Citrus Sinensis ID: 010169

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------
MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLFVLQLMLVFWLLIRRHLKSQISVKEDKYKKESMLFSVNRGHPDYLSFKPEKRPAEKASQAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTARK
cccccccccccccccccccEEEEEEcccccEEEEEEEEccHHHHHHccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHccccEEEEcccccccEEEEEEccccccccccccccccccccHHHcccccccccccccccEEEEEEcccccHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccEEccHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccccccccccEEEEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHcccEEEEccccccccEEEEcccHHHHHHHHHHHHcccccccEEEccccccc
cccccccccccccccccccEEEEEEccccccEEEEEEEEcHHHHHHccccccEEEEEEEEcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEcccccEEEEEEEcccEEEEEEcccccEEEEEEEccccccHcccEcccccccccccccccccccccccccccEEEEEEcccHcHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccEEEccHHHHHHHHcccccccccccccccHHHHHHHHHHHccccEEEEcccccEEcccccccEEEEEEEEcccEEEEEEEcccHccccHHHHHHHHHHHHccccEEcccccccccEEEEEccHHHHHHHHHHHHccccHHHEEHHHccccc
mfpgisipadglpsflsgepwavkvpgnpapiavgsttMSSTEALKAGLRGKALRITHYYRDllwgsveghsvpnagfledvvvedpaflstsqvsdscegaadssndqkngeegiidadnansepnstsatqddfdgNIVEQVAADvgdlkltenvdagetneehhvltTEDVDAYLDKCLLQALHttvkdkdlpmpgstlwsnhilpcrpsgitldikKSSHKKLTKWLQAKSSAGLFVLQLMLVFWLLIRRHLKSQISVKEDKYKKESMLFsvnrghpdylsfkpekrpaekaSQAVDhaasdniqpakilevtevykpsvhvnpifasvgadtgrlytFSEACDVVFNYIekenlvkptaksivvldptlsdaLFKGaikkgttypteihkkdlgstFVNRMQAHHVVSRGSQSVVRKGALKTIQIVTERRqgnkkmtklsgletflmDPEALASELQKKFACsttvaelpgkkgqevLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTARK
mfpgisipadglPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAadssndqknGEEGIIDADNANSEPNStsatqddfdgNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLFVLQLMLVFWLLIRRHLKSqisvkedkykkeSMLFSVNRGHPDYLSFKPEKRPAEKASQAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKenlvkptaksivvLDPTLSDALFKGAikkgttypteihKKDLGSTFVNRMQAHHvvsrgsqsvvrkgalktiqivterrqgnkkmtklSGLETFLMDPEALASELQKKFACSTTVaelpgkkgQEVLIQGGVIADVAKHLVeqfgipkryievldktark
MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLFVLQLMLVFWLLIRRHLKSQISVKEDKYKKESMLFSVNRGHPDYLSFKPEKRPAEKASQAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTARK
*******************PWAVKV******************ALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFL*************************************************IVEQVAADVGDLKLTENVD*****EEHHVLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLFVLQLMLVFWLLIRRHLKSQISV************************************************AKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQAHHVVSRGSQSVVRKGALKTIQIVT*************GLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVL******
MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEA**AGLRGKALRITHYYRDLLWGSVEG******************************************************************************************************DVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLFVLQLMLVFWLLIRRHL*************ESMLFSVNRGHPDYLSFK****************************VTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALF*********************TFVNRMQ********************IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTA**
MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFL*********************GEEGIIDADNAN*********QDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLFVLQLMLVFWLLIRRHLKSQISVKEDKYKKESMLFSVNRGHPDYLSFKPE*************AASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQAH************KGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTARK
*FPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDV*************************************************************************************VLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLFVLQLMLVFWLLIRRHLKSQISVKEDKYKKESMLFSVNRGHPDYLSFKPEKR*******************AKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTA**
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MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGLFVLQLMLVFWLLIRRHLKSQISVKEDKYKKESMLFSVNRGHPDYLSFKPEKRPAEKASQAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTARK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query516 2.2.26 [Sep-21-2011]
Q5PPG7570 Eukaryotic translation in yes no 0.854 0.773 0.297 3e-46
P0CL18566 Eukaryotic translation in yes no 0.852 0.777 0.295 3e-45
Q61211570 Eukaryotic translation in yes no 0.870 0.787 0.290 1e-43
Q58CR3579 Eukaryotic translation in yes no 0.885 0.789 0.296 2e-43
Q5RA63584 Eukaryotic translation in yes no 0.899 0.794 0.285 5e-42
P41214584 Eukaryotic translation in yes no 0.899 0.794 0.285 9e-42
Q04600565 Translation machinery-ass yes no 0.686 0.626 0.253 3e-17
Q1E556200 Translation machinery-ass N/A no 0.172 0.445 0.376 3e-06
Q2TVZ2194 Translation machinery-ass no no 0.182 0.484 0.346 6e-05
A1C8E3194 Translation machinery-ass N/A no 0.182 0.484 0.346 7e-05
>sp|Q5PPG7|EIF2D_RAT Eukaryotic translation initiation factor 2D OS=Rattus norvegicus GN=Eif2d PE=2 SV=1 Back     alignment and function desciption
 Score =  186 bits (473), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 157/528 (29%), Positives = 251/528 (47%), Gaps = 87/528 (16%)

Query: 1   MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
           M PG+ +P  GLP    G+  A+ + GN AP+AVG   MS+ + L +GL+GK + + H Y
Sbjct: 113 MLPGVVVPPTGLPQVQQGDLCAIALVGNRAPVAVGVAAMSTAQMLASGLKGKGISVLHTY 172

Query: 61  RDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAAD--------SSNDQKNG 112
           +D LW S +  S P    L      DP        +DSCE  AD        S + +   
Sbjct: 173 QDHLWRSGDKSSPPAIAPL------DP--------TDSCEEKADLGLHGNLRSLSLEGEE 218

