Citrus Sinensis ID: 010247

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR
cccccccccccccEEccccccEEEEEEcccccccccccccccccccccccEEEEEEccccccccccEEEEEEEEEcccEEEEEEEEEEEEEEEEEEccccccccccccEEEccccccccccccEEEEEEEEccccEEEEEEEccccccccHHHHHHHccccccccccHHHHHHHccccHHHcccccccccccEEEEccccccccccEEEEEEEccccEEEEEEEcccccccccccccHHHHHHccccEEcccccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEEEEEcccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccEEEEcccccccccHHHHHHHHHHHHHcHHHHHHHccccccccccccccccccHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHHHc
ccEEEEEcccccHccccccccEEEEEEEEEEEHHHHHHHcccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcEEEEEEEEcccccEccccccEEEcEEEEccccccccEEEEEEEEEccccccccccccHHHHHHHHccccccccHHHHHHHHcccccccccHHHHcccccHccccEEEEccccccccccEEEEEEcccccEEEEEEEEEEEEEEcccccccHHHHHccccEEccccccccccHHHccccccccccccEEEEEEEEEEcccccEEcEEEEHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccEEEcccEEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHcHcHHHHHccccHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHc
mmavravnscsmfrsaacpplvsfkiQCCYYHFRSlqlrrnksnlgfrlpacrserqflnrsgsqscsvHSLVDSVMQELVAIRKRLRVFAKVKvssgelledKLENQVLQKGLLLEFKKDSDRVLLAVAqrpdgkknwmvydqngascsikpqqvtfvvpgvekfdhkDISNFLQKAEDNllnrkdlthlKVYAIDVDEADELDDALSAMRLQDGRIKVYIHvadptkyiepgslsdkdamkrgtsvflptatypmfpeklamegmslrqgevCNAVTVSVVLHsdgsiaeysvdnsiikptymLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRikvanpedpepiinlyvedqadPAMRLVSEMMILCGEAIATYgsfnnlalpyrgqpqsnidvsafahlpegpvrsSAIVKIMRAAAidfrkpvrhgvlglpgyvqftsPIRRYMDLLAHYQVGLQAAAWVSVgaqigdevevkveeahprddiIYLKEVVR
mmavravnscsmfrsAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKvssgelledkleNQVLQKGLllefkkdsdRVLLAVaqrpdgkknwMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEdnllnrkdlTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYihvadptkyiepgslsdkdamKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLetrikvanpedpepiINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIdfrkpvrhgvlglPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEvevkveeahprddiiylkevvr
MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVdeadelddalSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATellhlnleeeaelKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR
******VNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFL******SCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIE*************TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLK****
*********CSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPA*****************VHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH**************LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS*********LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAA************************IIYLKEVVR
********SCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQF***********HSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR
*MAVRA*NSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSER*FLNR**SQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWV********************DDIIYL****R
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooo
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MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query514 2.2.26 [Sep-21-2011]
Q6NQJ6803 Ribonuclease II, chloropl yes no 0.540 0.346 0.822 1e-133
P73177666 Uncharacterized ribonucle N/A no 0.556 0.429 0.423 1e-57
O32231 779 Ribonuclease R OS=Bacillu yes no 0.558 0.368 0.280 5e-27
Q9PK00 692 Ribonuclease R OS=Chlamyd yes no 0.581 0.432 0.278 7e-27
O84402 694 Ribonuclease R OS=Chlamyd yes no 0.581 0.430 0.275 2e-26
Q9Z848 676 Ribonuclease R OS=Chlamyd yes no 0.579 0.440 0.275 6e-25
Q9CH00 817 Ribonuclease R 1 OS=Lacto yes no 0.558 0.351 0.299 1e-24
Q9WZI1 710 Ribonuclease R OS=Thermot yes no 0.560 0.405 0.292 7e-24
C3LW69 678 Exoribonuclease 2 OS=Vibr yes no 0.618 0.469 0.283 3e-22
Q9KLE1 678 Exoribonuclease 2 OS=Vibr yes no 0.618 0.469 0.283 3e-22
>sp|Q6NQJ6|RNR1_ARATH Ribonuclease II, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1 Back     alignment and function desciption
 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/293 (82%), Positives = 268/293 (91%)

Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
           + R DLTHLKVYAIDVDEADELDDALSA RLQDGRIK++IHVADP +Y+ PGS  D++A 
Sbjct: 397 VRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTPGSKVDREAR 456

Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
           +RGTSVFLPTATYPMFPEKLAMEGMSLRQGE CNAV+VSVVL SDG I EYSVDNSII+P
Sbjct: 457 RRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGCITEYSVDNSIIRP 516

Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
           TYMLTYESA+ELLHLNLEEEAELK+LSEAA +R QWR +QGA+DT TLETRIKV NPEDP
Sbjct: 517 TYMLTYESASELLHLNLEEEAELKLLSEAAFIRSQWRREQGAVDTTTLETRIKVVNPEDP 576

Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
           EP+INLYVE+QAD AMRLV EMMILCGE +AT+GS +N+ LPYRGQPQSNIDVSAFAHLP
Sbjct: 577 EPLINLYVENQADLAMRLVFEMMILCGEVVATFGSQHNIPLPYRGQPQSNIDVSAFAHLP 636

Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
           EGPVRSS+IVK+MRAA ++FR PVRHGVLG+PGYVQFTSPIRRYMDL AHYQ+
Sbjct: 637 EGPVRSSSIVKVMRAAEMNFRCPVRHGVLGIPGYVQFTSPIRRYMDLTAHYQI 689
3'-5' exoribonuclease that catalyzes 3' maturation of chloroplast and mitochondrion ribosomal RNAs; degrades short nucleotidic extensions to generate the mature 3'-ends. Involved in the maturation of 23S, 16S and 5S rRNAs.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: 1
>sp|P73177|RN2H_SYNY3 Uncharacterized ribonuclease sll1290 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1290 PE=3 SV=1 Back     alignment and function description
>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=3 SV=1 Back     alignment and function description
>sp|Q9PK00|RNR_CHLMU Ribonuclease R OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnr PE=3 SV=1 Back     alignment and function description
>sp|O84402|RNR_CHLTR Ribonuclease R OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rnr PE=3 SV=1 Back     alignment and function description
>sp|Q9Z848|RNR_CHLPN Ribonuclease R OS=Chlamydia pneumoniae GN=rnr PE=3 SV=1 Back     alignment and function description
>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=rnr1 PE=3 SV=1 Back     alignment and function description
>sp|Q9WZI1|RNR_THEMA Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rnr PE=3 SV=1 Back     alignment and function description
>sp|C3LW69|RNB_VIBCM Exoribonuclease 2 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rnb PE=3 SV=1 Back     alignment and function description
>sp|Q9KLE1|RNB_VIBCH Exoribonuclease 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rnb PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
224090693 792 predicted protein [Populus trichocarpa] 0.597 0.387 0.836 1e-154
449520221 809 PREDICTED: LOW QUALITY PROTEIN: ribonucl 0.552 0.351 0.819 1e-147
449448900 809 PREDICTED: ribonuclease II, chloroplasti 0.552 0.351 0.819 1e-147
297740364 720 unnamed protein product [Vitis vinifera] 0.564 0.402 0.873 1e-144
225440376 792 PREDICTED: uncharacterized ribonuclease 0.558 0.362 0.873 1e-144
356566110 783 PREDICTED: uncharacterized ribonuclease 0.601 0.394 0.768 1e-143
42567593 803 Ribonuclease II/R family protein [Arabid 0.540 0.346 0.822 1e-131
297806163 803 EMB2730 [Arabidopsis lyrata subsp. lyrat 0.554 0.354 0.8 1e-131
218189347 774 hypothetical protein OsI_04386 [Oryza sa 0.554 0.368 0.756 1e-120
357134851 783 PREDICTED: uncharacterized ribonuclease 0.533 0.349 0.745 1e-119
>gi|224090693|ref|XP_002309062.1| predicted protein [Populus trichocarpa] gi|222855038|gb|EEE92585.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/312 (83%), Positives = 287/312 (91%), Gaps = 5/312 (1%)

Query: 167 DHKDISNFLQKAEDNL---LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
           DH D    +  AED L   +NRKDLTHLKVYAIDVDEADELDDALSA RLQDGRIKV+IH
Sbjct: 369 DHPD--EIISAAEDLLSEPINRKDLTHLKVYAIDVDEADELDDALSATRLQDGRIKVWIH 426

Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
           VADP +Y++PGS  D++AM+RGTSVFLPTATYPMFPEKLAMEGMSL+QGEVCNAVTVSV+
Sbjct: 427 VADPARYVQPGSKVDREAMRRGTSVFLPTATYPMFPEKLAMEGMSLKQGEVCNAVTVSVI 486

Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQG 343
           LHSDG IAEYSVDNSIIKPTYMLTYESA+ELLH+NL+EEAELK+LSE+A+LRLQWR +QG
Sbjct: 487 LHSDGCIAEYSVDNSIIKPTYMLTYESASELLHMNLDEEAELKLLSESASLRLQWRCEQG 546

Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
           A+DTATLETRIKV NPEDPEP INLYVE+QADPAMRLVSEMM+LCGE IATYGS NN+ L
Sbjct: 547 AVDTATLETRIKVPNPEDPEPSINLYVENQADPAMRLVSEMMLLCGEVIATYGSCNNIPL 606

Query: 404 PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
           PYRGQPQSNIDVSAFAHLPEGPVRS+AIV+IMR A ID RKP+RHGVLGLPGYVQFTSPI
Sbjct: 607 PYRGQPQSNIDVSAFAHLPEGPVRSAAIVRIMRGAEIDIRKPIRHGVLGLPGYVQFTSPI 666

Query: 464 RRYMDLLAHYQV 475
           RRY+DLLAHYQV
Sbjct: 667 RRYLDLLAHYQV 678

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449520221|ref|XP_004167132.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease II, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449448900|ref|XP_004142203.1| PREDICTED: ribonuclease II, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297740364|emb|CBI30546.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440376|ref|XP_002266667.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356566110|ref|XP_003551278.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Glycine max] Back     alignment and taxonomy information
>gi|42567593|ref|NP_195845.2| Ribonuclease II/R family protein [Arabidopsis thaliana] gi|75127176|sp|Q6NQJ6.1|RNR1_ARATH RecName: Full=Ribonuclease II, chloroplastic/mitochondrial; Short=AtmtRNaseII; Short=RNase II; AltName: Full=Protein EMBRYO DEFECTIVE 2730; AltName: Full=Ribonucleotide reductase 1; Flags: Precursor gi|34222082|gb|AAQ62877.1| At5g02250 [Arabidopsis thaliana] gi|51970908|dbj|BAD44146.1| ribonuclease II-like protein [Arabidopsis thaliana] gi|332003067|gb|AED90450.1| Ribonuclease II/R family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806163|ref|XP_002870965.1| EMB2730 [Arabidopsis lyrata subsp. lyrata] gi|297316802|gb|EFH47224.1| EMB2730 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|218189347|gb|EEC71774.1| hypothetical protein OsI_04386 [Oryza sativa Indica Group] gi|222619521|gb|EEE55653.1| hypothetical protein OsJ_04037 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357134851|ref|XP_003569029.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
TAIR|locus:2180172803 EMB2730 "EMBRYO DEFECTIVE 2730 0.585 0.374 0.728 2.7e-178
TIGR_CMR|BA_5334 808 BA_5334 "ribonuclease R" [Baci 0.433 0.275 0.238 1.5e-16
ZFIN|ZDB-GENE-080213-3 950 dis3 "DIS3 mitotic control hom 0.455 0.246 0.266 3.4e-15
MGI|MGI:1919912 958 Dis3 "DIS3 mitotic control hom 0.455 0.244 0.254 3.5e-15
UNIPROTKB|E2RNY6 958 DIS3 "Uncharacterized protein" 0.447 0.240 0.258 4.6e-15
TIGR_CMR|CHY_0289 724 CHY_0289 "ribonuclease R" [Car 0.429 0.305 0.265 9.3e-15
UNIPROTKB|F1RHF7 752 DIS3 "Uncharacterized protein" 0.455 0.311 0.25 1.1e-14
UNIPROTKB|E1BXX6 963 DIS3 "Uncharacterized protein" 0.474 0.253 0.250 2.1e-14
ASPGD|ASPL0000038338 1050 AN9151 [Emericella nidulans (t 0.239 0.117 0.285 5.8e-14
UNIPROTKB|Q9KLE1 678 rnb "Exoribonuclease 2" [Vibri 0.805 0.610 0.237 7.7e-14
TAIR|locus:2180172 EMB2730 "EMBRYO DEFECTIVE 2730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1130 (402.8 bits), Expect = 2.7e-178, Sum P(3) = 2.7e-178
 Identities = 220/302 (72%), Positives = 250/302 (82%)

Query:   175 LQKAED-NLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEP 233
             L ++ D + + R DLTHLKVYAIDV          SA RLQDGRIK++IHVADP +Y+ P
Sbjct:   388 LSESSDIDAVRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTP 447

Query:   234 GSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEY 293
             GS  D++A +RGTSVFLPTATYPMFPEKLAMEGMSLRQGE CNAV+VSVVL SDG I EY
Sbjct:   448 GSKVDREARRRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGCITEY 507

Query:   294 SVDNSIIKPTYMLTYESATXXXXXXXXXXXXXKILSEAAALRLQWRLQQGAIDTATLETR 353
             SVDNSII+PTYMLTYESA+             K+LSEAA +R QWR +QGA+DT TLETR
Sbjct:   508 SVDNSIIRPTYMLTYESASELLHLNLEEEAELKLLSEAAFIRSQWRREQGAVDTTTLETR 567

Query:   354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
             IKV NPEDPEP+INLYVE+QAD AMRLV EMMILCGE +AT+GS +N+ LPYRGQPQSNI
Sbjct:   568 IKVVNPEDPEPLINLYVENQADLAMRLVFEMMILCGEVVATFGSQHNIPLPYRGQPQSNI 627

Query:   414 DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHY 473
             DVSAFAHLPEGPVRSS+IVK+MRAA ++FR PVRHGVLG+PGYVQFTSPIRRYMDL AHY
Sbjct:   628 DVSAFAHLPEGPVRSSSIVKVMRAAEMNFRCPVRHGVLGIPGYVQFTSPIRRYMDLTAHY 687

Query:   474 QV 475
             Q+
Sbjct:   688 QI 689
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0004540 "ribonuclease activity" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0000175 "3'-5'-exoribonuclease activity" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA;IMP
GO:0009658 "chloroplast organization" evidence=RCA;IMP
GO:0006399 "tRNA metabolic process" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
TIGR_CMR|BA_5334 BA_5334 "ribonuclease R" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080213-3 dis3 "DIS3 mitotic control homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1919912 Dis3 "DIS3 mitotic control homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNY6 DIS3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0289 CHY_0289 "ribonuclease R" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHF7 DIS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXX6 DIS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ASPGD|ASPL0000038338 AN9151 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KLE1 rnb "Exoribonuclease 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6NQJ6RNR1_ARATH3, ., 1, ., 1, 3, ., 10.82250.54080.3462yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
pfam00773322 pfam00773, RNB, RNB domain 4e-85
COG0557706 COG0557, VacB, Exoribonuclease R [Transcription] 5e-64
smart00955286 smart00955, RNB, This domain is the catalytic doma 8e-60
TIGR02063709 TIGR02063, RNase_R, ribonuclease R 6e-40
TIGR00358654 TIGR00358, 3_prime_RNase, VacB and RNase II family 1e-35
TIGR02062639 TIGR02062, RNase_B, exoribonuclease II 3e-24
COG4776645 COG4776, Rnb, Exoribonuclease II [Transcription] 2e-23
PRK05054644 PRK05054, PRK05054, exoribonuclease II; Provisiona 6e-21
PRK11642 813 PRK11642, PRK11642, exoribonuclease R; Provisional 1e-14
>gnl|CDD|216112 pfam00773, RNB, RNB domain Back     alignment and domain information 
 Score =  265 bits (680), Expect = 4e-85
 Identities = 104/321 (32%), Positives = 160/321 (49%), Gaps = 35/321 (10%)

Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
           R+DL  L  + ID + A ++DDALS  +L DG  ++ +H+AD + Y+ PGS  DK+A KR
Sbjct: 1   RRDLRDLPFFTIDPETAKDIDDALSVEKLPDGGYRLGVHIADVSHYVPPGSPLDKEARKR 60

Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
           GTSV+LP    PM PE+L+ +  SL  GE   A++V + +  DG + +Y +  S+I+   
Sbjct: 61  GTSVYLPEGVIPMLPEELSNDLCSLLPGEDRLALSVEITIDKDGEVLDYEIYPSVIRSKA 120

Query: 305 MLTYESATELLHLNLEE-----EAELKILSEAAALRLQWRLQQGAID-TATLETRIKVAN 358
            LTYE   ELL     E       +L++L E A    + RL++GA++     E +I +  
Sbjct: 121 RLTYEEVDELLEGKPSEREAPVADDLELLYELAKALRKKRLKRGALELEDLPEAKIDL-- 178

Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID---- 414
            ++    +++   +   PA  LV E MIL  EA+A + S N +   YR  P+ +++    
Sbjct: 179 -DEDGEPVDIIRIEDRSPAHSLVEEFMILANEAVARFLSENGIPGIYRVHPEPDLEKLQD 237

Query: 415 ---------------------VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGL 453
                                +      PE  + +  + + +  A      P  H  LGL
Sbjct: 238 LLKSALELDLDEEGLESLQKLLEELKDSPERRLLNLLLRRTLPRAEYST-TPAPHFGLGL 296

Query: 454 PGYVQFTSPIRRYMDLLAHYQ 474
             Y  FTSPIRRY DL+ H Q
Sbjct: 297 EIYTHFTSPIRRYADLVVHRQ 317

This domain is the catalytic domain of ribonuclease II. Length = 322
>gnl|CDD|223631 COG0557, VacB, Exoribonuclease R [Transcription] Back     alignment and domain information
>gnl|CDD|214935 smart00955, RNB, This domain is the catalytic domain of ribonuclease II Back     alignment and domain information
>gnl|CDD|233703 TIGR02063, RNase_R, ribonuclease R Back     alignment and domain information
>gnl|CDD|232937 TIGR00358, 3_prime_RNase, VacB and RNase II family 3'-5' exoribonucleases Back     alignment and domain information
>gnl|CDD|131117 TIGR02062, RNase_B, exoribonuclease II Back     alignment and domain information
>gnl|CDD|227117 COG4776, Rnb, Exoribonuclease II [Transcription] Back     alignment and domain information
>gnl|CDD|179920 PRK05054, PRK05054, exoribonuclease II; Provisional Back     alignment and domain information
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 514
TIGR00358654 3_prime_RNase VacB and RNase II family 3'-5' exori 100.0
PRK11642 813 exoribonuclease R; Provisional 100.0
TIGR02063709 RNase_R ribonuclease R. This family consists of an 100.0
TIGR02062639 RNase_B exoribonuclease II. This family consists o 100.0
COG0557706 VacB Exoribonuclease R [Transcription] 100.0
PRK05054644 exoribonuclease II; Provisional 100.0
PF00773325 RNB: RNB domain CAUTION: The Prosite pattern does 100.0
KOG2102 941 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
COG4776645 Rnb Exoribonuclease II [Transcription] 100.0
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases Back     alignment and domain information 
Probab=100.00  E-value=3.7e-81  Score=696.36  Aligned_cols=348  Identities=27%  Similarity=0.388  Sum_probs=294.8

Q ss_pred             cCCeeeeEEeeCCCCCccc--eEEccCCCccc----cCccceeeecCCCCCCCHHHHHHHHHH---hc-hhccCCCCCCC
Q 010247          121 DSDRVLLAVAQRPDGKKNW--MVYDQNGASCS----IKPQQVTFVVPGVEKFDHKDISNFLQK---AE-DNLLNRKDLTH  190 (514)
Q Consensus       121 ~~~rv~l~i~~~pd~~k~~--~~~~~~~~~~s----l~p~~~~~~~~~~~~f~~~~~~~~~~~---~~-~~~~~R~Dlr~  190 (514)
                      .|++|.+.|..+|.....+  .++...|....    +...-..|+++.  .||++.++++..-   +. ...+.|+|||+
T Consensus       122 ~g~~V~v~i~~~p~~~~~~~g~i~~~lG~~~d~~~~~~~il~~~~i~~--~f~~~v~~~a~~~~~~~~~~~~~~R~Dlr~  199 (654)
T TIGR00358       122 EGDKVVVELTEYPLRRNLFYGEITQILGNNDDPLIPWWVTLARHEIPF--EFPDGVEQQAAKLQFDVDEQAKKYREDLTD  199 (654)
T ss_pred             CCCEEEEEEccCCCCCCCceEEEEEEEcCCCCcccHHHHHHHHcCcCC--CCCHHHHHHHHhccccCChhHhhCcccccc
Confidence            4677788888888765544  23433232211    111113456665  3888777655321   21 34567999999


Q ss_pred             CeEEEEeCCCCCCccceEEEEEecCCeEEEEEEecCcccccCCCCHHHHHHHhcCceeecCCCcccCCChhhhcccCCCC
Q 010247          191 LKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR  270 (514)
Q Consensus       191 l~~fTID~~~a~DiDDAlSie~l~dG~~~vgVHIADVa~~V~~gS~LD~eA~~RgtSVYLp~~~ipMLP~~Ls~~~~SL~  270 (514)
                      +++|||||++|+|+||||||+++++|+|+|||||||||+||++||+||+||++||||||||++++||||+.||+++|||+
T Consensus       200 ~~~~TID~~~a~D~DDAisie~~~~g~~~l~VHIADVs~~V~~~s~LD~eA~~R~tSvYlp~~~ipMLP~~Ls~~~cSL~  279 (654)
T TIGR00358       200 LAFVTIDGADAKDLDDAVYVKKLPDGGWKLYVAIADVSYYVAENSPLDKEAKHRGFSVYLPGFVIPMLPEELSNGLCSLN  279 (654)
T ss_pred             CcEEEECCCCCCcccceEEEEEeCCCcEEEEEEEechhheeCCCCHHHHHHHHhCcCccCCCCeecCCCHHHhcCccccC
Confidence            99999999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeEEEEEEEECCCCCeeeEEEEEeEEecccccCHHHHHHHHhcCcc-------chHHHHHHHHHHHHHHHHHHhCC
Q 010247          271 QGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLE-------EEAELKILSEAAALRLQWRLQQG  343 (514)
Q Consensus       271 pg~~r~AlSv~~~ld~~G~I~~~~i~~siIrs~~~LtY~ev~~il~~~~~-------~~~~L~~L~~la~~l~~~R~~~G  343 (514)
                      ||++|+||||.+++|++|+|.+++|++|+|+|.++|||++|+++|+++..       ..++|..|+++|++|+++|.++|
T Consensus       280 p~~~R~a~s~~~~id~~G~i~~~~~~~svI~s~~rltY~~v~~~l~~~~~~~~~~~~~~~~L~~l~~la~~lr~~R~~~G  359 (654)
T TIGR00358       280 PNEDRLVLVCEMTISAQGRITDNEFYPATIESKARLTYDKVNDWLENDDELQPEYETLVEQLKALHQLSQALGEWRHKRG  359 (654)
T ss_pred             CCCcceEEEEEEEECCCCCEeEEEEEEEEEEECcEEcHHHHHHHHcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999987531       24579999999999999999999


Q ss_pred             CccCCCcceEEEecCCCCCCCcEEEEEecCCChHHHHHHHHHHHHHHHHHHHhhhCCCCceeecCCCCCCChh-hhc---
Q 010247          344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFA---  419 (514)
Q Consensus       344 al~~~~pe~~~~l~~~~d~~~~i~i~~~~~~~~a~~LVeE~MIlAN~~vA~~l~~~~ip~~yR~q~~P~~~~~-~l~---  419 (514)
                      +++|+.||.+|.+++   ++.++.+.... .++|+.|||||||+||++||+|+.++++|++||+|+.|+.++. +|.   
T Consensus       360 ai~~~~~e~~~~~d~---~g~~~~i~~~~-~~~a~~lIeE~MilAN~~vA~~~~~~~~p~iyR~h~~p~~~~~~~l~~~~  435 (654)
T TIGR00358       360 LIDFEHPETKFIVDE---EGRVIDIVAEV-RRIAEKIIEEAMIVANICAARFLHNHKVPGIYRVHPGPSKKKLQSLLEFL  435 (654)
T ss_pred             CcccCCCceeEEECC---CCCeeEEEecc-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHH
Confidence            999999999999987   24467888877 8999999999999999999999999999999999999987654 221   


Q ss_pred             -----cCCCC------c-----------------chHHHHHHhcccCccccCCCCcccccCCCCccccccchhhhHHHHH
Q 010247          420 -----HLPEG------P-----------------VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLA  471 (514)
Q Consensus       420 -----~l~~g------~-----------------v~~~~l~r~m~~A~ys~~~~~~H~gLgl~~YthfTSPIRRYaDLvv  471 (514)
                           .++.+      +                 +....++|+|++|.|++ .|.+|||||++.|||||||||||+||+|
T Consensus       436 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~llr~m~~A~y~~-~~~~HfgL~~~~YthfTSPIRRY~DLiv  514 (654)
T TIGR00358       436 AELGLTLPGGNAENVTTLDGACWLREVKDRPEYEILVTRLLRSLSQAEYSP-EPLGHFGLGLEHYAHFTSPIRRYPDLTN  514 (654)
T ss_pred             HHcCCCccCCCcCCCChHHHHHHHHHhhCCCHHHHHHHHHHHhhcccccCC-CCCCccccccccccccCCccccchHHHH
Confidence                 11111      0                 11346789999999999 9999999999999999999999999999


Q ss_pred             HHHh
Q 010247          472 HYQV  475 (514)
Q Consensus       472 HrQL  475 (514)
                      ||||
T Consensus       515 Hr~L  518 (654)
T TIGR00358       515 HRLI  518 (654)
T ss_pred             HHHH
Confidence            9999

This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
>PRK11642 exoribonuclease R; Provisional Back     alignment and domain information
>TIGR02063 RNase_R ribonuclease R Back     alignment and domain information
>TIGR02062 RNase_B exoribonuclease II Back     alignment and domain information
>COG0557 VacB Exoribonuclease R [Transcription] Back     alignment and domain information
>PRK05054 exoribonuclease II; Provisional Back     alignment and domain information
>PF00773 RNB: RNB domain CAUTION: The Prosite pattern does not correspond to this Pfam Back     alignment and domain information
>KOG2102 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis3 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG4776 Rnb Exoribonuclease II [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
4ifd_J 1003 Crystal Structure Of An 11-subunit Eukaryotic Exoso 2e-14
2wp8_J 977 Yeast Rrp44 Nuclease Length = 977 2e-14
2r7d_A469 Crystal Structure Of Ribonuclease Ii Family Protein 5e-14
2vnu_D 760 Crystal Structure Of Sc Rrp44 Length = 760 3e-12
2ix1_A 664 Rnase Ii D209n Mutant Length = 664 4e-10
2ix0_A 663 Rnase Ii Length = 663 4e-10
2id0_A 644 Escherichia Coli Rnase Ii Length = 644 3e-09
>pdb|4IFD|J Chain J, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 1003 Back     alignment and structure 
Iteration: 1

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 141/346 (40%), Gaps = 65/346 (18%)
Query: 182 LLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
           L  RKDL    + +ID            A +L +G  +V +H+AD T +++PG+  D + 
Sbjct: 530 LTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEG 589
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
             RGTSV+L      M P  L  +  SL+      A +V   L    +I   +   S+I+
Sbjct: 590 AARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIR 649
Query: 302 PTYMLTYESATXXXXXXXXXXXXXKILSEAAALRL-----QWRLQQGAIDTATLETRI-- 354
                +YE A                +   A L+L     Q RL+ GA++ A+ E ++  
Sbjct: 650 SREAFSYEQAQLRIDDKTQNDELT--MGMRALLKLSVKLKQKRLEAGALNLASPEVKVHM 707
Query: 355 --KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--TYGSFNNLALPYR--GQ 408
             + ++P + E I  L   +       LV E M+L   ++A   Y +F   A+  R    
Sbjct: 708 DSETSDPNEVE-IKKLLATNS------LVEEFMLLANISVARKIYDAFPQTAMLRRHAAP 760
Query: 409 PQSNIDV------------------SAFAHL------PEGPVRSSAIVKIMRAAAI---- 440
           P +N ++                   A A        PE P  ++ +V+IM    +    
Sbjct: 761 PSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNT-LVRIMSTRCMMAAQ 819
Query: 441 ----------DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG 476
                     DF    RH  L +  Y  FTSPIRRY D++AH Q+ 
Sbjct: 820 YFYSGAYSYPDF----RHYGLAVDIYTHFTSPIRRYCDVVAHRQLA 861
>pdb|2WP8|J Chain J, Yeast Rrp44 Nuclease Length = 977 Back     alignment and structure
>pdb|2R7D|A Chain A, Crystal Structure Of Ribonuclease Ii Family Protein From Deinococcus Radiodurans, Triclinic Crystal Form. Northeast Structural Genomics Target Drr63 Length = 469 Back     alignment and structure
>pdb|2VNU|D Chain D, Crystal Structure Of Sc Rrp44 Length = 760 Back     alignment and structure
>pdb|2IX1|A Chain A, Rnase Ii D209n Mutant Length = 664 Back     alignment and structure
>pdb|2IX0|A Chain A, Rnase Ii Length = 663 Back     alignment and structure
>pdb|2ID0|A Chain A, Escherichia Coli Rnase Ii Length = 644 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
2r7d_A469 Ribonuclease II family protein; structural genomic 2e-90
2wp8_J 977 Exosome complex exonuclease DIS3; nucleus, hydrola 5e-47
2vnu_D 760 Exosome complex exonuclease RRP44; hydrolase-RNA c 7e-46
2id0_A644 Exoribonuclease 2; RNAse, exonuclease, hydrolyase, 1e-44
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Length = 469 Back     alignment and structure
 Score =  283 bits (726), Expect = 2e-90
 Identities = 83/297 (27%), Positives = 124/297 (41%), Gaps = 17/297 (5%)

Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
            D    R DLTHL  +AID +   + DDA+    L  G  ++++HVAD    + P S  D
Sbjct: 75  FDPAEERLDLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLD 134

Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
            +A  RG +++LP  T  M P++L      L   EV  A+++ + L  DG+     V  +
Sbjct: 135 LEARARGATLYLPDRTIGMLPDELV-AKAGLGLHEVSPALSICLDLDPDGNAEAVDVLLT 193

Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
            +K    L Y+ A   L      E     L+  A    + R  +GA+     E R+K   
Sbjct: 194 RVK-VQRLAYQEAQARLE---AGEEPFVTLARLARASRRLREGEGALSIDLPEVRVKAD- 248

Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
            E    +              +V E M L G   A +   N + LP+  Q     +V   
Sbjct: 249 -ETGASV----FPLPKPEMRTVVQECMTLAGWGTAIFADDNEIPLPFATQDYPTREV--- 300

Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
               +      A  K +         P  H  +GL  Y Q TSP+RRY+DL+ H Q+
Sbjct: 301 --AGDTLPAMWARRKTLARTRFQ-PSPGPHHGMGLDLYAQATSPMRRYLDLVVHQQL 354
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 977 Back     alignment and structure
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Length = 760 Back     alignment and structure
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Length = 644 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
2r7d_A469 Ribonuclease II family protein; structural genomic 100.0
2id0_A644 Exoribonuclease 2; RNAse, exonuclease, hydrolyase, 100.0
2vnu_D 760 Exosome complex exonuclease RRP44; hydrolase-RNA c 100.0
2wp8_J 977 Exosome complex exonuclease DIS3; nucleus, hydrola 100.0
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A Back     alignment and structure
Probab=100.00  E-value=2.4e-83  Score=688.08  Aligned_cols=314  Identities=27%  Similarity=0.372  Sum_probs=294.2

Q ss_pred             cCCCCCCCCeEEEEeCCCCCCccceEEEEEecCCeEEEEEEecCcccccCCCCHHHHHHHhcCceeecCCCcccCCChhh
Q 010247          183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKL  262 (514)
Q Consensus       183 ~~R~Dlr~l~~fTID~~~a~DiDDAlSie~l~dG~~~vgVHIADVa~~V~~gS~LD~eA~~RgtSVYLp~~~ipMLP~~L  262 (514)
                      ++|+|||++++|||||++|+|+|||||+++++||+|+|||||||||+||+|||+||+||++||||||||++++||||+.|
T Consensus        79 ~~R~Dlr~l~~~TID~~~a~D~DDAvsve~~~~g~~~l~VHIADVs~~V~~gs~LD~eA~~RgtSvYlp~~~ipMLP~~L  158 (469)
T 2r7d_A           79 EERLDLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDEL  158 (469)
T ss_dssp             SCCEECTTSCEEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHH
T ss_pred             cCceecccCCEEEEcCCCCCCccceEEEEEeCCCCEEEEEEeccHhheeCCCCHHHHHHHHhCceEecCCceEcCCChHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccCCCCCCCeeeEEEEEEEECCCCCeeeEEEEEeEEecccccCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHhC
Q 010247          263 AMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQ  342 (514)
Q Consensus       263 s~~~~SL~pg~~r~AlSv~~~ld~~G~I~~~~i~~siIrs~~~LtY~ev~~il~~~~~~~~~L~~L~~la~~l~~~R~~~  342 (514)
                       +++|||+||++|+||||.+++|++|+|++++|++|+|+|+ +|||++|+++|+++   +++|..|+++|+.|+++|.++
T Consensus       159 -~~~cSL~pg~dr~als~~~~id~~G~i~~~~~~~svI~s~-rltY~~v~~~l~~~---~~~L~~L~~la~~lr~~R~~~  233 (469)
T 2r7d_A          159 -VAKAGLGLHEVSPALSICLDLDPDGNAEAVDVLLTRVKVQ-RLAYQEAQARLEAG---EEPFVTLARLARASRRLREGE  233 (469)
T ss_dssp             -HHHHSTTSSSSEEEEEEEEEECTTSCEEEEEEEEEEECEE-EEEHHHHHHHHHTT---CTTHHHHHHHHHHHHHHHHHT
T ss_pred             -hcccCCCCCCceEEEEEEEEEcCCCCEeeeEEEEEEEEec-cccHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHhC
Confidence             8999999999999999999999999999999999999999 99999999999975   478999999999999999999


Q ss_pred             CCccCCCcceEEEecCCCCCCCcEEEEEecCCChHHHHHHHHHHHHHHHHHHHhhhCCCCceeecCCCCCCChhhhccCC
Q 010247          343 GAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP  422 (514)
Q Consensus       343 Gal~~~~pe~~~~l~~~~d~~~~i~i~~~~~~~~a~~LVeE~MIlAN~~vA~~l~~~~ip~~yR~q~~P~~~~~~l~~l~  422 (514)
                      |+++|+.||.+|.+++   +  .+.+.+.+ ++++++|||||||+||++||+|+.++++|++||+|+.|+.++.     +
T Consensus       234 Gai~~~~pe~~i~~d~---~--~~~i~~~~-~~~a~~lIeE~MilAN~~vA~~l~~~~ip~~yR~h~~p~~~~~-----~  302 (469)
T 2r7d_A          234 GALSIDLPEVRVKADE---T--GASVFPLP-KPEMRTVVQECMTLAGWGTAIFADDNEIPLPFATQDYPTREVA-----G  302 (469)
T ss_dssp             TCCCCCCCCEEEEEET---T--EEEEEECC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCSSCCC-----C
T ss_pred             CCcccCCCceEEEECC---C--cceEEecC-CCcHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeCCCCCcccC-----c
Confidence            9999999999999986   2  58888887 9999999999999999999999999999999999999986653     7


Q ss_pred             CCcchHHHHHHhcccCccccCCCCcccccCCCCccccccchhhhHHHHHHHHh---------------------------
Q 010247          423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV---------------------------  475 (514)
Q Consensus       423 ~g~v~~~~l~r~m~~A~ys~~~~~~H~gLgl~~YthfTSPIRRYaDLvvHrQL---------------------------  475 (514)
                      ++.+...+++|+|++|.|++ .|.+|||||++.|||||||||||+||+|||||                           
T Consensus       303 ~~~~~~~~l~r~m~~a~y~~-~~~~HfgL~~~~YthfTSPIRRY~DLivHr~L~a~l~~~~~~~~~~l~~~~~~~~~~er  381 (469)
T 2r7d_A          303 DTLPAMWARRKTLARTRFQP-SPGPHHGMGLDLYAQATSPMRRYLDLVVHQQLRAFLAGRDPLSSKVMAAHIAESQMNAD  381 (469)
T ss_dssp             CSHHHHHHHHHHCCCEEEES-SCCCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhcccccccC-CCCCchhhCccceeeECCcccccHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            77788888999999999999 99999999999999999999999999999999                           


Q ss_pred             ----------------------ccc---------------------cccccccccCCCcEEEEEEeeecCCCCeEEEEEe
Q 010247          476 ----------------------GLQ---------------------AAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV  512 (514)
Q Consensus       476 ----------------------g~~---------------------~~~~~~~~~~~gd~~~v~~~~~dp~~~~~~~~~~  512 (514)
                                            |..                     ...+.....++||.|.|+|.++|+.+..|+|+.+
T Consensus       382 ~a~~aer~~~~~~~~~~l~~~~g~~f~g~vv~l~~~~glV~v~~l~~d~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~~  461 (469)
T 2r7d_A          382 ATRQAERLSRRHHTLRFIAAQPERVWDAVVVDRRGAQATLLIPDLAFDVQVNTPAAPGTALQVQFADIDLPQMRVRARSV  461 (469)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEETTEEEEEEGGGTEEEEEECCCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEEeCcEEEEEECCCCeEEecCCcCCCCCEEEEEEEEEccCCCEEEEEEE
Confidence                                  111                     0123345679999999999999999999999987


Q ss_pred             c
Q 010247          513 V  513 (514)
Q Consensus       513 ~  513 (514)
                      .
T Consensus       462 ~  462 (469)
T 2r7d_A          462 L  462 (469)
T ss_dssp             C
T ss_pred             h
Confidence            5
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A Back     alignment and structure
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 Back     alignment and structure
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 514
d2ix0a4385 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Esch 4e-47
d2vnud4416 b.40.4.16 (D:495-910) Exosome complex exonuclease 5e-45
d2r7da2401 b.40.4.16 (A:3-403) Ribonuclease II family protein 1e-38
>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Length = 385 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Exoribonuclease 2, RNB
species: Escherichia coli [TaxId: 562]

 Score =  166 bits (420), Expect = 4e-47
 Identities = 79/337 (23%), Positives = 129/337 (38%), Gaps = 42/337 (12%)

Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
            +  D  L R+DLT L    ID    +++DDAL A  L D ++++ + +ADPT +I  GS
Sbjct: 8   TEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGS 67

Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
             DK A  R  + +LP    PM P +L+ +  SLR  EV   +   + L +DG+I +   
Sbjct: 68  KLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIE 127

Query: 296 D-NSIIKPTYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDT 347
              + I+    L Y+  ++ L    + +        ++++L++    R +WR     +  
Sbjct: 128 FFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEWRHNHALVFK 187

Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR- 406
              + R  +    +   I    V +    A R+V E MI      A           Y  
Sbjct: 188 DRPDYRFILGEKGEVLDI----VAEPRRIANRIVEEAMIAANICAARVLRDKLGFGIYNV 243

Query: 407 ----------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAA 438
                                               +             S I +    A
Sbjct: 244 HMGFDPANADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFA 303

Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
            I   +P  H  LGL  Y  +TSPIR+Y D++ H  +
Sbjct: 304 EI-STEPGPHFGLGLEAYATWTSPIRKYGDMINHRLL 339
>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 416 Back     information, alignment and structure
>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} Length = 401 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
d2ix0a4385 Exoribonuclease 2, RNB {Escherichia coli [TaxId: 5 100.0
d2r7da2401 Ribonuclease II family protein DR0020 {Deinococcus 100.0
d2vnud4416 Exosome complex exonuclease RRP44 {Saccharomyces c 100.0
>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: RNB domain-like
domain: Exoribonuclease 2, RNB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.7e-75  Score=601.91  Aligned_cols=294  Identities=28%  Similarity=0.366  Sum_probs=263.3

Q ss_pred             CCCCCCCCeEEEEeCCCCCCccceEEEEEecCCeEEEEEEecCcccccCCCCHHHHHHHhcCceeecCCCcccCCChhhh
Q 010247          184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLA  263 (514)
Q Consensus       184 ~R~Dlr~l~~fTID~~~a~DiDDAlSie~l~dG~~~vgVHIADVa~~V~~gS~LD~eA~~RgtSVYLp~~~ipMLP~~Ls  263 (514)
                      .|+|||++++|||||++|+|+||||||++++||+|+|||||||||+||++||+||++|++||+|+|||++++||||+.|+
T Consensus        16 ~R~Dl~~l~~~tID~~~a~d~DDAisie~~~~~~~~l~VHIADva~~v~~~s~Ld~~A~~R~~S~Ylp~~~~pMLP~~ls   95 (385)
T d2ix0a4          16 VREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELS   95 (385)
T ss_dssp             CCEECTTSCCBEEECSSCCCCCEEEEEEEEGGGEEEEEEEECCGGGTSCTTSHHHHHHHHHCBCEEETTEEECSSCHHHH
T ss_pred             CcccCCCCCEEEEcCCCCccccceEEEEEeCCCcEEEEEEECCHHHHhCCCCHHHHHHHHhCCcEECCCCCCCCCChhhh
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCeeeEEEEEEEECCCCCee-eEEEEEeEEecccccCHHHHHHHHhcCcc-------chHHHHHHHHHHHHH
Q 010247          264 MEGMSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLE-------EEAELKILSEAAALR  335 (514)
Q Consensus       264 ~~~~SL~pg~~r~AlSv~~~ld~~G~I~-~~~i~~siIrs~~~LtY~ev~~il~~~~~-------~~~~L~~L~~la~~l  335 (514)
                      ++.|||.||++|+|+|+.+++|.+|+|. ++++++++|+|.++|||++|+++|++...       ....|..|+++++.+
T Consensus        96 ~~~~SL~~~~~r~a~s~~~~l~~~g~i~~~~~~~~s~I~s~~~ltY~~v~~~l~~~~~~~~~~~~~~~~l~~L~~~~~~l  175 (385)
T d2ix0a4          96 DDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRR  175 (385)
T ss_dssp             HTTSSCCTTCEEEEEEEEEEECTTCCBCSCCEEEEEEEECCCEEEHHHHHHHHTTCSSCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccccccceeEEEEEEEEccCcceeccceEEeEEEEecCcCcHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999985 68999999999999999999999987532       236799999999999


Q ss_pred             HHHHHhCCCccCCCcceEEEecCCCCCCCcEEEEEecCCChHHHHHHHHHHHHHHHHHHHhhhCCCCceeecCCCCCCCh
Q 010247          336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV  415 (514)
Q Consensus       336 ~~~R~~~Gal~~~~pe~~~~l~~~~d~~~~i~i~~~~~~~~a~~LVeE~MIlAN~~vA~~l~~~~ip~~yR~q~~P~~~~  415 (514)
                      +++|.++|++.++.++..+.+++   ++.+..+.... ...++.||+|+||+||.++|+++.++++|++||+|+.|+..+
T Consensus       176 r~~R~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~s~~lieE~MilaN~~va~~l~~~~~~~i~R~~~~p~~~~  251 (385)
T d2ix0a4         176 GEWRHNHALVFKDRPDYRFILGE---KGEVLDIVAEP-RRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPAN  251 (385)
T ss_dssp             HHHHHHHSCCCCCCCEEEEEECT---TSCEEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEBCCSCGGG
T ss_pred             HHHHhhcCccccccchheeeccc---ccccceEEEee-ccHHHHHHHHHHHHhhHHHHHHHHHccCCCccccccccChHH
Confidence            99999999999999999999887   34467777776 899999999999999999999999999999999999998665


Q ss_pred             h-hhc------cC--CCCc--------------------chHHHHHHhcccCccccCCCCcccccCCCCccccccchhhh
Q 010247          416 S-AFA------HL--PEGP--------------------VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRY  466 (514)
Q Consensus       416 ~-~l~------~l--~~g~--------------------v~~~~l~r~m~~A~ys~~~~~~H~gLgl~~YthfTSPIRRY  466 (514)
                      . ++.      .+  +.+.                    .....++++|++|.|++ .|.+|||||++.|||||||||||
T Consensus       252 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~a~ys~-~~~~H~gLgl~~YthfTSPIRRY  330 (385)
T d2ix0a4         252 ADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTGFLDSRIRRFQSFAEIST-EPGPHFGLGLEAYATWTSPIRKY  330 (385)
T ss_dssp             HHHHHHHHHHTTCCCCTTGGGSHHHHHHHHHHHHHSSSSHHHHHTGGGCCCCEEES-SCCCBTTTTBSCCBCCSCTTTBH
T ss_pred             HHHHHHHHHHhccccCcccccchhhHHHHhhhcccccchHHHHHHHHHhhhhccCC-CCCCchhhCcccceeeCcHHhhH
Confidence            4 111      11  1111                    11234678999999999 99999999999999999999999


Q ss_pred             HHHHHHHHh-----ccccccc
Q 010247          467 MDLLAHYQV-----GLQAAAW  482 (514)
Q Consensus       467 aDLvvHrQL-----g~~~~~~  482 (514)
                      +||+|||||     |.+.+..
T Consensus       331 ~DLivhrqL~a~L~~~~~~~~  351 (385)
T d2ix0a4         331 GDMINHRLLKAVIKGETATRP  351 (385)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCCCC
Confidence            999999999     5554443
>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure