Citrus Sinensis ID: 010207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-----
Protein Sequence
MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRFANATLP
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccHHHHHcccccccccccHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEccHHccccccccccHccccccccHHcccccccccccccHHHHcccHcccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHEEEccccccHcccHHHHHHHHHHHHHccEEEEEEEEEcccccEcccccccccccccccccccccccccccHHHHccccc
Coil and Loop (DISEMBL)
mgvelpidhaeshemedvnisdLELVYHVREALtsvqsgdndnYNQLVAVMHLsgrldpdnRALLETSLKALSGAVSYIDISHHESLLVSIFGmsmwnydpDVMDALKGLIISLAASNGKYVDSCLTMLvsnftppsyfldklkephglerkhQVLSRVHAALKSIFdlvplaptrllpivvqrmptvhnkhERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLdmeigwddilhddfsKGIFEMELEDVEEAADDaeqvgdelpsgslsrksLSGNLIAELLDSLMVLTFEhlescegtgrLIEFVMFYACaldpencglrFATMLADVfvsglyppltrMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNilggdinpkahRVFYSGCQAIMYVLCFRMrsimdiprlksqLLLMPLETvlkhdlnplkvclPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAfgglerldmffpfdpcllkksdrfanatlp
Flexible Loop (DISEMBL)
mgvelpidhaeshemedvNISDLELVYHVREALtsvqsgdndnYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVqrmptvhnkherLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVgdelpsgslsrksLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRFANATLP
Low Complexity Region (SEG)
MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFemeledveeaaddaeqvgdeLPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRFANATLP
Disordered region (IsUnstruct)
*****************VNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMEL****************************GNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLK***********
Disordered Region (DISOPRED)
***********************ELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRL*PDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELED******************SLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFV*****************RLDMFFPFDPCLLKKSDRFANATLP
Disordered Region (DISEMBL)
MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRFANATLP
Disordered Region (DISPRO)
****************DVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDD*****************************DELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESEL**AFGGLERLDMFFPFDPCLLKKSDRFAN*TLP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSxxxxxxxxxxxxxxxxxxxxxGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRFANATLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	515	2.2.26 [Sep-21-2011]
Q5R4N9	650	RNA polymerase I-specific	yes	no	0.860	0.681	0.250	3e-29
B2RS91	656	RNA polymerase I-specific	yes	no	0.770	0.605	0.250	8e-29
Q9NYV6	651	RNA polymerase I-specific	yes	no	0.871	0.689	0.247	1e-28
Q10110	599	RNA polymerase I-specific	yes	no	0.365	0.313	0.317	2e-15
Q2M238	152	Putative RRN3-like protei	no	no	0.221	0.75	0.373	1e-12
P36070	627	RNA polymerase I-specific	yes	no	0.462	0.379	0.236	3e-07
P48322	654	Uncharacterized protein C	yes	no	0.366	0.288	0.251	3e-06

>sp|Q5R4N9|RRN3_PONAB RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii GN=RRN3 PE=2 SV=1

 Score =  130 bits (326), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 139/555 (25%), Positives = 226/555 (40%), Gaps = 112/555 (20%)

Query: 29  VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
           V E L   + G+ +++  L   +     LDPD +   + + L     +V Y+     +  
Sbjct: 56  VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIISWLLEFRSSVMYLTKDFEQ-- 108

Query: 88  LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
           L+SI     W     V++     + +L ++   ++  CL M+ S+F PP   + +     
Sbjct: 109 LISIILRLPWLKSQTVVEEYLAFLANLVSAQTVFLRPCLGMIASHFVPPRVIIKEGDVDV 168

Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
                            H AL+ I   VP  P  L+PI+V++ P V      L+    Y+
Sbjct: 169 SDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 225

Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAA 262
            N L++  S     +R  +L  ++++L+ LD+     DI              ED EE A
Sbjct: 226 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDI--------------EDAEETA 269

Query: 263 -------DDAEQVGDELPSGSLSRKSLSG--------NLIAELLDSLMVLTFEHLES-CE 306
                  D  E + +         ++ +G        + +AE LD LM L   +++  C 
Sbjct: 270 TQTCGGTDSTEGLFNMDEDEETEHETKAGPERLDQMVHPVAECLDILMSLVLSYMKDVCY 329

Query: 307 GTGRL----------------------------IEFVMFYACALDPENCGLRFATMLADV 338
             G++                            ++F MFY C+         F    A+ 
Sbjct: 330 VDGQVDNGKTKDLYRDLINIFDKLLLSTHASCHVQFFMFYLCS---------FKLGFAEA 380

Query: 339 FVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILG 390
           F+  L+        P + R +A +Y+ SFL+RA+F+    + S L  LV+W   Y N   
Sbjct: 381 FLEHLWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVRSCLDLLVNWLHIYLN--N 438

Query: 391 GDINPKA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP---LETVLKHD 441
            D   KA      H  FYS CQA+ Y   FR + ++    LK  L  +     E ++   
Sbjct: 439 QDSGTKAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFEWIVMSQ 497

Query: 442 LNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDM 494
           LNPLK+CLPSVV+ F   +   +L         N+     + R+  G +        LD 
Sbjct: 498 LNPLKICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDT 557

Query: 495 FFPFDPCLLKKSDRF 509
           FFPFDPC+LK+S +F
Sbjct: 558 FFPFDPCVLKRSKKF 572

Required for efficient transcription initiation by RNA polymerase I. Required for the formation of the competent preinitiation complex (PIC). Dissociates from pol I as a consequence of transcription. In vitro, cannot activate transcription in a subsequent transcription reaction.
Pongo abelii (taxid: 9601)

>sp|B2RS91|RRN3_MOUSE RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus GN=Rrn3 PE=1 SV=1

 Score =  129 bits (323), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 210/495 (42%), Gaps = 98/495 (19%)

Query: 85  ESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDK-- 142
           E L+  I  +   N    V++     + +L ++   ++  CL+M+ S+F PP   + +  
Sbjct: 105 EQLINIILRLPWLNRSQRVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIVKEGG 164

Query: 143 ---LKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIV 199
                     +    +    H AL+ I   VP  P  L+PI+V++ P V      L+   
Sbjct: 165 IDVSDSDDEDDNLPAIFDTCHRALQIITRYVPSTPWFLMPILVEKFPFVRKSERTLE--- 221

Query: 200 VYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILH-----------DDFSK 248
            Y+ N L++  S     +R  +L  V+++L+ LD+ +   DI              D ++
Sbjct: 222 CYVHNLLRI--SLYFPTLRREILELVIEKLLKLDVSVSRQDIEDAEEKAAQTCGGTDTTE 279

Query: 249 GIFEMELEDVEEAADDAEQVGDELPS----------------------------GSLSR- 279
           G+F M   D +E  D  ++   E P+                            G +   
Sbjct: 280 GLFNM---DEDEDTDPEKKADQEQPNQMAHPTAERLDVLLCLLLSYIEDVCRVHGKIDNN 336

Query: 280 --KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLAD 337
             K L  +LI+ + D L++ T     SC      ++F MF+ C+         F    A+
Sbjct: 337 KTKDLYRDLIS-IFDKLLLPTHA---SCH-----VQFFMFFLCS---------FKLGFAE 378

Query: 338 VFVSGLY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNIL 389
            F+  L+        P + R +A +Y+ SFL+RA+F+    + + L  LV+W   Y  + 
Sbjct: 379 AFLEHLWKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKTCLDLLVNWLHMY--LT 436

Query: 390 GGDINPKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHD 441
             D   KA      H  FYS CQA+ Y + FR + ++  ++ +    L  +  E ++   
Sbjct: 437 NQDSGTKAFCDVALHGPFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQ 496

Query: 442 LNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDM 494
           LNPLK+CLP VV+ F   +   +L         N      + R+  G +        LD 
Sbjct: 497 LNPLKICLPQVVNFFAAITNKYQLVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDT 556

Query: 495 FFPFDPCLLKKSDRF 509
           FFPFDPC+LK+S +F
Sbjct: 557 FFPFDPCVLKRSKKF 571

Required for efficient transcription initiation by RNA polymerase I. Required for the formation of the competent preinitiation complex (PIC). Dissociates from pol I as a consequence of transcription. In vitro, cannot activate transcription in a subsequent transcription reaction.

Mus musculus (taxid: 10090)

>sp|Q9NYV6|RRN3_HUMAN RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens GN=RRN3 PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 136/550 (24%), Positives = 227/550 (41%), Gaps = 101/550 (18%)

Query: 29  VREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRA-LLETSLKALSGAVSYIDISHHESL 87
           V E L   + G+ +++  L   +     LDPD +   +   L     ++ Y+     E L
Sbjct: 56  VTEVLLKYKKGETNDFELLKNQL-----LDPDIKDDQIINWLLEFRSSIMYL-TKDFEQL 109

Query: 88  LVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPH 147
           +  I  +   N    V++     + +L ++   ++  CL+M+ S+F PP   + +     
Sbjct: 110 ISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGDVDV 169

Query: 148 GLERKHQV-----LSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKHERLKMIVVYM 202
                            H AL+ I   VP  P  L+PI+V++ P V      L+    Y+
Sbjct: 170 SDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLE---CYV 226

Query: 203 ENTLKLESSAMGELVRSTLLMAVVDRLIDLDM-----------EIGWDDILHDDFSKGIF 251
            N L++  S     +R  +L  ++++L+ LD+           E         D ++G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLF 284

Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLES-CEGTGR 310
            M+ ++  E    A   G E       R     + +AE LD LM L   +++  C   G+
Sbjct: 285 NMDEDEETEHETKA---GPE-------RLDQMVHPVAERLDILMSLVLSYMKDVCYVDGK 334

Query: 311 L----------------------------IEFVMFYACALDPENCGLRFATMLADVFVSG 342
           +                            ++F MFY C+         F    A+ F+  
Sbjct: 335 VDNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCS---------FKLGFAEAFLEH 385

Query: 343 LY--------PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
           L+        P + R +A +Y+ SFL+RA+F+    + S L  LV+W   Y N    D  
Sbjct: 386 LWKKLQDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSG 443

Query: 395 PKA------HRVFYSGCQAIMYVLCFRMRSIM--DIPRLKSQLLLMPLETVLKHDLNPLK 446
            KA      H  FYS CQA+ Y   FR + ++  ++      L  +  E ++   LNPLK
Sbjct: 444 TKAFCDVALHGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLK 503

Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER-------LDMFFPFD 499
           +CLPSVV+ F   +   +L         N+     + R+  G +        LD FFPFD
Sbjct: 504 ICLPSVVNFFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFD 563

Query: 500 PCLLKKSDRF 509
           PC+LK+S +F
Sbjct: 564 PCVLKRSKKF 573

Required for efficient transcription initiation by RNA polymerase I. Required for the formation of the competent preinitiation complex (PIC). Dissociates from pol I as a consequence of transcription. In vitro, cannot activate transcription in a subsequent transcription reaction.

Homo sapiens (taxid: 9606)

>sp|Q10110|RRN3_SCHPO RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrn3 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 109/211 (51%), Gaps = 23/211 (10%)

Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPC 369
           R  +F++F+A  LDPE   + F  +L +V +    P   R+S   Y+ S+++RA+ L   
Sbjct: 358 RYTQFLIFWASQLDPEFTDI-FLGVLTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKN 416

Query: 370 ---FIVSLLKRLVDWCLEYC-NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSI------ 419
               IV+++ R V+  L+ C N L  D+  K H VFY+  Q+I Y+ CFR R +      
Sbjct: 417 TIQIIVNMMTRWVEAYLDQCENELSDDLLSK-HSVFYAINQSIFYIFCFRWRELCVSDES 475

Query: 420 --MDIPRLKSQLLLMPL--ETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
             M+ PR    +  + +   +VL   LNPL+ C P++V   LQ +K A        +V++
Sbjct: 476 ESME-PRPNEWIPGLEILHRSVLSR-LNPLRYCSPNIV---LQFAKVANHLNF--MYVYS 528

Query: 476 DLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
            + ++       G + +D +FPFDP  L KS
Sbjct: 529 IIEQNRKGIFREGFDTMDAYFPFDPYRLTKS 559

Required for efficient transcription initiation by RNA polymerase I.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2M238|RN3P1_HUMAN Putative RRN3-like protein RRN3P1 OS=Homo sapiens GN=RRN3P1 PE=5 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 12/126 (9%)

Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA------H 398
           P + R +A +Y+ SFL+RA+F+S   +   L  LV+W   Y N    D   KA      H
Sbjct: 21  PAIIRQAAGNYIGSFLARAKFISLITVKPCLDLLVNWLHIYLN--NQDSGTKAFCDVALH 78

Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLL---MPLETVLKHDLNPLKVCLPSVVSE 455
             FYS CQA+ Y   FR + ++    LK  L     +  E ++   LNPLK+CLPSVV+ 
Sbjct: 79  GPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYPQSLNFERIVMSQLNPLKICLPSVVNF 137

Query: 456 FLQQSK 461
           F   +K
Sbjct: 138 FAAITK 143

Homo sapiens (taxid: 9606)

>sp|P36070|RRN3_YEAST RNA polymerase I-specific transcription initiation factor RRN3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRN3 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 67/305 (21%)

Query: 257 DVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVL---------TFEHLESCEG 307
           D+ E  D  E+   EL  G    K LS  L     DS++ L         T E LES EG
Sbjct: 306 DIIEGMDGTEEYNVELTQGI---KELSTKL-----DSILTLVSTHVEEQVTPESLESGEG 357