Query: 113 EEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETNEEHHVLTTE 172
           E G +    A+ +PNS + +QD  DG  ++                             E
Sbjct: 219 ENGQVPNPEASDDPNSRALSQDSVDGKPLQ-----------------------------E 249

Query: 173 DVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQ 232
            +D  L++C L AL + VK  DLP+  STL  +H+  C P G  LDIKKSS+KKL+K+LQ
Sbjct: 250 QMDELLEQCFLHALKSRVKKADLPLLTSTLLGSHMFSCCPEGQQLDIKKSSYKKLSKFLQ 309

Query: 233 AKSSAGLFVLQLMLVFWLLIRRHLKSQ--ISVKEDKYKKESMLFSVNRGHPDYLSF-KPE 289
                                 H++ +  + VKE     ES++ +V+  HP   SF  PE
Sbjct: 310 ----------------------HMQQEQIVQVKELSKGVESIV-AVDWRHPRITSFIVPE 346

Query: 290 KRPAEKASQAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDV 349
                 ASQ V   + +  +P    ++  +Y    ++  +F   G   G     SE   +
Sbjct: 347 ---PSLASQTVQEGSRE--KPYLPPDIKSLYCVPANMTQLFLESGHKKGSTLEGSEVRRI 401

Query: 350 VFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQ-A 408
           + +Y ++ NLV    +++V LDP L D + +   K       ++    L +  +  +Q A
Sbjct: 402 ITDYAKRNNLVDADNRNLVKLDPILCDCILE---KNEQHLVMKLPWDSLLTRCLKNLQPA 458

Query: 409 HHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACS 468
           + V   G + +++KG L  I I    +  NKK+T +  LET+ +DP ++A+ LQ++   S
Sbjct: 459 YQVTFPGQEPIIKKGKLCPIDITLVLKTYNKKVTVVRNLETYGLDPCSVAAILQQRCQAS 518

Query: 469 TTVAELPGKKGQ-EVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTAR 515
           T V+  PG K   +V +QG  I  + + L+E++ +P +YI+ L+K  +
Sbjct: 519 TIVSPAPGAKDSLQVQVQGNQIHHLGQLLLEEYRLPGKYIQGLEKAPK 566
Translation initiation factor that is able to deliver tRNA to the P-site of the eukaryotic ribosome in a GTP-independent manner. The binding of Met-tRNA(I) occurs after the AUG codon finds its position in the P-site of 40S ribosomes, the situation that takes place during initiation complex formation on some specific RNAs. Its activity in tRNA binding with 40S subunits does not require the presence of the aminoacyl moiety. Possesses the unique ability to deliver non-Met (elongator) tRNAs into the P-site of the 40S subunit. In addition to its role in initiation, can promote release of deacylated tRNA and mRNA from recycled 40S subunits following ABCE1-mediated dissociation of post-termination ribosomal complexes into subunits.
Rattus norvegicus (taxid: 10116)
>sp|P0CL18|EIF2D_RABIT Eukaryotic translation initiation factor 2D OS=Oryctolagus cuniculus GN=EIF2D PE=1 SV=1 Back     alignment and function description
>sp|Q61211|EIF2D_MOUSE Eukaryotic translation initiation factor 2D OS=Mus musculus GN=Eif2d PE=2 SV=3 Back     alignment and function description
>sp|Q58CR3|EIF2D_BOVIN Eukaryotic translation initiation factor 2D OS=Bos taurus GN=EIF2D PE=2 SV=1 Back     alignment and function description
>sp|Q5RA63|EIF2D_PONAB Eukaryotic translation initiation factor 2D OS=Pongo abelii GN=EIF2D PE=2 SV=1 Back     alignment and function description
>sp|P41214|EIF2D_HUMAN Eukaryotic translation initiation factor 2D OS=Homo sapiens GN=EIF2D PE=1 SV=3 Back     alignment and function description
>sp|Q04600|TMA64_YEAST Translation machinery-associated protein 64 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMA64 PE=1 SV=1 Back     alignment and function description
>sp|Q1E556|DENR_COCIM Translation machinery-associated protein 22 OS=Coccidioides immitis (strain RS) GN=TMA22 PE=3 SV=1 Back     alignment and function description
>sp|Q2TVZ2|DENR_ASPOR Translation machinery-associated protein 22 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=tma22 PE=3 SV=1 Back     alignment and function description
>sp|A1C8E3|DENR_ASPCL Translation machinery-associated protein 22 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=tma22 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
224124372597 predicted protein [Populus trichocarpa] 0.932 0.805 0.735 0.0
255564966616 ligatin, putative [Ricinus communis] gi| 0.953 0.798 0.722 0.0
225460008609 PREDICTED: eukaryotic translation initia 0.949 0.804 0.710 0.0
356531702611 PREDICTED: eukaryotic translation initia 0.955 0.806 0.667 0.0
357470191600 Ligatin [Medicago truncatula] gi|3555064 0.941 0.81 0.674 0.0
388513543600 unknown [Medicago truncatula] 0.941 0.81 0.672 0.0
356544210611 PREDICTED: eukaryotic translation initia 0.955 0.806 0.667 0.0
115446721603 Os02g0557600 [Oryza sativa Japonica Grou 0.941 0.805 0.635 1e-179
357149545597 PREDICTED: eukaryotic translation initia 0.922 0.797 0.619 1e-176
297841901603 eukaryotic translation initiation factor 0.945 0.809 0.624 1e-175
>gi|224124372|ref|XP_002319315.1| predicted protein [Populus trichocarpa] gi|222857691|gb|EEE95238.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/518 (73%), Positives = 425/518 (82%), Gaps = 37/518 (7%)

