)
Q Consensus       315 ~iGavNTi~~~~~~g~l~G~NT  336 (518)
                      .+||||||++.+ +|+|+||||
T Consensus        81 ~igAvNti~~~~-~g~l~G~NT  101 (101)
T d1p77a2          81 LAEACNTLKKLD-DGKLYADNT  101 (101)
T ss_dssp             HHTCCSEEEECT-TSCEEEECC
T ss_pred             HcCeeEEEEECC-CCEEEEecC
Confidence            999999999863 899999999

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.2e-34  Score=238.64  Aligned_cols=99  Identities=32%  Similarity=0.509  Sum_probs=94.3

Q ss_pred             ceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhcccccChhhh
Q 010101          237 TKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVHPLAK  314 (518)
Q Consensus       237 t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  314 (518)
                      ++.|||||+||+||+||.|||.+|+++|+|+.|.++++  +++.++++.++..+|.|+|||||||+++++++|++|+.|+
T Consensus         1 M~~~~liG~pi~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1nyta2           1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAA   80 (101)
T ss_dssp             CCSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCcchhhhhcCChHhHHHHHHHhhhccchhheeehHHHHHHHHHhccCChHHH
Confidence            46799999999999999999999999999999999998  6899999999889999999999999999999999999999


Q ss_pred             hcCceeEEEEeccCCeEEEeec
Q 010101          315 SIGAVNTIIRRPIDGKLVGYNT  336 (518)
Q Consensus       315 ~iGavNTi~~~~~~g~l~G~NT  336 (518)
                      .+||||||++.+ +|+|+||||
T Consensus        81 ~igAvNti~~~~-~g~l~G~NT  101 (101)
T d1nyta2          81 LAGAVNTLMRLE-DGRLLGDNT  101 (101)
T ss_dssp             HHTCCSEEEECT-TSCEEEECC
T ss_pred             HhCcEEEEEECC-CCeEEEeCC
Confidence            999999999863 899999999

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=1.5e-32  Score=233.61  Aligned_cols=103  Identities=44%  Similarity=0.674  Sum_probs=98.9

Q ss_pred             cCCCCceEEEEecCCCCcccCHHHHHHHHHHcCCCceEEeccc--CcHHHHHHHhcCCCCCEEEecccchHHHHhccccc
Q 010101          232 HINPDTKIFGLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLV--DDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEV  309 (518)
Q Consensus       232 ~~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~  309 (518)
                      +++++|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++.+++.++..+|.|+|||||||++++++||++
T Consensus         6 mi~~~tk~~gliG~pi~~S~SP~ihn~~~~~~gi~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~   85 (110)
T d1nvta2           6 MINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEI   85 (110)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEE
T ss_pred             ccCCCccEEEEEcCCcccccCHHHHHHHHHHcCCcEEEeecccCHHHHHHHHHhhcccCcchhheehHHHHHHHHHhccC
Confidence            6788999999999999999999999999999999999999998  47899999998889999999999999999999999


Q ss_pred             ChhhhhcCceeEEEEeccCCeEEEeec
Q 010101          310 HPLAKSIGAVNTIIRRPIDGKLVGYNT  336 (518)
Q Consensus       310 ~~~A~~iGavNTi~~~~~~g~l~G~NT  336 (518)
                      |+.|+.+||||||+++  +|+|+||||
T Consensus        86 s~~a~~igavNti~~~--~~~l~G~NT  110 (110)
T d1nvta2          86 DKDAQLIGAVNTIKIE--DGKAIGYNT  110 (110)
T ss_dssp             CHHHHHHTCCCEEEEE--TTEEEEECC
T ss_pred             CHHHHHhCcEEEEEEE--CCEEEEeCC
Confidence            9999999999999997  899999999

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=2.9e-31  Score=222.52  Aligned_cols=101  Identities=33%  Similarity=0.534  Sum_probs=96.6

Q ss_pred             cCCCCceEE-EEecCCCCcccCHHHHHHHHHHcCCCceEEecccCcHHHHHHHhcCCCCCEEEecccchHHHHhcccccC
Q 010101          232 HINPDTKIF-GLVSNPVGHSKGPILHNPAFRHTRFNGIYVPMLVDDVKEFFRTYSGTDFAGFSVGIPHKEPAVACCDEVH  310 (518)
Q Consensus       232 ~~~~~t~~~-~liG~pi~hS~SP~~hn~~f~~~gl~~~y~~~~~~~l~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  310 (518)
                      +++++|++| +++|+|  ||+||.|||++|+++|+|++|.++++++++++++.++..+|.|+|||||||+++++++|++|
T Consensus         1 mi~~~t~~~~~i~g~P--~s~SP~ihn~~~~~~gi~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~s   78 (102)
T d1npya2           1 MINKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIH   78 (102)
T ss_dssp             CCCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEEC
T ss_pred             CcCCCCEEEEEEcCCc--ccCCHHHHHHHHHHcCCCeEEeeEecccHHHHHHHHhccccceeEEehhHHHHHHHHhhhCC
Confidence            467889995 899999  88999999999999999999999999999999999988899999999999999999999999


Q ss_pred             hhhhhcCceeEEEEeccCCeEEEeec
Q 010101          311 PLAKSIGAVNTIIRRPIDGKLVGYNT  336 (518)
Q Consensus       311 ~~A~~iGavNTi~~~~~~g~l~G~NT  336 (518)
                      +.|+.+||||||+++  +|+|+||||
T Consensus        79 ~~a~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1npya2          79 PSAQAIESVNTIVND--NGFLRAYNT  102 (102)
T ss_dssp             HHHHTTTCCCEEEEE--TTEEEEECH
T ss_pred             hhhhhcCcEEEEEEE--CCEEEEeCC
Confidence            999999999999998  899999998

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.43  E-value=4.6e-14  Score=126.60  Aligned_cols=126  Identities=25%  Similarity=0.416  Sum_probs=95.6

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ++++++++|||+|++|+.++.+|...|+ +|+|+|||.+|++++++.++....+|+++.+ .+.++|+||+||+.+. |.
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~-~l~~~Divi~atss~~-~i   98 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVD-HLARSDVVVSATAAPH-PV   98 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHH-HHHTCSEEEECCSSSS-CC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHH-HhccCCEEEEecCCCC-cc
Confidence            5789999999999999999999999999 8999999999999999999988888888776 5678999999998653 22


Q ss_pred             CCCCCCChhhh---------cCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHHHHHHHH
Q 010101          443 SDQSPVPKEAL---------KAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFIRQALGQ  496 (518)
Q Consensus       443 ~~~~~~~~~~l---------~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~~Qa~~q  496 (518)
                           +..+.+         .+..+++|+.+-+...|-+.......+.-++.+++++.|..+.
T Consensus        99 -----i~~~~i~~~~~~r~~~~~~~iiDlavPr~vd~~v~~~~~v~l~~ld~l~~~~~~n~~~  156 (159)
T d1gpja2          99 -----IHVDDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVRTIDDLRVIARENLER  156 (159)
T ss_dssp             -----BCHHHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGGSTTEEEEEHHHHHHHHHHHHHH
T ss_pred             -----ccHhhhHHHHHhcccCCCeEEEeecCCCCcChhhhccCCeEEEeHHHHHHHHHHHHHH
Confidence                 344333         1235899997543344333332222334567888888876654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.11  E-value=7.7e-11  Score=108.31  Aligned_cols=116  Identities=28%  Similarity=0.373  Sum_probs=85.5

Q ss_pred             EeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          333 GYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       333 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      |+|||+.|.+..+.+..    +        .+++||+++|.|+ ||+|++++..|++.|++|++++|+.++++++++.+.
T Consensus         1 g~~~~~~~~v~~~~~~~----~--------~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~   68 (191)
T d1luaa1           1 GSNTTAAAGVALVVKAA----G--------GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN   68 (191)
T ss_dssp             GHHHHHHHHHHHHHHHT----T--------SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHc----C--------CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence            79999999888765422    2        5799999999995 899999999999999999999999999999988775


Q ss_pred             Cc----c--ccc---ccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhc---CCCEEEEEeeCCC
Q 010101          412 GE----A--LHF---EYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALK---AYELVFDAVYTPR  467 (518)
Q Consensus       412 ~~----~--~~~---~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~---~~~~v~Di~Y~P~  467 (518)
                      ..    .  .+.   +++.+ ...+.|+|||+++.|+..      ++.+.++   ...++.|+.+.|.
T Consensus        69 ~~~~~~~~~~d~~~~~~~~~-~~~~iDilin~Ag~g~~~------~~~e~~~~~~~~nv~~~~~~~~~  129 (191)
T d1luaa1          69 KRFKVNVTAAETADDASRAE-AVKGAHFVFTAGAIGLEL------LPQAAWQNESSIEIVADYNAQPP  129 (191)
T ss_dssp             HHHTCCCEEEECCSHHHHHH-HTTTCSEEEECCCTTCCC------BCHHHHHTCTTCCEEEECCCSSS
T ss_pred             hccchhhhhhhcccHHHHHH-HhcCcCeeeecCcccccc------CCHHHHHhhhcceeehhHhhHHH
Confidence            31    1  111   22333 356789999999876432      3444332   3356777777654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.68  E-value=3.1e-09  Score=94.98  Aligned_cols=112  Identities=21%  Similarity=0.200  Sum_probs=79.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccc------cccccCCCCccEEEEcCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE------YLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~------~l~~~~~~~~divInatp~g~~  440 (518)
                      +|+|+|+|||.+|+.+|..|.+.|++|+|+|||.++++++++.++.......      .... .....|++|.++|....
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDA-EVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHH-HHTTSSEEEECSCGGGH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHh-hhhccceeEeeccchhh
Confidence            5899999999999999999999999999999999999999998864332111      1111 23457888888864311


Q ss_pred             CCCCCCCCChhhhcCCCEEEEEeeCCC-chHHHHHHHHCCCeeec
Q 010101          441 PNSDQSPVPKEALKAYELVFDAVYTPR-NTRLLREAAEVGATVVS  484 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~~~i~  484 (518)
                      .     .....+......++|+.|.+. ...+.+.++..+.....
T Consensus        81 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  120 (182)
T d1e5qa1          81 A-----TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMN  120 (182)
T ss_dssp             H-----HHHHHHHHHTCEEECSSCCCHHHHHTHHHHHHTTCEEEC
T ss_pred             h-----HHHHHHHhhccceeecccCcHHHHHHHHHhccccceeeh
Confidence            0     111234455678899988754 35566777877765543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.09  E-value=3.8e-06  Score=74.04  Aligned_cols=98  Identities=20%  Similarity=0.204  Sum_probs=72.7

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccc----cccccccCCCCccEEEEcCCCCCC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH----FEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~----~~~l~~~~~~~~divInatp~g~~  440 (518)
                      .+..+|+|||+|-+|+.++..+..+|++|++++++.++.+++.+.++.....    -+.+.+ .+.++|+||.|.-+.-.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~-~~~~aDivI~aalipG~  108 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIET-AVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHH-HHHTCSEEEECCCCTTS
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHH-hhccCcEEEEeeecCCc
Confidence            4568999999999999999999999999999999999999998887643211    112333 45679999988743211


Q ss_pred             CCCCCCCCChhh---hcCCCEEEEEeeC
Q 010101          441 PNSDQSPVPKEA---LKAYELVFDAVYT  465 (518)
Q Consensus       441 ~~~~~~~~~~~~---l~~~~~v~Di~Y~  465 (518)
                        ..+..+..+.   ++++.+++|+.-.
T Consensus       109 --~aP~lIt~~mv~~Mk~GSVIVDvaid  134 (168)
T d1pjca1         109 --RAPILVPASLVEQMRTGSVIVDVAVD  134 (168)
T ss_dssp             --SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred             --ccCeeecHHHHhhcCCCcEEEEeecC
Confidence              1223466654   5789999999764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.86  E-value=0.00013  Score=66.15  Aligned_cols=130  Identities=18%  Similarity=0.209  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccc
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF  417 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~  417 (518)
                      +.|...+++..++.. |       ..+++|++|+|-|.|.+|+.++..|.+.|++|++++.+.++.... ..++.+.++.
T Consensus         6 a~Gv~~~~~~~~~~~-g-------~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~-~~~g~~~~~~   76 (201)
T d1c1da1           6 AVGVFEAMKATVAHR-G-------LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA-VALGHTAVAL   76 (201)
T ss_dssp             HHHHHHHHHHHHHHT-T-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEECCG
T ss_pred             HHHHHHHHHHHHHHh-C-------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH-HhhcccccCc
Confidence            578888887766543 2       136899999999999999999999999999999999998887654 3455555555


Q ss_pred             ccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhc--CCCEEEEEeeCCCchH-HHHHHHHCCCeeeccHH
Q 010101          418 EYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALK--AYELVFDAVYTPRNTR-LLREAAEVGATVVSGVE  487 (518)
Q Consensus       418 ~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~--~~~~v~Di~Y~P~~T~-ll~~A~~~G~~~i~G~~  487 (518)
                      +++-.   .++||++-|..-+        .+..+..+  +..+++.-.-+|..++ .-+..+++|+.++|..-
T Consensus        77 ~~~~~---~~~DI~iPcA~~~--------~I~~~~a~~i~ak~i~e~AN~p~~~~~~~~~L~~rgI~~iPD~l  138 (201)
T d1c1da1          77 EDVLS---TPCDVFAPCAMGG--------VITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFV  138 (201)
T ss_dssp             GGGGG---CCCSEEEECSCSC--------CBCHHHHHHCCCSEECCSCTTCBCSHHHHHHHHHTTCEECCHHH
T ss_pred             ccccc---ccceeeecccccc--------cccHHHHhhhhhheeeccCCCCcchhhHHHHhcccceEEEehhh
Confidence            55432   4689999664322        14443221  3467777777776655 44566899999887643

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.86  E-value=8.4e-06  Score=71.60  Aligned_cols=110  Identities=13%  Similarity=0.125  Sum_probs=74.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV  448 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~  448 (518)
                      +|-|||.|-||+++|..|.+.|++|+++||++++++++.+.......+..+    ...++|+||-+.|-+-  ......+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e----~~~~~d~ii~~v~~~~--~v~~v~~   75 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKA----IAEQCDVIITMLPNSP--HVKEVAL   75 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHH----HHHHCSEEEECCSSHH--HHHHHHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHH----HHhCCCeEEEEcCCHH--HHHHHHh
Confidence            588999999999999999999999999999999999887653322222222    2346899998876321  0000000


Q ss_pred             C----hhhhcCCCEEEEEeeCCCch--HHHHHHHHCCCeeec
Q 010101          449 P----KEALKAYELVFDAVYTPRNT--RLLREAAEVGATVVS  484 (518)
Q Consensus       449 ~----~~~l~~~~~v~Di~Y~P~~T--~ll~~A~~~G~~~i~  484 (518)
                      .    ...++++.+++|+......|  .+.+.++++|..+++
T Consensus        76 ~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd  117 (161)
T d1vpda2          76 GENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLD  117 (161)
T ss_dssp             STTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceec
Confidence            0    12346788999998864332  344566677887654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=3.3e-05  Score=61.30  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=34.7

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      +++||+++|+|.|.+|++++..|.+.|++|++++.+..
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            47899999999999999999999999999999998643

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.84  E-value=1.9e-05  Score=68.60  Aligned_cols=65  Identities=25%  Similarity=0.250  Sum_probs=52.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      ++.+||+|-||.+++..|.+.|. +|++++|+++++++++++++....  ++.+  ...++|+||-|+++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~--~~~~--~v~~~Div~lavkP   67 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETS--ATLP--ELHSDDVLILAVKP   67 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEE--SSCC--CCCTTSEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccc--cccc--cccccceEEEecCH
Confidence            68999999999999999988884 999999999999999998875432  2222  34568999988863

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=2.9e-05  Score=72.77  Aligned_cols=74  Identities=22%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc-c--ccccc---ccc--cCCCCccEEEEc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE-A--LHFEY---LHE--FFPEKGMILANA  434 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~-~--~~~~~---l~~--~~~~~~divIna  434 (518)
                      +|+||++||.|+ +|.|++++..|++.|++|.+++|+.+++++++++++.. .  .++.+   ++.  ......|++||+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnn   81 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN   81 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEEC
Confidence            478999999998 58999999999999999999999999999999887532 1  12211   111  024568999998


Q ss_pred             CCC
Q 010101          435 SAI  437 (518)
Q Consensus       435 tp~  437 (518)
                      ...
T Consensus        82 Ag~   84 (242)
T d1cyda_          82 AAL   84 (242)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3.1e-05  Score=72.62  Aligned_cols=74  Identities=23%  Similarity=0.311  Sum_probs=57.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc-c--ccccc---c---cccCCCCccEEEE
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE-A--LHFEY---L---HEFFPEKGMILAN  433 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~-~--~~~~~---l---~~~~~~~~divIn  433 (518)
                      .++||++||.|+ +|.|++++..|++.|++|.+++|+.+++++++++++.. .  .++.+   +   -+ .....|++||
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~-~~g~iDilVn   82 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALG-SVGPVDLLVN   82 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHT-TCCCCCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHH-HhCCceEEEe
Confidence            478999999988 58999999999999999999999999999999888632 1  12211   1   11 3456899999


Q ss_pred             cCCCC
Q 010101          434 ASAIG  438 (518)
Q Consensus       434 atp~g  438 (518)
                      +....
T Consensus        83 nAg~~   87 (244)
T d1pr9a_          83 NAAVA   87 (244)
T ss_dssp             CCCCC
T ss_pred             ccccc
Confidence            87543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.80  E-value=7.6e-06  Score=72.02  Aligned_cols=111  Identities=14%  Similarity=0.145  Sum_probs=75.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCC-
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQS-  446 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~-  446 (518)
                      ++|.|||.|-||.+++..|.+.|++|+++||+.++.+.+.+.-.....+..+    ....+|+++.+.+..-..  ... 
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e----~~~~~diii~~v~~~~~~--~~v~   75 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARD----AVQGADVVISMLPASQHV--EGLY   75 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHH----HHTSCSEEEECCSCHHHH--HHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhh----hccccCeeeecccchhhH--HHHH
Confidence            4799999999999999999999999999999999988876543222212222    234679999887643110  000 


Q ss_pred             --CC-ChhhhcCCCEEEEEeeC-CCc-hHHHHHHHHCCCeeec
Q 010101          447 --PV-PKEALKAYELVFDAVYT-PRN-TRLLREAAEVGATVVS  484 (518)
Q Consensus       447 --~~-~~~~l~~~~~v~Di~Y~-P~~-T~ll~~A~~~G~~~i~  484 (518)
                        .- -...+.++.+++|+... |.. ..+-+.++++|..+++
T Consensus        76 ~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~d  118 (162)
T d3cuma2          76 LDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLD  118 (162)
T ss_dssp             HSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEe
Confidence              00 01235678899999776 443 3555667788877663

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.9e-05  Score=74.13  Aligned_cols=72  Identities=31%  Similarity=0.363  Sum_probs=56.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---c-------cccCCCCcc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---L-------HEFFPEKGM  429 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l-------~~~~~~~~d  429 (518)
                      ++||.++|.|+ +|.|++++..|++.|++|.+++|+.+++++++++++....    ++.+   +       .+ .....|
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~-~~g~iD   80 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRA-EFGEVD   80 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHH-HTCSCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhc-ccCCcc
Confidence            68999999987 5899999999999999999999999999999999875321    1111   1       11 234689


Q ss_pred             EEEEcCCC
Q 010101          430 ILANASAI  437 (518)
Q Consensus       430 ivInatp~  437 (518)
                      ++||+...
T Consensus        81 ilVnnAg~   88 (243)
T d1q7ba_          81 ILVNNAGI   88 (243)
T ss_dssp             EEEECCCC
T ss_pred             eehhhhhh
Confidence            99998644

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.77  E-value=5.2e-06  Score=74.12  Aligned_cols=112  Identities=20%  Similarity=0.212  Sum_probs=75.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc-----ccccccccccCCCCccEEEEcCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE-----ALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~-----~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .++|-|||.|-||.+++..|.+.|++|+++||++++++++.+.-...     ....+++.+ ....+|++|.+.+.+-. 
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~ii~~~~~~~~-   79 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVS-KLKKPRRIILLVKAGQA-   79 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHH-HBCSSCEEEECSCTTHH-
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhh-hhcccceEEEecCchHH-
Confidence            36799999999999999999999999999999999999997753211     112223322 34567888877654310 


Q ss_pred             CCCCCCCCh---hhhcCCCEEEEEeeC-CCch-HHHHHHHHCCCeee
Q 010101          442 NSDQSPVPK---EALKAYELVFDAVYT-PRNT-RLLREAAEVGATVV  483 (518)
Q Consensus       442 ~~~~~~~~~---~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~i  483 (518)
                       ..  .+..   ..++++.+++|+... |..| .+.+..+++|..++
T Consensus        80 -v~--~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~l  123 (176)
T d2pgda2          80 -VD--NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (176)
T ss_dssp             -HH--HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             -HH--HHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCcee
Confidence             00  0111   234677899999775 4443 44466677887643

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.76  E-value=0.00047  Score=63.62  Aligned_cols=134  Identities=14%  Similarity=0.147  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccc
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF  417 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~  417 (518)
                      +.|...+++..+....|       ..+++|++++|-|.|.+|+.++..|.+.|++|++++.+..+.+.+....+...++.
T Consensus        17 g~GV~~~~~~~~~~~~g-------~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~   89 (230)
T d1leha1          17 AYGVYRGMKAAAKEAFG-------SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAP   89 (230)
T ss_dssp             HHHHHHHHHHHHHHHHS-------SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCG
T ss_pred             HHHHHHHHHHHHHHhcC-------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCC
Confidence            56777777765544322       25689999999999999999999999999999999999999999888888766555


Q ss_pred             ccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchH-HHHHHHHCCCeeeccHH
Q 010101          418 EYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTR-LLREAAEVGATVVSGVE  487 (518)
Q Consensus       418 ~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~-ll~~A~~~G~~~i~G~~  487 (518)
                      +++-   ...+||++-|.--+.   ++...  ...++ ..+|+.-.-+|..|| -.+.-+++|+.+++-.-
T Consensus        90 ~~~~---~~~cDIl~PcA~~~~---I~~~~--~~~l~-ak~Ive~ANn~~t~~ea~~~L~~rGI~~iPD~l  151 (230)
T d1leha1          90 NAIY---GVTCDIFAPCALGAV---LNDFT--IPQLK-AKVIAGSADNQLKDPRHGKYLHELGIVYAPDYV  151 (230)
T ss_dssp             GGTT---TCCCSEEEECSCSCC---BSTTH--HHHCC-CSEECCSCSCCBSSHHHHHHHHHHTCEECCHHH
T ss_pred             cccc---cccccEecccccccc---cChHH--hhccC-ccEEEecccCCCCCchHHHHHHhhCcEEEeehh
Confidence            5442   246899997764332   12111  11233 467888887776653 44556789998887543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.71  E-value=2.3e-05  Score=74.17  Aligned_cols=75  Identities=24%  Similarity=0.240  Sum_probs=57.4

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----ccc---ccccc------CCCCcc
Q 010101          364 PIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFE---YLHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~---~l~~~------~~~~~d  429 (518)
                      +|+||+++|.|++ |+|++++..|++.|++|.+++|+.+++++++++++....    ++.   ++...      .....|
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVD   81 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCcc
Confidence            4789999999985 899999999999999999999999999999998875321    111   11100      124579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus        82 ilVnnAg~~   90 (254)
T d1hdca_          82 GLVNNAGIS   90 (254)
T ss_dssp             EEEECCCCC
T ss_pred             EEEecCccc
Confidence            999987543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.71  E-value=2.7e-05  Score=73.08  Aligned_cols=73  Identities=19%  Similarity=0.192  Sum_probs=56.6

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--ccc---ccccc------CCCCccEEE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFE---YLHEF------FPEKGMILA  432 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~---~l~~~------~~~~~divI  432 (518)
                      ++||+++|.|+ +|.|++++..|++.|++|.+++|+.+++++++++++...+  ++.   ++..+      .....|++|
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   82 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            67899999987 6899999999999999999999999999999998875432  211   11110      124579999


Q ss_pred             EcCCC
Q 010101          433 NASAI  437 (518)
Q Consensus       433 natp~  437 (518)
                      |+...
T Consensus        83 nnAG~   87 (242)
T d1ulsa_          83 HYAGI   87 (242)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            98754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=4.1e-05  Score=71.88  Aligned_cols=75  Identities=21%  Similarity=0.224  Sum_probs=57.5

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~d  429 (518)
                      .|+||.++|.|+ +|.|++++..|++.|++|.+++|+.+++++++++++....    ++.+   +.+.      .....|
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCe
Confidence            578999999988 6899999999999999999999999999999999874321    1111   1100      124579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus        83 ilinnAG~~   91 (244)
T d1nffa_          83 VLVNNAGIL   91 (244)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCccc
Confidence            999987543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.68  E-value=2.5e-05  Score=73.87  Aligned_cols=73  Identities=32%  Similarity=0.344  Sum_probs=57.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCccE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKGMI  430 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~di  430 (518)
                      |+||+++|.|+ +|.|++++..|++.|++|.+++|+.+++++++++++....    ++.+   +...      .....|+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            67999999988 6899999999999999999999999999999999975432    1111   1100      1245799


Q ss_pred             EEEcCCC
Q 010101          431 LANASAI  437 (518)
Q Consensus       431 vInatp~  437 (518)
                      +||+...
T Consensus        83 lVnnAg~   89 (256)
T d1k2wa_          83 LVNNAAL   89 (256)
T ss_dssp             EEECCCC
T ss_pred             EEeeccc
Confidence            9998754

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.68  E-value=5.1e-05  Score=71.44  Aligned_cols=50  Identities=22%  Similarity=0.278  Sum_probs=45.7

Q ss_pred             CcccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          362 TSPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       362 ~~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ...++||.++|.|+ +|.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~   55 (251)
T d2c07a1           5 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK   55 (251)
T ss_dssp             CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence            36789999999988 589999999999999999999999999999988874

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=0.00018  Score=62.94  Aligned_cols=116  Identities=19%  Similarity=0.210  Sum_probs=83.2

Q ss_pred             cccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .++.||+++|+|-+. .|+.++.-|.+.|+.|++++......++.                  ..++|++|.|+..   |
T Consensus        33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~------------------~~~ADivI~a~G~---p   91 (166)
T d1b0aa1          33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHH------------------VENADLLIVAVGK---P   91 (166)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHH------------------HHHCSEEEECSCC---T
T ss_pred             cccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHH------------------HhhhhHhhhhccC---c
Confidence            678999999999997 99999999999999999998754332221                  2357999988753   2


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeCCCc-------hHHHHHHHHCCCe--eeccH-----HHHHHHHHHHHHHhcCC
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYTPRN-------TRLLREAAEVGAT--VVSGV-----EMFIRQALGQFRLFTGG  503 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~P~~-------T~ll~~A~~~G~~--~i~G~-----~ml~~Qa~~qf~lw~g~  503 (518)
                      +    .+..++++++.+|+|+-.+..+       -.+-...+...+.  +-.|.     -||+...+.+++-|...
T Consensus        92 ~----~i~~~~vk~g~vvIDvGi~~~~~~~~~Gdvd~~~v~~~a~~~TPvPGGVGP~Tva~L~~N~v~a~~~~~~~  163 (166)
T d1b0aa1          92 G----FIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDP  163 (166)
T ss_dssp             T----CBCTTTSCTTCEEEECCCEECTTSCEECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             c----cccccccCCCcEEEecCceecCCCCEEeccccHhHHhheeEeCCCCCcccHHHHHHHHHHHHHHHHHHhCc
Confidence            2    3677889999999998776421       1222333344432  33445     49999999999998754

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.66  E-value=6.3e-05  Score=65.84  Aligned_cols=100  Identities=18%  Similarity=0.141  Sum_probs=66.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV  448 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~  448 (518)
                      |+.|||+|-||.+++.+|.+.|++|++++|+.+++++..+ .+......++++  ...++|+||-|+|.+....    .+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-~~~~~~~~~~~~--~~~~~DiIilavp~~~~~~----vl   74 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-RQLVDEAGQDLS--LLQTAKIIFLCTPIQLILP----TL   74 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TTSCSEEESCGG--GGTTCSEEEECSCHHHHHH----HH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-hhccceeeeecc--cccccccccccCcHhhhhh----hh
Confidence            6899999999999999999999999999999988776543 332111122222  3467999999998542110    01


Q ss_pred             C--hhhhcCCCEEEEEeeCCCchHHHHHHHH
Q 010101          449 P--KEALKAYELVFDAVYTPRNTRLLREAAE  477 (518)
Q Consensus       449 ~--~~~l~~~~~v~Di~Y~P~~T~ll~~A~~  477 (518)
                      .  ...++++.+|.|+...  .....+..++
T Consensus        75 ~~l~~~l~~~~iv~~~~s~--~~~~~~~~~~  103 (165)
T d2f1ka2          75 EKLIPHLSPTAIVTDVASV--KTAIAEPASQ  103 (165)
T ss_dssp             HHHGGGSCTTCEEEECCSC--CHHHHHHHHH
T ss_pred             hhhhhhcccccceeecccc--chHHHHHHHH
Confidence            1  1235678899998644  3444444444

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.65  E-value=2.2e-05  Score=68.22  Aligned_cols=87  Identities=16%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-ccccccccCCCCccEEEEcCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-HFEYLHEFFPEKGMILANASAIGMEPNSDQSP  447 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-~~~~l~~~~~~~~divInatp~g~~~~~~~~~  447 (518)
                      ++.|||+|-||.+++..|.+.|.+|++++|+.+++++++++++.... +.+++    ..++|+||-|+++...+.     
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~----~~~~dvIilavkp~~~~~-----   72 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDL----IDQVDLVILGIKPQLFET-----   72 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHH----HHTCSEEEECSCGGGHHH-----
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhh----hhccceeeeecchHhHHH-----
Confidence            58899999999999999999899999999999999999998875542 23232    346899998885432110     


Q ss_pred             CChhhhcCCCEEEEEeeC
Q 010101          448 VPKEALKAYELVFDAVYT  465 (518)
Q Consensus       448 ~~~~~l~~~~~v~Di~Y~  465 (518)
                      + ...+++..+++++.-.
T Consensus        73 v-l~~l~~~~~iis~~ag   89 (152)
T d2ahra2          73 V-LKPLHFKQPIISMAAG   89 (152)
T ss_dssp             H-HTTSCCCSCEEECCTT
T ss_pred             H-hhhcccceeEeccccc
Confidence            1 1124556777777654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=4.5e-05  Score=71.61  Aligned_cols=77  Identities=18%  Similarity=0.317  Sum_probs=58.8

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---cc----ccccc---c-------cccC
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG---EA----LHFEY---L-------HEFF  424 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~---~~----~~~~~---l-------~~~~  424 (518)
                      .++.||.++|.|+ +|.|++++..|++.|++|.+++|+.++++++++++..   +.    .++.+   +       .+ .
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~-~   81 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA-E   81 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH-H
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH-H
Confidence            3588999999988 4899999999999999999999999999999887742   11    12211   1       11 2


Q ss_pred             CCCccEEEEcCCCCCC
Q 010101          425 PEKGMILANASAIGME  440 (518)
Q Consensus       425 ~~~~divInatp~g~~  440 (518)
                      ....|++||+...+..
T Consensus        82 ~g~idilinnag~~~~   97 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYT   97 (244)
T ss_dssp             TCCCSEEEECCCCCCC
T ss_pred             cCCCceeEeecccccc
Confidence            3567999999876643

