Citrus Sinensis ID: 010223

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
Protein Sequence
MSSSPVEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQLAFSSALSFASSPPQPKRPVPPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQLKSEITFYIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDKDISNQLLSPTDMRVDSKYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQAC
Secondary Structure (PSIPRED)
ccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHEccccHHHHHEHHEHHHHHccccEEEEEcEEEccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mssspvepetvvknrHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQLAFSsalsfassppqpkrpvpplrLAFSLLsswspdfrRRAVVSFTLMLFVAVAAASGFLSVASVCwlegfdgveLFWRVGFRGFVCGLLYAFFYVYKQRwvlefpiiqrppffsfkmsLPSAIKKALKLSGAAYLFSALPVVFLADQLKSEITFYIGTFAVFLCWELDHHlhqvlhtkrfmfappkgsaaaetnpsepllaaleestpSSLLQYLAYLDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQLATKLgegmeagsvdkdisnqllsptdmrvdskyseeLNNFQLCSWCARTAASLTvhshkedrfgvaqlsgsNIDVISTLLSCLLAVEAFmgkktnlqaphhlmgpagikwaqlntgrrdtgmvkkrggllhsKAFAMADVLRTSIYCIISAFHDEMISSAKAgvlekdwlvsgkplfgtRELLLQKLRLFLDFQAC
Flexible Loop (DISEMBL)
mssspvepETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQLAFSSALSFASSPPQPKRPVPPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQLKSEITFYIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQLATKLgegmeagsvdkdisnqllspTDMRVDSKYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQAC
Low Complexity Region (SEG)
MSSSPVEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSIltflltlstfHVsqlafssalsfassppqpkrpvppLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQLKSEITFYIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDKDISNQLLSPTDMRVDSKYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRElllqklrlflDFQAC
Disordered region (IsUnstruct)
**********VVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQLAFSSAL***************LRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQLKSEITFYIGTFAVFLCWELDHHLHQVLHTKRFMFA**************************SLLQYLAYLDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQLAT********************************EELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDF***
Disordered Region (DISOPRED)
**********VVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQLAFSSALSFASSPPQPKRPVPPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQLKSEITFYIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQLATKL*********************************NNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFM*************************************GLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLE*DWLVSGKPLFGTRELLLQKLRLFLDFQ**
Disordered Region (DISEMBL)
**********VVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQLAFSSA*************VPPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQLKSEITFYIGTFAVFLCWELDHHLHQVLHTKRFMFAPP*********PSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDKDISNQLLSPTDMRVDSKYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQAC
Disordered Region (DISPRO)
*****VEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQLAFSSALSFASSPPQPKRPVPPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQLKSEITFYIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSA**ETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDKDISNQLLSPTDMRVDSKYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQAC
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSSPVEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQLAFSSALSFASSPPQPKRPVPPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQLKSEITFYIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDKDISNQLLSPTDMRVDSKYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQAC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
255574436	528	conserved hypothetical protein [Ricinus	0.964	0.939	0.646	1e-170
224057170	531	predicted protein [Populus trichocarpa]	0.961	0.930	0.607	1e-169
449433615	553	PREDICTED: uncharacterized protein LOC10	0.984	0.915	0.592	1e-169
225462638	530	PREDICTED: uncharacterized protein LOC10	0.972	0.943	0.613	1e-162
356555508	494	PREDICTED: uncharacterized protein LOC10	0.931	0.969	0.579	1e-156
297842069	519	hypothetical protein ARALYDRAFT_476456 [	0.988	0.978	0.568	1e-154
53749487	612	hypothetical protein SDM1_56t00017 [Sola	0.976	0.820	0.527	1e-152
18410306	519	uncharacterized protein [Arabidopsis tha	0.988	0.978	0.564	1e-150
20466306	519	unknown protein [Arabidopsis thaliana] g	0.984	0.974	0.562	1e-150
356549124	495	PREDICTED: uncharacterized protein LOC10	0.929	0.965	0.577	1e-148

>gi|255574436|ref|XP_002528131.1| conserved hypothetical protein [Ricinus communis] gi|223532470|gb|EEF34261.1| conserved hypothetical protein [Ricinus communis]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 340/526 (64%), Positives = 385/526 (73%), Gaps = 30/526 (5%)

Query: 9   ETVVKNRHLGFLIWQSIPSTAIFLLFKLLV-LSPRCSILTFLLTLSTFHVSQLAFSSALS 67
           E VVKNR LGF+IWQSI ST IF+LFK +  L  + S L  LL    F +SQL FS  LS
Sbjct: 11  EAVVKNRFLGFMIWQSITSTFIFILFKTITTLYSQSSFLFSLLAFLIFEISQLLFSVFLS 70

Query: 68  FASSPPQPKRPVPPLRLAFSLL--------SSWSPDFRRRAVVSFTLMLFVAVAAASGFL 119
             SSP +   PV    L+F+ L        S  S DFR R  +S  L LF+  A+ SGFL
Sbjct: 71  IPSSP-KSYSPVSAFHLSFAFLRFLFVSGDSFSSVDFRHRFNLSLRLFLFLVAASLSGFL 129

Query: 120 SVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSL 179
           S+  +C    +  +         GF  GL YA +Y+YKQRW+LEFPIIQRP F+SFKMSL
Sbjct: 130 SLLCLCGSRNYGFIS--------GFGFGLFYAGYYIYKQRWILEFPIIQRPLFYSFKMSL 181

Query: 180 PSAIKKALKLSGAAYLFSALPVVFLADQLKS----------EITFYIGTFAVFLCWELDH 229
           P A+K+ALKLS  AYLF A+ +VFL +QLKS          +I    G+FAVFLCWEL H
Sbjct: 182 PLAVKQALKLSSVAYLFLAVLLVFLPNQLKSYVTMGEFVSEQIILSSGSFAVFLCWELSH 241

Query: 230 HLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVD 289
           HLHQVLHTKRF+FAPP GSAAAETNPSEPLLAALEESTP SL QYLAYLDLCMVCENNVD
Sbjct: 242 HLHQVLHTKRFVFAPPIGSAAAETNPSEPLLAALEESTPCSLPQYLAYLDLCMVCENNVD 301

Query: 290 TWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDKDI--SNQLLSPTDMRV 347
           TWRRAAFFEET ETY+RVI V L+PL+ L   L EG E+ SVD     SNQL   TD ++
Sbjct: 302 TWRRAAFFEETGETYKRVIAVCLRPLEHLTCTLAEGFESHSVDNAYQQSNQLQPQTDSQL 361

Query: 348 DSKYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAF 407
           DSK  E LNNFQ C+WCART A LT  SH EDRFGVAQLSGSN  V+STLLSCLLAVEAF
Sbjct: 362 DSKCYELLNNFQQCAWCARTVAFLTARSHTEDRFGVAQLSGSNAAVVSTLLSCLLAVEAF 421

Query: 408 MGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCII 467
           MGKKTNLQA H LMGP GIKWA LNTGRRD  +VKKR G  +SKA+A+ADVLRTSIY I+
Sbjct: 422 MGKKTNLQASHQLMGPVGIKWATLNTGRRDIAVVKKRSGPTYSKAYAIADVLRTSIYYIV 481

Query: 468 SAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQA 513
           SAFHDEM++S KAG+LEKDWL+S KPL GTRELLLQKLRLFLDF+A
Sbjct: 482 SAFHDEMLTSDKAGLLEKDWLISSKPLLGTRELLLQKLRLFLDFRA 527

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057170|ref|XP_002299154.1| predicted protein [Populus trichocarpa] gi|222846412|gb|EEE83959.1| predicted protein [Populus trichocarpa]

 Score =  602 bits (1552), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 327/538 (60%), Positives = 378/538 (70%), Gaps = 44/538 (8%)

Query: 8   PETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQLAFSSALS 67
           PE V KNR LGFLIWQ+  ST I+ L KL +L+          T   F  SQL FS    
Sbjct: 5   PELVSKNRFLGFLIWQTFTSTTIYFLTKLFLLA--------FFTTPKFSPSQLCFSLLKF 56

Query: 68  FA-------------SSPPQPKRP-VPPLRLAFSLL------SSWSPDFRRRAVVSFTLM 107
           F                      P   PL+LA  L+      S   P+FRRRA+VS   +
Sbjct: 57  FTFTFSNLLFSSSLSILSSPQSLPYASPLQLAAGLVRFAFVSSPAEPEFRRRALVSARFV 116

Query: 108 LFVAVAAASGFLSVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPII 167
           +FV VA  SG LSV  +C   GFDG +L  R+GFRGFV G+LY  F VYK+RWVLEFPII
Sbjct: 117 VFVVVAGISGALSVVCLC---GFDGFQLIARLGFRGFVFGVLYGLFDVYKKRWVLEFPII 173

Query: 168 QRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQLKS----------EITFYIG 217
           QRP F+SFKM LP AIK+ALKLS  AYLF ++  VFL +Q KS          +I  YIG
Sbjct: 174 QRPLFYSFKMGLPLAIKRALKLSNVAYLFLSVLQVFLPEQFKSGGTMGQFITEQIILYIG 233

Query: 218 TFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAY 277
           +F+V  CWEL HHLHQVLHTKRF+FAPPKGSAAAETNPSEPLLAALEES P SL QYLAY
Sbjct: 234 SFSVVFCWELSHHLHQVLHTKRFLFAPPKGSAAAETNPSEPLLAALEESIPDSLPQYLAY 293

Query: 278 LDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDK--DI 335
           LDLCMVCENNVDTWRRAAFFEET ETY+RV+   L+PL+QLA+ L EG+E   VDK   +
Sbjct: 294 LDLCMVCENNVDTWRRAAFFEETGETYKRVVAACLRPLEQLASNLSEGLEGCFVDKAHQL 353

Query: 336 SNQLLSPTDMRVDSKYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVIS 395
           SNQL SPTD ++DS++ E LNNFQ  +WCAR  ASLT  SH+EDRFGVAQL+GSN  V S
Sbjct: 354 SNQLQSPTDSQLDSRHCEPLNNFQKYAWCARAVASLTAWSHEEDRFGVAQLTGSNAAVTS 413

Query: 396 TLLSCLLAVEAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAM 455
           TL+S LLAVEAFMGKKT+LQ P HLMGPA IKW   NTGRRD    KK+GG  H+KA+AM
Sbjct: 414 TLISSLLAVEAFMGKKTSLQ-PQHLMGPAAIKWNTPNTGRRDVVTTKKQGGPQHAKAYAM 472

Query: 456 ADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQA 513
           ADVLRTS+Y I+S FHDEM +S KAG+ EKDW++  KPLFGT ELL+QKL  FLDF+A
Sbjct: 473 ADVLRTSVYSIVSTFHDEMFTSNKAGLFEKDWVIKSKPLFGTYELLVQKLHHFLDFRA 530

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433615|ref|XP_004134593.1| PREDICTED: uncharacterized protein LOC101219057 [Cucumis sativus] gi|449490580|ref|XP_004158646.1| PREDICTED: uncharacterized LOC101219057 [Cucumis sativus]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 330/557 (59%), Positives = 390/557 (70%), Gaps = 51/557 (9%)

Query: 2   SSSPV--EPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLS------------------P 41
           SSSP    PE VVKNR LGFLIWQ IPST +F LFK+ V +                  P
Sbjct: 3   SSSPFFGPPEMVVKNRFLGFLIWQFIPSTVVFFLFKIFVSAISSVSVTNSSAGTRDPSAP 62

Query: 42  RCSILTFLLTLSTFHVSQLAFSSALSFASSPPQPKRPVPPLRLAFSLL------------ 89
             S+LT  LT  TFH+SQL FSS+LS  +SP Q +RP  PL L F L+            
Sbjct: 63  FASLLTGFLTFLTFHLSQLLFSSSLSLLASP-QLERPAAPLELVFGLVRFLVVSGGDNAS 121

Query: 90  -SSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWRVGFRGFVCGL 148
            +S   DFRRRA+VSF L+LFV   A SG L+  S+CW +  DG+   W +G    + GL
Sbjct: 122 SASALKDFRRRAMVSFYLVLFVVATAVSGSLAAVSICWGKS-DGLRSAWHMGL---LMGL 177

Query: 149 LYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQL 208
           +Y  FYVYK+RWVL FPIIQRPPFFSFKM  PSA   A KLS A +LFSA+ +V L DQ 
Sbjct: 178 IYGCFYVYKKRWVLMFPIIQRPPFFSFKMGFPSATTLASKLSAATFLFSAVLMVLLPDQH 237

Query: 209 KSEIT----------FYIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPSEP 258
           K  +T           +IG+FAVFL WEL HHLH+VLHTKRF FAPPKGSAAAETNPSE 
Sbjct: 238 KKNVTVRKFIGNQTILFIGSFAVFLSWELTHHLHRVLHTKRFAFAPPKGSAAAETNPSEH 297

Query: 259 LLAALEESTPSSLLQYLAYLDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQL 318
           L AALE+S   SLLQYLA+LDLCMVCE NVD WRRAAFFEET +TY+RVI++SL+PL+Q 
Sbjct: 298 LFAALEDSNSGSLLQYLAFLDLCMVCETNVDIWRRAAFFEETGDTYKRVISISLRPLEQF 357

Query: 319 ATKLGEGMEAGSVD--KDISNQLLSPTDMRVDSKYSEELNNFQLCSWCARTAASLTVHSH 376
           A  LG+G+E G++D    +S QLL P D   D K  + L NFQL +WCART ++LT  SH
Sbjct: 358 ALNLGQGLE-GAMDMTSQLSRQLLPPNDSHFDVKQLKALKNFQLYAWCARTVSTLTARSH 416

Query: 377 KEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRR 436
            EDRFGVAQLSGSN  V+STLLSCLLAVE  MGKKTNLQ+ H+L GPAGIKWA  +  R 
Sbjct: 417 VEDRFGVAQLSGSNATVMSTLLSCLLAVEVLMGKKTNLQSSHNLFGPAGIKWATSSIRRV 476

Query: 437 DTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFG 496
           D  + KK+ G LHSKA+A+ADVLR SIY I++AFH+EM++SAK+GVLEKDW+   KP FG
Sbjct: 477 DASVGKKKNGPLHSKAYAIADVLRVSIYLIVTAFHNEMVNSAKSGVLEKDWITDEKPPFG 536

Query: 497 TRELLLQKLRLFLDFQA 513
           TRELLLQKL +FLDFQA
Sbjct: 537 TRELLLQKLHIFLDFQA 553

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462638|ref|XP_002267109.1| PREDICTED: uncharacterized protein LOC100256014 [Vitis vinifera] gi|297742780|emb|CBI35460.3| unnamed protein product [Vitis vinifera]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 324/528 (61%), Positives = 391/528 (74%), Gaps = 28/528 (5%)

Query: 11  VVKNRHLGFLIWQSIPSTAIFLLFKL-LVLSPRCSILTFLLTLS--TFHVSQLAFSSALS 67
           +VK R LGFLIWQS+ ST IF+LF   L  +   S+ + L  LS  TFH+S L FS++LS
Sbjct: 7   IVKKRFLGFLIWQSVHSTIIFILFTTTLSQNGIVSLPSLLTCLSFLTFHLSLLLFSASLS 66

Query: 68  FASSPPQPKRPVPPLRLAFSLL------SSWSPDFRRRAVVSFTLMLFVAVAAASGFLSV 121
           F SSP    RP  P  LA  LL       S    F RRA V   L  F+  AA +G +++
Sbjct: 67  FISSPYY-DRPSSPYDLALGLLRFLFSGQSQPHGFLRRARVFLGLFGFLLEAALAGTVAL 125

Query: 122 ASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPS 181
            S+C  E   GV +   VG RGF  GL+Y  +YV+K+RWVLEFPIIQRP FFSFKM LPS
Sbjct: 126 VSLCKSESCGGVAV---VGLRGFGFGLVYGIYYVFKRRWVLEFPIIQRPLFFSFKMGLPS 182

Query: 182 AIKKALKLSGAAYLFSALPVVFLADQLKS----------EITFYIGTFAVFLCWELDHHL 231
           AI +A+KLS AAY+FS + ++FL DQ  S          +I FY+G F+V LCWEL HHL
Sbjct: 183 AIGQAVKLSAAAYIFSGVLILFLQDQFGSHIKMGNFILEQIIFYVGIFSVCLCWELSHHL 242

Query: 232 HQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVDTW 291
           HQV+HTKR++FAPPKGSAAAETNPSEPLLAALEESTP SL +YLAYLDLCMVC+NNVD+W
Sbjct: 243 HQVMHTKRYIFAPPKGSAAAETNPSEPLLAALEESTPKSLPRYLAYLDLCMVCDNNVDSW 302

Query: 292 RRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDKDI--SNQLLSPTDMRVDS 349
           RRAAFFEET ETY++V+ V L+PL+ LA+   EG+E+ SVDK    S+QL  PT    DS
Sbjct: 303 RRAAFFEETGETYKKVVAVCLRPLEHLASNFAEGLESSSVDKTYQQSSQLQLPTVSERDS 362

Query: 350 KYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMG 409
           ++SE  +N QLC+WC+   ASLT  SHKEDRFGVAQLSGSN  VISTLLSCLLAVE F+G
Sbjct: 363 RFSEPFSNIQLCAWCSWAVASLTARSHKEDRFGVAQLSGSNAAVISTLLSCLLAVETFLG 422

Query: 410 KKTNLQAPHHLMGPAGIKWAQLNTGRRD--TGMV-KKRGGLLHSKAFAMADVLRTSIYCI 466
           KKT+LQ+P+ LMGPAGIKWA + T R D  T +V KKRG  LHS+A+A+ADVLRTSIYCI
Sbjct: 423 KKTSLQSPNALMGPAGIKWATVTTARSDAATSVVGKKRGFPLHSQAYAIADVLRTSIYCI 482

Query: 467 ISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQAC 514
           +S FH+EM++ AKAG+LEKDW++ GKPL+GTRELLLQKL LFLDF+AC
Sbjct: 483 VSVFHEEMLTGAKAGLLEKDWIIGGKPLYGTRELLLQKLHLFLDFRAC 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555508|ref|XP_003546073.1| PREDICTED: uncharacterized protein LOC100800150 [Glycine max]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 305/526 (57%), Positives = 368/526 (69%), Gaps = 47/526 (8%)

Query: 1   MSSSPVEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQL 60
           MS S    E V+KNR L +LIWQSI S+ IF+   L   SP    L+FLL    F  S L
Sbjct: 2   MSGSTRRVELVLKNRFLSYLIWQSIHSSLIFISL-LSFSSPHYPFLSFLL----FLPSHL 56

Query: 61  AFSSALSFASSP-PQPKRPVPPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFL 119
            FS+ LSF +SP P+P+             +         A  +   +  VA AA     
Sbjct: 57  LFSTTLSFIASPHPRPR------------FTLSLLFAFSAAFSASLSLSSVAPAA----- 99

Query: 120 SVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSL 179
                    G  GV    R+GFRGF+ G L+   YV+K+RWVL FPIIQRPPFFSFKM +
Sbjct: 100 --------HGLPGVS---RLGFRGFLVGSLFGSHYVFKRRWVLHFPIIQRPPFFSFKMGV 148

Query: 180 PSAIKKALKLSGAAYLFSALPVVFLADQLK----------SEITFYIGTFAVFLCWELDH 229
           PS+ ++ALKLS  A +FS + +  L    K           +IT    TF +F  WEL H
Sbjct: 149 PSSARRALKLSIVASVFSGILLELLPHPFKYSVATGRFFTEQITSLAATFTIFFSWELTH 208

Query: 230 HLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVD 289
           HLH VLHTKR +FAPPKGSAAAETNPSE LL+ALEES+P+SLL+YLAYLDLCMVCENNVD
Sbjct: 209 HLHWVLHTKRSIFAPPKGSAAAETNPSEHLLSALEESSPTSLLRYLAYLDLCMVCENNVD 268

Query: 290 TWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDK--DISNQLLSPTDMRV 347
           TWRRA FFEET ETY+RVI V LKPL+ LATKLGEG+    VDK   +SNQLLSPTD R 
Sbjct: 269 TWRRAGFFEETGETYKRVIAVCLKPLEHLATKLGEGL-GNPVDKATQLSNQLLSPTDARP 327

Query: 348 DSKYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAF 407
           D K+ EEL+NFQL +WC+RTA SLT  S K+D+FGVAQLSGSN  V+STLLSCLLAVE+F
Sbjct: 328 DLKHIEELHNFQLYAWCSRTAVSLTACSRKDDKFGVAQLSGSNAAVVSTLLSCLLAVESF 387

Query: 408 MGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCII 467
           MGKKTNLQ+P+ L+GPAGIKWA +N+GR D    K+R G ++SKA+A+ADVL+TSIY I+
Sbjct: 388 MGKKTNLQSPNQLLGPAGIKWATVNSGRVDVAAGKRRSGPVNSKAYAIADVLKTSIYQIV 447

Query: 468 SAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQA 513
           SAFHDEM++ AKA +LEKDW+ +GKPLFGTRE+L+QKLRLFLDF+A
Sbjct: 448 SAFHDEMLAGAKASLLEKDWVTNGKPLFGTREMLIQKLRLFLDFRA 493

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842069|ref|XP_002888916.1| hypothetical protein ARALYDRAFT_476456 [Arabidopsis lyrata subsp. lyrata] gi|297334757|gb|EFH65175.1| hypothetical protein ARALYDRAFT_476456 [Arabidopsis lyrata subsp. lyrata]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 298/524 (56%), Positives = 370/524 (70%), Gaps = 16/524 (3%)

Query: 1   MSSSPVEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQL 60
           M S PV PETVV +R   FLIWQSIPS+AIF  F L + S   SI++F LT   FH SQL
Sbjct: 1   MPSPPV-PETVVSHRFAAFLIWQSIPSSAIFFFFNLFLFS-TTSIISFFLTFLVFHCSQL 58

Query: 61  AFSSALSFASSPPQPKRPVPPLRLAFSLLSSWS-PDFRRRAVVSFTLMLFVAVAAASGFL 119
            FS +L+  S+P  P  P+ PL+ A  LL   S P+FRRRA VS  ++LFV   + +GF 
Sbjct: 59  LFSVSLALLSTP-TPDSPLSPLQFALGLLRHLSDPEFRRRARVSLRIVLFVCATSLAGFC 117

Query: 120 SVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSL 179
           S A  C     D      R+GFRGFV GLLYA  +V KQRWVLEFPIIQRPPFFSFK+ L
Sbjct: 118 SAAVFCLSS--DSFGPIGRIGFRGFVTGLLYAVLFVIKQRWVLEFPIIQRPPFFSFKIGL 175

Query: 180 PSAIKKALKLSGAAYLFSALPVVFLADQ----------LKSEITFYIGTFAVFLCWELDH 229
           PSA+ +ALKLSG  Y+ S + ++FL D           L  ++  Y G+F + L WE+ H
Sbjct: 176 PSALTQALKLSGVLYVLSTIMLLFLLDWSGGLVSVSRFLGEQVLSYAGSFCLILSWEVTH 235

Query: 230 HLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVD 289
           H+H+VLHTKRF FAPPKGSAAAETNPSEPLLAALE S P SL Q LAYLDL MV +NNVD
Sbjct: 236 HIHKVLHTKRFSFAPPKGSAAAETNPSEPLLAALEGSAPGSLEQSLAYLDLYMVSQNNVD 295

Query: 290 TWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDKDISNQLLSPTDMRVDS 349
           TWRRAAFFEE++ETY+RVI + L+PL++LA+KL  G++    +K     L  PT+  +D 
Sbjct: 296 TWRRAAFFEESTETYKRVITLCLRPLEELASKLSSGLDHTFTEKGYQTPLQPPTESFIDP 355

Query: 350 KYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMG 409
           K+ E L +FQL +WCA+T ASLT  SHKEDR GVAQLSG N DV+STLLS LLA+E FMG
Sbjct: 356 KFGESLKSFQLYAWCAQTTASLTSISHKEDRLGVAQLSGGNADVVSTLLSLLLAIETFMG 415

Query: 410 KKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISA 469
           KKTNLQ+P  LMGPA IKWA  +  R+D   +K+  G ++S A+A  DVL+ SIY I+S 
Sbjct: 416 KKTNLQSPQQLMGPASIKWATSSMVRKDVKPIKRSIGGMYSYAYAATDVLKISIYQILST 475

Query: 470 FHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQA 513
           F +EM++S +AG+L +DW+ S KP FGT ++LLQKL+LFL+FQA
Sbjct: 476 FREEMLNSDRAGLLGRDWIGSKKPPFGTNDMLLQKLKLFLEFQA 519

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53749487|gb|AAU90340.1| hypothetical protein SDM1_56t00017 [Solanum demissum]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 313/593 (52%), Positives = 379/593 (63%), Gaps = 91/593 (15%)

Query: 11  VVKNRHLGFLIWQSIPSTAIFLLFKLLVLS-----PRCSILTFLLTLSTFHVSQLAFSSA 65
           VVK+R LGFLIWQ++ STA+F L K L+LS     P       +     FH S L FS++
Sbjct: 20  VVKHRFLGFLIWQALQSTAVFFLSKTLLLSLFTRTPFKPSFLSIFAFIVFHFSLLIFSTS 79

Query: 66  LSFASSPPQPKRPVPPL-------RLAFSLLSS----WSPDFRRRAVVSFTLMLFVAVAA 114
           L F  S P+P+R   P        RL    +S+     SPDFR RA  S + +LFVAV+A
Sbjct: 80  L-FIISSPRPQRAASPFELLLGTARLILVPISNSQPLLSPDFRLRARASISFVLFVAVSA 138

Query: 115 ASGFLSVASVCW-LEGFDGVE----LFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQ- 168
            S  LSV ++C     FD ++    +  ++GF G   GLL+   YVY +RWVL+FPIIQ 
Sbjct: 139 VSASLSVITLCLSCNAFDQLKQRRLVIGKLGFWGLQIGLLHGVHYVYNKRWVLQFPIIQG 198

Query: 169 ------------------------------RPPFF-----------------------SF 175
                                          P F+                       SF
Sbjct: 199 YSNLINWELGKNLREREEKSVRRTQASDEETPDFYMLSHWNFDWVYWEQPLYLYEVGVSF 258

Query: 176 KMSLPSAIKKALKLSGAAYLFSA-----LPVVF-----LADQLKSEITFYIGTFAVFLCW 225
           KM LP A+ KALKLS A Y+ SA     LP  F     + + +  +I FYIG+F V LCW
Sbjct: 259 KMGLPLAVGKALKLSAAGYVLSAILAFVLPYEFKGQLPVGNFINEQILFYIGSFVVILCW 318

Query: 226 ELDHHLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCE 285
           EL HHLHQVLHTKR +FAPPKGSAAAETNPSEPLLAALEESTP SLLQYLAYLDLCMVCE
Sbjct: 319 ELCHHLHQVLHTKRSVFAPPKGSAAAETNPSEPLLAALEESTPKSLLQYLAYLDLCMVCE 378

Query: 286 NNVDTWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDK--DISNQLLSPT 343
            NVD WRRAAFFEE+ ETY+RVI+V   P++Q    + E +E+  VD    +S+QL SP 
Sbjct: 379 GNVDPWRRAAFFEESGETYKRVISVCSIPVEQFTRNVSEVLESSPVDNSLQLSHQLRSPN 438

Query: 344 DMRVDSKYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLA 403
           +   DSK  E  ++FQL +WCAR  ASLTVHSHKEDRFGVAQLSGSN  VISTLLS LLA
Sbjct: 439 EQLADSKVYESFDDFQLLAWCARIVASLTVHSHKEDRFGVAQLSGSNAAVISTLLSSLLA 498

Query: 404 VEAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDT--GMV-KKRGGLLHSKAFAMADVLR 460
           VE  MGKKTNLQ+ + LM PAGIKWA LN GRRD+  GM  +++G   ++KA++MAD+L+
Sbjct: 499 VETLMGKKTNLQSSNTLMDPAGIKWATLNPGRRDSAAGMAGRRKGSPFYAKAYSMADILK 558

Query: 461 TSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQA 513
           TSIY I+SAF+DEM  SAKAG+LEKDW++S KPL+GTRELL QKLRLFLDFQA
Sbjct: 559 TSIYGIVSAFYDEMSHSAKAGLLEKDWIISSKPLYGTRELLSQKLRLFLDFQA 611

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410306|ref|NP_565060.1| uncharacterized protein [Arabidopsis thaliana] gi|21593434|gb|AAM65401.1| unknown [Arabidopsis thaliana] gi|332197312|gb|AEE35433.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 296/524 (56%), Positives = 369/524 (70%), Gaps = 16/524 (3%)

Query: 1   MSSSPVEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQL 60
           M S PV PETVV +R   FLIWQSIPS+AIF  F + + S   SI++FL T   FH SQL
Sbjct: 1   MPSPPV-PETVVSHRFAAFLIWQSIPSSAIFFFFNIFLFS-TTSIISFLFTFLVFHSSQL 58

Query: 61  AFSSALSFASSPPQPKRPVPPLRLAFSLLSSWS-PDFRRRAVVSFTLMLFVAVAAASGFL 119
            FS +L+  SSP  P  P+ PL+ A  L    S P+FRRRA VS  ++LFV   + +GF 
Sbjct: 59  LFSVSLALLSSP-TPDSPLSPLQFAVGLHRHLSDPEFRRRARVSSRIVLFVCATSLAGFC 117

Query: 120 SVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSL 179
           S A  C     D      R+GFRG V GLLYA  +V KQRWVLEFPIIQRPPFFSFK+ L
Sbjct: 118 SSAVFCLSS--DSFGPIGRIGFRGLVTGLLYAVLFVTKQRWVLEFPIIQRPPFFSFKIGL 175

Query: 180 PSAIKKALKLSGAAYLFSALPVVFLADQ----------LKSEITFYIGTFAVFLCWELDH 229
           PSA+ +ALKLSG  Y+ S + ++FL D           L  ++  Y G+F + L WE+ H
Sbjct: 176 PSALTQALKLSGVLYVLSTIMLLFLLDWSGGLVSVSKFLGEQVLSYAGSFCLILSWEVTH 235

Query: 230 HLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVD 289
           H+H+VLHTKRF FAPPKGSAAAETNPSEPLLAALE S P SL Q LAYLDL MV +NNVD
Sbjct: 236 HIHKVLHTKRFSFAPPKGSAAAETNPSEPLLAALEGSAPGSLEQSLAYLDLYMVSQNNVD 295

Query: 290 TWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDKDISNQLLSPTDMRVDS 349
           TWRRAAFFEE++ETY+RVI + L+PL++LA+KL  G++    +K     L  PT+  +D 
Sbjct: 296 TWRRAAFFEESTETYKRVITLCLRPLEELASKLASGLDHTFTEKGYQTPLQPPTESFIDP 355

Query: 350 KYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMG 409
           K+ E L +FQL +WCA+T+ASLT  SHKEDR GVAQLSG N DV+STLLS LLA+E FMG
Sbjct: 356 KFGESLKSFQLYAWCAQTSASLTSISHKEDRLGVAQLSGGNADVVSTLLSLLLAIETFMG 415

Query: 410 KKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISA 469
           KKTNLQ+P  LMGPA IKWA  +  R+D   +K+  G +++ A+A  DVLR S+Y I+S 
Sbjct: 416 KKTNLQSPQQLMGPASIKWATSSMVRKDVKPIKRSIGAMYAYAYAATDVLRISVYQILST 475

Query: 470 FHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQA 513
           F DEM++S +AG+L +DW+ S KP FGT ++LLQKL+LFL+FQA
Sbjct: 476 FRDEMLNSDRAGLLGRDWIGSKKPPFGTNDMLLQKLKLFLEFQA 519

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20466306|gb|AAM20470.1| unknown protein [Arabidopsis thaliana] gi|24899841|gb|AAN65135.1| unknown protein [Arabidopsis thaliana]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 293/521 (56%), Positives = 367/521 (70%), Gaps = 15/521 (2%)

Query: 4   SPVEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQLAFS 63
           SP  PETVV +R   FLIWQSIPS+AIF  F + + S   SI++FL T   FH SQL FS
Sbjct: 3   SPPVPETVVSHRFAAFLIWQSIPSSAIFFFFNIFLFS-TTSIISFLFTFLVFHSSQLLFS 61

Query: 64  SALSFASSPPQPKRPVPPLRLAFSLLSSWS-PDFRRRAVVSFTLMLFVAVAAASGFLSVA 122
            +L+  SSP  P  P+ PL+ A  L    S P+FRRRA VS  ++LFV   + +GF S A
Sbjct: 62  VSLALLSSP-TPDSPLSPLQFAVGLHRHLSDPEFRRRARVSSRIVLFVCATSLAGFCSSA 120

Query: 123 SVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSA 182
             C     D      R+GFRG V GLLYA  +V KQRWVLEFPIIQRPPFFSFK+ LPSA
Sbjct: 121 VFCLSS--DSFGPIGRIGFRGLVTGLLYAVLFVTKQRWVLEFPIIQRPPFFSFKIGLPSA 178

Query: 183 IKKALKLSGAAYLFSALPVVFLADQ----------LKSEITFYIGTFAVFLCWELDHHLH 232
           + +ALKLSG  Y+ S + ++FL D           L  ++  Y G+F + L WE+ HH+H
Sbjct: 179 LTQALKLSGVLYVLSTIMLLFLLDWSGGLVSVSKFLGEQVLSYAGSFCLILSWEVTHHIH 238

Query: 233 QVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVDTWR 292
           +VLHTKRF FAPPKGSAAAETNPSEPLLAALE S P SL Q LAYLDL MV +NNVDTWR
Sbjct: 239 KVLHTKRFSFAPPKGSAAAETNPSEPLLAALEGSAPGSLEQSLAYLDLYMVSQNNVDTWR 298

Query: 293 RAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDKDISNQLLSPTDMRVDSKYS 352
           RAAFFEE++ETY+RVI + L+PL++LA+KL  G++    +K     L  PT+  +D K+ 
Sbjct: 299 RAAFFEESTETYKRVITLCLRPLEELASKLASGLDHTFTEKGYQTPLQPPTESFIDPKFG 358

Query: 353 EELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGKKT 412
           E L +FQL +WCA+T+ASLT  SHKEDR GVAQLSG N DV+STLLS LLA++ FMGKKT
Sbjct: 359 ESLKSFQLYAWCAQTSASLTSISHKEDRLGVAQLSGGNADVVSTLLSLLLAIKTFMGKKT 418

Query: 413 NLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHD 472
           NLQ+P  LMGPA IKWA  +  R+D   +K+  G +++ A+A  DVLR S+Y I+S F D
Sbjct: 419 NLQSPQQLMGPASIKWATSSMVRKDVKPIKRSIGAMYAYAYAATDVLRISVYQILSTFRD 478

Query: 473 EMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQA 513
           EM++S +AG+L +DW+ S KP FGT ++LLQKL+LFL+FQA
Sbjct: 479 EMLNSDRAGLLGRDWIGSKKPPFGTNDMLLQKLKLFLEFQA 519

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549124|ref|XP_003542947.1| PREDICTED: uncharacterized protein LOC100796588 [Glycine max]

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 306/530 (57%), Positives = 363/530 (68%), Gaps = 52/530 (9%)

Query: 1   MSSSPVEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLSTFHVSQL 60
           MS S    E V+KNR L +LIWQSI S+ IF+       SP    L+FLL L     S L
Sbjct: 2   MSGSTRRVELVLKNRFLSYLIWQSIHSSLIFISLLSFFTSPHYPFLSFLLFLP----SHL 57

Query: 61  AFSSALSFASSP-PQPKRPVPPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFL 119
            FS+ LSF +SP P+P+                           FTL L  A  +A    
Sbjct: 58  LFSATLSFIASPHPRPR---------------------------FTLSLLFATVSAFSAA 90

Query: 120 SVASVCWL--EGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKM 177
              S          GV    R+GFRGF+ G L+   YV+K+RWVL FPIIQRPPFFSFKM
Sbjct: 91  LSLSAAAPAAHTLPGVS---RLGFRGFLVGSLFGAHYVFKRRWVLHFPIIQRPPFFSFKM 147

Query: 178 SLPSAIKKALKLSGAAYLFSALPVVFLADQLK-----------SEITFYIGTFAVFLCWE 226
            +PSA ++ALKLS  A +FS + +  L                 +IT +  TFA+F  WE
Sbjct: 148 GVPSAARRALKLSVVASIFSGILLELLPHPFNYSVAATGRFFTEQITSFAATFAIFFSWE 207

Query: 227 LDHHLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCEN 286
           L HHLH VLHTKRF+FAPPKGSA AETNPSE LL+ALEES P+SLL YLAYLDL MVCEN
Sbjct: 208 LTHHLHWVLHTKRFIFAPPKGSAVAETNPSEHLLSALEESNPTSLLLYLAYLDLFMVCEN 267

Query: 287 NVDTWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDK--DISNQLLSPTD 344
           NVDTWRRA FFEETSETY+RVI V LKPL+ LATKLGEG+    VDK   +SNQLLSPTD
Sbjct: 268 NVDTWRRAGFFEETSETYKRVIAVCLKPLEHLATKLGEGL-GNPVDKATQLSNQLLSPTD 326

Query: 345 MRVDSKYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAV 404
            R D K+ EEL+NFQL +WC+RTAASLT  S K+D+FGVAQLSGSN  V+STLLSCLLAV
Sbjct: 327 ARPDLKHIEELHNFQLYAWCSRTAASLTACSRKDDKFGVAQLSGSNAAVVSTLLSCLLAV 386

Query: 405 EAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIY 464
           E FMGKKTNLQ+P+ L+GPAGIKWA +N+GR D     KR G ++SKA+A+ADVL+ SIY
Sbjct: 387 ENFMGKKTNLQSPNQLLGPAGIKWATVNSGRVDVA-AGKRSGPVNSKAYAIADVLKISIY 445

Query: 465 CIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQAC 514
            I+SAFHDEM++ AKA +LEKDW+ +GKPLFGTRE+L+QKLRLFLDF+A 
Sbjct: 446 QIVSAFHDEMLAGAKASLLEKDWVTNGKPLFGTREMLIQKLRLFLDFRAT 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
TAIR|locus:2197274	519	AT1G73240 "AT1G73240" [Arabido	0.988	0.978	0.520	3.9e-131

TAIR|locus:2197274 AT1G73240 "AT1G73240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 273/524 (52%), Positives = 339/524 (64%)

Query:     1 MSSSPVEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSIXXXXXXXXXXHVXXX 60
             M S PV PETVV +R   FLIWQSIPS+AIF  F + + S   SI          H    
Sbjct:     1 MPSPPV-PETVVSHRFAAFLIWQSIPSSAIFFFFNIFLFSTT-SIISFLFTFLVFH-SSQ 57

Query:    61 XXXXXXXXXXXXXXXXXXXXXLRLAFSLLSSWS-PDFRRRAVVSFTLMLFVAVAAASGFL 119
                                  L+ A  L    S P+FRRRA VS  ++LFV   + +GF 
Sbjct:    58 LLFSVSLALLSSPTPDSPLSPLQFAVGLHRHLSDPEFRRRARVSSRIVLFVCATSLAGFC 117

Query:   120 SVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSL 179
             S A  C L   D      R+GFRG V GLLYA  +V KQRWVLEFPIIQRPPFFSFK+ L
Sbjct:   118 SSAVFC-LSS-DSFGPIGRIGFRGLVTGLLYAVLFVTKQRWVLEFPIIQRPPFFSFKIGL 175

Query:   180 PSAIKKALKLSGAAYLFSALPVVFLADQ----------LKSEITFYIGTFAVFLCWELDH 229
             PSA+ +ALKLSG  Y+ S + ++FL D           L  ++  Y G+F + L WE+ H
Sbjct:   176 PSALTQALKLSGVLYVLSTIMLLFLLDWSGGLVSVSKFLGEQVLSYAGSFCLILSWEVTH 235

Query:   230 HLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVD 289
             H+H+VLHTKRF FAPPKGSAAAETNPSEPLLAALE S P SL Q LAYLDL MV +NNVD
Sbjct:   236 HIHKVLHTKRFSFAPPKGSAAAETNPSEPLLAALEGSAPGSLEQSLAYLDLYMVSQNNVD 295

Query:   290 TWRRAAFFEETSETYRRVINVSLKPLKQLATKLGEGMEAGSVDKDISNQLLSPTDMRVDS 349
             TWRRAAFFEE++ETY+RVI + L+PL++LA+KL  G++    +K     L  PT+  +D 
Sbjct:   296 TWRRAAFFEESTETYKRVITLCLRPLEELASKLASGLDHTFTEKGYQTPLQPPTESFIDP 355

Query:   350 KYSEELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMG 409
             K+ E L +FQL +WCA+T+ASLT  SHKEDR GVAQLSG N DV+STLLS LLA+E FMG
Sbjct:   356 KFGESLKSFQLYAWCAQTSASLTSISHKEDRLGVAQLSGGNADVVSTLLSLLLAIETFMG 415

Query:   410 KKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISA 469
             KKTNLQ+P  LMGPA IKWA  +  R+D   +K+  G +++ A+A  DVLR S+Y I+S 
Sbjct:   416 KKTNLQSPQQLMGPASIKWATSSMVRKDVKPIKRSIGAMYAYAYAATDVLRISVYQILST 475

Query:   470 FHDEMISSAKAGVLEKDWLVSGKPLFGTREXXXXXXXXXXDFQA 513
             F DEM++S +AG+L +DW+ S KP FGT +          +FQA
Sbjct:   476 FRDEMLNSDRAGLLGRDWIGSKKPPFGTNDMLLQKLKLFLEFQA 519


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      514       470   0.00098  118 3  11 22  0.46    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  628 (67 KB)
  Total size of DFA:  295 KB (2152 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.68u 0.12s 40.80t   Elapsed:  00:00:02
  Total cpu time:  40.68u 0.12s 40.80t   Elapsed:  00:00:02
  Start:  Tue May 21 06:45:05 2013   End:  Tue May 21 06:45:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	514
pfam09531	557	pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup	1e-06

>gnl|CDD|220281 pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 53/274 (19%), Positives = 103/274 (37%), Gaps = 39/274 (14%)

Query: 143 GFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSG----------- 191
           G   GL Y+  ++   R  L FP+IQ+PP    K  LPS + K+L LS            
Sbjct: 144 GVFLGLYYSVQHLIFDRDRLSFPVIQQPPQKRLKERLPSLLYKSLILSLISTLLYPIVYW 203

Query: 192 ------AAYLFSALPVVFLADQ-------------LKSEITFYIGTFAVFLCWELDHHLH 232
                    L ++L  +FL                 +  +  ++ +F + L WE  + L 
Sbjct: 204 FGLRSPIWKLTNSLAKLFLDLDSSAPLPSFSGPLNFRLLLRTWLLSFLLLLTWEFVNLLF 263

Query: 233 QVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVDTWR 292
            +  T   +      S+ ++  P+  LL+ L+   P  L++  A+ +L  +  ++ D  R
Sbjct: 264 NIYLTIGPLPKGKPISSLSKD-PNGTLLSGLKSKKP--LVKLTAFQELAYIATSSPD--R 318

Query: 293 RAAFFEETSE---TYRRVINVSLKPLKQLATKLGEGMEAGSVDKDISNQLLSPTDMRVDS 349
           R A F +       + ++++  L+ +K+L ++L   +    +     +      +   DS
Sbjct: 319 RKAIFSDIQRGGSNWSQILDECLELIKELTSRLVNYLSTSDLKPRPQSPSSGKIEPTSDS 378

Query: 350 KYSEELNNFQLCSWCARTAASL-TVHSHKEDRFG 382
                 ++                V S  +  F 
Sbjct: 379 DSLTAPSSALSPPTLPSAYGRERDVFSRAKSIFT 412

Ndc1 is a nucleoporin protein that is a component of the Nuclear Pore Complex, and, in fungi, also of the Spindle Pole Body. It consists of six transmembrane segments, three lumenal loops, both concentrated at the N-terminus and cytoplasmic domains largely at the C-terminus, all of which are well conserved. Length = 557

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	514
PF09531	602	Ndc1_Nup: Nucleoporin protein Ndc1-Nup; InterPro:	100.0
KOG4358	584	consensus Uncharacterized conserved protein [Funct	100.0

>PF09531 Ndc1_Nup: Nucleoporin protein Ndc1-Nup; InterPro: IPR019049 Ndc1 is a nucleoporin protein that is a component of the Nuclear Pore Complex, and, in fungi, also of the Spindle Pole Body

Probab=100.00  E-value=2.9e-52  Score=454.02  Aligned_cols=438  Identities=24%  Similarity=0.350  Sum_probs=308.7

Q ss_pred             hhhhhhhHHHHHHHhhhhhhHHHHHHHHh-hcC-CCchhHHHHHHHHHHHHHHHHHHhhhHh-------hcCCCCCCCCC
Q 010223            9 ETVVKNRHLGFLIWQSIPSTAIFLLFKLL-VLS-PRCSILTFLLTLSTFHVSQLAFSSALSF-------ASSPPQPKRPV   79 (514)
Q Consensus         9 ~~~~~~r~~~~~~~q~~~~~~~~~~~~~~-~~s-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~   79 (514)
                      ++|.++||.....|-.+.+-.+...+..+ -++ .-.+..|+++++..+-+-.+++.++.++       -.. ..++...
T Consensus         1 ~~vl~~Rf~~a~~~~~~~~~~~~~~~~ll~~~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~i~~~r~~~~~-v~~~~~~   79 (602)
T PF09531_consen    1 QKVLHRRFNHASRLSLLLSYLLSAAFLLLSNFSGSWSSWFWSWFPSGYTGIRSLLLFLSLLLIIVLRKSQLH-VEPRPYS   79 (602)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCC
Confidence            47899999998888887776664444442 122 1134566666663222222222222211       112 3455555


Q ss_pred             ChhhhhhhhhccCCcccchhhhhhhHHHHHHHHHHhhhhh-hhhhhh-cccCC----------Cch----hhHHHhhhhH
Q 010223           80 PPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFL-SVASVC-WLEGF----------DGV----ELFWRVGFRG  143 (514)
Q Consensus        80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~-~~~~~----------~~~----~~~~~~~f~G  143 (514)
                      +.++...+.+            .+.+++.+.+.-+++|.+ +.++.. .+++.          .+-    +--.=+-+.|
T Consensus        80 s~~~~l~~~l------------~~~~~l~~~~~y~~s~~l~~~~y~~~~~~~~~~~~i~~~~~~~~~~LNe~~lyl~~~~  147 (602)
T PF09531_consen   80 SRFAQLLHSL------------FSQSFLQTLLFYAVSGWLFAWVYIWSLSESYRLLWIKSKEYYERPCLNERPLYLWFSG  147 (602)
T ss_pred             CHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHHcCcccccceEeccccCCCceechHHHHHHHHH
Confidence            6655443333            123333333333444442 222222 22221          000    1123455689


Q ss_pred             HHHHHHHHHHHHhccceEEeeccccCCcchhhhhhchHHHHHHHHHHHHHHHhhhhhhhhhhc------------cc---
Q 010223          144 FVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLAD------------QL---  208 (514)
Q Consensus       144 ~~lGl~~s~~y~~~~~~~L~FPiIQq~kf~~~K~~Lp~~l~~Sl~~Sl~~~~~s~vl~~~l~~------------~~---  208 (514)
                      +++|++|++.|+++++++++||+++|+++.++|+.+|.++.+|++.|++.++.+.++|++..+            .+   
T Consensus       148 ~~l~~~ys~~~~~~d~~~l~f~~~~~~~~~~l~~~l~~~~~~s~~~s~~~~~~~~~~Y~~~~r~~~~~~~~~l~~~~~~~  227 (602)
T PF09531_consen  148 LFLGLVYSVQHLYFDRDRLSFPIIQQPPFQRLKSSLPSILIKSLILSLYSTLVYPIIYFFGLRSPIWWLSLFLARLFLGL  227 (602)
T ss_pred             HHHHHHHHHHHHHcCCCEeCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999999999988876766643222            11   


Q ss_pred             -ch----------hH-H---HHHHHHHHHHHHHHHHHHHHHHHhceeecCCCCCCCccCCCCChhHHHHhhccCCchHHH
Q 010223          209 -KS----------EI-T---FYIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQ  273 (514)
Q Consensus       209 -rs----------~~-l---l~~~~~Ll~~~W~lt~~Lf~I~~TEr~~F~~P~~s~a~e~dPse~Ll~aL~~~~~~~ivQ  273 (514)
                       ++          .. +   +++.+++++++|+++|++|++|+||. +|+.++|.++.++||++||++||++++  |++|
T Consensus       228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~we~~n~~f~v~~t~~-~l~~~kpis~~s~dp~~tLl~gL~~~~--p~~q  304 (602)
T PF09531_consen  228 PRSSTLPSFSPPLSFSLLLRLWLLGFLLVLLWELVNHLFDVYLTEP-PLKKGKPISSFSKDPNGTLLSGLKSKK--PLVQ  304 (602)
T ss_pred             ccccCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCCCCCCCCCCchHHHHHHHcCCC--cHHH
Confidence             11          11 1   25778999999999999999999999 999888999999999999999999544  8999


Q ss_pred             HHHHHHHHHHhhcCCChhHHhhhhccC----cccHHHHHHHHhhHHHHHHHHHhccccCCCCCc-------cc------c
Q 010223          274 YLAYLDLCMVCENNVDTWRRAAFFEET----SETYRRVINVSLKPLKQLATKLGEGMEAGSVDK-------DI------S  336 (514)
Q Consensus       274 ~LA~~DL~~laq~~~~~~RR~~iFses----G~nW~~I~~~CL~~L~~lT~~L~~~~e~~s~~~-------~l------s  336 (514)
                      ++|||||+.+|+++++  ||++||+|+    |+||++|+++|+++|++++++++++++.+...+       +.      .
T Consensus       305 ~~Af~eL~~iA~~~~~--rR~~iF~~~~~~~p~~W~~I~~eCl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (602)
T PF09531_consen  305 LLAFQELAYIAQSSPS--RRKAIFSDSDRGGPSNWSQILDECLSVIKELTQRLENYLEPIDPKPPPPPPPSPKEEPTSSS  382 (602)
T ss_pred             HHHHHHHHHHHhCCCc--hHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCCc
Confidence            9999999999998853  899999887    379999999999999999999998887532111       00      0


Q ss_pred             c---------c-----------cCCCC------------------------cc----cc------------cc--h----
Q 010223          337 N---------Q-----------LLSPT------------------------DM----RV------------DS--K----  350 (514)
Q Consensus       337 ~---------q-----------~~sP~------------------------~~----~~------------~s--K----  350 (514)
                      .         .           ..+|.                        ..    +.            ++  +    
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (602)
T PF09531_consen  383 PPLKKLPFLSRISSPPSPDSIFAPSPPPRSSRDFLWQYNSSVGSSGSSPPTTPQASSKAKSSKPSPILTPIQSFLSLVQV  462 (602)
T ss_pred             cccccccccccccCCCccccccCCCCcccccccccccccccccCCCCCCCCccccccccccccchHHHHHHHHhhhhhhH
Confidence            0         0           00000                        00    00            00  0    


Q ss_pred             ----hH---------------------Hhh-hhhhhHHHHHHHHhHHHHhhhcccccccccccCChHHHHHHHHHHHHHH
Q 010223          351 ----YS---------------------EEL-NNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAV  404 (514)
Q Consensus       351 ----~~---------------------~~~-~~~QlviW~~eaLS~L~vaSl~EDrfGVVQ~t~dlPaII~tLLsll~Av  404 (514)
                          ..                     ..+ .|.|+++|++|+|++|+++|++||+|||||+  |+|+||++|++++.++
T Consensus       463 ~~~~~~~~~l~s~~g~~f~~s~~r~~~~~vl~~~~~~~~ai~aLs~L~~~Sl~ED~yG~Vq~--dl~~il~~l~~~~~~l  540 (602)
T PF09531_consen  463 FKNLYIKQFLKSPFGIPFRFSERRDAESRVLPNPQLYIWAIEALSNLLVASLTEDKYGVVQR--DLPEILRTLTRLIRAL  540 (602)
T ss_pred             HHHHHHHHHhhccccceeEeehhhhhhHHhccchHHHHHHHHHHHHHHHHHHhhCCCCcchh--hHHHHHHHHHHHHHHH
Confidence                00                     014 6899999999999999999999999999999  5999999999999999


Q ss_pred             HHHhhhccCCCCCCccCCccccccccccCCcccccchhhcCcchhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhccccc
Q 010223          405 EAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLE  484 (514)
Q Consensus       405 E~~~~~~t~~~~p~~~~~P~~i~w~~~~~gr~~~~~~kk~~~~v~~~~~al~daLktaLYrIv~tF~d~L~~~~~~~~~~  484 (514)
                      |+|.+..           |...+|++..++.+           .....+.++|++|+|+|||+.+|+++|++        
T Consensus       541 ~~~~~~~-----------~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~l~~I~~~F~~~L~d--------  590 (602)
T PF09531_consen  541 DKYVRWP-----------PASVHWTDVQSDDR-----------ECPEVSILRDALKSALYRIVTKFGPYLND--------  590 (602)
T ss_pred             HHHhccc-----------cccccccccccccc-----------cccHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence            9998763           33457766411111           11345699999999999999999999999        


Q ss_pred             hhhhhcCCCCCCChHHHHHHHH
Q 010223          485 KDWLVSGKPLFGTRELLLQKLR  506 (514)
Q Consensus       485 ~~~~~~~kp~~g~~~~~~qkL~  506 (514)
                                .+.++++.+++|
T Consensus       591 ----------l~L~~~~~kl~q  602 (602)
T PF09531_consen  591 ----------LRLSPDVIKLLQ  602 (602)
T ss_pred             ----------cCCCHHHHHHhC
Confidence                      458999998876

It consists of six transmembrane segments, three luminal loops, both concentrated at the N terminus and cytoplasmic domains largely at the C terminus, all of which are well conserved.

>KOG4358 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.9e-49  Score=412.44  Aligned_cols=443  Identities=20%  Similarity=0.245  Sum_probs=308.7

Q ss_pred             CCchhhhhhhHHHHHHHhhhhhhHHHHHHHHhhcCCC---c----hhHH------------HHHHHHHHHHHHHHHHhhh
Q 010223            6 VEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPR---C----SILT------------FLLTLSTFHVSQLAFSSAL   66 (514)
Q Consensus         6 ~~~~~~~~~r~~~~~~~q~~~~~~~~~~~~~~~~s~~---~----~~~~------------~~~~~~~~~~~~~l~~~~~   66 (514)
                      +..+|+.|+=+++=-.=-+.+|.++.++-+|  .+|+   -    |.-|            -+|.++..-++-.+|++..
T Consensus         4 ~~s~n~~k~~l~~r~~~s~~~sv~~~p~~tt--vf~~f~~~~l~hp~qwv~~~~~~i~s~y~~f~~~~l~~s~I~~~V~~   81 (584)
T KOG4358|consen    4 GRSRDILWRVLGWRIVASIVWSVLFLPICTT--VFIIFSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIISIFN   81 (584)
T ss_pred             cccccHHHHHhhHHHHHHhhHHHHhhhhhhe--eeeeeecccccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3445666555544444444455555555555  3433   1    3222            2333344444555555544


Q ss_pred             HhhcCCCCCCCCCChhhhhhhhhccCCcccchhhhhhhHHHHHHHHHHhhhhhhhhhhh-----cccCCCchh----hHH
Q 010223           67 SFASSPPQPKRPVPPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVC-----WLEGFDGVE----LFW  137 (514)
Q Consensus        67 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~----~~~  137 (514)
                      ...-- --++++++-+++-.+..    |    |+..+  ++.=.++.++..-++.+.+|     +-..|-|=.    -.-
T Consensus        82 ~~~~l-~~~~~~~sr~~~l~~~i----P----~~~~~--~f~h~~~g~~maw~~~~~~~~~yq~l~~~ctgq~c~~~y~v  150 (584)
T KOG4358|consen   82 VEFYA-VVPSIPCSRLALIGKII----P----QQLMH--SFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGQTCLNEYHL  150 (584)
T ss_pred             hhhee-eccCCCchHHHHHHHHh----H----HHHHH--HHHHHHHHHHHHHHHHHhcccccceeeeeccchhHHHHHHH
Confidence            44211 23455555566555444    2    23332  22223444455555566665     111122210    122


Q ss_pred             HhhhhHHHHHHHHHHHHHhccceEEeeccccCCcchhhhhhchHHHHHHHHHHHHHHHhhhhhhhhhhcccc---h----
Q 010223          138 RVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQLK---S----  210 (514)
Q Consensus       138 ~~~f~G~~lGl~~s~~y~~~~~~~L~FPiIQq~kf~~~K~~Lp~~l~~Sl~~Sl~~~~~s~vl~~~l~~~~r---s----  210 (514)
                      -+.+.|+.+|..|.+-|+.+++.+++||||||+|+.++|+.+...++++...|+..+...++.|++++-..+   +    
T Consensus       151 y~l~~ga~~g~sy~~~~~~~~~~~~~fpiv~q~r~~~~r~~l~~~v~~s~~~slf~t~~~~a~~~~~g~i~~a~~sta~~  230 (584)
T KOG4358|consen  151 FFLLTGAFMGYSYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMN  230 (584)
T ss_pred             HHHHHHhhhchhhhhHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHhhhhccchHHHHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999887777777643221   1    


Q ss_pred             ------------------hHHH--HHHHHHHHHHHHHHHHHHHHHHhceeecCCCCCCCccCCCCCh-hHHHHhhccCCc
Q 010223          211 ------------------EITF--YIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPSE-PLLAALEESTPS  269 (514)
Q Consensus       211 ------------------~~ll--~~~~~Ll~~~W~lt~~Lf~I~~TEr~~F~~P~~s~a~e~dPse-~Ll~aL~~~~~~  269 (514)
                                        .+++  |+.|..++-.|++++.+|+|+.||.++|++|+|-++....-+. ||+++++ .|+.
T Consensus       231 ~~ide~~~~~~g~v~lnl~llFhv~L~g~~~l~~~yis~~~~~i~~~e~~~fpv~pP~a~~sheqd~~~lp~v~~-~n~~  309 (584)
T KOG4358|consen  231 LHIDEQVHRPLDTVSLNLSLLFHVWLCGVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSHEQDDECLPKVLN-SNPP  309 (584)
T ss_pred             HHHHHhcCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccCCccccchhhccccc-cCcH
Confidence                              1122  4667777889999999999999999999987666655443222 5666665 6767


Q ss_pred             hHHHHHHHHHHHHHhhcCCChhHHhhhhcc--Cc---ccHHHHHHHHhhHHH-HHHHHHhccccCCCCCc----------
Q 010223          270 SLLQYLAYLDLCMVCENNVDTWRRAAFFEE--TS---ETYRRVINVSLKPLK-QLATKLGEGMEAGSVDK----------  333 (514)
Q Consensus       270 ~ivQ~LA~~DL~~laq~~~~~~RR~~iFse--sG---~nW~~I~~~CL~~L~-~lT~~L~~~~e~~s~~~----------  333 (514)
                      ++.+++|..||.++++++. + ||+++|++  +|   +||++|+++|+++|+ .++.++.++++.+...+          
T Consensus       310 ~v~k~~AlHdl~l~~~~~~-~-rR~eVFsLsqPG~hP~nW~ais~~Cl~~L~~~~~~~l~s~~~~~~~~~~~~~~p~p~V  387 (584)
T KOG4358|consen  310 PIIKYLALHDLMLLSQYSP-S-RRQEVFSLSQPGGHPHNWTAISRECLNLLNPVEPKKLNSPEETAFQTPKSSQMPRPSV  387 (584)
T ss_pred             HHHHHHHHHHHHHHhccCc-h-hhhheeeecCCCCCCcchHHhHHHHHHhcCcccchhhcCHHHHhccCcccccCCCCCC
Confidence            7999999999999999874 3 99999954  55   399999999999999 67778877766653111          


Q ss_pred             c------cc---------cc------cCCCCcc------------------c------cc---------------chhHH
Q 010223          334 D------IS---------NQ------LLSPTDM------------------R------VD---------------SKYSE  353 (514)
Q Consensus       334 ~------ls---------~q------~~sP~~~------------------~------~~---------------sK~~~  353 (514)
                      |      ++         |+      .+||..+                  +      .+               +|+++
T Consensus       388 p~~~~~~LM~~~~~pR~~r~~~~~~t~~S~qq~~~~~~ps~~t~~~~~~~~~~~~~~~~~i~nfL~~~v~i~y~fs~~~~  467 (584)
T KOG4358|consen  388 PMADVNTLMGSPQSPRLIRRGPRLWTSASDQQMTEFSNPSPSTSISAESVIYWIQNKREQIKNFLSKRVLIMYFFSKHPE  467 (584)
T ss_pred             chhhhhHHhcCcccHHHHhhccCCCCCCChhhhhcccCCCCCcccCcceeeehhhhhHHHHHHHHhhCceEEEEeccCCc
Confidence            0      11         11      2222110                  0      00               12222


Q ss_pred             -----hhhhhhhHHHHHHHHhHHHHhhhcccccccccccCChHHHHHHHHHHHHHHHHHhhhccCCCCCCccCCcccccc
Q 010223          354 -----ELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGKKTNLQAPHHLMGPAGIKW  428 (514)
Q Consensus       354 -----~~~~~QlviW~~eaLS~L~vaSl~EDrfGVVQ~t~dlPaII~tLLsll~AvE~~~~~~t~~~~p~~~~~P~~i~w  428 (514)
                           .|.|+|+++.++|||++||++|++||||||||+  |+|+||++++.++.|+|+|-..               +  
T Consensus       468 a~~~~~~~da~m~~Ya~eAL~~lvaaS~~EDrfGVVQ~--DLpaiI~~l~KL~~aiDkys~r---------------~--  528 (584)
T KOG4358|consen  468 ASIQAVFSDAQMHIYALEALSHLVAASFTEDRFGVVQT--DLPAIINTLLKLQEAVDKYSPR---------------I--  528 (584)
T ss_pred             ccceeecccchhHHHHHHHHHHHHHHHhcCCccceecc--cHHHHHHHHHHHHHHHHhhChh---------------h--
Confidence                 277999999999999999999999999999999  6999999999999999999333               1  


Q ss_pred             ccccCCcccccchhhcCcchhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCCChHHHHHHHHhh
Q 010223          429 AQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLF  508 (514)
Q Consensus       429 ~~~~~gr~~~~~~kk~~~~v~~~~~al~daLktaLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g~~~~~~qkL~~F  508 (514)
                          .|+..++++|       +.+++++.+||++||||++||||||++-+                  .|+||..+||+|
T Consensus       529 ----~gsi~d~S~~-------t~~~~~raslk~SLyrI~ttFg~hL~~L~------------------~P~Eh~R~lq~~  579 (584)
T KOG4358|consen  529 ----SGSLVDTSYK-------TLRFAFRASLKTSLYRITTTFGEHLNALQ------------------APAEHQRRLQQF  579 (584)
T ss_pred             ----eeeeeecchH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------------CCHHHHHHHHHH
Confidence                2555554444       78999999999999999999999999965                  799999999999


Q ss_pred             hhcc
Q 010223          509 LDFQ  512 (514)
Q Consensus       509 l~~~  512 (514)
                      ++++
T Consensus       580 ~~~~  583 (584)
T KOG4358|consen  580 LEFK  583 (584)
T ss_pred             HhcC
Confidence            9986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	514
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 70/437 (16%), Positives = 124/437 (28%), Gaps = 115/437 (26%)

Query: 7   EPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPRCSILTFLLTLS----TFHVSQLA- 61
            P++++    +  +I      +    LF  L+      +  F+  +      F +S +  
Sbjct: 41  MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100

Query: 62  -----------FSSALS--FASSPPQPKRPVPPLRLAFSLLSSWSPDFRRRAVVSFTLML 108
                      +       +  +    K  V  L+    L         R+A++      
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---------RQALLELRPAK 151

Query: 109 FVAVAAASGF----LSVASVC----WLEGFDGVELFW-RVGFR---GFVCGLLYAFFYVY 156
            V +    G     +    VC         D  ++FW  +        V  +L    Y  
Sbjct: 152 NVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 157 KQRWVLEFPIIQRPPFFSFKMSLPSAIKKALK--LSGAAYLFSALPVVFLADQLKSEITF 214
              W                     +I+  L+  L    Y  + L V  L +   ++   
Sbjct: 210 DPNWTSRSDHSSNIKL------RIHSIQAELRRLLKSKPYE-NCLLV--LLNVQNAKA-- 258

Query: 215 YIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPS-EPLLAALEESTPSSLLQ 273
               F    C        ++L T RF       SAA  T+ S +     L   TP  +  
Sbjct: 259 -WNAFN-LSC--------KILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDEVKS 305

Query: 274 YLA-YLD-----------------LCMVCE---NNVDTWRRAAFFEETSETYRRVINVSL 312
            L  YLD                 L ++ E   + + TW    +     +    +I  SL
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSL 363

Query: 313 KPL-----KQLATKLGEGMEAGSV---DKDISNQLLSPTDMRV--DSKYSEE---LNNFQ 359
             L     +++  +L       SV      I   LLS     +  D   S+    +N   
Sbjct: 364 NVLEPAEYRKMFDRL-------SVFPPSAHIPTILLS----LIWFDVIKSDVMVVVNKLH 412

Query: 360 LCSWCARTAASLTVHSH 376
             S   +     T+   
Sbjct: 413 KYSLVEKQPKESTISIP 429

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 58/387 (14%), Positives = 118/387 (30%), Gaps = 99/387 (25%)

Query: 1   MSSSPVEPETVVKNRHLGFLIWQSIPSTAIFL----------LF----KLLVLSPRCSIL 46
            S+  +   ++ +      L  +   +  + L           F    K+L+ +    + 
Sbjct: 220 SSNIKLRIHSI-QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 47  TFLLTLSTFHVSQLAFSSALS-------FASS--------PPQPKRPVPPLRLAFSLLSS 91
            FL   +T H+S    S  L+                   P +     P      S+++ 
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLSIIAE 335

Query: 92  WSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWRVG-FR------GF 144
              D        +     V     +  +  +S+  LE  +  ++F R+  F         
Sbjct: 336 SIRDGLAT----WDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 145 VCGLLYAFFYVYKQRWVLE----FPIIQRPPFFSFKMSLPS-AIKKALKLSGAAYL---- 195
           +  L++          V+     + ++++ P     +S+PS  ++  +KL     L    
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKVKLENEYALHRSI 449

Query: 196 ---FSALPVVFLADQLKSEITFYIGTFAVFLCWELDHHLHQVLHTKR----------FMF 242
              ++        D +   +  Y           + HHL  + H +R          F F
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYF-------YSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 243 APPK----GSAAAETNPSEPLLAALE---------ESTPSSLLQYLAYLDLCMVCENNV- 288
              K     +A   +      L  L+         +     L+   A LD     E N+ 
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN--AILDFLPKIEENLI 560

Query: 289 -----DTWRRAAFFEETS---ETYRRV 307
                D  R A   E+ +   E +++V
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00