Query: 1   MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYY 60
           MFPGISIPA+GLPSFL GEPWAVKVPGNPAPIAVGSTTMS+ EALKAGLRGKALRITHYY
Sbjct: 114 MFPGISIPAEGLPSFLVGEPWAVKVPGNPAPIAVGSTTMSTAEALKAGLRGKALRITHYY 173

Query: 61  RDLLWGSVEGHSVPNAGFLEDVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDAD 120
           RDLLW SVEGH VPNAGFLEDVV EDP FLS++QV DSCEG+ DSSN +           
Sbjct: 174 RDLLWESVEGHYVPNAGFLEDVVFEDPVFLSSAQVPDSCEGSGDSSNHE----------- 222

Query: 121 NANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENVDAGETN---EEHHVLTTEDVDAY 177
           N +S P  TS TQ D D + VEQV   VG  K+T+N+ A E+    EE H L+ EDVDAY
Sbjct: 223 NDDSHP--TSKTQLDSDTDTVEQVTKAVGGFKVTDNIAADESTTVVEEQHTLSAEDVDAY 280

Query: 178 LDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSA 237
           LDKCLLQALHTTV DKDLPMPGSTLWSNH+LPCRPSGITLDIKKSSHKKL+KWLQAKSSA
Sbjct: 281 LDKCLLQALHTTVNDKDLPMPGSTLWSNHVLPCRPSGITLDIKKSSHKKLSKWLQAKSSA 340

Query: 238 GLFVLQLMLVFWLLIRRHLKSQISVKEDKYKKESMLFSVNRGHPDYLSFKPEKRPAEKAS 297
           GL                    ISVKEDKYKKE++LFSVNR H DYLSFKPE+R  +K  
Sbjct: 341 GL--------------------ISVKEDKYKKETVLFSVNRSHLDYLSFKPERRQEQKVD 380

Query: 298 QAVDHAASDNIQPAKILEVTEVYKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKE 357
           Q  D A  +   P K+LEV+E+YKPSVHVNPIFASVGADTG+LY+ SEA DVVF YIEK 
Sbjct: 381 QGGDQAIKETRSP-KLLEVSEIYKPSVHVNPIFASVGADTGKLYSASEASDVVFKYIEKG 439

Query: 358 NLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIHKKDLGSTFVNRMQAHHVVSRGSQ 417
           +LVK   KSIVVLDPTL DALFKGAIKKG+ YPTEIHKKDLGSTFV+RMQAHHVV+RGS+
Sbjct: 440 HLVKTMNKSIVVLDPTLCDALFKGAIKKGSAYPTEIHKKDLGSTFVSRMQAHHVVTRGSE 499

Query: 418 SVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGK 477
           SVVRKG+++TIQI+TERRQGNKK+TKLSG+ETFLMD +ALASELQKK ACST+V+ELPGK
Sbjct: 500 SVVRKGSVRTIQIMTERRQGNKKVTKLSGMETFLMDADALASELQKKCACSTSVSELPGK 559

Query: 478 KGQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTAR 515
           KG EVLIQGGVI DVA+HLVEQ+G+PKRYIE+LDKT +
Sbjct: 560 KGHEVLIQGGVIDDVARHLVEQYGVPKRYIEILDKTKK 597

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564966|ref|XP_002523476.1| ligatin, putative [Ricinus communis] gi|223537304|gb|EEF38935.1| ligatin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225460008|ref|XP_002271249.1| PREDICTED: eukaryotic translation initiation factor 2D [Vitis vinifera] gi|297734795|emb|CBI17029.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531702|ref|XP_003534415.1| PREDICTED: eukaryotic translation initiation factor 2D-like [Glycine max] Back     alignment and taxonomy information
>gi|357470191|ref|XP_003605380.1| Ligatin [Medicago truncatula] gi|355506435|gb|AES87577.1| Ligatin [Medicago truncatula] Back     alignment and taxonomy information
>gi|388513543|gb|AFK44833.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356544210|ref|XP_003540547.1| PREDICTED: eukaryotic translation initiation factor 2D-like [Glycine max] Back     alignment and taxonomy information
>gi|115446721|ref|NP_001047140.1| Os02g0557600 [Oryza sativa Japonica Group] gi|46390907|dbj|BAD16422.1| putative Ligatin (Hepatocellular carcinoma-associated antigen 56) [Oryza sativa Japonica Group] gi|113536671|dbj|BAF09054.1| Os02g0557600 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357149545|ref|XP_003575149.1| PREDICTED: eukaryotic translation initiation factor 2D-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|297841901|ref|XP_002888832.1| eukaryotic translation initiation factor SUI1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297334673|gb|EFH65091.1| eukaryotic translation initiation factor SUI1 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query516
TAIR|locus:2825349597 AT1G71350 [Arabidopsis thalian 0.494 0.427 0.688 1.1e-163
UNIPROTKB|F1NDA1601 EIF2D "Uncharacterized protein 0.494 0.424 0.328 1.2e-53
ZFIN|ZDB-GENE-040426-1226590 eif2d "eukaryotic translation 0.496 0.433 0.322 1.6e-49
RGD|1561765570 Eif2d "eukaryotic translation 0.490 0.443 0.280 2.9e-46
MGI|MGI:109342570 Eif2d "eukaryotic translation 0.490 0.443 0.284 1.1e-44
UNIPROTKB|F1SEZ6585 EIF2D "Uncharacterized protein 0.490 0.432 0.292 7.5e-34
UNIPROTKB|E2R801584 EIF2D "Uncharacterized protein 0.486 0.429 0.286 1.1e-33
UNIPROTKB|Q58CR3579 EIF2D "Eukaryotic translation 0.490 0.436 0.292 2e-33
UNIPROTKB|G8JKW9578 EIF2D "Eukaryotic translation 0.488 0.435 0.292 4.4e-33
UNIPROTKB|Q5RA63584 EIF2D "Eukaryotic translation 0.478 0.422 0.297 1.5e-32
TAIR|locus:2825349 AT1G71350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 899 (321.5 bits), Expect = 1.1e-163, Sum P(2) = 1.1e-163
 Identities = 177/257 (68%), Positives = 212/257 (82%)

Query:   260 ISVKEDKYKKESMLFSVNRGHPDYLSFKPEKRPAEKASQAVDHAASDNIQPAKILEVTEV 319
             ISVKEDK+KKE +L SVNR HPDY SFKPEK+ AE  S++    ++   Q  K LE+ EV
Sbjct:   342 ISVKEDKHKKEIVLISVNRSHPDYKSFKPEKKKAE-VSESPGERSTAQAQSEKGLEIIEV 400

Query:   320 YKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALF 379
             YK S+H + IFASVG D G LYT SEA DVVF YIEKENLVKPT KS+VVLDP L DALF
Sbjct:   401 YKSSIHNSAIFASVGEDKGNLYTASEATDVVFKYIEKENLVKPTNKSMVVLDPILCDALF 460

Query:   380 KGAIKKGTTYPTEIHKKDLGSTFVNRMQAHHVVSRGS-QSVVRKGALKTIQIVTERRQGN 438
             KGAIKKG+ YP+EIHKKD+GSTFV RMQ +HVV RG  + VVRKGA+K +QI+TERRQGN
Sbjct:   461 KGAIKKGSAYPSEIHKKDVGSTFVGRMQPNHVVMRGGGEPVVRKGAVKPVQIMTERRQGN 520

Query:   439 KKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLVE 498
             KK+TK++G+ETFL+DP++  SELQKKFACST+V ELPGKKG EVLIQGGVI ++A+++VE
Sbjct:   521 KKVTKVTGMETFLIDPDSFGSELQKKFACSTSVGELPGKKGYEVLIQGGVIDNLARYMVE 580

Query:   499 QFGIPKRYIEVLDKTAR 515
              +G+PKRYIEVLDKT +
Sbjct:   581 HYGVPKRYIEVLDKTRK 597
GO:0003723 "RNA binding" evidence=IEA
GO:0003743 "translation initiation factor activity" evidence=IEA;ISS
GO:0006413 "translational initiation" evidence=IEA;ISS
UNIPROTKB|F1NDA1 EIF2D "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1226 eif2d "eukaryotic translation initiation factor 2D" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1561765 Eif2d "eukaryotic translation initiation factor 2D" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:109342 Eif2d "eukaryotic translation initiation factor 2D" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SEZ6 EIF2D "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R801 EIF2D "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q58CR3 EIF2D "Eukaryotic translation initiation factor 2D" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G8JKW9 EIF2D "Eukaryotic translation initiation factor 2D" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RA63 EIF2D "Eukaryotic translation initiation factor 2D" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
cd1160885 cd11608, eIF2D_C, C-terminal domain of eIF2D and r 1e-34
pfam0125374 pfam01253, SUI1, Translation initiation factor SUI 4e-17
COG0023104 COG0023, SUI1, Translation initiation factor 1 (eI 5e-13
cd1160786 cd11607, DENR_C, C-terminal domain of DENR and rel 6e-12
cd0047478 cd00474, eIF1_SUI1_like, Eukaryotic initiation fac 1e-08
TIGR01159173 TIGR01159, DRP1, density-regulated protein DRP1 1e-05
PRK0093999 PRK00939, PRK00939, translation initiation factor 2e-05
TIGR01158101 TIGR01158, SUI1_rel, translation initation factor 2e-05
TIGR01160110 TIGR01160, SUI1_MOF2, translation initiation facto 1e-04
cd1156776 cd11567, YciH_like, Homologs of eIF1/SUI1 includin 1e-04
COG2016161 COG2016, COG2016, Predicted RNA-binding protein (c 2e-04
TIGR03684150 TIGR03684, arCOG00985, arCOG04150 universal archae 3e-04
>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins Back     alignment and domain information 
 Score =  124 bits (314), Expect = 1e-34
 Identities = 51/84 (60%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 428 IQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPG-KKGQEVLIQG 486
           I I TERRQGNKK+T +SGLE+F +DPE  A ELQKK A ST+V+ LPG KKG EV +QG
Sbjct: 2   IDITTERRQGNKKVTLISGLESFGIDPEEFAKELQKKCAASTSVSPLPGKKKGVEVQVQG 61