Query: 308 TG-------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLT 348
            G                   R I+++MF+      E     F   L D+  +       
Sbjct: 358 VGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEK 416

Query: 349 RMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA----HRVFYSG 404
           ++ ++ YL S+++RA+ LS   I+ +   L  W   Y      +++ +      + FY+ 
Sbjct: 417 KIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAA 476

Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV---SEFLQQSK 461
            QA+ Y+ CFR     D        L    + ++    NPLK C  +V+   +   QQ  
Sbjct: 477 FQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQES 536

Query: 462 AARLFTVSETFVFNDLLESELSRAFGGLER----------------------LDMFFPFD 499
            A  F++ E    N+ L   + +A    +                       L  +FP+D
Sbjct: 537 VAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYD 595

Query: 500 PCLLK 504
           P  LK
Sbjct: 596 PLFLK 600

Required for efficient transcription initiation by RNA polymerase I. Interacts with Pol I in the absence of template DNA and stimulates recruitment of Pol I, but does not remain as part of stable preinitiation complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P48322|YPJ1_CAEEL Uncharacterized protein C36E8.1 OS=Caenorhabditis elegans GN=C36E8.1 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 18/207 (8%)

Query: 310 RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMS--AVSYLASFLSRARFLS 367
           + + F+  Y C+L  E        +          P   R S  A SYLA+FL+RA+++ 
Sbjct: 371 QYVSFIWLYFCSLSQEYEKKMLEHLWQVTIRMPRAPADARKSQGAASYLAAFLARAKYVK 430

Query: 368 PCFIVSLLKRLVDWCLEYCNILG---GDINP--KAHRVFYSGCQAIMYVLCFRMRSIMDI 422
                + L+ +  W   Y +  G     I P  + H  FYS  QA   V  FR +  +  
Sbjct: 431 KSTAFTWLEEVYIWLRHYVDQFGSGSSQILPGLQRHGTFYSVSQAFFLVFAFRYKEFVKN 490

Query: 423 PRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESEL 482
             +   +    +  V+   L PLK     V   F   +++ +L   +           E+
Sbjct: 491 KDMLETIRRWGVGRVVHSPLEPLKYVSKPVARCFSAITRSLQLVYCNHIIPIE-----EV 545

Query: 483 SRAFGGLERLDMFFPFDPCLLKKSDRF 509
            R F      D  FPFD   LK+S +F
Sbjct: 546 QRPF------DDMFPFDCYHLKESSKF 566

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	515
296088515	607	unnamed protein product [Vitis vinifera]	0.982	0.833	0.684	0.0
359477042	636	PREDICTED: RNA polymerase I-specific tra	0.988	0.800	0.678	0.0
449480195	625	PREDICTED: RNA polymerase I-specific tra	0.980	0.808	0.629	1e-180
449432152	626	PREDICTED: RNA polymerase I-specific tra	0.980	0.806	0.629	1e-180
356531325	628	PREDICTED: RNA polymerase I-specific tra	0.966	0.792	0.594	1e-179
356559191	627	PREDICTED: RNA polymerase I-specific tra	0.966	0.794	0.594	1e-178
255566898	640	transcription initiation factor ia, puta	0.982	0.790	0.612	1e-175
224084016	635	predicted protein [Populus trichocarpa]	0.980	0.795	0.577	1e-162
297826945	614	RNA polymerase I specific transcription	0.945	0.793	0.55	1e-159
30686199	613	RNA polymerase I specific transcription	0.945	0.794	0.542	1e-156

>gi|296088515|emb|CBI37506.3| unnamed protein product [Vitis vinifera]

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/532 (68%), Positives = 423/532 (79%), Gaps = 26/532 (4%)

Query: 1   MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPD 60
           MGVEL  D A  HEME+VN SD ELVYHVR AL SV  GD+D+Y+QL+ V+H   RL PD
Sbjct: 1   MGVELATDRAGFHEMEEVNFSDSELVYHVRHALQSVPLGDSDSYDQLIGVLHHKERLAPD 60

Query: 61  NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGK 120
             ALL TSLKALSGAVS ID+ HH+SLL SIFGMS+WNY PDVMDAL  LI+SLAAS+G 
Sbjct: 61  EVALLVTSLKALSGAVSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLELILSLAASSGN 120

Query: 121 YVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPI 180
           Y+D  L MLVSNF PP   LD LK+P GL RK QVLSRVH+ LK I DLVPLAP+RL+PI
Sbjct: 121 YLDCSLDMLVSNFMPPYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADLVPLAPSRLVPI 180

Query: 181 VVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDD 240
           V+QRMP V  K     +I++Y+EN L+LE  A+ ELV + +L+A++DRL+DLD+EI W++
Sbjct: 181 VIQRMPNVFTKE---PLIMIYVENMLRLEGGAIRELVGNMMLVALMDRLVDLDVEIAWEE 237

Query: 241 ILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFE 300
           +L DD SKGIFEMELED+EE ADD E  G EL  GSLSRKSL GNLIAE LDSLMVLTFE
Sbjct: 238 VLQDDCSKGIFEMELEDMEEPADDVENDGGELHRGSLSRKSLGGNLIAEKLDSLMVLTFE 297

Query: 301 HLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFATMLAD 337
           HLESCE  GRLIE                       FVMFYACALDPENCG+RFA +LAD
Sbjct: 298 HLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQFVMFYACALDPENCGVRFARVLAD 357

Query: 338 VFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
            FV   +PPL RMSAV+YLAS+LSR +FL+  F+ ++L+RLV WCLEYC I  GDINPKA
Sbjct: 358 FFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVWCLEYCKIHDGDINPKA 417

Query: 398 HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFL 457
           H+VFYSGCQAIMYVLCFRMRS+M++P L+SQLLL+PLET+LKH L+PLKVCLPS+V EFL
Sbjct: 418 HQVFYSGCQAIMYVLCFRMRSMMNVPHLRSQLLLLPLETILKHPLSPLKVCLPSIVEEFL 477

Query: 458 QQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
           +Q+KAARLFTVSETF+F+DLLESELSRAFGG+ERLDMFFPFDPCLLKK DRF
Sbjct: 478 RQAKAARLFTVSETFIFSDLLESELSRAFGGIERLDMFFPFDPCLLKKCDRF 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477042|ref|XP_002263973.2| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Vitis vinifera]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/538 (67%), Positives = 422/538 (78%), Gaps = 29/538 (5%)

Query: 1   MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPD 60
           MGVEL  D A  HEME+VN SD ELVYHVR AL SV  GD+D+Y+QL+ V+H   RL PD
Sbjct: 1   MGVELATDRAGFHEMEEVNFSDSELVYHVRHALQSVPLGDSDSYDQLIGVLHHKERLAPD 60

Query: 61  NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGK 120
             ALL TSLKALSGAVS ID+ HH+SLL SIFGMS+WNY PDVMDAL  LI+SLAAS+G 
Sbjct: 61  EVALLVTSLKALSGAVSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLELILSLAASSGN 120

Query: 121 YVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPI 180
           Y+D  L MLVSNF PP   LD LK+P GL RK QVLSRVH+ LK I DLVPLAP+RL+PI
Sbjct: 121 YLDCSLDMLVSNFMPPYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADLVPLAPSRLVPI 180

Query: 181 VVQRMPTVHNKH------ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDM 234
           V+QRMP V  K         L  I +Y+EN L+LE  A+ ELV + +L+A++DRL+DLD+
Sbjct: 181 VIQRMPNVFTKEPVSSICSTLFRIQIYVENMLRLEGGAIRELVGNMMLVALMDRLVDLDV 240

Query: 235 EIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSL 294
           EI W+++L DD SKGIFEMELED+EE ADD E  G EL  GSLSRKSL GNLIAE LDSL
Sbjct: 241 EIAWEEVLQDDCSKGIFEMELEDMEEPADDVENDGGELHRGSLSRKSLGGNLIAEKLDSL 300

Query: 295 MVLTFEHLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRF 331
           MVLTFEHLESCE  GRLIE                       FVMFYACALDPENCG+RF
Sbjct: 301 MVLTFEHLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQFVMFYACALDPENCGVRF 360

Query: 332 ATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG 391
           A +LAD FV   +PPL RMSAV+YLAS+LSR +FL+  F+ ++L+RLV WCLEYC I  G
Sbjct: 361 ARVLADFFVCSTFPPLNRMSAVAYLASYLSRGKFLTASFVANILERLVVWCLEYCKIHDG 420

Query: 392 DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPS 451
           DINPKAH+VFYSGCQAIMYVLCFRMRS+M++P L+SQLLL+PLET+LKH L+PLKVCLPS
Sbjct: 421 DINPKAHQVFYSGCQAIMYVLCFRMRSMMNVPHLRSQLLLLPLETILKHPLSPLKVCLPS 480

Query: 452 VVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
           +V EFL+Q+KAARLFTVSETF+F+DLLESELSRAFGG+ERLDMFFPFDPCLLKK DRF
Sbjct: 481 IVEEFLRQAKAARLFTVSETFIFSDLLESELSRAFGGIERLDMFFPFDPCLLKKCDRF 538

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480195|ref|XP_004155826.1| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Cucumis sativus]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 335/532 (62%), Positives = 392/532 (73%), Gaps = 27/532 (5%)

Query: 1   MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPD 60
           MG EL  + A+ H MEDVN++D +LV  +R  L+SV  GD D YNQLV V+H   RL PD
Sbjct: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60

Query: 61  NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGK 120
             ALL T LKALSGAVS IDI  HESLL +IF MS+W+Y  +VMDAL  LIISLA SNGK
Sbjct: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120

Query: 121 YVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPI 180
           YVDSCL MLV+NF PP+ ++D LK+PHGL RK +VLSRVH ALK I DLVPLAP RL   
Sbjct: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180

Query: 181 VVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDD 240
           VV +M  V        +  +Y+EN L+LE  A+ E V   +L A+VD+L+DLD+EIGWDD
Sbjct: 181 VVHKMQRVFFNE---SLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDD 237

Query: 241 ILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFE 300
           IL DDFSKGIFEMELED ++  DD  +   ELP   LSR+SL GN+IAE LDSL+VLTFE
Sbjct: 238 ILQDDFSKGIFEMELEDDDDTTDDINEDSSELPR-ELSRRSLGGNVIAETLDSLIVLTFE 296

Query: 301 HLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFATMLAD 337
           HLESCE  GRL E                       F++FYAC+LDPE CG RFA  LAD
Sbjct: 297 HLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLAD 356

Query: 338 VFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
           +FVS   PPL RMSAVSYLASFLSR +FL+   + ++LKRLVDWCLEY   L  D NPKA
Sbjct: 357 MFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKA 416

Query: 398 HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFL 457
           H+VFYSGCQAIMYVLCFRMRSI++IPRLKSQLLLMP+  +L H L+PLKVCLPS+V EFL
Sbjct: 417 HKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFL 476

Query: 458 QQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
           +Q+K A LFT SE F+FN LLES+ SR+FGGLERLDMFFPFDPCLLKK DR+
Sbjct: 477 RQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRY 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432152|ref|XP_004133864.1| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Cucumis sativus]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 335/532 (62%), Positives = 392/532 (73%), Gaps = 27/532 (5%)

Query: 1   MGVELPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPD 60
           MG EL  + A+ H MEDVN++D +LV  +R  L+SV  GD D YNQLV V+H   RL PD
Sbjct: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60

Query: 61  NRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGK 120
             ALL T LKALSGAVS IDI  HESLL +IF MS+W+Y  +VMDAL  LIISLA SNGK
Sbjct: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120

Query: 121 YVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPI 180
           YVDSCL MLV+NF PP+ ++D LK+PHGL RK +VLSRVH ALK I DLVPLAP RL   
Sbjct: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180

Query: 181 VVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDD 240
           VV +M  V        +  +Y+EN L+LE  A+ E V   +L A+VD+L+DLD+EIGWDD
Sbjct: 181 VVHKMQRVFFNE---SLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDD 237

Query: 241 ILHDDFSKGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFE 300
           IL DDFSKGIFEMELED ++  DD  +   ELP   LSR+SL GN+IAE LDSL+VLTFE
Sbjct: 238 ILQDDFSKGIFEMELEDDDDTTDDINEDSSELPR-ELSRRSLGGNVIAETLDSLIVLTFE 296

Query: 301 HLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFATMLAD 337
           HLESCE  GRL E                       F++FYAC+LDPE CG RFA  LAD
Sbjct: 297 HLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLAD 356

Query: 338 VFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA 397
           +FVS   PPL RMSAVSYLASFLSR +FL+   + ++LKRLVDWCLEY   L  D NPKA
Sbjct: 357 MFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKA 416

Query: 398 HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFL 457
           H+VFYSGCQAIMYVLCFRMRSI++IPRLKSQLLLMP+  +L H L+PLKVCLPS+V EFL
Sbjct: 417 HKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFL 476

Query: 458 QQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
           +Q+K A LFT SE F+FN LLES+ SR+FGGLERLDMFFPFDPCLLKK DR+
Sbjct: 477 RQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRY 528

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531325|ref|XP_003534228.1| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Glycine max]

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 312/525 (59%), Positives = 396/525 (75%), Gaps = 27/525 (5%)