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.63  E-value=4.1e-05  Score=67.76  Aligned_cols=70  Identities=16%  Similarity=0.153  Sum_probs=53.0

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc----c-------c-ccccccccCCCCccEEEEcC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE----A-------L-HFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~----~-------~-~~~~l~~~~~~~~divInat  435 (518)
                      |++.|||+|.+|.+++..|++.|++|++++|++++.+.+.+.-...    .       . ...++.+ ...++|+||-++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~aD~iii~v   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL-AVKDADVILIVV   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH-HHTTCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh-HhcCCCEEEEEE
Confidence            7899999999999999999999999999999999998876543210    0       0 0112222 346789999999


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      |..
T Consensus        81 ~~~   83 (184)
T d1bg6a2          81 PAI   83 (184)
T ss_dssp             CGG
T ss_pred             chh
Confidence            754

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.63  E-value=4.4e-05  Score=71.99  Aligned_cols=75  Identities=19%  Similarity=0.210  Sum_probs=57.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~d  429 (518)
                      .++||.++|.|+ +|.|++++..|++.|++|.+++|+.+++++++++++....    ++.+   +...      .....|
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD   82 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            378999999987 5899999999999999999999999999999999975432    1111   1100      124579


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      ++||+....
T Consensus        83 ilVnnAG~~   91 (253)
T d1hxha_          83 VLVNNAGIL   91 (253)
T ss_dssp             EEEECCCCC
T ss_pred             eEEeccccc
Confidence            999987543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=1.6e-05  Score=68.89  Aligned_cols=64  Identities=27%  Similarity=0.274  Sum_probs=46.0

Q ss_pred             EEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCC
Q 010101          371 VLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       371 lvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g  438 (518)
                      -+||+|-||++++..|.+.+..+.|+||+.++++++++.++....+..+    ...++|+||-|+|..
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~----~~~~~DiVil~v~d~   66 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEK----HPELNGVVFVIVPDR   66 (153)
T ss_dssp             EEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCC----CCC---CEEECSCTT
T ss_pred             EEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhh----hhccCcEEEEeccch
Confidence            4899999999999988664335579999999999999998765544333    456789999988743

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.60  E-value=7.7e-05  Score=66.35  Aligned_cols=97  Identities=16%  Similarity=0.138  Sum_probs=68.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccc-----cc--------------------
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHF-----EY--------------------  419 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~-----~~--------------------  419 (518)
                      ++..+|+|||+|-+|..++.....+|++|++++.+.++.+++-+.++. .+..     ++                    
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~-~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK-FITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE-ECCC-----------------------CCHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcc-eEEEeccccccccccccchhhcCHHHHHHHH
Confidence            456799999999999999999999999999999999998888665432 1110     00                    


Q ss_pred             --ccccCCCCccEEEEcCCCCCCCCCCCCCCChhh---hcCCCEEEEEeeC
Q 010101          420 --LHEFFPEKGMILANASAIGMEPNSDQSPVPKEA---LKAYELVFDAVYT  465 (518)
Q Consensus       420 --l~~~~~~~~divInatp~g~~~~~~~~~~~~~~---l~~~~~v~Di~Y~  465 (518)
                        +.+ .+.++|+||.|.-+.-.+  .+..+.++.   ++++.+++|+.-.
T Consensus       106 ~~l~~-~l~~aDlVI~talipG~~--aP~lit~~mv~~Mk~GSVIVDvaid  153 (183)
T d1l7da1         106 EAVLK-ELVKTDIAITTALIPGKP--APVLITEEMVTKMKPGSVIIDLAVE  153 (183)
T ss_dssp             HHHHH-HHTTCSEEEECCCCTTSC--CCCCSCHHHHTTSCTTCEEEETTGG
T ss_pred             HHHHH-HHHhhhhheeeeecCCcc--cceeehHHHHHhcCCCcEEEEEeec
Confidence              111 246799999876432111  223466653   5789999999753

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00046  Score=60.64  Aligned_cols=113  Identities=27%  Similarity=0.256  Sum_probs=79.2

Q ss_pred             cccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .+++||+++|+|.+. .||.++.-|.+.|+.|++++......++                  ...++|++|.+++.   |
T Consensus        35 i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~------------------~~~~aDivi~a~G~---~   93 (170)
T d1a4ia1          35 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDE------------------EVNKGDILVVATGQ---P   93 (170)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHH------------------HHTTCSEEEECCCC---T
T ss_pred             cccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHH------------------HHhhccchhhcccc---c
Confidence            678999999999987 9999999999999999999975433221                  22468999988753   2


Q ss_pred             CCCCCCCChhhhcCCCEEEEEeeCCCch-------------HHHHHHHHC-CC-eeec-cHH-----HHHHHHHHHHHHh
Q 010101          442 NSDQSPVPKEALKAYELVFDAVYTPRNT-------------RLLREAAEV-GA-TVVS-GVE-----MFIRQALGQFRLF  500 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~~~v~Di~Y~P~~T-------------~ll~~A~~~-G~-~~i~-G~~-----ml~~Qa~~qf~lw  500 (518)
                      +    .+..++++++.+|+|+-.++.+.             .+ ..++++ .+ .-++ |.+     ||+...+...+-|
T Consensus        94 ~----~i~~~~vk~g~iviDvgi~~~~~~~~~~~~~~~gdvd~-~~v~~~a~~~TPvPGGVGp~Tva~L~~N~v~a~~r~  168 (170)
T d1a4ia1          94 E----MVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAY-DEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRF  168 (170)
T ss_dssp             T----CBCGGGSCTTCEEEECCCBC----------CCBCSBCH-HHHTTTCSEECCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             c----ccccccccCCCeEeccCcccccccccCCCCEEecccch-HhhhhhceEeCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence            2    36788999999999998764321             11 222222 22 1123 554     8888888888777


Q ss_pred             c
Q 010101          501 T  501 (518)
Q Consensus       501 ~  501 (518)
                      .
T Consensus       169 l  169 (170)
T d1a4ia1         169 L  169 (170)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=7.5e-05  Score=70.24  Aligned_cols=74  Identities=22%  Similarity=0.327  Sum_probs=56.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc---cccc---ccccc------CCCCccE
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA---LHFE---YLHEF------FPEKGMI  430 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~---~~~~---~l~~~------~~~~~di  430 (518)
                      .|+||+++|.|+ +|+|++++..|++.|++|.+++|+.+++++++++++...   .++.   ++...      .....|+
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi   82 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDC   82 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            578999999998 689999999999999999999999999999999876421   1221   11110      1245799


Q ss_pred             EEEcCCC
Q 010101          431 LANASAI  437 (518)
Q Consensus       431 vInatp~  437 (518)
                      +||+...
T Consensus        83 lVnnAG~   89 (250)
T d1ydea1          83 VVNNAGH   89 (250)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9998753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.56  E-value=4.5e-05  Score=67.39  Aligned_cols=43  Identities=28%  Similarity=0.435  Sum_probs=39.9

Q ss_pred             EEEEE-ccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          369 IFVLV-GAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       369 ~vlvl-GaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      |+.|+ |+|++|++++..|++.|++|++++|+++++++++++++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            57788 88999999999999999999999999999999988775

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.55  E-value=7.4e-05  Score=70.30  Aligned_cols=49  Identities=29%  Similarity=0.431  Sum_probs=45.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG  412 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~  412 (518)
                      .|+||.++|.|+ +|+|++++..|++.|++|.+++|+.+++++++++++.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~   52 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT   52 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC
Confidence            378999999987 6899999999999999999999999999999998863

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.55  E-value=0.00013  Score=63.52  Aligned_cols=93  Identities=23%  Similarity=0.216  Sum_probs=66.0

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV-SGEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~-~~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      .-+.||+++|+|.|-.||.+|..|..+|++|+|+.+++-+|-+-  .+ |.+..+.++    .++.+|++|-||.-  ..
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA--~mdGf~v~~~~~----a~~~aDi~vTaTGn--~~   90 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA--VMEGFNVVTLDE----IVDKGDFFITCTGN--VD   90 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH--HTTTCEECCHHH----HTTTCSEEEECCSS--SS
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH--HhcCCccCchhH----ccccCcEEEEcCCC--Cc
Confidence            56889999999999999999999999999999999999776443  22 223334433    45678999988852  22


Q ss_pred             CCCCCCCChh---hhcCCCEEEEEeeCCCc
Q 010101          442 NSDQSPVPKE---ALKAYELVFDAVYTPRN  468 (518)
Q Consensus       442 ~~~~~~~~~~---~l~~~~~v~Di~Y~P~~  468 (518)
                           -+..+   .++.+.++.-+-....+
T Consensus        91 -----vI~~~h~~~MKdgaIl~N~GHfd~E  115 (163)
T d1v8ba1          91 -----VIKLEHLLKMKNNAVVGNIGHFDDE  115 (163)
T ss_dssp             -----SBCHHHHTTCCTTCEEEECSSTTTS
T ss_pred             -----cccHHHHHHhhCCeEEEeccccchh
Confidence                 13433   24666777666544433

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00021  Score=62.39  Aligned_cols=91  Identities=24%  Similarity=0.238  Sum_probs=64.4

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCcccccccccccCCCCccEEEEcCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV-SGEALHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~-~~~~~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      ..+.||+++|+|.|-.||.+|..|...|++|+++.+++-++-+  ..+ +....++++    ....+|++|-||.-  ..
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~--A~~dG~~v~~~~~----a~~~adivvtaTGn--~~   91 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQ--AAMEGYEVTTMDE----ACQEGNIFVTTTGC--ID   91 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH--HHHTTCEECCHHH----HTTTCSEEEECSSC--SC
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHH--hhcCceEeeehhh----hhhhccEEEecCCC--cc
Confidence            5689999999999999999999999999999999999877533  333 334444443    34568999988752  21


Q ss_pred             CCCCCCCChh---hhcCCCEEEEEeeCC
Q 010101          442 NSDQSPVPKE---ALKAYELVFDAVYTP  466 (518)
Q Consensus       442 ~~~~~~~~~~---~l~~~~~v~Di~Y~P  466 (518)
                           .+..+   .++++.++.-+-...
T Consensus        92 -----vI~~eh~~~MKdgaIL~N~Ghfd  114 (163)
T d1li4a1          92 -----IILGRHFEQMKDDAIVCNIGHFD  114 (163)
T ss_dssp             -----SBCHHHHTTCCTTEEEEECSSST
T ss_pred             -----chhHHHHHhccCCeEEEEecccc
Confidence                 24443   346666666654333

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.51  E-value=6.2e-05  Score=70.40  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=56.7

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCcc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKGM  429 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~d  429 (518)
                      .|+||++||.|+ +|.|++++..|++.|++|++.+|+.++++++.++++.+..    ++.+   +.+.      .....|
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iD   81 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLH   81 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            368999999988 5799999999999999999999999999999999876432    1111   1100      124579


Q ss_pred             EEEEcCCC
Q 010101          430 ILANASAI  437 (518)
Q Consensus       430 ivInatp~  437 (518)
                      ++||+...
T Consensus        82 iLinnAg~   89 (241)
T d2a4ka1          82 GVAHFAGV   89 (241)
T ss_dssp             EEEEGGGG
T ss_pred             Eecccccc
Confidence            99997643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.50  E-value=0.00019  Score=61.79  Aligned_cols=74  Identities=19%  Similarity=0.240  Sum_probs=52.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc------c-cccccccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE------A-LHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~------~-~~~~~l~~~~~~~~divInatp~  437 (518)
                      .+|+.|||+|.+|.++++.|+..|.  +|.+++++.++++..+.++...      . ..-.+.+  ...++|+||.|...
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~--~~~~adivvitag~   82 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS--DCKDADLVVITAGA   82 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG--GGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH--HhccccEEEEeccc
Confidence            4689999999999999999998884  8999999999998887666421      0 1111222  34679999998876


Q ss_pred             CCCCC
Q 010101          438 GMEPN  442 (518)
Q Consensus       438 g~~~~  442 (518)
                      ...|.
T Consensus        83 ~~~~g   87 (146)
T d1ez4a1          83 PQKPG   87 (146)
T ss_dssp             -----
T ss_pred             ccCCC
Confidence            55443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.50  E-value=0.00013  Score=61.36  Aligned_cols=116  Identities=12%  Similarity=0.196  Sum_probs=76.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-----ccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-----HFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-----~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      +|+|+|+|..|+.++..|.+.|.+|+++++++++.++++++++...+     +.+-+.+..+.++|.++-+|+-.     
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d-----   76 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE-----   76 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH-----
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH-----
Confidence            68999999999999999999999999999999999999888764332     22223333467889999877521     


Q ss_pred             CCCCCCh----hhhcCCCEEEEEeeCCCchHHHHHHHHCCCe-eeccHHHHHHHHHH
Q 010101          444 DQSPVPK----EALKAYELVFDAVYTPRNTRLLREAAEVGAT-VVSGVEMFIRQALG  495 (518)
Q Consensus       444 ~~~~~~~----~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~-~i~G~~ml~~Qa~~  495 (518)
                       +.-+-.    ..+....++ =.+.+|...   +..++.|.. +++ -+++..+.+.
T Consensus        77 -~~N~~~~~~~k~~~~~~iI-~~~~~~~~~---~~l~~~G~d~vi~-p~~~~a~~i~  127 (132)
T d1lssa_          77 -EVNLMSSLLAKSYGINKTI-ARISEIEYK---DVFERLGVDVVVS-PELIAANYIE  127 (132)
T ss_dssp             -HHHHHHHHHHHHTTCCCEE-EECSSTTHH---HHHHHTTCSEEEC-HHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCceEE-EEecCHHHH---HHHHHCCCCEEEC-HHHHHHHHHH
Confidence             100100    113334443 345555443   566778984 554 4455555443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.48  E-value=8.2e-05  Score=70.28  Aligned_cols=49  Identities=22%  Similarity=0.272  Sum_probs=44.9

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ++++||+|||.|+ +|+|++++..|++.|++|.+++|+.++++++++++.
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~   51 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR   51 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            4689999999986 789999999999999999999999999999888775

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.44  E-value=0.00012  Score=69.24  Aligned_cols=49  Identities=20%  Similarity=0.205  Sum_probs=45.3

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .+++||.++|.|+ +|+|++++..|++.|++|.+++|+.++++++++++.
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~   53 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR   53 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            5789999999998 589999999999999999999999999999988774

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=8.7e-05  Score=69.32  Aligned_cols=49  Identities=22%  Similarity=0.347  Sum_probs=45.4

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG  412 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~  412 (518)
                      +++||.++|.|+ +|.|++++..|++.|++|++++|+.+++++++++++.
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~   51 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGN   51 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC
Confidence            478999999988 5899999999999999999999999999999999864

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=6.3e-05  Score=69.96  Aligned_cols=70  Identities=29%  Similarity=0.224  Sum_probs=50.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccc----cccccCCCCccEEEEcCCC
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFE----YLHEFFPEKGMILANASAI  437 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~----~l~~~~~~~~divInatp~  437 (518)
                      ++||++||.|+ +|.|++++..|++.|++|.+++|+.+++++...++-  ..++.    .+.+ .....|++||+...
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~--~~Dv~~~~~~~~~-~~g~iD~lVnnAG~   76 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV--VCDLRKDLDLLFE-KVKEVDILVLNAGG   76 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEE--ECCTTTCHHHHHH-HSCCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEE--EcchHHHHHHHHH-HhCCCcEEEecccc
Confidence            57899999998 689999999999999999999999887765432221  11221    1112 24568999998653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.37  E-value=0.0002  Score=58.55  Aligned_cols=73  Identities=14%  Similarity=0.117  Sum_probs=48.6

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERA-KALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka-~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      .+++||+++|+|+|.+|.+-+..|.+.|++|++++.+.... +.+++.-+..... .......+.++++++.+|.
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~-~~~~~~dl~~~~lv~~at~   81 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVE-GPFDETLLDSCWLAIAATD   81 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEE-SSCCGGGGTTCSEEEECCS
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeec-cCCCHHHhCCCcEEeecCC
Confidence            46889999999999999999999999999999999876542 2333321111110 0111112445788887764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=5.7e-05  Score=70.85  Aligned_cols=72  Identities=24%  Similarity=0.302  Sum_probs=54.6

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--ccc------cccccCCCCccEEEEcC
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HFE------YLHEFFPEKGMILANAS  435 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~~------~l~~~~~~~~divInat  435 (518)
                      ++||++||.|+ +|.|++++..|++.|++|.+++|++++++++++..+....  +..      .... .....|++||+.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~id~lVn~a   82 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFAN-EVERLDVLFNVA   82 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHH-HCSCCSEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeecccccccccccc-ccccceeEEecc
Confidence            78999999988 5899999999999999999999999999888776654321  111      1111 234679999986


Q ss_pred             CC
Q 010101          436 AI  437 (518)
Q Consensus       436 p~  437 (518)
                      ..
T Consensus        83 g~   84 (245)
T d2ag5a1          83 GF   84 (245)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.34  E-value=0.00016  Score=68.00  Aligned_cols=45  Identities=22%  Similarity=0.357  Sum_probs=41.2

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ||.+||.|+ +|+|++++..|++.|++|.+++|+.++++++++++.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~   47 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR   47 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            688899988 589999999999999999999999999999988774

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.34  E-value=0.00039  Score=59.80  Aligned_cols=74  Identities=16%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc------cc--ccccccccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE------AL--HFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~------~~--~~~~l~~~~~~~~divInat  435 (518)
                      .++|+.|||+|.+|.++++.|...|.  +|.++++++++++..+.++...      ..  ...+. + ...++|+||.|.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-~-~l~daDvvvita   82 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-D-DCRDADLVVICA   82 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-G-GTTTCSEEEECC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-H-HhccceeEEEec
Confidence            36799999999999999999998885  8999999999988887776420      11  11122 2 356799999987


Q ss_pred             CCCCCC
Q 010101          436 AIGMEP  441 (518)
Q Consensus       436 p~g~~~  441 (518)
                      ...-.|
T Consensus        83 g~~~~~   88 (148)
T d1ldna1          83 GANQKP   88 (148)
T ss_dssp             SCCCCT
T ss_pred             cccccc
Confidence            665444

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=0.00017  Score=67.80  Aligned_cols=47  Identities=28%  Similarity=0.507  Sum_probs=42.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      +++||.++|.|+ +|+|++++..|++.|++|.+++|+.++++++++++
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l   49 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL   49 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            578999999988 58999999999999999999999999988776554

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.33  E-value=0.00015  Score=69.00  Aligned_cols=73  Identities=23%  Similarity=0.303  Sum_probs=56.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc----cccc---cccc------CCCCccE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL----HFEY---LHEF------FPEKGMI  430 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~di  430 (518)
                      ++||+++|.|+ +|.|++++..|++.|++|.+++|+.++++++.++++....    ++.+   +...      .....|+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCccc
Confidence            67999999988 6899999999999999999999999999999988875432    1111   1100      1245799


Q ss_pred             EEEcCCC
Q 010101          431 LANASAI  437 (518)
Q Consensus       431 vInatp~  437 (518)
                      +||+...
T Consensus        83 lvnnAG~   89 (276)
T d1bdba_          83 LIPNAGI   89 (276)
T ss_dssp             EECCCCC
T ss_pred             ccccccc
Confidence            9987754

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00018  Score=68.21  Aligned_cols=46  Identities=28%  Similarity=0.516  Sum_probs=43.0

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ++||+++|.|+ +|.|++++..|++.|++|.+++|+.++++++++++
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~   58 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHC   58 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            89999999998 58999999999999999999999999999988765

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.32  E-value=0.00015  Score=68.51  Aligned_cols=49  Identities=18%  Similarity=0.170  Sum_probs=45.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ++++||+++|.|+ +|.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~   53 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ   53 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            5789999999988 589999999999999999999999999999988774

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.31  E-value=0.00018  Score=68.17  Aligned_cols=49  Identities=20%  Similarity=0.381  Sum_probs=45.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG  412 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~  412 (518)
                      .++||.+||.|+ +|.|++++..|++.|++|.+++|+.+++++++++++.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~   52 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS   52 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC
Confidence            478999999987 5899999999999999999999999999999998864

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.30  E-value=0.00018  Score=68.92  Aligned_cols=48  Identities=27%  Similarity=0.458  Sum_probs=43.4

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      ..++||++||.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l   69 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI   69 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence            4689999999986 79999999999999999999999999888777665

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.29  E-value=0.00053  Score=59.76  Aligned_cols=76  Identities=11%  Similarity=0.151  Sum_probs=56.8

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc--------cccccccccCCCCccEEEE
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA--------LHFEYLHEFFPEKGMILAN  433 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~--------~~~~~l~~~~~~~~divIn  433 (518)
                      .+..+|+.|||+|.+|.++++.|...|.  ++.++++++++++..+.++....        ....+.+  ...++|+||.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~--~~~~adiVVi   94 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYS--VTANSKIVVV   94 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGG--GGTTCSEEEE
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchh--hcccccEEEE
Confidence            3557899999999999999999999986  89999999999988887764211        1111222  3467899998


Q ss_pred             cCCCCCCC
Q 010101          434 ASAIGMEP  441 (518)
Q Consensus       434 atp~g~~~  441 (518)
                      |......|
T Consensus        95 tAg~~~~~  102 (160)
T d1i0za1          95 TAGVRQQE  102 (160)
T ss_dssp             CCSCCCCT
T ss_pred             ecCCcccc
Confidence            88655444

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.0011  Score=57.47  Aligned_cols=76  Identities=12%  Similarity=0.183  Sum_probs=57.1

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc--------cccccccccCCCCccEEEEc
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA--------LHFEYLHEFFPEKGMILANA  434 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~--------~~~~~l~~~~~~~~divIna  434 (518)
                      .+..++.|+|+|..|.++++.|...|.  ++.+++++.++++..+.++....        ..-.+.+  ...++|+||.+
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~--~~~~adivvit   94 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN--VSANSKLVIIT   94 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG--GGTTEEEEEEC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh--hhccccEEEEe
Confidence            455689999999999999999999886  89999999999988877774210        1111222  34678999998


Q ss_pred             CCCCCCCC
Q 010101          435 SAIGMEPN  442 (518)
Q Consensus       435 tp~g~~~~  442 (518)
                      ......|.
T Consensus        95 ag~~~~~~  102 (159)
T d2ldxa1          95 AGARMVSG  102 (159)
T ss_dssp             CSCCCCTT
T ss_pred             cccccCCC
Confidence            87665554

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.26  E-value=0.00034  Score=68.09  Aligned_cols=94  Identities=13%  Similarity=0.110  Sum_probs=66.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCccccc-ccccccCCCCccEEEEcCCCCCCCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKS-RGA-RVIIFNRNYERAKALADAVSGEALHF-EYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~-~G~-~v~i~nRt~~ka~~la~~~~~~~~~~-~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .+++.|+|+|..|+.-+.++.. ... +|.|++|+.++++++++++....... .+..+ ...++|+||-||+.. .|  
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~-a~~~aDiV~taT~s~-~P--  200 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAE-EASRCDVLVTTTPSR-KP--  200 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHH-HHTSSSEEEECCCCS-SC--
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhh-hhccccEEEEeccCc-cc--
Confidence            4689999999999999999875 566 99999999999999998875332211 11222 346789999999843 33  


Q ss_pred             CCCCCChhhhcCCCEEEEE-eeCCC
Q 010101          444 DQSPVPKEALKAYELVFDA-VYTPR  467 (518)
Q Consensus       444 ~~~~~~~~~l~~~~~v~Di-~Y~P~  467 (518)
                         .++.++++++..|.=+ .|.|.
T Consensus       201 ---~~~~~~l~~G~hv~~iGs~~p~  222 (320)
T d1omoa_         201 ---VVKAEWVEEGTHINAIGADGPG  222 (320)
T ss_dssp             ---CBCGGGCCTTCEEEECSCCSTT
T ss_pred             ---ccchhhcCCCCeEeecCCcccc
Confidence               2566788887655444 23454

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.26  E-value=0.00034  Score=61.13  Aligned_cols=103  Identities=13%  Similarity=0.050  Sum_probs=66.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      |+++|||.|-+|.+++.+|.+.|.  +|+.++|+++..+... ..+.......+.......++|+||-|+|+.....   
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~---   77 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE---   77 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHH---
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH-HhhcchhhhhhhhhhhccccccccccCCchhhhh---
Confidence            479999999999999999999996  8999999988765543 3332111111111112246899999998642110   


Q ss_pred             CCCC--hhhhcCCCEEEEEeeCCCchHHHHHHHH
Q 010101          446 SPVP--KEALKAYELVFDAVYTPRNTRLLREAAE  477 (518)
Q Consensus       446 ~~~~--~~~l~~~~~v~Di~Y~P~~T~ll~~A~~  477 (518)
                       .+.  ...++++.++.|+...  .++..+..++
T Consensus        78 -vl~~l~~~~~~~~ii~d~~s~--k~~~~~~~~~  108 (171)
T d2g5ca2          78 -IAKKLSYILSEDATVTDQGSV--KGKLVYDLEN  108 (171)
T ss_dssp             -HHHHHHHHSCTTCEEEECCSC--CTHHHHHHHH
T ss_pred             -hhhhhhccccccccccccccc--cHHHHHHHHH
Confidence             011  1235778899999875  3444444443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.26  E-value=0.00021  Score=63.76  Aligned_cols=101  Identities=17%  Similarity=0.135  Sum_probs=69.9

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNS  443 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~  443 (518)
                      .+.|+++.|+|.|.+|+.++..+...|++|+.++|++...         .....+++++ ...++|+|+.++|..  +. 
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~---------~~~~~~~l~e-ll~~sDiv~~~~pl~--~~-  105 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG---------PWRFTNSLEE-ALREARAAVCALPLN--KH-  105 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS---------SSCCBSCSHH-HHTTCSEEEECCCCS--TT-
T ss_pred             cccCceEEEeccccccccceeeeecccccccccccccccc---------ceeeeechhh-hhhccchhhcccccc--cc-
Confidence            4789999999999999999999999999999999985431         1112234444 456799999999874  22 


Q ss_pred             CCCCCChhh---hcCCCEEEEEeeCCC--chHHHHHHHH
Q 010101          444 DQSPVPKEA---LKAYELVFDAVYTPR--NTRLLREAAE  477 (518)
Q Consensus       444 ~~~~~~~~~---l~~~~~v~Di~Y~P~--~T~ll~~A~~  477 (518)
                      ..-.+..+.   ++++.+++.+.=.+-  +..|++.-++
T Consensus       106 t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~  144 (181)
T d1qp8a1         106 TRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKE  144 (181)
T ss_dssp             TTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHH
T ss_pred             cccccccceeeeccccceEEeccccccccchhhhhhccc
Confidence            223466554   467888888753322  3445444444

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.26  E-value=0.00023  Score=66.71  Aligned_cols=72  Identities=32%  Similarity=0.411  Sum_probs=52.6

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccc--ccc---cccc------CCCCccEEE
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALH--FEY---LHEF------FPEKGMILA  432 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~--~~~---l~~~------~~~~~divI  432 (518)
                      |+||++||.|+ +|+|++++..|++.|++|.+++|+.++ +++++.++...+.  +.+   +.+.      .....|++|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~-~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-HHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            67999999987 689999999999999999999999765 4567777654322  111   1100      124579999


Q ss_pred             EcCCC
Q 010101          433 NASAI  437 (518)
Q Consensus       433 natp~  437 (518)
                      |....
T Consensus        82 nnAG~   86 (248)
T d2d1ya1          82 NNAAI   86 (248)
T ss_dssp             ECCCC
T ss_pred             EeCcC
Confidence            97654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.25  E-value=9.2e-05  Score=66.65  Aligned_cols=69  Identities=16%  Similarity=0.175  Sum_probs=50.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCcc---ccc-------ccccccCCCCccEEEEcCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAV-SGEA---LHF-------EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~-~~~~---~~~-------~~l~~~~~~~~divInatp  436 (518)
                      +++.|||+|.+|.|++..|++.|.+|+++.|+++.++++.+.- +...   +.+       .++.+ ...++|+||-|+|
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~-a~~~ad~iiiavP   86 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEK-AYNGAEIILFVIP   86 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHH-HHTTCSCEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhh-ccCCCCEEEEcCc
Confidence            5799999999999999999999999999999999998886542 1111   111       12222 3456788887776


Q ss_pred             C
Q 010101          437 I  437 (518)
Q Consensus       437 ~  437 (518)
                      .
T Consensus        87 s   87 (189)
T d1n1ea2          87 T   87 (189)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00017  Score=67.95  Aligned_cols=49  Identities=27%  Similarity=0.485  Sum_probs=44.7

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      -.++||+++|.|+ +|.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~   56 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ   56 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            4588999999988 589999999999999999999999999999988774

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.25  E-value=0.00011  Score=61.79  Aligned_cols=68  Identities=21%  Similarity=0.191  Sum_probs=51.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-----ccccccccCCCCccEEEEcCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-----HFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-----~~~~l~~~~~~~~divInatp  436 (518)
                      |+++|+|+|..|+.++..|.+.|.+|++++.++++++++.+... ..+     ..+.+.+..+.++|.+|-+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~-~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYAT-HAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCS-EEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCC-cceeeecccchhhhccCCccccEEEEEcC
Confidence            57899999999999999999999999999999999998865432 211     111222224567898887776

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.22  E-value=6e-05  Score=65.55  Aligned_cols=105  Identities=21%  Similarity=0.277  Sum_probs=70.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPV  448 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~  448 (518)
                      |+-+||.|-||.+++..|.+.|. ++++||+.++++++++..+......+.     ..++|++|.+.|.+-  .  -...
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~--~--v~~~   71 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP-TLVWNRTFEKALRHQEEFGSEAVPLER-----VAEARVIFTCLPTTR--E--VYEV   71 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC-EEEECSSTHHHHHHHHHHCCEECCGGG-----GGGCSEEEECCSSHH--H--HHHH
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC-EEEEeCCHHHHHHHHHHcCCccccccc-----ccceeEEEecccchh--h--hhhh
Confidence            58899999999999999998775 558999999999998887654333322     234677776655320  0  0000


Q ss_pred             Ch---hhhcCCCEEEEEeeC-CCch-HHHHHHHHCCCeee
Q 010101          449 PK---EALKAYELVFDAVYT-PRNT-RLLREAAEVGATVV  483 (518)
Q Consensus       449 ~~---~~l~~~~~v~Di~Y~-P~~T-~ll~~A~~~G~~~i  483 (518)
                      ..   ..+.++.+++|+... |..+ .+.+.++++|+.++
T Consensus        72 ~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~l  111 (156)
T d2cvza2          72 AEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYL  111 (156)
T ss_dssp             HHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             hccccccccccccccccccCCHHHHHHHHHHHHHcCCeEE
Confidence            01   124567899999886 4433 44466677887654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.21  E-value=0.00019  Score=68.08  Aligned_cols=47  Identities=28%  Similarity=0.412  Sum_probs=43.4

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      |+||+++|.|+ +|+|++++..|++.|++|.+++|+.++++++++++.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~   50 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIIL   50 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            68999999988 589999999999999999999999999999988774

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.21  E-value=0.0002  Score=68.15  Aligned_cols=47  Identities=30%  Similarity=0.467  Sum_probs=43.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      |+||+++|.|+ +|.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~   49 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL   49 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            57999999988 589999999999999999999999999999887763

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.20  E-value=0.00026  Score=66.72  Aligned_cols=47  Identities=26%  Similarity=0.434  Sum_probs=43.5

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      |+||.++|.|+ +|.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~   50 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR   50 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            67999999988 589999999999999999999999999999988774

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00027  Score=66.49  Aligned_cols=48  Identities=25%  Similarity=0.369  Sum_probs=44.3