Query: 487 GVIADVAKHLVEQFGIPKRYIEVL 510
             +  VAK L E++G+PK+YI+ L
Sbjct: 62  NQVKFVAKLLTEKYGVPKKYIDGL 85

eIF2D translation initiation factor (also known as ligatin) is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 85
>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1 Back     alignment and domain information
>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins Back     alignment and domain information
>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related proteins Back     alignment and domain information
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1 Back     alignment and domain information
>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed Back     alignment and domain information
>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative, prokaryotic Back     alignment and domain information
>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1, eukaryotic Back     alignment and domain information
>gnl|CDD|211319 cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia coli YciH Back     alignment and domain information
>gnl|CDD|224927 COG2016, COG2016, Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234310 TIGR03684, arCOG00985, arCOG04150 universal archaeal PUA-domain protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 516
KOG2522560 consensus Filamentous baseplate protein Ligatin, c 100.0
PF0125383 SUI1: Translation initiation factor SUI1; InterPro 99.86
TIGR01159173 DRP1 density-regulated protein DRP1. This protein 99.8
COG0023104 SUI1 Translation initiation factor 1 (eIF-1/SUI1) 99.78
cd0047477 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac 99.75
PRK0093999 translation initiation factor Sui1; Reviewed 99.73
TIGR01158101 SUI1_rel translation initation factor SUI1, putati 99.66
TIGR01160110 SUI1_MOF2 translation initiation factor SUI1, euka 99.66
KOG3239193 consensus Density-regulated protein related to tra 99.57
KOG1770112 consensus Translation initiation factor 1 (eIF-1/S 99.53
COG2016161 Predicted RNA-binding protein (contains PUA domain 99.51
PRK07451115 translation initiation factor Sui1; Validated 99.44
PRK06824118 translation initiation factor Sui1; Validated 99.42
PRK14560160 putative RNA-binding protein; Provisional 99.41
TIGR03684150 arCOG00985 arCOG04150 universal archaeal PUA-domai 99.39
KOG2523181 consensus Predicted RNA-binding protein with PUA d 99.38
PRK09019108 translation initiation factor Sui1; Validated 99.37
TIGR00451107 unchar_dom_2 uncharacterized domain 2. This unchar 99.03
smart0015177 SWIB SWI complex, BAF60b domains. 98.36
PF0147274 PUA: PUA domain; InterPro: IPR002478 The PUA (Pseu 98.25
PF0220176 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SW 97.29
PRK13795636 hypothetical protein; Provisional 96.88
smart0035977 PUA Putative RNA-binding Domain in PseudoUridine s 96.83
PF0504687 Img2: Mitochondrial large subunit ribosomal protei 96.81
PRK13794479 hypothetical protein; Provisional 96.65
TIGR00425322 CBF5 rRNA pseudouridine synthase, putative. This f 96.14
COG5531237 SWIB-domain-containing proteins implicated in chro 95.39
KOG1946240 consensus RNA polymerase I transcription factor UA 94.76
PRK13534639 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr 94.74
PRK14724987 DNA topoisomerase III; Provisional 91.18
PRK03988138 translation initiation factor IF-2 subunit beta; V 90.44
TIGR00311133 aIF-2beta translation initiation factor aIF-2, bet 89.9
PRK05429372 gamma-glutamyl kinase; Provisional 89.86
KOG2570420 consensus SWI/SNF transcription activation complex 89.17
PF10357127 Kin17_mid: Domain of Kin17 curved DNA-binding prot 87.76
KOG4034169 consensus Uncharacterized conserved protein NOF (N 86.26
PRK12336201 translation initiation factor IF-2 subunit beta; P 83.24
smart00653110 eIF2B_5 domain present in translation initiation f 81.51
PRK04270300 H/ACA RNA-protein complex component Cbf5p; Reviewe 81.13
TIGR01027363 proB glutamate 5-kinase. Bacterial ProB proteins h 80.95
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-100  Score=780.78  Aligned_cols=447  Identities=37%  Similarity=0.534  Sum_probs=372.4

Q ss_pred             CCCccccCCCCCCCCCCCCeEEEEeCCCCCeEEEEEeecChHHHHhcCCcccEEEEEeeecccccccCCCCCCCCCCCcc
Q 010169            1 MFPGISIPADGLPSFLSGEPWAVKVPGNPAPIAVGSTTMSSTEALKAGLRGKALRITHYYRDLLWGSVEGHSVPNAGFLE   80 (516)
Q Consensus         1 M~PGvv~~~~~~~~~~~G~lVaV~~~~~~~pvAVG~~~~s~~e~~~~g~kGkaV~vlH~~gD~LW~~g~~~~~P~~~~~~   80 (516)
                      |+||.+.+..++|+|+.|++|||+..||.+|+|||++.||+++|.++|.|||||+|+|||.|+||+.|+..-+|+  |..
T Consensus       109 ~l~~~~m~ppg~p~~~~G~lcai~lpgn~ap~AiGc~~Msseem~v~GlkGkav~ilH~frD~Lw~sgp~~laPs--~~~  186 (560)
T KOG2522|consen  109 NLMISGMIPPGDPRCKIGTLCAIALPGNEAPLAIGCVEMSSEEMKVIGLKGKAVKILHHFRDGLWKSGPMKLAPS--FVL  186 (560)
T ss_pred             cccccccCCCCCcccccCceeeEecCCCcCceeeeeeecchHHHHHhccccceEEEEeehhhhhhhcCCCCCCCc--ccc
Confidence            677777666677999999999999999999999999999999999999999999999999999999997444442  111


Q ss_pred             cccccCccccccccccCcccccCCCCCcccCCCcCcccccCCCCCCCCCCCCcCCCCCccchhhccccccccccccc-CC
Q 010169           81 DVVVEDPAFLSTSQVSDSCEGAADSSNDQKNGEEGIIDADNANSEPNSTSATQDDFDGNIVEQVAADVGDLKLTENV-DA  159 (516)
Q Consensus        81 ~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  159 (516)
                      ...-.+..+.+.             +.+ +.++++++..                          .   ..++.++. ..
T Consensus       187 gs~eddn~i~~~-------------s~e-~seed~evh~--------------------------~---~~el~ed~st~  223 (560)
T KOG2522|consen  187 GSQEDDNNISSK-------------SIE-SSEEDKEVHK--------------------------E---QEELKEDSSTV  223 (560)
T ss_pred             cchhcccccchh-------------hhc-cchhhhhHHH--------------------------H---hhhccchhccc
Confidence            100000000000             000 0000000000                          0   00111111 11