Query: 8   DHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLET 67
           D  E  +ME+ + SD +LV+H R  L +V +GD +NY++LV  +H    L+PD  A+L T
Sbjct: 8   DKEEFSQMENNDFSDSQLVHHFRGVLVAVTTGDRENYDELVGYLHPKKHLNPDEVAILVT 67

Query: 68  SLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLT 127
           +LKALSGAVSYID  HHESLL ++  MS+WN   D+MDAL  LIISLA SNGKY+D CL 
Sbjct: 68  TLKALSGAVSYIDSVHHESLLFAVSRMSLWNCGIDIMDALLELIISLAVSNGKYIDWCLE 127

Query: 128 MLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPT 187
           MLV NF PP Y LD L++ +G++RK++VLSRVHAALK I DLVPLAP RL PIV+Q+MP+
Sbjct: 128 MLVKNFVPPFYLLDSLRQENGIDRKNKVLSRVHAALKEIADLVPLAPLRLSPIVIQKMPS 187

Query: 188 VHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFS 247
           V +K      IV+Y+EN L+LES A+GE V ST+L A+VDRL++LD+EIGWD IL +D +
Sbjct: 188 VFSKETE---IVMYVENMLRLESGALGETVGSTMLPALVDRLLELDVEIGWDGILQED-A 243

Query: 248 KGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEG 307
           KGIFEMELEDV E  D+ E     L S  L+RK+L GNL+ E LDSLMVL F HLESC+ 
Sbjct: 244 KGIFEMELEDVTEFTDEDENCDSMLSSELLNRKNLQGNLVVEKLDSLMVLAFLHLESCQN 303

Query: 308 TGRLIE-----------------------FVMFYACALDPENCGLRFATMLADVFVSGLY 344
           +GRL E                       FVMFYACALDPE CG++FA +LAD+F     
Sbjct: 304 SGRLAEVFNTLLASFQRTVLNAYKSKFTQFVMFYACALDPEGCGVKFAMVLADMFGGDAN 363

Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSG 404
           PP+TRMSAV+YLAS+L+RA+FLS   + S+++ LVDWC  YC     D+NP+AH+VFYSG
Sbjct: 364 PPITRMSAVAYLASYLTRAKFLSAALVTSIIQSLVDWCYAYCKFRDFDMNPRAHQVFYSG 423

Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAAR 464
           CQAIMY++CFRMRS+MD+PRLK QLL MP+E +LKH L+PLKVCLP+VV EFL+Q+KAA+
Sbjct: 424 CQAIMYIMCFRMRSLMDVPRLKLQLLNMPMEAILKHKLSPLKVCLPTVVVEFLRQAKAAQ 483

Query: 465 LFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
           LF  SE+FVF+D+LES+LS+AFGG++RLDMFFPFDPCLLK+S+ +
Sbjct: 484 LFMASESFVFDDMLESDLSKAFGGMDRLDMFFPFDPCLLKRSESY 528

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559191|ref|XP_003547884.1| PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Glycine max]

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 312/525 (59%), Positives = 398/525 (75%), Gaps = 27/525 (5%)

Query: 8   DHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLET 67
           +  E  +ME+ + SD +LV H R  L +V +GD +NY++LV  +H    L+PD  A+L T
Sbjct: 8   NKEEFSQMENDDFSDSQLVRHFRGVLVAVTTGDRENYDELVGYLHPKKNLNPDEVAILVT 67

Query: 68  SLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLT 127
           +LKALSGAVSYID  HHESLL ++  MS+WNY  D+MDAL  LIISLAASNGKY+D CL 
Sbjct: 68  TLKALSGAVSYIDSVHHESLLFAVSRMSLWNYGIDIMDALLELIISLAASNGKYIDWCLE 127

Query: 128 MLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPT 187
           MLV +F PP Y LD L++ +G++RK++VLSRVHAALK I DLVPLAP RL PIV+Q+MP+
Sbjct: 128 MLVKHFVPPFYLLDSLRQENGIDRKNKVLSRVHAALKEIADLVPLAPLRLSPIVIQKMPS 187

Query: 188 VHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFS 247
           V +K      IV+Y+EN L+LES A+GE V S +L A+VDRL++LD+EIGWD IL +D +
Sbjct: 188 VFSKETE---IVMYVENMLRLESGAIGETVGSIMLPALVDRLLELDVEIGWDGILQED-A 243

Query: 248 KGIFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEG 307
           KGIFEMELEDV E AD+ E      PS  L+RK+L GNL+ E LDSLMVL F HLESC+ 
Sbjct: 244 KGIFEMELEDVTEFADEDENCDSMPPSELLNRKNLQGNLVVEKLDSLMVLAFLHLESCQS 303

Query: 308 TGRLIE-----------------------FVMFYACALDPENCGLRFATMLADVFVSGLY 344
           +GRL E                       +VMFYACALDPE CG++FA +LAD+F   + 
Sbjct: 304 SGRLTEVFDTLLASFQRTVLNAYKSKFTQYVMFYACALDPEGCGVKFAMVLADMFGCDVN 363

Query: 345 PPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSG 404
           PP+TRMSA +YLAS+L+RA+FLS   + ++++ LVDWC  YC +   D+NP+AH+VFYSG
Sbjct: 364 PPITRMSAAAYLASYLTRAKFLSAALVTNIIQSLVDWCYAYCKLRDFDMNPRAHQVFYSG 423

Query: 405 CQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAAR 464
           CQAIMY+LCFRMRS+MDIPRLK QLL MP+E +LKH L+PLKVCLP+VV EFL+Q+KAA+
Sbjct: 424 CQAIMYILCFRMRSLMDIPRLKLQLLNMPMEAILKHKLSPLKVCLPTVVVEFLRQAKAAQ 483

Query: 465 LFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
           LF  SE+FVF+D+LES+LS+AFGG++RLDMFFPFDPCLLKKS+ +
Sbjct: 484 LFMASESFVFDDMLESDLSKAFGGIDRLDMFFPFDPCLLKKSESY 528

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566898|ref|XP_002524432.1| transcription initiation factor ia, putative [Ricinus communis] gi|223536316|gb|EEF37967.1| transcription initiation factor ia, putative [Ricinus communis]

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 333/544 (61%), Positives = 391/544 (71%), Gaps = 38/544 (6%)

Query: 1   MGVELPIDHA-ESHEMED--VNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRL 57
           MGVEL   +  E  +MED  VN +D +LVYHVR+AL SVQ GD ++Y+QLV VMH S RL
Sbjct: 1   MGVELDSQYKKEIEDMEDDGVNYTDSDLVYHVRDALHSVQYGDTNSYDQLVGVMHHSQRL 60

Query: 58  DPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAAS 117
            PD+ ALL TSLKALSGAVSYID  HH+ LL SIFGMS+WNY PDVM+AL  LII+LAAS
Sbjct: 61  TPDDVALLLTSLKALSGAVSYIDECHHDRLLQSIFGMSIWNYGPDVMEALLELIIALAAS 120

Query: 118 NGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRL 177
           NGKY+D CL MLV+NF PP Y +D LK P G  +K QVLSR+H AL+ I  L+P+A +RL
Sbjct: 121 NGKYIDPCLKMLVTNFVPPMYLIDILKLPRGQAKKEQVLSRLHTALEDIAHLIPMAASRL 180

Query: 178 LPIVV---QRMPTVHNK---HERLKM---IVVYMENTLKLESSAMGELVRSTLLMAVVDR 228
              VV   QR+PT   K   HE+ ++     +Y+EN L+LES A+ E V S +LMAVVD+
Sbjct: 181 STEVVSEIQRIPTTFKKDQYHEKDRVKYRTEIYVENMLRLESGAIREFVGSRMLMAVVDK 240

Query: 229 LIDLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVG-DELPSGSLSRKSLSGNLI 287
           LIDLD+ IGWDDIL DD  KGIF +ELED +E +DD E     ELP  +LS KSL  N+ 
Sbjct: 241 LIDLDVAIGWDDILRDDSCKGIFAIELEDADEVSDDDEYNDYGELPR-TLSHKSLGENVA 299

Query: 288 AELLDSLMVLTFEHLESCEGTGRL-----------------------IEFVMFYACALDP 324
           A+LLDSLMV  FEHLE C    RL                        +FVMFYACALDP
Sbjct: 300 ADLLDSLMVRIFEHLELCANNKRLNDVFETLLDSFMLTILNTYKSKFAQFVMFYACALDP 359

Query: 325 ENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLE 384
           ENCG+ FA  L D F  G   PLTRMSAV+YLAS+L+RA+FL   F+ S LKRLVDWC E
Sbjct: 360 ENCGVEFAERLRDRFTYG-ENPLTRMSAVAYLASYLARAKFLPIAFVASTLKRLVDWCSE 418

Query: 385 YCNILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNP 444
           YC    GD+NPKAHRVFYSGCQAI+YVLCFRM S+MDIP LKSQLL MPLE ++KH L P
Sbjct: 419 YCRNQDGDMNPKAHRVFYSGCQAILYVLCFRMSSMMDIPWLKSQLLHMPLEQIMKHKLGP 478

Query: 445 LKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLK 504
           LKVCLPS+V EFL+Q+KAA LFT S+T  F D+LESE S+ FGGLERLDMFFPFDPCLL+
Sbjct: 479 LKVCLPSIVEEFLKQAKAAHLFTTSQTSSFEDVLESEFSKDFGGLERLDMFFPFDPCLLR 538

Query: 505 KSDR 508
             DR
Sbjct: 539 TCDR 542

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084016|ref|XP_002307198.1| predicted protein [Populus trichocarpa] gi|222856647|gb|EEE94194.1| predicted protein [Populus trichocarpa]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 313/542 (57%), Positives = 384/542 (70%), Gaps = 37/542 (6%)

Query: 1   MGVELPIDHAESHEMED-------VNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHL 53
           MGVEL   + E   MED       V+I+D +LVYHVR+AL SV++GD  +Y+QLV V+H 
Sbjct: 1   MGVELTHQYTEYRAMEDQEEVEEGVSITDWDLVYHVRDALLSVKTGDRSSYHQLVGVLHH 60

Query: 54  SGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIIS 113
             R  PD  ALL TSLKALSGAVSYI+   H SLL SIFGMSMWN  PDVMDAL  LII 
Sbjct: 61  RDRSAPDKVALLLTSLKALSGAVSYINDVDHVSLLQSIFGMSMWNCAPDVMDALLELIIC 120

Query: 114 LAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLA 173
           LAASNGKYVD CL MLV+NF PP    D L+ P G  +K QVL RVH  L+ I DLVPLA
Sbjct: 121 LAASNGKYVDLCLDMLVNNFMPPMES-DMLRHPRGQAKKDQVLPRVHTGLEVIVDLVPLA 179

Query: 174 PTRLLPIVVQRMPTVHNKH---ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLI 230
             +L   VVQ+ P    K    +RLK   +Y++N L LE  A+ E V  ++L+ VV+ ++
Sbjct: 180 ALKLSTNVVQKRPMFFRKDFNMDRLK-CRIYLKNMLMLEGGAIREFVGHSMLVEVVNMML 238

Query: 231 DLDMEIGWDDILHDDFSKGIFEMELEDVEEAADDAEQVGD-ELPSGSLSRKSLSGNLIAE 289
           +LD+ IGWD++L DD SKGIF MELED EE A D  Q  D ELPS +L+ ++L  N+ A+
Sbjct: 239 ELDVAIGWDELLRDDPSKGIFTMELEDEEEEAGDDGQANDGELPS-TLTLRNLGKNVTAD 297

Query: 290 LLDSLMVLTFEHLESCEGTGRLIE-----------------------FVMFYACALDPEN 326
           LLDSLM+   EHLE+C    RL E                       F +FYACALDPEN
Sbjct: 298 LLDSLMIQFLEHLEACADKKRLSEVFETLLSSFMATILNTYKSKFSQFTIFYACALDPEN 357

Query: 327 CGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYC 386
           CG++FA  L D+F+S   PP+TRMSAV+YL+S+L+R +FLS  F++++LKRLVDWCL YC
Sbjct: 358 CGVKFAQTLVDLFISTCNPPVTRMSAVAYLSSYLARGKFLSAAFVMNMLKRLVDWCLRYC 417

Query: 387 NILGGDINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLK 446
                D+NPKAH+VFYS CQ IMYVLCF M+SIM++P LKSQLLLMP+E +LKH L PL+
Sbjct: 418 EEQDSDMNPKAHQVFYSACQGIMYVLCFHMKSIMNVPTLKSQLLLMPIEPILKHKLGPLE 477

Query: 447 VCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKS 506
           VCLPS+V+EFL+Q+KAA LFT+S+ F+F DLLES+LSR FGGLERLDMFFPFDPCLLKK 
Sbjct: 478 VCLPSIVNEFLKQAKAAHLFTISKAFIFEDLLESDLSRDFGGLERLDMFFPFDPCLLKKC 537

Query: 507 DR 508
           DR
Sbjct: 538 DR 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826945|ref|XP_002881355.1| RNA polymerase I specific transcription initiation factor RRN3 family protein [Arabidopsis lyrata subsp. lyrata] gi|297327194|gb|EFH57614.1| RNA polymerase I specific transcription initiation factor RRN3 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/520 (55%), Positives = 376/520 (72%), Gaps = 33/520 (6%)

Query: 15  MEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMH--LSGRLDPDNRALLETSLKAL 72
           +++V++SD +LV  VR ALTSV++GD D Y++LV V++  +    DPD  A LET LKAL
Sbjct: 19  VDNVDLSDTDLVQTVRNALTSVKTGDPDLYSELVGVINKDIKEFRDPDAVAQLETVLKAL 78

Query: 73  SGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSN 132
           SG+V+ IDI HH+ LL S+FGM +W++ P VMDAL  L+ISLA + GKY+D CL MLVSN
Sbjct: 79  SGSVACIDIVHHQKLLSSLFGMKLWDHRPVVMDALVNLVISLAVTRGKYLDPCLNMLVSN 138

Query: 133 FTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
           F PP   ++ L  P  L +K +VLSRVHAAL  I  LVPL P+RL+P++ Q MP +H K 
Sbjct: 139 FVPPPSVVNNLSHPRVLNKKIEVLSRVHAALLKISILVPLTPSRLVPMLFQEMPKIHKKD 198

Query: 193 ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFE 252
                IV+Y+E+ LKLE+S +G++  S +L  V++RL DLD+EIGWDDI  DD S+G+F+
Sbjct: 199 HS---IVIYVESLLKLENSPIGQVGGSMILGVVMERLRDLDLEIGWDDIPQDDSSRGMFD 255

Query: 253 MELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRL- 311
           MELED  E   +    GDELP G L + +  G+++++LLD LMV+ FEHLESC+  GRL 
Sbjct: 256 MELEDAVEGTINE---GDELPVGPLKQDTSDGSVVSKLLDKLMVVAFEHLESCQNDGRLD 312

Query: 312 ----------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTR 349
                                  +F+MFYAC+LDPENCG++FA+ L ++F+S    P TR
Sbjct: 313 QVFDILLESFENFILNTYKSKFTQFLMFYACSLDPENCGVKFASKLVEIFLSSNKHPSTR 372

Query: 350 MSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIM 409
           MSAV+YLASFL+R +FL   F+ S+LKRL+D C+ YC     DI P+ H++F+SGCQAIM
Sbjct: 373 MSAVAYLASFLARGKFLPVSFVASMLKRLIDECVGYCRTCNDDIRPEEHQIFFSGCQAIM 432

Query: 410 YVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVS 469
           YVLCFRMRSI+D+PR +SQ  L PLE++L H LNPL+VCLPSVV+EFL+Q+KA  LF VS
Sbjct: 433 YVLCFRMRSILDVPRFRSQ--LTPLESILMHKLNPLRVCLPSVVAEFLRQAKAGGLFIVS 490

Query: 470 ETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
           ++F+F+DLLESELSRAFGG ERLD FFPFDPCLLK S+ F
Sbjct: 491 DSFIFDDLLESELSRAFGGCERLDTFFPFDPCLLKTSNSF 530

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686199|ref|NP_850236.1| RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana] gi|20465617|gb|AAM20140.1| unknown protein [Arabidopsis thaliana] gi|23296957|gb|AAN13210.1| unknown protein [Arabidopsis thaliana] gi|330253924|gb|AEC09018.1| RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 282/520 (54%), Positives = 377/520 (72%), Gaps = 33/520 (6%)

Query: 15  MEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVM--HLSGRLDPDNRALLETSLKAL 72
           +++V++SD +LV  VR+ALTSV++GD+D Y+++V VM   +    DPD  A LET LKAL
Sbjct: 20  VDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDIKEFKDPDVVAQLETVLKAL 79

Query: 73  SGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSN 132
           SGAV+ ID+ HH+ LL ++F M +W++ PDVMDAL  L+ISLA ++GKY+DSCL MLVSN
Sbjct: 80  SGAVACIDVLHHQKLLSALFRMKLWDHRPDVMDALVNLVISLAVTSGKYLDSCLNMLVSN 139

Query: 133 FTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
           F PP + ++ L     L +K  VLSRVHAAL  I  LVPL P+RL+P++ Q+MP +H K 
Sbjct: 140 FVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISILVPLTPSRLVPMLFQQMPKMHKKD 199

Query: 193 ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFE 252
                IV+Y+E+ LKLE+S++G++  S +L  V++RL DLD+EI WDDI  DD S+G+F+
Sbjct: 200 HS---IVIYVESLLKLENSSIGQVGGSMILGMVMERLRDLDLEIEWDDIPQDDSSRGMFD 256

Query: 253 MELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRL- 311
           MELED   AA+     GDELP G L + +  G+++++LLD LMV+ FEHLESC+  GRL 
Sbjct: 257 MELED---AAEGTMNDGDELPVGPLKQDTSDGSIVSKLLDKLMVVAFEHLESCQNDGRLD 313

Query: 312 ----------------------IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTR 349
                                  +F++FYAC+LDPENCG++FA+ L ++F+S      TR
Sbjct: 314 QVFESLFKSFENFILNTYKSKFTQFLIFYACSLDPENCGVKFASKLVEIFLSSNKHVATR 373

Query: 350 MSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIM 409
           MSAV+YLASFL+R +FL   F+ S+LKRL+D C+ YC     D  P+AH++F+SGCQAIM
Sbjct: 374 MSAVAYLASFLARGKFLPVSFVASMLKRLIDECVGYCRTCNDDTRPEAHQIFFSGCQAIM 433

Query: 410 YVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVS 469
           YVLCFRMRSI+D+PR +SQ  L PLE++L H LNPL VCLPSVV+EFL+Q+K   LF VS
Sbjct: 434 YVLCFRMRSILDVPRFRSQ--LTPLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLFIVS 491

Query: 470 ETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
           ++F+F+DLLESELSRAFGG ERLD FFPFDPCLLK S+ F
Sbjct: 492 DSFIFDDLLESELSRAFGGFERLDTFFPFDPCLLKSSNSF 531

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	515
TAIR|locus:2061574	613	AT2G34750 [Arabidopsis thalian	0.565	0.474	0.488	1.7e-139
TAIR|locus:2204609	604	AT1G30590 [Arabidopsis thalian	0.955	0.814	0.499	1.2e-122
TAIR|locus:2056063	573	AT2G39240 [Arabidopsis thalian	0.924	0.830	0.462	5.4e-102
UNIPROTKB|B4E3T2	618	RRN3 "cDNA FLJ53965, highly si	0.419	0.349	0.344	7.9e-27
UNIPROTKB|Q9NYV6	651	RRN3 "RNA polymerase I-specifi	0.419	0.331	0.344	9.8e-27
MGI|MGI:1925255	656	Rrn3 "RRN3 RNA polymerase I tr	0.419	0.329	0.327	1.6e-26
RGD|1305001	661	Rrn3 "RRN3 RNA polymerase I tr	0.421	0.328	0.334	6.3e-26
UNIPROTKB|F5H148	621	RRN3 "RNA polymerase I-specifi	0.419	0.347	0.344	9e-26
UNIPROTKB|E1B883	673	RRN3 "Uncharacterized protein"	0.409	0.313	0.341	1.9e-25
UNIPROTKB|F1NIF7	622	RRN3 "Uncharacterized protein"	0.425	0.352	0.305	2.5e-24

TAIR|locus:2061574 AT2G34750 [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.7e-139, Sum P(2) = 1.7e-139
 Identities = 146/299 (48%), Positives = 205/299 (68%)

Query:    15 MEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVM--HLSGRLDPDNRALLETSLKAL 72
             +++V++SD +LV  VR+ALTSV++GD+D Y+++V VM   +    DPD  A LET LKAL
Sbjct:    20 VDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDIKEFKDPDVVAQLETVLKAL 79

Query:    73 SGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSN 132
             SGAV+ ID+ HH+ LL ++F M +W++ PDVMDAL  L+ISLA ++GKY+DSCL MLVSN
Sbjct:    80 SGAVACIDVLHHQKLLSALFRMKLWDHRPDVMDALVNLVISLAVTSGKYLDSCLNMLVSN 139

Query:   133 FTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
             F PP + ++ L     L +K  VLSRVHAAL  I  LVPL P+RL+P++ Q+MP +H K 
Sbjct:   140 FVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISILVPLTPSRLVPMLFQQMPKMHKKD 199

Query:   193 ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIFX 252
                  IV+Y+E+ LKLE+S++G++  S +L  V++RL DLD+EI WDDI  DD S+G+F 
Sbjct:   200 HS---IVIYVESLLKLENSSIGQVGGSMILGMVMERLRDLDLEIEWDDIPQDDSSRGMFD 256

Query:   253 XXXXXXXXXXXXXXXXXXXLPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRL 311
                                LP G L + +  G+++++LLD LMV+ FEHLESC+  GRL
Sbjct:   257 MELEDAAEGTMNDGDE---LPVGPLKQDTSDGSIVSKLLDKLMVVAFEHLESCQNDGRL 312

GO:0005634 "nucleus" evidence=ISM

GO:0006360 "transcription from RNA polymerase I promoter" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204609 AT1G30590 [Arabidopsis thaliana (taxid:3702)]

 Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
 Identities = 267/535 (49%), Positives = 353/535 (65%)

Query:     1 MGVE-LPIDHAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDP 59
             MG E  P     S+ M++   +D +LV+ VR+AL SVQ+GD D+Y+QL  VM L+   D 
Sbjct:     1 MGAEEFPSVPFNSNAMDNAEYTDTDLVFAVRKALASVQNGDTDDYSQLKTVMCLTEDADF 60

Query:    60 DNRALLETSLKALSGAVSYIDISHHESLLVSIFGMSMW--NYDPDVMDALKGLIISLAAS 117
             D  A LET LK+LS +V++ID+ HH+ LL +   MS+W  ++ P VMDAL  LIISLAA+
Sbjct:    61 DAVAQLETVLKSLSVSVAWIDLVHHKDLLEA---MSLWYHSHRPSVMDALVDLIISLAAT 117

Query:   118 NGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRL 177
             +GKY+D CL MLV NF+ P+ F  K+ +   +++  +V  RVHAAL  I  L+PLAP  L
Sbjct:   118 SGKYLDPCLNMLVRNFSQPT-FKHKVSQTQLVKKMQEVHPRVHAALHKISYLIPLAPWNL 176

Query:   178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIG 237
             + I+ Q M  +  K      IV Y++N L+LE+S++GE+V S +LM V++R++DLD+  G
Sbjct:   177 VSILAQNMRKIDKKDPS---IVTYVDNLLRLENSSIGEVVGSVILMMVMERMLDLDLVSG 233

Query:   238 WDDILHDDFSKGIFXXXXXXXXXXXXXXXXXXXXLPSGSLSRKSLSGNLIAELLDSLMVL 297
              DD      + G+F                     P G+L + +  GN+++ELLD LMVL
Sbjct:   234 CDDS-----NGGMFDMELEDAVESTMNEGDE---FPVGALKQNTSGGNVVSELLDKLMVL 285

Query:   298 TFEHLESCEGTGRLIE-----------------------FVMFYACALDPENCGLRFATM 334
              F HLESC+ + RL E                       F+MFYAC+LDPENCG+RFA+ 
Sbjct:   286 FFHHLESCQNSDRLDEVFEILFKSFENYILNTYKTKFSQFLMFYACSLDPENCGVRFASK 345

Query:   335 LADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDIN 394
             L D+++S     LTRMSAV+YLAS+LSR +FL   F+ S+LKRLVD C EYC     D+ 
Sbjct:   346 LLDIYLSSNTCRLTRMSAVAYLASYLSRGKFLPASFVASMLKRLVDECAEYCGTCNDDVK 405

Query:   395 PKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVS 454
             P+AH+VFYSGCQAI+YVLCFRMRSI++IPR +SQ     LE++L H LNPL VCLPSVVS
Sbjct:   406 PEAHQVFYSGCQAILYVLCFRMRSIVEIPRFQSQF--RSLESILSHKLNPLLVCLPSVVS 463

Query:   455 EFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRF 509
             EFL+Q+KA  LF VSE+F+F+DL ESELSRAFGG ERLD FFPFDPCLLK S  +
Sbjct:   464 EFLKQAKAGGLFIVSESFIFDDLHESELSRAFGGFERLDTFFPFDPCLLKMSSSY 518

GO:0005634 "nucleus" evidence=ISM

GO:0006360 "transcription from RNA polymerase I promoter" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2056063 AT2G39240 [Arabidopsis thaliana (taxid:3702)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 237/512 (46%), Positives = 319/512 (62%)

Query:    12 SHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNR--------- 62
             + E+E  ++SD  LV  +RE L S QSGD D YN+LV +M++  +   D+          
Sbjct:     3 AEEVETADLSDKALVSAIREVLASAQSGDTDQYNELVQLMYIKKKKSGDDAMAQPEVPDD 62

Query:    63 ----ALLETSLKALSGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASN 118
                 A  ET LK LS +V+ +D  HH  LL  I G  +W++ P+V+ AL  LIISLA ++
Sbjct:    63 VDVVAQRETLLKILSHSVACLDDVHHNHLLQLILGTRIWDHKPNVIYALLDLIISLATTS 122

Query:   119 GKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKH-QVLSRVHAALKSIFDLVPLAPTRL 177
             GK++ SCL  LVSN            +P  L+ K  +VLSRVHAAL  I  LVPLAP+ L
Sbjct:   123 GKHLSSCLDTLVSNLR---------SQPRKLDNKMLEVLSRVHAALHKISYLVPLAPSIL 173

Query:   178 LPIVVQRMPTVHNKHERLKMIVVYMENTLKLE-SSAMGELVRSTLLMAVVDRLIDLDMEI 236
             LPI+ Q MP+VH+K  RL+++V Y++N LKLE SS +G++V   +LM V+ R  DLD EI
Sbjct:   174 LPILAQSMPSVHDK-ARLQVVVPYVKNLLKLENSSIIGKVVGKDILMMVMGRFRDLDSEI 232

Query:   237 GWDDILHDDFSKGIFXXXXXXXXXXXXXXXXXXXXLPSGSLSRKSLS-GNLIAELLDSLM 295
               DD L +D S  +F                    +       KS      + E+ ++L 
Sbjct:   233 ECDDNLQNDSSLAMFDMELDVAVEGTLVSKLLDDLMVESFNHLKSCQDAGRLDEVFENLF 292

Query:   296 VLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSY 355
               +FE+L       +  +F+MFYAC+LDPENCG++FA+ L + F+S     +TR +AV+Y
Sbjct:   293 E-SFENLILNTQKLKFSQFLMFYACSLDPENCGVKFASKLLEKFLSSNNNQVTRTNAVTY 351

Query:   356 LASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKAHRVFYSGCQAIMYVLCFR 415
             LAS+L+RA FLS  F+ S+LKRLVD C +YC     D  P+ H+VFYSGCQAI+YVLCFR
Sbjct:   352 LASYLARANFLSASFVASMLKRLVDECADYCRTCNDDARPEVHQVFYSGCQAILYVLCFR 411

Query:   416 MRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFN 475
             MRSI+++P  +SQL   PLE+VL H L+PL+VCL SVVSEFL Q+KA  LF VS+ F+F+
Sbjct:   412 MRSILEVPHFQSQLT--PLESVLSHKLDPLRVCLSSVVSEFLIQAKACGLFIVSDAFIFD 469

Query:   476 DLLESELSRAFGGLERLDMFFPFDPCLLKKSD 507
             DL ESELSRA GG      FFPF P LL+KS+
Sbjct:   470 DLSESELSRALGG------FFPF-PWLLEKSN 494

GO:0005634 "nucleus" evidence=ISM

GO:0006360 "transcription from RNA polymerase I promoter" evidence=ISS

UNIPROTKB|B4E3T2 RRN3 "cDNA FLJ53965, highly similar to RNA polymerase I-specific transcription initiation factor RRN3" [Homo sapiens (taxid:9606)]

 Score = 245 (91.3 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
 Identities = 85/247 (34%), Positives = 118/247 (47%)

Query:   280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
             K L  +LI  + D L++ T  H  SC      ++F MFY C+         F   L    
Sbjct:   308 KDLYRDLI-NIFDKLLLPT--HA-SCH-----VQFFMFYLCSFKL-GFAEAFLEHLWKKL 357

Query:   340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
                  P + R +A +Y+ SFL+RA+F+    + S L  LV+W   Y N    D   KA  
Sbjct:   358 QDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFC 415

Query:   398 ----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLKVCLP 450
                 H  FYS CQA+ Y   FR + ++    LK  L  L  L  E ++   LNPLK+CLP
Sbjct:   416 DVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLKICLP 474

Query:   451 SVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER-----LDMFFPFDPCL 502
             SVV+ F   +   +L   +T+ E      +L    S A G   +     LD FFPFDPC+
Sbjct:   475 SVVNFFAAITNKYQLVFCYTIIERNN-RQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCV 533

Query:   503 LKKSDRF 509
             LK+S +F
Sbjct:   534 LKRSKKF 540

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0048872 "homeostasis of number of cells" evidence=IEA

GO:0070063 "RNA polymerase binding" evidence=IEA

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q9NYV6 RRN3 "RNA polymerase I-specific transcription initiation factor RRN3" [Homo sapiens (taxid:9606)]

 Score = 245 (91.3 bits), Expect = 9.8e-27, Sum P(2) = 9.8e-27
 Identities = 85/247 (34%), Positives = 118/247 (47%)

Query:   280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
             K L  +LI  + D L++ T  H  SC      ++F MFY C+         F   L    
Sbjct:   341 KDLYRDLI-NIFDKLLLPT--HA-SCH-----VQFFMFYLCSFKL-GFAEAFLEHLWKKL 390

Query:   340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
                  P + R +A +Y+ SFL+RA+F+    + S L  LV+W   Y N    D   KA  
Sbjct:   391 QDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFC 448

Query:   398 ----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLKVCLP 450
                 H  FYS CQA+ Y   FR + ++    LK  L  L  L  E ++   LNPLK+CLP
Sbjct:   449 DVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLKICLP 507

Query:   451 SVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER-----LDMFFPFDPCL 502
             SVV+ F   +   +L   +T+ E      +L    S A G   +     LD FFPFDPC+
Sbjct:   508 SVVNFFAAITNKYQLVFCYTIIERNN-RQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCV 566

Query:   503 LKKSDRF 509
             LK+S +F
Sbjct:   567 LKRSKKF 573

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0048872 "homeostasis of number of cells" evidence=IEA

GO:0070063 "RNA polymerase binding" evidence=IEA

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006360 "transcription from RNA polymerase I promoter" evidence=TAS

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1925255 Rrn3 "RRN3 RNA polymerase I transcription factor homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
 Identities = 81/247 (32%), Positives = 119/247 (48%)

Query:   280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
             K L  +LI+ + D L++ T  H  SC      ++F MF+ C+         F   L    
Sbjct:   339 KDLYRDLIS-IFDKLLLPT--HA-SCH-----VQFFMFFLCSFKL-GFAEAFLEHLWKKL 388

Query:   340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
                  P + R +A +Y+ SFL+RA+F+    + + L  LV+W   Y  +   D   KA  
Sbjct:   389 QDPNNPAIIRQAAANYIGSFLARAKFIPLITVKTCLDLLVNWLHMY--LTNQDSGTKAFC 446

Query:   398 ----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLKVCLP 450
                 H  FYS CQA+ Y + FR + ++    LK  L  L  L  E ++   LNPLK+CLP
Sbjct:   447 DVALHGPFYSACQAVFYTVVFRHKQLLS-GNLKQGLQYLQSLNFERIVLSQLNPLKICLP 505

Query:   451 SVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER-----LDMFFPFDPCL 502
              VV+ F   +   +L   +T+ E      +L    S A G   +     LD FFPFDPC+
Sbjct:   506 QVVNFFAAITNKYQLVFCYTIMERNS-RQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCV 564

Query:   503 LKKSDRF 509
             LK+S +F
Sbjct:   565 LKRSKKF 571

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=IMP

GO:0007000 "nucleolus organization" evidence=IMP

GO:0007028 "cytoplasm organization" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0042254 "ribosome biogenesis" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048872 "homeostasis of number of cells" evidence=IMP

GO:0070063 "RNA polymerase binding" evidence=IDA

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=IDA

RGD|1305001 Rrn3 "RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
 Identities = 84/251 (33%), Positives = 121/251 (48%)

Query:   280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
             K L  +LI+ + D L++ T  H  SC      ++F MF+ C+         FA    +  
Sbjct:   339 KDLYRDLIS-IFDKLVLPT--HA-SCH-----VQFFMFFLCSFKLSLLLQGFAEAFLEHL 389

Query:   340 VSGLYPP----LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP 395
                L  P    + R +A +Y+ SFL+RA+F+    + S L  LV+W   Y N    D   
Sbjct:   390 WKKLQDPNNPVIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHLYLN--SQDSGT 447

Query:   396 KA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLK 446
             KA      H  FYS CQA+ Y + FR + ++    LK  L  L  L  E ++   LNPLK
Sbjct:   448 KAFCDVALHGPFYSACQAVFYTVVFRHKQLLS-GNLKEGLRYLQSLNFERIVLSQLNPLK 506

Query:   447 VCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER-----LDMFFPF 498
             +CLP VV+ F   +   +L   +T+ E      +L    S A G   +     LD FFPF
Sbjct:   507 ICLPRVVNFFAAITNKYQLVFCYTIMERNN-RQMLPVIRSTAGGDSVQTCTNPLDTFFPF 565

Query:   499 DPCLLKKSDRF 509
             DPC+LK+S +F
Sbjct:   566 DPCMLKRSKKF 576

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006352 "DNA-dependent transcription, initiation" evidence=ISO

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=ISO

GO:0007000 "nucleolus organization" evidence=ISO

GO:0007028 "cytoplasm organization" evidence=ISO

GO:0008283 "cell proliferation" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0048872 "homeostasis of number of cells" evidence=ISO

GO:0070063 "RNA polymerase binding" evidence=ISO

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=ISO

UNIPROTKB|F5H148 RRN3 "RNA polymerase I-specific transcription initiation factor RRN3" [Homo sapiens (taxid:9606)]

 Score = 245 (91.3 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
 Identities = 85/247 (34%), Positives = 118/247 (47%)

Query:   280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
             K L  +LI  + D L++ T  H  SC      ++F MFY C+         F   L    
Sbjct:   311 KDLYRDLI-NIFDKLLLPT--HA-SCH-----VQFFMFYLCSFKL-GFAEAFLEHLWKKL 360

Query:   340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
                  P + R +A +Y+ SFL+RA+F+    + S L  LV+W   Y N    D   KA  
Sbjct:   361 QDPSNPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIYLN--NQDSGTKAFC 418

Query:   398 ----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLKVCLP 450
                 H  FYS CQA+ Y   FR + ++    LK  L  L  L  E ++   LNPLK+CLP
Sbjct:   419 DVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLQYLQSLNFERIVMSQLNPLKICLP 477

Query:   451 SVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGGLER-----LDMFFPFDPCL 502
             SVV+ F   +   +L   +T+ E      +L    S A G   +     LD FFPFDPC+
Sbjct:   478 SVVNFFAAITNKYQLVFCYTIIERNN-RQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCV 536

Query:   503 LKKSDRF 509
             LK+S +F
Sbjct:   537 LKRSKKF 543

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|E1B883 RRN3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
 Identities = 86/252 (34%), Positives = 120/252 (47%)

Query:   280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
             K L  +LI  + D L++ T  H  SC      ++F MFY C+       L FA    +  
Sbjct:   363 KDLYRDLIT-IFDKLLLPT--HA-SCH-----VQFFMFYLCSFK-----LGFAEAFLEHL 408

Query:   340 VSGLYPP----LTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINP 395
                L  P    + R +A +Y+ SFL+RA+F+    + S L  LV+W   Y N    D   
Sbjct:   409 WKKLQDPNNPAIIRQAAANYIGSFLARAKFIPLITVKSCLDLLVNWLHVYLN--NQDSGT 466

Query:   396 KA------HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL-LLMPL--ETVLKHDLNPLK 446
             KA      H  FYS CQA+ Y   FR + ++    LK  L  L  L  E ++   LNPLK
Sbjct:   467 KAFCDVALHGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFERIVMSQLNPLK 525

Query:   447 VCLPSVVSEFLQQSKAARL---FTVSETFVFNDLLESELSRAFGG------LERLDMFFP 497
             +CLPSVV+ F   +   +L   +T+ E    N  +   +    GG         LD FFP
Sbjct:   526 ICLPSVVNFFAAITNKYQLVFCYTLIERN--NRQMLPVIRNTAGGDSVQTCTNPLDTFFP 583

Query:   498 FDPCLLKKSDRF 509
             FDPC+LK+S +F
Sbjct:   584 FDPCVLKRSKKF 595

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=IEA

GO:0070063 "RNA polymerase binding" evidence=IEA

GO:0048872 "homeostasis of number of cells" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|F1NIF7 RRN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 228 (85.3 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
 Identities = 74/242 (30%), Positives = 119/242 (49%)

Query:   280 KSLSGNLIAELLDSLMVLTFEHLESCEGTGRLIEFVMFYACALDPENCGLRFATMLADVF 339
             K L  +L++ + D L++ T  H  SC      +++ +F+ C+L        F   L    
Sbjct:   309 KDLYRDLVS-VFDKLILPT--HA-SCH-----VQYFIFHICSLK-SGLAEAFLDHLWKKL 358

Query:   340 VSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGGDINPKA-- 397
                  P + R +A SY+ SFL+RA+F+    + + L  LV+W  +Y +      N     
Sbjct:   359 QDPNNPSVIRQTAGSYIGSFLARAKFIPVVTVKACLDLLVNWMHKYIDNQDTGANAYCDV 418

Query:   398 --HRVFYSGCQAIMYVLCFRMRSIMD--IPRLKSQLLLMPLETVLKHDLNPLKVCLPSVV 453
               H  FYS CQA  Y L FR + ++D  + +  S L  +  E ++   LNPLK+C+PSVV
Sbjct:   419 ALHGPFYSACQAAFYTLIFRHKQLLDGNLRKGLSYLQSLNFERIVMCQLNPLKICIPSVV 478

Query:   454 SEFLQQSKAARL---FTVSE--TFVFNDLLESELSRAFGGL--ERLDMFFPFDPCLLKKS 506
             + F   ++  +L   +T+ E     F  ++ S     F  +    LD FFPFDP +LK+S
Sbjct:   479 NLFAAITRKYQLVFCYTIIERNNRQFIPVVRSGTGGDFVQMCTNPLDSFFPFDPYVLKRS 538

Query:   507 DR 508
              +
Sbjct:   539 KK 540

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0007028 "cytoplasm organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0048872 "homeostasis of number of cells" evidence=IEA

GO:0070063 "RNA polymerase binding" evidence=IEA

GO:2000142 "regulation of DNA-dependent transcription, initiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	515
pfam05327	554	pfam05327, RRN3, RNA polymerase I specific transcr	1e-116

>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3

 Score =  354 bits (910), Expect = e-116
 Identities = 171/551 (31%), Positives = 265/551 (48%), Gaps = 68/551 (12%)

Query: 14  EMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRL-DPDNRALLETSLKAL 72
            +  V  S   L   VR AL S + GD++ Y++L     L     D  + A L+  LKAL
Sbjct: 2   AVNKVRFSLEMLRRFVRRALESHEKGDSELYDELKNQFALPAESKDDISVAQLQILLKAL 61

Query: 73  SGAVSYIDISHHESLLVSIFGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSN 132
           S  VS +D S    L+ +I  ++    D   ++A    + +L ++ GKY+   L+MLVS+
Sbjct: 62  SSNVSLLDRSC-NGLVEAILSLNWLGRDESFVEAYIQFLGNLVSAQGKYLGEVLSMLVSH 120

Query: 133 FTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTVHNKH 192
           F PP     +         + +VLSRVH AL+ I  LVP +P  LLPI+ +  P   +K 
Sbjct: 121 FVPPPSSTSES-PGDPPVEQREVLSRVHDALRYILRLVPSSPGFLLPILAKNFP---HKT 176

Query: 193 ERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDDFSKGIF 251
           +  K++V Y+ N L+L        +   +L  +++RL+ LD+EI  + D + D+  + + 
Sbjct: 177 KSKKVLVGYVRNLLRLTEYC--PELGFDILELIIERLLKLDVEIQNELDDIDDEEEERVL 234

Query: 252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESC------ 305
             E +D E+   D +   DE  S     ++ +   ++E LD++M L F HL+SC      
Sbjct: 235 ADEDDDDEDDMFDMDDD-DEEESDPEVERTSTIKEVSEKLDAIMDLLFTHLDSCFTDGEL 293

Query: 306 -EGTG---------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGL 343
            EG G                     R ++F++F+  +L PE     F   L D+  +  
Sbjct: 294 DEGKGVNLFNTLLSLFDNHILPTYRSRHVQFLLFHFSSLSPELMD-AFLGTLWDIAFNPN 352

Query: 344 YPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCN-----ILGGDINPKAH 398
            P + R +A +YLASFL+RA+ +    +  +L  LVDW   Y +       G D   + H
Sbjct: 353 EPAVKRQAAAAYLASFLARAKHVPLEQVRFVLSLLVDWLNRYVDERESECRGPD--LERH 410

Query: 399 RVFYSGCQAIMYVLCFRMRSIMDIPRLKSQL--LLMPLETVLKHDLNPLKVCLPSVVSEF 456
            VFYS CQA++Y+ CFR R ++  P+    L  L   L+ ++   LNPLK CLPSVVSEF
Sbjct: 411 GVFYSACQALLYIFCFRWRDLLLSPKDLEWLQSLDKFLQRIVMSKLNPLKYCLPSVVSEF 470

Query: 457 LQQSKAARLFTVSETFVFNDLLESELSRAFGGLER------------------LDMFFPF 498
            + ++  +L       +        LSR  GG                     LD +FPF
Sbjct: 471 ARIARHLQLVYCY--SIIERNKRERLSRVRGGSASDGALRERPSAAGDEKTRQLDAYFPF 528

Query: 499 DPCLLKKSDRF 509
           DP LLK+S ++
Sbjct: 529 DPYLLKRSKKW 539

This family consists of several eukaryotic proteins which are homologous to the yeast RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in Saccharomyces cerevisiae. Length = 554

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	515
PF05327	563	RRN3: RNA polymerase I specific transcription init	100.0
KOG2434	500	consensus RNA polymerase I transcription factor [T	100.0

>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein

Probab=100.00  E-value=3e-119  Score=987.69  Aligned_cols=479  Identities=36%  Similarity=0.599  Sum_probs=353.0

Q ss_pred             cccCcCChHHHHHHHHHHHHHhhcCCchHHHHHHHHh-ccCCCCCcchHHHHHHHHHHHHccccccCccchHHHHHHHHc
Q 010207           15 MEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVM-HLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFG   93 (515)
Q Consensus        15 ~~~~~~s~~~~~~~V~~aL~~~~~Gd~~~Y~~L~~~l-~~~~~~~~~~~~~l~~~L~aL~~~Vs~Ld~~~~~~LV~ail~   93 (515)
                      ++|++||+++++.+|++||+++++||+++|++|+++| .+.+.++++++++|..||++|++|||+||.+ |++||++||+
T Consensus         2 ~~~~~~s~~~~~~~V~~AL~~~~~Gd~~~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~   80 (563)
T PF05327_consen    2 KNDVEFSDEMYKSFVRSALESHEKGDSSQYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS-CKQLVEAILS   80 (563)
T ss_dssp             -------HHHHHHHHHHHHHHHHTT--HHHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC-CHHHHHHHHT
T ss_pred             CchhhhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHc
Confidence            5789999999999999999999999999999999999 6777888888999999999999999999976 9999999999


Q ss_pred             CCCcCCChhHHHHHHHHHHHHHhcccCcHHHHHHHHhhccCCCcccccccCCCCCc-hhhhhhHHHHHHHHHHHHhHcCC
Q 010207           94 MSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGL-ERKHQVLSRVHAALKSIFDLVPL  172 (515)
Q Consensus        94 ~~~W~~~~~~v~~y~~Fl~~Lvsa~~~y~~~vl~~LV~~F~p~~~~~~~~~~~~~~-~~~~~~~~~~H~~L~~Il~lvP~  172 (515)
                      +.||.++++++++|++|+++||||||+|++.|++|||++|.|++.....+  ++.+ .+++++++++|.+|++|+++||+
T Consensus        81 ~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~--~~~~~~~~~~~~~~vH~~L~~Il~lvP~  158 (563)
T PF05327_consen   81 LNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEW--PGCPPEKRREIYERVHDALQKILRLVPT  158 (563)
T ss_dssp             -TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH-----------------HHHHHHHHHHH-GG
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCcccccc--chhhhhhhhhhHHHHHHHHHHHHHHcCC
Confidence            96558888999999999999999999999999999999999987643322  3333 47788999999999999999999


Q ss_pred             ChhhhHHHHHhcCCCCcCccccccchhhhHHHHHHhhhccchhhHHHHHHHHHHHHHHhhcccccc--ccccccccccc-
Q 010207          173 APTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGW--DDILHDDFSKG-  249 (515)
Q Consensus       173 a~~~L~~~l~~~FP~~~~~~~~~~~h~~Yv~NlL~l~~y~~~p~L~~~il~lIi~rli~iDVei~~--ddi~~d~~~~~-  249 (515)
                      ++++|.++|+++|||+++++.   .|++|++|+|+|++|+  |+||++||++||+||++|||||+.  ||+++++ .++ 
T Consensus       159 s~~~L~~~l~~~FP~~~~~~~---~~~~Yv~NlL~l~~Y~--P~L~~~Il~lIi~rLi~iDVeiq~~~ddidd~~-~~~~  232 (563)
T PF05327_consen  159 SPSFLIPILVQNFPHKRKSKD---EHVNYVRNLLRLTEYC--PELRSDILSLIIERLIKIDVEIQIELDDIDDEE-EEDL  232 (563)
T ss_dssp             GHHHHHHHHHHTS--TTS-HH---HHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHHHHHHHHHHCH---------
T ss_pred             CHHHHHHHHHHcCcCCCCChH---HHHHHHHHHHHHHcch--HHHHHHHHHHHHHHHHHHhcccccCccchhhhh-hhhh
Confidence            999999999999999999984   5599999999999998  999999999999999999996654  6764433 222 


Q ss_pred             -----------cccccchhhhhhcccccccCCCCCCCchhhcccchhhHHHHHHHHHHHHHHHhhhhccCCc--------
Q 010207          250 -----------IFEMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGR--------  310 (515)
Q Consensus       250 -----------if~me~dd~~~~~~d~e~~~de~~~~~~~~~~~~~~~~a~kLD~lm~~lf~~l~~~~~~~~--------  310 (515)
                                 +|+|++++++++     +.++++..+++..+..+++++++|||+||.++|+|+++|+.+++        
T Consensus       233 ~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~kLD~im~~lf~~l~~~~~~~~~~~~~~~~  307 (563)
T PF05327_consen  233 FEEEEDDEEDDVFDMDEDDDDDS-----SIDDEDESDEEERRTEDIDEMAEKLDSIMDLLFEYLDSCFTNGSLDEGNADS  307 (563)
T ss_dssp             -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHSSTHHH
T ss_pred             hhhccCccccccccccccccccc-----ccccccccchhhhhHhhHHHHHHHHHHHHHHHHHHHHHhccCCccchhHHHH
Confidence                       333322221111     01112222223445567999999999999999999999876543        


Q ss_pred             --------------------cceeeeeeeecCCccchhHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHhhhccCCHHH
Q 010207          311 --------------------LIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCF  370 (515)
Q Consensus       311 --------------------l~~FllFy~cs~~~~~~~~~F~~~L~~~~~~~~~~~~~R~aAaaYLaSflARAk~v~~~~  370 (515)
                                          +.||||||+||++|++++ +|+++||+++++|++|+++||+||+|||||||||||||.++
T Consensus       308 lf~~Ll~~F~~~ILpT~~sr~vQFl~Fy~~s~~~~~~~-~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRAk~v~~~~  386 (563)
T PF05327_consen  308 LFNTLLSIFESHILPTHKSRHVQFLLFYFCSLDPELAD-AFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARAKFVPLST  386 (563)
T ss_dssp             HHHHHHHHHHHTCCCC-S-SSTTHHHHHHHTTSHHHHH-HHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHBTT--HHH
T ss_pred             HHHHHHHHHHHHccCCCccchHHHHHHHHHHcCchHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence                                445999999999999986 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhCC----CCCCCchhHHHHHHHHHHHHHhhhccccccCchhhhhhhccc--hhHhhccCCCC
Q 010207          371 IVSLLKRLVDWCLEYCNILGG----DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMP--LETVLKHDLNP  444 (515)
Q Consensus       371 v~~~l~~L~~w~~~Y~~~~~~----~~~~~~h~~FYs~cQA~~YIfCFR~~dL~~~~~~~~~l~~~~--l~rii~s~LNP  444 (515)
                      |+.++++|++||++|++++++    ++++++|++|||+|||+|||||||||+|+..++...++++++  |+|+|+|||||
T Consensus       387 v~~~l~~L~~w~~~y~~~~~~~~~~~~~~~~h~~FYs~~QAi~YifcFR~~~l~~~~~~~~~~~~l~~~l~r~v~s~lnP  466 (563)
T PF05327_consen  387 VRSVLSYLCDWLHDYIDEQESSSNAGPDLKRHGVFYSVCQAIFYIFCFRWRDLLASPKDLEWLQSLDKFLQRIVTSKLNP  466 (563)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTTSSS-GGGGHHHHHHHHHHHHHHHHHGGGG--B-TTS-BGGGHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCChhhhhhHHHHHHHHHHHHHHhHHHhccCCCcchHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999998875    347899999999999999999999999997665555555555  99999999999


Q ss_pred             cccccHHHHHHHHHHhhhcccceeecccccchhhhhhhh----hccCC-------------------cccCcccCCCCCC
Q 010207          445 LKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELS----RAFGG-------------------LERLDMFFPFDPC  501 (515)
Q Consensus       445 Lk~C~p~VV~~Fa~ia~~~~l~y~~~~~~~~~~~e~~~~----~~~~~-------------------~~~Ld~fFPFDPy  501 (515)
                      ||+|+|+||.+||+||+++|++||+      +++|+|.+    ...|+                   .++||+|||||||
T Consensus       467 Lk~C~~~Vv~~Fa~ia~~~~l~yc~------~iie~n~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~fFPFDPy  540 (563)
T PF05327_consen  467 LKVCSPSVVREFARIARHLQLVYCY------SIIERNKRSRLSSFRSSSSGMRSRRERPSAAWNESPRQPLDSFFPFDPY  540 (563)
T ss_dssp             HHHS-HHHHHHHHHHHHHTTS---H------HHHHHHHHHHHH---------------------HHHHHHHHH--TTS--
T ss_pred             cCccCHHHHHHHHHHHHHcCcchHH------HHHHhhhhhhhhhccCcccccccccccccccccccccCcCccCCCCCcc
Confidence            9999999999999999999999997      45666533    22221                   1359999999999


Q ss_pred             CcccccccccccC
Q 010207          502 LLKKSDRFANATL  514 (515)
Q Consensus       502 ~L~~S~~~I~p~~  514 (515)
                      +||+|++||+|+|
T Consensus       541 ~L~~S~~~i~~~Y  553 (563)
T PF05327_consen  541 LLPRSKRFIEPLY  553 (563)
T ss_dssp             -SHHHHHHHGGGB
T ss_pred             cchhhHhhcchhc
Confidence            9999999999998

RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.

>KOG2434 consensus RNA polymerase I transcription factor [Transcription]

Probab=100.00  E-value=2.6e-69  Score=566.55  Aligned_cols=441  Identities=43%  Similarity=0.626  Sum_probs=372.7

Q ss_pred             ccccccCcCChHHHHHHHHHHHHHhhcCCchHHHHHHHHhccCCCCCcchHHHHHHHHHHHHccccccCccchHHHHHHH
Q 010207           12 SHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSGRLDPDNRALLETSLKALSGAVSYIDISHHESLLVSI   91 (515)
Q Consensus        12 ~~~~~~~~~s~~~~~~~V~~aL~~~~~Gd~~~Y~~L~~~l~~~~~~~~~~~~~l~~~L~aL~~~Vs~Ld~~~~~~LV~ai   91 (515)
                      ++.+++..++++..+.-|+.++.....|++..|.++..++.-.+. ..+..+++..+++.|++.+.+||...|..|+..+
T Consensus         3 ~~~v~~~~~~~~~~v~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~ida~~~~~l~~i~   81 (500)
T KOG2434|consen    3 SESVDKKDLSDSTLVPTVRKALTSFESGDSDLYSRLVQVMLLKKN-ALDQVAQLETLLKLLSQFVACIDALHHNTLLLIL   81 (500)
T ss_pred             chhhhhhhhccccccchhhhhhccccccchHhhhhHHHHHhhhhc-cCcHHHHHHHHHHHHHhhHHhhcccchhHHHHHH
Confidence            345678889999999999999999999999999999998883222 3366788888999999999999988777766555


Q ss_pred             HcCCCcCCChhHHHHHHHHHHHHHhcccCcHHHHHHHHhhccCCCcccccccCCCCCchhhhhhHHHHHHHHHHHHhHcC
Q 010207           92 FGMSMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVP  171 (515)
Q Consensus        92 l~~~~W~~~~~~v~~y~~Fl~~Lvsa~~~y~~~vl~~LV~~F~p~~~~~~~~~~~~~~~~~~~~~~~~H~~L~~Il~lvP  171 (515)
                      .   .|..++.++.++..|++.|++++++|+.+|+.|+|.+| |++...+          ..+.++++|.+|++|+++||
T Consensus        82 ~---~~~~~~sv~~~~~~~l~~l~~~~~~~l~~c~~~lv~~~-~~~~v~~----------~~~~fe~~H~al~~v~r~vP  147 (500)
T KOG2434|consen   82 S---LRSHRGSVIEALLNLLISLAVTSGKFLSPCLSMLVSNL-SQPSVTE----------QIEHFERAHAALKYILRLVP  147 (500)
T ss_pred             H---hhcCCchHHHHHHHHHHHHHHhCCchHHHHHHHHHHhC-Ccchhhh----------hHHHHHHHHHHHHHHHHHcc
Confidence            4   46888899999999999999999999999999999999 7765332          26789999999999999999


Q ss_pred             CChhhhHHHHHhcCCCCcCccccccchhhhHHHHHHhhhccchhhHHHHHHHHHHHHHHhhccccccccccccccccccc
Q 010207          172 LAPTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDDFSKGIF  251 (515)
Q Consensus       172 ~a~~~L~~~l~~~FP~~~~~~~~~~~h~~Yv~NlL~l~~y~~~p~L~~~il~lIi~rli~iDVei~~ddi~~d~~~~~if  251 (515)
                      ++|++|.|+|.+.||+++++...+   ++|++|+|++.+|.  |.++.+||++|++|++++||++.+||     ++.|.|
T Consensus       148 ~~~~~l~~~L~~~~p~~~k~~~~~---~~YvsNll~l~~y~--~~l~~~ile~vierl~~~Dv~~~~dd-----s~~~~~  217 (500)
T KOG2434|consen  148 LAPSFLLPILAQVMPKKDKKDRTL---VTYVSNLLKLENYG--PSIGKDILEAVIERLIDLDVEIETDD-----SSSGMF  217 (500)
T ss_pred             CchhhHHHHHHHHccccccchhhH---HHHHhHHHHHHhhh--hHHHHHHHHHHHHHHHhhceeeeecc-----cccccc
Confidence            999999999999999999998666   99999999999985  99999999999999999999887776     677899


Q ss_pred             cccchhhhhhcccccccCCCCCCCchhhcccchhhHHHHHHHHHHHHHHHhhhhccCCccc-------------------
Q 010207          252 EMELEDVEEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRLI-------------------  312 (515)
Q Consensus       252 ~me~dd~~~~~~d~e~~~de~~~~~~~~~~~~~~~~a~kLD~lm~~lf~~l~~~~~~~~l~-------------------  312 (515)
                      +|+.++..+.+--+   +++-..  ..+-..++..++.+||.+|...|.|++.|.++++++                   
T Consensus       218 d~~~~~~~~~e~~~---G~~~~~--~~~~t~~~~~~s~~ld~~l~~~~~~l~s~~~~~~l~~vf~~l~~~fe~~vL~t~~  292 (500)
T KOG2434|consen  218 DMETDDAEELETFS---GMERNQ--ANPVTIGITRLSTLLDKLLVESFRHLESCLNDGSLDEVFNTLLNEFENTVLNTVA  292 (500)
T ss_pred             ccccchHHHHHhhc---cccccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhHHHhhhHHHH
Confidence            99887766543110   111111  111234678899999999999999999998887544                   


Q ss_pred             ----eeeeeeeecCCccchhHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHhhh
Q 010207          313 ----EFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNI  388 (515)
Q Consensus       313 ----~FllFy~cs~~~~~~~~~F~~~L~~~~~~~~~~~~~R~aAaaYLaSflARAk~v~~~~v~~~l~~L~~w~~~Y~~~  388 (515)
                          ||+|||+||+++++ +++|++.||++.++|+.|..+||+|+                   +|+++++.|++.|+.+
T Consensus       293 ~~~~qf~~fy~~sld~~~-~~~fL~~L~~v~~~~~~pa~tr~~a~-------------------~~l~~l~~w~~~Yv~~  352 (500)
T KOG2434|consen  293 TRFVQFLIFYACSLDETL-EEAFLSKLWKVCLSPNNPAETRQAAA-------------------TCLELLVIWLDIYVIE  352 (500)
T ss_pred             hhhhheEEEeecccchHH-HHHHHHHHHHHHhCcccHHHHHhhhh-------------------HHHHHHHHHHHHHHHh
Confidence                49999999999775 56999999999999999999999998                   2999999999999999


Q ss_pred             hCCCCCC---CchhHHHHHHHHHHHHHhhhccccccCchhhhhhhccchhHhhccCCCCcccccHHHHHHHHHHhhhccc
Q 010207          389 LGGDINP---KAHRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARL  465 (515)
Q Consensus       389 ~~~~~~~---~~h~~FYs~cQA~~YIfCFR~~dL~~~~~~~~~l~~~~l~rii~s~LNPLk~C~p~VV~~Fa~ia~~~~l  465 (515)
                      ++.+..+   .+|++|||+|||+||+|||||+.++..++..+--+.++++|+++|+|||||+|+|+||.+|+++|+++||
T Consensus       353 ~~~~~~~~g~~~h~~fysgcqa~~y~f~fR~~~~~~~~~~~~~e~~~~f~riv~s~lnPlk~c~~~vv~~F~~ia~~~~l  432 (500)
T KOG2434|consen  353 LSKGTKPIGLMKHSVFYSGCQAEFYRFCFRYRHLVKDDDSEELEQEMEFERIVSSKLNPLKYCSPSVVLQFAAIANALTL  432 (500)
T ss_pred             hcccccccchhhcccccccCcceeeeeeeeehhhcccCchhhhccccchhhhhccccccccccCHHHHHHHHhhcCcceE
Confidence            9886666   9999999999999999999999999987765422458999999999999999999999999999999999


Q ss_pred             ceeecccccchhhhhhhhhccCCcccCcccCCCCCCCcccccccccccC
Q 010207          466 FTVSETFVFNDLLESELSRAFGGLERLDMFFPFDPCLLKKSDRFANATL  514 (515)
Q Consensus       466 ~y~~~~~~~~~~~e~~~~~~~~~~~~Ld~fFPFDPy~L~~S~~~I~p~~  514 (515)
                      +||++.+++.+..+....+++||            |.|++|+.+|.|++
T Consensus       433 ~~~~~iie~~~~~~~~~~r~~~d------------~~lk~ss~~~~p~~  469 (500)
T KOG2434|consen  433 FYCFSIIEFNDLQISELSRAFGD------------CLLKESSSFISPNF  469 (500)
T ss_pred             EEEchhhhccchhhhhhhhhccc------------hhhhhcccccCchh
Confidence            99985443333323333444443            99999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	515
3tj1_A	649	Crystal Structure Of Rna Polymerase I Transcription		3e-07

>pdb|3TJ1|A Chain A, Crystal Structure Of Rna Polymerase I Transcription Initiation Factor Rrn3 Length = 649

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 102/271 (37%), Gaps = 59/271 (21%)
Query: 291 LDSLMVL---------TFEHLESCEGTG-------------------RLIEFVMFYACAL 322
           LDS++ L         T E LES EG G                   R I+++MF+    
Sbjct: 354 LDSILTLVSTHVEEQVTPESLESGEGVGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQ 413
Query: 323 DPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLSPCFIVSLLKRLVDWC 382
             E     F   L D+  +       ++ ++ YL S+++RA+ LS   I+ +   L  W 
Sbjct: 414 QLELMD-SFLVTLIDISFAVNEAAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWL 472
Query: 383 LEYCNILGGDINPKA----HRVFYSGCQAIMYVLCFRMRSIMDIPRLKSQLLLMPLETVL 438
             Y      +++ +      + FY+  QA+ Y+ CFR     D        L    + ++
Sbjct: 473 NRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDTDGNWECELDKFFQRMV 532
Query: 439 KHDLNPLKVCLPSVV---SEFLQQSKAARLFTVSETFVFNDLLESELSRAFGGLER---- 491
               NPLK C  +V+   +   QQ   A  F++ E    N+ L   + +A    +     
Sbjct: 533 ISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIEN-NNNERLRGIIGKADSDKKENSAQ 591
Query: 492 ------------------LDMFFPFDPCLLK 504
                             L  +FP+DP  LK
Sbjct: 592 ANTTSSSWSLATRQQFIDLQSYFPYDPLFLK 622

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	515
3tj1_A	649	RNA polymerase I-specific transcription initiatio	8e-99
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08

>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae} Length = 649

 Score =  311 bits (796), Expect = 8e-99
 Identities = 107/590 (18%), Positives = 196/590 (33%), Gaps = 113/590 (19%)

Query: 11  ESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHL-SGRLDPDNRALLETSL 69
           +  E++D   S       V+ AL  +   D+     +   + L S   +  N   L   L
Sbjct: 60  QPEEIKDEVFSAAMYSRFVKSALDDLDKNDSTQIGIIANQVALPSKNPERINDKNLNILL 119

Query: 70  KALSGAVSYIDISHHESLLVSIFGMSMW-NYDPDVMDALKGLIISLAASNGKYVDSCLTM 128
             LS  ++ I+ S    L+ SI     W    P  +      I  L +S  K+      +
Sbjct: 120 DILSSNINRIESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIPKWWQDVSMI 179

Query: 129 LVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLAPTRLLPIVVQRMPTV 188
           LVS F  P                       H  LK    ++P +   +   + +  P  
Sbjct: 180 LVSCFILPIKQTV----------------CHHDMLKYFLRMIPSSMGFIDTYLAKFFP-- 221

Query: 189 HNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWDDILHDD--F 246
            NK++  + +V Y  N LKL        +   +   +++++I +D+E+  +    DD   
Sbjct: 222 -NKNDTRRKLVNYTSNLLKLRGYC--SELGFQIWSLLIEKIISIDVELQNELDELDDDVD 278

Query: 247 SKGIFEMELEDVEEAADDA-------------------------------EQVGDELPSG 275
              + E++LED ++  DD+                                  G +    
Sbjct: 279 DDDLEEVDLEDDDDLDDDSGDDDDENCGNSNEELRSGAADGSQSDSEDMDIIEGMDGTEE 338

Query: 276 SLSRKSLSGNLIAELLDSLMVLTFEHLESCEGTGRL------------------------ 311
                +     ++  LDS++ L   H+E       L                        
Sbjct: 339 YNVELTQGIKELSTKLDSILTLVSTHVEEQVTPESLESGEGVGVFNTLTTLFKTHVLPTY 398

Query: 312 ----IEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSAVSYLASFLSRARFLS 367
               I+++MF+      E     F   L D+  +       ++ ++ YL S+++RA+ LS
Sbjct: 399 YTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEKKIKSLQYLGSYIARAKKLS 457

Query: 368 PCFIVSLLKRLVDWCLEYCNILGGDIN----PKAHRVFYSGCQAIMYVLCFRMRSIMDIP 423
              I+ +   L  W   Y      +++     +  + FY+  QA+ Y+ CFR     D  
Sbjct: 458 RTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDTD 517

Query: 424 RLKSQLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLF----------------- 466
                 L    + ++    NPLK C  +V+  F + ++   +                  
Sbjct: 518 GNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIENNNNERLRGI 577

Query: 467 --TVSETFVFNDLLESELSRAFGGLER-----LDMFFPFDPCLLKKSDRF 509
                     N    +  S ++    R     L  +FP+DP  LK     
Sbjct: 578 IGKADSDKKENSAQANTTSSSWSLATRQQFIDLQSYFPYDPLFLKNYKIL 627

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 7e-08
 Identities = 77/518 (14%), Positives = 156/518 (30%), Gaps = 145/518 (27%)

Query: 9   HAESHEMEDVNISDLELVYHVREALTSVQSGDNDNYNQLVAV--MHLSGRLDPDNRALLE 66
           + ++      N+S L+    +R+AL  ++   N      V +  +  SG+          
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN------VLIDGVLGSGK---------- 163

Query: 67  TSLKALSGAVSYIDISHHESLLVSIFGMSMWNY--DPDVMDALKGLIISLAASNGKYVDS 124
           T + AL   +SY      +     IF +++ N      V++ L+ L+  +        D 
Sbjct: 164 TWV-ALDVCLSYKVQCKMDF---KIFWLNLKNCNSPETVLEMLQKLLYQI--------DP 211

Query: 125 CLTMLVSNFTPPSYFLDKLKEP---HGLERKHQ----VLSRV-HAALKSIFDL---VPLA 173
             T    + +     +  ++         + ++    VL  V +A   + F+L   + L 
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LL 270

Query: 174 PTRLLPIVVQRMPTVHNKHERLKMIVVYM--ENTLKLESSAMG----ELVR-----STLL 222
            TR    V   +      H  L    + +  +    L    +     +L R     +   
Sbjct: 271 TTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 223 MAVVDRLIDLDMEIGWDDILHDDFSK------------------------GIFEMELEDV 258
           ++++   I  D    WD+  H +  K                         +F       
Sbjct: 330 LSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP---PSA 385

Query: 259 ------------EEAADDAEQVGDELPSGSLSRKSLSGNLIAELLDSLMVLTFEHLESCE 306
                       +    D   V ++L   SL  K    + I     S+  +  E     E
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-----SIPSIYLELKVKLE 440

Query: 307 GTG----RLIEFVMFYACALDPENCGLRFATM---------LADVFVSGLYPPLTRMSAV 353
                   +++         D ++    +            L ++           +   
Sbjct: 441 NEYALHRSIVDHYNIPKT-FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--- 496

Query: 354 SYLA-SFLS---RARFLSPCFIVSLLKRLVDWCLE-YCN-ILGGDINPKAHRVFYSGCQA 407
            +L   FL    R    +     S+L  L    L+ Y   I   D +PK  R        
Sbjct: 497 -FLDFRFLEQKIRHDSTAWNASGSILNTLQQ--LKFYKPYIC--DNDPKYER-------- 543

Query: 408 IMYVLCFRMRSIMD-IPRLKSQLLLMPLETVLKHDLNP 444
                   + +I+D +P+++  L+      +L+  L  
Sbjct: 544 -------LVNAILDFLPKIEENLICSKYTDLLRIALMA 574

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	515
3tj1_A	649	RNA polymerase I-specific transcription initiatio	100.0

>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-122  Score=1007.56  Aligned_cols=470  Identities=22%  Similarity=0.315  Sum_probs=391.3

Q ss_pred             ccCcCChHHHHHHHHHHHHHhhcCCchHHHHHHHHhccCC-CCCcchHHHHHHHHHHHHccccccCccchHHHHHHHHcC
Q 010207           16 EDVNISDLELVYHVREALTSVQSGDNDNYNQLVAVMHLSG-RLDPDNRALLETSLKALSGAVSYIDISHHESLLVSIFGM   94 (515)
Q Consensus        16 ~~~~~s~~~~~~~V~~aL~~~~~Gd~~~Y~~L~~~l~~~~-~~~~~~~~~l~~~L~aL~~~Vs~Ld~~~~~~LV~ail~~   94 (515)
                      ++.+||++++++|||+||+++++||+++|+.|+++|+.+. ..++.++++|..||++|++|||+||+++|++||++||++
T Consensus        65 ~~~~~s~~~~~~~V~~AL~~~~~Gd~~~Yd~L~~~~~~~~~~~d~~~~~~L~~~L~aLs~~Vs~Ld~~~~~~LV~aIL~~  144 (649)
T 3tj1_A           65 KDEVFSAAMYSRFVKSALDDLDKNDSTQIGIIANQVALPSKNPERINDKNLNILLDILSSNINRIESSRGTFLIQSIINF  144 (649)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCTTCTTSCCHHHHHHHHHHHHHTGGGGCSGGGHHHHHHHHTC
T ss_pred             chHHhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCcCcCcCCHHHHHHHHHHHHhhhhhcCchhHHHHHHHHhCC
Confidence            4678999999999999999999999999999999999654 556678899999999999999999988999999999999


Q ss_pred             -CCcCCChhHHHHHHHHHHHHHhcccCcHHHHHHHHhhccCCCcccccccCCCCCchhhhhhHHHHHHHHHHHHhHcCCC
Q 010207           95 -SMWNYDPDVMDALKGLIISLAASNGKYVDSCLTMLVSNFTPPSYFLDKLKEPHGLERKHQVLSRVHAALKSIFDLVPLA  173 (515)
Q Consensus        95 -~~W~~~~~~v~~y~~Fl~~Lvsa~~~y~~~vl~~LV~~F~p~~~~~~~~~~~~~~~~~~~~~~~~H~~L~~Il~lvP~a  173 (515)
                       +||.+++.++++|++||++||||||+|+++|++|||++|+|++.                ...++|.+|++|+++||++
T Consensus       145 ~~W~~r~~~~v~~Y~~FL~~LvSa~~~yl~~vl~mLV~~F~~~~~----------------~~~~~H~~L~~Il~lvP~s  208 (649)
T 3tj1_A          145 EKWWELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIK----------------QTVCHHDMLKYFLRMIPSS  208 (649)
T ss_dssp             TTGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHGGGSCHH----------------HHHHHHHHHHHHHHHCGGG
T ss_pred             chhccCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCCc----------------ccHHHHHHHHHHHHHcCCC
Confidence             99999999999999999999999999999999999999998643                1357999999999999999


Q ss_pred             hhhhHHHHHhcCCCCcCccccccchhhhHHHHHHhhhccchhhHHHHHHHHHHHHHHhhccccccc-ccccccccccccc
Q 010207          174 PTRLLPIVVQRMPTVHNKHERLKMIVVYMENTLKLESSAMGELVRSTLLMAVVDRLIDLDMEIGWD-DILHDDFSKGIFE  252 (515)
Q Consensus       174 ~~~L~~~l~~~FP~~~~~~~~~~~h~~Yv~NlL~l~~y~~~p~L~~~il~lIi~rli~iDVei~~d-di~~d~~~~~if~  252 (515)
                      +++|.++|+++|||+++++   +.|++||+|||+|++||  |+||++||++||+|||+||||||+| |..+|+..+++++
T Consensus       209 ~~~L~~iL~~~FP~~~~s~---~~~~~Yv~NLLrl~~Y~--PeL~~~Il~LIierlikiDVeiq~eledldDd~~~~~~~  283 (649)
T 3tj1_A          209 MGFIDTYLAKFFPNKNDTR---RKLVNYTSNLLKLRGYC--SELGFQIWSLLIEKIISIDVELQNELDELDDDVDDDDLE  283 (649)
T ss_dssp             HHHHHHHHHHTCCCTTSCH---HHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHhCCCCCCch---hHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHhhhccccchhhccchhhhhhhh
Confidence            9999999999999999998   45699999999999998  9999999999999999999999996 3344444444554


Q ss_pred             ccchhh--------hhhc---------------ccccccC-C-----CCCCCchh---hcccchhhHHHHHHHHHHHHHH
Q 010207          253 MELEDV--------EEAA---------------DDAEQVG-D-----ELPSGSLS---RKSLSGNLIAELLDSLMVLTFE  300 (515)
Q Consensus       253 me~dd~--------~~~~---------------~d~e~~~-d-----e~~~~~~~---~~~~~~~~~a~kLD~lm~~lf~  300 (515)
                      ++++++        +++.               +|+++++ |     +...++++   .+..+++++++|||+||.++|+
T Consensus       284 ~~~~~~~~~~~~~dd~~~~~~~~~~~~~~~~~~~d~~~~~~dd~~~de~~d~~~e~~~~~~~~i~~~~~KLD~im~llf~  363 (649)
T 3tj1_A          284 EVDLEDDDDLDDDSGDDDDENCGNSNEELRSGAADGSQSDSEDMDIIEGMDGTEEYNVELTQGIKELSTKLDSILTLVST  363 (649)
T ss_dssp             ------------------------------------------------------------CGGGHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhhccccccccccccccccccccccccccccccccchhhcchhhhhhHHHHHHHHHHHHHHHHH
Confidence            432210        0000               0011111 0     00111122   1345789999999999999999


Q ss_pred             HhhhhccCC----------------------------ccceeeeeeeecCCccchhHHHHHHHHHHHhcCCCChhhhhhH
Q 010207          301 HLESCEGTG----------------------------RLIEFVMFYACALDPENCGLRFATMLADVFVSGLYPPLTRMSA  352 (515)
Q Consensus       301 ~l~~~~~~~----------------------------~l~~FllFy~cs~~~~~~~~~F~~~L~~~~~~~~~~~~~R~aA  352 (515)
                      |++++++++                            +..||||||+||++|++++ +|+++||+++++||+|+++||+|
T Consensus       364 ~~~~~~~~~~l~~~~~~~lf~~Ll~~F~~~ILpT~~sr~vQFl~Fy~cs~~~~~~~-~Fl~~L~~~~~~~~~~~~~RqaA  442 (649)
T 3tj1_A          364 HVEEQVTPESLESGEGVGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLELMD-SFLVTLIDISFAVNEAAEKKIKS  442 (649)
T ss_dssp             HHHHHSCHHHHHSSTHHHHHHHHHHHHHHTTTTSCSCSSTTHHHHHHHTTSHHHHH-HHHHHHHHHHHCSSSCHHHHHHH
T ss_pred             HHhhhcCCCccccchHHHHHHHHHHHHHHhccccccCccHHHHHHHHHhCCHHHHH-HHHHHHHHHHhCCCCcHHHHHHH
Confidence            999987543                            2345999999999999986 99999999999999999999999


Q ss_pred             HHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHhhhhCC----CCCCCchhHHHHHHHHHHHHHhhhccccccCc-hhhh
Q 010207          353 VSYLASFLSRARFLSPCFIVSLLKRLVDWCLEYCNILGG----DINPKAHRVFYSGCQAIMYVLCFRMRSIMDIP-RLKS  427 (515)
Q Consensus       353 aaYLaSflARAk~v~~~~v~~~l~~L~~w~~~Y~~~~~~----~~~~~~h~~FYs~cQA~~YIfCFR~~dL~~~~-~~~~  427 (515)
                      |+|||||||||||||.++|+.++++|++||++|+.++++    ..++++|++|||+|||+|||||||||+|++.+ +|..
T Consensus       443 aaYLaSflARAk~v~~~~v~~vl~~L~~wl~~Yi~~~~~~~~~~~~~~~~~~FYs~cQA~fYIfCFR~rdL~~~~~~w~~  522 (649)
T 3tj1_A          443 LQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDTDGNWEC  522 (649)
T ss_dssp             HHHHHHHHHHBTTCCHHHHHHHHHHHHHHHHHHHHHHGGGTTSSSCGGGGHHHHHHHHHHHHHHHHHGGGGBCTTSCBGG
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccccCCccHHHHhHHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence            999999999999999999999999999999999987654    33679999999999999999999999999865 5666


Q ss_pred             hhhccchhHhhccCCCCcccccHHHHHHHHHHhhhcccceeecccccchhhhhhhhhc----cC----------------
Q 010207          428 QLLLMPLETVLKHDLNPLKVCLPSVVSEFLQQSKAARLFTVSETFVFNDLLESELSRA----FG----------------  487 (515)
Q Consensus       428 ~l~~~~l~rii~s~LNPLk~C~p~VV~~Fa~ia~~~~l~y~~~~~~~~~~~e~~~~~~----~~----------------  487 (515)
                      +++ ++|+|+|+|||||||+|+|+||.+||+|||++||+||+      +++|+|.+..    .|                
T Consensus       523 ~l~-~~l~riv~s~LNPLk~C~p~VV~eFA~ia~~~~l~YCy------~iiE~NkR~rl~~~~~~~~~~~~~~~~~~~~~  595 (649)
T 3tj1_A          523 ELD-KFFQRMVISKFNPLKFCNENVMLMFARIAQQESVAYCF------SIIENNNNERLRGIIGKADSDKKENSAQANTT  595 (649)
T ss_dssp             GHH-HHHHHHHHSTTCHHHHSCHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHC-------------------
T ss_pred             hHh-hhHHHHhcCCCCCcccCCHHHHHHHHHHHHHcCeEeeh------HhhhcccccccccccccccCCccccccccccc
Confidence            663 67999999999999999999999999999999999998      4677664321    11                


Q ss_pred             ----------CcccCcccCCCCCCCcccccccccccC
Q 010207          488 ----------GLERLDMFFPFDPCLLKKSDRFANATL  514 (515)
Q Consensus       488 ----------~~~~Ld~fFPFDPy~L~~S~~~I~p~~  514 (515)
                                ++++||+|||||||+||||++||+|+|
T Consensus       596 ~~~~~~~~~~~~~~Ld~fFPFDPy~L~~Sk~~i~~~Y  632 (649)
T 3tj1_A          596 SSSWSLATRQQFIDLQSYFPYDPLFLKNYKILMKEYY  632 (649)
T ss_dssp             -CCCCHHHHHHHHHHHHCCTTSCCCSHHHHHHHGGGB
T ss_pred             ccccccccccccCcCcCCCCCCCcccccchhhhchhc
Confidence                      124799999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00