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .++||.+||.|+ +|.|+++|..|++.|++|++++|+.++++++++++.
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~   55 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK   55 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            488999999988 589999999999999999999999999999988774

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00029  Score=63.43  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=35.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      ++|.|||+|-||+.+|..++..|++|++++++++..++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHH
Confidence            689999999999999999999999999999998765543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.15  E-value=0.00024  Score=67.01  Aligned_cols=46  Identities=33%  Similarity=0.472  Sum_probs=42.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      |+||.++|.|+ +|.|++++..|++.|++|.+++|+.++++++++++
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l   49 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   49 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            67999999988 58999999999999999999999999999998876

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0003  Score=67.69  Aligned_cols=48  Identities=29%  Similarity=0.508  Sum_probs=44.0

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .|+||.++|.|+ +|.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~   57 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQ   57 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            489999999988 589999999999999999999999999998887764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.12  E-value=7e-05  Score=64.65  Aligned_cols=79  Identities=18%  Similarity=0.161  Sum_probs=53.8

Q ss_pred             CCcEEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          366 AGKIFVLVG-AGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       366 ~~k~vlvlG-aGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      .-+++.||| .|-||++++..|.+.|++|+++||+.+...+..                 ..++|+++.++|+.....  
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~-----------------~~~~~~v~~~~~~~~~~~--   68 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI-----------------LANADVVIVSVPINLTLE--   68 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHH-----------------HTTCSEEEECSCGGGHHH--
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchh-----------------hhhccccccccchhhhee--
Confidence            347999999 899999999999999999999999876543321                 234677777776532110  


Q ss_pred             CCCCC--hhhhcCCCEEEEEeeC
Q 010101          445 QSPVP--KEALKAYELVFDAVYT  465 (518)
Q Consensus       445 ~~~~~--~~~l~~~~~v~Di~Y~  465 (518)
                        .+.  ...++++.+++|+...
T Consensus        69 --v~~~~~~~~~~~~iiiD~~Sv   89 (152)
T d2pv7a2          69 --TIERLKPYLTENMLLADLTSV   89 (152)
T ss_dssp             --HHHHHGGGCCTTSEEEECCSC
T ss_pred             --eeecccccccCCceEEEeccc
Confidence              000  0123566788888654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.12  E-value=0.0002  Score=67.48  Aligned_cols=48  Identities=23%  Similarity=0.376  Sum_probs=42.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      .+++||++||.|+ +|.|++++..|++.|++|.+++|+.++++++++++
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~   53 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV   53 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4688999999988 58999999999999999999999988877766554

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00068  Score=59.31  Aligned_cols=71  Identities=18%  Similarity=0.260  Sum_probs=53.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCccc-ccc--c-------ccccCCCCccEEEEc
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEAL-HFE--Y-------LHEFFPEKGMILANA  434 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~-~~~--~-------l~~~~~~~~divIna  434 (518)
                      .|.+|+|+|+|++|..++..+...|+ +|++++++++|.+ +|+++|.... ...  +       +.......+|++|++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~-~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~  104 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLS-KAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  104 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHH-HHHHhCCcccccccccccccccccccccCCCCceEEEec
Confidence            47899999999999999999999999 8999999999864 7888886532 111  1       111012468999999


Q ss_pred             CCC
Q 010101          435 SAI  437 (518)
Q Consensus       435 tp~  437 (518)
                      ++.
T Consensus       105 ~G~  107 (171)
T d1pl8a2         105 TGA  107 (171)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            863

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.08  E-value=0.0004  Score=65.33  Aligned_cols=46  Identities=26%  Similarity=0.441  Sum_probs=41.8

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~  410 (518)
                      |+||.++|.|+ +|+|++++..|++.|++|.+++|+.++++++++++
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~   48 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV   48 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            57899999988 58999999999999999999999999988887665

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.08  E-value=0.00042  Score=64.97  Aligned_cols=44  Identities=34%  Similarity=0.471  Sum_probs=39.0

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      |.++|.|+ +|.|++++..|++.|++|.+++|+.++++++++++.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~   46 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN   46 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            44688887 589999999999999999999999999999988774

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.08  E-value=0.00039  Score=64.98  Aligned_cols=73  Identities=26%  Similarity=0.317  Sum_probs=52.3

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCccc----cccc---cccc------CCCCcc
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY-ERAKALADAVSGEAL----HFEY---LHEF------FPEKGM  429 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~-~ka~~la~~~~~~~~----~~~~---l~~~------~~~~~d  429 (518)
                      ++||.++|.|+ +|+|++++..|++.|++|.+++|+. +.+++..+..+.+..    ++.+   +...      .....|
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            67999999988 5899999999999999999999975 456666677664432    1111   1100      124579


Q ss_pred             EEEEcCCC
Q 010101          430 ILANASAI  437 (518)
Q Consensus       430 ivInatp~  437 (518)
                      ++||+...
T Consensus        83 ilVnnAG~   90 (247)
T d2ew8a1          83 ILVNNAGI   90 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.07  E-value=0.00076  Score=58.10  Aligned_cols=75  Identities=16%  Similarity=0.114  Sum_probs=55.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCc------c--cccccccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGE------A--LHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~------~--~~~~~l~~~~~~~~divInatp~  437 (518)
                      +.|+.|||+|..|.++++.|...+. ++.+++++.++++..+.++...      .  +...+..+ ...++|+||.|...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~-~~~~advvvitag~   81 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYD-DLAGADVVIVTAGF   81 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGG-GGTTCSEEEECCSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccccc-ccCCCcEEEEeccc
Confidence            3589999999999999998888888 9999999999988887766431      0  11111122 35679999998876


Q ss_pred             CCCCC
Q 010101          438 GMEPN  442 (518)
Q Consensus       438 g~~~~  442 (518)
                      +..|.
T Consensus        82 ~~~~g   86 (150)
T d1t2da1          82 TKAPG   86 (150)
T ss_dssp             SSCTT
T ss_pred             ccCCC
Confidence            65553

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00084  Score=59.34  Aligned_cols=70  Identities=27%  Similarity=0.327  Sum_probs=52.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-ccccc---------ccc-cCCCCccEEEE
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFEY---------LHE-FFPEKGMILAN  433 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~~---------l~~-~~~~~~divIn  433 (518)
                      .|.+|+|+|+|++|..++..+...|+ +|++++++++|. ++++++|... ++..+         +.+ .....+|++|+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~-~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid  106 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE  106 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccc-cccccccceEEEeccccchHHHHHHHHHhhCCCCceEEee
Confidence            58899999999999999999999999 899999999987 5678887642 21111         111 01235899999


Q ss_pred             cCC
Q 010101          434 ASA  436 (518)
Q Consensus       434 atp  436 (518)
                      +++
T Consensus       107 ~vG  109 (182)
T d1vj0a2         107 ATG  109 (182)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            985

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00042  Score=60.61  Aligned_cols=72  Identities=18%  Similarity=0.190  Sum_probs=53.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccc---cccccCCCCccEEEEcCCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFE---YLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~---~l~~~~~~~~divInatp~g  438 (518)
                      .|.+++|+|+|++|..++..++..|++|++++++++|.+ +++++|... +...   +..+.....+|.++++++.+
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~-~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~  102 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRE-DAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL  102 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHH-HHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHH-HhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence            578999999999999999888889999999999988864 577888643 2221   11111345689999987654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00046  Score=64.70  Aligned_cols=46  Identities=33%  Similarity=0.470  Sum_probs=42.3

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .||.++|.|+ +|.|++++..|++.|++|.+++|+.++.+++++++.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~   48 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALH   48 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            5899999988 689999999999999999999999999999888774

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.00  E-value=0.00061  Score=64.11  Aligned_cols=47  Identities=21%  Similarity=0.323  Sum_probs=38.6

Q ss_pred             cCCcEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhc
Q 010101          365 IAGKIFVLVGA-G--GAGRALAFGAKSRGARVIIFNRNY---ERAKALADAVS  411 (518)
Q Consensus       365 l~~k~vlvlGa-G--g~araia~~L~~~G~~v~i~nRt~---~ka~~la~~~~  411 (518)
                      ++||++||.|+ |  |+|+|+|.+|++.|++|++++|+.   ++++++.+..+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~   55 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN   55 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCC
Confidence            67999999997 4  799999999999999999999985   34555555443

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.99  E-value=0.00082  Score=58.56  Aligned_cols=110  Identities=12%  Similarity=0.061  Sum_probs=72.1

Q ss_pred             EEEEEccchhHHH-HHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc--cccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRA-LAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA--LHFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       369 ~vlvlGaGg~ara-ia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~--~~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      |+.|||+|+.|+. .+.++.+.+. ++.++++++++++++++.++...  -+++++-+   .+.|+|+.+||..+...  
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~iD~V~I~tp~~~H~~--   77 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQ---YGVDAVMIHAATDVHST--   77 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGG---GCCSEEEECSCGGGHHH--
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcc---cccceeccccccccccc--
Confidence            6899999999965 5667766655 88899999999999999987532  24444322   35799999998754321  


Q ss_pred             CCCCChhhhcCC-CEEEE--EeeCCC-chHHHHHHHHCCCeeeccH
Q 010101          445 QSPVPKEALKAY-ELVFD--AVYTPR-NTRLLREAAEVGATVVSGV  486 (518)
Q Consensus       445 ~~~~~~~~l~~~-~~v~D--i~Y~P~-~T~ll~~A~~~G~~~i~G~  486 (518)
                         +....+..+ .++++  +..+.. -..+.+.+++.|..+.-|.
T Consensus        78 ---~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~  120 (167)
T d1xeaa1          78 ---LAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGF  120 (167)
T ss_dssp             ---HHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ---ccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEEEEEe
Confidence               222334443 34443  122211 2566777788888776554

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.97  E-value=0.0016  Score=55.43  Aligned_cols=72  Identities=19%  Similarity=0.307  Sum_probs=52.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc-------ccc-cccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE-------ALH-FEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~-------~~~-~~~l~~~~~~~~divInatp~  437 (518)
                      .|+.|||+|.+|.++++.|...|.  ++.++++++++++..+.++..-       .+. -.+.+  ...++|+||.|...
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~--~~~daDvVVitaG~   79 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE--ICRDADMVVITAGP   79 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG--GGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHH--HhhCCcEEEEeccc
Confidence            478999999999999999999886  8999999999988776665421       111 11222  34678999988865


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      .-.|
T Consensus        80 ~~~~   83 (143)
T d1llda1          80 RQKP   83 (143)
T ss_dssp             CCCT
T ss_pred             ccCC
Confidence            4333

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.95  E-value=0.001  Score=58.55  Aligned_cols=71  Identities=23%  Similarity=0.173  Sum_probs=53.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-ccccc------ccc-cCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFEY------LHE-FFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~~------l~~-~~~~~~divInatp  436 (518)
                      +|.+|+|+|+||+|..++..++..|+ +|++++++.+| .++++++|... +...+      +.+ ..-..+|++|+|++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r-~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g  105 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC-VEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGG  105 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHH-HHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhh-HHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccC
Confidence            47899999999999999999999999 89999999988 46778888642 22221      111 01245899999986


Q ss_pred             C
Q 010101          437 I  437 (518)
Q Consensus       437 ~  437 (518)
                      .
T Consensus       106 ~  106 (174)
T d1jqba2         106 G  106 (174)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.95  E-value=0.00059  Score=60.88  Aligned_cols=110  Identities=22%  Similarity=0.250  Sum_probs=73.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.++++.|+|.|..|+.++..+...|++|..++|...+....  ..+.+..++++    .+.++|+|+.++|..  +.
T Consensus        40 ~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~--~~~~~~~~l~e----ll~~sDiv~~~~Plt--~~  111 (184)
T d1ygya1          40 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA--QLGIELLSLDD----LLARADFISVHLPKT--PE  111 (184)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHH--HHTCEECCHHH----HHHHCSEEEECCCCS--TT
T ss_pred             ccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHh--hcCceeccHHH----HHhhCCEEEEcCCCC--ch
Confidence            45789999999999999999999999999999999976554332  22222233333    345689999999874  22


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeCCC-chHHHHHHHHCCCe
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYTPR-NTRLLREAAEVGAT  481 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~~  481 (518)
                       ..-.+..+.   ++++.+++-+.=.+- ...-+.+|-+.|.-
T Consensus       112 -T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i  153 (184)
T d1ygya1         112 -TAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV  153 (184)
T ss_dssp             -TTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSE
T ss_pred             -hhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcE
Confidence             223466654   456777777766554 34444555555543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.94  E-value=0.00052  Score=59.42  Aligned_cols=76  Identities=13%  Similarity=0.147  Sum_probs=55.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCc-------c-cccc-cccccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGE-------A-LHFE-YLHEFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~-------~-~~~~-~l~~~~~~~~divInat  435 (518)
                      +.+|+.|||+|..|.++++.|+..|. ++.+++.++++++..+.++...       . .... +.++ ...++|+||.|.
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEA-ALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHH-HHTTCSEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhh-hhcCCCeEEEec
Confidence            46799999999999999999998887 9999999998888887766421       0 1111 1112 346789999988


Q ss_pred             CCCCCCC
Q 010101          436 AIGMEPN  442 (518)
Q Consensus       436 p~g~~~~  442 (518)
                      ..+-.|.
T Consensus        85 g~~~~~g   91 (154)
T d1pzga1          85 GLTKVPG   91 (154)
T ss_dssp             SCSSCTT
T ss_pred             ccccCCC
Confidence            7665443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.93  E-value=0.0012  Score=58.33  Aligned_cols=71  Identities=25%  Similarity=0.283  Sum_probs=54.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-ccccccc--------ccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFEYLH--------EFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~--------~~~~~~~divInat  435 (518)
                      +|.+|+|+|+||+|..++..++..|+ +|++++++++|. ++|+++|... +...+-.        ......+|++|+++
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl-~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~  107 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF-EKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVI  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECS
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHH-HHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeC
Confidence            57899999999999999999999998 999999999996 5889998753 2222110        01234689999988


Q ss_pred             CC
Q 010101          436 AI  437 (518)
Q Consensus       436 p~  437 (518)
                      +.
T Consensus       108 g~  109 (176)
T d1d1ta2         108 GH  109 (176)
T ss_dssp             CC
T ss_pred             Cc
Confidence            63

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.93  E-value=0.001  Score=56.93  Aligned_cols=68  Identities=15%  Similarity=0.209  Sum_probs=50.8

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc-------c-cccccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE-------A-LHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~-------~-~~~~~l~~~~~~~~divInatp~  437 (518)
                      ||+.|||+|.+|.++++.|...|.  +|.+++++.++++..+.++...       . +...+.+  ...++|+||-|...
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~--~l~~adiVVitaG~   79 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWA--ALADADVVISTLGN   79 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGG--GGTTCSEEEECCSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHH--HhccccEEEEeccc
Confidence            689999999999999999998885  8999999999988877665411       0 1111222  35678999987653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0017  Score=57.52  Aligned_cols=36  Identities=39%  Similarity=0.622  Sum_probs=33.6

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      ..+|+|+|||+|.+|.++|+.|+++|++|+|+.++.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            457999999999999999999999999999999974

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.0016  Score=55.27  Aligned_cols=72  Identities=18%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc------ccccccccccCCCCccEEEEcCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE------ALHFEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~------~~~~~~l~~~~~~~~divInatp~g~~  440 (518)
                      |+.|||+|..|.++++.|+..|.  +|.++++++++++..+.++...      ..-.....+ ...++|+||.|...+..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~-~~~~adivvitag~~~~   80 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYA-DLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGG-GGTTCSEEEECCCCCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHH-HhcCCCEEEEecccccC
Confidence            68899999999999999988775  8999999999988776665321      000111112 35679999998766544


Q ss_pred             C
Q 010101          441 P  441 (518)
Q Consensus       441 ~  441 (518)
                      |
T Consensus        81 ~   81 (140)
T d1a5za1          81 P   81 (140)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0011  Score=57.74  Aligned_cols=71  Identities=23%  Similarity=0.224  Sum_probs=53.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-ccccc--ccccCCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEY--LHEFFPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~--l~~~~~~~~divInatp~  437 (518)
                      .|.+|+|+|+|++|..++..++..|++++++.++.++. +++++++... +...+  ........+|++|++++.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~-~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~  103 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA  103 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHH-HHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec
Confidence            47899999999999999988889999877899998875 6778888653 22211  111134568999999864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.88  E-value=0.0023  Score=50.63  Aligned_cols=42  Identities=21%  Similarity=0.133  Sum_probs=33.5

Q ss_pred             CCcEEEEEccchhHHHH-HHHHHHCCCeEEEEeCCHH-HHHHHH
Q 010101          366 AGKIFVLVGAGGAGRAL-AFGAKSRGARVIIFNRNYE-RAKALA  407 (518)
Q Consensus       366 ~~k~vlvlGaGg~arai-a~~L~~~G~~v~i~nRt~~-ka~~la  407 (518)
                      +.+++.+||-||+|.+. |..|.++|++|+-.++... ..+.|.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~   50 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLA   50 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHH
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHH
Confidence            46899999999999666 7888899999999998643 344443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.86  E-value=0.00085  Score=58.94  Aligned_cols=71  Identities=21%  Similarity=0.227  Sum_probs=51.9

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-cccc--c----ccccCCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFE--Y----LHEFFPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~--~----l~~~~~~~~divInatp~  437 (518)
                      .|.+|+|+|+|++|.+++..++..|+ .|++++++++|. +++++++... +...  +    +.+.....+|++|++++.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~-~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~  106 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS  106 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHH-HHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCc
Confidence            47899999999999999998888999 788899998886 4567787532 2221  1    111112358999999864

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.85  E-value=0.00072  Score=63.87  Aligned_cols=50  Identities=32%  Similarity=0.565  Sum_probs=42.3

Q ss_pred             CcccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHhc
Q 010101          362 TSPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN-YERAKALADAVS  411 (518)
Q Consensus       362 ~~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt-~~ka~~la~~~~  411 (518)
                      ..+++||+++|.|+ +|.|++++..|++.|++|.++.|+ .+.++++++.+.
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~   64 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK   64 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHH
Confidence            35699999999996 689999999999999999998775 667777776653

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.85  E-value=0.0019  Score=56.13  Aligned_cols=71  Identities=21%  Similarity=0.293  Sum_probs=52.7

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccc-----------cccccCCCCccEEEE
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFE-----------YLHEFFPEKGMILAN  433 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~-----------~l~~~~~~~~divIn  433 (518)
                      .|.+|+|+|+|++|..++..++..|++|++++++++|. +++++++... ..++           .+.+.....+|++|+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~-~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid  104 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRL-EVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  104 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHH-HHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence            47899999999999999999999999999999999995 6667777532 1111           111112345899999


Q ss_pred             cCCC
Q 010101          434 ASAI  437 (518)
Q Consensus       434 atp~  437 (518)
                      +++.
T Consensus       105 ~~g~  108 (170)
T d1e3ja2         105 CSGN  108 (170)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            9853

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.82  E-value=0.0007  Score=66.13  Aligned_cols=96  Identities=13%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             CcEEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCHHHHHHHHHHhcCc-cc---ccccccccCCCCccEEEEcCCCC-C
Q 010101          367 GKIFVLVGAGGAGRALAFGAK-SRGA-RVIIFNRNYERAKALADAVSGE-AL---HFEYLHEFFPEKGMILANASAIG-M  439 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~-~~G~-~v~i~nRt~~ka~~la~~~~~~-~~---~~~~l~~~~~~~~divInatp~g-~  439 (518)
                      .+++.|||+|..|+.-+.++. -.+. +|+|++|++++++++++++... .+   ..+++++ ...++|+|+-+|+.. .
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~e-av~~ADIi~t~Tas~s~  206 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAE-AVKGVDIITTVTADKAY  206 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHH-HHTTCSEEEECCCCSSE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHH-HHhcCCceeeccccCCC
Confidence            478999999999999888875 5678 9999999999999999988532 12   2233444 467799999888632 1


Q ss_pred             CCCCCCCCCChhhhcCCCEEEEE-eeCCCc
Q 010101          440 EPNSDQSPVPKEALKAYELVFDA-VYTPRN  468 (518)
Q Consensus       440 ~~~~~~~~~~~~~l~~~~~v~Di-~Y~P~~  468 (518)
                      .|     .+..++++++..+.=+ .|.|..
T Consensus       207 ~P-----v~~~~~l~pG~hI~aiGs~~p~~  231 (340)
T d1x7da_         207 AT-----IITPDMLEPGMHLNAVGGDCPGK  231 (340)
T ss_dssp             EE-----EECGGGCCTTCEEEECSCCBTTB
T ss_pred             Cc-----ccchhhcCCCCEEeecccchhhh
Confidence            12     2566777776544332 234543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.81  E-value=0.00054  Score=64.19  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=42.1

Q ss_pred             ccCCcEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHhcCc
Q 010101          364 PIAGKIFVLVGA-G--GAGRALAFGAKSRGARVIIFNRNYERA-KALADAVSGE  413 (518)
Q Consensus       364 ~l~~k~vlvlGa-G--g~araia~~L~~~G~~v~i~nRt~~ka-~~la~~~~~~  413 (518)
                      -++||++||.|+ |  |+|++++..|++.|++|.+.+|+.++. +++++.++..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~   56 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAK   56 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCc
Confidence            368999999996 4  699999999999999999999998775 6677777643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.79  E-value=0.0057  Score=47.49  Aligned_cols=35  Identities=29%  Similarity=0.263  Sum_probs=29.4

Q ss_pred             cEEEEEccchhHHHH-HHHHHHCCCeEEEEeCCHHH
Q 010101          368 KIFVLVGAGGAGRAL-AFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       368 k~vlvlGaGg~arai-a~~L~~~G~~v~i~nRt~~k  402 (518)
                      .|+-++|-||+|.+. |..|.++|++|+-.++....
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~   37 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETE   37 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCCh
Confidence            478999999999855 67778999999999998643

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.79  E-value=0.002  Score=54.73  Aligned_cols=71  Identities=15%  Similarity=0.158  Sum_probs=51.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC------c-c-ccc-ccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSG------E-A-LHF-EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~------~-~-~~~-~~l~~~~~~~~divInatp~  437 (518)
                      |+.|||+|..|.++++.|+..|.  ++.+++++.++++..+.++..      . . +.. .+.+  ...++|+||.|...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~--~~~~adiVvitag~   79 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS--LLKGSEIIVVTAGL   79 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGG--GGTTCSEEEECCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHH--HhccccEEEEeccc
Confidence            68899999999999999998775  899999999998776655531      1 1 111 1222  35678999988766


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      +..|
T Consensus        80 ~~~~   83 (142)
T d1ojua1          80 ARKP   83 (142)
T ss_dssp             CCCS
T ss_pred             cCCC
Confidence            5444

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.79  E-value=0.00047  Score=61.16  Aligned_cols=68  Identities=22%  Similarity=0.323  Sum_probs=47.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHhcCcc----c------ccccccccCCCCccEEEEcCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE--RAKALADAVSGEA----L------HFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~--ka~~la~~~~~~~----~------~~~~l~~~~~~~~divInatp  436 (518)
                      +|.|||+|.+|.|+|..|++.|.+|++++|..+  ..+.+.+.-....    .      ...++.+ ...++|+||.|+|
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEK-CLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHH-HHTTCSEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHH-HHhccchhhcccc
Confidence            689999999999999999999999999999544  3444432211000    0      1123333 3567899999998


Q ss_pred             C
Q 010101          437 I  437 (518)
Q Consensus       437 ~  437 (518)
                      .
T Consensus        81 s   81 (180)
T d1txga2          81 T   81 (180)
T ss_dssp             G
T ss_pred             h
Confidence            5

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.76  E-value=0.00079  Score=57.78  Aligned_cols=87  Identities=16%  Similarity=0.085  Sum_probs=56.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL-ADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSP  447 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~l-a~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~  447 (518)
                      |+.|||.|-||++++..|.+.|++|++++|+.++...+ ++..+.. .+.++    ...++|+||-++|....     ..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~~~~e----~~~~~diIi~~v~~~~~-----~~   71 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT-ETSEE----DVYSCPVVISAVTPGVA-----LG   71 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE-ECCHH----HHHTSSEEEECSCGGGH-----HH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhccccc-ccHHH----HHhhcCeEEEEecCchH-----HH
Confidence            68899999999999999999999999999887665444 3443321 12222    23468999998874311     00


Q ss_pred             CChh-hhcCCCEEEEEeeC
Q 010101          448 VPKE-ALKAYELVFDAVYT  465 (518)
Q Consensus       448 ~~~~-~l~~~~~v~Di~Y~  465 (518)
                      +-.. ....+.+++|+...
T Consensus        72 ~~~~~~~~~~~~~id~st~   90 (152)
T d1i36a2          72 AARRAGRHVRGIYVDINNI   90 (152)
T ss_dssp             HHHHHHTTCCSEEEECSCC
T ss_pred             HHHhhcccCCceeeccCcC
Confidence            1011 11234678888665

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.76  E-value=0.00085  Score=63.11  Aligned_cols=48  Identities=23%  Similarity=0.519  Sum_probs=41.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY-ERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~-~ka~~la~~~~  411 (518)
                      +++||.++|.|+ +|.|++++..|++.|++|.+++|+. ++++++++++.
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~   53 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIK   53 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHH
Confidence            588999999987 6899999999999999999999985 46777776653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.75  E-value=0.0018  Score=56.94  Aligned_cols=71  Identities=24%  Similarity=0.280  Sum_probs=54.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-ccccccc--------ccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFEYLH--------EFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~--------~~~~~~~divInat  435 (518)
                      .|.+|+|+|+||.|..++..+...|+ +|++++++++|. ++++++|... +.....+        ......+|++|+|+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~  106 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA  106 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEec
Confidence            57899999999999999999999999 899999999884 7889998643 2221110        11135689999999


Q ss_pred             CC
Q 010101          436 AI  437 (518)
Q Consensus       436 p~  437 (518)
                      ..
T Consensus       107 G~  108 (174)
T d1e3ia2         107 GT  108 (174)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.75  E-value=0.0011  Score=56.51  Aligned_cols=73  Identities=15%  Similarity=0.179  Sum_probs=48.5

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcc-----cc-cccccccCCCCccEEEEcCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEA-----LH-FEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~-----~~-~~~l~~~~~~~~divInatp~g~  439 (518)
                      +|+.|||+|.+|.++++.|...|.  +|.+++++.++++..+.++....     .. .....+ ...++|+||.|...+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~-~~~~adivvitag~~~   80 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYS-DVKDCDVIVVTAGANR   80 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGG-GGTTCSEEEECCCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHH-HhCCCceEEEeccccc
Confidence            478999999999999999999886  89999999999888777775311     00 111112 3567899998876554


Q ss_pred             CC
Q 010101          440 EP  441 (518)
Q Consensus       440 ~~  441 (518)
                      .|
T Consensus        81 ~~   82 (142)
T d1y6ja1          81 KP   82 (142)
T ss_dssp             --
T ss_pred             Cc
Confidence            44

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.74  E-value=0.00087  Score=59.01  Aligned_cols=111  Identities=19%  Similarity=0.288  Sum_probs=68.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc--cc------ccccccCCCCccEEEEcCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL--HF------EYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~--~~------~~l~~~~~~~~divInatp~g~~  440 (518)
                      ++-|||.|-||.+++..|.+.|++|+++||++++++++.+.......  ..      +++.. .....+.++...+.+..
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAA-SLKKPRKALILVQAGAA   81 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHH-HBCSSCEEEECCCCSHH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHH-hcccceEEEEeecCcch
Confidence            58899999999999999999999999999999999999887653211  11      11111 12334444444432210


Q ss_pred             CCCCCCCCC--hhhhcCCCEEEEEeeCCC-c-hHHHHHHHHCCCeee
Q 010101          441 PNSDQSPVP--KEALKAYELVFDAVYTPR-N-TRLLREAAEVGATVV  483 (518)
Q Consensus       441 ~~~~~~~~~--~~~l~~~~~v~Di~Y~P~-~-T~ll~~A~~~G~~~i  483 (518)
                        ... .+.  ...+.++.+++|...... . ..+.+..+++|+.++
T Consensus        82 --~~~-~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~l  125 (178)
T d1pgja2          82 --TDS-TIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFL  125 (178)
T ss_dssp             --HHH-HHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             --hhh-hhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEe
Confidence              000 000  123567788889887633 2 344555567787543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.73  E-value=0.00093  Score=59.57  Aligned_cols=39  Identities=23%  Similarity=0.357  Sum_probs=35.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      ++|.|||+|-||+.+|..++..|++|++++++++..++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhh
Confidence            679999999999999999999999999999998765543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.73  E-value=0.00082  Score=64.69  Aligned_cols=75  Identities=23%  Similarity=0.325  Sum_probs=53.8

Q ss_pred             cccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeC---------CHHHHHHHHHHhcCcc----cc---cccc-----
Q 010101          363 SPIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNR---------NYERAKALADAVSGEA----LH---FEYL-----  420 (518)
Q Consensus       363 ~~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nR---------t~~ka~~la~~~~~~~----~~---~~~l-----  420 (518)
                      ..++||.++|.|++ |.|++++..|++.|++|.+.+|         +.+++++++++++...    ..   .++.     
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~   82 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK   82 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHH
Confidence            45789999999985 8999999999999999999854         5667888887775321    11   1111     


Q ss_pred             --cccCCCCccEEEEcCCCC
Q 010101          421 --HEFFPEKGMILANASAIG  438 (518)
Q Consensus       421 --~~~~~~~~divInatp~g  438 (518)
                        .+ .....|++||.....
T Consensus        83 ~~~~-~~G~iDiLVnNAGi~  101 (302)
T d1gz6a_          83 TALD-TFGRIDVVVNNAGIL  101 (302)
T ss_dssp             HHHH-HTSCCCEEEECCCCC
T ss_pred             HHHH-HcCCCCEEEECCccC
Confidence              11 234679999987543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.72  E-value=0.00085  Score=62.89  Aligned_cols=49  Identities=31%  Similarity=0.541  Sum_probs=41.1

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHhc
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIF-NRNYERAKALADAVS  411 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~-nRt~~ka~~la~~~~  411 (518)
                      .+|+||.|||.|+ +|.|++++..|++.|++|++. +|+.+.++++++++.
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~   52 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELK   52 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHH
Confidence            3688999999988 589999999999999998885 677777777776663

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.71  E-value=0.00092  Score=62.73  Aligned_cols=46  Identities=20%  Similarity=0.400  Sum_probs=39.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHh
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN-YERAKALADAV  410 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt-~~ka~~la~~~  410 (518)
                      ++||.++|.|+ +|+|++++..|++.|++|.+++|+ .++++++++++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~   49 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGL   49 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHH
Confidence            56899999988 589999999999999999999996 56677766554

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.0054  Score=53.64  Aligned_cols=129  Identities=19%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             cccCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccccccc--------ccccCCCCccEEEE
Q 010101          363 SPIAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEY--------LHEFFPEKGMILAN  433 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~--------l~~~~~~~~divIn  433 (518)
                      .+++||+++|+|-+. .||.++.-|.+.|+.|++++.+........+..........+        +.+ ....+|++|.
T Consensus        25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~-~~~~aDIvIs  103 (171)
T d1edza1          25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKK-CSLDSDVVIT  103 (171)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHH-HHHHCSEEEE
T ss_pred             CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhh-ccccCCEEEE
Confidence            478999999999886 799999999999999999986522100000000000000011        111 2235899998


Q ss_pred             cCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHH-CCCee-ec-c--HHHHHHHHHHHHHHhc
Q 010101          434 ASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAE-VGATV-VS-G--VEMFIRQALGQFRLFT  501 (518)
Q Consensus       434 atp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~-~G~~~-i~-G--~~ml~~Qa~~qf~lw~  501 (518)
                      +++..   +   ..+..++++++.+++|+-.+...-   +.+++ .++.+ ++ |  .-||+...+..++.|-
T Consensus       104 avG~p---~---~~i~~d~ik~GavvIDvGi~~~~~---~~v~~~a~~iTPVPGGVTvamLl~N~v~a~~~~~  167 (171)
T d1edza1         104 GVPSE---N---YKFPTEYIKEGAVCINFACTKNFS---DDVKEKASLYVPMTGKVTIAMLLRNMLRLVRNVE  167 (171)
T ss_dssp             CCCCT---T---CCBCTTTSCTTEEEEECSSSCCBC---GGGGTTEEEEESCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCC---c---cccChhhcccCceEeecccccccc---cchhheeeEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88642   1   126678889999999996553321   12222 23211 23 3  4588888888887775

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.66  E-value=0.0016  Score=58.34  Aligned_cols=96  Identities=14%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|+|.|.+|+.++..|...|++|..++|.......  ...+..  ...++++ ...++|+|+.++|..-  .
T Consensus        45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~--~~~~~~--~~~~l~~-ll~~sD~i~~~~plt~--~  117 (193)
T d1mx3a1          45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE--RALGLQ--RVSTLQD-LLFHSDCVTLHCGLNE--H  117 (193)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH--HHHTCE--ECSSHHH-HHHHCSEEEECCCCCT--T
T ss_pred             eeeeCceEEEeccccccccceeeeeccccceeeccCcccccch--hhhccc--cccchhh-ccccCCEEEEeecccc--c
Confidence            5688999999999999999999999999999999997554221  222221  1222333 2345799998888642  2


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeCC
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYTP  466 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~P  466 (518)
                       ..-.+..+.   ++++.+++.+.=.+
T Consensus       118 -T~~li~~~~l~~mk~~a~lIN~sRG~  143 (193)
T d1mx3a1         118 -NHHLINDFTVKQMRQGAFLVNTARGG  143 (193)
T ss_dssp             -CTTSBSHHHHTTSCTTEEEEECSCTT
T ss_pred             -chhhhhHHHHhccCCCCeEEecCCce
Confidence             222355543   45666666665444

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.63  E-value=0.00068  Score=61.13  Aligned_cols=107  Identities=12%  Similarity=0.173  Sum_probs=69.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|+|.|.+|+.++..|...|++|..+++.......   .-+   ....++.+ .+.++|+|+.+.|..-  .
T Consensus        39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~---~~~---~~~~~l~~-~l~~sDii~~~~plt~--~  109 (197)
T d1j4aa1          39 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE---KKG---YYVDSLDD-LYKQADVISLHVPDVP--A  109 (197)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH---HTT---CBCSCHHH-HHHHCSEEEECSCCCG--G
T ss_pred             ccccCCeEEEecccccchhHHHhHhhhcccccccCcccccccc---cce---eeeccccc-cccccccccccCCccc--c
Confidence            4578999999999999999999999999999999987543211   111   12233333 3456899999998642  1


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeCCC--chHHHHHHHHCCC
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYTPR--NTRLLREAAEVGA  480 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~P~--~T~ll~~A~~~G~  480 (518)
                       ..-.+..+.   ++++.+++-+.=.+-  +..| .+|-+.|.
T Consensus       110 -T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL-~~aL~~~~  150 (197)
T d1j4aa1         110 -NVHMINDESIAKMKQDVVIVNVSRGPLVDTDAV-IRGLDSGK  150 (197)
T ss_dssp             -GTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHH-HHHHHHTS
T ss_pred             -ccccccHHHHhhhCCccEEEecCchhhhhhHHH-HHHHhccc
Confidence             222456554   456777776655443  3334 34444443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.61  E-value=0.0029  Score=55.52  Aligned_cols=72  Identities=19%  Similarity=0.212  Sum_probs=54.0

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-ccccccc--------ccCCCCccEEEEc
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFEYLH--------EFFPEKGMILANA  434 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~--------~~~~~~~divIna  434 (518)
                      -.|.+|+|+|+||.|..++..++..|+ +|++++++.+|. +++++++... +...+.+        ......+|++|++
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH-HHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            357899999999999999999999998 899999998886 6778888653 2221110        0122468999998


Q ss_pred             CCC
Q 010101          435 SAI  437 (518)
Q Consensus       435 tp~  437 (518)
                      +..
T Consensus       105 ~g~  107 (174)
T d1p0fa2         105 AGR  107 (174)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            853

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.59  E-value=0.0032  Score=53.36  Aligned_cols=72  Identities=13%  Similarity=0.143  Sum_probs=50.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCc------cccc--ccccccCCCCccEEEEcCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGE------ALHF--EYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~------~~~~--~~l~~~~~~~~divInatp~g  438 (518)
                      |+.|+|+|.+|.++++.|+..|.  +|.++++++++++..+..+...      ...+  .+..+ ...++|++|.|....
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~-~~~dadvvvitag~~   80 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYA-DTANSDIVIITAGLP   80 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGG-GGTTCSEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHH-HhcCCeEEEEEEecC
Confidence            68999999999999999999885  8999999998877765544321      1111  12122 357799999887544


Q ss_pred             CCC
Q 010101          439 MEP  441 (518)
Q Consensus       439 ~~~  441 (518)
                      -.|
T Consensus        81 ~~~   83 (142)
T d1guza1          81 RKP   83 (142)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            333

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00028  Score=63.61  Aligned_cols=69  Identities=14%  Similarity=0.081  Sum_probs=48.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc--ccc---ccccccCCCCccEEEEcCCC
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA--LHF---EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~--~~~---~~l~~~~~~~~divInatp~  437 (518)
                      .|||+|+|| |..|++++..|.+.|++|+++.|++++....... +.+.  .++   +++.+ ...++|+||++.+.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~-~~~~~~gD~~d~~~l~~-al~~~d~vi~~~g~   77 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR-PAHVVVGDVLQAADVDK-TVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCC-CSEEEESCTTSHHHHHH-HHTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccc-ccccccccccchhhHHH-HhcCCCEEEEEecc
Confidence            478999996 8899999999999999999999998885432110 1111  122   22333 35678999998754

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=96.54  E-value=0.15  Score=46.60  Aligned_cols=132  Identities=21%  Similarity=0.210  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEe-C----------CHHHHHH-
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFN-R----------NYERAKA-  405 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~n-R----------t~~ka~~-  405 (518)
                      +.|...+++..++..+         .+++|++|+|-|.|-+|..++..|.+.|++|+-++ .          +.+...+ 
T Consensus        11 g~Gv~~~~~~~~~~~~---------~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~   81 (242)
T d1v9la1          11 GFGVAVATREMAKKLW---------GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKN   81 (242)
T ss_dssp             HHHHHHHHHHHHHHHH---------SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHT
T ss_pred             hHHHHHHHHHHHHHcC---------CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHH
Confidence            5677777776665433         46899999999999999999999999999765433 2          1222211 


Q ss_pred             ----------HHHHh-cCcccc-cccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHH
Q 010101          406 ----------LADAV-SGEALH-FEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLR  473 (518)
Q Consensus       406 ----------la~~~-~~~~~~-~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~  473 (518)
                                ..... +...+. -+++   ....+||++-|..-+.   ++....  ..+ ...+|+...-+|....-.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~DIliPcA~~~~---I~~~~a--~~i-~ak~IvegAN~p~t~~a~~  152 (242)
T d1v9la1          82 KGLTGPALVELFTTKDNAEFVKNPDAI---FKLDVDIFVPAAIENV---IRGDNA--GLV-KARLVVEGANGPTTPEAER  152 (242)
T ss_dssp             TTSCHHHHHHHHHHTSCCCCCSSTTGG---GGCCCSEEEECSCSSC---BCTTTT--TTC-CCSEEECCSSSCBCHHHHH
T ss_pred             hhcchhhHHHhhhhccCceEeeCcchh---ccccccEEeecchhcc---ccHHHH--Hhc-ccCEEEecCCCCCChhHHH
Confidence                      11111 111111 1112   1246899998764432   122111  123 3468888888886333334


Q ss_pred             HHHHCCCeeeccHH
Q 010101          474 EAAEVGATVVSGVE  487 (518)
Q Consensus       474 ~A~~~G~~~i~G~~  487 (518)
                      .-+++|+.+++..-
T Consensus       153 ~L~~rgI~~~PD~~  166 (242)
T d1v9la1         153 ILYERGVVVVPDIL  166 (242)
T ss_dssp             HHHTTTCEEECHHH
T ss_pred             HHHhCCeEEeCchh
Confidence            44678999888754

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.0015  Score=61.07  Aligned_cols=48  Identities=27%  Similarity=0.385  Sum_probs=42.6

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHhc
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKS---RGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~---~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      .++||.++|.|+ +|.|++++..|++   .|++|.+++|+.++++++++++.
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~   54 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG   54 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHH
Confidence            478999999988 5899999999986   68899999999999999988774

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.50  E-value=0.0026  Score=54.03  Aligned_cols=72  Identities=13%  Similarity=0.134  Sum_probs=51.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCc------cccc---ccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGE------ALHF---EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~------~~~~---~~l~~~~~~~~divInatp~  437 (518)
                      +|+.|||+|..|.++++.|+..+. ++.+++++.++++..+.++...      ...+   .+.+  ...++|++|-|...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~--~~~~advvvitag~   79 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA--DTANSDVIVVTSGA   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG--GGTTCSEEEECCSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH--HhcCCCEEEEeeec
Confidence            589999999999999999998887 9999999999888877666421      1111   1222  34678999988765


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      ...|
T Consensus        80 ~~~~   83 (142)
T d1uxja1          80 PRKP   83 (142)
T ss_dssp             C---
T ss_pred             cCCc
Confidence            4444

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.50  E-value=0.0041  Score=54.25  Aligned_cols=71  Identities=23%  Similarity=0.274  Sum_probs=53.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-cccccc--------cccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFEYL--------HEFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~~l--------~~~~~~~~divInat  435 (518)
                      +|.+|+|+|+||.+..++..++..|+ +|.+++++++|. +++.+++... +...+-        .......+|++|+++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~-~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~  106 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF-AKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVI  106 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHH-HHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecC
Confidence            57899999999999999999999998 999999999996 4667777542 222111        111234689999998


Q ss_pred             CC
Q 010101          436 AI  437 (518)
Q Consensus       436 p~  437 (518)
                      +.
T Consensus       107 G~  108 (176)
T d2jhfa2         107 GR  108 (176)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.48  E-value=0.0035  Score=55.97  Aligned_cols=96  Identities=15%  Similarity=0.136  Sum_probs=62.7

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|+|.|.+|+.++..+...|++|..+++.................+++   + ...++|+|+.+.|..  +.
T Consensus        43 ~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~---~-ll~~sD~v~l~~plt--~~  116 (191)
T d1gdha1          43 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLD---S-LLSVSQFFSLNAPST--PE  116 (191)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHH---H-HHHHCSEEEECCCCC--TT
T ss_pred             ceecccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHH---H-HHhhCCeEEecCCCC--ch
Confidence            45779999999999999999999999999999999865543332222111122333   2 345689999988864  22


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeC
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYT  465 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~  465 (518)
                       ..-.+..+.   ++++.+++-+.=.
T Consensus       117 -T~~li~~~~l~~mk~~a~lIN~sRG  141 (191)
T d1gdha1         117 -TRYFFNKATIKSLPQGAIVVNTARG  141 (191)
T ss_dssp             -TTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred             -HhheecHHHhhCcCCccEEEecCCc
Confidence             223355543   3566666655443

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.00063  Score=59.14  Aligned_cols=116  Identities=16%  Similarity=0.059  Sum_probs=76.3

Q ss_pred             EEEEEccchhHHH-HHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCccc-ccccccccCCCCccEEEEcCCCCCCCCCC
Q 010101          369 IFVLVGAGGAGRA-LAFGAKSR-GAR-VIIFNRNYERAKALADAVSGEAL-HFEYLHEFFPEKGMILANASAIGMEPNSD  444 (518)
Q Consensus       369 ~vlvlGaGg~ara-ia~~L~~~-G~~-v~i~nRt~~ka~~la~~~~~~~~-~~~~l~~~~~~~~divInatp~g~~~~~~  444 (518)
                      ++.|||+|.+|+- .+.++... +++ +.|++|+.++++++++.++.... .++++    ..+.|+|+.+||..+...  
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l----~~~~D~V~I~tp~~~h~~--   76 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL----AASCDAVFVHSSTASHFD--   76 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHH----HTTCSEEEECSCTTHHHH--
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhh----hhhcccccccccchhccc--
Confidence            6899999999965 56667665 554 67999999999999999876532 22333    246799999998764321  


Q ss_pred             CCCCChhhhcCC-CEEEE--EeeCCC-chHHHHHHHHCCCeeeccHHHHHHHH
Q 010101          445 QSPVPKEALKAY-ELVFD--AVYTPR-NTRLLREAAEVGATVVSGVEMFIRQA  493 (518)
Q Consensus       445 ~~~~~~~~l~~~-~~v~D--i~Y~P~-~T~ll~~A~~~G~~~i~G~~ml~~Qa  493 (518)
                         +....+..+ .+++|  +..++. -..+++.|++.|..+.-|.....+++
T Consensus        77 ---~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~~~  126 (164)
T d1tlta1          77 ---VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFFVG  126 (164)
T ss_dssp             ---HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGHHH
T ss_pred             ---cccccccccceeeccccccCCHHHHHHHHHHHHHcCCcEEEEeccccCHH
Confidence               222334444 44444  333322 25677888889988777765554443

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0027  Score=56.56  Aligned_cols=93  Identities=18%  Similarity=0.245  Sum_probs=62.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.++++.|+|.|.+|+.++..|...|++|+.++|+.....       .....++++++ ....+|+|+.+.|..  +.
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-------~~~~~~~~l~e-ll~~sDii~i~~plt--~~  109 (188)
T d1sc6a1          40 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL-------GNATQVQHLSD-LLNMSDVVSLHVPEN--PS  109 (188)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC-------TTCEECSCHHH-HHHHCSEEEECCCSS--TT
T ss_pred             ccccceEEEEeecccchhhhhhhcccccceEeeccccccchh-------hhhhhhhhHHH-HHhhccceeecccCC--cc
Confidence            457899999999999999999999999999999998754321       01112233333 345679998888764  21


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeCC
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYTP  466 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~P  466 (518)
                       ....+..+.   ++++.+++-+.=.+
T Consensus       110 -T~~li~~~~l~~mk~~a~lIN~aRG~  135 (188)
T d1sc6a1         110 -TKNMMGAKEISLMKPGSLLINASRGT  135 (188)
T ss_dssp             -TTTCBCHHHHHHSCTTEEEEECSCSS
T ss_pred             -hhhhccHHHHhhCCCCCEEEEcCcHH
Confidence             223456554   35667776665544

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.42  E-value=0.0017  Score=58.43  Aligned_cols=108  Identities=13%  Similarity=0.167  Sum_probs=70.3

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.|+++.|+|.|..|+.++..|...|++|+.++|...+...       ....+.++++ ....+|+|+.++|..-  .
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-------~~~~~~~l~~-l~~~~D~v~~~~plt~--~  110 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH-------PDFDYVSLED-LFKQSDVIDLHVPGIE--Q  110 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC-------TTCEECCHHH-HHHHCSEEEECCCCCG--G
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCccchhhh-------cchhHHHHHH-HHHhcccceeeecccc--c
Confidence            4678999999999999999999999999999999997553210       1112223333 3356899999888642  2


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeCCC-chHHHHHHHHCCCe
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYTPR-NTRLLREAAEVGAT  481 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~~  481 (518)
                       ..-.+..+.   ++++.+++-+.=.+. .+.-+-+|-+.|..
T Consensus       111 -T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i  152 (199)
T d1dxya1         111 -NTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL  152 (199)
T ss_dssp             -GTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred             -ccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCc
Confidence             223466554   466777766654433 34444555555543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.42  E-value=0.0045  Score=53.80  Aligned_cols=70  Identities=23%  Similarity=0.296  Sum_probs=52.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-ccccc----c----cccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFEY----L----HEFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~~----l----~~~~~~~~divInat  435 (518)
                      +|.+|+|.|+||.|..++..++..|+ .|++++++++|. ++++++|... +...+    .    .......+|++|+++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~-~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~  106 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECI  106 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHH-HHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecC
Confidence            57899999999999999999999998 888888888884 6788898643 22211    1    111234689999987


Q ss_pred             C
Q 010101          436 A  436 (518)
Q Consensus       436 p  436 (518)
                      .
T Consensus       107 G  107 (176)
T d2fzwa2         107 G  107 (176)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.41  E-value=0.0021  Score=59.46  Aligned_cols=42  Identities=19%  Similarity=0.360  Sum_probs=37.5

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCe-------EEEEeCCHHHHHHHHHHhc
Q 010101          370 FVLVGA-GGAGRALAFGAKSRGAR-------VIIFNRNYERAKALADAVS  411 (518)
Q Consensus       370 vlvlGa-Gg~araia~~L~~~G~~-------v~i~nRt~~ka~~la~~~~  411 (518)
                      |||.|+ +|.|++++..|++.|++       |.+++|+.++++++++++.
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~   53 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECR   53 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHH
Confidence            677787 58999999999999986       9999999999999988874

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.39  E-value=0.0022  Score=59.69  Aligned_cols=41  Identities=24%  Similarity=0.274  Sum_probs=36.1

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 010101          363 SPIAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERA  403 (518)
Q Consensus       363 ~~l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt~~ka  403 (518)
                      .+++||+++|.||+   |.|++++..|++.|++|.+..|+.+..
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~   47 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLR   47 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence            46899999999984   799999999999999999999986543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.34  E-value=0.0054  Score=54.75  Aligned_cols=70  Identities=27%  Similarity=0.191  Sum_probs=52.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCccccc---cc----ccc-cCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEALHF---EY----LHE-FFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~~~---~~----l~~-~~~~~~divInatp  436 (518)
                      .|.+|+|+|+|+.|..++..++..|+ +|++++++++|. ++|++++......   ++    +.+ .....+|++|+++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG  103 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  103 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhh-HhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence            47899999999999998888888898 999999999886 5778887643211   11    111 02345899999885

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.31  E-value=0.0031  Score=57.52  Aligned_cols=112  Identities=17%  Similarity=0.193  Sum_probs=70.2

Q ss_pred             cEEEEEccchhHHH-HHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCcc------cccccccccCCCCccEEEEcCCCC
Q 010101          368 KIFVLVGAGGAGRA-LAFGAKSR-GAR-VIIFNRNYERAKALADAVSGEA------LHFEYLHEFFPEKGMILANASAIG  438 (518)
Q Consensus       368 k~vlvlGaGg~ara-ia~~L~~~-G~~-v~i~nRt~~ka~~la~~~~~~~------~~~~~l~~~~~~~~divInatp~g  438 (518)
                      -++.|||+|.+|+. .+.++... +++ +.|++|++++++++++.++...      -+++++-+  ..+.|+|+-+||..
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~--~~~iD~V~I~tp~~  111 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAK--DPKIDAVYIILPNS  111 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGG--CTTCCEEEECSCGG
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcc--cccceeeeeccchh
Confidence            48999999999975 45555554 455 5599999999999999987532      23344321  24679999999865


Q ss_pred             CCCCCCCCCCChhhhcCCC-EEEEEeeCCC------chHHHHHHHHCCCeeeccHHHH
Q 010101          439 MEPNSDQSPVPKEALKAYE-LVFDAVYTPR------NTRLLREAAEVGATVVSGVEMF  489 (518)
Q Consensus       439 ~~~~~~~~~~~~~~l~~~~-~v~Di~Y~P~------~T~ll~~A~~~G~~~i~G~~ml  489 (518)
                      ....     +....+..+. ++++   +|.      -..+++.|++.|..+.-|..+-
T Consensus       112 ~H~~-----~~~~al~~gk~v~~E---KPla~~~~e~~~l~~~a~~~~~~~~v~~~~r  161 (221)
T d1h6da1         112 LHAE-----FAIRAFKAGKHVMCE---KPMATSVADCQRMIDAAKAANKKLMIGYRCH  161 (221)
T ss_dssp             GHHH-----HHHHHHHTTCEEEEC---SSCCSSHHHHHHHHHHHHHHTCCEEECCGGG
T ss_pred             hhhh-----HHHHhhhcchhhhcC---CCccCCHHHHHHHHHHHHhcCCcEEEeeccc
Confidence            4321     2223344433 3322   333      2455666777777776565543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.28  E-value=0.0016  Score=60.13  Aligned_cols=33  Identities=33%  Similarity=0.530  Sum_probs=31.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      +|||+|||||.+|.++|+.|++.|++|+|+.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            589999999999999999999999999999875

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.27  E-value=0.0017  Score=60.77  Aligned_cols=44  Identities=25%  Similarity=0.327  Sum_probs=37.2

Q ss_pred             ccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 010101          364 PIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALA  407 (518)
Q Consensus       364 ~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la  407 (518)
                      +++||+|+|.|+ +|.|+++|..|++.|++|+++.|+.++.++++
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~   46 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA   46 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH
Confidence            478999999988 48999999999999999888888766655554

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.23  E-value=0.0047  Score=53.73  Aligned_cols=71  Identities=18%  Similarity=0.191  Sum_probs=51.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-ccccc------ccccCCCCccEEEEcCCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFEY------LHEFFPEKGMILANASAI  437 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~~------l~~~~~~~~divInatp~  437 (518)
                      .|.+|+|+|+|++|..++..+...|+ .|++++++++|.+ ++++++... +...+      +.......+|++|++++.
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~-~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~  110 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLK-LAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGS  110 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHH-HHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHH-HHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence            47899999999999999988888898 8999999988864 556676532 22211      111123458999999863

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.21  E-value=0.0039  Score=55.43  Aligned_cols=112  Identities=10%  Similarity=0.043  Sum_probs=70.1

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      ..+.++++.|+|.|..|++++..|...|.+|..++|..... ...+..+..  ...++.+ ...++|+|+.+.|..-  .
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~-~~~~~~~~~--~~~~l~~-~l~~sD~v~~~~plt~--~  113 (188)
T d2naca1          40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE-SVEKELNLT--WHATRED-MYPVCDVVTLNCPLHP--E  113 (188)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCH-HHHHHHTCE--ECSSHHH-HGGGCSEEEECSCCCT--T
T ss_pred             eeccccceeeccccccchhhhhhhhccCceEEEEeeccccc-ccccccccc--ccCCHHH-HHHhccchhhcccccc--c
Confidence            46789999999999999999999999999999999864322 112222211  1223333 3467899999988742  2


Q ss_pred             CCCCCCChhh---hcCCCEEEEEeeCCC-chHHHHHHHHCCCe
Q 010101          443 SDQSPVPKEA---LKAYELVFDAVYTPR-NTRLLREAAEVGAT  481 (518)
Q Consensus       443 ~~~~~~~~~~---l~~~~~v~Di~Y~P~-~T~ll~~A~~~G~~  481 (518)
                       ..-.+..+.   ++++.+++-+.=.+- +..-+..|-+.|..
T Consensus       114 -T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i  155 (188)
T d2naca1         114 -TEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL  155 (188)
T ss_dssp             -TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSE
T ss_pred             -chhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCc
Confidence             233466554   456666665543332 33334455555543

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.19  E-value=0.0071  Score=51.39  Aligned_cols=72  Identities=14%  Similarity=0.215  Sum_probs=48.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCH--HHHHHHHHHhcC----c--c--cccc--cccccCCCCccEEEE
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGA--RVIIFNRNY--ERAKALADAVSG----E--A--LHFE--YLHEFFPEKGMILAN  433 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~--~v~i~nRt~--~ka~~la~~~~~----~--~--~~~~--~l~~~~~~~~divIn  433 (518)
                      |+.|+|| |.+|.++++.|+..|.  ++.++++++  ++++.++.++..    .  .  +.+.  +..+ ...++|+||-
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~-~l~~aDvVVi   80 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLR-IIDESDVVII   80 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG-GGTTCSEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHH-HhccceEEEE
Confidence            6899996 9999999999999985  899999875  456655555431    1  0  1111  1112 3567999998


Q ss_pred             cCCCCCCC
Q 010101          434 ASAIGMEP  441 (518)
Q Consensus       434 atp~g~~~  441 (518)
                      |......|
T Consensus        81 tAG~~~~~   88 (145)
T d1hyea1          81 TSGVPRKE   88 (145)
T ss_dssp             CCSCCCCT
T ss_pred             ecccccCC
Confidence            86554444

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.10  E-value=0.00099  Score=61.73  Aligned_cols=41  Identities=24%  Similarity=0.433  Sum_probs=37.0

Q ss_pred             ccCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 010101          364 PIAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAK  404 (518)
Q Consensus       364 ~l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~ka~  404 (518)
                      +++||+++|.|++ |+|++++..|++.|++|.+++|+.++.+
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            5899999999984 8999999999999999999999876654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.09  E-value=0.0026  Score=59.82  Aligned_cols=55  Identities=25%  Similarity=0.348  Sum_probs=42.8

Q ss_pred             EeecCHHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          333 GYNTDCESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       333 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      +-|-|+..++...+..+.            ..-..|+|+|||+|-+|.++|+.|++.|.+|+|+.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~------------~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~   62 (370)
T d2iida1           8 FQENDYEEFLEIARNGLK------------ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS   62 (370)
T ss_dssp             GCCTTHHHHHHHHHHCSC------------CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             cCCccHHHHHHHHhcCCC------------CCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            356777777766443221            1224689999999999999999999999999999876

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.09  E-value=0.0031  Score=59.63  Aligned_cols=42  Identities=21%  Similarity=0.226  Sum_probs=37.2

Q ss_pred             cccCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 010101          363 SPIAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERAK  404 (518)
Q Consensus       363 ~~l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt~~ka~  404 (518)
                      .+++||++||.|++   |.|++++..|++.|++|.+.+|+.....
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~   48 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNI   48 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhh
Confidence            56899999999985   8999999999999999999999865433

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.03  E-value=0.0039  Score=54.35  Aligned_cols=70  Identities=20%  Similarity=0.178  Sum_probs=51.4

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccccccc--cCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEYLHE--FFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~--~~~~~~divInatp  436 (518)
                      +|++|+|.|+ |+.|.+++..++..|++|+.+.+++++.+ .++++|... +.+.+...  .....+|++++++.
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~-~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH-HHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccc-cccccccceeeehhhhhhhhhccccccccccccc
Confidence            5789999996 89999999999999999988899888764 556777643 33332111  02356899999763

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.0033  Score=58.27  Aligned_cols=41  Identities=17%  Similarity=0.264  Sum_probs=35.1

Q ss_pred             cCCcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 010101          365 IAGKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERAKA  405 (518)
Q Consensus       365 l~~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt~~ka~~  405 (518)
                      |+||++||.|++   |.|++++..|++.|++|++..|+.+..+.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~   46 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR   46 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            679999999874   69999999999999999999998554333

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.95  E-value=0.0027  Score=55.78  Aligned_cols=35  Identities=26%  Similarity=0.246  Sum_probs=32.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYE  401 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~  401 (518)
                      +|||+|||+|.+|..+|..|+++|+ .|+|+.|...
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            5899999999999999999999999 6999998743

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.90  E-value=0.0037  Score=56.81  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .++|+|||+|-+|.++|+.|+++|.+|+|+.|.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            478999999999999999999999999999985

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.90  E-value=0.083  Score=49.66  Aligned_cols=140  Identities=12%  Similarity=0.094  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEe-----------CCHHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFN-----------RNYERAKAL  406 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~n-----------Rt~~ka~~l  406 (518)
                      +.|.+.+++..+...+..+ ..-...+++|++++|-|.|-+|..++..|.+.|++|+-++           -+.+...+.
T Consensus         8 G~GV~~~~~~~l~~~~~~~-~~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~   86 (293)
T d1hwxa1           8 GRGVFHGIENFIENASYMS-ILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDF   86 (293)
T ss_dssp             HHHHHHHHHHHHTCHHHHH-HHTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccch-hccCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHH
Confidence            5677777766553211000 0000136889999999999999999999999999765443           355665555


Q ss_pred             HHHhcCc------ccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCC
Q 010101          407 ADAVSGE------ALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGA  480 (518)
Q Consensus       407 a~~~~~~------~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~  480 (518)
                      ....+..      .+.-+++   .-..+||+|-|.--+.-   +..  ....+ ...+|+.-.-+|-...-.+.-+++|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~---~~~~~DIliPaA~~~~I---~~~--~a~~l-~ak~I~EgAN~P~t~eA~~~L~~~gI  157 (293)
T d1hwxa1          87 KLQHGTILGFPKAKIYEGSI---LEVDCDILIPAASEKQL---TKS--NAPRV-KAKIIAEGANGPTTPQADKIFLERNI  157 (293)
T ss_dssp             HHTTSSSTTCTTSCBCCSCG---GGCCCSEEEECSSSSCB---CTT--TGGGC-CCSEEECCSSSCBCHHHHHHHHHTTC
T ss_pred             HHHcCCeecccccccCCccc---ccCCccEEeeccccccc---cHH--HHHHH-hhCEEeccCCCCCCcchHHHHHHCCC
Confidence            4433321      1111111   12468999977543321   211  11223 34688888888853333444468999


Q ss_pred             eeeccHH
Q 010101          481 TVVSGVE  487 (518)
Q Consensus       481 ~~i~G~~  487 (518)
                      .++|+.-
T Consensus       158 ~viPD~l  164 (293)
T d1hwxa1         158 MVIPDLY  164 (293)
T ss_dssp             EEECHHH
T ss_pred             EEeChhh
Confidence            9988754

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0045  Score=58.18  Aligned_cols=45  Identities=20%  Similarity=0.299  Sum_probs=38.4

Q ss_pred             CcEEE-EEcc-chhHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhc
Q 010101          367 GKIFV-LVGA-GGAGRALAFGAKSR-GARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       367 ~k~vl-vlGa-Gg~araia~~L~~~-G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ||+|. |.|+ +|.|++++..|++. |++|++++|+.++++++++++.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~   49 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ   49 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH
Confidence            67775 5565 69999999999976 7799999999999999988874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0093  Score=51.82  Aligned_cols=70  Identities=19%  Similarity=0.153  Sum_probs=51.1

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-ccccc--c-----cccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEY--L-----HEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~--l-----~~~~~~~~divInatp  436 (518)
                      +|.+|||.|+ |++|.+++..+..+|++|+++.+++++. ++++++|... ++..+  +     .......+|++++++.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~-~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ-KIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccccc-ccccccCcccccccccccHHHHhhhhhccCCceEEeeccc
Confidence            5789999996 9999999999999999998888888775 5667787643 22211  1     0112355899999874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.86  E-value=0.012  Score=50.92  Aligned_cols=71  Identities=18%  Similarity=0.214  Sum_probs=53.1

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-ccccccc----c----cCCCCccEEEEcC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHFEYLH----E----FFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~----~----~~~~~~divInat  435 (518)
                      .|.+|+|+|+||.+-.++..++..|+ +|++++++++|. ++++++|... +...+-.    .    ......|++|+++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl-~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~  106 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECV  106 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECS
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHH-HHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeec
Confidence            57899999999999999999999998 899999999986 6678888643 2222110    0    0124689999988


Q ss_pred             CC
Q 010101          436 AI  437 (518)
Q Consensus       436 p~  437 (518)
                      ..
T Consensus       107 G~  108 (175)
T d1cdoa2         107 GN  108 (175)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.66  E-value=0.011  Score=51.78  Aligned_cols=69  Identities=20%  Similarity=0.169  Sum_probs=51.9

Q ss_pred             EEEEEccchhHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHHhcCcc-----cccccccccCCCCccEEEEcCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSR-GARVI-IFNRNYERAKALADAVSGEA-----LHFEYLHEFFPEKGMILANASAIGM  439 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~-G~~v~-i~nRt~~ka~~la~~~~~~~-----~~~~~l~~~~~~~~divInatp~g~  439 (518)
                      |+.|||+|.+|+..+.++... +++|+ |++|+.++++++++.++...     -+++++-+  ..+.|+|+-+||...
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~iD~v~I~tp~~~   78 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLE--DPEIDALYVPLPTSL   78 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHH--CTTCCEEEECCCGGG
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhh--ccccceeeecccchh
Confidence            689999999999999999876 45654 89999999999999887421     13333321  246799999998653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.64  E-value=0.016  Score=49.93  Aligned_cols=71  Identities=17%  Similarity=0.137  Sum_probs=50.9

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCcc-ccc------cccc-ccCCCCccEEEEcC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEA-LHF------EYLH-EFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~-~~~------~~l~-~~~~~~~divInat  435 (518)
                      .+.+++|+|+ |++|..++..+...|+ +|+++.++++|. ++++++|... +..      +++. ......+|++|+++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~-~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~  105 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV-EAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN  105 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH-HHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhH-HHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhccc
Confidence            4789999995 8999999998988897 999999998885 5566777532 111      1111 11234589999998


Q ss_pred             CC
Q 010101          436 AI  437 (518)
Q Consensus       436 p~  437 (518)
                      +.
T Consensus       106 g~  107 (170)
T d1jvba2         106 NS  107 (170)
T ss_dssp             CC
T ss_pred             cc
Confidence            63

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.0065  Score=53.69  Aligned_cols=70  Identities=20%  Similarity=0.238  Sum_probs=52.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCccc-ccc------cccccCCCCccEEEEcCC
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGA-RVIIFNRNYERAKALADAVSGEAL-HFE------YLHEFFPEKGMILANASA  436 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~-~v~i~nRt~~ka~~la~~~~~~~~-~~~------~l~~~~~~~~divInatp  436 (518)
                      +++|||.|| ||+|.+++.-++..|+ .|..+.++.++.+.+++.++...+ ...      .+.+.....+|++++++.
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG  109 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG  109 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence            478999995 9999999988888999 677788899999999999886532 221      122223456999999885

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.61  E-value=0.013  Score=49.53  Aligned_cols=70  Identities=21%  Similarity=0.290  Sum_probs=48.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC-c-c------cccccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSG-E-A------LHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~-~-~------~~~~~l~~~~~~~~divInatp~  437 (518)
                      |+.|+|| |.+|.++++.|...|.  ++.+++.+..+++.+  ++.. . .      +...+..+ ...++|+||-+...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~--Dl~~~~~~~~~~~~~~~~~~~~-~~~~aDivVitag~   78 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA--DLSHIETRATVKGYLGPEQLPD-CLKGCDVVVIPAGV   78 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH--HHTTSSSSCEEEEEESGGGHHH-HHTTCSEEEECCSC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH--HHhhhhhhcCCCeEEcCCChHH-HhCCCCEEEECCCc
Confidence            7899996 9999999999999886  899999987665554  4431 1 1      11112222 35679999987665


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      ...|
T Consensus        79 ~~~~   82 (144)
T d1mlda1          79 PRKP   82 (144)
T ss_dssp             CCCT
T ss_pred             CCCC
Confidence            4443

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.60  E-value=0.025  Score=47.62  Aligned_cols=71  Identities=15%  Similarity=0.200  Sum_probs=47.6

Q ss_pred             EEEEEc-cchhHHHHHHHHHHCCC--eEEEEeC--CHHHHHHHHHHhcC----c-c--cccccccccCCCCccEEEEcCC
Q 010101          369 IFVLVG-AGGAGRALAFGAKSRGA--RVIIFNR--NYERAKALADAVSG----E-A--LHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       369 ~vlvlG-aGg~araia~~L~~~G~--~v~i~nR--t~~ka~~la~~~~~----~-~--~~~~~l~~~~~~~~divInatp  436 (518)
                      |+.|+| +|..|.++++.|...|.  ++.++++  +.++++..+.++..    . .  +...+.+  ...++|+||.|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~--~~~~aDiVvitaG   79 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE--DTAGSDVVVITAG   79 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG--GGTTCSEEEECCC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH--HhhhcCEEEEecc
Confidence            789999 69999999999999886  7999995  45555555544431    1 1  1112222  2467999998765


Q ss_pred             CCCCC
Q 010101          437 IGMEP  441 (518)
Q Consensus       437 ~g~~~  441 (518)
                      ..-.|
T Consensus        80 ~~~~~   84 (142)
T d1o6za1          80 IPRQP   84 (142)
T ss_dssp             CCCCT
T ss_pred             ccccc
Confidence            54443

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.58  E-value=0.0048  Score=53.79  Aligned_cols=69  Identities=22%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCC
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp  436 (518)
                      .+++|++.|||.|--|+|=+..|...|++|.|-.|..++..+.|+.-|.+..++++    ...++|+|...+|
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~e----A~~~aDiim~L~P   81 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKT----AVAAADVVMILTP   81 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHH----HHHTCSEEEECSC
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHH----HhhhcCeeeeecc
Confidence            35789999999999999999999999999999999887777777776666555554    3356899988887

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.46  E-value=0.018  Score=49.36  Aligned_cols=47  Identities=21%  Similarity=0.346  Sum_probs=41.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE  413 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~  413 (518)
                      .|.+|+|+|+|++|..++..++..|++|.+++++++|. +++++++..
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~-~~a~~~Ga~   73 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKL-ELARKLGAS   73 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHTTCS
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHH-HhhhccCcc
Confidence            47899999999999999999999999999999999886 567788764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.0046  Score=52.92  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=33.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAK  404 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~  404 (518)
                      ||+|+|+|.+|.+++..|++.|++|++++|+.++.+
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~   37 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYC   37 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhh
Confidence            799999999999999999999999999999976543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.33  E-value=0.018  Score=50.38  Aligned_cols=110  Identities=17%  Similarity=0.168  Sum_probs=69.6

Q ss_pred             cEEEEEccchhHHH-HHHHHHHCC--CeE-EEEeCCHHHHHHHHHHhcCcc--cccccccccCCCCccEEEEcCCCCCCC
Q 010101          368 KIFVLVGAGGAGRA-LAFGAKSRG--ARV-IIFNRNYERAKALADAVSGEA--LHFEYLHEFFPEKGMILANASAIGMEP  441 (518)
Q Consensus       368 k~vlvlGaGg~ara-ia~~L~~~G--~~v-~i~nRt~~ka~~la~~~~~~~--~~~~~l~~~~~~~~divInatp~g~~~  441 (518)
                      -++.|||+|.+|+. .+.++.+.+  ++| .|++|+.++++.+++.++...  -+++++-+  ..+.|+|+.+||.....
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~--~~~id~v~I~tp~~~h~   81 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLE--SGLVDAVDLTLPVELNL   81 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHH--SSCCSEEEECCCGGGHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeecccc--ccccceeeccccccccc
Confidence            37899999999986 467777654  354 489999999999999987542  24444321  24579999999865432


Q ss_pred             CCCCCCCChhhhcCC-CEEEEEeeCCCc------hHHHHHHHHCCCeeeccHH
Q 010101          442 NSDQSPVPKEALKAY-ELVFDAVYTPRN------TRLLREAAEVGATVVSGVE  487 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~-~~v~Di~Y~P~~------T~ll~~A~~~G~~~i~G~~  487 (518)
                      .     +....++.+ .+++|   +|.-      -.+.+.+++.|..+.-|..
T Consensus        82 ~-----~~~~al~~gk~V~~E---KPl~~~~~e~~~l~~~~~~~~~~~~v~~~  126 (181)
T d1zh8a1          82 P-----FIEKALRKGVHVICE---KPISTDVETGKKVVELSEKSEKTVYIAEN  126 (181)
T ss_dssp             H-----HHHHHHHTTCEEEEE---SSSSSSHHHHHHHHHHHHHCSSCEEEECG
T ss_pred             c-----ccccccccchhhhcC---CCCcCCHHHHHHHHHHHHHhCCeEEEEee
Confidence            1     222334443 33332   4442      3456666777776655544

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=95.31  E-value=0.0066  Score=56.81  Aligned_cols=42  Identities=29%  Similarity=0.443  Sum_probs=34.4

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHhc
Q 010101          370 FVLVGA-GGAGRALAFGAKSRGARVIIF-NRNYERAKALADAVS  411 (518)
Q Consensus       370 vlvlGa-Gg~araia~~L~~~G~~v~i~-nRt~~ka~~la~~~~  411 (518)
                      ++|.|+ +|.|++++..|++.|++|.|. .|+.++++++++++.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~   48 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLN   48 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHH
Confidence            566677 589999999999999998886 456778888877764

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.28  E-value=0.0098  Score=51.67  Aligned_cols=105  Identities=14%  Similarity=0.182  Sum_probs=64.3

Q ss_pred             cEEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCCCCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR-GA-RVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQ  445 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~-G~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~  445 (518)
                      -|+.|+|+|.+|+..+.++.+. ++ -+.|++|+.++...      .......+... ...+.|+|+.|||.....    
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~------~~~~~~~~~~~-~~~~~D~Vvi~tp~~~h~----   72 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK------TPVFDVADVDK-HADDVDVLFLCMGSATDI----   72 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS------SCEEEGGGGGG-TTTTCSEEEECSCTTTHH----
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc------cccccchhhhh-hccccceEEEeCCCcccH----
Confidence            4799999999999999999875 45 46689998654321      11112223323 345789999999976432    


Q ss_pred             CCCChhhhcCCCEEEEEeeCCC-----c-hHHHHHHHHCCCeeecc
Q 010101          446 SPVPKEALKAYELVFDAVYTPR-----N-TRLLREAAEVGATVVSG  485 (518)
Q Consensus       446 ~~~~~~~l~~~~~v~Di~Y~P~-----~-T~ll~~A~~~G~~~i~G  485 (518)
                       ++....|..+.-|++ +..|.     . ..+.+.|++.|..++-|
T Consensus        73 -~~a~~aL~aG~~vv~-~~~~~~~~~~~~~~l~~~A~~~~~~~~i~  116 (170)
T d1f06a1          73 -PEQAPKFAQFACTVD-TYDNHRDIPRHRQVMNEAATAAGNVALVS  116 (170)
T ss_dssp             -HHHHHHHTTTSEEEC-CCCCGGGHHHHHHHHHHHHHHHTCEEECS
T ss_pred             -HHHHHHHHCCCcEEE-ecCccccCHHHHHHHHHHHHhcCceEEEe
Confidence             123345666654443 22232     1 34555777778765543

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.27  E-value=0.0055  Score=56.67  Aligned_cols=46  Identities=24%  Similarity=0.270  Sum_probs=40.1

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSG  412 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~  412 (518)
                      .|+|||.|+ +|.|++++..|++.|+  +|++..|+.++++++.+..+.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~   51 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDS   51 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCC
Confidence            489999988 5899999999999996  788999999999998876543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.019  Score=48.61  Aligned_cols=136  Identities=14%  Similarity=0.146  Sum_probs=80.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---ccc-----ccccccccCCCCccEEEEcCCCCCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSG---EAL-----HFEYLHEFFPEKGMILANASAIGME  440 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~---~~~-----~~~~l~~~~~~~~divInatp~g~~  440 (518)
                      +++|+|.|..|+.++..|.+.|.+++++..++++..+..+....   ..+     ..+.|....+.+++.+|-+|+-...
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            69999999999999999999999999999998887766655422   111     1122333357789999988752110


Q ss_pred             CCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHCCCe-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 010101          441 PNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEVGAT-VVSGVEMFIRQALGQFRLFTGGLAPEDFMRK  512 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~G~~-~i~G~~ml~~Qa~~qf~lw~g~~~p~~~~~~  512 (518)
                      ..  ...+....+.+..-++=.+..|...   +..++.|+. +++- ..+..+.+.  +.-.|.....+.+.+
T Consensus        85 n~--~~~~~~r~~~~~~~iia~~~~~~~~---~~l~~~Gad~vi~p-~~~~~~~l~--~~l~~~~v~~~~~~~  149 (153)
T d1id1a_          85 NA--FVVLSAKDMSSDVKTVLAVSDSKNL---NKIKMVHPDIILSP-QLFGSEILA--RVLNGEEINNDMLVS  149 (153)
T ss_dssp             HH--HHHHHHHHHTSSSCEEEECSSGGGH---HHHHTTCCSEEECH-HHHHHHHHH--HHHTTCCCCHHHHHH
T ss_pred             HH--HHHHHHHHhCCCCceEEEEcCHHHH---HHHHHCCCCEEECH-HHHHHHHHH--HHhCcCCCCHHHHHH
Confidence            00  0000001133443344455566555   444677884 5554 333333333  234466666665544

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.17  E-value=0.026  Score=49.16  Aligned_cols=70  Identities=17%  Similarity=0.240  Sum_probs=49.5

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccc------c-ccccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFE------Y-LHEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~------~-l~~~~~~~~divInatp  436 (518)
                      +|.+|+|.|+ |+.|.+++...+..|++|+.+.|+.++.+ .++.++... +...      . +........|+++|++.
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~-~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIA-YLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHH-HHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC
Confidence            5889999999 55998888888899999999999988764 455666542 2111      1 11113456899999875

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.14  E-value=0.72  Score=41.73  Aligned_cols=133  Identities=18%  Similarity=0.160  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHH-CCCe-EEEEeC----------CHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKS-RGAR-VIIFNR----------NYERAKA  405 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~-~G~~-v~i~nR----------t~~ka~~  405 (518)
                      +.|...+++..+... |       ..+++|++++|-|.|-+|..++..|.+ .|++ |.+.+.          +.+...+
T Consensus        11 g~Gv~~~~~~~~~~~-g-------~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~   82 (239)
T d1gtma1          11 ARGASYTIREAAKVL-G-------WDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLK   82 (239)
T ss_dssp             HHHHHHHHHHHHHHT-T-------CSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHH
T ss_pred             hHHHHHHHHHHHHHh-C-------CCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHH
Confidence            567777777666543 2       135899999999999999999999875 5885 445443          3444444


Q ss_pred             HHHHhcC-------cccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhcCCCEEEEEeeCCCchHHHHHHHHC
Q 010101          406 LADAVSG-------EALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALKAYELVFDAVYTPRNTRLLREAAEV  478 (518)
Q Consensus       406 la~~~~~-------~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~~~~~v~Di~Y~P~~T~ll~~A~~~  478 (518)
                      .....+.       +.++.+++-   ..++||++-|.--+.-   +....  ..+ ...+|....-+|....-.+.-+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~---~~~~DIl~PcA~~~~I---~~~~a--~~i-~ak~I~e~AN~p~t~ea~~~L~~r  153 (239)
T d1gtma1          83 WKNEHGSVKDFPGATNITNEELL---ELEVDVLAPAAIEEVI---TKKNA--DNI-KAKIVAEVANGPVTPEADEILFEK  153 (239)
T ss_dssp             HHHHHSSSTTCTTSEEECHHHHH---HSCCSEEEECSCSCCB---CTTGG--GGC-CCSEEECCSSSCBCHHHHHHHHHT
T ss_pred             HHHhccccccCCCCeeecccccc---cccccEEeeccccccc---cHHHH--Hhc-cccEEEecCCCCCCHHHHHHHHHC
Confidence            4333321       111112221   2468999977654421   21111  123 346888888888644444445789


Q ss_pred             CCeeeccHH
Q 010101          479 GATVVSGVE  487 (518)
Q Consensus       479 G~~~i~G~~  487 (518)
                      |+.++|..-
T Consensus       154 gI~~iPD~~  162 (239)
T d1gtma1         154 GILQIPDFL  162 (239)
T ss_dssp             TCEEECHHH
T ss_pred             CCEEecchh
Confidence            999887654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.13  E-value=0.012  Score=54.18  Aligned_cols=43  Identities=26%  Similarity=0.427  Sum_probs=35.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhc
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYE-RAKALADAVS  411 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~-ka~~la~~~~  411 (518)
                      .+||.|+ +|.|++++.+|++.|++|.+++|+.+ .++++++++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~   47 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELN   47 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHH
Confidence            4788888 58999999999999999999999855 4677777664

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.11  E-value=0.018  Score=49.23  Aligned_cols=48  Identities=25%  Similarity=0.396  Sum_probs=41.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA  414 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~  414 (518)
                      .|.+++|.|+|++|.+++..+...|++|+++.++++|.+ .++++|...
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~-~~k~~Ga~~   74 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLE-LAKELGADL   74 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH-HHHHTTCSE
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhh-hhhhcCcce
Confidence            478999999999999999999999999999999999865 567787643

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.0079  Score=51.08  Aligned_cols=37  Identities=16%  Similarity=0.407  Sum_probs=33.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      ..++||++||+|+|..|..-+..|.+.|++|+|+...
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4578999999999999999999999999999999754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.09  E-value=0.0082  Score=54.88  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=31.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .+||+|||||.+|.++|..|++.|++|+|+.|+.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4789999999999999999999999999999853

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.08  E-value=0.14  Score=47.15  Aligned_cols=130  Identities=15%  Similarity=0.146  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAKSRGARVI-IFNR----------NYERAKAL  406 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~~~G~~v~-i~nR----------t~~ka~~l  406 (518)
                      +.|.+.+++..+... +        .+++|++++|-|.|-+|+.++..|.+.|++|+ |.+.          +.++..+.
T Consensus        16 G~Gv~~~~~~~~~~~-~--------~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~   86 (255)
T d1bgva1          16 GYGSVYYVEAVMKHE-N--------DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINY   86 (255)
T ss_dssp             HHHHHHHHHHHHHHT-T--------CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHH
T ss_pred             hHHHHHHHHHHHHhC-C--------CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHH
Confidence            667777777766543 2        57899999999999999999999999999655 4432          23333222


Q ss_pred             HHH---------------hcCcccccccccccCCCCccEEEEcCCCCCCCCCCCCCCChh---hhc--CCCEEEEEeeCC
Q 010101          407 ADA---------------VSGEALHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKE---ALK--AYELVFDAVYTP  466 (518)
Q Consensus       407 a~~---------------~~~~~~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~---~l~--~~~~v~Di~Y~P  466 (518)
                      ..+               .+.+.++-+++   ...++||+|-|.--+        .+..+   .++  ..++|+.-.-+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~DiliPcA~~~--------~I~~~~a~~l~a~~ck~I~EgAN~p  155 (255)
T d1bgva1          87 MLEMRASGRNKVQDYADKFGVQFFPGEKP---WGQKVDIIMPCATQN--------DVDLEQAKKIVANNVKYYIEVANMP  155 (255)
T ss_dssp             HHHHHHHCCCCTHHHHHHHTCEEEETCCG---GGSCCSEEECCSCTT--------CBCHHHHHHHHHTTCCEEECCSSSC
T ss_pred             HHHHhhhcCcchhhhhhhcCceeechhhc---ccccccEEeeccccc--------cccHHHHHhhhhcCceEEecCCCCC
Confidence            211               11111122222   124689998553221        24443   243  247899988888


Q ss_pred             CchHHHHH-HHHCCCeeeccHH
Q 010101          467 RNTRLLRE-AAEVGATVVSGVE  487 (518)
Q Consensus       467 ~~T~ll~~-A~~~G~~~i~G~~  487 (518)
                      -..+=.+. .+++|+.+++..-
T Consensus       156 ~t~ea~~~ll~~~gI~vvPD~l  177 (255)
T d1bgva1         156 TTNEALRFLMQQPNMVVAPSKA  177 (255)
T ss_dssp             BCHHHHHHHHHCTTCEEECHHH
T ss_pred             cchHHHHHHHHhcCCEEehHhh
Confidence            53332233 3557998887654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.06  E-value=0.0031  Score=58.27  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      |.|+|.|+ +|.|++++..|++.|++|.+++|+.+
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            56788887 68999999999999999999998754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.92  E-value=0.012  Score=52.35  Aligned_cols=69  Identities=10%  Similarity=0.002  Sum_probs=45.9

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCcccccc---cccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGA--RVIIFNRNYERAKALADAVSGEALHFE---YLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~--~v~i~nRt~~ka~~la~~~~~~~~~~~---~l~~~~~~~~divInatp~  437 (518)
                      ++|||.|+ |.+|++++..|.+.|.  .|+...|++++.+.+.........++.   .+.. ...++|.||++...
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINP-AFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHH-HHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeecccccccc-ccccceeeEEEEee
Confidence            68999996 8899999999999996  566678998877654322211111111   2222 24568999987654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.91  E-value=0.026  Score=49.02  Aligned_cols=70  Identities=21%  Similarity=0.147  Sum_probs=50.6

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-ccc--cc----cc-cCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-HFE--YL----HE-FFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-~~~--~l----~~-~~~~~~divInatp  436 (518)
                      +|.+|||.|+ |++|.+++.-+...|+++.++.++.++. +.+++++...+ ...  ++    .+ .....+|++++++.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~-~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g  103 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR-EMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA  103 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccc-cccccccccccccCCccCHHHHHHHHhCCCCEEEEEeccc
Confidence            4789999986 9999999988888999988888998886 45667775432 211  11    11 12356899999885

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.87  E-value=0.012  Score=56.43  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=31.4

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .|+++|||||-+|.++|+.|++.|.+|+|+.++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~   34 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQR   34 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECC
Confidence            589999999999999999999999999999987

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.82  E-value=0.0097  Score=54.47  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=32.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      +||+|||.|+ ||.|++++..|++.|++|.+++|+..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4799999998 68999999999999999999988654

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=94.79  E-value=0.021  Score=49.02  Aligned_cols=95  Identities=12%  Similarity=-0.016  Sum_probs=59.6

Q ss_pred             cEEEEEccchhHHHH-HHHHHHCCC-e-EEEEeCCHH-HHHHHHHHhcCccc--ccccccc-cCCCCccEEEEcCCCCCC
Q 010101          368 KIFVLVGAGGAGRAL-AFGAKSRGA-R-VIIFNRNYE-RAKALADAVSGEAL--HFEYLHE-FFPEKGMILANASAIGME  440 (518)
Q Consensus       368 k~vlvlGaGg~arai-a~~L~~~G~-~-v~i~nRt~~-ka~~la~~~~~~~~--~~~~l~~-~~~~~~divInatp~g~~  440 (518)
                      -|+.|||+|++|+.. ...|..... + +.+++|+.+ +..+.++.++....  .++++.+ ....+.|+|+.|||.|..
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            479999999999864 556655554 5 456788865 55677888875431  2232211 112468999999998743


Q ss_pred             CCCCCCCCChhhhcCCCEEEEEeeC
Q 010101          441 PNSDQSPVPKEALKAYELVFDAVYT  465 (518)
Q Consensus       441 ~~~~~~~~~~~~l~~~~~v~Di~Y~  465 (518)
                      ..  . .......+.+..|+|....
T Consensus        85 ~~--~-~~~~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          85 VQ--N-EALLRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             HH--H-HHHHHHHCTTCEEEECSTT
T ss_pred             HH--h-HHHHHHHHcCCEEEEcccc
Confidence            21  0 0112235678899999864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.73  E-value=0.0093  Score=54.22  Aligned_cols=37  Identities=32%  Similarity=0.553  Sum_probs=32.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERA  403 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka  403 (518)
                      +|++||.|+ +|.|++++..|++.|++|.+++|+.+..
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~   38 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGE   38 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccc
Confidence            378999988 6899999999999999999999987653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.0072  Score=55.78  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNR  398 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nR  398 (518)
                      +++++|+|+|+||.|..++..|+..|+ ++++++.
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            557899999999999999999999999 9999884

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.015  Score=53.79  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=30.6

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .++|+|||||-+|.++|+.|++.|++|+|+-++
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            468999999999999999999999999999765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.55  E-value=0.013  Score=52.06  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=29.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      +|+|||||-+|.++|+.|++.|. +|+|+.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            58999999999999999999998 79999886

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.55  E-value=0.014  Score=53.04  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .+++++|||+|.+|.++|..|++.|++|+|+.++.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            57899999999999999999999999999998864

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.38  E-value=0.07  Score=50.92  Aligned_cols=71  Identities=14%  Similarity=0.143  Sum_probs=50.3

Q ss_pred             CCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----cc-----cccc---cccccCCCCccEEE
Q 010101          366 AGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERAKALADAVSG----EA-----LHFE---YLHEFFPEKGMILA  432 (518)
Q Consensus       366 ~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~----~~-----~~~~---~l~~~~~~~~divI  432 (518)
                      +||+|||.|+.| .|..++..|.+.|++|..+.|+.++...+.+....    ..     .++.   .+.. ...++|.++
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~~~v~   88 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE-VIKGAAGVA   88 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT-TTTTCSEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhh-hcccchhhh
Confidence            589999999855 99999999999999999999999887776543321    10     0111   1222 456788888


Q ss_pred             EcCCC
Q 010101          433 NASAI  437 (518)
Q Consensus       433 natp~  437 (518)
                      +....
T Consensus        89 ~~a~~   93 (342)
T d1y1pa1          89 HIASV   93 (342)
T ss_dssp             ECCCC
T ss_pred             hhccc
Confidence            76543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.35  E-value=0.026  Score=46.13  Aligned_cols=35  Identities=20%  Similarity=0.204  Sum_probs=32.1

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      ++++++|+|+|.+|.-+|..|.++|.+|+++.|..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            46899999999999999999999999999998753

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.35  E-value=0.023  Score=45.87  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=32.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      .++++|+|+|-+|--+|..|.++|.+|+++.|...
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            47999999999999999999999999999998643

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.33  E-value=0.025  Score=51.99  Aligned_cols=43  Identities=26%  Similarity=0.532  Sum_probs=36.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHhc
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGARVIIF-NRNYERAKALADAVS  411 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~~v~i~-nRt~~ka~~la~~~~  411 (518)
                      -|||.|+ +|.|++++..|++.|++|.+. .|+.++++++++++.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~   47 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIE   47 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            4677776 689999999999999999885 678888888877663

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.28  E-value=1.6  Score=39.07  Aligned_cols=130  Identities=15%  Similarity=0.111  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCCcccCCcEEEEEccchhHHHHHHHHH-HCCCeEEEEe-C----------CHHHHHH
Q 010101          338 CESAISAIEDALRERQGINGVASHTSPIAGKIFVLVGAGGAGRALAFGAK-SRGARVIIFN-R----------NYERAKA  405 (518)
Q Consensus       338 ~~G~~~~l~~~l~~~~~~~~~~~~~~~l~~k~vlvlGaGg~araia~~L~-~~G~~v~i~n-R----------t~~ka~~  405 (518)
                      +.|...+++..+... +        .++++++++|-|.|-+|+.++..|. +.|++|+-++ .          +.+....
T Consensus        11 g~Gv~~~~~~~~~~~-~--------~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~   81 (234)
T d1b26a1          11 GRGVKVCAGLAMDVL-G--------IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIR   81 (234)
T ss_dssp             HHHHHHHHHHHHHHT-T--------CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHc-C--------CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHH
Confidence            567777776655442 2        4689999999999999999999996 5698655333 2          3444444


Q ss_pred             HHHHhcCcc-------cccccccccCCCCccEEEEcCCCCCCCCCCCCCCChhhhc--CCCEEEEEeeCCCchHHHHHHH
Q 010101          406 LADAVSGEA-------LHFEYLHEFFPEKGMILANASAIGMEPNSDQSPVPKEALK--AYELVFDAVYTPRNTRLLREAA  476 (518)
Q Consensus       406 la~~~~~~~-------~~~~~l~~~~~~~~divInatp~g~~~~~~~~~~~~~~l~--~~~~v~Di~Y~P~~T~ll~~A~  476 (518)
                      ..+..+...       ++.+++   ....+||+|-|.--+        .+..+...  ...+|+...-+|....--+.-+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~DI~~PcA~~~--------~I~~~~a~~l~~~~I~e~AN~p~t~~a~~~L~  150 (234)
T d1b26a1          82 YKKEHGTVVTYPKGERITNEEL---LELDVDILVPAALEG--------AIHAGNAERIKAKAVVEGANGPTTPEADEILS  150 (234)
T ss_dssp             HHHHSSCSTTCSSCEEECHHHH---HTSCCSEEEECSCTT--------CBCHHHHTTCCCSEEECCSSSCBCHHHHHHHH
T ss_pred             HHHhhcceeccccceeeccccc---cccccceeecchhcc--------cccHHHHHHhhhceEeecCCCCCCHHHHHHHH
Confidence            444333211       111111   124689999764322        14443221  2367888887775333333447


Q ss_pred             HCCCeeeccHH
Q 010101          477 EVGATVVSGVE  487 (518)
Q Consensus       477 ~~G~~~i~G~~  487 (518)
                      ++|+.+++..-
T Consensus       151 ~rgI~~~PD~~  161 (234)
T d1b26a1         151 RRGILVVPDIL  161 (234)
T ss_dssp             HTTCEEECHHH
T ss_pred             HCCeEEechHH
Confidence            79999888664

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.28  E-value=0.024  Score=46.23  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=31.8

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      +++++|+|+|.+|--+|.+|+++|.+|+++.|.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            5899999999999999999999999999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.024  Score=45.80  Aligned_cols=34  Identities=26%  Similarity=0.245  Sum_probs=31.6

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .++++|+|+|-+|--+|..|.++|.+|+++.|..
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            4789999999999999999999999999999963

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.18  E-value=0.018  Score=49.05  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=31.0

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~  400 (518)
                      |||++|||+|-+|-.+|..|.++|.  +|+++.+++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            7999999999999999999999885  899998875

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.17  E-value=0.044  Score=47.54  Aligned_cols=70  Identities=19%  Similarity=0.216  Sum_probs=44.7

Q ss_pred             cEEEEEccchhH--HHHHHHHHHC----CCeEEEEeCCHHHHHHHHHHhc-------Ccc--cccccccccCCCCccEEE
Q 010101          368 KIFVLVGAGGAG--RALAFGAKSR----GARVIIFNRNYERAKALADAVS-------GEA--LHFEYLHEFFPEKGMILA  432 (518)
Q Consensus       368 k~vlvlGaGg~a--raia~~L~~~----G~~v~i~nRt~~ka~~la~~~~-------~~~--~~~~~l~~~~~~~~divI  432 (518)
                      -|+.|||+|.++  .++...|...    +.+|.++++++++++..+..+.       ...  ....+..+ .+.++|+||
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~e-aL~dad~Vv   81 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDD-VIIDADFVI   81 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHH-HHTTCSEEE
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhh-cccCCCeEe
Confidence            489999999555  4455455532    2399999999999887554332       111  11123333 457799999


Q ss_pred             EcCCCC
Q 010101          433 NASAIG  438 (518)
Q Consensus       433 natp~g  438 (518)
                      ++..+|
T Consensus        82 ~~~~~g   87 (171)
T d1obba1          82 NTAMVG   87 (171)
T ss_dssp             ECCCTT
T ss_pred             eecccc
Confidence            987654

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=94.11  E-value=0.024  Score=52.20  Aligned_cols=44  Identities=25%  Similarity=0.424  Sum_probs=35.9

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCH---HHHHHHHHHh
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGA-RVIIFNRNY---ERAKALADAV  410 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~-~v~i~nRt~---~ka~~la~~~  410 (518)
                      ++++||.|+ ||+|++++..|++.|+ +|.+++|+.   +.++++.+++
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l   57 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAEL   57 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHH
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHH
Confidence            568999986 7899999999999999 799999974   4455655554

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.07  E-value=0.017  Score=52.70  Aligned_cols=31  Identities=29%  Similarity=0.509  Sum_probs=29.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      +|+|||||-+|.++|+.|++.|++|+|+.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            5899999999999999999999999999875

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.06  E-value=0.028  Score=45.53  Aligned_cols=33  Identities=30%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .++++|+|+|-+|--+|..|+.+|.+|+++.|.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~   54 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG   54 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehh
Confidence            479999999999999999999999999999985

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.04  E-value=0.016  Score=52.84  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      +++|||.|+ ||+|++++..|++.|++|++++|+.++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            357999988 689999999999999999999998653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.00  E-value=0.042  Score=48.81  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=36.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALAD  408 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~  408 (518)
                      ++.|+|+|-.|.+.|..|++.|.+|+.++.+.++.+++-+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcc
Confidence            6899999999999999999999999999999998887753

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.059  Score=46.44  Aligned_cols=70  Identities=20%  Similarity=0.192  Sum_probs=49.2

Q ss_pred             CCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccc--cc----cc-cCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFE--YL----HE-FFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~--~l----~~-~~~~~~divInatp  436 (518)
                      +|++|+|.|+|| .|.+++..++..|++|+++.++.+|.+. ++++|... +...  ++    .+ ..-...|+++++..
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~-~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g  106 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS-ALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG  106 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHH-HHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHH-HHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCcc
Confidence            478999997655 9988888888889999999999998744 56677542 2221  11    11 02345799999875

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.96  E-value=0.017  Score=53.07  Aligned_cols=41  Identities=27%  Similarity=0.344  Sum_probs=35.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHH
Q 010101          368 KIFVLVGA-GGAGRALAFGAKS---RGARVIIFNRNYERAKALAD  408 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~---~G~~v~i~nRt~~ka~~la~  408 (518)
                      |+|||.|+ +|.|++++..|.+   .|++|+++.|+.++++++.+
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~   47 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED   47 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            78999998 6899999999864   57899999999998887754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.94  E-value=0.027  Score=45.99  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=31.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .++++|+|+|-.|--+|..|.++|++|+|+.|..
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            4799999999999999999999999999999864

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.81  E-value=0.027  Score=48.86  Aligned_cols=71  Identities=13%  Similarity=0.102  Sum_probs=43.9

Q ss_pred             CcEEEEEccchhH--HHHHHHHHHC---CC-eEEEEeCCHHHHHHHHHHhcC-------cc--cccccccccCCCCccEE
Q 010101          367 GKIFVLVGAGGAG--RALAFGAKSR---GA-RVIIFNRNYERAKALADAVSG-------EA--LHFEYLHEFFPEKGMIL  431 (518)
Q Consensus       367 ~k~vlvlGaGg~a--raia~~L~~~---G~-~v~i~nRt~~ka~~la~~~~~-------~~--~~~~~l~~~~~~~~div  431 (518)
                      .-++.|+|||..+  .++...|...   .. +|.+++.++++++..+..+..       ..  ....+..+ .+.++|+|
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e-al~~AD~V   81 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEE-AFTDVDFV   81 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHH-HHSSCSEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhh-ccCCCCEE
Confidence            3579999999654  3344444322   23 899999999998865544321       11  11123223 35679999


Q ss_pred             EEcCCCC
Q 010101          432 ANASAIG  438 (518)
Q Consensus       432 Inatp~g  438 (518)
                      |+|..++
T Consensus        82 vitag~~   88 (167)
T d1u8xx1          82 MAHIRVG   88 (167)
T ss_dssp             EECCCTT
T ss_pred             EECCCcC
Confidence            9998654

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.69  E-value=0.055  Score=46.65  Aligned_cols=70  Identities=20%  Similarity=0.198  Sum_probs=49.5

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-ccccc-----ccccCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEY-----LHEFFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~-----l~~~~~~~~divInatp  436 (518)
                      ++.+|||.|+ ||+|.+++.-.+.+|++|+.+.|+.+|.+.+ ++++... +..++     +........|+++++..
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~-~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL-KQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG   99 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH-HHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH-HhhcccceEeccchhchhhhcccCCCceEEEecCc
Confidence            4567999986 8999999888888999999999998887655 5566543 22221     11112356899998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.64  E-value=0.027  Score=51.76  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .|+|||+|-+|.++|+.|++.|.+|+|+.|..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999863

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.58  E-value=0.027  Score=49.59  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=29.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .|+|||||-+|.++|+.|++.|.+|+|+.|..
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            48999999999999999999999999999964

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.58  E-value=0.033  Score=45.34  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=31.6

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      +++++|+|+|.+|--+|..|.++|.+|+++.|.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            4789999999999999999999999999999864

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.55  E-value=0.054  Score=40.51  Aligned_cols=45  Identities=20%  Similarity=0.271  Sum_probs=36.7

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVS  411 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~  411 (518)
                      ++.+++|.|+ ||+|..++.-++..|++|+.+.+++++.+-+ +++|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~-~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL-KSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH-HHCC
Confidence            5788999977 8899999988889999999999998886443 4443

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.46  E-value=0.024  Score=52.36  Aligned_cols=41  Identities=12%  Similarity=0.178  Sum_probs=35.8

Q ss_pred             EEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 010101          369 IFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYERAKALADA  409 (518)
Q Consensus       369 ~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~ka~~la~~  409 (518)
                      +++|.|++ |.|++++..|++.|++|.+.+|+.++.+++.+.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~   43 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAF   43 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhh
Confidence            68999885 799999999999999999999998887776543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.43  E-value=0.048  Score=44.16  Aligned_cols=34  Identities=24%  Similarity=0.191  Sum_probs=31.5

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .++++|+|+|-.|--+|..|+++|++|+++.|..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            4889999999999999999999999999999853

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.042  Score=44.87  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=31.3

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .|+++|+|+|-+|--+|..|+.+|.+|+++.|.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~   54 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRH   54 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeec
Confidence            479999999999999999999999999999996

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.35  E-value=0.055  Score=47.14  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=49.9

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-ccccc-----ccccCCCCccEEEEcCC
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEY-----LHEFFPEKGMILANASA  436 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~-----l~~~~~~~~divInatp  436 (518)
                      -+|.+|||.|+ ||+|.+++.-++..|++|+.+.+++++. +.++.++... +..++     .........|+|+++..
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~-~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg  107 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH-DYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG  107 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH-HHHHHTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHH-HHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence            35789999995 8899998888889999999999998885 4556677543 22211     11112356899999764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.31  E-value=0.033  Score=44.77  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .++++|+|+|.+|--+|..|+++|++|+++.|.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~   53 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR   53 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeee
Confidence            489999999999999999999999999999885

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.29  E-value=0.042  Score=45.45  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=32.2

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .+++++|+|+|-+|--+|..|.++|.+|+++.|.+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            36899999999999999999999999999999863

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.25  E-value=0.032  Score=50.89  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=29.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA-RVIIFNRNY  400 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~-~v~i~nRt~  400 (518)
                      +|+|||+|.+|.++|..|++.|. +|+|+.|.+
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            69999999999999999999997 999999864

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.027  Score=50.99  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=47.1

Q ss_pred             cCCcEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHH-HHHhcCccccccc---ccccCCCCccEEEEcCCC
Q 010101          365 IAGKIFVLVGA-GGAGRALAFGAKSRGA--RVIIFNRNYERAKAL-ADAVSGEALHFEY---LHEFFPEKGMILANASAI  437 (518)
Q Consensus       365 l~~k~vlvlGa-Gg~araia~~L~~~G~--~v~i~nRt~~ka~~l-a~~~~~~~~~~~~---l~~~~~~~~divInatp~  437 (518)
                      .++++|||+|| |..|+.++..|.+.|.  +|++++|++.+.... ...+.....++++   +.. ....+|++|++...
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~-~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYAS-AFQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGG-GGSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccc-cccccccccccccc
Confidence            35789999988 7799999999998885  899999975432211 0111111123333   333 35678999998753

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=93.14  E-value=0.47  Score=41.80  Aligned_cols=151  Identities=17%  Similarity=0.137  Sum_probs=88.0

Q ss_pred             eecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CC---cHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHHHHHH
Q 010101           14 QLECETTEEMQASIEQAKVEGADLVELCIDSME-FS---HISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVL   89 (518)
Q Consensus        14 ~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~---~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll   89 (518)
                      .||.++.....+.++.+++.|+++|-+|.=.+. .+   .+..+..+.+..+.|+|+.-+                   +
T Consensus        10 ~ITd~~~~~~~~~v~~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~liind~-------------------~   70 (206)
T d1xi3a_          10 VITDRRLKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDR-------------------V   70 (206)
T ss_dssp             EECCTTTSCHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC-------------------H
T ss_pred             EEeCCcccCHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEechh-------------------H
Confidence            467777766677888889999999999974443 11   122344444557889987532                   2


Q ss_pred             HHHhhcCCcEEEEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEccc--CCc--
Q 010101           90 RRALDLDVEFVEMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAV--DSI--  165 (518)
Q Consensus        90 ~~~~~~g~~yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~--~~~--  165 (518)
                      +.+.+.+++.|=+.-+..+-...   ....++.-+..|.|+.       ++    +.++...|+|.+=+-..-  .+.  
T Consensus        71 ~lA~~~~adGvHl~~~~~~~~~~---~~~~~~~iig~s~h~~-------~e----~~~a~~~g~DYi~~gpvf~T~tk~~  136 (206)
T d1xi3a_          71 DVALAVDADGVQLGPEDMPIEVA---KEIAPNLIIGASVYSL-------EE----ALEAEKKGADYLGAGSVFPTKTKED  136 (206)
T ss_dssp             HHHHHHTCSEEEECTTSCCHHHH---HHHCTTSEEEEEESSH-------HH----HHHHHHHTCSEEEEECSSCC----C
T ss_pred             HHHHhccCceEeeccccccHhhh---hhcccccccccccCCH-------HH----HHHHHhcCCCEEEeccccccccccc
Confidence            34556788888775443321111   1123455667788854       23    345566799988774321  121  


Q ss_pred             ---ccHHHHHHHhccCCCCEEEEecCCccchhhhc
Q 010101          166 ---TDLAPVFEMLTHCQVPLIALAVGSRGLISQLL  197 (518)
Q Consensus       166 ---~D~~~l~~~~~~~~~p~i~~~mG~~G~~sRi~  197 (518)
                         -....+-++.+..++|+++++=-..-.+..++
T Consensus       137 ~~~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~  171 (206)
T d1xi3a_         137 ARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVL  171 (206)
T ss_dssp             CCCCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHH
T ss_pred             cccccHHHHHHHHHhcCCCEEEECCCCHHHHHHHH
Confidence               23444455556668899887533334444443

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.08  E-value=0.022  Score=51.02  Aligned_cols=33  Identities=15%  Similarity=0.055  Sum_probs=29.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCC-------CeEEEEeCCH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRG-------ARVIIFNRNY  400 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G-------~~v~i~nRt~  400 (518)
                      .+|+|||+|.+|.++|+.|.++|       ++|+|+.+.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            58999999999999999999887       4799999864

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.08  E-value=0.11  Score=45.22  Aligned_cols=70  Identities=14%  Similarity=0.128  Sum_probs=48.4

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcc-cccccccc---cCCCCccEEEEcCC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEA-LHFEYLHE---FFPEKGMILANASA  436 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~-~~~~~l~~---~~~~~~divInatp  436 (518)
                      .+.++||.|+ ||.|.+++.-++.+|++|+.+.|+.++.+ .++.++... +..++...   ......|.+|++..
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~-~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg  105 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHE-YLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG  105 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHH-HHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHH-HHHhhccccccccccHHHHHHHHhhcCCeeEEEcc
Confidence            3457888876 89999999888999999999999999975 446777543 23322111   11234688888763

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.081  Score=44.51  Aligned_cols=71  Identities=20%  Similarity=0.225  Sum_probs=45.9

Q ss_pred             EEEEEc-cchhHHHHHHHHH-HCCC--eEEEEeCCHHHHHHHHHHhcCcc--c-----ccccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVG-AGGAGRALAFGAK-SRGA--RVIIFNRNYERAKALADAVSGEA--L-----HFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlG-aGg~araia~~L~-~~G~--~v~i~nRt~~ka~~la~~~~~~~--~-----~~~~l~~~~~~~~divInatp~  437 (518)
                      |+.|+| +|.+|.++++.|+ +.+.  ++.+++.. ++++..+-++..-.  .     ...+..+ ...++|+||.|...
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~-~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~-~~~~aDvvvitaG~   79 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGV   79 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS-TTHHHHHHHHHTSCSSCEEEEECSSCCHH-HHTTCSEEEECCSC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc-ccchhHHHHHHCCccccCCcEEEcCCCcc-ccCCCCEEEECCCc
Confidence            689999 5999999999986 4453  89999986 45666655554211  0     0011111 24578999988765


Q ss_pred             CCCC
Q 010101          438 GMEP  441 (518)
Q Consensus       438 g~~~  441 (518)
                      .-.|
T Consensus        80 ~~k~   83 (145)
T d2cmda1          80 RRKP   83 (145)
T ss_dssp             CCCT
T ss_pred             cCCC
Confidence            4344

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.00  E-value=0.034  Score=51.97  Aligned_cols=31  Identities=29%  Similarity=0.480  Sum_probs=29.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      +|+|||+|-+|.++|+.|++.|. +|+|+.|+
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            59999999999999999999997 79999886

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.96  E-value=0.039  Score=52.67  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=30.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA--RVIIFNRNY  400 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~--~v~i~nRt~  400 (518)
                      |+|+|||||.+|.++|++|++.|.  +|+|+.|+.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            789999999999999999988774  899999985

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.90  E-value=0.065  Score=51.26  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=35.1

Q ss_pred             CcEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 010101          367 GKIFVLVGAG---GAGRALAFGAKSRGARVIIFNRNYERAKALA  407 (518)
Q Consensus       367 ~k~vlvlGaG---g~araia~~L~~~G~~v~i~nRt~~ka~~la  407 (518)
                      +|.+||.|+|   |.|++++.+|++.|++|.|..|+........
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~   45 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMK   45 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhH
Confidence            5789999976   8999999999999999999999876554443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=92.76  E-value=0.024  Score=54.17  Aligned_cols=38  Identities=21%  Similarity=0.166  Sum_probs=33.4

Q ss_pred             cCCcEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          365 IAGKIFVLVGAG-GAGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       365 l~~k~vlvlGaG-g~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      ++||+|||.|+. -.|..++..|.+.|++|++++|+..+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            578999999974 59999999999999999999996543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.69  E-value=0.055  Score=44.00  Aligned_cols=33  Identities=21%  Similarity=0.070  Sum_probs=30.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .++++|||+|-+|--+|..|.++|.+|+|+-|+
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            478999999999999999999999999999886

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.66  E-value=0.037  Score=45.12  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=31.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .++++|+|+|-.|--+|..+.++|.+|+|+.|++
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4799999999999999999999999999999854

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.047  Score=51.60  Aligned_cols=69  Identities=13%  Similarity=0.218  Sum_probs=42.6

Q ss_pred             cEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCccccc---ccccccCCCCccEEEEcCCC
Q 010101          368 KIFVLVGAGG-AGRALAFGAKSRGARVIIFNRNY-ERAKALADAVSGEALHF---EYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       368 k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt~-~ka~~la~~~~~~~~~~---~~l~~~~~~~~divInatp~  437 (518)
                      |+|||.|+.| .|+.++..|.+.|++|+.++|.. .+.+.+-........++   +.+.. ...++|+||++...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~d~VihlAa~   75 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP-LYIEVDQIYHLASP   75 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSC-CCCCCSEEEECCSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHH-HHcCCCEEEECccc
Confidence            7899999855 99999999999999999887632 12111111111111111   11222 34578999997643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.53  E-value=0.032  Score=51.71  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      .+|+|+|+|.+|.++|..|++.|.+|.|+.|.++
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3699999999999999999999999999998753

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.12  Score=48.23  Aligned_cols=73  Identities=18%  Similarity=0.236  Sum_probs=42.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCe---EEEEeCCHHHHHH---HHHHhcC---cc----ccccc---c----cccCCC
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGAR---VIIFNRNYERAKA---LADAVSG---EA----LHFEY---L----HEFFPE  426 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~---v~i~nRt~~ka~~---la~~~~~---~~----~~~~~---l----~~~~~~  426 (518)
                      |-|||.|+ +|+|++++..|++.|++   |.+..|+.++.++   .++.+..   ..    +++.+   +    ....-.
T Consensus         3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g   82 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG   82 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred             CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcccc
Confidence            34555676 69999999999999985   4455666554444   4444432   11    11111   1    111124


Q ss_pred             CccEEEEcCCCCCC
Q 010101          427 KGMILANASAIGME  440 (518)
Q Consensus       427 ~~divInatp~g~~  440 (518)
                      ..|++||+...+..
T Consensus        83 ~idilvnnag~~~~   96 (285)
T d1jtva_          83 RVDVLVCNAGLGLL   96 (285)
T ss_dssp             CCSEEEECCCCCCC
T ss_pred             chhhhhhccccccc
Confidence            57999998866543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.30  E-value=0.072  Score=42.82  Aligned_cols=35  Identities=20%  Similarity=0.317  Sum_probs=32.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .+++++|+|+|-+|--+|..|+..|.+|+++.|.+
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            47899999999999999999999999999999864

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=92.17  E-value=0.14  Score=46.40  Aligned_cols=70  Identities=6%  Similarity=0.080  Sum_probs=49.3

Q ss_pred             CcEEEEEccch----hHHHHHHHHHHC--CCeEE-EEeCCHHHHHHHHHHhcCccc----ccccccccCCCCccEEEEcC
Q 010101          367 GKIFVLVGAGG----AGRALAFGAKSR--GARVI-IFNRNYERAKALADAVSGEAL----HFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       367 ~k~vlvlGaGg----~araia~~L~~~--G~~v~-i~nRt~~ka~~la~~~~~~~~----~~~~l~~~~~~~~divInat  435 (518)
                      .-++.|||+|+    +++.-+.++.+.  +++|+ |++|+.++++++++.++....    +++++-.  ..+.|+|+.+|
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~iD~V~i~t   93 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQ--YKDIDMIVVSV   93 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHH--CTTCSEEEECS
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhccc--ccccceeeccC
Confidence            35899999986    555556666654  45655 999999999999999875432    3333321  24679999999


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      |..
T Consensus        94 p~~   96 (237)
T d2nvwa1          94 KVP   96 (237)
T ss_dssp             CHH
T ss_pred             CCc
Confidence            854

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.08  E-value=0.047  Score=48.87  Aligned_cols=33  Identities=27%  Similarity=0.300  Sum_probs=29.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSR--GARVIIFNRNY  400 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~--G~~v~i~nRt~  400 (518)
                      .+|+|||+|.+|.++|..|.+.  |++|+|+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            3799999999999999999765  66999999875

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.03  E-value=0.12  Score=46.60  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=34.2

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      .++++.+++++|||.+|-.++..|.+.|. ++++++|.
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            56889999999999999999999999999 99999985

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.83  E-value=0.045  Score=47.63  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=30.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      ++++|+|||+|.+|..+|..+++.|.+++|+.|.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            4578999999999999999999999999998753

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.79  E-value=0.063  Score=49.35  Aligned_cols=31  Identities=23%  Similarity=0.476  Sum_probs=29.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .|+|||+|-+|.++|+.|++.|.+|+|+.|.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4899999999999999999999999999875

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.77  E-value=0.061  Score=51.37  Aligned_cols=38  Identities=26%  Similarity=0.258  Sum_probs=33.3

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNYERA  403 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~~ka  403 (518)
                      +.|+|+|+|+ |..|++++..|.+.|++|+++.|+.++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence            3689999997 7799999999999999999999986643

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.76  E-value=0.059  Score=50.90  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=31.0

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      +...|+|||||-+|.++++.|.+.|.+++|+.++
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~   39 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETA   39 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcC
Confidence            4567999999999999999999999999999875

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.068  Score=49.94  Aligned_cols=30  Identities=30%  Similarity=0.417  Sum_probs=28.4

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          370 FVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       370 vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      |+|||||-+|.++|+.|++.|.+|+|+.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            799999999999999999999999999865

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.72  E-value=0.078  Score=43.25  Aligned_cols=66  Identities=9%  Similarity=0.069  Sum_probs=47.4

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCccc-----ccccccccCCCCccEEEEcCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEAL-----HFEYLHEFFPEKGMILANASA  436 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~-----~~~~l~~~~~~~~divInatp  436 (518)
                      |+++|+|.|..|+.++..|.  |.+|.++..++++.+.+... +...+     +-+.|....+.+++.+|-+|+
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~-~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRS-GANFVHGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHT-TCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhc-CccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence            46899999999999999884  45788999999998877543 33221     122243435778899997775

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.68  E-value=0.067  Score=48.72  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=33.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYERAKAL  406 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~ka~~l  406 (518)
                      ..|+|||+|.+|..+|+.|++.|.+|.|+.|+..-..++
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~   43 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCce
Confidence            359999999999999999999999999999986554444

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.65  E-value=0.069  Score=48.12  Aligned_cols=33  Identities=27%  Similarity=0.586  Sum_probs=30.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      .|+|||+|.+|.++|..|++.|.+|.|+.++..
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999998643

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.61  E-value=0.12  Score=43.76  Aligned_cols=73  Identities=12%  Similarity=0.073  Sum_probs=47.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCC---------eEEEEeCCHHHHHHHHHHhcCcc------ccc-ccccccCCCCccE
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGA---------RVIIFNRNYERAKALADAVSGEA------LHF-EYLHEFFPEKGMI  430 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~---------~v~i~nRt~~ka~~la~~~~~~~------~~~-~~l~~~~~~~~di  430 (518)
                      -+|.|+|| |..|.++++.|+..+.         ++...+++.++++.++..+....      ... .+..+ ...++|+
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~adv   83 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKV-AFKDADY   83 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHH-HTTTCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhh-hcccccE
Confidence            48999997 9999999999987542         23445667778777776654221      111 11222 4578999


Q ss_pred             EEEcCCCCCCC
Q 010101          431 LANASAIGMEP  441 (518)
Q Consensus       431 vInatp~g~~~  441 (518)
                      ||.+....-.|
T Consensus        84 ViitaG~~~~p   94 (154)
T d1y7ta1          84 ALLVGAAPRKA   94 (154)
T ss_dssp             EEECCCCCCCT
T ss_pred             EEeecCcCCCC
Confidence            99887654443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.57  E-value=0.074  Score=43.49  Aligned_cols=45  Identities=13%  Similarity=0.164  Sum_probs=37.3

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH--------HHHHHHHHHhc
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY--------ERAKALADAVS  411 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~--------~ka~~la~~~~  411 (518)
                      .++++|+|+|-.|--+|..+.++|.+|+|+.|..        +-++.+.+.+.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~   78 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNE   78 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHG
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHH
Confidence            4799999999999999999999999999998853        44555555554

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.04  Score=54.98  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=31.1

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNR  398 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nR  398 (518)
                      +++.+|||+|+||.|-.++..|+..|+ +|+|++.
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~   69 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM   69 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECC
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEEC
Confidence            456789999999999999999999999 9999985

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.50  E-value=0.17  Score=43.09  Aligned_cols=69  Identities=13%  Similarity=0.149  Sum_probs=41.1

Q ss_pred             EEEEEccchhHHHHHHH--HHH---CCC-eEEEEeCCHHHHHHHHHHhcC---ccccc---ccccccCCCCccEEEEcCC
Q 010101          369 IFVLVGAGGAGRALAFG--AKS---RGA-RVIIFNRNYERAKALADAVSG---EALHF---EYLHEFFPEKGMILANASA  436 (518)
Q Consensus       369 ~vlvlGaGg~araia~~--L~~---~G~-~v~i~nRt~~ka~~la~~~~~---~~~~~---~~l~~~~~~~~divInatp  436 (518)
                      |+.|||||..+.+.++.  +..   ... +|.+++.+.++++...+....   .....   .+..+ ...++|+||.|..
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~-~l~~aDvVVita~   80 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEG-AVVDAKYVIFQFR   80 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHH-HHTTCSEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCccc-ccCCCCEEEEecc
Confidence            68999999655555443  222   223 899999999998764432211   11011   11122 3567899998876


Q ss_pred             CC
Q 010101          437 IG  438 (518)
Q Consensus       437 ~g  438 (518)
                      .+
T Consensus        81 ~~   82 (162)
T d1up7a1          81 PG   82 (162)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=91.37  E-value=1.1  Score=39.72  Aligned_cols=143  Identities=16%  Similarity=0.082  Sum_probs=93.5

Q ss_pred             CCHHHHHHHHHHHHhhCCCEEEEEeccCCCCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHHHHHHHHHhhcCC
Q 010101           18 ETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDV   97 (518)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~D~vElRlD~l~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll~~~~~~g~   97 (518)
                      .|.+++....++|.+.+...|=.+..+.     +......+.++. -+.|+=.=..|..   + -+.+..-.+.+++.|+
T Consensus        15 ~T~~~i~~lc~~A~~~~~~aVcV~P~~v-----~~a~~~l~~s~v-~v~~VigFP~G~~---~-~~~k~~e~~~ai~~GA   84 (211)
T d1ub3a_          15 ATLEEVAKAAEEALEYGFYGLCIPPSYV-----AWVRARYPHAPF-RLVTVVGFPLGYQ---E-KEVKALEAALACARGA   84 (211)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEECCGGGH-----HHHHHHCTTCSS-EEEEEESTTTCCS---C-HHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCCeEEEECHHHH-----HHHHHHccCCCC-ceEEEEecccccC---c-HHHHHHHHHHHHHcCC
Confidence            4677777777888888777763222211     233344443443 3455544444432   2 5677888899999999


Q ss_pred             cEEEEecCCC-------C---chhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEc----cc
Q 010101           98 EFVEMDYEVA-------S---DPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEI----AV  162 (518)
Q Consensus        98 ~yvDiEl~~~-------~---~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~----~~  162 (518)
                      +-||+=++..       +   +.+..+.+ .+....|+|+-.+.+     +.+++....+-+.+.|+|.+|--+    ..
T Consensus        85 ~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L-----~~~ei~~a~~~a~~aGadfiKTSTG~~~~g  159 (211)
T d1ub3a_          85 DEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYF-----SPEEIARLAEAAIRGGADFLKTSTGFGPRG  159 (211)
T ss_dssp             SEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGS-----CHHHHHHHHHHHHHHTCSEEECCCSSSSCC
T ss_pred             CeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccC-----CHHHHHHHHHHHHHhccceEEecCCCCCCC
Confidence            9999987653       1   11233333 233456999987777     778999999999999999999854    23


Q ss_pred             CCcccHHHHHHHh
Q 010101          163 DSITDLAPVFEML  175 (518)
Q Consensus       163 ~~~~D~~~l~~~~  175 (518)
                      -+++|+..+.+..
T Consensus       160 at~e~v~~m~~~~  172 (211)
T d1ub3a_         160 ASLEDVALLVRVA  172 (211)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            4788887666654

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.30  E-value=0.53  Score=42.41  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=59.8

Q ss_pred             HHHHHhhCCCEEEEEeccCC-CCcHHHHHHHhcCCCCcEEEEe--ecCCCCCCCCCCcHHHHHHHHHHHhhcCCcEEEEe
Q 010101           27 IEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPAIVSY--RLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMD  103 (518)
Q Consensus        27 ~~~~~~~g~D~vElRlD~l~-~~~~~~l~~l~~~~~~PiI~T~--R~~~eGG~~~~~~~~~~~~ll~~~~~~g~~yvDiE  103 (518)
                      ++.+.+.|+|.||+|-+++. ....+.++.+.+..++++....  ....+.+..    .+...+.+..+..+|+.+|-+.
T Consensus        25 l~~~a~~G~dgIEi~~~~~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~~~~~~----~~~~~~~i~~A~~LG~~~v~~~  100 (250)
T d1yx1a1          25 LPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQL----NPELEPTLRRAEACGAGWLKVS  100 (250)
T ss_dssp             HHHHHHHTCSEEEEEGGGCSSCCCHHHHHHHHHHTTCEEEEEEEEEEECTTSSB----CTTHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHhCCCEEEEecccCCCcchHHHHHHHHHHcCCEEEEecccccccCchhh----HHHHHHHHHHHHHhCCCEEEEe
Confidence            44555689999999998877 3333467777777888875432  111222221    3445667888889999998776


Q ss_pred             cCCCC--chhhHHHh-hcCCCcEEEEeee
Q 010101          104 YEVAS--DPLMSEII-YSRSNTKIIVSSY  129 (518)
Q Consensus       104 l~~~~--~~~~~l~~-~~~~~~kiI~S~H  129 (518)
                      .....  +.++.+.. +++.+.++.+=.|
T Consensus       101 ~g~~~~~~~l~~l~~~a~~~Gv~l~iE~h  129 (250)
T d1yx1a1         101 LGLLPEQPDLAALGRRLARHGLQLLVEND  129 (250)
T ss_dssp             EECCCSSCCHHHHHHHHTTSSCEEEEECC
T ss_pred             ecccchhHHHHHHHHHHHHcCCEEEEEeC
Confidence            54432  33455544 4444444444333

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.28  E-value=0.063  Score=50.50  Aligned_cols=31  Identities=23%  Similarity=0.411  Sum_probs=29.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .++|||||-+|.++|+.|++.|.+|+|+.++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~   33 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKR   33 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECC
Confidence            5899999999999999999999999999886

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.23  E-value=0.064  Score=42.45  Aligned_cols=37  Identities=14%  Similarity=0.126  Sum_probs=30.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      ..++||+|+|+|+|-+|.-++..|+..+.++++..|.
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            4588999999999999999999998877666655554

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.72  E-value=0.07  Score=46.54  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=29.3

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNR  398 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nR  398 (518)
                      ++++|+|||+|.+|..+|..|++.|.++.|+.+
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEe
Confidence            357999999999999999999999998888864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.66  E-value=0.094  Score=48.38  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=30.4

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .+||||+|+ |-.|+.++.+|.+.|.+|+++.|+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            467999997 7799999999999999999999964

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.55  E-value=0.17  Score=43.55  Aligned_cols=71  Identities=6%  Similarity=-0.072  Sum_probs=41.5

Q ss_pred             cEEEEEccc--hhHHHHHHHHHHC---CC-eEEEEeCCHHH--HHHHHH-------HhcCcc--cccccccccCCCCccE
Q 010101          368 KIFVLVGAG--GAGRALAFGAKSR---GA-RVIIFNRNYER--AKALAD-------AVSGEA--LHFEYLHEFFPEKGMI  430 (518)
Q Consensus       368 k~vlvlGaG--g~araia~~L~~~---G~-~v~i~nRt~~k--a~~la~-------~~~~~~--~~~~~l~~~~~~~~di  430 (518)
                      .|+.|||||  |.+.+++.-+...   .. +|+++++++++  ++.+-.       .++...  ....+..+ .+.++|+
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~-al~gaDv   80 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRR-ALDGADF   80 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHH-HHTTCSE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchh-hcCCCCE
Confidence            379999999  5555555555432   23 89999998754  443321       111111  11122222 3567999


Q ss_pred             EEEcCCCCC
Q 010101          431 LANASAIGM  439 (518)
Q Consensus       431 vInatp~g~  439 (518)
                      ||+|..++-
T Consensus        81 Vv~ta~~~~   89 (169)
T d1s6ya1          81 VTTQFRVGG   89 (169)
T ss_dssp             EEECCCTTH
T ss_pred             EEEccccCC
Confidence            999987764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.47  E-value=0.1  Score=47.65  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=30.7

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .|||||+|| |..|++++.+|.+.|.+|+++.|+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            578999998 7799999999999999999999964

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.38  E-value=0.12  Score=45.85  Aligned_cols=37  Identities=19%  Similarity=0.431  Sum_probs=32.8

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      ..++||+|+|||+|-+|--+++.+++.+.+++.+-|+
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            4578999999999999999999999998877777765

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.35  E-value=0.16  Score=40.62  Aligned_cols=36  Identities=28%  Similarity=0.496  Sum_probs=32.5

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      .+.++.|||+|--||-++.+..++|+++.+++.+++
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            356899999999999999999999999999998754

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=90.31  E-value=0.13  Score=45.92  Aligned_cols=72  Identities=19%  Similarity=0.036  Sum_probs=51.7

Q ss_pred             cCC-cEEEEEccchhHHHHHHHHHH------CCCeEEEEeCCHHHHHHHHHHhcCcccc--cccccccCCCCccEEEEcC
Q 010101          365 IAG-KIFVLVGAGGAGRALAFGAKS------RGARVIIFNRNYERAKALADAVSGEALH--FEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       365 l~~-k~vlvlGaGg~araia~~L~~------~G~~v~i~nRt~~ka~~la~~~~~~~~~--~~~l~~~~~~~~divInat  435 (518)
                      ++| |++.|||.|-=|+|=|..|.+      .|++|.|--|..++..+.|+.-|.+...  +-+..+ ...++|+|+..+
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~E-Av~~ADiVmiLl  119 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWE-TISGSDLVLLLI  119 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHH-HHHTCSEEEECS
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHH-HHhhCCEEEEec
Confidence            456 899999999999999999998      4567888888766666666666644221  112222 345689999988


Q ss_pred             CC
Q 010101          436 AI  437 (518)
Q Consensus       436 p~  437 (518)
                      |-
T Consensus       120 PD  121 (226)
T d1qmga2         120 SD  121 (226)
T ss_dssp             CH
T ss_pred             ch
Confidence            84

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.11  E-value=0.2  Score=42.30  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=30.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNRN  399 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nRt  399 (518)
                      -+++|+|||+|-+|--.|..+.++|+ +|+++-|.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            46789999999999999999999999 79888874

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.95  E-value=0.09  Score=44.85  Aligned_cols=31  Identities=35%  Similarity=0.426  Sum_probs=26.7

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEe
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFN  397 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~n  397 (518)
                      +++|+|||+|.+|-.++..|.++|.+++|+-
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence            6799999999999999999999998554443

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.57  E-value=0.2  Score=45.03  Aligned_cols=38  Identities=18%  Similarity=0.170  Sum_probs=32.9

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHHH--------------------CCC-eEEEEeCCH
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAKS--------------------RGA-RVIIFNRNY  400 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~~--------------------~G~-~v~i~nRt~  400 (518)
                      ..+.+++|+|||.|-+|.-+|..|.+                    .|+ +|+++.|..
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            45679999999999999999988876                    588 999999863

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.57  E-value=2.4  Score=38.38  Aligned_cols=142  Identities=12%  Similarity=0.033  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHhhCCCEEEEEeccCCCCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHHHHHHHHHhhcCC
Q 010101           18 ETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDV   97 (518)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~D~vElRlD~l~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll~~~~~~g~   97 (518)
                      .|.+++....++|...|..+|=.+.-+     .+......+.++..+ .|+=.=..|-.    .-+.+..-.+.+++.|+
T Consensus        48 ~t~e~i~~lc~~A~~~~~aaVcV~P~~-----v~~a~~~L~gs~v~v-~tVigFP~G~~----~~~~K~~Ea~~Ai~~GA  117 (251)
T d1o0ya_          48 ATPDDIKKLCLEARENRFHGVCVNPCY-----VKLAREELEGTDVKV-VTVVGFPLGAN----ETRTKAHEAIFAVESGA  117 (251)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEECGGG-----HHHHHHHHTTSCCEE-EEEESTTTCCS----CHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHhhcCceEEEECHHH-----HHHHHHHhcCCCceE-EeeccCCCCCC----cHHHHHHHHHHHHHcCC
Confidence            457777777788887877776333221     123444445556554 45533233321    25677777899999999


Q ss_pred             cEEEEecCCCC----------chhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEc----cc
Q 010101           98 EFVEMDYEVAS----------DPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEI----AV  162 (518)
Q Consensus        98 ~yvDiEl~~~~----------~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~----~~  162 (518)
                      +-||+=++...          +.++.+.+ .+..-.|+|+-...+     +.+++....+-+...|||.+|-.+    ..
T Consensus       118 dEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L-----~~~e~~~a~~ia~~aGadfvKTSTGf~~~g  192 (251)
T d1o0ya_         118 DEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYL-----DTEEKIAACVISKLAGAHFVKTSTGFGTGG  192 (251)
T ss_dssp             SEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGC-----CHHHHHHHHHHHHHTTCSEEECCCSSSSCC
T ss_pred             ceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeeccccc-----CcHHHHHHHHHHHHhCcceeeccCCCCCCC
Confidence            99999876531          12333333 344678899876665     778898888999999999999854    23


Q ss_pred             CCcccHHHHHHH
Q 010101          163 DSITDLAPVFEM  174 (518)
Q Consensus       163 ~~~~D~~~l~~~  174 (518)
                      .+++|+..+.+.
T Consensus       193 at~e~V~~m~~~  204 (251)
T d1o0ya_         193 ATAEDVHLMKWI  204 (251)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            467777555544

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.50  E-value=0.21  Score=44.53  Aligned_cols=37  Identities=27%  Similarity=0.409  Sum_probs=31.5

Q ss_pred             cccCCcEEEEEccchhHHHHHHHHH--------------------HCCC-eEEEEeCC
Q 010101          363 SPIAGKIFVLVGAGGAGRALAFGAK--------------------SRGA-RVIIFNRN  399 (518)
Q Consensus       363 ~~l~~k~vlvlGaGg~araia~~L~--------------------~~G~-~v~i~nRt  399 (518)
                      ..+.+++|+|||.|-+|.-+|..|.                    +.|+ +|+++.|.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            4467899999999999999887766                    6788 99999985

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=89.46  E-value=0.13  Score=47.80  Aligned_cols=32  Identities=41%  Similarity=0.665  Sum_probs=29.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      -.|+|||+|.+|.++|..|++.|.+|.|+.+.
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            36999999999999999999999999999875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.42  E-value=0.15  Score=44.92  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=29.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .++|||+|.+|.++|..++++|.+|.|+.+.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4899999999999999999999999999885

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.38  E-value=1.1  Score=40.47  Aligned_cols=79  Identities=15%  Similarity=0.077  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHHHHHhhCCCEEEEEeccCC---CC--cHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcH---HHHHHH
Q 010101           17 CETTEEMQASIEQAKVEGADLVELCIDSME---FS--HISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACK---NTCLQV   88 (518)
Q Consensus        17 ~~~~~~~~~~~~~~~~~g~D~vElRlD~l~---~~--~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~---~~~~~l   88 (518)
                      .-++++.++.+   .+.|.|.||||.|...   .+  ..++++.+.+..+++++--.-    ++.+....+   +.-.++
T Consensus        17 ~l~lee~l~~a---~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~~l~~----~~~~~~~~~~~~~~~~~~   89 (271)
T d2q02a1          17 GLSIEAFFRLV---KRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINA----VYPFNQLTEEVVKKTEGL   89 (271)
T ss_dssp             TSCHHHHHHHH---HHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEE----ETTTTSCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHH---HHhCCCEEEEecCcccccccccCCHHHHHHHHHHcCCcEEEeec----ccccCCCCHHHHHHHHHH
Confidence            45667666554   4579999999988764   12  245677777777777642211    122332212   223444


Q ss_pred             HHHHhhcCCcEEEE
Q 010101           89 LRRALDLDVEFVEM  102 (518)
Q Consensus        89 l~~~~~~g~~yvDi  102 (518)
                      ++.+.++|+..|=+
T Consensus        90 i~~a~~lG~~~v~~  103 (271)
T d2q02a1          90 LRDAQGVGARALVL  103 (271)
T ss_dssp             HHHHHHHTCSEEEE
T ss_pred             HHHHHHcCCcEEEE
Confidence            56666677766644

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.18  E-value=1.1  Score=40.95  Aligned_cols=146  Identities=15%  Similarity=0.169  Sum_probs=91.7

Q ss_pred             CCHHHHHHHHHHHHhhCCCEEEEEeccCC-----CCcHHHHHHHh---c-CCCCcEEEEeecCCCCCCCCCCcHHHHHHH
Q 010101           18 ETTEEMQASIEQAKVEGADLVELCIDSME-----FSHISEVDKLI---Q-HPTLPAIVSYRLKSSRKSSDEACKNTCLQV   88 (518)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~D~vElRlD~l~-----~~~~~~l~~l~---~-~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l   88 (518)
                      .+.++++..++..++.|||+|.+=-=.-.     -++.+++.++.   + ..+..+++.+=             ..+.+.
T Consensus        23 ~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~~iSID-------------T~~~eV   89 (264)
T d1ad1a_          23 NNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDVKISVD-------------TFRSEV   89 (264)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEE-------------CSCHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCcccchh-------------hhhHHH
Confidence            47788999999989999999977543332     13344555433   1 12334455553             345568


Q ss_pred             HHHHhhcCCcEEE-Ee-cCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCC----hh----HHHHHHHHHHHcCCCEEEE
Q 010101           89 LRRALDLDVEFVE-MD-YEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPT----TE----KLGDVIACMQATGADVMKL  158 (518)
Q Consensus        89 l~~~~~~g~~yvD-iE-l~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~----~~----~l~~~~~~~~~~gadivKi  158 (518)
                      .+.|++.|+++|- |- ....++.++ +..  ..+..+|+-|+   .++|.    ..    .+.+.++.+...|.+--+|
T Consensus        90 a~~al~~Ga~iINDVs~g~~d~~~~~-~va--~~~~~~ilmH~---~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~I  163 (264)
T d1ad1a_          90 AEACLKLGVDIINDQWAGLYDHRMFQ-VVA--KYDAEIVLMHN---GNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKI  163 (264)
T ss_dssp             HHHHHHTTCCEEEETTTTSSCTHHHH-HHH--HTTCEEEEECC---CCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred             HHHHHhcCCcEeeccccccccccHHH-HHh--hcCcceeeeee---ccccccCccchhhhhHHHHHHHHHHhhccccceE
Confidence            8899999999985 53 333444443 322  35678888654   34442    22    3455566678888665677


Q ss_pred             Ec-----ccCCcccHHHHHHHhc---cCCCCE
Q 010101          159 EI-----AVDSITDLAPVFEMLT---HCQVPL  182 (518)
Q Consensus       159 a~-----~~~~~~D~~~l~~~~~---~~~~p~  182 (518)
                      +.     ..++.++++.|++-++   ..+.|+
T Consensus       164 ilDPGiGFgKt~~~n~~ll~~l~~~~~~g~Pi  195 (264)
T d1ad1a_         164 WLDPGIGFAKTRNEEAEVMARLDELVATEYPV  195 (264)
T ss_dssp             EEECCTTSSCCHHHHHHHHHCHHHHHTTCSCB
T ss_pred             EeccCcCccccchhHHHHHHHHHHhhccCCce
Confidence            65     6678999999988543   336674

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.18  E-value=0.13  Score=45.19  Aligned_cols=31  Identities=23%  Similarity=0.371  Sum_probs=28.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .++|||+|.+|.++|..++++|.+|.|+.+.
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            4899999999999999999999999999865

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.88  E-value=0.18  Score=44.54  Aligned_cols=31  Identities=26%  Similarity=0.354  Sum_probs=28.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .|+|||+|.+|.++|..++++|.+|.|+.+.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~   37 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKR   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            5899999999999999999999999999864

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=88.78  E-value=3.7  Score=36.89  Aligned_cols=123  Identities=17%  Similarity=0.184  Sum_probs=77.6

Q ss_pred             HHHHHhhCCCEEEEEeccCCCCcHHHHH---HHhc---CCCCcEEEEeecCCCCCCCCCCcHHHHHHHHHHHhhcCCcEE
Q 010101           27 IEQAKVEGADLVELCIDSMEFSHISEVD---KLIQ---HPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFV  100 (518)
Q Consensus        27 ~~~~~~~g~D~vElRlD~l~~~~~~~l~---~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll~~~~~~g~~yv  100 (518)
                      +++++..|+|+|=+.+.+-.....+.+.   ++.+   ..++|+++-.-+...+-..+.+ .+.-....+.+.++|+|.|
T Consensus        96 ve~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~-~~~v~~aaria~ElGaDiv  174 (251)
T d1ojxa_          96 VEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETA-PEIVAYAARIALELGADAM  174 (251)
T ss_dssp             HHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTC-HHHHHHHHHHHHHHTCSEE
T ss_pred             HHHHHhchhceEEEEEeCCCCchHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCC-HHHHHHHHHHHHHhCCCEE
Confidence            3455678999999999655433333333   3333   3589999887554322222333 4444455777889999999


Q ss_pred             EEecCCCCchhhHHHhhcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCC
Q 010101          101 EMDYEVASDPLMSEIIYSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGAD  154 (518)
Q Consensus       101 DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gad  154 (518)
                      =+++-.+.+.+.++... .....++++-   +.+.-+++++.+..+.+.+.||-
T Consensus       175 K~~~p~~~~~~~~~v~~-a~~~pv~~~g---G~~~~~~~~~l~~~~~a~~~Ga~  224 (251)
T d1ojxa_         175 KIKYTGDPKTFSWAVKV-AGKVPVLMSG---GPKTKTEEDFLKQVEGVLEAGAL  224 (251)
T ss_dssp             EECCCSSHHHHHHHHHH-TTTSCEEEEC---CSCCSSHHHHHHHHHHHHHTTCC
T ss_pred             EecCCCcHHHHHHHHHh-cCCCceEEeC---CCCCCCHHHHHHHHHHHHHCCCc
Confidence            99988776555555432 2345566651   23334677888888888888874

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.47  E-value=0.2  Score=44.58  Aligned_cols=32  Identities=34%  Similarity=0.525  Sum_probs=29.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .++|||+|.+|.+++..+++.|.+|.|+.+..
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999998754

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.21  E-value=0.19  Score=40.33  Aligned_cols=106  Identities=22%  Similarity=0.234  Sum_probs=65.8

Q ss_pred             cEEEEEccc----hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCc-ccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          368 KIFVLVGAG----GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGE-ALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       368 k~vlvlGaG----g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~-~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      |++.|+|+.    -.|..+...|.+.|++|+-+|.+.+..      +|.. +-++.++    ....|+++-++|....+.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i------~G~~~y~sl~~l----p~~~D~vvi~vp~~~~~~   71 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------EGLKCYRSVREL----PKDVDVIVFVVPPKVGLQ   71 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------TTEECBSSGGGS----CTTCCEEEECSCHHHHHH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc------cCccccccchhc----cccceEEEEEeCHHHHHH
Confidence            689999975    478899999999999999999764321      1211 1234443    345799998887643221


Q ss_pred             CCCCCCChhhhcC--CCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHH
Q 010101          443 SDQSPVPKEALKA--YELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFI  490 (518)
Q Consensus       443 ~~~~~~~~~~l~~--~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~  490 (518)
                           +-.++...  ..+.+  .-.-....+.+.|++.|.+++.+-=|++
T Consensus        72 -----~l~~~~~~g~k~v~~--~~g~~~~~~~~~a~~~gi~vigpnC~~v  114 (116)
T d1y81a1          72 -----VAKEAVEAGFKKLWF--QPGAESEEIRRFLEKAGVEYSFGRCIMV  114 (116)
T ss_dssp             -----HHHHHHHTTCCEEEE--CTTSCCHHHHHHHHHHTCEEECSCCHHH
T ss_pred             -----HHHHHHhcCCceEEe--ccchhhHHHHHHHHHcCCEEEcCCCCCE
Confidence                 11122221  12222  1123356788999999999887755554

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.13  E-value=0.3  Score=43.25  Aligned_cols=121  Identities=17%  Similarity=0.155  Sum_probs=71.6

Q ss_pred             cccCCceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCCCCcHHHHHHHhcCCCCcEEE---EeecCCCCCCCCCC
Q 010101            4 AAKNSLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSMEFSHISEVDKLIQHPTLPAIV---SYRLKSSRKSSDEA   80 (518)
Q Consensus         4 ~~~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~~~~~~~l~~l~~~~~~PiI~---T~R~~~eGG~~~~~   80 (518)
                      +-++.+.| ..|+..+.+++...++.+...|..++|+.+..  ++..+.+..++....--+++   |+.+          
T Consensus         5 ~l~~~~ii-pvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~--p~a~~~i~~l~~~~~~~~~vGaGTV~~----------   71 (202)
T d1wa3a1           5 LFKKHKIV-AVLRANSVEEAKEKALAVFEGGVHLIEITFTV--PDADTVIKELSFLKEKGAIIGAGTVTS----------   71 (202)
T ss_dssp             HHHHHCEE-EEECCSSHHHHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHTHHHHHTTCEEEEESCCS----------
T ss_pred             HHHhCCEE-EEEECCCHHHHHHHHHHHHHcCCCEEEEecCC--ccHHHHHHHHHHhcCCCcEEEeccccc----------
Confidence            33444544 55899999999999988888999999998752  23334555554321112333   3332          


Q ss_pred             cHHHHHHHHHHHhhcCCcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEE
Q 010101           81 CKNTCLQVLRRALDLDVEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKL  158 (518)
Q Consensus        81 ~~~~~~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKi  158 (518)
                       .    +-++.+.+.|++|+ |   +| -+-.++.+ .++.+..+|-.     -.||+  |+    .++.++|+|++|+
T Consensus        72 -~----~~~~~a~~aGa~fi-v---sP-~~~~~v~~~~~~~~i~~iPG-----v~Tps--Ei----~~A~~~G~~~lK~  129 (202)
T d1wa3a1          72 -V----EQCRKAVESGAEFI-V---SP-HLDEEISQFCKEKGVFYMPG-----VMTPT--EL----VKAMKLGHTILKL  129 (202)
T ss_dssp             -H----HHHHHHHHHTCSEE-E---CS-SCCHHHHHHHHHHTCEEECE-----ECSHH--HH----HHHHHTTCCEEEE
T ss_pred             -H----HHHHHHHhhcccEE-e---CC-CCcHHHHHHHHhcCCceeCC-----cCcHH--HH----HHHHHCCCCEEEe
Confidence             2    23566788999987 2   22 12233433 33345555543     22443  33    3445799999997

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=87.96  E-value=5.7  Score=35.58  Aligned_cols=145  Identities=15%  Similarity=0.051  Sum_probs=87.5

Q ss_pred             HHHHhhCCCEEEEEeccCC----CCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHH---HHHHHHHHhhcCCcEE
Q 010101           28 EQAKVEGADLVELCIDSME----FSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNT---CLQVLRRALDLDVEFV  100 (518)
Q Consensus        28 ~~~~~~g~D~vElRlD~l~----~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~---~~~ll~~~~~~g~~yv  100 (518)
                      ..|...|||-|||+-++-.    ++.. .+..+++..++|+-+=+|++  ||-|--+ +++   ..+-++.+.++|++.|
T Consensus        14 ~~A~~~GAdRIELc~~l~~GGlTPS~g-~i~~~~~~~~iPv~vMIRPR--~GdF~Ys-~~E~~~M~~di~~~k~~G~dGv   89 (247)
T d1twda_          14 LTAQQNGADRVELCAAPKEGGLTPSLG-VLKSVRQRVTIPVHPIIRPR--GGDFCYS-DGEFAAILEDVRTVRELGFPGL   89 (247)
T ss_dssp             HHHHHTTCSEEEECBCGGGTCBCCCHH-HHHHHHHHCCSCEEEBCCSS--SSCSCCC-HHHHHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHcCCCEEEEcCCcccCCCCCCHH-HHHHHHHhcCCCeEEEEecC--CCCCCCC-HHHHHHHHHHHHHHHHcCCCeE
Confidence            4556789999999977654    4543 56777777899999999964  5555555 444   4444666678888876


Q ss_pred             EEecCC-----CCchhhHHHhhcCCCcEEEEeee-cCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccCCcccHHHHHH-
Q 010101          101 EMDYEV-----ASDPLMSEIIYSRSNTKIIVSSY-LNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFE-  173 (518)
Q Consensus       101 DiEl~~-----~~~~~~~l~~~~~~~~kiI~S~H-~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~-  173 (518)
                      =+=.-.     +.+..++|.+.- .+.+  +.+| -| +.+++   ..+-++.+.++|.+=+==..-+.+..|...+++ 
T Consensus        90 V~G~L~~dg~iD~~~~~~L~~~a-~~l~--vTFHRAf-D~~~d---~~~al~~Li~lG~~rILTSGg~~~a~~G~~~L~~  162 (247)
T d1twda_          90 VTGVLDVDGNVDMPRMEKIMAAA-GPLA--VTFHRAF-DMCAN---PLYTLNNLAELGIARVLTSGQKSDALQGLSKIME  162 (247)
T ss_dssp             EECCBCTTSSBCHHHHHHHHHHH-TTSE--EEECGGG-GGCSC---HHHHHHHHHHHTCCEEEECTTSSSTTTTHHHHHH
T ss_pred             EEEEECCCCCccHHHHHHHHHHh-cccC--eeeehhh-hhhCC---HHHHHHHHHhcCCCeEeccCCCCchhHHHHHHHH
Confidence            554322     235566676621 3444  3456 45 56665   555567777778554433344455556554444 


Q ss_pred             HhccCCCCEE
Q 010101          174 MLTHCQVPLI  183 (518)
Q Consensus       174 ~~~~~~~p~i  183 (518)
                      +.+..+.++|
T Consensus       163 L~~~a~~~iI  172 (247)
T d1twda_         163 LIAHRDAPII  172 (247)
T ss_dssp             HHTSSSCCEE
T ss_pred             HHHhcCCcEE
Confidence            4444444443

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=87.87  E-value=0.63  Score=39.98  Aligned_cols=71  Identities=15%  Similarity=-0.019  Sum_probs=45.4

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHC---CC----eEEEEeCCH--HHHHHHHHHhcCcc-------cccccccccCCCCcc
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSR---GA----RVIIFNRNY--ERAKALADAVSGEA-------LHFEYLHEFFPEKGM  429 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~---G~----~v~i~nRt~--~ka~~la~~~~~~~-------~~~~~l~~~~~~~~d  429 (518)
                      .-+|.|+|| |..|.++++.|+..   |.    .+.+++...  ++++.++-++....       ....+..+ ...++|
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~-~~~~aD  102 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYE-VFEDVD  102 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHH-HTTTCS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchh-hccCCc
Confidence            357999997 89999999999863   32    577777654  45666665543211       11122222 357789


Q ss_pred             EEEEcCCCC
Q 010101          430 ILANASAIG  438 (518)
Q Consensus       430 ivInatp~g  438 (518)
                      +||-+....
T Consensus       103 vVvi~ag~~  111 (175)
T d7mdha1         103 WALLIGAKP  111 (175)
T ss_dssp             EEEECCCCC
T ss_pred             eEEEeeccC
Confidence            999776443

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.81  E-value=0.36  Score=40.55  Aligned_cols=73  Identities=7%  Similarity=0.003  Sum_probs=45.6

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCC-------eEEEEeC--CHHHHHHHHHHhcCcc------ccc-ccccccCCCCccE
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGA-------RVIIFNR--NYERAKALADAVSGEA------LHF-EYLHEFFPEKGMI  430 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~-------~v~i~nR--t~~ka~~la~~~~~~~------~~~-~~l~~~~~~~~di  430 (518)
                      -+|.|+|| |..|.++++.|+..+.       .+.+++.  +.++++.++.++....      ... .+..+ ...++|+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dv   82 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEI-AFKDLDV   82 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHH-HTTTCSE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCccccc-ccCCceE
Confidence            48999996 9999999999986432       4777765  4456666654432110      111 11122 4567899


Q ss_pred             EEEcCCCCCCC
Q 010101          431 LANASAIGMEP  441 (518)
Q Consensus       431 vInatp~g~~~  441 (518)
                      ||-+......|
T Consensus        83 VVitag~~~~~   93 (154)
T d5mdha1          83 AILVGSMPRRD   93 (154)
T ss_dssp             EEECCSCCCCT
T ss_pred             EEEecccCCCC
Confidence            99877654444

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.80  E-value=0.16  Score=37.92  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=30.9

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRNYE  401 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~~  401 (518)
                      |++.|+|+|--||-++.+...+|+++.+++.+.+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            6899999999999999999999999999997643

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.75  E-value=0.16  Score=44.67  Aligned_cols=34  Identities=32%  Similarity=0.273  Sum_probs=29.3

Q ss_pred             CcEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCH
Q 010101          367 GKIFVLVGA-GGAGRALAFGAKSRGA--RVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGa-Gg~araia~~L~~~G~--~v~i~nRt~  400 (518)
                      .|++||+|| |-.|+.++..|.+.|.  +|...+|++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            389999999 7799999999999996  677777764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.74  E-value=0.22  Score=42.26  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=28.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .|+|||+|.+|-.+|..+++.|.++.|+.|.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4899999999999999999999999999863

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.63  E-value=0.26  Score=45.80  Aligned_cols=33  Identities=24%  Similarity=0.193  Sum_probs=29.3

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      |+|||.|+ |-.|+.++..|.+.|++|+.++|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            68999998 5599999999999999999998853

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.62  E-value=0.039  Score=49.24  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=25.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC------eEEEEeC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA------RVIIFNR  398 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~------~v~i~nR  398 (518)
                      +|+|||||-+|.++|+.|++.|.      +++++.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            69999999999999999999885      4666664

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.61  E-value=0.24  Score=43.27  Aligned_cols=32  Identities=31%  Similarity=0.447  Sum_probs=29.1

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      ..++|||+|.+|..+|..+++.|.+|.|+.+.
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            35899999999999999999999999999875

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=87.59  E-value=0.2  Score=47.08  Aligned_cols=32  Identities=41%  Similarity=0.739  Sum_probs=29.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      ..|+|||+|.+|.++|..|++.|.+|.|+.+.
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            35999999999999999999999999999875

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=0.36  Score=38.93  Aligned_cols=36  Identities=19%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             CcEEEEEccch-----------hHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          367 GKIFVLVGAGG-----------AGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       367 ~k~vlvlGaGg-----------~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      .+++||||+|+           ++-.++.+|.+.|+++.++|-+++.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            57999999983           5667788999999999999988765

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.52  E-value=0.65  Score=40.15  Aligned_cols=75  Identities=16%  Similarity=0.160  Sum_probs=51.4

Q ss_pred             ccCCcEEEEEccc--hhHHHHHHHHHHCCCeEEEEeCCH--------HHHHHHHHHhcCcccccccccccCCCCccEEEE
Q 010101          364 PIAGKIFVLVGAG--GAGRALAFGAKSRGARVIIFNRNY--------ERAKALADAVSGEALHFEYLHEFFPEKGMILAN  433 (518)
Q Consensus       364 ~l~~k~vlvlGaG--g~araia~~L~~~G~~v~i~nRt~--------~ka~~la~~~~~~~~~~~~l~~~~~~~~divIn  433 (518)
                      +++|.+++++|-|  .++++.+..+...|++++++.-..        +.+++++...+....-.+++.+ ...++|+|.-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e-ai~~aDvVyt   80 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKE-AVKGVDFVHT   80 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHH-HTTTCSEEEE
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhh-ccccccEEEe
Confidence            3678899999965  799999999999999999998631        2344444444433322234444 5678999886


Q ss_pred             cCCCCC
Q 010101          434 ASAIGM  439 (518)
Q Consensus       434 atp~g~  439 (518)
                      .+-..|
T Consensus        81 ~~w~~~   86 (185)
T d1dxha2          81 DVWVSM   86 (185)
T ss_dssp             CCCSCS
T ss_pred             ehhhhh
Confidence            554444

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.45  E-value=0.25  Score=46.29  Aligned_cols=33  Identities=36%  Similarity=0.580  Sum_probs=30.1

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      ...|+|||+|.+|.++|..+++.|.+|.|+.+.
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            456999999999999999999999999999874

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.43  E-value=0.21  Score=45.98  Aligned_cols=35  Identities=31%  Similarity=0.442  Sum_probs=30.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHH-CCCeEEEEeCCH
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKS-RGARVIIFNRNY  400 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~-~G~~v~i~nRt~  400 (518)
                      ....|+|||+|.+|.++|+.|++ .|.+|+|+.+.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            35679999999999999999987 599999999864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.31  E-value=0.19  Score=44.31  Aligned_cols=32  Identities=19%  Similarity=0.404  Sum_probs=29.7

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      ..++|||+|.+|..+|..++++|.+|+|+.+.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            46899999999999999999999999999875

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=87.28  E-value=0.21  Score=46.92  Aligned_cols=31  Identities=23%  Similarity=0.352  Sum_probs=28.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .|+|||+|.+|.++|..+++.|.+|.|+...
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            4999999999999999999999999999764

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.05  E-value=0.22  Score=48.35  Aligned_cols=32  Identities=34%  Similarity=0.424  Sum_probs=29.3

Q ss_pred             EEEEEccchhHHHHHHHHHH------CCCeEEEEeCCH
Q 010101          369 IFVLVGAGGAGRALAFGAKS------RGARVIIFNRNY  400 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~------~G~~v~i~nRt~  400 (518)
                      .|+|||+|.+|.++|+.|++      .|.+|.|+.|..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            69999999999999999997      788999999864

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.05  E-value=0.22  Score=43.58  Aligned_cols=31  Identities=19%  Similarity=0.397  Sum_probs=28.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      .++|||+|.+|..+|..+++.|.+|.|+.+.
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4899999999999999999999999999863

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=86.79  E-value=0.67  Score=44.01  Aligned_cols=33  Identities=27%  Similarity=0.282  Sum_probs=28.5

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      |.|||.|+ |-.|+.++..|.+.|.+|+.++|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            78999996 5599999999999999999999943

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.55  E-value=0.22  Score=44.24  Aligned_cols=30  Identities=23%  Similarity=0.412  Sum_probs=28.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNR  398 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nR  398 (518)
                      .++|||+|.+|.++|..++++|.+|.|+.+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~   34 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDF   34 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            589999999999999999999999999984

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.54  E-value=1.3  Score=37.19  Aligned_cols=73  Identities=19%  Similarity=0.205  Sum_probs=46.2

Q ss_pred             cCCcEEEEEccch-hHHHHHHHHHHCCCeEEEEeCC----HHH----HHHHHHHhcCcccccccccccCCCCccEEEEcC
Q 010101          365 IAGKIFVLVGAGG-AGRALAFGAKSRGARVIIFNRN----YER----AKALADAVSGEALHFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       365 l~~k~vlvlGaGg-~araia~~L~~~G~~v~i~nRt----~~k----a~~la~~~~~~~~~~~~l~~~~~~~~divInat  435 (518)
                      ++|++++++|-|. ++++.+.+|...|++++++.-.    +++    +++.+...+....-..+..+ .+.++|+|.-.+
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e-a~~~adviy~~~   80 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVK-AVKDADVIYTDV   80 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHH-HTTTCSEEEECC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHH-HhhhccEEeecc
Confidence            5789999999974 8899999999999999999753    222    22222222222111223333 467789888544


Q ss_pred             CCC
Q 010101          436 AIG  438 (518)
Q Consensus       436 p~g  438 (518)
                      -..
T Consensus        81 ~~~   83 (163)
T d1pvva2          81 WAS   83 (163)
T ss_dssp             CCC
T ss_pred             eee
Confidence            333

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.22  E-value=0.69  Score=38.87  Aligned_cols=74  Identities=14%  Similarity=0.204  Sum_probs=49.4

Q ss_pred             cCCcEEEEEcc--chhHHHHHHHHHHCCCeEEEEeCCH--------HHHHHHHHHhcCcccccccccccCCCCccEEEEc
Q 010101          365 IAGKIFVLVGA--GGAGRALAFGAKSRGARVIIFNRNY--------ERAKALADAVSGEALHFEYLHEFFPEKGMILANA  434 (518)
Q Consensus       365 l~~k~vlvlGa--Gg~araia~~L~~~G~~v~i~nRt~--------~ka~~la~~~~~~~~~~~~l~~~~~~~~divIna  434 (518)
                      ++|++++++|=  ..++++.+.++...|++++++.-..        +++++.+...+....-.+++.+ ...++|+|.-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~-ai~~aDviyt~   79 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEE-ALAGADVVYTD   79 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHH-HHTTCSEEEEC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHH-hhhhhhheecc
Confidence            46899999995  4799999999999999999988632        2334445554433322334444 56778999865


Q ss_pred             CCCCC
Q 010101          435 SAIGM  439 (518)
Q Consensus       435 tp~g~  439 (518)
                      +-..|
T Consensus        80 ~~q~~   84 (161)
T d1vlva2          80 VWASM   84 (161)
T ss_dssp             CCC--
T ss_pred             ceeee
Confidence            54433

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.16  E-value=0.24  Score=41.12  Aligned_cols=109  Identities=20%  Similarity=0.199  Sum_probs=65.8

Q ss_pred             CcEEEEEccc----hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          367 GKIFVLVGAG----GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       367 ~k~vlvlGaG----g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      .|++.|+|+.    ..|..++..|.+.|++|+.+|...+.      -+|..  .+..+.+ .....|+++-++|....+.
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~------i~G~~--~~~sl~d-lp~~iD~v~i~vp~~~~~~   89 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE------VLGRK--CYPSVLD-IPDKIEVVDLFVKPKLTME   89 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE------ETTEE--CBSSGGG-CSSCCSEEEECSCHHHHHH
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc------cCCCc--ccccccc-cCccceEEEEEeCHHHHHH
Confidence            5799999985    58999999999999999999976321      11211  2233333 3345789888887543221


Q ss_pred             CCCCCCChhhhcCC-CEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHH
Q 010101          443 SDQSPVPKEALKAY-ELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFI  490 (518)
Q Consensus       443 ~~~~~~~~~~l~~~-~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~  490 (518)
                           +-+++...+ ..+ =+...-......+.|+++|+.++..--|++
T Consensus        90 -----~~~e~~~~g~k~v-~~~~G~~~ee~~~~a~~~gi~vig~~C~~v  132 (139)
T d2d59a1          90 -----YVEQAIKKGAKVV-WFQYNTYNREASKKADEAGLIIVANRCMMR  132 (139)
T ss_dssp             -----HHHHHHHHTCSEE-EECTTCCCHHHHHHHHHTTCEEEESCCHHH
T ss_pred             -----HHHHHHHhCCCEE-EEeccccCHHHHHHHHHCCCEEEcCCcChh
Confidence                 112222211 221 122222345677899999999886544443

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.01  E-value=0.32  Score=39.61  Aligned_cols=37  Identities=30%  Similarity=0.374  Sum_probs=31.3

Q ss_pred             CCcEEEEEccch-----------hHHHHHHHHHHCCCeEEEEeCCHHH
Q 010101          366 AGKIFVLVGAGG-----------AGRALAFGAKSRGARVIIFNRNYER  402 (518)
Q Consensus       366 ~~k~vlvlGaGg-----------~araia~~L~~~G~~v~i~nRt~~k  402 (518)
                      ..|+|||||+|+           ++--++.+|++.|+++.++|-+++.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            358999999983           5677888999999999999988765

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=85.80  E-value=0.33  Score=40.03  Aligned_cols=110  Identities=17%  Similarity=0.167  Sum_probs=66.8

Q ss_pred             CcEEEEEccc----hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCCCCCCC
Q 010101          367 GKIFVLVGAG----GAGRALAFGAKSRGARVIIFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAIGMEPN  442 (518)
Q Consensus       367 ~k~vlvlGaG----g~araia~~L~~~G~~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~g~~~~  442 (518)
                      .|++.|+||.    -.|..++..|.+.|++++++|-++.. ++   -.+..  .+..+.+ .....|+++-++|....+.
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-~~---i~g~~--~~~~l~~-i~~~iD~v~v~~p~~~v~~   85 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-EE---LFGEE--AVASLLD-LKEPVDILDVFRPPSALMD   85 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-SE---ETTEE--CBSSGGG-CCSCCSEEEECSCHHHHTT
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-ce---eecee--cccchhh-ccCCCceEEEeccHHHHHH
Confidence            5789999995    58999999999999999999876431 10   01111  2223333 2345799998888643332


Q ss_pred             CCCCCCChhhh--cCCCEEEEEeeCCCchHHHHHHHHCCCeeeccHHHHH
Q 010101          443 SDQSPVPKEAL--KAYELVFDAVYTPRNTRLLREAAEVGATVVSGVEMFI  490 (518)
Q Consensus       443 ~~~~~~~~~~l--~~~~~v~Di~Y~P~~T~ll~~A~~~G~~~i~G~~ml~  490 (518)
                           +-.++.  ....+++  .-.-..-.+.+.|++.|++++.+--+++
T Consensus        86 -----~v~~~~~~g~k~i~~--q~G~~~~e~~~~a~~~Gi~vV~~~C~~i  128 (136)
T d1iuka_          86 -----HLPEVLALRPGLVWL--QSGIRHPEFEKALKEAGIPVVADRCLMV  128 (136)
T ss_dssp             -----THHHHHHHCCSCEEE--CTTCCCHHHHHHHHHTTCCEEESCCHHH
T ss_pred             -----HHHHHHhhCCCeEEE--ecCccCHHHHHHHHHcCCEEEcCCccHH
Confidence                 112222  2222221  1122356788999999999887655544

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.62  E-value=0.46  Score=39.52  Aligned_cols=35  Identities=23%  Similarity=0.150  Sum_probs=30.7

Q ss_pred             CCcEEEEE--ccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       366 ~~k~vlvl--GaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .++.++|+  |+|-+|-.+|..|+++|++|+++.|..
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            36778887  778899999999999999999999874

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.04  E-value=0.4  Score=41.90  Aligned_cols=30  Identities=30%  Similarity=0.527  Sum_probs=28.1

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          370 FVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       370 vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      ++|||+|.+|..+|..++++|.+|.|+.+.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            799999999999999999999999999764

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.97  E-value=0.54  Score=38.26  Aligned_cols=48  Identities=17%  Similarity=0.207  Sum_probs=34.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHHhcCcccccccccccCCCCccEEEEcCCC
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGARVI-IFNRNYERAKALADAVSGEALHFEYLHEFFPEKGMILANASAI  437 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~~v~-i~nRt~~ka~~la~~~~~~~~~~~~l~~~~~~~~divInatp~  437 (518)
                      |+.|.|+ |-||++++..+.+.|+++. .++++.                .+     ...++|++|+-|.+
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~----------------~~-----~~~~~DVvIDFS~p   51 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG----------------VE-----ELDSPDVVIDFSSP   51 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE----------------EE-----ECSCCSEEEECSCG
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc----------------HH-----HhccCCEEEEecCH
Confidence            6899996 9999999998888888543 333321                11     23457999998854

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.95  E-value=0.39  Score=43.54  Aligned_cols=30  Identities=27%  Similarity=0.521  Sum_probs=28.5

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          370 FVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       370 vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      ++|||+|.+|..+|..++++|.+|.|+.+.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            799999999999999999999999999875

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.79  E-value=0.23  Score=46.46  Aligned_cols=35  Identities=26%  Similarity=0.373  Sum_probs=30.4

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCH
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSR--GARVIIFNRNY  400 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~--G~~v~i~nRt~  400 (518)
                      .++.|+|||+|.+|.++|+.|++.  |.+|+|+.+..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            356799999999999999999864  78999999864

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.53  E-value=3.5  Score=35.91  Aligned_cols=151  Identities=7%  Similarity=0.054  Sum_probs=95.5

Q ss_pred             eEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcHHHHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHHHHH
Q 010101           10 LVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQV   88 (518)
Q Consensus        10 ~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~l   88 (518)
                      +||+.+-..+.++++.-+++ ....++.+|+=.+++. ... +.+..+++..+.|++.=.-. .+-|      ... ...
T Consensus         4 ki~lAlD~~~~~~a~~l~~~-~~~~v~~iKig~~l~~~~G~-~~v~~l~~~~~~~i~~D~K~-~DIg------~t~-~~~   73 (212)
T d1km4a_           4 RLILAMDLMNRDDALRVTGE-VREYIDTVKIGYPLVLSEGM-DIIAEFRKRFGCRIIADFAV-ADIP------ETN-EKI   73 (212)
T ss_dssp             GEEEEECCSSHHHHHHHHHH-HTTTCSEEEEEHHHHHHHCT-HHHHHHHHHHCCEEEEEEEE-CSCH------HHH-HHH
T ss_pred             CeEEEecCCCHHHHHHHHHH-hCCCCcEEEECHHHHHhcCH-HHHHHHHHhcccceehhhhh-hccc------cHH-HHh
Confidence            49999999999999998877 4677999999998886 333 35777776667887754432 2222      222 244


Q ss_pred             HHHHhhcCCcEEEEecCCCCchhhHHHh-hcCCCcEEEEeeecCCCCCCCh-----hHHHHHHHHHHHcCCCEEEEEccc
Q 010101           89 LRRALDLDVEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSYLNGGGKPTT-----EKLGDVIACMQATGADVMKLEIAV  162 (518)
Q Consensus        89 l~~~~~~g~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~~tp~~-----~~l~~~~~~~~~~gadivKia~~~  162 (518)
                      .+.+.++|+|++-|=-....+.++...+ .+..+.++++--+.-   .++.     ....+..+.....|.+  -+++..
T Consensus        74 ~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~s---~~~~~~~~~~~~~~~~~~~~~~g~~--g~v~~~  148 (212)
T d1km4a_          74 CRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMS---HPGAEMFIQGAADEIARMGVDLGVK--NYVGPS  148 (212)
T ss_dssp             HHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSCS---SGGGGTTHHHHHHHHHHHHHHHTCC--EEECCT
T ss_pred             HhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhhc---chhhhhhhhhHHHHHHHHHHHhCCc--cccccc
Confidence            5667788999999998877766666654 333345554422211   1221     1344444555566644  456777


Q ss_pred             CCcccHHHHHHHh
Q 010101          163 DSITDLAPVFEML  175 (518)
Q Consensus       163 ~~~~D~~~l~~~~  175 (518)
                      .++++...+-+..
T Consensus       149 ~~~~~i~~ir~~~  161 (212)
T d1km4a_         149 TRPERLSRLREII  161 (212)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             cCHHHHhhhhhcc
Confidence            7777776665544

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.11  E-value=0.69  Score=37.71  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=27.4

Q ss_pred             CcEEEEEccchhHHHHHHHHH----HCCCeEEEEeCC
Q 010101          367 GKIFVLVGAGGAGRALAFGAK----SRGARVIIFNRN  399 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~----~~G~~v~i~nRt  399 (518)
                      .++++|+|+|.+|--++..|.    +.|.+|+++.+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccc
Confidence            579999999999888887774    468899998874

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=84.08  E-value=0.48  Score=37.47  Aligned_cols=34  Identities=26%  Similarity=0.160  Sum_probs=27.9

Q ss_pred             CcEEEEEccchhHHHHHHHHHH---CCCeEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKS---RGARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~---~G~~v~i~nRt~  400 (518)
                      .++++|+|+|.+|--+|..|..   .|.+|+++.|.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            4899999999999988876554   477999999853

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.96  E-value=0.22  Score=50.72  Aligned_cols=34  Identities=15%  Similarity=0.209  Sum_probs=31.2

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGA-RVIIFNR  398 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~-~v~i~nR  398 (518)
                      +.+.+|+|+|+||.|--++..|+..|+ +++|++.
T Consensus        23 L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~   57 (529)
T d1yova1          23 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDG   57 (529)
T ss_dssp             HHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcC
Confidence            456899999999999999999999999 9999875

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.96  E-value=0.44  Score=41.14  Aligned_cols=31  Identities=6%  Similarity=0.154  Sum_probs=27.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA--RVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~--~v~i~nRt  399 (518)
                      ||+|||+|-+|-.+|..|.+++.  +|+++.|.
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            69999999999999999998765  89999875

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=83.80  E-value=1.2  Score=38.49  Aligned_cols=109  Identities=11%  Similarity=0.076  Sum_probs=71.6

Q ss_pred             CceEEEeecCCCHHHHHHHHHHHHhhCCCEEEEEeccCC-CCcHHHHHHHhcC-CCCcEEEEeecCCCCCCCCCCcHHHH
Q 010101            8 SLLVCTQLECETTEEMQASIEQAKVEGADLVELCIDSME-FSHISEVDKLIQH-PTLPAIVSYRLKSSRKSSDEACKNTC   85 (518)
Q Consensus         8 ~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRlD~l~-~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~   85 (518)
                      +|++|+.+-..++++++..++. ...++|.+++-++++. +.+ +.+..+++. .+.+++...-       +... ....
T Consensus         1 ~p~l~vAlD~~~~~~~~~~~~~-~~~~vdiikig~~~~~~~G~-~~i~~l~~~~~~~~i~~d~k-------~~d~-~~~~   70 (213)
T d1q6oa_           1 LPMLQVALDNQTMDSAYETTRL-IAEEVDIIEVGTILCVGEGV-RAVRDLKALYPHKIVLADAK-------IADA-GKIL   70 (213)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHH-HGGGCSEEEECHHHHHHHCT-HHHHHHHHHCTTSEEEEEEE-------ECSC-HHHH
T ss_pred             CCcEEEEecCCCHHHHHHHHHh-cCCCccEEEeCeeccccCCH-HHHHHHHHhcccccceeEEe-------eccc-hHHH
Confidence            5899999999999999998877 4578999999988875 444 356777764 3566665542       1222 2222


Q ss_pred             HHHHHHHhhcCCcEEEEecCCCCchhhHHHh-hcCCCcEEEEeee
Q 010101           86 LQVLRRALDLDVEFVEMDYEVASDPLMSEII-YSRSNTKIIVSSY  129 (518)
Q Consensus        86 ~~ll~~~~~~g~~yvDiEl~~~~~~~~~l~~-~~~~~~kiI~S~H  129 (518)
                         ...+.+.|+|++-+-.....+.++...+ .+..+.++.+...
T Consensus        71 ---~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~~~  112 (213)
T d1q6oa_          71 ---SRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELT  112 (213)
T ss_dssp             ---HHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             ---HHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecccC
Confidence               2344677899999876665555555444 3344556655433

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.78  E-value=0.41  Score=38.74  Aligned_cols=36  Identities=14%  Similarity=0.207  Sum_probs=31.8

Q ss_pred             cCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          365 IAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       365 l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      +++|+|+|+|.|..|--.|..|.+..-+|+++-|..
T Consensus        25 ~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          25 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            579999999999999999998988766999999864

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.77  E-value=0.72  Score=43.57  Aligned_cols=37  Identities=24%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             cccCCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC
Q 010101          363 SPIAGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       363 ~~l~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt  399 (518)
                      +..++.+|||.|+ |-.|+.++..|.+.|.+|++++|.
T Consensus        11 ~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          11 WPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             CTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            4557889999987 669999999999999999999764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.40  E-value=0.39  Score=40.03  Aligned_cols=30  Identities=27%  Similarity=0.377  Sum_probs=26.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      |++|||+|.+|-.+|..|.+ +.+|+++.|.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecc
Confidence            79999999999999999865 6699999874

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.12  E-value=0.58  Score=43.61  Aligned_cols=32  Identities=28%  Similarity=0.270  Sum_probs=29.1

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt  399 (518)
                      |++||.|| |-.|+.++..|.+.|++|+.++|.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            78999998 559999999999999999999984

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.11  E-value=0.5  Score=38.22  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=31.5

Q ss_pred             ccCCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          364 PIAGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       364 ~l~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .++||+|+|+|.|..|--.|..|++..-+|+++.|..
T Consensus        27 ~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          27 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             hcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            4689999999999988888888988755999998754

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=83.03  E-value=0.61  Score=40.22  Aligned_cols=71  Identities=14%  Similarity=0.098  Sum_probs=45.4

Q ss_pred             CCcEEEEE--ccchhHHHHHHHHHHCCCeEEEEeCCHHHHH---HHHHHhcCccc-ccc-----ccc----c---cCCCC
Q 010101          366 AGKIFVLV--GAGGAGRALAFGAKSRGARVIIFNRNYERAK---ALADAVSGEAL-HFE-----YLH----E---FFPEK  427 (518)
Q Consensus       366 ~~k~vlvl--GaGg~araia~~L~~~G~~v~i~nRt~~ka~---~la~~~~~~~~-~~~-----~l~----~---~~~~~  427 (518)
                      +|.+++|+  |+|+.|.+++.-++.+|++|..+-|+.++.+   +.++++|...+ ..+     +..    +   .....
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            46789998  5688999999888889998777666554433   34567775432 211     110    0   01245


Q ss_pred             ccEEEEcCC
Q 010101          428 GMILANASA  436 (518)
Q Consensus       428 ~divInatp  436 (518)
                      .|+++|++.
T Consensus       108 vdvv~D~vg  116 (189)
T d1gu7a2         108 AKLALNCVG  116 (189)
T ss_dssp             EEEEEESSC
T ss_pred             ceEEEECCC
Confidence            899999874

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=82.97  E-value=0.35  Score=45.21  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=28.9

Q ss_pred             cEEEEEccchhHHHHHHHHH-----HCCCeEEEEeCCH
Q 010101          368 KIFVLVGAGGAGRALAFGAK-----SRGARVIIFNRNY  400 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~-----~~G~~v~i~nRt~  400 (518)
                      -.|+|+|+|.+|.++|..|+     +.|.+|+|+.|.+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            46999999999999999996     4688999999864

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.80  E-value=3  Score=36.50  Aligned_cols=68  Identities=15%  Similarity=0.193  Sum_probs=38.3

Q ss_pred             CCcEEEEE-ccc---hhHHHHHHHHHHCCCeEEEEeCCHHH------HHHHHHHhcCcccccccccccCCCCccEEEEcC
Q 010101          366 AGKIFVLV-GAG---GAGRALAFGAKSRGARVIIFNRNYER------AKALADAVSGEALHFEYLHEFFPEKGMILANAS  435 (518)
Q Consensus       366 ~~k~vlvl-GaG---g~araia~~L~~~G~~v~i~nRt~~k------a~~la~~~~~~~~~~~~l~~~~~~~~divInat  435 (518)
                      ++++++|+ |.|   |=|-+++..|...|++|+++.....+      ..++...++......  ........+|+||++-
T Consensus        39 ~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dlIIDal  116 (211)
T d2ax3a2          39 SDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVEQ--FEPSILNEFDVVVDAI  116 (211)
T ss_dssp             TTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEESC--CCGGGGGGCSEEEEES
T ss_pred             cCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccCCcHHHHHHHHHHHcCCccccc--cccccccCceEEEEec
Confidence            34555555 764   78888899999999987777653221      112223333222211  1111234579999986

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.72  E-value=0.73  Score=35.06  Aligned_cols=32  Identities=22%  Similarity=0.427  Sum_probs=27.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      ||||||+||---|+++.|.+...+|+++-=+.
T Consensus         2 kVLviGsGgREHAia~~l~~s~~~v~~~pGN~   33 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAKQGYEVHFYPGNA   33 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCeEEEecCCc
Confidence            79999999999999999998777899885443

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=82.35  E-value=0.56  Score=44.42  Aligned_cols=30  Identities=17%  Similarity=0.302  Sum_probs=28.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNR  398 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nR  398 (518)
                      .|+|||+|-+|..+|+.|++.|.+|.|+-|
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            589999999999999999999999999987

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.65  E-value=0.69  Score=36.60  Aligned_cols=34  Identities=18%  Similarity=0.081  Sum_probs=28.2

Q ss_pred             CcEEEEEccchhHHHHHHHHHHCC---CeEEEEeCCH
Q 010101          367 GKIFVLVGAGGAGRALAFGAKSRG---ARVIIFNRNY  400 (518)
Q Consensus       367 ~k~vlvlGaGg~araia~~L~~~G---~~v~i~nRt~  400 (518)
                      .++++|+|+|.+|--+|..|..+|   .+|+++.|..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            579999999999999998777655   4799998853

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.25  E-value=1.2  Score=37.97  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             cEEEEEccchhHHHHHHHHHHCCC-eEE-EEeCCHHHHHHHHHHhcCcc-c-------ccc--------cccccCCCCcc
Q 010101          368 KIFVLVGAGGAGRALAFGAKSRGA-RVI-IFNRNYERAKALADAVSGEA-L-------HFE--------YLHEFFPEKGM  429 (518)
Q Consensus       368 k~vlvlGaGg~araia~~L~~~G~-~v~-i~nRt~~ka~~la~~~~~~~-~-------~~~--------~l~~~~~~~~d  429 (518)
                      .|+.|.|.|.+||.++.++.+..- +|. |.+.++......+...+... .       .+.        ++.+ ...+.|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLND-LLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHH-HHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhh-hhccCC
Confidence            479999999999999999987654 544 55555444333444443211 0       010        0111 134689


Q ss_pred             EEEEcCCCCC
Q 010101          430 ILANASAIGM  439 (518)
Q Consensus       430 ivInatp~g~  439 (518)
                      +||.||+...
T Consensus        82 vViEcTG~f~   91 (172)
T d2czca2          82 IIVDATPGGI   91 (172)
T ss_dssp             EEEECCSTTH
T ss_pred             EEEECCCCCC
Confidence            9999998753

>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=81.16  E-value=9.4  Score=35.52  Aligned_cols=202  Identities=8%  Similarity=-0.092  Sum_probs=119.7

Q ss_pred             HHHHHhcCCCCcEEEEeecCCCCCCCCCCcHHHHHHHHHHHhhcCCcEEEEecCCCC----chhhHH---H----h-hcC
Q 010101           52 EVDKLIQHPTLPAIVSYRLKSSRKSSDEACKNTCLQVLRRALDLDVEFVEMDYEVAS----DPLMSE---I----I-YSR  119 (518)
Q Consensus        52 ~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~~ll~~~~~~g~~yvDiEl~~~~----~~~~~l---~----~-~~~  119 (518)
                      .++++....+.|++.|+=..+=|    .+ .++..++....+.-|+|+|==|-...+    .+-+++   .    + .++
T Consensus         7 G~R~~lgv~~RPLlgtiiKP~~G----ls-p~~~a~~~~~~~~GGvD~IKDDE~l~~~~~~p~~eRv~~~~~av~~a~~e   81 (325)
T d1wdda1           7 VERDKLNKYGRPLLGCTIKPKLG----LS-AKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAE   81 (325)
T ss_dssp             HHHHHHTCCSSCEEECBCSSSSC----CC-HHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHH
T ss_pred             ehHHhhCCCCCCeEEeecCCCCC----CC-HHHHHHHHHHHHccCCceeeCCcccCCCCCcchHHHHHHHHHHHHHHHHh
Confidence            45666667799999999655444    34 788999999999999998754322221    111222   1    1 122


Q ss_pred             CCcEEEEeeecCCCCCCChhHHHHHHHHHHHcCCCEEEEEcccCCcccHHHHHHHhccC---------------CCCEEE
Q 010101          120 SNTKIIVSSYLNGGGKPTTEKLGDVIACMQATGADVMKLEIAVDSITDLAPVFEMLTHC---------------QVPLIA  184 (518)
Q Consensus       120 ~~~kiI~S~H~f~~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~---------------~~p~i~  184 (518)
                      .+.+.+.+.+..   .++.+++.+..+.+.+.|++.+=+.+...-++=+..|-+..+..               ..|--.
T Consensus        82 TG~~k~y~~nit---~~~~~em~~ra~~a~e~G~~~~mi~~~~~G~~a~~~l~~~~~~~~l~ih~Hra~~ga~tr~~~~G  158 (325)
T d1wdda1          82 TGEIKGHYLNAT---AGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHG  158 (325)
T ss_dssp             HSSCCEEEEECC---CSSHHHHHHHHHHHHHHTCSEEEEEHHHHCHHHHHHHHHHHHHHTCEEEEECTTHHHHHSCSSSE
T ss_pred             hCCceeEEeccC---CCCHHHHHHHHHHHHHcCCCEEEEecccccHHHHHHHHHhhhhcCceeecccccccccccCCCCC
Confidence            344566666643   34568999999999999999998887766655444444332111               335566


Q ss_pred             EecCCccchhhhcCCCCCCcccccccCCCCCCCCCCHHHHHHHhhhc-----------------cCCCCceEEEEecCCC
Q 010101          185 LAVGSRGLISQLLGPKFGGFLVYGSLGGKSVPGLPTLVSLKQVYQLE-----------------HINPDTKIFGLVSNPV  247 (518)
Q Consensus       185 ~~mG~~G~~sRi~~~~~gs~~ty~~~~~~sApGQ~~~~~l~~~~~~~-----------------~~~~~t~~~~liG~pi  247 (518)
                      |++...+++.|+.+.   ..+.|++....-.   .+-++..++.+..                 ........+-+.+-. 
T Consensus       159 is~~vl~kl~RLaGa---D~ih~~~~~Gk~~---~~~~~~~~~~~~l~~~~~~~d~~~~~~~~q~~~~~k~~~Pv~sGG-  231 (325)
T d1wdda1         159 MHFRVLAKALRMSGG---DHIHAGTVVGKLE---GEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASGG-  231 (325)
T ss_dssp             ECHHHHHHHHHHHCC---SEEECCCSSSSBC---CCHHHHHHHHHHHHCSEECCBGGGTBCSCEECTTCCCCEEEEESS-
T ss_pred             ccHHHHHHHHHHcCC---CccccCccccCcC---CCHHHHHHHHHHHHhhhcccccccCccccCcccCCCCeeeecCCC-
Confidence            888888999999862   2344444432211   1122332222211                 011112356666544 


Q ss_pred             CcccCHHHHHHHHHHcCCCceEEe
Q 010101          248 GHSKGPILHNPAFRHTRFNGIYVP  271 (518)
Q Consensus       248 ~hS~SP~~hn~~f~~~gl~~~y~~  271 (518)
                         .+|..-...++.+|-|..+..
T Consensus       232 ---~~~g~vp~~~~~~G~D~il~~  252 (325)
T d1wdda1         232 ---IHVWHMPALTEIFGDDSVLQF  252 (325)
T ss_dssp             ---CCGGGHHHHHHHHCSSSEEEC
T ss_pred             ---CCHhHHHHHHHhcCCcEEEEc
Confidence               456666677788998887653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=80.99  E-value=0.35  Score=45.64  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             CCcEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 010101          366 AGKIFVLVGAGGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       366 ~~k~vlvlGaGg~araia~~L~~~G~~v~i~nRt  399 (518)
                      +.-.|+|||+|.+|..+|..+++.|.+|.|+.+.
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            3445899999999999999999999999999764

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.91  E-value=0.8  Score=42.85  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=29.2

Q ss_pred             CCcEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC
Q 010101          366 AGKIFVLVGA-GGAGRALAFGAKSRGARVIIFNR  398 (518)
Q Consensus       366 ~~k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR  398 (518)
                      ..|++||.|+ |-.|+.++..|.+.|.+|+.++|
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            4589999988 56999999999999999998875

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=80.35  E-value=0.19  Score=42.21  Aligned_cols=122  Identities=16%  Similarity=0.142  Sum_probs=65.5

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCC---C-eEEEEeCCHHHHHHHHHHhcCcccccccccc-cCCCCccEEEEcCCCCCCC
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRG---A-RVIIFNRNYERAKALADAVSGEALHFEYLHE-FFPEKGMILANASAIGMEP  441 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G---~-~v~i~nRt~~ka~~la~~~~~~~~~~~~l~~-~~~~~~divInatp~g~~~  441 (518)
                      |+|.|+|| |-+|+-++..|.+..   . +++.+.++......+.  +........++.+ ....+.|+++.|+|.+..-
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~--~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~   79 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS--FGGTTGTLQDAFDLEALKALDIIVTCQGGDYTN   79 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG--GGTCCCBCEETTCHHHHHTCSEEEECSCHHHHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc--ccCCceeeecccchhhhhcCcEEEEecCchHHH
Confidence            57999999 669999998776543   2 6777766533211110  1111111111111 0234689999999754210


Q ss_pred             CCCCCCCChhhhcCC--CEEEEEeeCCC------------chHHHHHHHHCCCe-eeccHHHHHHHHHHH
Q 010101          442 NSDQSPVPKEALKAY--ELVFDAVYTPR------------NTRLLREAAEVGAT-VVSGVEMFIRQALGQ  496 (518)
Q Consensus       442 ~~~~~~~~~~~l~~~--~~v~Di~Y~P~------------~T~ll~~A~~~G~~-~i~G~~ml~~Qa~~q  496 (518)
                           .+.+.....+  .+|+|....-+            ....++.++++|++ ++.|..--+.|-+.|
T Consensus        80 -----~~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~~~~ig~~~~~~~~~~~~  144 (146)
T d1t4ba1          80 -----EIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGAAEPLRRMLRQ  144 (146)
T ss_dssp             -----HHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHH
T ss_pred             -----HhhHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCCceEEeccCcHHHHHHHH
Confidence                 1112222332  57888865322            24567888888887 455555444444443

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=80.22  E-value=0.82  Score=41.08  Aligned_cols=32  Identities=31%  Similarity=0.491  Sum_probs=28.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGARVIIFNRNY  400 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~~v~i~nRt~  400 (518)
                      .|+|||+|.+|-.+|.+++++|+++.++..+.
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            48999999999999999999999888876553

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=80.21  E-value=1.8  Score=37.04  Aligned_cols=30  Identities=13%  Similarity=0.195  Sum_probs=24.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 010101          369 IFVLVGAGGAGRALAFGAKSRGA-RVIIFNR  398 (518)
Q Consensus       369 ~vlvlGaGg~araia~~L~~~G~-~v~i~nR  398 (518)
                      |+.|.|.|.+||.+++++.+.+- +|.-+|.
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd   33 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAK   33 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEEC
Confidence            68999999999999999997754 6655554

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.11  E-value=0.72  Score=43.24  Aligned_cols=31  Identities=13%  Similarity=0.257  Sum_probs=27.3

Q ss_pred             cEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC
Q 010101          368 KIFVLVGA-GGAGRALAFGAKSRGARVIIFNR  398 (518)
Q Consensus       368 k~vlvlGa-Gg~araia~~L~~~G~~v~i~nR  398 (518)
                      |||||.|+ |-+|++++..|.+.|.+|++++|
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            78999998 55999999999999998888853

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.06  E-value=0.54  Score=42.39  Aligned_cols=31  Identities=26%  Similarity=0.388  Sum_probs=28.5

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC
Q 010101          369 IFVLVGA-GGAGRALAFGAKSRGARVIIFNRN  399 (518)
Q Consensus       369 ~vlvlGa-Gg~araia~~L~~~G~~v~i~nRt  399 (518)
                      ||||+|+ |-.|+.++..|.+.|++|+.++|.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~   34 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQ   34 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeech
Confidence            6999998 779999999999999999999985