Q ss_pred             CCCcccccCCChhhHHHHHHHHHHHHhHhcCCCCCCCCChhhhhhhcccCCCCCCCceeeeccccccHHHHHHHHHHCCc
Q 010169          160 GETNEEHHVLTTEDVDAYLDKCLLQALHTTVKDKDLPMPGSTLWSNHILPCRPSGITLDIKKSSHKKLTKWLQAKSSAGL  239 (516)
Q Consensus       160 ~~~~~~~~~~~~e~~D~~l~~all~al~~~~~~~~LP~~~S~f~s~~ilp~~P~g~~ldiKKSS~KKlskFLk~~~K~gl  239 (516)
                      +..++.++.+++|+||+||.+|||+||+++++..+|||++|+||++|||.|+|+|.+||||||||||++||||+|+++|+
T Consensus       224 e~n~ekqd~~t~e~vD~lLtrcll~aLk~r~k~~dLPi~~stf~~~hi~sc~P~gr~ldiKKts~KKlakfLQ~~~~egi  303 (560)
T KOG2522|consen  224 EENAEKQDHFTVEDVDYLLTRCLLYALKQRDKGLDLPISASTFISNHIMSCLPPGRHLDIKKTSWKKLAKFLQHFEKEGI  303 (560)
T ss_pred             ccchhhhcccCHhhHHHHHHHHHHHHhhhhcccccCCccHHHHHHhhhhccCCCcceeccchhhHHHHHHHHHHHhhccc
Confidence            22234456789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhccccceEEeeccCCCeeEEEEecCCCCcccccCcccCcccchhhhccccccCCCCCCcccEEEEE
Q 010169          240 FVLQLMLVFWLLIRRHLKSQISVKEDKYKKESMLFSVNRGHPDYLSFKPEKRPAEKASQAVDHAASDNIQPAKILEVTEV  319 (516)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~i~~KE~~~~g~~~I~~vn~~hp~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  319 (516)
                                          |++|  +++.+++|+++|++||++++|.|++...+.. .+......+.......+.|.+|
T Consensus       304 --------------------i~vK--~kg~e~~iv~vn~~hpe~ksFvppk~~~~~s-~~i~E~st~q~~~p~~~~i~~l  360 (560)
T KOG2522|consen  304 --------------------IKVK--GKGDELTIVGVNTDHPELKSFVPPKLGCKSS-TEIRESSTSQEKTPGMMYILTL  360 (560)
T ss_pred             --------------------eeec--ccCceeEEEEccCCCchhhccCCCcCCCccc-ccccccccccccCCCcceeeee
Confidence                                9999  7788999999999999999999998754221 1111111122334556899999


Q ss_pred             ecCCCCchhhhhhcCCCCCCCcCHHHHHHHHHHHHHhCCCCCCCCCCceecCHHHHHHHhccccccCCCCCcccchHhHH
Q 010169          320 YKPSVHVNPIFASVGADTGRLYTFSEACDVVFNYIEKENLVKPTAKSIVVLDPTLSDALFKGAIKKGTTYPTEIHKKDLG  399 (516)
Q Consensus       320 y~p~~~~~~~f~~~~~~~~~~yt~~eir~~l~~YI~~~~L~~~~~k~~V~LD~~L~~~l~~~~~~~g~~~~~~i~r~~l~  399 (516)
                      |+|+.....+|.++|.++++|||.+|||+++.+||++|||++++||++|+|||+|||+++++ .+.+..++..++|+.|.
T Consensus       361 Yk~~~~~~~Lf~evg~~kg~lyt~seir~~V~kYi~knnLad~~nKg~VrLDpILfd~~~k~-~K~~~a~~~~~pw~~l~  439 (560)
T KOG2522|consen  361 YKPFNLAKDLFKEVGLAKGTLYTSSEIRSAVSKYISKNNLADTKNKGKVRLDPILFDMVNKK-KKVLNASRIIAPWEILH  439 (560)
T ss_pred             eccchHHHHHHHhcCccccceeeHHHHHHHHHHHhhhhhccccccCCcEEeccHHHHHHHhh-hhccccccccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999976 44556778899999999


Q ss_pred             HHHHHccccceEeecCCc-cccccCCcceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCC
Q 010169          400 STFVNRMQAHHVVSRGSQ-SVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKK  478 (516)
Q Consensus       400 ~~~l~~m~~~~~i~~~~~-~~~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k  478 (516)
                      .+|+++|+++|+|.++|+ .+++||.+|+|.|.+|+|.|||+||+|+|||.|||||+.+|.+||++|+||+||.+.||.|
T Consensus       440 ~~~~~rmtp~yqi~~pdgepivkKgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~k  519 (560)
T KOG2522|consen  440 PLLTNRMTPFYQIFKPDGEPIVKKGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFK  519 (560)
T ss_pred             HHHHhcCCcceEEEcCCCceeeecCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCC
Confidence            999999999999988765 5899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEcCCcHHHHHHHHHHhcCCCCccEEEcccccCC
Q 010169          479 GQEVLIQGGVIADVAKHLVEQFGIPKRYIEVLDKTARK  516 (516)
Q Consensus       479 ~~eV~vQGd~~~~V~~~L~~~~gip~k~I~~~~k~kkk  516 (516)
                      +.||+|||+|++.|.++|.+.||||++||++++|++||
T Consensus       520 g~eVqvQGnqih~iadlL~k~ygipkK~I~gleka~Kk  557 (560)
T KOG2522|consen  520 GAEVQVQGNQIHSIADLLNKSYGIPKKWIDGLEKAKKK  557 (560)
T ss_pred             CceEEEecchhhHHHHHHHHhhCCCHHHHhHHHHhhcc
Confidence            99999999999999999999999999999999987765

>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation [] Back     alignment and domain information
>TIGR01159 DRP1 density-regulated protein DRP1 Back     alignment and domain information
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation Back     alignment and domain information
>PRK00939 translation initiation factor Sui1; Reviewed Back     alignment and domain information
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic Back     alignment and domain information
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic Back     alignment and domain information
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only] Back     alignment and domain information
>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07451 translation initiation factor Sui1; Validated Back     alignment and domain information
>PRK06824 translation initiation factor Sui1; Validated Back     alignment and domain information
>PRK14560 putative RNA-binding protein; Provisional Back     alignment and domain information
>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein Back     alignment and domain information
>KOG2523 consensus Predicted RNA-binding protein with PUA domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09019 translation initiation factor Sui1; Validated Back     alignment and domain information
>TIGR00451 unchar_dom_2 uncharacterized domain 2 Back     alignment and domain information
>smart00151 SWIB SWI complex, BAF60b domains Back     alignment and domain information
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found [] Back     alignment and domain information
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation [] Back     alignment and domain information
>PRK13795 hypothetical protein; Provisional Back     alignment and domain information
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Back     alignment and domain information
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK13794 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative Back     alignment and domain information
>COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1946 consensus RNA polymerase I transcription factor UAF [Transcription] Back     alignment and domain information
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>PRK14724 DNA topoisomerase III; Provisional Back     alignment and domain information
>PRK03988 translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information
>PRK05429 gamma-glutamyl kinase; Provisional Back     alignment and domain information
>KOG2570 consensus SWI/SNF transcription activation complex subunit [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins Back     alignment and domain information
>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown] Back     alignment and domain information
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed Back     alignment and domain information
>TIGR01027 proB glutamate 5-kinase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query516
2ogh_A108 Eukaryotic translation initiation factor EIF-1; al 3e-17
3r90_A188 Malignant T cell-amplified sequence 1; structural 2e-13
2if1_A126 EIF1, SUI1; translation initiation factor; NMR {Ho 3e-13
2cx0_A187 Hypothetical protein APE0525; PUA domain, structur 4e-12
3d79_A179 PUA domain, putative uncharacterized protein PH073 7e-12
2xzm_F101 EIF1; ribosome, translation; 3.93A {Tetrahymena th 7e-12
1q7h_A153 Conserved hypothetical protein; structural genomic 7e-09
1d1r_A116 Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Length = 108 Back     alignment and structure
 Score = 76.4 bits (188), Expect = 3e-17
 Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 422 KGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQE 481
                 I I  ++R G K +T + G+     D + +   L+K FAC+  + + P + G+ 
Sbjct: 20  TATSNYIHIRIQQRNGRKTLTTVQGVPEEY-DLKRILKVLKKDFACNGNIVKDP-EMGEI 77

Query: 482 VLIQGGVIADVAKHLVEQFGIPKRYIEV 509
           + +QG   A V + ++ Q G+ K+ I++
Sbjct: 78  IQLQGDQRAKVCEFMISQLGLQKKNIKI 105
>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens} Length = 188 Back     alignment and structure
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1 Length = 126 Back     alignment and structure
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A Length = 187 Back     alignment and structure
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii} Length = 179 Back     alignment and structure
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F Length = 101 Back     alignment and structure
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2 Length = 153 Back     alignment and structure
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1 Length = 116 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
2ogh_A108 Eukaryotic translation initiation factor EIF-1; al 99.82
2xzm_F101 EIF1; ribosome, translation; 3.93A {Tetrahymena th 99.82
2if1_A126 EIF1, SUI1; translation initiation factor; NMR {Ho 99.78
1d1r_A116 Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int 99.68
3r90_A188 Malignant T cell-amplified sequence 1; structural 99.54
1q7h_A153 Conserved hypothetical protein; structural genomic 99.28
3d79_A179 PUA domain, putative uncharacterized protein PH073 99.26
2cx0_A187 Hypothetical protein APE0525; PUA domain, structur 99.19
3zv0_C195 H/ACA ribonucleoprotein complex subunit 4; cell cy 98.58
2q07_A306 Uncharacterized protein AF0587; monomer, structura 98.21
1v32_A101 AT5G08430, hypothetical protein RAFL09-47-K03; SWI 97.56
1uhr_A93 SWI/SNF related, matrix associated, actin dependen 97.23
1v31_A93 Hypothetical protein RAFL11-05-P19; SWI/SNF comple 97.09
3u28_A400 H/ACA ribonucleoprotein complex subunit 4; pseudou 94.46
2p38_A166 Protein involved in ribosomal biogenesis; two alph 94.05
1iq8_A582 Archaeosine tRNA-guanine transglycosylase; (alpha/ 89.51
2j5v_A367 Glutamate 5-kinase; proline biosynthesis, gamma gl 81.54
2d74_B148 Translation initiation factor 2 beta subunit; prot 80.85
1sqw_A188 Saccharomyces cerevisiae NIP7P homolog; PUA, unkno 80.79
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
Probab=99.82  E-value=2.5e-20  Score=162.30  Aligned_cols=100  Identities=24%  Similarity=0.442  Sum_probs=87.2

Q ss_pred             ccccceEeecCCccccccCCcceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEE
Q 010169          405 RMQAHHVVSRGSQSVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLI  484 (516)
Q Consensus       405 ~m~~~~~i~~~~~~~~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~v  484 (516)
                      .+.||+..  ++   ..+|..++|+|++++|+|||.||+|+||+. ++|+++||++|+++||||+||.+.|+. +.+|+|
T Consensus         8 ~~dpf~~~--~~---~~~~~~~~V~Ir~~~R~g~K~VT~V~Gl~~-~~dlk~lak~lKkk~acggsV~~~~~~-g~~I~i   80 (108)
T 2ogh_A            8 SFDPFADT--GD---DETATSNYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEM-GEIIQL   80 (108)
T ss_dssp             CCCCCCCC--CC---CCCCCSCSEEEEEECCSSSCCEEEEECCCT-TSCHHHHHHHHHHHHCCCEEEECCTTS-SCEEEE
T ss_pred             CCCccccc--cc---cccCCCCeEEEEEEEccCCceEEEEeCCCc-chhHHHHHHHHHHHhcCceEEecCCCC-ceEEEE
Confidence            34566554  11   226888999999999999999999999997 999999999999999999999998885 789999


Q ss_pred             cCCcHHHHHHHHHHhcCCCCccEEEcc
Q 010169          485 QGGVIADVAKHLVEQFGIPKRYIEVLD  511 (516)
Q Consensus       485 QGd~~~~V~~~L~~~~gip~k~I~~~~  511 (516)
                      ||||++.|.++|.++..+|++||++..
T Consensus        81 QGD~r~~v~~~L~~~g~~~~~~I~vhg  107 (108)
T 2ogh_A           81 QGDQRAKVCEFMISQLGLQKKNIKIHG  107 (108)
T ss_dssp             ESSCHHHHHHHHHHHHTSCCSCEEECC
T ss_pred             cCCHHHHHHHHHHHcCCCCHHHEEEcC
Confidence            999999999999987666999999864
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F Back     alignment and structure
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1 Back     alignment and structure
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1 Back     alignment and structure
>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens} Back     alignment and structure
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2 Back     alignment and structure
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii} Back     alignment and structure
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A Back     alignment and structure
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5 Back     alignment and structure
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Back     alignment and structure
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Back     alignment and structure
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Back     alignment and structure
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A Back     alignment and structure
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi} Back     alignment and structure
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A Back     alignment and structure
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Back     alignment and structure
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Back     alignment and structure
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 516
d2if1a_126 d.64.1.1 (A:) Eukaryotic translation initiation fa 1e-14
d1d1ra_83 d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]} 2e-11
d2cx1a193 b.122.1.1 (A:91-183) Hypothetical protein APE0525, 3e-07
d1q7ha185 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, 3e-06
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (167), Expect = 1e-14
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 418 SVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGK 477
            ++  G    I I  ++R G K +T + G+     D + L    +KKFAC+ TV E P +
Sbjct: 34  DLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDY-DKKKLVKAFKKKFACNGTVIEHP-E 91

Query: 478 KGQEVLIQGGVIADVAKHLVEQFGIPKRYIEV 509
            G+ + +QG    ++ + LVE        ++V
Sbjct: 92  YGEVIQLQGDQRKNICQFLVEIGLAKDDQLKV 123
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]} Length = 83 Back     information, alignment and structure
>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525, C-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 93 Back     information, alignment and structure
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 85 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query516
d2if1a_126 Eukaryotic translation initiation factor eIF-1 (SU 99.78
d1d1ra_83 YciH {Escherichia coli [TaxId: 562]} 99.6
d2cx1a193 Hypothetical protein APE0525, C-terminal domain {A 99.49
d1q7ha185 Hypothetical protein Ta1423, C-terminal domain {Ar 99.35
d2apoa185 Pseudouridine synthase II TruB, C-terminal domain 98.29
d2ey4a184 Pseudouridine synthase II TruB, C-terminal domain 98.14
d1iq8a377 Archaeosine tRNA-guanine transglycosylase, C3 doma 98.02
d2q07a168 Uncharacterized protein AF0587 {Archaeoglobus fulg 98.02
d1v32a_101 Hypothetical protein AT5G08430 (rafl09-47-k03) {Th 97.59
d1r3ea181 Pseudouridine synthase II TruB, C-terminal domain 97.4
d1uhra_93 SWI/SNF related regulator of chromatin (BRG1-assoc 97.34
d1v31a_93 Hypothetical protein AT5G14170 (rafl11-05-p19) {Th 97.23
d2axia185 MDM2 {Human (Homo sapiens) [TaxId: 9606]} 88.21
d1ttva_107 MDM2 {African clawed frog (Xenopus laevis) [TaxId: 87.49
d1neea198 Translation initiation factor 2 beta, aIF2beta, N- 84.64
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.3e-20  Score=161.11  Aligned_cols=91  Identities=29%  Similarity=0.425  Sum_probs=82.4

Q ss_pred             cccccCCcceEEEEEEEecCCccceEEeccCCCCCCHHHHHHHHhhhcccceEEecCCCCCCcEEEEcCCcHHHHHHHHH
Q 010169          418 SVVRKGALKTIQIVTERRQGNKKMTKLSGLETFLMDPEALASELQKKFACSTTVAELPGKKGQEVLIQGGVIADVAKHLV  497 (516)
Q Consensus       418 ~~~kkG~~~~I~I~~e~R~g~K~VT~V~gLe~f~id~~~lak~l~k~~a~s~sv~~~~g~k~~eV~vQGd~~~~V~~~L~  497 (516)
                      ...++|...+|+|++++|+|||.||+|+||+ |++|+++||++|+++||||+||.+.++. +.+|+|||||++.|.+||.
T Consensus        34 ~~~~~~~~~~I~I~~ekR~G~K~VT~I~Gl~-~~~dlk~laK~lKk~~acggSVk~~~~~-~~~I~IQGD~r~~v~~~L~  111 (126)
T d2if1a_          34 DLLPAGTEDYIHIRIQQRNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEY-GEVIQLQGDQRKNICQFLV  111 (126)
T ss_dssp             SCCSCSCTTCEECCCCCSSSSCCBCEEBSCC-TTSCHHHHHTTHHHHTCCCEEEECCTTT-SSEEEESBCCHHHHHHHHH
T ss_pred             ccCCCCCcceEEEEEEecCCCCCeEEEECCC-CcccHHHHHHHHHHhcCCCceEEeCCCC-CcEEEEcccHHHHHHHHHH
Confidence            4677899999999999999999999999998 8999999999999999999999987654 5899999999999999998


Q ss_pred             HhcCCCCccEEEc
Q 010169          498 EQFGIPKRYIEVL  510 (516)
Q Consensus       498 ~~~gip~k~I~~~  510 (516)
                      ++..+++.+|.+.
T Consensus       112 ~~g~~~k~~I~vH  124 (126)
T d2if1a_         112 EIGLAKDDQLKVH  124 (126)
T ss_dssp             HHTSSCTTTEECC
T ss_pred             HcCCCccccEEec
Confidence            8766688888764
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525, C-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure