Citrus Sinensis ID: 010390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--
Protein Sequence
MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPSFDTKEAFEKTPEASLNSPSSVLNPPSSVKRRTIRDYFLVTP
Secondary Structure (PSIPRED)
ccccccccEEEEccccEEcccccccccccccEEEcccccccEEEEEcccccccEEEEEEcccccccEEEEEcccccEEEEEcccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccccEEEEEEEEcccEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEccccEEEEEEcccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccEEEEEcccccEEEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEcccccccEEEEEEEEccccccEEEEcccccEEEEcccEEEccccccccccccccEEEEEEcccccEEEcccccccEEcccccccccccccccccccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEccEcccccccccEEcccccccccccccEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEccccEEEEEcccccEEEEEccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEcccccEEEEEEcccccccccEEEEEccccccccEEEEcccccEEEEcccccccccccccccccccccccccccccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
matpksesFFLNVRSRELNgfkarkrpyfgdvvtdfTEIGAVTvehhgeetpplavsfcktsknshifavsdedgyvsLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDlcwikedtniltasgdQTIKIWDAEKKKCtgalmghtgsikslcshptnsdilvsgsrdgsfaiwdlrcksspksncaesfVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITqawphaesssaketrlhgisslsqdsngvflTASCMDHRIYLYNVlqldkgpiqhfsgcriesfyvkseicpnashilsgssdgnaYVWQvnkpqadpiklkshdgevtavnwcpneagkivtssddYTVRLWSLEnsrcssmrspssvrrrvmaipstecrklfmngepgwlakgsdrsynsddvlnqinssdpknmpiirtpeaqkkkipsfdtkeafektpeaslnspssvlnppssvkrrtirdyflvtp
Flexible Loop (DISEMBL)
matpksesfflNVRSRelngfkarkrpyfgdVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAhllsqskrvsrrkaasMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAvnwcpneagkivtssddyTVRLWSLensrcssmrspssvrrrvmaIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNqinssdpknmpiirtpeaqkkkipsFDTKEAFEktpeaslnspssvlnppssvkrrtirdyflvtp
Low Complexity Region (SEG)
MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENsrcssmrspssvrrrVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPSFDTKEAFEKTPEAslnspssvlnppssvKRRTIRDYFLVTP
Disordered region (IsUnstruct)
*********FLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL*************MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW***********************NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE***********************ECRKLFMNGEPGWL*********************************************************************************
Disordered Region (DISOPRED)
******E****NVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPSFDTKEAFEKT*****************VKRRTIRDYFLVT*
Disordered Region (DISEMBL)
********FFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS************MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT*******************SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS*************RVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPSFDT*************************KRRTIRDYFLVTP
Disordered Region (DISPRO)
*****SESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPSFDTK*AF************SVLNPPSSVKRRTIRDYFLVTP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPSFDTKEAFEKTPEASLNSPSSVLNPPSSVKRRTIRDYFLVTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	512	2.2.26 [Sep-21-2011]
Q5ZJW8	720	Denticleless protein homo	yes	no	0.648	0.461	0.366	2e-59
Q3TLR7	729	Denticleless protein homo	yes	no	0.642	0.451	0.354	3e-58
Q6P1W0	713	Denticleless protein homo	yes	no	0.673	0.483	0.339	2e-57
Q6GPU3	711	Denticleless protein homo	N/A	no	0.644	0.464	0.343	3e-57
Q4V837	710	Denticleless protein homo	N/A	no	0.720	0.519	0.315	4e-57
Q9NZJ0	730	Denticleless protein homo	yes	no	0.642	0.450	0.349	1e-56
Q5RHI5	647	Denticleless protein homo	yes	no	0.625	0.494	0.339	7e-56
Q24371	769	Protein lethal(2)denticle	yes	no	0.650	0.433	0.294	3e-42
Q10990	490	Cell division cycle prote	yes	no	0.605	0.632	0.284	1e-24
Q55AR8	355	U5 small nuclear ribonucl	yes	no	0.484	0.698	0.245	3e-14

>sp|Q5ZJW8|DTL_CHICK Denticleless protein homolog OS=Gallus gallus GN=DTL PE=2 SV=1

 Score =  230 bits (587), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/363 (36%), Positives = 192/363 (52%), Gaps = 31/363 (8%)

Query: 48  GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
           G   PP   SF       H+ AV++E+G+V L+D+           +N  K    +W AH
Sbjct: 43  GMPVPPFGCSFSAAPNFEHVLAVANEEGFVRLYDT---------EAQNTTKLISKEWQAH 93

Query: 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
            NA+FDL W+  +  I+TASGDQT K+WD    +  G   GH  S+KS+        +  
Sbjct: 94  SNAVFDLAWVPGEHRIVTASGDQTAKVWDVRAGELLGICKGHQCSLKSVAFSRFEKAVFC 153

Query: 168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS--------QSKRVSRRKAA 219
           +G RDG+  +WD RC      N  + F      + GAH +         + KR + R  A
Sbjct: 154 TGGRDGNIMVWDTRC------NKKDGFYRQVNQISGAHNVVDRQTPSKLRKKRQNLRGLA 207

Query: 220 SM-----SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES--SSAKET 272
            +     S+T VL L+DE ++ +A AV+ ++K WD R   A   Q    ++S       T
Sbjct: 208 PLVDFQQSVTVVL-LQDEHTLISAGAVDGVIKVWDLRKNYAAYRQDPVPSKSFFYPGTST 266

Query: 273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332
           R  G SSL  DS G  L A+C D  IY++N+  L   P+  FSG +  +FY+KS I P+ 
Sbjct: 267 RKLGYSSLVLDSTGANLFANCTDDSIYMFNMTSLKTFPVAVFSGHQNSTFYIKSSISPDD 326

Query: 333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
             ++SGSSD NAY+W+V++P   P  L  H  EVT++ WCP++  KI T SDD TVR+W 
Sbjct: 327 QFLVSGSSDCNAYIWKVSEPSLPPRILVGHSQEVTSIAWCPSDFTKIATCSDDNTVRIWR 386

Query: 393 LEN 395
           L++
Sbjct: 387 LQH 389

Substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex required for cell cycle control, DNA damage response and translesion DNA synthesis. The DCX(DTL) complex, also named CRL4(CDT2) complex, mediates the polyubiquitination and subsequent degradation of CDT1 and CDKN1A/p21(CIP1). CDT1 degradation in response to DNA damage is necessary to ensure proper cell cycle regulation of DNA replication. CDKN1A/p21(CIP1) degradation during S phase or following UV irradiation is essential to control replication licensing. Most substrates require their interaction with PCNA for their polyubiquitination: substrates interact with PCNA via their PIP-box, and those containing the 'K+4' motif in the PIP box, recruit the DCX(DTL) complex, leading to their degradation. In undamaged proliferating cells, the DCX(DTL) complex also promotes the 'Lys-164' monoubiquitination of PCNA, thereby being involved in PCNA-dependent translesion DNA synthesis.
Gallus gallus (taxid: 9031)

>sp|Q3TLR7|DTL_MOUSE Denticleless protein homolog OS=Mus musculus GN=Dtl PE=1 SV=2

 Score =  226 bits (577), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 186/361 (51%), Gaps = 32/361 (8%)

Query: 48  GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
           G   PP   +FC      HI AV++E+G+V L+++  +     C +E         W+AH
Sbjct: 47  GVPVPPFGCTFCTAPSMEHILAVANEEGFVRLYNTESQTSKKTCFKE---------WMAH 97

Query: 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
            NA+FDL W+  +  ++TA+GDQT K WD    +  G   GH  S+KS+        +  
Sbjct: 98  WNAVFDLAWVPGELKLVTAAGDQTAKFWDVRAGELMGTCKGHQCSLKSVAFPKFQKAVFS 157

Query: 168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA--------- 218
           +G RDG+  IWD RC      N  + F      + GAH  +  +  S+ K          
Sbjct: 158 TGGRDGNIMIWDTRC------NKKDGFYRQVNQISGAHNTADKQTPSKPKKKQNSKGLAP 211

Query: 219 ---ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS---SAKET 272
              +  S+T VL+ +DE ++ +A AV+ I+K WD R       Q  P A  S       T
Sbjct: 212 AVDSQQSVTVVLF-QDENTLVSAGAVDGIIKVWDLRKNYTAYRQE-PIASKSFLYPGTST 269

Query: 273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332
           R  G SSL  DS G  L A+C D  IY++N+  L   P+  F+G +  +FYVKS + P+ 
Sbjct: 270 RKLGYSSLVLDSTGSTLFANCTDDNIYMFNMTGLKTSPVAVFNGHQNSTFYVKSSLSPDD 329

Query: 333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
             ++SGSSD  AY+W+V+ P   P  L  H  EVT+V WCP++  KI T SDD T+++W 
Sbjct: 330 QFLISGSSDEAAYIWKVSMPWHPPTVLLGHSQEVTSVCWCPSDFTKIATCSDDNTLKIWR 389

Query: 393 L 393
           L
Sbjct: 390 L 390

Substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex required for cell cycle control, DNA damage response and translesion DNA synthesis. The DCX(DTL) complex, also named CRL4(CDT2) complex, mediates the polyubiquitination and subsequent degradation of CDT1 and CDKN1A/p21(CIP1). CDT1 degradation in response to DNA damage is necessary to ensure proper cell cycle regulation of DNA replication. CDKN1A/p21(CIP1) degradation during S phase or following UV irradiation is essential to control replication licensing. Most substrates require their interaction with PCNA for their polyubiquitination: substrates interact with PCNA via their PIP-box, and those containing the 'K+4' motif in the PIP box, recruit the DCX(DTL) complex, leading to their degradation. In undamaged proliferating cells, the DCX(DTL) complex also promotes the 'Lys-164' monoubiquitination of PCNA, thereby being involved in PCNA-dependent translesion DNA synthesis.

Mus musculus (taxid: 10090)

>sp|Q6P1W0|DTL_XENTR Denticleless protein homolog OS=Xenopus tropicalis GN=dtl PE=1 SV=1

 Score =  224 bits (570), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/392 (33%), Positives = 204/392 (52%), Gaps = 47/392 (11%)

Query: 31  DVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFA 90
           D  T + E+GA          PP   +F      SH+ AV++E+G V L+D+  +     
Sbjct: 38  DEHTSYGELGAAV--------PPFGCAFSTVPDMSHVLAVANEEGIVRLYDTECR----- 84

Query: 91  CHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHT 150
               + ++  + +++AH NA+FD+ W+  +  ++TASGDQT K+WD +     G   GH 
Sbjct: 85  ----DVQRLVVKEFMAHTNAVFDIAWVPGEHKLVTASGDQTAKLWDVKAGDLIGECKGHQ 140

Query: 151 GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH--LLS 208
            S+KS+        +  +G RDG+  +WD RC      N  + F      + GAH  L  
Sbjct: 141 CSLKSVAFSKFEKAVFSTGGRDGNIMVWDTRC------NKKDGFYRQVNQITGAHNALDK 194

Query: 209 QS-KRVSRRKA----------ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI 257
           Q+  +V +RK           +  S+T V++ +DE +I +A AV+ IVK WD R   +  
Sbjct: 195 QTPSKVKKRKPYVRGLAPSVDSQQSVTVVIF-QDEHTIISAGAVDGIVKVWDLRKNYSAY 253

Query: 258 TQ------AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPI 311
            Q       +P+  +S    TR  G S+L  D  G  L ASC D  +Y++N   L   P+
Sbjct: 254 RQDPVPAKLFPYPGNS----TRKLGYSNLVLDPTGTNLFASCTDDNVYMFNATGLKTEPV 309

Query: 312 QHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNW 371
             F G +  +FY+K+ + P+   +LSGSSD +AY+WQV+ P+  P+ L  H  EVT+V W
Sbjct: 310 SVFGGHQNSTFYIKTSVSPDGQFLLSGSSDHSAYIWQVSDPKVPPVTLTGHCQEVTSVAW 369

Query: 372 CPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403
           C ++  KI T SDD TVR+W L+ S   S +S
Sbjct: 370 CQSDFTKIATCSDDNTVRVWRLKRSSEDSAQS 401

Substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex required for cell cycle control, DNA damage response and translesion DNA synthesis. The DCX(DTL) complex, also named CRL4(CDT2) complex, mediates the polyubiquitination and subsequent degradation of cdt1 and cdkn1a/p21(cip1). CDT1 degradation in response to DNA damage is necessary to ensure proper cell cycle regulation of DNA replication. cdkn1a/p21(cip1) degradation during S phase or following UV irradiation is essential to control replication licensing. Most substrates require their interaction with PCNA for their polyubiquitination: substrates interact with PCNA via their PIP-box, and those containing the 'K+4' motif in the PIP box, recruit the DCX(DTL) complex, leading to their degradation. In undamaged proliferating cells, the DCX(DTL) complex also promotes the 'Lys-164' monoubiquitination of pcna, thereby being involved in PCNA-dependent translesion DNA synthesis.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GPU3|DTLB_XENLA Denticleless protein homolog B OS=Xenopus laevis GN=dtl-b PE=2 SV=1

 Score =  223 bits (568), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 191/367 (52%), Gaps = 37/367 (10%)

Query: 48  GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
           G   PP   +F      SH+ AV++E+G V L+D+        C   + ++  + +++AH
Sbjct: 47  GRAVPPFGCAFSTVPGMSHVLAVANEEGIVRLYDTE-------CG--DMQRLVVKEFMAH 97

Query: 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
            NA+FD+ W+  +  ++TASGDQT K+WD +  +  G   GH  S+KS+        +  
Sbjct: 98  TNAVFDIAWVPGEHKLVTASGDQTAKLWDVKAGELIGECKGHQCSLKSVAFSKFERAVFS 157

Query: 168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK---RVSRRKAA----- 219
           +G RDG+  +WD RC      N  + F      + GAH     +   +V +RK +     
Sbjct: 158 TGGRDGNIMVWDTRC------NKKDGFYRQVNQITGAHNAIDKQTPSKVKKRKPSIRGLA 211

Query: 220 ----SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ------AWPHAESSSA 269
               S    +V+  +DE ++ +A AV+ +VK WD R   +   Q       +P+  +S  
Sbjct: 212 PSVDSQQSVTVVIFQDEYTVISAGAVDGVVKIWDLRKNYSTYRQDPVPVKLFPYPGNS-- 269

Query: 270 KETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC 329
             TR  G SSL  D  G  L ASC D  +Y++N   L   P+  F G +  +FY+K+ + 
Sbjct: 270 --TRKLGYSSLVLDPTGTNLFASCTDDNVYMFNATGLKTDPVSVFRGHQNSTFYIKASVS 327

Query: 330 PNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVR 389
           P+   +LSGSSD +AY+WQV+ P A PI L  H  EVT+V WC ++  KI T SDD TVR
Sbjct: 328 PDGQFLLSGSSDHSAYIWQVSDPLAAPINLIGHCQEVTSVAWCQSDFTKIATCSDDNTVR 387

Query: 390 LWSLENS 396
           +W L  S
Sbjct: 388 IWRLNRS 394

Substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex required for cell cycle control, DNA damage response and translesion DNA synthesis. The DCX(DTL) complex, also named CRL4(CDT2) complex, mediates the polyubiquitination and subsequent degradation of cdt1 and cdkn1a/p21(cip1). CDT1 degradation in response to DNA damage is necessary to ensure proper cell cycle regulation of DNA replication. cdkn1a/p21(cip1) degradation during S phase or following UV irradiation is essential to control replication licensing. Most substrates require their interaction with PCNA for their polyubiquitination: substrates interact with PCNA via their PIP-box, and those containing the 'K+4' motif in the PIP box, recruit the DCX(DTL) complex, leading to their degradation. In undamaged proliferating cells, the DCX(DTL) complex also promotes the 'Lys-164' monoubiquitination of pcna, thereby being involved in PCNA-dependent translesion DNA synthesis.

Xenopus laevis (taxid: 8355)

>sp|Q4V837|DTLA_XENLA Denticleless protein homolog A OS=Xenopus laevis GN=dtl-a PE=2 SV=1

 Score =  223 bits (567), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 130/412 (31%), Positives = 203/412 (49%), Gaps = 43/412 (10%)

Query: 9   FFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHH------GEETPPLAVSFCKTS 62
            F +V ++   G+  +  P+   + +       V  + H      G   PP   +F    
Sbjct: 2   LFRSVMNKPRLGYGQKGAPFTYPLQSLLQCYQCVKQDEHISYGELGMPVPPFGCAFSTVP 61

Query: 63  KNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122
             SH+ AV++E+G V L+D+  +         + ++  + +++AH NA+FD+ W+  +  
Sbjct: 62  DMSHVLAVANEEGIVRLYDTECR---------DMQRLLMKEFMAHTNAVFDIAWVPGEHK 112

Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182
           ++TASGDQT K+WD    +  G   GH  S+KS+        +  +G RDG+  +WD RC
Sbjct: 113 LVTASGDQTAKLWDVMAGELIGECRGHQCSLKSVSFSKFERAVFSTGGRDGNIMMWDTRC 172

Query: 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI------------TSVLYLK 230
                    + F      + GAH     +  S+ K    SI             +V+  +
Sbjct: 173 SKK------DGFYRQVNQITGAHNAIDKQTPSKMKKRKPSIRGLAPSVDSQQSVTVVIFQ 226

Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQITQ------AWPHAESSSAKETRLHGISSLSQDS 284
           DE +I +A AV+ +VK WD R   +   Q       +P+  +S    TR  G SSL  D 
Sbjct: 227 DEYTIISAGAVDGVVKIWDLRKNYSAYRQDPVPVKHFPYPGNS----TRKLGYSSLVLDP 282

Query: 285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344
            G  L ASC D  +Y++N   L   P+  F G +  +FY+K+ + P+   +LSGSSD +A
Sbjct: 283 TGTNLFASCTDDNVYMFNATGLKTDPVSIFRGHQNSTFYIKASVSPDGQFLLSGSSDHSA 342

Query: 345 YVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396
           Y+WQV+ P A P+ L  H  EVT+V WC ++  KI T SDD TVR+W L+ S
Sbjct: 343 YIWQVSDPMAAPVTLMGHCQEVTSVAWCQSDFTKIATCSDDNTVRVWRLKRS 394

Substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex required for cell cycle control, DNA damage response and translesion DNA synthesis. The DCX(DTL) complex, also named CRL4(CDT2) complex, mediates the polyubiquitination and subsequent degradation of cdt1 and cdkn1a/p21(cip1). CDT1 degradation in response to DNA damage is necessary to ensure proper cell cycle regulation of DNA replication. cdkn1a/p21(cip1) degradation during S phase or following UV irradiation is essential to control replication licensing. Most substrates require their interaction with PCNA for their polyubiquitination: substrates interact with PCNA via their PIP-box, and those containing the 'K+4' motif in the PIP box, recruit the DCX(DTL) complex, leading to their degradation. In undamaged proliferating cells, the DCX(DTL) complex also promotes the 'Lys-164' monoubiquitination of pcna, thereby being involved in PCNA-dependent translesion DNA synthesis.

Xenopus laevis (taxid: 8355)

>sp|Q9NZJ0|DTL_HUMAN Denticleless protein homolog OS=Homo sapiens GN=DTL PE=1 SV=3

 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 126/361 (34%), Positives = 185/361 (51%), Gaps = 32/361 (8%)

Query: 48  GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
           G   PP   +F       H+ AV++E+G+V L+++  +     C +E         W+AH
Sbjct: 47  GVPVPPFGCTFSSAPNMEHVLAVANEEGFVRLYNTESQSFRKKCFKE---------WMAH 97

Query: 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
            NA+FDL W+  +  ++TA+GDQT K WD +  +  G   GH  S+KS+        +  
Sbjct: 98  WNAVFDLAWVPGELKLVTAAGDQTAKFWDVKAGELIGTCKGHQCSLKSVAFSKFEKAVFC 157

Query: 168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAAS------- 220
           +G RDG+  +WD RC      N  + F      + GAH  S  +  S+ K          
Sbjct: 158 TGGRDGNIMVWDTRC------NKKDGFYRQVNQISGAHNTSDKQTPSKPKKKQNSKGLAP 211

Query: 221 -----MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS---SAKET 272
                 S+T VL+ +DE ++ +A AV+ I+K WD R       Q  P A  S       T
Sbjct: 212 SVDFQQSVTVVLF-QDENTLVSAGAVDGIIKVWDLRKNYTAYRQE-PIASKSFLYPGSST 269

Query: 273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332
           R  G SSL  DS G  L A+C D  IY++N+  L   P+  F+G +  +FYVKS + P+ 
Sbjct: 270 RKLGYSSLILDSTGSTLFANCTDDNIYMFNMTGLKTSPVAIFNGHQNSTFYVKSSLSPDD 329

Query: 333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
             ++SGSSD  AY+W+V+ P   P  L  H  EVT+V WCP++  KI T SDD T+++W 
Sbjct: 330 QFLVSGSSDEAAYIWKVSTPWQPPTVLLGHSQEVTSVCWCPSDFTKIATCSDDNTLKIWR 389

Query: 393 L 393
           L
Sbjct: 390 L 390

Substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex required for cell cycle control, DNA damage response and translesion DNA synthesis. The DCX(DTL) complex, also named CRL4(CDT2) complex, mediates the polyubiquitination and subsequent degradation of CDT1 and CDKN1A/p21(CIP1). CDT1 degradation in response to DNA damage is necessary to ensure proper cell cycle regulation of DNA replication. CDKN1A/p21(CIP1) degradation during S phase or following UV irradiation is essential to control replication licensing. Most substrates require their interaction with PCNA for their polyubiquitination: substrates interact with PCNA via their PIP-box, and those containing the 'K+4' motif in the PIP box, recruit the DCX(DTL) complex, leading to their degradation. In undamaged proliferating cells, the DCX(DTL) complex also promotes the 'Lys-164' monoubiquitination of PCNA, thereby being involved in PCNA-dependent translesion DNA synthesis.

Homo sapiens (taxid: 9606)

>sp|Q5RHI5|DTL_DANRE Denticleless protein homolog OS=Danio rerio GN=dtl PE=2 SV=1

 Score =  218 bits (556), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 183/356 (51%), Gaps = 36/356 (10%)

Query: 52  PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAI 111
           PP   +F       +  AV++E+G+V++F++  K           + + + +W AH NA+
Sbjct: 52  PPFGCTFSSAHGQQNCLAVANEEGFVTIFNTGEK-----------QSSVLKEWQAHDNAV 100

Query: 112 FDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR 171
           FD+ W+     ++TASGDQT ++WD       G   GH  S+KS+  +     +  +G R
Sbjct: 101 FDIAWVPGTNCLVTASGDQTARLWDVITGDLLGTFKGHQCSLKSVAFYKQEKAVFSTGGR 160

Query: 172 DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS--------I 223
           DG+  IWD RC         + F      + GAH+  +      +K   M+        +
Sbjct: 161 DGNIMIWDTRCSKK------DGFYRQVKQISGAHMKPERFTPQTKKRRGMAPPVDSQQGV 214

Query: 224 TSVLYLKDEVSIATASAVNSIVKFWDTR-NLKAQ-----ITQAWPHAESSSAKETRLHGI 277
           T VL+  DE  + ++ AV+ I+K WD R N  A        QA+P+  S     TR  G 
Sbjct: 215 TVVLFC-DETKLISSGAVDGIIKMWDLRRNYTAYHQNPLPLQAYPYPGSC----TRKLGY 269

Query: 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
           S LS D  G  L ++C D  IY++N+  L   P+  FSG    SFYVKS + P+   + S
Sbjct: 270 SGLSLDYTGSRLFSNCTDDNIYMFNISGLKTTPVAVFSGHSNSSFYVKSTVSPDDQFLAS 329

Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
           GSSD N Y+W+++ P+  P+ L+ H  EVT+V WCP +  KI + SDD TVR+W L
Sbjct: 330 GSSDHNVYIWKISDPKQAPMMLQGHSQEVTSVAWCPTDFTKIASCSDDNTVRIWRL 385

Substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex required for cell cycle control, DNA damage response and translesion DNA synthesis. The DCX(DTL) complex, also named CRL4(CDT2) complex, mediates the polyubiquitination and subsequent degradation of cdt1 and cdkn1a/p21(cip1). CDT1 degradation in response to DNA damage is necessary to ensure proper cell cycle regulation of DNA replication. cdkn1a/p21(cip1) degradation during S phase or following UV irradiation is essential to control replication licensing. Most substrates require their interaction with PCNA for their polyubiquitination: substrates interact with PCNA via their PIP-box, and those containing the 'K+4' motif in the PIP box, recruit the DCX(DTL) complex, leading to their degradation. In undamaged proliferating cells, the DCX(DTL) complex also promotes the 'Lys-164' monoubiquitination of pcna, thereby being involved in PCNA-dependent translesion DNA synthesis.

Danio rerio (taxid: 7955)

>sp|Q24371|L2DTL_DROME Protein lethal(2)denticleless OS=Drosophila melanogaster GN=l(2)dtl PE=1 SV=2

 Score =  173 bits (438), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 172/356 (48%), Gaps = 23/356 (6%)

Query: 50  ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN 109
           E P  +  F       HI A+++EDG ++L D+ ++           E+  +     H N
Sbjct: 50  EPPIFSAKFANCDGYRHILAIANEDGKITLQDTTQR-------NHQPEEQSLVGPQCHFN 102

Query: 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILV 167
           A+FDL W       ++ASGD T ++W+       G  + +GHT S+KS     T+  +  
Sbjct: 103 AVFDLEWAPGQMRFVSASGDHTARLWEVAGSGIRGLNSYVGHTRSVKSAAFKRTDPAVFA 162

Query: 168 SGSRDGSFAIWDLRCK-----SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS 222
           +G RDG+  IWD+R       +S   NC    ++S         +SQ K+ +R    +  
Sbjct: 163 TGGRDGAILIWDIRANLNMDLTSRVDNC----IYSGHTGGPGTPVSQRKQRTRTPKMAGG 218

Query: 223 ITSV----LYLKDEVSIATASAVNSIVKFWDTR-NLKAQITQAWPHAESSSAKETRLHGI 277
            TS     L  +D  ++ +  A + ++K WD R N  A   +  P  +   A  +   G 
Sbjct: 219 TTSSSITGLAFQDNDTLISCGAGDGVIKVWDLRRNYTAYKKEPLPRHKLPYAGSSTFRGF 278

Query: 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
           ++L  D++G  L A+CMD+ IY YN+    + P+  + G    +FY+KS + P+  ++LS
Sbjct: 279 TNLIVDASGTRLYANCMDNTIYCYNLASYSQRPLACYKGLLNSTFYIKSCLSPDGKYLLS 338

Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
           GSSD  AY+W ++  +   + L  H  EVT V W  +    IVT SDD   ++W +
Sbjct: 339 GSSDERAYIWNLDHAEEPLVALAGHTVEVTCVAWGSSHDCPIVTCSDDARHKIWRI 394

Substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex required for cell cycle control. The DCX(DTL) complex, also named CRL4(CDT2) complex, mediates the polyubiquitination and subsequent degradation of E2f during S phase. E2f degradation is necessary to ensure proper development. Substrates require their interaction with mus209/PCNA for their polyubiquitination: substrates interact with mus209/PCNA via their PIP-box, leading to recruit the DCX(DTL) complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q10990|CDT2_SCHPO Cell division cycle protein cdt2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdt2 PE=1 SV=1

 Score =  115 bits (287), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 164/365 (44%), Gaps = 55/365 (15%)

Query: 53  PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKA----RISDWVAHQ 108
           P  + F   + N  + AV  E G + LFDSR         R+N E      RI  W+AH 
Sbjct: 130 PFCLGF---ANNESLLAVCTETGALELFDSR------FYDRQNEENQPSARRIHGWLAHN 180

Query: 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT------GALMGHTGSIK--SLCSH- 159
           NAIF + + K+D+ + T+SGDQT K++D   ++C       G    H+ S+K  + C+  
Sbjct: 181 NAIFSVNFSKDDSLLATSSGDQTSKVFDLSTQQCITRLGRRGVDGYHSHSVKQVNFCNDS 240

Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
           P N   LVS SRDGS   WD+R                   + G H      R+ +    
Sbjct: 241 PYN---LVSCSRDGSIIFWDMRTH--------------GITIDGEHFQKPVLRIRKAHEN 283

Query: 220 S---MSITSVLYLKDEVS-IATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET-RL 274
           S    SITS  +L    S + ++ + NS +K WD R +     +  P A +     + R 
Sbjct: 284 SGRDCSITSATWLPQSTSQVISSCSANSALKLWDLRTV--HTVRPLPAATTPELTTSKRD 341

Query: 275 HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG--CRIESFYVKSEICPNA 332
            G++++    +G  + A+  D  IY Y+   L+ G  + +     RI SFYVK    P+ 
Sbjct: 342 FGVTNVCTSPDGERIYAASRDSIIYEYSSRHLNSGFCKTYKDPRLRISSFYVKLACSPDG 401

Query: 333 SHILSGS-----SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYT 387
           + +  G      + G           +  +    H  +VTAV+W  +  G++ + SDD +
Sbjct: 402 ATLACGGGVQDKTSGVVVFDTTRNCSSSAMLTGGHTKDVTAVDW--SSEGQLASISDDGS 459

Query: 388 VRLWS 392
           VR+W+
Sbjct: 460 VRVWN 464

Substrate-specific adapter of a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex required for DNA replication during mitosis and meiosis. The DCX(DTL) complex, also named CRL4(CDT2) complex, mediates the polyubiquitination and subsequent degradation of cdt1 and spd1. Involved in the regulation of mitotic and pre-meiotic S-phase progression.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q55AR8|SNR40_DICDI U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum GN=snrnp40 PE=3 SV=1

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 119/293 (40%), Gaps = 45/293 (15%)

Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I +L W  +   I TA  D++I +WD+ K +    +  H+G + S C       +
Sbjct: 103 GHKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPL 162

Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           + SGS D S  I+D R K S                   HL                +TS
Sbjct: 163 VASGSDDRSARIFDTRSKGS------------------THLFQH----------KYPVTS 194

Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285
           V +  D         ++++++ WD RN +  +     H ++          I+S S   +
Sbjct: 195 VCF-SDASDQLITGGIDNVIRVWDIRNQEDPLYTLASHQDT----------ITSTSVSKD 243

Query: 286 GVFLTASCMDHRIYLYNVLQL--DKGPIQHFSGCR--IESFYVKSEICPNASHILSGSSD 341
           G +L ++ MD+   ++++         I+ F+G +   E   +KS    +   I  GSSD
Sbjct: 244 GAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEKNLIKSSWSIDGRRIGCGSSD 303

Query: 342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394
              Y+W  N  Q     L  H G V  V + PNE   I + S D T+ L  ++
Sbjct: 304 RQVYIWDTNTKQLQYC-LPGHSGTVNEVTFHPNEP-IIASCSSDKTIYLGEIK 354

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	512
224060131	503	predicted protein [Populus trichocarpa]	0.964	0.982	0.712	0.0
255560896	502	Cell division cycle protein cdt2, putati	0.972	0.992	0.712	0.0
225452354	510	PREDICTED: denticleless protein homolog	0.992	0.996	0.683	0.0
296087616	509	unnamed protein product [Vitis vinifera]	0.978	0.984	0.677	0.0
147852205	599	hypothetical protein VITISV_035386 [Viti	0.986	0.843	0.662	0.0
297815020	538	hypothetical protein ARALYDRAFT_905015 [	0.982	0.934	0.603	1e-178
18405469	535	protein denticleless [Arabidopsis thalia	0.982	0.940	0.605	1e-174
356513955	509	PREDICTED: denticleless protein homolog	0.982	0.988	0.604	1e-173
449489572	516	PREDICTED: denticleless protein homolog	0.978	0.970	0.591	1e-172
449446877	523	PREDICTED: denticleless protein homolog	0.978	0.957	0.589	1e-171

>gi|224060131|ref|XP_002300052.1| predicted protein [Populus trichocarpa] gi|222847310|gb|EEE84857.1| predicted protein [Populus trichocarpa]

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/507 (71%), Positives = 420/507 (82%), Gaps = 13/507 (2%)

Query: 5   KSESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKN 64
           +S+S F ++RSREL GF  RKR +   + +DFTE+G+VTVEH+GEETPPL+VSFCKTSK 
Sbjct: 6   RSKSLFRDMRSRELGGF--RKRRFITQMGSDFTEMGSVTVEHNGEETPPLSVSFCKTSKY 63

Query: 65  SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL 124
           SHI AVSDEDGYVS+FD+R + PS        EKARISDWVAHQNAIFD+CWIKEDTNIL
Sbjct: 64  SHILAVSDEDGYVSMFDTRTEFPS--------EKARISDWVAHQNAIFDVCWIKEDTNIL 115

Query: 125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS 184
           TASGDQTIK+WDA++KKCTG LMGHTGS+KSL  HPTNSD+L+S SRDGSFAIWDLRCK+
Sbjct: 116 TASGDQTIKVWDAQEKKCTGILMGHTGSVKSLSPHPTNSDLLISASRDGSFAIWDLRCKT 175

Query: 185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSI 244
           + K+ C+E+ V  +A+V+GAHL S++KRV R KAASMSITSVLYLKDEVSIATA A +SI
Sbjct: 176 TSKTRCSEAHVAPAAMVQGAHLSSRAKRVRRGKAASMSITSVLYLKDEVSIATAGAADSI 235

Query: 245 VKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL 304
           VKFWDTRNLK Q+TQA P+ +SS+ KE RLHGISSLSQD NGVFLTA+CMD+RIYLYNVL
Sbjct: 236 VKFWDTRNLKVQVTQASPNIKSSTEKERRLHGISSLSQDLNGVFLTATCMDNRIYLYNVL 295

Query: 305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDG 364
           QLDKGP++ FSGCRIESFYVKS I P+A+HILSGSSDGNAY+WQVNKP  DPI LK+HDG
Sbjct: 296 QLDKGPMRSFSGCRIESFYVKSTISPDAAHILSGSSDGNAYIWQVNKPDVDPITLKTHDG 355

Query: 365 EVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS-MRSPSSVRRRVMAIPSTECRKLF 423
           EVTAV+WCP+E GKI TSSDD+TVR+W++ +S CSS  RSPS++RRRVMAIP  ECR+L 
Sbjct: 356 EVTAVDWCPSEVGKIATSSDDFTVRIWNINSSYCSSTTRSPSAIRRRVMAIPREECRELL 415

Query: 424 MNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIP-SFDTKEAFEKTP 482
           MN E     K  D    SD+V NQ N   P  MP I TPEA KKK     D+KE FEKTP
Sbjct: 416 MNDERIDPTKVPDNLLPSDEVFNQNNPPIPITMPTISTPEAHKKKFSLDSDSKETFEKTP 475

Query: 483 EASLNSPSSVLNPPSSVKRRTIRDYFL 509
           EA++ SPSSVLNPPSS+K RTIRDYFL
Sbjct: 476 EAAMKSPSSVLNPPSSLK-RTIRDYFL 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560896|ref|XP_002521461.1| Cell division cycle protein cdt2, putative [Ricinus communis] gi|223539360|gb|EEF40951.1| Cell division cycle protein cdt2, putative [Ricinus communis]

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/504 (71%), Positives = 423/504 (83%), Gaps = 6/504 (1%)

Query: 7   ESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSH 66
           +SFF  +RSRELNGFK +KRPY GD  TDFTE+GA+ VEH GEETPPLA+SFC+T+KNSH
Sbjct: 2   DSFFQGIRSRELNGFKVKKRPYVGDKATDFTELGALAVEHDGEETPPLAISFCETNKNSH 61

Query: 67  IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126
           I AVSDEDGY+SLFDSR+K PS+A H+E ++ ARISDWVAHQNAIFD+CWIKEDTNILTA
Sbjct: 62  ILAVSDEDGYLSLFDSRKKFPSYASHQECSDTARISDWVAHQNAIFDICWIKEDTNILTA 121

Query: 127 SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP 186
           SGDQTIKIWDA++KKC G LMGHTGSIKS+CSHPTNSDILVSGSRDGSFA WDLRC ++ 
Sbjct: 122 SGDQTIKIWDAQEKKCIGVLMGHTGSIKSMCSHPTNSDILVSGSRDGSFATWDLRCNTTS 181

Query: 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVK 246
           KS    + +  +++VK AHL   +KRV R KAASMSITSVLYLKDEVSI TA AV+SI+K
Sbjct: 182 KSEI--TCITPTSMVKRAHLSPYAKRVRRGKAASMSITSVLYLKDEVSITTAGAVDSIIK 239

Query: 247 FWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL 306
           FWD RNLK  +TQA PH +S+  K+ RLHGISSLSQDSNGVFLTASCMD+RIYLYN LQL
Sbjct: 240 FWDARNLKTHVTQACPHPKSAD-KDRRLHGISSLSQDSNGVFLTASCMDNRIYLYNALQL 298

Query: 307 DKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEV 366
           +KGP+Q FSGCRIESFYVKS I P+A+ ILSGS+DGNAY+WQVNKP+ADPI LKSHDGEV
Sbjct: 299 EKGPVQSFSGCRIESFYVKSAISPDATQILSGSTDGNAYIWQVNKPEADPITLKSHDGEV 358

Query: 367 TAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNG 426
           TAV+WCP + GKI TSSDD+TVR+W+++++  SS RSPSS+RRR+MAIPS ECR+L MN 
Sbjct: 359 TAVDWCPYD-GKIATSSDDFTVRIWNIQSNNYSSSRSPSSIRRRIMAIPSEECRRLLMNE 417

Query: 427 EPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPSF-DTKEAFEKTPEAS 485
           EP  L K S+   NS D L Q++  +   MP + TPEA K+K  S  D+K  F+KTPEA+
Sbjct: 418 EPLSLTKTSNH-LNSSDELLQVDLPNSIRMPTLSTPEAHKRKFSSGSDSKGTFDKTPEAA 476

Query: 486 LNSPSSVLNPPSSVKRRTIRDYFL 509
           + SPSSVLNPPSS+KR+TIRDYFL
Sbjct: 477 MKSPSSVLNPPSSLKRKTIRDYFL 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452354|ref|XP_002273021.1| PREDICTED: denticleless protein homolog A-like [Vitis vinifera]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/512 (68%), Positives = 423/512 (82%), Gaps = 4/512 (0%)

Query: 1   MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCK 60
           M + K +SFF ++RSRELNGF+ RKRPY G   + F+E+GAV VEH+G +TPPLAVSFCK
Sbjct: 1   MESCKPQSFFQDIRSRELNGFRVRKRPYSGVDSSGFSEVGAVAVEHNGFDTPPLAVSFCK 60

Query: 61  TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120
           TSKN HI AVSDEDGYVSLFDSRR+ P FA ++ENAEKAR+ +WVAH NA+FD+CWIK+D
Sbjct: 61  TSKNFHILAVSDEDGYVSLFDSRRRHPYFASYQENAEKARLYEWVAHDNAVFDVCWIKDD 120

Query: 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
           T ILTASGDQ+IK+WDA++KKCTG LMGHTGS+KSLC HP+N D++VSGSRDGSFAIWDL
Sbjct: 121 TCILTASGDQSIKVWDAQEKKCTGMLMGHTGSVKSLCPHPSNPDLVVSGSRDGSFAIWDL 180

Query: 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA 240
           R  S  ++   + ++ S+AVVKGAHL  + KRV R KAASMSITSVLYLKDEVSIATA A
Sbjct: 181 RGGS--RTRRGDIWIPSTAVVKGAHLSPRMKRVKRAKAASMSITSVLYLKDEVSIATAGA 238

Query: 241 VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYL 300
           V+S++KFWDTRNLKA +TQA PH+ +S AKE RLHGISSLSQDSNGVF++ASCMD+RIYL
Sbjct: 239 VDSVIKFWDTRNLKALVTQASPHS-TSVAKERRLHGISSLSQDSNGVFISASCMDNRIYL 297

Query: 301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360
           YNVL L+KGPI  FSGCRIESFYVKS I P+A+HILSGSSDG+AY+WQVNKP ADPI LK
Sbjct: 298 YNVLNLEKGPINSFSGCRIESFYVKSTISPDAAHILSGSSDGSAYIWQVNKPLADPILLK 357

Query: 361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECR 420
           SH+GEVTAV+WC +E GKI TSSDDY+VR+W +++S  SS RSPSS+RRR MAIP+ E R
Sbjct: 358 SHEGEVTAVDWCSSELGKIATSSDDYSVRVWDMQSSCSSSSRSPSSIRRRGMAIPNMEPR 417

Query: 421 KLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIP-SFDTKEAFE 479
            +FM+ EP    K S      D+V +Q+NS +P  MP I TPE+QK++     D +E FE
Sbjct: 418 NIFMHEEPSSSTKDSRSLCPPDEVADQLNSHNPITMPKISTPESQKQQFSLELDLQETFE 477

Query: 480 KTPEASLNSPSSVLNPPSSVKRRTIRDYFLVT 511
           KTP+A+L SP+SVLNPP S+KR+TIRDYFL +
Sbjct: 478 KTPDAALKSPASVLNPPPSLKRKTIRDYFLAS 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087616|emb|CBI34872.3| unnamed protein product [Vitis vinifera]

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/518 (67%), Positives = 419/518 (80%), Gaps = 17/518 (3%)

Query: 1   MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCK 60
           M + K +SFF ++RSRELNGF+ RKRPY G   + F+E+GAV VEH+G +TPPLAVSFCK
Sbjct: 1   MESCKPQSFFQDIRSRELNGFRVRKRPYSGVDSSGFSEVGAVAVEHNGFDTPPLAVSFCK 60

Query: 61  TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120
           TSKN HI AVSDEDGYVSLFDSRR+ P FA ++ENAEKAR+ +WVAH NA+FD+CWIK+D
Sbjct: 61  TSKNFHILAVSDEDGYVSLFDSRRRHPYFASYQENAEKARLYEWVAHDNAVFDVCWIKDD 120

Query: 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
           T ILTASGDQ+IK+WDA++KKCTG LMGHTGS+KSLC HP+N D++VSGSRDGSFAIWDL
Sbjct: 121 TCILTASGDQSIKVWDAQEKKCTGMLMGHTGSVKSLCPHPSNPDLVVSGSRDGSFAIWDL 180

Query: 181 RCKSSPKSNCAESFVF------SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS 234
           R            F F      S+AVVKGAHL  + KRV R KAASMSITSVLYLKDEVS
Sbjct: 181 R---------GVKFHFLIDSSRSTAVVKGAHLSPRMKRVKRAKAASMSITSVLYLKDEVS 231

Query: 235 IATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM 294
           IATA AV+S++KFWDTRNLKA +TQA PH+ +S AKE RLHGISSLSQDSNGVF++ASCM
Sbjct: 232 IATAGAVDSVIKFWDTRNLKALVTQASPHS-TSVAKERRLHGISSLSQDSNGVFISASCM 290

Query: 295 DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354
           D+RIYLYNVL L+KGPI  FSGCRIESFYVKS I P+A+HILSGSSDG+AY+WQVNKP A
Sbjct: 291 DNRIYLYNVLNLEKGPINSFSGCRIESFYVKSTISPDAAHILSGSSDGSAYIWQVNKPLA 350

Query: 355 DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAI 414
           DPI LKSH+GEVTAV+WC +E GKI TSSDDY+VR+W +++S  SS RSPSS+RRR MAI
Sbjct: 351 DPILLKSHEGEVTAVDWCSSELGKIATSSDDYSVRVWDMQSSCSSSSRSPSSIRRRGMAI 410

Query: 415 PSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIP-SFD 473
           P+ E R +FM+ EP    K S      D+V +Q+NS +P  MP I TPE+QK++     D
Sbjct: 411 PNMEPRNIFMHEEPSSSTKDSRSLCPPDEVADQLNSHNPITMPKISTPESQKQQFSLELD 470

Query: 474 TKEAFEKTPEASLNSPSSVLNPPSSVKRRTIRDYFLVT 511
            +E FEKTP+A+L SP+SVLNPP S+KR+TIRDYFL +
Sbjct: 471 LQETFEKTPDAALKSPASVLNPPPSLKRKTIRDYFLAS 508

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852205|emb|CAN80149.1| hypothetical protein VITISV_035386 [Vitis vinifera]

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/531 (66%), Positives = 423/531 (79%), Gaps = 26/531 (4%)

Query: 1   MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCK 60
           M + K +SFF ++RSRELNGF+ RKRPY G   + F+E+GAV VEH+G +TPPLAVSFCK
Sbjct: 1   MESCKPQSFFQDIRSRELNGFRVRKRPYSGVDSSGFSEVGAVAVEHNGFDTPPLAVSFCK 60

Query: 61  TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120
           TSKN HI AVSDEDGYVSLFDSRR+ P FA ++ENAEKAR+ +WVAH NA+FD+CWIK+D
Sbjct: 61  TSKNXHILAVSDEDGYVSLFDSRRRHPXFASYQENAEKARLYEWVAHDNAVFDVCWIKDD 120

Query: 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
           T ILTASGDQ+IK+WDA++KKCTG LMGHTGS+KSLC HP   +++VSGSRDGSFAIWDL
Sbjct: 121 TCILTASGDQSIKVWDAQEKKCTGMLMGHTGSVKSLCPHP---NLVVSGSRDGSFAIWDL 177

Query: 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA 240
           R  S  ++   + ++ S+AVVKGAHL  + KRV R KAASMSITSVLYLKDEVSIATA A
Sbjct: 178 RGGS--RTRXGDIWIPSTAVVKGAHLSPRMKRVKRAKAASMSITSVLYLKDEVSIATAGA 235

Query: 241 VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYL 300
           V+S++KFWDTRNLKA +TQA PH+ +S AKE RLHGISSLSQDSNGVF++ASCMD+RIYL
Sbjct: 236 VDSVIKFWDTRNLKALVTQASPHS-TSVAKERRLHGISSLSQDSNGVFISASCMDNRIYL 294

Query: 301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360
           YNVL L+KGPI  FSGCRIESFYVKS I P+A+HILSGSSDG+AY+WQVNKP ADPI LK
Sbjct: 295 YNVLNLEKGPINSFSGCRIESFYVKSTISPDAAHILSGSSDGSAYIWQVNKPLADPILLK 354

Query: 361 SHDGEVTAVNW------------------CPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402
           SH+GEVTAV+W                  C +E GKI TSSDDYTVR+W +++S  SS R
Sbjct: 355 SHEGEVTAVDWYMILTPNGSGPLFSFTNKCSSELGKIATSSDDYTVRVWDMQSSCSSSSR 414

Query: 403 SPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP 462
           SPSS+RRRVMAIP+ E R +FM+ EP    K S      D+V +Q+NS +P  MP I TP
Sbjct: 415 SPSSIRRRVMAIPNMEPRNIFMHEEPSSXTKDSRXLCPPDEVADQLNSHNPITMPKISTP 474

Query: 463 EAQKKKIPS--FDTKEAFEKTPEASLNSPSSVLNPPSSVKRRTIRDYFLVT 511
           E+QK++  S   D +E FEKTP+A+L SP+SVLNPP S+KR+TIRDYFL T
Sbjct: 475 ESQKQQSFSLELDLQETFEKTPDAALKSPASVLNPPPSLKRKTIRDYFLAT 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815020|ref|XP_002875393.1| hypothetical protein ARALYDRAFT_905015 [Arabidopsis lyrata subsp. lyrata] gi|297321231|gb|EFH51652.1| hypothetical protein ARALYDRAFT_905015 [Arabidopsis lyrata subsp. lyrata]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 321/532 (60%), Positives = 392/532 (73%), Gaps = 29/532 (5%)

Query: 1   MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCK 60
           M + +S S F N+  RELNGF+ RKRP+F D      EI  V VEH G  TPPLAVSFCK
Sbjct: 16  MESSRSRSVFANIGLRELNGFRVRKRPFFADSELICREIAGVAVEHDGIRTPPLAVSFCK 75

Query: 61  TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120
           TS+NS +FAVSDEDG+VSLF+S +K  S A H+EN E AR  DW+AH NAIFD+ WIK D
Sbjct: 76  TSRNSQLFAVSDEDGHVSLFNSSKKFASSATHQENTENARFRDWIAHYNAIFDISWIKRD 135

Query: 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
           + +LTASGDQTIK+WD E+ KCTG L+GHTG++KS+CSHPTNSD+LVSGSRDG FA+WDL
Sbjct: 136 SCLLTASGDQTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDL 195

Query: 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA 240
           RCKSS  S+  E  + S+ +VKGAHL   SKR+ RRKAAS SITSVLYLKDE++IATA A
Sbjct: 196 RCKSS--SHKEEFCINSTGMVKGAHLSPLSKRIRRRKAASSSITSVLYLKDEITIATAGA 253

Query: 241 VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYL 300
            +S +KFWDTR LKA   QA P ++ ++ KE R HGI SLSQDS+G FLTASC D+RIYL
Sbjct: 254 PDSALKFWDTRKLKAPFAQASPQSDPTNTKEKRSHGIVSLSQDSSGTFLTASCKDNRIYL 313

Query: 301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360
           YN L+LDKGP+Q FSGCRI+SF+V++ I P+  ++LSGSSDGNAY+WQVNKPQ DPI LK
Sbjct: 314 YNTLRLDKGPVQSFSGCRIDSFFVRTMISPDGEYVLSGSSDGNAYIWQVNKPQVDPIILK 373

Query: 361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSS---VRRRVMAIPST 417
            HD EVTAV+W P+E GK+ T+SDD+TVRLW++EN+RC++  + +S   V+RRV A  +T
Sbjct: 374 GHDFEVTAVDWSPSEIGKVATASDDFTVRLWNIENNRCTNTNATASVSRVKRRVTAFSNT 433

Query: 418 ECR-KLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPSFDTKE 476
           E + +L MN E     K S  S   DD +N   S+     PIIRTPE+QKK   S  +  
Sbjct: 434 EAKERLEMNRETESPQKHS--SLLDDDYINNDQST-----PIIRTPESQKKTSSSSSSSL 486

Query: 477 AF----------------EKTPEASLNSPSSVLNPPSSVKRRTIRDYFLVTP 512
           +                 E+TPE + NSPSSVLNPPSSVKRRTIRDYFLVTP
Sbjct: 487 SSLSSLSSLSSSEEDIMCERTPETTFNSPSSVLNPPSSVKRRTIRDYFLVTP 538

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405469|ref|NP_566822.1| protein denticleless [Arabidopsis thaliana] gi|14334988|gb|AAK59671.1| unknown protein [Arabidopsis thaliana] gi|17104577|gb|AAL34177.1| unknown protein [Arabidopsis thaliana] gi|332643826|gb|AEE77347.1| protein denticleless [Arabidopsis thaliana]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 318/525 (60%), Positives = 396/525 (75%), Gaps = 22/525 (4%)

Query: 1   MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCK 60
           M + +S S F+N+  RELNGF+ RKRP+F D      EI  V VEH G  TPPLAVSFCK
Sbjct: 20  MESSRSRSVFVNIGLRELNGFRVRKRPFFADSELICREIAGVAVEHDGIWTPPLAVSFCK 79

Query: 61  TSKNSHIFAVSDEDGYVSLFDSRRKLPSFA-CHRENAEKARISDWVAHQNAIFDLCWIKE 119
           TS+NS +FAVSDEDG+VSLF+S  K  + +  H+EN EKAR  DW+AH NAIFD+ WIK 
Sbjct: 80  TSRNSQLFAVSDEDGHVSLFNSSSKKFASSATHQENTEKARFRDWIAHYNAIFDISWIKG 139

Query: 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
           D+ +LTASGDQTIK+WD E+ KCTG L+GHTG++KS+CSHPTNSD+LVSGSRDG FA+WD
Sbjct: 140 DSCLLTASGDQTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWD 199

Query: 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS 239
           LRCKSS  S+  E  + S+ +VKGAHL   SKR+ RRKAAS SITSVLY+KDE++IATA 
Sbjct: 200 LRCKSS--SHKEEFCINSTGMVKGAHLSPLSKRIRRRKAASSSITSVLYVKDEITIATAG 257

Query: 240 AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299
           A +S +KFWD R LKA   QA P ++ ++ KE R HGI SLSQDS+G +LTASC D+RIY
Sbjct: 258 APDSALKFWDIRKLKAPFAQASPQSDPTNTKEKRSHGIVSLSQDSSGTYLTASCKDNRIY 317

Query: 300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359
           LYN L+LDKGP+Q FSGCRI+SF+V++ I P+  ++LSGSSDGNAY+WQVNKPQ DPI L
Sbjct: 318 LYNTLRLDKGPVQSFSGCRIDSFFVRTMISPDGEYVLSGSSDGNAYIWQVNKPQVDPIIL 377

Query: 360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSS---VRRRVMAIPS 416
           K HD EVTAV+W P+E GK+ T+SDD+TVRLW++EN+ C++  + +S   V+RRV A+ +
Sbjct: 378 KGHDFEVTAVDWSPSEIGKVATASDDFTVRLWNIENNICTNANATASVSRVKRRVTALSN 437

Query: 417 TECR-KLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPSFDTK 475
           TE + +L MN E     K S  S +SDD  N     + ++MPIIRTPE+QKKK  S  + 
Sbjct: 438 TEAKERLEMNRETESPQKHS--SLSSDDDYN-----NDQSMPIIRTPESQKKKTSSSSSL 490

Query: 476 EAF--------EKTPEASLNSPSSVLNPPSSVKRRTIRDYFLVTP 512
            +         E+TPE + NSPSSVLNPPSSVKRRTIRDYFLVTP
Sbjct: 491 SSLSSEEDIICERTPETTFNSPSSVLNPPSSVKRRTIRDYFLVTP 535

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513955|ref|XP_003525673.1| PREDICTED: denticleless protein homolog [Glycine max]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 310/513 (60%), Positives = 386/513 (75%), Gaps = 10/513 (1%)

Query: 1   MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCK 60
           M TP S S F ++ SREL  F+  KR      V+ F E G + V+H+ E+T PL++SFCK
Sbjct: 1   METPSSHSLFAHIASREL--FRVPKRHRMDGFVSGFNETGLLAVQHNAEDTIPLSLSFCK 58

Query: 61  TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120
           TSK  HI AVSDEDGY++LFD+RR  P  A   EN+EK +I  WV+HQNA+FD CWIKED
Sbjct: 59  TSKFGHILAVSDEDGYITLFDTRRNFPVTANFEENSEKVKICHWVSHQNAVFDTCWIKED 118

Query: 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
           T ILTASGDQTIK+WD +++KC G L GHTGS+KS+CSHPTNSDI+VSGSRDGSF IWDL
Sbjct: 119 TQILTASGDQTIKLWDVQEQKCLGVLTGHTGSVKSMCSHPTNSDIIVSGSRDGSFRIWDL 178

Query: 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA 240
           RCKS+ KS   E  + S   VKGAH+ SQ++R  R KAA MSITSVL LKD+VSIATA A
Sbjct: 179 RCKSTAKSRHGEVGICSMGGVKGAHISSQARRTRRGKAAPMSITSVLCLKDQVSIATAGA 238

Query: 241 VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYL 300
           V+S++KFWDTRNLK+ +TQ  P  +  SA++  LHGISSLSQD +G+FL+ASCMD+RIYL
Sbjct: 239 VDSVLKFWDTRNLKSTVTQTSPSPQ--SAEKQTLHGISSLSQDESGLFLSASCMDNRIYL 296

Query: 301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360
           YN LQLDKGP++ FSGCRIESF+VKS I P+AS+I+SGSSDGNAYVW+V+KP  DP  LK
Sbjct: 297 YNTLQLDKGPLKSFSGCRIESFFVKSAISPDASNIVSGSSDGNAYVWKVDKPLEDPTILK 356

Query: 361 SH-DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTEC 419
           SH DGEVTAV+WC +E GK+ T SDD+TVR W+ +NS  SS++  S++RRRVMAIPS EC
Sbjct: 357 SHDDGEVTAVDWCSSEIGKLATCSDDFTVRTWN-KNSYVSSIQCASAIRRRVMAIPSIEC 415

Query: 420 RKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPS-FDTKEAF 478
           + L  NG+    +K ++ ++  DD L+ I S  P   P +   E    ++ S  D   + 
Sbjct: 416 KMLLNNGKR--YSKTNEDAFLPDDALHPITSPTPITPPKMNISEGHTNQLSSRLDLNASS 473

Query: 479 EKTPEASLNSPSSVLNPPSSVKRRTIRDYFLVT 511
           EKTPE++L SPSSVLNPPSS+K RTIRDYFL +
Sbjct: 474 EKTPESALKSPSSVLNPPSSLK-RTIRDYFLAS 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489572|ref|XP_004158352.1| PREDICTED: denticleless protein homolog [Cucumis sativus]

 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 306/517 (59%), Positives = 394/517 (76%), Gaps = 16/517 (3%)

Query: 1   MATPKSESFFLNVRSRELNGFKARKRPYFG-DVVTDFTEIGAVTVEHHGEETPPLAVSFC 59
           M T KS SFF ++ SRELNGF+ RKRP F  D+   F E+GA++VEH G++TPPLAVSFC
Sbjct: 11  MQTSKSPSFFQDLSSRELNGFRVRKRPRFSSDIALSFKEVGAMSVEHDGDQTPPLAVSFC 70

Query: 60  KTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119
           KT  NSHIFA+SDEDGYVSLF++R +   F+ H EN EK+RIS+W AH+NA+FD+CWIK+
Sbjct: 71  KTLNNSHIFALSDEDGYVSLFNTRSRFSLFSSHEENTEKSRISEWEAHRNAVFDVCWIKD 130

Query: 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
           DT ++TASGDQ++K+WD ++ +C G L GH GS+KS+ SHPTN D++VSGSRDGSFA+WD
Sbjct: 131 DTQMITASGDQSMKLWDVQEMECIGILRGHKGSVKSISSHPTNHDLIVSGSRDGSFALWD 190

Query: 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS 239
           LR  S  K    E ++ ++AVVKGAHL   +KR+ R+K+AS SITSVLYLKDE+S+ATA 
Sbjct: 191 LRTPSCSKVGSEELYLRATAVVKGAHLSPYAKRIRRQKSASKSITSVLYLKDELSVATAG 250

Query: 240 AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299
           AV+SIVKFWDTRNLK  IT   P    SS K+TRLHGISSLSQD+NG FL+ASCMD+RIY
Sbjct: 251 AVDSIVKFWDTRNLKNAITMCQPK---SSEKDTRLHGISSLSQDANGAFLSASCMDNRIY 307

Query: 300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359
           LYNVLQL+KGP++ FSGC+I+SF+VKS I P+AS++LSGS+DGNA+VWQV+KP  DPI L
Sbjct: 308 LYNVLQLEKGPVKSFSGCQIDSFFVKSAISPDASYLLSGSTDGNAHVWQVDKPHEDPITL 367

Query: 360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSV-RRRVMAIPSTE 418
             H+GEV+AV+W   E GK VTSSDD+TVR+W+ +N+ CSS + P+S  R+R+MA+PS E
Sbjct: 368 TKHNGEVSAVDWSSFEVGKFVTSSDDFTVRIWNSQNNSCSSSKRPTSCNRKRIMAMPSIE 427

Query: 419 CRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPS---FDTK 475
             K   + +  +  +      NS   ++  +         + TPE++ K+  S    D  
Sbjct: 428 HAKDSDSSDSPFFDRARAAPSNSKSYMDMEHK--------LSTPESKVKRSISDATADLI 479

Query: 476 EAFEKTPEASLNSPSSVLNPPSSVKRRTIRDYFLVTP 512
           E+FEKTPEA+  SPSSVLNPPSS+KR+TIRDYFLV P
Sbjct: 480 ESFEKTPEANSKSPSSVLNPPSSLKRKTIRDYFLVAP 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446877|ref|XP_004141197.1| PREDICTED: denticleless protein homolog [Cucumis sativus]

 Score =  609 bits (1571), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 305/517 (58%), Positives = 394/517 (76%), Gaps = 16/517 (3%)

Query: 1   MATPKSESFFLNVRSRELNGFKARKRPYFG-DVVTDFTEIGAVTVEHHGEETPPLAVSFC 59
           M T KS SFF ++ SRELNGF+ RKRP F  D+   F E+GA++VEH G++TPPLAVSFC
Sbjct: 18  MQTSKSPSFFQDLSSRELNGFRVRKRPRFSSDIALSFKEVGAMSVEHDGDQTPPLAVSFC 77

Query: 60  KTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119
           KT  NSHIFA+SDEDGYVSLF++R +   F+ H EN EK+RIS+W AH+NA+FD+CWIK+
Sbjct: 78  KTLNNSHIFALSDEDGYVSLFNTRSRFSLFSSHEENTEKSRISEWEAHRNAVFDVCWIKD 137

Query: 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
           DT ++TASGDQ++K+WD ++ +C G L GH GS+KS+ SHPTN D++VSGSRDGSFA+WD
Sbjct: 138 DTQMITASGDQSMKLWDVQEMECIGILRGHKGSVKSISSHPTNHDLIVSGSRDGSFALWD 197

Query: 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS 239
           LR  S  K    E ++ ++AVVKGAHL   +KR+ R+K+AS SITSVLYLKDE+S+ATA 
Sbjct: 198 LRTPSCSKVGSEELYLRATAVVKGAHLSPYAKRIRRQKSASKSITSVLYLKDELSVATAG 257

Query: 240 AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299
           AV+SIVKFWDTRNLK  IT   P    SS K+TRLHGISSLSQD+NG FL+ASCMD+RIY
Sbjct: 258 AVDSIVKFWDTRNLKNAITMCQP---KSSEKDTRLHGISSLSQDANGAFLSASCMDNRIY 314

Query: 300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359
           LYNVLQL+KGP++ FSGC+I+SF+VKS I P+AS++LSGS+DGNA+VWQV+KP  DPI L
Sbjct: 315 LYNVLQLEKGPVKSFSGCQIDSFFVKSAISPDASYLLSGSTDGNAHVWQVDKPHEDPITL 374

Query: 360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSV-RRRVMAIPSTE 418
             H+GEV+AV+W   E GK VTSSDD+TVR+W+ +N+ CSS + P+S  R+R+MA+PS E
Sbjct: 375 TKHNGEVSAVDWSSFEVGKFVTSSDDFTVRIWNSQNNSCSSSKRPTSCNRKRIMAMPSIE 434

Query: 419 CRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKKIPS---FDTK 475
             K   + +  +  +      NS   ++  +         + TPE++ K+  S    D  
Sbjct: 435 HAKDSDSSDSPFFDRARAAPSNSKSYMDMEHK--------LSTPESKVKRSISDATADLI 486

Query: 476 EAFEKTPEASLNSPSSVLNPPSSVKRRTIRDYFLVTP 512
           E+FEKTPEA+  SPSSVL+PPSS+KR+TIRDYFLV P
Sbjct: 487 ESFEKTPEANSKSPSSVLHPPSSLKRKTIRDYFLVAP 523

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	512
TAIR|locus:2089179	535	AT3G27640 "AT3G27640" [Arabido	0.982	0.940	0.579	1.7e-153
UNIPROTKB|Q5ZJW8	720	DTL "Denticleless protein homo	0.648	0.461	0.366	2.5e-56
UNIPROTKB|Q6GPU3	711	dtl-b "Denticleless protein ho	0.644	0.464	0.354	1.6e-55
MGI|MGI:1924093	729	Dtl "denticleless homolog (Dro	0.642	0.451	0.354	6.1e-55
UNIPROTKB|E1BJV8	730	LOC539953 "Uncharacterized pro	0.642	0.450	0.368	1.6e-54
UNIPROTKB|Q9NZJ0	730	DTL "Denticleless protein homo	0.642	0.450	0.357	3.4e-54
UNIPROTKB|Q6P1W0	713	dtl "Denticleless protein homo	0.802	0.576	0.321	5.5e-54
UNIPROTKB|Q4V837	710	dtl-a "Denticleless protein ho	0.646	0.466	0.356	3e-53
UNIPROTKB|E2QT91	731	DTL "Uncharacterized protein"	0.642	0.450	0.356	3.8e-53
UNIPROTKB|F1S2V6	731	DTL "Uncharacterized protein"	0.636	0.445	0.358	6.3e-53

TAIR|locus:2089179 AT3G27640 "AT3G27640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1497 (532.0 bits), Expect = 1.7e-153, P = 1.7e-153
 Identities = 304/525 (57%), Positives = 375/525 (71%)

Query:     1 MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCK 60
             M + +S S F+N+  RELNGF+ RKRP+F D      EI  V VEH G  TPPLAVSFCK
Sbjct:    20 MESSRSRSVFVNIGLRELNGFRVRKRPFFADSELICREIAGVAVEHDGIWTPPLAVSFCK 79

Query:    61 TSKNSHIFAVSDEDGYVSLFDSR-RKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119
             TS+NS +FAVSDEDG+VSLF+S  +K  S A H+EN EKAR  DW+AH NAIFD+ WIK 
Sbjct:    80 TSRNSQLFAVSDEDGHVSLFNSSSKKFASSATHQENTEKARFRDWIAHYNAIFDISWIKG 139

Query:   120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
             D+ +LTASGDQTIK+WD E+ KCTG L+GHTG++KS+CSHPTNSD+LVSGSRDG FA+WD
Sbjct:   140 DSCLLTASGDQTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWD 199

Query:   180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS 239
             LRCKSS  S+  E  + S+ +VKGAHL   SKR+ RRKAAS SITSVLY+KDE++IATA 
Sbjct:   200 LRCKSS--SHKEEFCINSTGMVKGAHLSPLSKRIRRRKAASSSITSVLYVKDEITIATAG 257

Query:   240 AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299
             A +S +KFWD R LKA   QA P ++ ++ KE R HGI SLSQDS+G +LTASC D+RIY
Sbjct:   258 APDSALKFWDIRKLKAPFAQASPQSDPTNTKEKRSHGIVSLSQDSSGTYLTASCKDNRIY 317

Query:   300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359
             LYN L+LDKGP+Q FSGCRI+SF+V++ I P+  ++LSGSSDGNAY+WQVNKPQ DPI L
Sbjct:   318 LYNTLRLDKGPVQSFSGCRIDSFFVRTMISPDGEYVLSGSSDGNAYIWQVNKPQVDPIIL 377

Query:   360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN---XXXXXXXXXXXXXXXVMAIPS 416
             K HD EVTAV+W P+E GK+ T+SDD+TVRLW++EN                  V A+ +
Sbjct:   378 KGHDFEVTAVDWSPSEIGKVATASDDFTVRLWNIENNICTNANATASVSRVKRRVTALSN 437

Query:   417 TECR-KLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEAQKKK------I 469
             TE + +L MN E     K S  S +SDD  N    +D ++MPIIRTPE+QKKK      +
Sbjct:   438 TEAKERLEMNRETESPQKHS--SLSSDDDYN----ND-QSMPIIRTPESQKKKTSSSSSL 490

Query:   470 PSFDTKEAF--EKTPEAXXXXXXXXXXXXXXXKRRTIRDYFLVTP 512
              S  ++E    E+TPE                KRRTIRDYFLVTP
Sbjct:   491 SSLSSEEDIICERTPETTFNSPSSVLNPPSSVKRRTIRDYFLVTP 535

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

UNIPROTKB|Q5ZJW8 DTL "Denticleless protein homolog" [Gallus gallus (taxid:9031)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 133/363 (36%), Positives = 192/363 (52%)

Query:    48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
             G   PP   SF       H+ AV++E+G+V L+D+           +N  K    +W AH
Sbjct:    43 GMPVPPFGCSFSAAPNFEHVLAVANEEGFVRLYDTEA---------QNTTKLISKEWQAH 93

Query:   108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
              NA+FDL W+  +  I+TASGDQT K+WD    +  G   GH  S+KS+        +  
Sbjct:    94 SNAVFDLAWVPGEHRIVTASGDQTAKVWDVRAGELLGICKGHQCSLKSVAFSRFEKAVFC 153

Query:   168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS--------QSKRVSRRKAA 219
             +G RDG+  +WD RC      N  + F      + GAH +         + KR + R  A
Sbjct:   154 TGGRDGNIMVWDTRC------NKKDGFYRQVNQISGAHNVVDRQTPSKLRKKRQNLRGLA 207

Query:   220 SM-----SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS--SAKET 272
              +     S+T VL L+DE ++ +A AV+ ++K WD R   A   Q    ++S       T
Sbjct:   208 PLVDFQQSVTVVL-LQDEHTLISAGAVDGVIKVWDLRKNYAAYRQDPVPSKSFFYPGTST 266

Query:   273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332
             R  G SSL  DS G  L A+C D  IY++N+  L   P+  FSG +  +FY+KS I P+ 
Sbjct:   267 RKLGYSSLVLDSTGANLFANCTDDSIYMFNMTSLKTFPVAVFSGHQNSTFYIKSSISPDD 326

Query:   333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
               ++SGSSD NAY+W+V++P   P  L  H  EVT++ WCP++  KI T SDD TVR+W 
Sbjct:   327 QFLVSGSSDCNAYIWKVSEPSLPPRILVGHSQEVTSIAWCPSDFTKIATCSDDNTVRIWR 386

Query:   393 LEN 395
             L++
Sbjct:   387 LQH 389

GO:0005737 "cytoplasm" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005813 "centrosome" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0031572 "G2 DNA damage checkpoint" evidence=ISS

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0019985 "translesion synthesis" evidence=ISS

GO:0009411 "response to UV" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0000209 "protein polyubiquitination" evidence=ISS

UNIPROTKB|Q6GPU3 dtl-b "Denticleless protein homolog B" [Xenopus laevis (taxid:8355)]

 Score = 553 (199.7 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
 Identities = 128/361 (35%), Positives = 191/361 (52%)

Query:    48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
             G   PP   +F      SH+ AV++E+G V L+D+        C   + ++  + +++AH
Sbjct:    47 GRAVPPFGCAFSTVPGMSHVLAVANEEGIVRLYDTE-------CG--DMQRLVVKEFMAH 97

Query:   108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
              NA+FD+ W+  +  ++TASGDQT K+WD +  +  G   GH  S+KS+        +  
Sbjct:    98 TNAVFDIAWVPGEHKLVTASGDQTAKLWDVKAGELIGECKGHQCSLKSVAFSKFERAVFS 157

Query:   168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH--LLSQS-KRVSRRK------A 218
             +G RDG+  +WD RC      N  + F      + GAH  +  Q+  +V +RK      A
Sbjct:   158 TGGRDGNIMVWDTRC------NKKDGFYRQVNQITGAHNAIDKQTPSKVKKRKPSIRGLA 211

Query:   219 ASM----SITSVLYLKDEVSIATASAVNSIVKFWDTR-NLKAQITQAWP-HAESSSAKET 272
              S+    S+T V++ +DE ++ +A AV+ +VK WD R N         P          T
Sbjct:   212 PSVDSQQSVTVVIF-QDEYTVISAGAVDGVVKIWDLRKNYSTYRQDPVPVKLFPYPGNST 270

Query:   273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332
             R  G SSL  D  G  L ASC D  +Y++N   L   P+  F G +  +FY+K+ + P+ 
Sbjct:   271 RKLGYSSLVLDPTGTNLFASCTDDNVYMFNATGLKTDPVSVFRGHQNSTFYIKASVSPDG 330

Query:   333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
               +LSGSSD +AY+WQV+ P A PI L  H  EVT+V WC ++  KI T SDD TVR+W 
Sbjct:   331 QFLLSGSSDHSAYIWQVSDPLAAPINLIGHCQEVTSVAWCQSDFTKIATCSDDNTVRIWR 390

Query:   393 L 393
             L
Sbjct:   391 L 391

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0009411 "response to UV" evidence=ISS

GO:0019985 "translesion synthesis" evidence=ISS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISS

GO:0031572 "G2 DNA damage checkpoint" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

MGI|MGI:1924093 Dtl "denticleless homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 128/361 (35%), Positives = 186/361 (51%)

Query:    48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
             G   PP   +FC      HI AV++E+G+V L+++  +     C +E         W+AH
Sbjct:    47 GVPVPPFGCTFCTAPSMEHILAVANEEGFVRLYNTESQTSKKTCFKE---------WMAH 97

Query:   108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
              NA+FDL W+  +  ++TA+GDQT K WD    +  G   GH  S+KS+        +  
Sbjct:    98 WNAVFDLAWVPGELKLVTAAGDQTAKFWDVRAGELMGTCKGHQCSLKSVAFPKFQKAVFS 157

Query:   168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA--------- 218
             +G RDG+  IWD RC      N  + F      + GAH  +  +  S+ K          
Sbjct:   158 TGGRDGNIMIWDTRC------NKKDGFYRQVNQISGAHNTADKQTPSKPKKKQNSKGLAP 211

Query:   219 ---ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS---SAKET 272
                +  S+T VL+ +DE ++ +A AV+ I+K WD R       Q  P A  S       T
Sbjct:   212 AVDSQQSVTVVLF-QDENTLVSAGAVDGIIKVWDLRKNYTAYRQE-PIASKSFLYPGTST 269

Query:   273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332
             R  G SSL  DS G  L A+C D  IY++N+  L   P+  F+G +  +FYVKS + P+ 
Sbjct:   270 RKLGYSSLVLDSTGSTLFANCTDDNIYMFNMTGLKTSPVAVFNGHQNSTFYVKSSLSPDD 329

Query:   333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
               ++SGSSD  AY+W+V+ P   P  L  H  EVT+V WCP++  KI T SDD T+++W 
Sbjct:   330 QFLISGSSDEAAYIWKVSMPWHPPTVLLGHSQEVTSVCWCPSDFTKIATCSDDNTLKIWR 389

Query:   393 L 393
             L
Sbjct:   390 L 390

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0006513 "protein monoubiquitination" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0009411 "response to UV" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0019985 "translesion synthesis" evidence=ISO

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISO

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISO

GO:0031572 "G2 DNA damage checkpoint" evidence=ISO

GO:0051726 "regulation of cell cycle" evidence=ISO

UNIPROTKB|E1BJV8 LOC539953 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 133/361 (36%), Positives = 190/361 (52%)

Query:    48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
             G   PP   +F       HI AV++E+G+V L+++         H   + K  I +W+AH
Sbjct:    47 GTPVPPFGCTFSSAPSMEHILAVANEEGFVRLYNTES-------H--TSRKKCIKEWMAH 97

Query:   108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
              NA+FDL W+  +  ++TA+GDQT K WD    +  G   GH  S+KS+        +  
Sbjct:    98 WNAVFDLAWVPGEFKLVTAAGDQTAKFWDVNAGELIGTCKGHQCSLKSVAFSKFEKAVFC 157

Query:   168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH--LLSQS------KRVSRRKAA 219
             +G RDG+  +WD RC      N  + F      + GAH  L  Q+      K+ S+  A 
Sbjct:   158 TGGRDGNIMVWDTRC------NKKDGFYRQVNQISGAHNTLDKQTPSKPKKKQNSKGLAP 211

Query:   220 SM----SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS---SAKET 272
             S+    S+T VL+ +DE ++ +A AV+ I+K WD R       Q  P A  S       T
Sbjct:   212 SVDFQQSVTVVLF-QDENTLVSAGAVDGIIKIWDLRKNYTAYRQE-PIASKSFLYPGSST 269

Query:   273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332
             R  G SSL  DS G  L A+C D  IY++N+  L   P+  FSG +  +FYVKS I P+ 
Sbjct:   270 RKLGYSSLILDSTGSTLFANCTDDNIYMFNMTGLKTSPVAVFSGHQNSTFYVKSSISPDD 329

Query:   333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
               ++SGSSD  AY+W+V+ P   P  L  H  EVT+V WCP++  KI T SDD T+++W 
Sbjct:   330 QFLVSGSSDEAAYIWKVSMPWHPPTVLLGHSQEVTSVCWCPSDFTKIATCSDDNTLKVWR 389

Query:   393 L 393
             L
Sbjct:   390 L 390

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0031572 "G2 DNA damage checkpoint" evidence=IEA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0019985 "translesion synthesis" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q9NZJ0 DTL "Denticleless protein homolog" [Homo sapiens (taxid:9606)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 129/361 (35%), Positives = 189/361 (52%)

Query:    48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
             G   PP   +F       H+ AV++E+G+V L+++  +  SF        K    +W+AH
Sbjct:    47 GVPVPPFGCTFSSAPNMEHVLAVANEEGFVRLYNTESQ--SF-------RKKCFKEWMAH 97

Query:   108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
              NA+FDL W+  +  ++TA+GDQT K WD +  +  G   GH  S+KS+        +  
Sbjct:    98 WNAVFDLAWVPGELKLVTAAGDQTAKFWDVKAGELIGTCKGHQCSLKSVAFSKFEKAVFC 157

Query:   168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK--------AA 219
             +G RDG+  +WD RC      N  + F      + GAH  S  +  S+ K        A 
Sbjct:   158 TGGRDGNIMVWDTRC------NKKDGFYRQVNQISGAHNTSDKQTPSKPKKKQNSKGLAP 211

Query:   220 SM----SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS---SAKET 272
             S+    S+T VL+ +DE ++ +A AV+ I+K WD R       Q  P A  S       T
Sbjct:   212 SVDFQQSVTVVLF-QDENTLVSAGAVDGIIKVWDLRKNYTAYRQE-PIASKSFLYPGSST 269

Query:   273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332
             R  G SSL  DS G  L A+C D  IY++N+  L   P+  F+G +  +FYVKS + P+ 
Sbjct:   270 RKLGYSSLILDSTGSTLFANCTDDNIYMFNMTGLKTSPVAIFNGHQNSTFYVKSSLSPDD 329

Query:   333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
               ++SGSSD  AY+W+V+ P   P  L  H  EVT+V WCP++  KI T SDD T+++W 
Sbjct:   330 QFLVSGSSDEAAYIWKVSTPWQPPTVLLGHSQEVTSVCWCPSDFTKIATCSDDNTLKIWR 389

Query:   393 L 393
             L
Sbjct:   390 L 390

GO:0005737 "cytoplasm" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009411 "response to UV" evidence=IDA

GO:0019985 "translesion synthesis" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IDA

GO:0006513 "protein monoubiquitination" evidence=IDA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IDA

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0031572 "G2 DNA damage checkpoint" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0000209 "protein polyubiquitination" evidence=IDA;TAS

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005813 "centrosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q6P1W0 dtl "Denticleless protein homolog" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 144/448 (32%), Positives = 215/448 (47%)

Query:    48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
             G   PP   +F      SH+ AV++E+G V L+D+        C   + ++  + +++AH
Sbjct:    47 GAAVPPFGCAFSTVPDMSHVLAVANEEGIVRLYDTE-------CR--DVQRLVVKEFMAH 97

Query:   108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
              NA+FD+ W+  +  ++TASGDQT K+WD +     G   GH  S+KS+        +  
Sbjct:    98 TNAVFDIAWVPGEHKLVTASGDQTAKLWDVKAGDLIGECKGHQCSLKSVAFSKFEKAVFS 157

Query:   168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH--LLSQS-KRVSRRK------A 218
             +G RDG+  +WD RC      N  + F      + GAH  L  Q+  +V +RK      A
Sbjct:   158 TGGRDGNIMVWDTRC------NKKDGFYRQVNQITGAHNALDKQTPSKVKKRKPYVRGLA 211

Query:   219 ASM----SITSVLYLKDEVSIATASAVNSIVKFWDTR-NLKAQITQAWP-HAESSSAKET 272
              S+    S+T V++ +DE +I +A AV+ IVK WD R N  A      P          T
Sbjct:   212 PSVDSQQSVTVVIF-QDEHTIISAGAVDGIVKVWDLRKNYSAYRQDPVPAKLFPYPGNST 270

Query:   273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332
             R  G S+L  D  G  L ASC D  +Y++N   L   P+  F G +  +FY+K+ + P+ 
Sbjct:   271 RKLGYSNLVLDPTGTNLFASCTDDNVYMFNATGLKTEPVSVFGGHQNSTFYIKTSVSPDG 330

Query:   333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
               +LSGSSD +AY+WQV+ P+  P+ L  H  EVT+V WC ++  KI T SDD TVR+W 
Sbjct:   331 QFLLSGSSDHSAYIWQVSDPKVPPVTLTGHCQEVTSVAWCQSDFTKIATCSDDNTVRVWR 390

Query:   393 L----ENXXXXXXXXXXXXXXXVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQI 448
             L    E+                  +P +    L   G+P  +   S  S  +       
Sbjct:   391 LKRSSEDSAQSDKTETVGWACQKKCVPPSMAANLCTPGKPSMIPSSSLMSSPTPATCAPS 450

Query:   449 NSSDPKNMPIIRTPEAQKKKIPSFDTKE 476
              + D   MP   TP +    IP   T +
Sbjct:   451 YTGDLP-MPS-STPVSALLPIPKLQTPQ 476

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0009411 "response to UV" evidence=ISS

GO:0019985 "translesion synthesis" evidence=ISS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISS

GO:0031572 "G2 DNA damage checkpoint" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|Q4V837 dtl-a "Denticleless protein homolog A" [Xenopus laevis (taxid:8355)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 129/362 (35%), Positives = 193/362 (53%)

Query:    48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
             G   PP   +F      SH+ AV++E+G V L+D+        C   + ++  + +++AH
Sbjct:    47 GMPVPPFGCAFSTVPDMSHVLAVANEEGIVRLYDTE-------CR--DMQRLLMKEFMAH 97

Query:   108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
              NA+FD+ W+  +  ++TASGDQT K+WD    +  G   GH  S+KS+        +  
Sbjct:    98 TNAVFDIAWVPGEHKLVTASGDQTAKLWDVMAGELIGECRGHQCSLKSVSFSKFERAVFS 157

Query:   168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH--LLSQS-KRVSRRK------A 218
             +G RDG+  +WD RC  S K    + F      + GAH  +  Q+  ++ +RK      A
Sbjct:   158 TGGRDGNIMMWDTRC--SKK----DGFYRQVNQITGAHNAIDKQTPSKMKKRKPSIRGLA 211

Query:   219 ASM----SITSVLYLKDEVSIATASAVNSIVKFWDTR-NLKAQITQAWPHAESS-SAKET 272
              S+    S+T V++ +DE +I +A AV+ +VK WD R N  A      P          T
Sbjct:   212 PSVDSQQSVTVVIF-QDEYTIISAGAVDGVVKIWDLRKNYSAYRQDPVPVKHFPYPGNST 270

Query:   273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332
             R  G SSL  D  G  L ASC D  +Y++N   L   P+  F G +  +FY+K+ + P+ 
Sbjct:   271 RKLGYSSLVLDPTGTNLFASCTDDNVYMFNATGLKTDPVSIFRGHQNSTFYIKASVSPDG 330

Query:   333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
               +LSGSSD +AY+WQV+ P A P+ L  H  EVT+V WC ++  KI T SDD TVR+W 
Sbjct:   331 QFLLSGSSDHSAYIWQVSDPMAAPVTLMGHCQEVTSVAWCQSDFTKIATCSDDNTVRVWR 390

Query:   393 LE 394
             L+
Sbjct:   391 LK 392

GO:0000209 "protein polyubiquitination" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0009411 "response to UV" evidence=ISS

GO:0019985 "translesion synthesis" evidence=ISS

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISS

GO:0031572 "G2 DNA damage checkpoint" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|E2QT91 DTL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 129/362 (35%), Positives = 193/362 (53%)

Query:    48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
             G   PP   +F       HI AV++E+G+V L+++  +      +R+   K    +W+AH
Sbjct:    47 GVPVPPFGCTFSSAPNMEHILAVANEEGFVRLYNTESQ-----AYRKKCVK----EWMAH 97

Query:   108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
              NA+FDL W+  +  ++TA+GDQT K WD +  +  G   GH  S+KS+        +  
Sbjct:    98 WNAVFDLAWVPGELKLVTAAGDQTAKFWDVKAGELIGTCKGHQCSLKSVAFSKFEKAVFC 157

Query:   168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH--LLSQS------KRVSRRKAA 219
             +G RDG+  +WD RC      N  + F      + GAH  L  Q+      K+ S+  A 
Sbjct:   158 TGGRDGNIMVWDTRC------NKKDGFYRQVNQISGAHNTLDKQTPSKPKKKQNSKGLAP 211

Query:   220 SM----SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS---SAKET 272
             S+    S+T VL+ +DE ++ +A AV+ ++K WD R       Q  P A  S       T
Sbjct:   212 SVDFQQSVTVVLF-QDENTLISAGAVDGVIKIWDLRKNYTAYRQE-PIASKSFLYPGSST 269

Query:   273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEICPN 331
             R  G SSL  DS G  L A+C D  IY++N+  L   P +  F+G +  +FYVKS + P+
Sbjct:   270 RKLGYSSLILDSTGSTLFANCTDDNIYMFNMTGLKTSPAVAIFNGHQNSTFYVKSSLSPD 329

Query:   332 ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
                ++SGSSD  AY+W+V+ P   P  L+ H  EVT+V WCP++  KI T SDD T+++W
Sbjct:   330 DQFLVSGSSDEAAYIWKVSTPWHPPTVLQGHSQEVTSVCWCPSDFTKIATCSDDNTLKIW 389

Query:   392 SL 393
              L
Sbjct:   390 RL 391

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0031572 "G2 DNA damage checkpoint" evidence=IEA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0019985 "translesion synthesis" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|F1S2V6 DTL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 131/365 (35%), Positives = 195/365 (53%)

Query:    48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
             G   PP   +F       HI AV++E+G+V L+++           +   K  I +W+AH
Sbjct:    47 GVPVPPFGCTFSSAPSMEHILAVANEEGFVRLYNTES---------QTGRKKCIKEWMAH 97

Query:   108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
              NA+FDL W+  +  ++TA+GDQT K WD +  +  G   GH  S+KS+        +  
Sbjct:    98 WNAVFDLAWVPGELKLVTAAGDQTAKFWDVKAGELMGTCKGHQCSLKSVAFSKFEKAVFC 157

Query:   168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH--LLSQS------KRVSRRKAA 219
             +G RDG+  +WD RC      N  + F      + GAH  L  Q+      K+ S+  A 
Sbjct:   158 TGGRDGNIMVWDTRC------NKKDGFYRQVNQISGAHNTLDKQTPSKPKKKQNSKGLAP 211

Query:   220 SM----SITSVLYLKDEVSIATASAVNSIVKFWDTR-NLKAQ-----ITQAWPHAESSSA 269
             S+    S+T VL+ +DE ++ +A AV+ ++K WD R N  A       ++ +P+  SS  
Sbjct:   212 SVDSQQSVTVVLF-QDENTLVSAGAVDGVIKIWDLRKNYTAYRQEPIASKCFPYPGSS-- 268

Query:   270 KETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI 328
               TR  G SSL  DS G  L A+C D  IY++N+  L   P +  F+G +  +FYVKS I
Sbjct:   269 --TRKLGYSSLILDSTGSTLFANCTDDNIYMFNMTGLKTSPAVAIFNGHQNSTFYVKSSI 326

Query:   329 CPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTV 388
              P+   ++SGSSD  AY+W+V+ P   P  L  H  EVT+V WCP++  KI T SDD T+
Sbjct:   327 SPDDQFLVSGSSDEAAYIWKVSTPWHPPTVLLGHSQEVTSVCWCPSDFTKIATCSDDNTL 386

Query:   389 RLWSL 393
             ++W L
Sbjct:   387 KVWRL 391

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0031572 "G2 DNA damage checkpoint" evidence=IEA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA

GO:0019985 "translesion synthesis" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	512
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-25
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-16
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  114 bits (287), Expect = 1e-28
 Identities = 75/341 (21%), Positives = 130/341 (38%), Gaps = 67/341 (19%)

Query: 56  VSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC 115
           V+    S +  + A    DG + ++D    L +    R             H   + D+ 
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWD----LETGELLRTL---------KGHTGPVRDVA 58

Query: 116 WIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSF 175
              + T + + S D+TI++WD E  +C   L GHT  + S+   P +  IL S SRD + 
Sbjct: 59  ASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTI 117

Query: 176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSI 235
            +WD+                              K ++  +  +  + SV +  D   +
Sbjct: 118 KVWDVE---------------------------TGKCLTTLRGHTDWVNSVAFSPDGTFV 150

Query: 236 ATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG----ISSLSQDSNGVFLTA 291
           A++S  +  +K WD R  K   T               L G    ++S++   +G  L +
Sbjct: 151 ASSSQ-DGTIKLWDLRTGKCVAT---------------LTGHTGEVNSVAFSPDGEKLLS 194

Query: 292 SCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351
           S  D  I L+++       +    G       V     P+   + SGS DG   VW +  
Sbjct: 195 SSSDGTIKLWDLSTGKC--LGTLRGHENGVNSVA--FSPDGYLLASGSEDGTIRVWDLRT 250

Query: 352 PQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
            +     L  H   VT++ W P+   ++ + S D T+R+W 
Sbjct: 251 GECVQ-TLSGHTNSVTSLAWSPD-GKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  104 bits (261), Expect = 5e-25
 Identities = 68/298 (22%), Positives = 121/298 (40%), Gaps = 52/298 (17%)

Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDIL 166
           H   +  + +  +   + T SGD TIK+WD E  +    L GHTG ++ + +   +   L
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYL 66

Query: 167 VSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSV 226
            SGS D +  +WDL         C  +           H                 ++SV
Sbjct: 67  ASGSSDKTIRLWDLE-----TGECVRTLT--------GHTS--------------YVSSV 99

Query: 227 LYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG 286
            +  D   I ++S+ +  +K WD    K   T                  ++S++   +G
Sbjct: 100 AFSPDG-RILSSSSRDKTIKVWDVETGKCLTTL-----------RGHTDWVNSVAFSPDG 147

Query: 287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKS-EICPNASHILSGSSDGNAY 345
            F+ +S  D  I L+++       +   +G    +  V S    P+   +LS SSDG   
Sbjct: 148 TFVASSSQDGTIKLWDLRTG--KCVATLTG---HTGEVNSVAFSPDGEKLLSSSSDGTIK 202

Query: 346 VWQVNKPQADPIK-LKSHDGEVTAVNWCPNEAGKIVTS-SDDYTVRLWSLENSRCSSM 401
           +W ++  +   +  L+ H+  V +V + P+  G ++ S S+D T+R+W L    C   
Sbjct: 203 LWDLSTGKC--LGTLRGHENGVNSVAFSPD--GYLLASGSEDGTIRVWDLRTGECVQT 256

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 85.5 bits (210), Expect = 1e-17
 Identities = 75/358 (20%), Positives = 134/358 (37%), Gaps = 59/358 (16%)

Query: 55  AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDL 114
           +++    S +  +      DG + L+D                         H +++  L
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL-----------HDSSVSKL 115

Query: 115 CWIKEDTNILTASG---DQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGS 170
                D N +  +    D T+K+WD     K    L GH+ S+ SL   P    +    S
Sbjct: 116 ALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175

Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
            DG+  +WDLR                             K +S     +  ++S+ +  
Sbjct: 176 LDGTIKLWDLR---------------------------TGKPLSTLAGHTDPVSSLAFSP 208

Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290
           D   +  + + +  ++ WD    K   +    H++S          +SS S D +   L 
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV---------VSSFSPDGS--LLA 257

Query: 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKS-EICPNASHILSGSSDGNAYVWQV 349
           +   D  I L++ L+     ++  SG    S  V S    P+   + SGSSDG   +W +
Sbjct: 258 SGSSDGTIRLWD-LRSSSSLLRTLSG---HSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313

Query: 350 NKPQ-ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSS 406
              +    + LK H+G V+++++ P+ +  +   SDD T+RLW L   +        S
Sbjct: 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 50/266 (18%), Positives = 96/266 (36%), Gaps = 56/266 (21%)

Query: 37  TEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENA 96
            E G       G  +   +V+F   S +  I + S  D  + ++D    + +  C     
Sbjct: 80  LETGECVRTLTGHTSYVSSVAF---SPDGRILSSSSRDKTIKVWD----VETGKC----- 127

Query: 97  EKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSL 156
               ++    H + +  + +  + T + ++S D TIK+WD    KC   L GHTG + S+
Sbjct: 128 ----LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 157 CSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR 216
              P     L+S S DG+  +WDL         C  +                       
Sbjct: 184 AFSPDGEK-LLSSSSDGTIKLWDLSTGK-----CLGTLRGHEN----------------- 220

Query: 217 KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276
                 + SV +  D   +  + + +  ++ WD R  +             +      + 
Sbjct: 221 -----GVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGE----------CVQTLSGHT-NS 263

Query: 277 ISSLSQDSNGVFLTASCMDHRIYLYN 302
           ++SL+   +G  L +   D  I +++
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 82.8 bits (203), Expect = 6e-17
 Identities = 86/365 (23%), Positives = 143/365 (39%), Gaps = 48/365 (13%)

Query: 57  SFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRE---NAEKARISDWVAHQNAIFD 113
           +  K  K S +    +    +SL  S   +   A   +   +           H+++I  
Sbjct: 11  NKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITS 70

Query: 114 LCWIKEDTNILTASGDQTIKIWDAEK-KKCTGALMG-HTGSIKSLC-SHPTNSDILVSGS 170
           + +  +   +L+ S D TIK+WD +  +K   +L G H  S+  L  S P  + IL++ S
Sbjct: 71  IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130

Query: 171 -RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL 229
             DG+  +WDL                           +  K +   +  S S+TS+ + 
Sbjct: 131 SLDGTVKLWDLS--------------------------TPGKLIRTLEGHSESVTSLAFS 164

Query: 230 KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL 289
            D   +A+ S+++  +K WD R  K   T A      SS            S D   +  
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA---------FSPDGGLLIA 215

Query: 290 TASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQV 349
           + S  D  I L++   L  G +   +     S  V S   P+ S + SGSSDG   +W +
Sbjct: 216 SGS-SDGTIRLWD---LSTGKLLRST-LSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDL 270

Query: 350 NKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRR 409
               +    L  H   V +V + P+    + + S D TVRLW LE  +  S  +      
Sbjct: 271 RSSSSLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329

Query: 410 RVMAI 414
            V ++
Sbjct: 330 PVSSL 334

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.5 bits (197), Expect = 3e-16
 Identities = 79/364 (21%), Positives = 136/364 (37%), Gaps = 45/364 (12%)

Query: 54  LAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFD 113
             ++      NS + A S  DG V L+D                   I     H  ++  
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK------------LIRTLEGHSESVTS 160

Query: 114 LCWIKEDTNILTASG-DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD 172
           L +  +   + + S  D TIK+WD    K    L GHT  + SL   P    ++ SGS D
Sbjct: 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220

Query: 173 GSFAIWDLRCK-------SSPKSNCAESFVFSSAVVKGA---------HLLSQSKRVSRR 216
           G+  +WDL          S    +   SF    +++             L S S  +   
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL 280

Query: 217 KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276
              S S+ SV +  D   +A+ S+  ++ + WD    K         + +    E  +  
Sbjct: 281 SGHSSSVLSVAFSPDGKLLASGSSDGTV-RLWDLETGK------LLSSLTLKGHEGPVSS 333

Query: 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL 336
           +S     S  + ++    D  I L+++        +        S  +     P+   + 
Sbjct: 334 LSFSPDGS--LLVSGGSDDGTIRLWDLRT-----GKPLKTLEGHSNVLSVSFSPDGRVVS 386

Query: 337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396
           SGS+DG   +W ++   +    L  H   VT++++ P+    + + S D T+RLW L+ S
Sbjct: 387 SGSTDGTVRLWDLSTG-SLLRNLDGHTSRVTSLDFSPDG-KSLASGSSDNTIRLWDLKTS 444

Query: 397 RCSS 400
             S 
Sbjct: 445 LKSV 448

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 139 KKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
             +    L GHTG + S+   P +   L SGS DG+  +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 140 KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
            K    L GHTG + S+   P + ++L SGS DG+  +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDIL 166
             + +  + +  +   + + S D T+++WD         L GHT  + SL   P +   L
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSL 427

Query: 167 VSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
            SGS D +  +WDL+      S   +  V +S 
Sbjct: 428 ASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASK 460

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 8/36 (22%), Positives = 16/36 (44%)

Query: 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWD 136
           +     H   +  + +  +   + + S D TIK+WD
Sbjct: 5   LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
            LK H G VT+V + P+    + + SDD TVR+W 
Sbjct: 6   TLKGHTGPVTSVAFSPDG-NLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
           LK H G VT+V + P+    + + SDD T++LW 
Sbjct: 8   LKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 6/31 (19%), Positives = 15/31 (48%)

Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWD 136
            H   +  + +  +   + + S D T+++WD
Sbjct: 9   GHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	512
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.98
KOG0289	506	consensus mRNA splicing factor [General function p	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
KOG4227	609	consensus WD40 repeat protein [General function pr	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG2048	691	consensus WD40 repeat protein [General function pr	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.92
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG1188	376	consensus WD40 repeat protein [General function pr	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG1334	559	consensus WD40 repeat protein [General function pr	99.88
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG1310	758	consensus WD40 repeat protein [General function pr	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG1963	792	consensus WD40 repeat protein [General function pr	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG1188	376	consensus WD40 repeat protein [General function pr	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.83
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.83
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.83
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.81
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.79
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.76
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.76
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.72
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.72
KOG2139	445	consensus WD40 repeat protein [General function pr	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
PRK03629	429	tolB translocation protein TolB; Provisional	99.69
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.69
PRK01742	429	tolB translocation protein TolB; Provisional	99.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.66
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
KOG2139	445	consensus WD40 repeat protein [General function pr	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.65
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.65
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.64
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.64
PRK02889	427	tolB translocation protein TolB; Provisional	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.62
KOG2321	703	consensus WD40 repeat protein [General function pr	99.61
KOG2315	566	consensus Predicted translation initiation factor	99.58
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.57
PRK05137	435	tolB translocation protein TolB; Provisional	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.56
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.56
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.54
PRK03629	429	tolB translocation protein TolB; Provisional	99.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.53
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.51
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.49
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.48
PRK00178	430	tolB translocation protein TolB; Provisional	99.47
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.46
PRK04792	448	tolB translocation protein TolB; Provisional	99.45
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.45
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.45
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.44
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.42
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.42
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.41
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.38
PRK01029	428	tolB translocation protein TolB; Provisional	99.38
KOG2314	698	consensus Translation initiation factor 3, subunit	99.37
KOG4547	541	consensus WD40 repeat-containing protein [General	99.36
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.35
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.35
KOG2314	698	consensus Translation initiation factor 3, subunit	99.34
PRK01029	428	tolB translocation protein TolB; Provisional	99.34
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.32
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.28
PRK04792	448	tolB translocation protein TolB; Provisional	99.27
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.26
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.21
KOG4547	541	consensus WD40 repeat-containing protein [General	99.2
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.19
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.19
COG4946	668	Uncharacterized protein related to the periplasmic	99.19
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.18
KOG2315	566	consensus Predicted translation initiation factor	99.18
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.17
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.16
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.15
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.15
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.13
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.13
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.12
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.09
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.07
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.07
PRK04043	419	tolB translocation protein TolB; Provisional	99.03
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.97
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.97
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.95
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.95
COG4946	668	Uncharacterized protein related to the periplasmic	98.93
PRK04043	419	tolB translocation protein TolB; Provisional	98.91
KOG2695	425	consensus WD40 repeat protein [General function pr	98.91
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.9
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.9
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.85
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.84
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.82
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.82
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.78
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.73
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.72
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.68
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.68
KOG2695	425	consensus WD40 repeat protein [General function pr	98.66
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.65
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.62
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.61
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.59
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.55
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.55
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.52
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.5
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.49
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.49
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.48
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.48
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.47
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.42
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.37
KOG3621	726	consensus WD40 repeat-containing protein [General	98.36
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.32
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.28
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.24
PRK02888	635	nitrous-oxide reductase; Validated	98.23
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.18
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.15
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.13
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.11
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.08
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.08
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.07
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.04
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.04
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.02
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.0
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.96
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.95
PRK02888	635	nitrous-oxide reductase; Validated	97.93
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.91
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.9
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.88
KOG3621	726	consensus WD40 repeat-containing protein [General	97.87
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.83
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.83
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.75
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.74
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.73
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.68
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.67
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.66
COG3391	381	Uncharacterized conserved protein [Function unknow	97.66
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.59
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.59
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.59
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.52
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.51
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.5
COG3391	381	Uncharacterized conserved protein [Function unknow	97.48
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.44
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.43
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.43
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.4
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.35
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.31
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.27
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.15
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.11
KOG2395	644	consensus Protein involved in vacuole import and d	97.04
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.04
KOG2444	238	consensus WD40 repeat protein [General function pr	97.03
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.02
PRK13616	591	lipoprotein LpqB; Provisional	96.99
PRK10115	686	protease 2; Provisional	96.96
PRK13616	591	lipoprotein LpqB; Provisional	96.95
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.91
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.89
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.87
KOG2395	644	consensus Protein involved in vacuole import and d	96.86
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.83
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.82
PHA02713	557	hypothetical protein; Provisional	96.76
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.73
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.72
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.71
PHA02713	557	hypothetical protein; Provisional	96.64
KOG2444	238	consensus WD40 repeat protein [General function pr	96.63
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.62
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.59
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.53
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.42
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.36
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.19
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.16
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.09
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.83
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.82
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.74
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.59
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.53
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.15
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.13
PHA03098	534	kelch-like protein; Provisional	94.78
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.66
COG5276	370	Uncharacterized conserved protein [Function unknow	94.62
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.5
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.44
PHA03098	534	kelch-like protein; Provisional	94.4
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.36
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	94.32
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.27
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.09
KOG2247	615	consensus WD40 repeat-containing protein [General	93.87
PRK10115	686	protease 2; Provisional	93.81
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.8
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.61
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.55
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.53
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.47
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.36
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.35
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.28
COG5167	776	VID27 Protein involved in vacuole import and degra	93.24
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.04
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.84
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.75
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.68
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.66
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.52
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.34
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.26
PHA02790	480	Kelch-like protein; Provisional	92.19
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.97
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.73
COG4590	733	ABC-type uncharacterized transport system, permeas	91.72
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.69
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.6
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.52
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.46
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	91.18
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.87
PHA02790	480	Kelch-like protein; Provisional	90.57
KOG2247	615	consensus WD40 repeat-containing protein [General	90.24
PRK13684	334	Ycf48-like protein; Provisional	90.18
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.02
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.87
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.19
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.1
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.81
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.4
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.99
PLN00033	398	photosystem II stability/assembly factor; Provisio	87.86
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	87.44
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.41
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.32
COG5167	776	VID27 Protein involved in vacuole import and degra	87.06
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	86.96
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.94
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.69
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.57
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.55
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.33
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.57
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	85.56
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.13
PF14727	418	PHTB1_N: PTHB1 N-terminus	84.99
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	84.94
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	84.65
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	84.46
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	84.4
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.33
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	83.9
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	83.81
COG4590	733	ABC-type uncharacterized transport system, permeas	83.74
PRK13684	334	Ycf48-like protein; Provisional	83.48
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	83.42
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	82.44
COG5276	370	Uncharacterized conserved protein [Function unknow	82.14
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	81.63
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	81.26
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	80.28

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-52  Score=353.82  Aligned_cols=326  Identities=21%  Similarity=0.367  Sum_probs=274.8

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .......||.++|.|++|   +|+|..||+|+.|.++++||+.+..+             +.+.++|.+.|.|++|+|||
T Consensus       106 rCssS~~GH~e~Vl~~~f---sp~g~~l~tGsGD~TvR~WD~~TeTp-------------~~t~KgH~~WVlcvawsPDg  169 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQF---SPTGSRLVTGSGDTTVRLWDLDTETP-------------LFTCKGHKNWVLCVAWSPDG  169 (480)
T ss_pred             eeccccCCCCCcEEEEEe---cCCCceEEecCCCceEEeeccCCCCc-------------ceeecCCccEEEEEEECCCc
Confidence            334467799999999999   99999999999999999999988755             78889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCee-eecccCcCCCEEEEEeeCCC----CCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          121 TNILTASGDQTIKIWDAEKKKC-TGALMGHTGSIKSLCSHPTN----SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      +.||+|+.||+|++||..+|++ ...+.+|...|++++|.|-.    ..+|++++.||.++|||+..+.+          
T Consensus       170 k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~----------  239 (480)
T KOG0271|consen  170 KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC----------  239 (480)
T ss_pred             chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE----------
Confidence            9999999999999999999876 46789999999999998732    36899999999999999985543          


Q ss_pred             eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                       ...+.+|..+|+|+.|--  ..++.+|+.|++|++|+...+....           .+.+|.+
T Consensus       240 -----------------~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r-----------~lkGHah  289 (480)
T KOG0271|consen  240 -----------------VRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCR-----------ELKGHAH  289 (480)
T ss_pred             -----------------EEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHH-----------hhcccch
Confidence                             336678999999999964  4577779999999999999877665           5788889


Q ss_pred             CeeEEEeC-----------CCC-------------------------CEEEEEecCCeEEEEEcccCCCCceEeeeecee
Q 010390          276 GISSLSQD-----------SNG-------------------------VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI  319 (512)
Q Consensus       276 ~i~~~~~~-----------~~~-------------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  319 (512)
                      .|+.++.+           |.+                         ..|++|+.|.++.+|+-.. ..+++....+|. 
T Consensus       290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~-~kkpi~rmtgHq-  367 (480)
T KOG0271|consen  290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK-SKKPITRMTGHQ-  367 (480)
T ss_pred             heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc-cccchhhhhchh-
Confidence            99988877           222                         3599999999999999754 234566666665 


Q ss_pred             ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          320 ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       320 ~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                       ..+..+.||||+++||+++.|..|++|+.++++. +..+++|-+.|+.++|+.|. ++|++|+.|.++++|++.+.++.
T Consensus       368 -~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkKl~  444 (480)
T KOG0271|consen  368 -ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF-LASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKKLK  444 (480)
T ss_pred             -hheeeEEECCCccEEEEeecccceeeeeCCCcch-hhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeeeec
Confidence             4578899999999999999999999999999987 58999999999999999999 89999999999999999998866


Q ss_pred             ccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390          400 SMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD  452 (512)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  452 (512)
                      .-+.                    .+.+..+     .+.|+|||...+.+...
T Consensus       445 ~DLp--------------------Gh~DEVf-----~vDwspDG~rV~sggkd  472 (480)
T KOG0271|consen  445 QDLP--------------------GHADEVF-----AVDWSPDGQRVASGGKD  472 (480)
T ss_pred             ccCC--------------------CCCceEE-----EEEecCCCceeecCCCc
Confidence            5321                    1233333     67788888777666443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.5e-48  Score=334.08  Aligned_cols=287  Identities=22%  Similarity=0.380  Sum_probs=259.1

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC--CC
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE--DT  121 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~~  121 (512)
                      ....|-+.||..+.|   |.|++.||||+.+|.++||+..+.             ..+.+|.+|.+.|.++.|+|.  +.
T Consensus       169 ~SQ~gd~rPis~~~f---S~ds~~laT~swsG~~kvW~~~~~-------------~~~~~l~gH~~~v~~~~fhP~~~~~  232 (459)
T KOG0272|consen  169 CSQVGDTRPISGCSF---SRDSKHLATGSWSGLVKVWSVPQC-------------NLLQTLRGHTSRVGAAVFHPVDSDL  232 (459)
T ss_pred             hhhccCCCcceeeEe---ecCCCeEEEeecCCceeEeecCCc-------------ceeEEEeccccceeeEEEccCCCcc
Confidence            344567888888888   999999999999999999998765             348889999999999999995  67


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      .|+||+.||++++|++.+..++..+.+|...|..++|+|+| ++|+|++.|.+-++||++++....              
T Consensus       233 ~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL--------------  297 (459)
T KOG0272|consen  233 NLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELL--------------  297 (459)
T ss_pred             ceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhH--------------
Confidence            89999999999999999999999999999999999999998 999999999999999999876543              


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                   ...+|...|.+++|++||..+++ |+.|..-+|||+++++++.           .+.+|..+|.+|+
T Consensus       298 -------------~QEGHs~~v~~iaf~~DGSL~~t-GGlD~~~RvWDlRtgr~im-----------~L~gH~k~I~~V~  352 (459)
T KOG0272|consen  298 -------------LQEGHSKGVFSIAFQPDGSLAAT-GGLDSLGRVWDLRTGRCIM-----------FLAGHIKEILSVA  352 (459)
T ss_pred             -------------hhcccccccceeEecCCCceeec-cCccchhheeecccCcEEE-----------EecccccceeeEe
Confidence                         44688999999999999998877 5589999999999999987           5788999999999


Q ss_pred             eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390          282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHILSGSSDGNAYVWQVNKPQADPIKLK  360 (512)
Q Consensus       282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~  360 (512)
                      |+|+|..|++|+.|++++|||++..  ..+..+..|.  ..|+.+.|+| .|.+|++++.|++++||...+..+ ...+.
T Consensus       353 fsPNGy~lATgs~Dnt~kVWDLR~r--~~ly~ipAH~--nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~-~ksLa  427 (459)
T KOG0272|consen  353 FSPNGYHLATGSSDNTCKVWDLRMR--SELYTIPAHS--NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP-LKSLA  427 (459)
T ss_pred             ECCCceEEeecCCCCcEEEeeeccc--ccceeccccc--chhhheEecccCCeEEEEcccCcceeeecCCCccc-chhhc
Confidence            9999999999999999999999874  3466666664  5688899998 689999999999999999988776 58899


Q ss_pred             cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       361 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      ||++.|.+++.++++ ..++|++.|.++++|.
T Consensus       428 GHe~kV~s~Dis~d~-~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  428 GHEGKVISLDISPDS-QAIATSSFDRTIKLWR  458 (459)
T ss_pred             CCccceEEEEeccCC-ceEEEeccCceeeecc
Confidence            999999999999999 8999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-47  Score=325.76  Aligned_cols=320  Identities=19%  Similarity=0.321  Sum_probs=262.2

Q ss_pred             cceeeecCcccccccccCCCCCC---------ceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECC
Q 010390           13 VRSRELNGFKARKRPYFGDVVTD---------FTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR   83 (512)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~   83 (512)
                      +.+++=.-.++++.|....++++         +.......+..+||...|.||+|   +|||+.||+|+.||.|++||.+
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaw---sPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAW---SPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEE---CCCcchhhccccCCeEEEecCC
Confidence            33333334455777754444443         23333556778999999999999   9999999999999999999988


Q ss_pred             CCCCccccccccccccceeccccCCCcEEEEEEec-----CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEe
Q 010390           84 RKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-----EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCS  158 (512)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~  158 (512)
                      ++++            ....+.+|+..|++++|.|     ..++|++++.||.|+|||+..+.++..+.+|+.+|+|+.|
T Consensus       188 tg~~------------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw  255 (480)
T KOG0271|consen  188 TGQQ------------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW  255 (480)
T ss_pred             CCCc------------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence            7753            3677899999999999987     5678999999999999999999999999999999999999


Q ss_pred             eCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe---------
Q 010390          159 HPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL---------  229 (512)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------  229 (512)
                      --+  .+|++|+.|++|++|+...+....                           .+.+|...|+.++.+         
T Consensus       256 GG~--gliySgS~DrtIkvw~a~dG~~~r---------------------------~lkGHahwvN~lalsTdy~LRtga  306 (480)
T KOG0271|consen  256 GGE--GLIYSGSQDRTIKVWRALDGKLCR---------------------------ELKGHAHWVNHLALSTDYVLRTGA  306 (480)
T ss_pred             cCC--ceEEecCCCceEEEEEccchhHHH---------------------------hhcccchheeeeeccchhhhhccc
Confidence            754  699999999999999998765544                           333444445444443         


Q ss_pred             --ecCC------------------------EEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390          230 --KDEV------------------------SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       230 --~~~~------------------------~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                        |.+.                        .-+++|++|.++.+|+....+....          .+.+|..-|+.+.|+
T Consensus       307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~----------rmtgHq~lVn~V~fS  376 (480)
T KOG0271|consen  307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT----------RMTGHQALVNHVSFS  376 (480)
T ss_pred             cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh----------hhhchhhheeeEEEC
Confidence              2122                        2344577999999999877664443          578888999999999


Q ss_pred             CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc
Q 010390          284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD  363 (512)
Q Consensus       284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~  363 (512)
                      ||++++++++.|..|++||.+++  +.+..+.+|.  ..+..++|+.|.++|++|+.|.++++|++++.+. ...+.+|.
T Consensus       377 Pd~r~IASaSFDkSVkLW~g~tG--k~lasfRGHv--~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-~~DLpGh~  451 (480)
T KOG0271|consen  377 PDGRYIASASFDKSVKLWDGRTG--KFLASFRGHV--AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-KQDLPGHA  451 (480)
T ss_pred             CCccEEEEeecccceeeeeCCCc--chhhhhhhcc--ceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-cccCCCCC
Confidence            99999999999999999998774  4566667664  4577899999999999999999999999998776 57789999


Q ss_pred             CCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      +.|.++.|+||| ..+++|+.|..+++|.
T Consensus       452 DEVf~vDwspDG-~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  452 DEVFAVDWSPDG-QRVASGGKDKVLRLWR  479 (480)
T ss_pred             ceEEEEEecCCC-ceeecCCCceEEEeec
Confidence            999999999999 8999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.8e-43  Score=288.26  Aligned_cols=288  Identities=18%  Similarity=0.249  Sum_probs=254.7

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      ..++||.+.|+++.|   ++|.++|++++.||.+.|||.-+...             +..+.-....|..++|+|.|+++
T Consensus        49 r~LkGH~~Ki~~~~w---s~Dsr~ivSaSqDGklIvWDs~TtnK-------------~haipl~s~WVMtCA~sPSg~~V  112 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDW---STDSRRIVSASQDGKLIVWDSFTTNK-------------VHAIPLPSSWVMTCAYSPSGNFV  112 (343)
T ss_pred             EEecccccceeeeEe---cCCcCeEEeeccCCeEEEEEcccccc-------------eeEEecCceeEEEEEECCCCCeE
Confidence            678999999999999   99999999999999999999866532             44445566899999999999999


Q ss_pred             EEEeCCCcEEEEeCCCC------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          124 LTASGDQTIKIWDAEKK------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      |+|+-|+...||++.+.      +..+.+.+|.+.+.|..|.++  ..|++++.|.+..+||+++++...          
T Consensus       113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~----------  180 (343)
T KOG0286|consen  113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQ----------  180 (343)
T ss_pred             EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEE----------
Confidence            99999999999999865      345678999999999999874  689999999999999999765433          


Q ss_pred             cccccccccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                       .+.+|.+.|.++.+.| +++.+++ |+-|+..++||++.+....           .+.+|...
T Consensus       181 -----------------~f~GH~gDV~slsl~p~~~ntFvS-g~cD~~aklWD~R~~~c~q-----------tF~ghesD  231 (343)
T KOG0286|consen  181 -----------------VFHGHTGDVMSLSLSPSDGNTFVS-GGCDKSAKLWDVRSGQCVQ-----------TFEGHESD  231 (343)
T ss_pred             -----------------EecCCcccEEEEecCCCCCCeEEe-cccccceeeeeccCcceeE-----------eecccccc
Confidence                             6678999999999999 6777766 5579999999999998776           58899999


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                      |+++.|.|+|.-+++|+.|++.++||++..  ..+..+........+++++||..|++|++|..|.++.+||.-+++. .
T Consensus       232 INsv~ffP~G~afatGSDD~tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~-v  308 (343)
T KOG0286|consen  232 INSVRFFPSGDAFATGSDDATCRLYDLRAD--QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER-V  308 (343)
T ss_pred             cceEEEccCCCeeeecCCCceeEEEeecCC--cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccce-E
Confidence            999999999999999999999999999873  4455566666677899999999999999999999999999988776 5


Q ss_pred             ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      ..+.+|+..|+++..+||| .-++||+.|..++||.
T Consensus       309 g~L~GHeNRvScl~~s~DG-~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  309 GVLAGHENRVSCLGVSPDG-MAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEeeccCCeeEEEEECCCC-cEEEecchhHheeecC
Confidence            7889999999999999999 8999999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-41  Score=276.85  Aligned_cols=296  Identities=16%  Similarity=0.270  Sum_probs=243.7

Q ss_pred             eEeecCCccCCcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      +...+.||++.|.+++.   .+. .+.+.+++.|..+.+|++.....        .-..+++.+.||+..|..+..++||
T Consensus         7 l~~tl~gh~d~Vt~la~---~~~~~~~l~sasrDk~ii~W~L~~dd~--------~~G~~~r~~~GHsH~v~dv~~s~dg   75 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAI---KIKNSDILVSASRDKTIIVWKLTSDDI--------KYGVPVRRLTGHSHFVSDVVLSSDG   75 (315)
T ss_pred             eeeeecCCCceEEEEEe---ecCCCceEEEcccceEEEEEEeccCcc--------ccCceeeeeeccceEecceEEccCC
Confidence            45578999999999999   444 57899999999999999876533        2245688999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      ++.++++.|+++++||+.+++..+.|.+|...|.+++|++++ ..+++|+.|.+|++|++........            
T Consensus        76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~------------  142 (315)
T KOG0279|consen   76 NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTI------------  142 (315)
T ss_pred             ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEE------------
Confidence            999999999999999999999999999999999999999998 8999999999999999864432110            


Q ss_pred             ccccccccccccceecccccccEEEEEEeecC-CEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDE-VSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                    ....+...|.|+.|+|+. +.++++++.|++|++||+++.+...           .+.+|.+.++.
T Consensus       143 --------------~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~-----------~~~gh~~~v~t  197 (315)
T KOG0279|consen  143 --------------HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT-----------TFIGHSGYVNT  197 (315)
T ss_pred             --------------ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh-----------ccccccccEEE
Confidence                          111226789999999984 4445556699999999999987665           47788899999


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      ++++|||..+++|+.||.+.+||++..+  .+..+..   ...+.+++|+|+.-+|+.+...+ |+|||+.+.... ..+
T Consensus       198 ~~vSpDGslcasGgkdg~~~LwdL~~~k--~lysl~a---~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v-~~l  270 (315)
T KOG0279|consen  198 VTVSPDGSLCASGGKDGEAMLWDLNEGK--NLYSLEA---FDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVV-EEL  270 (315)
T ss_pred             EEECCCCCEEecCCCCceEEEEEccCCc--eeEeccC---CCeEeeEEecCCceeEeeccCCc-eEEEeccchhhh-hhc
Confidence            9999999999999999999999997643  3444433   35688899999988888777554 999999887642 222


Q ss_pred             ----ccc-----cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          360 ----KSH-----DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       360 ----~~h-----~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                          .+.     .-...+++|++|| ..|++|-.|+.|++|.+.
T Consensus       271 ~~d~~g~s~~~~~~~clslaws~dG-~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  271 KLDGIGPSSKAGDPICLSLAWSADG-QTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cccccccccccCCcEEEEEEEcCCC-cEEEeeecCCcEEEEEee
Confidence                111     3346788999999 899999999999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.6e-42  Score=281.40  Aligned_cols=296  Identities=25%  Similarity=0.412  Sum_probs=257.7

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      ......+.||++.|+.+.|   +|+|.+||+|+.|..|.+|++....            +....+++|+++|..+.|.+|
T Consensus        37 ~ap~m~l~gh~geI~~~~F---~P~gs~~aSgG~Dr~I~LWnv~gdc------------eN~~~lkgHsgAVM~l~~~~d  101 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKF---HPDGSCFASGGSDRAIVLWNVYGDC------------ENFWVLKGHSGAVMELHGMRD  101 (338)
T ss_pred             cchhhhcCCCcceEEEEEE---CCCCCeEeecCCcceEEEEeccccc------------cceeeeccccceeEeeeeccC
Confidence            3556678899999999999   9999999999999999999976442            225567899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      +..|++++.|.+|+.||+++|++++.+++|...|+++.-+..|..++.+++.||++++||++.....+...         
T Consensus       102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---------  172 (338)
T KOG0265|consen  102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---------  172 (338)
T ss_pred             CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---------
Confidence            99999999999999999999999999999999999999777777899999999999999999776655432         


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                         ...+++++.|..++..++++| -|+.|++||++......           .+.+|...|+.
T Consensus       173 -------------------~kyqltAv~f~d~s~qv~sgg-Idn~ikvWd~r~~d~~~-----------~lsGh~DtIt~  221 (338)
T KOG0265|consen  173 -------------------NKYQLTAVGFKDTSDQVISGG-IDNDIKVWDLRKNDGLY-----------TLSGHADTITG  221 (338)
T ss_pred             -------------------cceeEEEEEecccccceeecc-ccCceeeeccccCcceE-----------EeecccCceee
Confidence                               234799999999999999855 89999999999888776           58899999999


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCC--CceEeeeece--eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDK--GPIQHFSGCR--IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD  355 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~  355 (512)
                      +..+++|.++.+-+.|.++++||++....  ..+..+.++.  .+.....++|+|+++.+.+|+.|..+++||...... 
T Consensus       222 lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~-  300 (338)
T KOG0265|consen  222 LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI-  300 (338)
T ss_pred             EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE-
Confidence            99999999999999999999999976543  2355555543  445566789999999999999999999999987665 


Q ss_pred             CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      +..+.||.+.|++++|+|.. .+|.+++.|.+|++=.
T Consensus       301 lyklpGh~gsvn~~~Fhp~e-~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  301 LYKLPGHYGSVNEVDFHPTE-PIILSCSSDKTIYLGE  336 (338)
T ss_pred             EEEcCCcceeEEEeeecCCC-cEEEEeccCceeEeec
Confidence            57899999999999999999 7999999999998743

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.7e-41  Score=269.22  Aligned_cols=281  Identities=17%  Similarity=0.309  Sum_probs=238.8

Q ss_pred             cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--ee
Q 010390           66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CT  143 (512)
Q Consensus        66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~  143 (512)
                      -+||+++.|-+|++|...++..             .++++...+.|+.+...|+++.||+++.- .|++||+++++  ++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C-------------~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv   76 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGIC-------------SRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPV   76 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeE-------------EEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCce
Confidence            4899999999999999988854             77777778899999999999999988754 59999998875  58


Q ss_pred             ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390          144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI  223 (512)
Q Consensus       144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (512)
                      .++.+|...|+++.|..++ +.+++|+.||+++|||++......                            ...+..+|
T Consensus        77 ~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR----------------------------~~~~~spV  127 (311)
T KOG0315|consen   77 ATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQR----------------------------NYQHNSPV  127 (311)
T ss_pred             eEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccch----------------------------hccCCCCc
Confidence            8999999999999999988 999999999999999999754332                            23556799


Q ss_pred             EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEc
Q 010390          224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV  303 (512)
Q Consensus       224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  303 (512)
                      +++..+|+...|++ |..+|.|++||+.+..+....          .......|.++...|||.+|+.+...|..++|++
T Consensus       128 n~vvlhpnQteLis-~dqsg~irvWDl~~~~c~~~l----------iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l  196 (311)
T KOG0315|consen  128 NTVVLHPNQTELIS-GDQSGNIRVWDLGENSCTHEL----------IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL  196 (311)
T ss_pred             ceEEecCCcceEEe-ecCCCcEEEEEccCCcccccc----------CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence            99999999999987 668999999999987655432          2233367999999999999999999999999998


Q ss_pred             ccCCC----CceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeE
Q 010390          304 LQLDK----GPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKI  379 (512)
Q Consensus       304 ~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l  379 (512)
                      .....    .++..+..|  +..+..+.+||++++||+++.|.+++||+.++.-.....+.+|...+..++||.|+ .+|
T Consensus       197 ~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg-~Yl  273 (311)
T KOG0315|consen  197 LNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG-EYL  273 (311)
T ss_pred             cCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCc-cEE
Confidence            65322    233334444  46788999999999999999999999999988744456789999999999999999 899


Q ss_pred             EEEeCCCcEEEEeCCCCccccccc
Q 010390          380 VTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       380 ~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      +||+.|+.+++|++..++.++...
T Consensus       274 vTassd~~~rlW~~~~~k~v~qy~  297 (311)
T KOG0315|consen  274 VTASSDHTARLWDLSAGKEVRQYQ  297 (311)
T ss_pred             EecCCCCceeecccccCceeeecC
Confidence            999999999999999999777533

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8e-42  Score=294.11  Aligned_cols=274  Identities=20%  Similarity=0.331  Sum_probs=241.6

Q ss_pred             ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCC-CCCeEEEEeCCCcEEEEeCCCC
Q 010390          105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT-NSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      .+...+|..+.|+.|++.|+||+.+|.++||+..+...+++|.+|...|.++.|+|. ....+++|+.||++++|++.+.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            356789999999999999999999999999999999999999999999999999998 4578999999999999999875


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      ..+.                           .+.+|...|..++|+|+|++|.+++ .|.+-++||+++.....      
T Consensus       252 ~~l~---------------------------~l~gH~~RVs~VafHPsG~~L~Tas-fD~tWRlWD~~tk~ElL------  297 (459)
T KOG0272|consen  252 TPLQ---------------------------DLEGHLARVSRVAFHPSGKFLGTAS-FDSTWRLWDLETKSELL------  297 (459)
T ss_pred             cchh---------------------------hhhcchhhheeeeecCCCceeeecc-cccchhhcccccchhhH------
Confidence            4433                           5678889999999999999999855 79999999999988776      


Q ss_pred             ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390          264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN  343 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  343 (512)
                           ..++|..+|.+++|.+||.++++|+.|..-+|||++++  ..+..+.+|.  ..|..++|+|+|..||+|+.|++
T Consensus       298 -----~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg--r~im~L~gH~--k~I~~V~fsPNGy~lATgs~Dnt  368 (459)
T KOG0272|consen  298 -----LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG--RCIMFLAGHI--KEILSVAFSPNGYHLATGSSDNT  368 (459)
T ss_pred             -----hhcccccccceeEecCCCceeeccCccchhheeecccC--cEEEEecccc--cceeeEeECCCceEEeecCCCCc
Confidence                 47899999999999999999999999999999999884  4566777754  55888999999999999999999


Q ss_pred             EEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccc
Q 010390          344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLF  423 (512)
Q Consensus       344 i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (512)
                      ++|||++.... ..++.+|..-|+.|.|+|+...+|+|++.|++++||.-.+.++++.+  ..+...|+++...+....+
T Consensus       369 ~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL--aGHe~kV~s~Dis~d~~~i  445 (459)
T KOG0272|consen  369 CKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL--AGHEGKVISLDISPDSQAI  445 (459)
T ss_pred             EEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh--cCCccceEEEEeccCCceE
Confidence            99999998877 68899999999999999965599999999999999999999988873  4455666666666555444


Q ss_pred             c
Q 010390          424 M  424 (512)
Q Consensus       424 ~  424 (512)
                      +
T Consensus       446 ~  446 (459)
T KOG0272|consen  446 A  446 (459)
T ss_pred             E
Confidence            3

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=4.4e-42  Score=300.79  Aligned_cols=297  Identities=21%  Similarity=0.410  Sum_probs=261.5

Q ss_pred             eeEeecCCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      .+...+.||+..|.++.|   .| .+.+|++|+.|+.|+||++...            ...++++.+|..+|.+++|+++
T Consensus       205 k~~~~~~gH~kgvsai~~---fp~~~hLlLS~gmD~~vklW~vy~~------------~~~lrtf~gH~k~Vrd~~~s~~  269 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQW---FPKKGHLLLSGGMDGLVKLWNVYDD------------RRCLRTFKGHRKPVRDASFNNC  269 (503)
T ss_pred             hheeeccCCccccchhhh---ccceeeEEEecCCCceEEEEEEecC------------cceehhhhcchhhhhhhhcccc
Confidence            456789999999999999   66 8899999999999999998753            3559999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      |..+++++.|+.|++||+++|+++..+. -...++|+.|+|++.+.|++|+.|+.|+.||+++++.+.            
T Consensus       270 g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq------------  336 (503)
T KOG0282|consen  270 GTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ------------  336 (503)
T ss_pred             CCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH------------
Confidence            9999999999999999999999999886 345789999999998999999999999999999876443            


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                     ....|-+.|..+.|.+++..++++. +|+.++||+.+..-....          ..........+
T Consensus       337 ---------------eYd~hLg~i~~i~F~~~g~rFissS-Ddks~riWe~~~~v~ik~----------i~~~~~hsmP~  390 (503)
T KOG0282|consen  337 ---------------EYDRHLGAILDITFVDEGRRFISSS-DDKSVRIWENRIPVPIKN----------IADPEMHTMPC  390 (503)
T ss_pred             ---------------HHHhhhhheeeeEEccCCceEeeec-cCccEEEEEcCCCccchh----------hcchhhccCcc
Confidence                           4446677999999999999999865 899999999987665543          23444466889


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCC-CCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLD-KGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      +..+|++.++++-+.|+.|.+|.+...- ......+.+|...++.+.+.|||||++|++|+.||.+.+||.++.+. ...
T Consensus       391 ~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-~~~  469 (503)
T KOG0282|consen  391 LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-VSK  469 (503)
T ss_pred             eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh-hhc
Confidence            9999999999999999999999975432 23456788999999999999999999999999999999999998776 578


Q ss_pred             eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      +.+|++++..+.|+|..+..+||++.||.|++|+
T Consensus       470 lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  470 LKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            8999999999999999989999999999999996

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=100.00  E-value=4.6e-40  Score=297.33  Aligned_cols=391  Identities=36%  Similarity=0.599  Sum_probs=300.8

Q ss_pred             CCCCCchhhhcccceeeecCcccccccccCCCCCC-ceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEE
Q 010390            1 MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTD-FTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSL   79 (512)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~i   79 (512)
                      |...+...++..+..+  .||..++.+........ ....+.--....|-.-+.++..|++......+||.+.+||.|.+
T Consensus         1 ~~~s~lr~~~h~~~~r--n~~~~r~~~~~~~~~~s~~gi~~~~s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l   78 (720)
T KOG0321|consen    1 MESSRLRDFLHGTGAR--NGRYLRYPMDIGKALSSCRGIAPITSYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIIL   78 (720)
T ss_pred             Ccchhhhhhhhhcccc--ccceeecchhHhhhhhhhcccccccccccCCCCCCCccccccCCCCccceEEEecCCCceee
Confidence            4556667777777765  78777777765543321 11111111122233344567888776556679999999999999


Q ss_pred             EECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec--ccCcCCCEEEEE
Q 010390           80 FDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA--LMGHTGSIKSLC  157 (512)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~  157 (512)
                      +|.......       .+...+..+..|.+.|..+.|-|....|++++.|.++++||+++.+++..  +.+|.+.|.+++
T Consensus        79 ~dt~~~~fr-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~c  151 (720)
T KOG0321|consen   79 FDTKSIVFR-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSEC  151 (720)
T ss_pred             ecchhhhcc-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhh
Confidence            998754321       23445677889999999999999778899999999999999999998877  889999999999


Q ss_pred             eeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE---EEEeecCCE
Q 010390          158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS---VLYLKDEVS  234 (512)
Q Consensus       158 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~  234 (512)
                      |.|.+...|++|+.||.|.|||++.............+............+..+......++...|.+   +.+..|...
T Consensus       152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t  231 (720)
T KOG0321|consen  152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST  231 (720)
T ss_pred             hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence            99999999999999999999999866522211111111111000012333445556667778888887   788889999


Q ss_pred             EEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee
Q 010390          235 IATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF  314 (512)
Q Consensus       235 l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  314 (512)
                      |+++|..|+.|++||++........................++.++..+..|.+|++.+.|+.|+.||+......++..+
T Consensus       232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~  311 (720)
T KOG0321|consen  232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF  311 (720)
T ss_pred             eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc
Confidence            99999889999999999987766554433322222233456789999999999999999999999999999999999999


Q ss_pred             eeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          315 SGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       315 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      .++....+...-..+|++.+|++|+.|...++|.+.+.+.....+.+|.-.|++++|.|....-++++++|..++||++.
T Consensus       312 sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  312 SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence            99988888888899999999999999999999999999988889999999999999998765679999999999999997


Q ss_pred             CCcccc
Q 010390          395 NSRCSS  400 (512)
Q Consensus       395 ~~~~~~  400 (512)
                      ++-+..
T Consensus       392 ~~l~e~  397 (720)
T KOG0321|consen  392 NGLEEI  397 (720)
T ss_pred             Cchhhc
Confidence            765443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-40  Score=284.42  Aligned_cols=296  Identities=19%  Similarity=0.310  Sum_probs=251.5

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      ..++.|++.|.-+.|   |++|+|||+++.|.+..||++....          ..+...++.+|..+|..+.||||.++|
T Consensus       218 qil~~htdEVWfl~F---S~nGkyLAsaSkD~Taiiw~v~~d~----------~~kl~~tlvgh~~~V~yi~wSPDdryL  284 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQF---SHNGKYLASASKDSTAIIWIVVYDV----------HFKLKKTLVGHSQPVSYIMWSPDDRYL  284 (519)
T ss_pred             hhHhhCCCcEEEEEE---cCCCeeEeeccCCceEEEEEEecCc----------ceeeeeeeecccCceEEEEECCCCCeE
Confidence            346678888887777   9999999999999999999976442          235578899999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      ++|+.|..+.+||+.+|.+...+. ++...+.+.+|.|++ ..+++|+.|+.+..||+.......-.             
T Consensus       285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~-------------  350 (519)
T KOG0293|consen  285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWE-------------  350 (519)
T ss_pred             EecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhccc-------------
Confidence            999999999999999999887774 345789999999998 88999999999999999754321100             


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ  282 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (512)
                               .     .....|.+++..+||+.+++.+ .|..|++++..+.....            ......+|+++.+
T Consensus       351 ---------g-----vr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~------------lise~~~its~~i  403 (519)
T KOG0293|consen  351 ---------G-----VRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRG------------LISEEQPITSFSI  403 (519)
T ss_pred             ---------c-----cccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhc------------cccccCceeEEEE
Confidence                     0     0123699999999999999877 79999999988654431            2334467999999


Q ss_pred             CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceecc
Q 010390          283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLKS  361 (512)
Q Consensus       283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~  361 (512)
                      +.+++++++.-.+..|++||+.  +...+..+.++....++..-+|.-. ..++++|++|+.|+||+..+++. +..+.|
T Consensus       404 S~d~k~~LvnL~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl-l~~LsG  480 (519)
T KOG0293|consen  404 SKDGKLALVNLQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL-LAVLSG  480 (519)
T ss_pred             cCCCcEEEEEcccCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce-eEeecC
Confidence            9999999999999999999997  4667788889988888888898764 48999999999999999998876 689999


Q ss_pred             ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          362 HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       362 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      |...|++|+|+|..+.++|++|+||+||||.....
T Consensus       481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             CcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            99999999999999999999999999999987643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.4e-41  Score=288.23  Aligned_cols=284  Identities=20%  Similarity=0.344  Sum_probs=242.1

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      -+.+|..|.|   .|+|+.|++|+..|.+.||+...-..             ...+++|..+|+++.|++++.++++|+.
T Consensus        95 vkc~V~~v~W---tPeGRRLltgs~SGEFtLWNg~~fnF-------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~  158 (464)
T KOG0284|consen   95 VKCPVNVVRW---TPEGRRLLTGSQSGEFTLWNGTSFNF-------------ETILQAHDSPVRTMKWSHNGTWMISGDK  158 (464)
T ss_pred             cccceeeEEE---cCCCceeEeecccccEEEecCceeeH-------------HHHhhhhcccceeEEEccCCCEEEEcCC
Confidence            3557888888   99999999999999999999743211             3346799999999999999999999999


Q ss_pred             CCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          129 DQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      +|.|++|+..-. .+..++.|. ..|.+++|+|.+ ..|++++.||+|+|||.......                     
T Consensus       159 gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee---------------------  215 (464)
T KOG0284|consen  159 GGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEE---------------------  215 (464)
T ss_pred             CceEEecccchh-hhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchh---------------------
Confidence            999999997544 445555555 899999999977 89999999999999998855432                     


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV  287 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (512)
                            +.+.+|.-.|.+++|+|....+++ |+.|..|++||.+++.++.           .+..|+..|..+.|+++++
T Consensus       216 ------~vL~GHgwdVksvdWHP~kgLias-gskDnlVKlWDprSg~cl~-----------tlh~HKntVl~~~f~~n~N  277 (464)
T KOG0284|consen  216 ------RVLRGHGWDVKSVDWHPTKGLIAS-GSKDNLVKLWDPRSGSCLA-----------TLHGHKNTVLAVKFNPNGN  277 (464)
T ss_pred             ------heeccCCCCcceeccCCccceeEE-ccCCceeEeecCCCcchhh-----------hhhhccceEEEEEEcCCCC
Confidence                  245688999999999999888877 5588999999999999987           5788999999999999999


Q ss_pred             EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceeccccCCe
Q 010390          288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEV  366 (512)
Q Consensus       288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v  366 (512)
                      +|++++.|..++++|++.  .+.++.+.+|.  ..++++.|+|- ..+|.+|+.||.|..|.+...+.....-.+|+..|
T Consensus       278 ~Llt~skD~~~kv~DiR~--mkEl~~~r~Hk--kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~i  353 (464)
T KOG0284|consen  278 WLLTGSKDQSCKVFDIRT--MKELFTYRGHK--KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEI  353 (464)
T ss_pred             eeEEccCCceEEEEehhH--hHHHHHhhcch--hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccce
Confidence            999999999999999984  34455666664  45788999996 56788999999999999986666556678999999


Q ss_pred             EEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          367 TAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       367 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      ++++|+|-| .+|++|+.|.++++|.-.
T Consensus       354 wsl~~hPlG-hil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  354 WSLAYHPLG-HILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eeeeccccc-eeEeecCCCcceeeeccC
Confidence            999999999 999999999999999753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.8e-39  Score=259.94  Aligned_cols=296  Identities=19%  Similarity=0.306  Sum_probs=237.5

Q ss_pred             eeEeecCCccCCcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceecc-ccCCCcEEEEEEec
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-VAHQNAIFDLCWIK  118 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s~  118 (512)
                      .+...++||++.+..++|   +|- |..||+|+.|..|+||+...+.. .         .....+ .+|+..|++++|+|
T Consensus         5 ~~~~~~~gh~~r~W~~aw---hp~~g~ilAscg~Dk~vriw~~~~~~s-~---------~ck~vld~~hkrsVRsvAwsp   71 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAW---HPGKGVILASCGTDKAVRIWSTSSGDS-W---------TCKTVLDDGHKRSVRSVAWSP   71 (312)
T ss_pred             eeEEeecCCCCcEEEEEe---ccCCceEEEeecCCceEEEEecCCCCc-E---------EEEEeccccchheeeeeeecC
Confidence            346778999999999999   887 88999999999999999875221 1         112122 48999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          119 EDTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      .|++|++|+.|.++.||.-..+  +++.++.+|...|.|++|+++| ++||+++.|..|-||.+.....           
T Consensus        72 ~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddE-----------  139 (312)
T KOG0645|consen   72 HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDE-----------  139 (312)
T ss_pred             CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCc-----------
Confidence            9999999999999999986644  7899999999999999999998 9999999999999999875432           


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCcccccccccccc
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                   ......+..|...|..+.|+|....|++++ .|.+|++|+-.. ..-...+         .+.+|..
T Consensus       140 -------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~S-YDnTIk~~~~~~dddW~c~~---------tl~g~~~  196 (312)
T KOG0645|consen  140 -------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCS-YDNTIKVYRDEDDDDWECVQ---------TLDGHEN  196 (312)
T ss_pred             -------------EEEEeeeccccccccEEEEcCCcceeEEec-cCCeEEEEeecCCCCeeEEE---------EecCccc
Confidence                         233446778899999999999998888855 799999998773 2222221         5777888


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC-C
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ-A  354 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~-~  354 (512)
                      .|.+++|++.|..|++++.|++++||-....       +. ......+..+.|.  ...|++++.|+.|++|.-...- .
T Consensus       197 TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~  266 (312)
T KOG0645|consen  197 TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE  266 (312)
T ss_pred             eEEEEEecCCCceEEEecCCcceEeeeeccC-------cc-hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCC
Confidence            9999999999999999999999999986421       11 1112234557777  5689999999999999876431 1


Q ss_pred             -----CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          355 -----DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       355 -----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                           ....-..|+..|++++|.|....+|++|++||.|++|.+.
T Consensus       267 p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  267 PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             chHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence                 1123457889999999999756899999999999999875

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.7e-38  Score=279.64  Aligned_cols=339  Identities=22%  Similarity=0.360  Sum_probs=256.8

Q ss_pred             ccccccCCCCCCceeee-------eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccc
Q 010390           24 RKRPYFGDVVTDFTEIG-------AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENA   96 (512)
Q Consensus        24 ~~~~~~~~~~~~~~~~~-------~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~   96 (512)
                      +-|||..-..+++....       .+....+.|..-|+||.|   +|||.++|+.+.||.|.|||-.+++.         
T Consensus       157 psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy---sPDG~~Fat~gsDgki~iyDGktge~---------  224 (603)
T KOG0318|consen  157 PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY---SPDGSRFATAGSDGKIYIYDGKTGEK---------  224 (603)
T ss_pred             CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE---CCCCCeEEEecCCccEEEEcCCCccE---------
Confidence            46777666555433322       233456679999999999   99999999999999999999887754         


Q ss_pred             cccceecc---ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee------------------------------
Q 010390           97 EKARISDW---VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT------------------------------  143 (512)
Q Consensus        97 ~~~~~~~~---~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------------  143 (512)
                          +..+   .+|++.|++++|+||+..++|++.|.+++|||+.+.+++                              
T Consensus       225 ----vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G  300 (603)
T KOG0318|consen  225 ----VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSG  300 (603)
T ss_pred             ----EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCc
Confidence                4444   499999999999999999999999999999999876532                              


Q ss_pred             -------------ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc----cc--------c-ceeee
Q 010390          144 -------------GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN----CA--------E-SFVFS  197 (512)
Q Consensus       144 -------------~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~--------~-~~~~~  197 (512)
                                   ..+.+|...|+++..+|++ .+|++|+.||.|.-|+...+..-...    ..        + ..++.
T Consensus       301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t  379 (603)
T KOG0318|consen  301 TINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT  379 (603)
T ss_pred             EEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence                         3446799999999999998 99999999999999999876544221    00        0 00110


Q ss_pred             ccc--------------cccc--ccc---------c--------cccccee--------cccccccEEEEEEeecCCEEE
Q 010390          198 SAV--------------VKGA--HLL---------S--------QSKRVSR--------RKAASMSITSVLYLKDEVSIA  236 (512)
Q Consensus       198 ~~~--------------~~~~--~~~---------~--------~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~  236 (512)
                      ...              ....  .+.         .        ....+..        ...-.-...+++++|++..++
T Consensus       380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va  459 (603)
T KOG0318|consen  380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA  459 (603)
T ss_pred             EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence            000              0000  000         0        0000000        111233567899999999988


Q ss_pred             EEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee
Q 010390          237 TASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG  316 (512)
Q Consensus       237 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  316 (512)
                      + |++|+.|++|.+.........         ....|..+|++++++||+.+|+++...+.+.+||+.+.+.. .....-
T Consensus       460 V-GG~Dgkvhvysl~g~~l~ee~---------~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~-~~~w~F  528 (603)
T KOG0318|consen  460 V-GGQDGKVHVYSLSGDELKEEA---------KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK-TNRWAF  528 (603)
T ss_pred             E-ecccceEEEEEecCCccccee---------eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee-cceeee
Confidence            8 559999999999876643322         46778899999999999999999999999999999765441 111111


Q ss_pred             ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          317 CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       317 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                        +...+.+++|+|+..++|+|+-|-.|.||++..+...+....+|...|+.+.|-.+  ..+++.+.|..|++|++.
T Consensus       529 --HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde--~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  529 --HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE--STVVSSGQDANIKVWNVT  602 (603)
T ss_pred             --eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecC--ceEEeccCcceeEEeccc
Confidence              34568899999999999999999999999999988776777899989999999876  589999999999999974

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.3e-38  Score=251.43  Aligned_cols=281  Identities=17%  Similarity=0.275  Sum_probs=233.5

Q ss_pred             eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390           39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK  118 (512)
Q Consensus        39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~  118 (512)
                      .|......+--...|+++..   .||++.||+++. ..|++||+++..+           .++.++.+|...|+++.|..
T Consensus        29 tG~C~rTiqh~dsqVNrLei---Tpdk~~LAaa~~-qhvRlyD~~S~np-----------~Pv~t~e~h~kNVtaVgF~~   93 (311)
T KOG0315|consen   29 TGICSRTIQHPDSQVNRLEI---TPDKKDLAAAGN-QHVRLYDLNSNNP-----------NPVATFEGHTKNVTAVGFQC   93 (311)
T ss_pred             cCeEEEEEecCccceeeEEE---cCCcchhhhccC-CeeEEEEccCCCC-----------CceeEEeccCCceEEEEEee
Confidence            35566666656678999999   999999999985 4799999998754           46899999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      +|+++++|++||+++|||++...+.+.++ |..+|+++..+|.. ..|++|..+|.|++||+.+.........       
T Consensus        94 dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liP-------  164 (311)
T KOG0315|consen   94 DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIP-------  164 (311)
T ss_pred             cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCC-------
Confidence            99999999999999999999987777776 77999999999987 8899999999999999987755443222       


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                         .....|.++...|+|..++++. ..|..++|++-+......+..     ...+..|..-+.
T Consensus       165 -------------------e~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P-----~~k~~ah~~~il  219 (311)
T KOG0315|consen  165 -------------------EDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEP-----VHKFQAHNGHIL  219 (311)
T ss_pred             -------------------CCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceE-----hhheecccceEE
Confidence                               2235799999999999998855 789999999987443332222     225788999999


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      .+.++||+++|++++.|.+++||+..+. ......+.++.  .++..++||.|++||++|+.|+.+++|++..++. ...
T Consensus       220 ~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~--rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~-v~q  295 (311)
T KOG0315|consen  220 RCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQ--RWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE-VRQ  295 (311)
T ss_pred             EEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCC--ceEEeeeeccCccEEEecCCCCceeecccccCce-eee
Confidence            9999999999999999999999998765 33444455553  6788999999999999999999999999999887 467


Q ss_pred             eccccCCeEEEEeC
Q 010390          359 LKSHDGEVTAVNWC  372 (512)
Q Consensus       359 ~~~h~~~v~~v~~~  372 (512)
                      +.+|.....|++..
T Consensus       296 y~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  296 YQGHHKAAVCVALN  309 (311)
T ss_pred             cCCcccccEEEEee
Confidence            88888777777653

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.5e-37  Score=273.59  Aligned_cols=336  Identities=17%  Similarity=0.228  Sum_probs=260.1

Q ss_pred             eEeecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      -.-++.||...|++++|   -|... +++||+.|+.|.+|+-             ++.+-..++..|..-|+++.|+|||
T Consensus       139 SvGei~GhSr~ins~~~---KpsRPfRi~T~sdDn~v~ffeG-------------PPFKFk~s~r~HskFV~~VRysPDG  202 (603)
T KOG0318|consen  139 SVGEITGHSRRINSVDF---KPSRPFRIATGSDDNTVAFFEG-------------PPFKFKSSFREHSKFVNCVRYSPDG  202 (603)
T ss_pred             ccceeeccceeEeeeec---cCCCceEEEeccCCCeEEEeeC-------------CCeeeeecccccccceeeEEECCCC
Confidence            34477899999999999   66655 7999999999999974             2234467788999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeeccc---CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee--
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALM---GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV--  195 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--  195 (512)
                      .++++++.||+|.+||-.+++.+..+.   +|++.|.+++|+||+ ..|++++.|.+++|||+.+..+.........+  
T Consensus       203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d  281 (603)
T KOG0318|consen  203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED  281 (603)
T ss_pred             CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence            999999999999999999999999987   899999999999998 89999999999999999988765543322111  


Q ss_pred             ------------eecccc--cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390          196 ------------FSSAVV--KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       196 ------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~  261 (512)
                                  ......  ..............+.+|...|+++..++++.++++ |+.||.|.-||..++..-.....
T Consensus       282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S-gsyDG~I~~W~~~~g~~~~~~g~  360 (603)
T KOG0318|consen  282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS-GSYDGHINSWDSGSGTSDRLAGK  360 (603)
T ss_pred             eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe-eccCceEEEEecCCccccccccc
Confidence                        000000  001111222345678899999999999999988887 66899999999886543321100


Q ss_pred             CCc-------------------------------------------ccc-------------------cccc--------
Q 010390          262 PHA-------------------------------------------ESS-------------------SAKE--------  271 (512)
Q Consensus       262 ~~~-------------------------------------------~~~-------------------~~~~--------  271 (512)
                      .+.                                           .+.                   ..+.        
T Consensus       361 ~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~  440 (603)
T KOG0318|consen  361 GHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSI  440 (603)
T ss_pred             cccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceee
Confidence            000                                           000                   0000        


Q ss_pred             ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390          272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK  351 (512)
Q Consensus       272 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~  351 (512)
                      .......+++++|++..+++|+.|+.|++|.+............  .+...++.++||||+.+||+|...+.+.+||+.+
T Consensus       441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~--~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s  518 (603)
T KOG0318|consen  441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL--EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS  518 (603)
T ss_pred             ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee--cccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence            01123567899999999999999999999999775543332333  3346688999999999999999999999999998


Q ss_pred             CCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          352 PQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       352 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      .+.......-|...|.+++|+|+. .++|||+-|-.|.||+++....
T Consensus       519 ~~~~~~~w~FHtakI~~~aWsP~n-~~vATGSlDt~Viiysv~kP~~  564 (603)
T KOG0318|consen  519 REVKTNRWAFHTAKINCVAWSPNN-KLVATGSLDTNVIIYSVKKPAK  564 (603)
T ss_pred             CceecceeeeeeeeEEEEEeCCCc-eEEEeccccceEEEEEccChhh
Confidence            877555566699999999999999 8999999999999999987543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-38  Score=256.01  Aligned_cols=259  Identities=19%  Similarity=0.274  Sum_probs=215.5

Q ss_pred             CCceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEE
Q 010390           34 TDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFD  113 (512)
Q Consensus        34 ~~~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  113 (512)
                      .++.+.|.....+.||...|..+..   ++||++.++++.|+.+++||+.+++.             .+.|.+|...|.+
T Consensus        47 ~dd~~~G~~~r~~~GHsH~v~dv~~---s~dg~~alS~swD~~lrlWDl~~g~~-------------t~~f~GH~~dVls  110 (315)
T KOG0279|consen   47 SDDIKYGVPVRRLTGHSHFVSDVVL---SSDGNFALSASWDGTLRLWDLATGES-------------TRRFVGHTKDVLS  110 (315)
T ss_pred             cCccccCceeeeeeccceEecceEE---ccCCceEEeccccceEEEEEecCCcE-------------EEEEEecCCceEE
Confidence            3578889999999999999999999   99999999999999999999988744             7789999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCc--CCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390          114 LCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGH--TGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNC  190 (512)
Q Consensus       114 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~  190 (512)
                      ++|++|.++|++|+.|.+|++||+... +..++..+  .+.|.|+.|+|.. ..+|++++.|++|++||+++.+...   
T Consensus       111 va~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~---  186 (315)
T KOG0279|consen  111 VAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT---  186 (315)
T ss_pred             EEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh---
Confidence            999999999999999999999997654 44444333  7899999999984 4799999999999999999766544   


Q ss_pred             ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390          191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                                              .+.+|.+.++.++++|||...++ |+.||.+.+||++.++...            .
T Consensus       187 ------------------------~~~gh~~~v~t~~vSpDGslcas-Ggkdg~~~LwdL~~~k~ly------------s  229 (315)
T KOG0279|consen  187 ------------------------TFIGHSGYVNTVTVSPDGSLCAS-GGKDGEAMLWDLNEGKNLY------------S  229 (315)
T ss_pred             ------------------------ccccccccEEEEEECCCCCEEec-CCCCceEEEEEccCCceeE------------e
Confidence                                    44578899999999999998887 6699999999999998864            4


Q ss_pred             cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece-----eceeEEEEEECCCCCEEEEecCCCCEE
Q 010390          271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-----IESFYVKSEICPNASHILSGSSDGNAY  345 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~g~~dg~i~  345 (512)
                      ..+...|.+++|+|+...|+.+ .+..|+|||+...............     .......++|+++|..|++|..|+.|+
T Consensus       230 l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ir  308 (315)
T KOG0279|consen  230 LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIR  308 (315)
T ss_pred             ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEE
Confidence            5666789999999997766665 4556999998664322211211111     134567799999999999999999999


Q ss_pred             EEecC
Q 010390          346 VWQVN  350 (512)
Q Consensus       346 iw~~~  350 (512)
                      +|.+.
T Consensus       309 v~qv~  313 (315)
T KOG0279|consen  309 VWQVA  313 (315)
T ss_pred             EEEee
Confidence            99875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-38  Score=268.18  Aligned_cols=291  Identities=21%  Similarity=0.343  Sum_probs=257.0

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .+...+.||..+|..|-|   +|+-.++++++.|++|++||..+++.             ...+++|.+.|.+|+|+..|
T Consensus        99 ~l~~~l~g~r~~vt~v~~---hp~~~~v~~as~d~tikv~D~~tg~~-------------e~~LrGHt~sv~di~~~a~G  162 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIF---HPSEALVVSASEDATIKVFDTETGEL-------------ERSLRGHTDSVFDISFDASG  162 (406)
T ss_pred             Cchhhhhccccceeeeee---ccCceEEEEecCCceEEEEEccchhh-------------hhhhhccccceeEEEEecCc
Confidence            344556788888888888   99999999999999999999988743             77899999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCC-CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          121 TNILTASGDQTIKIWDAEK-KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      ++|++++.|=.+++||.++ .+++..+.+|...|.+++|-|.+ .++++++.|.+|+.|++.++.++.            
T Consensus       163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~------------  229 (406)
T KOG0295|consen  163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVK------------  229 (406)
T ss_pred             cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEE------------
Confidence            9999999999999999987 57888899999999999999998 999999999999999999876554            


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                     .+.+|...|..+..+.||..+++ ++.|.+|++|-+.+.++..           .+..|..+|.+
T Consensus       230 ---------------t~~~h~ewvr~v~v~~DGti~As-~s~dqtl~vW~~~t~~~k~-----------~lR~hEh~vEc  282 (406)
T KOG0295|consen  230 ---------------TFPGHSEWVRMVRVNQDGTIIAS-CSNDQTLRVWVVATKQCKA-----------ELREHEHPVEC  282 (406)
T ss_pred             ---------------eccCchHhEEEEEecCCeeEEEe-cCCCceEEEEEeccchhhh-----------hhhccccceEE
Confidence                           56678889999999999988887 5589999999999987665           57888899999


Q ss_pred             EEeCCC---------------CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390          280 LSQDSN---------------GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA  344 (512)
Q Consensus       280 ~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  344 (512)
                      ++|.|.               ++++.+++.|++|++||+..+  ..+.++.+|.  ..+..++|+|.|+||+++.+|+++
T Consensus       283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg--~cL~tL~ghd--nwVr~~af~p~Gkyi~ScaDDktl  358 (406)
T KOG0295|consen  283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG--MCLFTLVGHD--NWVRGVAFSPGGKYILSCADDKTL  358 (406)
T ss_pred             EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--eEEEEEeccc--ceeeeeEEcCCCeEEEEEecCCcE
Confidence            999763               369999999999999999763  5677777764  678999999999999999999999


Q ss_pred             EEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          345 YVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       345 ~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      ++||+++.++. ..+..|+.-|++++|+.+. -+++||+-|.++++|.-
T Consensus       359 rvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~-p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  359 RVWDLKNLQCM-KTLEAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEEeccceee-eccCCCcceeEEEecCCCC-ceEEeccccceeeeeec
Confidence            99999998884 6777999999999999998 69999999999999963

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.1e-38  Score=289.45  Aligned_cols=338  Identities=18%  Similarity=0.297  Sum_probs=276.3

Q ss_pred             eeeeEeecCCccCCcceEEEEEecCCCc--EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390           39 IGAVTVEHHGEETPPLAVSFCKTSKNSH--IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW  116 (512)
Q Consensus        39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~--~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  116 (512)
                      .+..+..++||.+.|.++.|   +|+-+  +|++|..|+.|++||+++...            .+..+..|.+.|++++|
T Consensus       136 ~~~~th~fkG~gGvVssl~F---~~~~~~~lL~sg~~D~~v~vwnl~~~~t------------cl~~~~~H~S~vtsL~~  200 (775)
T KOG0319|consen  136 NGYCTHSFKGHGGVVSSLLF---HPHWNRWLLASGATDGTVRVWNLNDKRT------------CLHTMILHKSAVTSLAF  200 (775)
T ss_pred             CCEEEEEecCCCceEEEEEe---CCccchhheeecCCCceEEEEEcccCch------------HHHHHHhhhhheeeeee
Confidence            35677889999999999999   66554  699999999999999986532            37778999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCe-------------------------------------------------------
Q 010390          117 IKEDTNILTASGDQTIKIWDAEKKK-------------------------------------------------------  141 (512)
Q Consensus       117 s~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------------------------------  141 (512)
                      ++|+..+++++.|..+.|||+.+.+                                                       
T Consensus       201 ~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~  280 (775)
T KOG0319|consen  201 SEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD  280 (775)
T ss_pred             ccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC
Confidence            9999999999999999999985422                                                       


Q ss_pred             ----------------------------------------------------------------------------eeec
Q 010390          142 ----------------------------------------------------------------------------CTGA  145 (512)
Q Consensus       142 ----------------------------------------------------------------------------~~~~  145 (512)
                                                                                                  .-..
T Consensus       281 ~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~i  360 (775)
T KOG0319|consen  281 SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQI  360 (775)
T ss_pred             chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEE
Confidence                                                                                        0013


Q ss_pred             ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      +.+|...|.++....+| .+|++|+.|.++++|.++++....                       .......+|...|.+
T Consensus       361 i~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~-----------------------~~~a~~~gH~~svga  416 (775)
T KOG0319|consen  361 IPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKS-----------------------LCVAQANGHTNSVGA  416 (775)
T ss_pred             EeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchh-----------------------hhhhhhcccccccce
Confidence            35688888888855555 799999999999999985443322                       122345689999999


Q ss_pred             EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                      ++++..+..++++++.|+++++|++...+....  ............|...|++++++|+.+++++|+.|.+.++|++. 
T Consensus       417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-  493 (775)
T KOG0319|consen  417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-  493 (775)
T ss_pred             eeecccCccEEEEecCCceEEEecCCCcccccc--cceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-
Confidence            999998888888899999999999987322211  11111112456788999999999999999999999999999997 


Q ss_pred             CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390          306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD  385 (512)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  385 (512)
                       +......+.+|.  ..+.++.|++..+.+++++.|++|+||.+.+..+ ..++.||+..|..+.|-.++ ..|+|++.|
T Consensus       494 -~~~l~~vLsGH~--RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC-lkT~eGH~~aVlra~F~~~~-~qliS~~ad  568 (775)
T KOG0319|consen  494 -QLRLLGVLSGHT--RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC-LKTFEGHTSAVLRASFIRNG-KQLISAGAD  568 (775)
T ss_pred             -CceEEEEeeCCc--cceEEEEeccccceeEeccCCceEEEEEecccee-eeeecCccceeEeeeeeeCC-cEEEeccCC
Confidence             456677788876  4478899999999999999999999999999887 58999999999999999999 899999999


Q ss_pred             CcEEEEeCCCCcccccccCccccceeeeeccchhcccccC
Q 010390          386 YTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMN  425 (512)
Q Consensus       386 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (512)
                      |.|++|++.+++|+.++  ..+..++|.+...+....+.+
T Consensus       569 GliKlWnikt~eC~~tl--D~H~DrvWaL~~~~~~~~~~t  606 (775)
T KOG0319|consen  569 GLIKLWNIKTNECEMTL--DAHNDRVWALSVSPLLDMFVT  606 (775)
T ss_pred             CcEEEEeccchhhhhhh--hhccceeEEEeecCccceeEe
Confidence            99999999999999984  456678888877777665553

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.9e-38  Score=264.27  Aligned_cols=293  Identities=19%  Similarity=0.333  Sum_probs=250.1

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .++..+.||.+.|.||++   .|...+||+|+.|++|+|||+.+++             +..++.+|...|..+++|+..
T Consensus       142 Kl~rVi~gHlgWVr~vav---dP~n~wf~tgs~DrtikIwDlatg~-------------LkltltGhi~~vr~vavS~rH  205 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAV---DPGNEWFATGSADRTIKIWDLATGQ-------------LKLTLTGHIETVRGVAVSKRH  205 (460)
T ss_pred             eehhhhhhccceEEEEee---CCCceeEEecCCCceeEEEEcccCe-------------EEEeecchhheeeeeeecccC
Confidence            456678899999999999   9999999999999999999998874             477889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      .||++++.|+.|+.||++..+.++.+.+|-..|.|++.+|.. ..|++|+.|.++++||+++...               
T Consensus       206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~---------------  269 (460)
T KOG0285|consen  206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRAS---------------  269 (460)
T ss_pred             ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccce---------------
Confidence            999999999999999999999999999999999999999988 8999999999999999997543               


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                  +..+.+|..+|.++.+.|.+..+++ |+.|++|++||++.++...           ....|...+.++
T Consensus       270 ------------V~~l~GH~~~V~~V~~~~~dpqvit-~S~D~tvrlWDl~agkt~~-----------tlt~hkksvral  325 (460)
T KOG0285|consen  270 ------------VHVLSGHTNPVASVMCQPTDPQVIT-GSHDSTVRLWDLRAGKTMI-----------TLTHHKKSVRAL  325 (460)
T ss_pred             ------------EEEecCCCCcceeEEeecCCCceEE-ecCCceEEEeeeccCceeE-----------eeecccceeeEE
Confidence                        3367789999999999999999987 6689999999999998776           477888899999


Q ss_pred             EeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce--
Q 010390          281 SQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK--  358 (512)
Q Consensus       281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~--  358 (512)
                      +.+|....+++++.| .|+-|++..+.  .+..+.++  ...+.+++...| .++++|+++|.+.+||.+++......  
T Consensus       326 ~lhP~e~~fASas~d-nik~w~~p~g~--f~~nlsgh--~~iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t  399 (460)
T KOG0285|consen  326 CLHPKENLFASASPD-NIKQWKLPEGE--FLQNLSGH--NAIINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQT  399 (460)
T ss_pred             ecCCchhhhhccCCc-cceeccCCccc--hhhccccc--cceeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccc
Confidence            999999999998877 68999986532  33334444  345666777665 47889999999999999987542211  


Q ss_pred             e--c---cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          359 L--K---SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       359 ~--~---~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      .  .   ..+..|.+.+|...+ ..|++|..|.+|++|.-+..
T Consensus       400 ~vqpGSl~sEagI~as~fDktg-~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  400 IVQPGSLESEAGIFASCFDKTG-SRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             cccCCccccccceeEEeecccC-ceEEeccCCcceEEEecccc
Confidence            1  1   135679999999999 89999999999999986543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.7e-37  Score=260.08  Aligned_cols=301  Identities=17%  Similarity=0.223  Sum_probs=246.5

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .-+..+..|+++|++|+.   +|+.+++|||+.|..-.||++.++..             ...+.+|+..|+++.|+.+|
T Consensus        55 dS~~tF~~H~~svFavsl---~P~~~l~aTGGgDD~AflW~~~~ge~-------------~~eltgHKDSVt~~~Fshdg  118 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSL---HPNNNLVATGGGDDLAFLWDISTGEF-------------AGELTGHKDSVTCCSFSHDG  118 (399)
T ss_pred             cceeehhhcCCceEEEEe---CCCCceEEecCCCceEEEEEccCCcc-------------eeEecCCCCceEEEEEccCc
Confidence            346678899999999999   99999999999999999999988753             77889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      .+||||+.+|.|+||+..++.....+...-..+.=+.|+|.. .+|++|+.||.+.+|.+.+....              
T Consensus       119 tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~--------------  183 (399)
T KOG0296|consen  119 TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALC--------------  183 (399)
T ss_pred             eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCccee--------------
Confidence            999999999999999999999888887666788889999977 99999999999999999864222              


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc---------------
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE---------------  265 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---------------  265 (512)
                                   ..+.+|..++++=.|.|+|+.+++ +..||+|++|+..+++...........               
T Consensus       184 -------------kv~~Gh~~~ct~G~f~pdGKr~~t-gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~  249 (399)
T KOG0296|consen  184 -------------KVMSGHNSPCTCGEFIPDGKRILT-GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT  249 (399)
T ss_pred             -------------eEecCCCCCcccccccCCCceEEE-EecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence                         245678899999999999999998 668999999999998876654311000               


Q ss_pred             -------------------------ccccccccccC---eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec
Q 010390          266 -------------------------SSSAKETRLHG---ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC  317 (512)
Q Consensus       266 -------------------------~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  317 (512)
                                               .......+...   |.++.++..-.+.++|+.||+|.|||+.....+   ..-.|
T Consensus       250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R---~~c~h  326 (399)
T KOG0296|consen  250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR---HICEH  326 (399)
T ss_pred             eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh---eeccC
Confidence                                     00001122222   333444445567899999999999998653322   22222


Q ss_pred             eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          318 RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       318 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                        +..++++.|-+ ..+|++++.+|.|+.||.++++. ...+.+|...|.+++++|+. ++++|+|.|++.+|+++.
T Consensus       327 --e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l-~~~y~GH~~~Il~f~ls~~~-~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  327 --EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL-KFTYTGHQMGILDFALSPQK-RLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             --CCceEEEEEcC-cchheeeccCceEEeeeccccce-EEEEecCchheeEEEEcCCC-cEEEEecCCCeEEEEecC
Confidence              34488899998 78999999999999999999987 58899999999999999999 899999999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.3e-37  Score=289.10  Aligned_cols=255  Identities=14%  Similarity=0.261  Sum_probs=217.6

Q ss_pred             eEEEEEecCCCcEEEEeeCCCcEEEEECCCCC--C------cccc----------ccccccccceeccccCCCcEEEEEE
Q 010390           55 AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKL--P------SFAC----------HRENAEKARISDWVAHQNAIFDLCW  116 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~--~------~~~~----------~~~~~~~~~~~~~~~h~~~V~~l~~  116 (512)
                      .+.++.|++|+.+||.|..|..|++|.+....  .      ....          .....+.....++.+|.++|+.+.|
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF  459 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF  459 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence            34444449999999999999999999987421  0      0000          0011223345668899999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          117 IKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       117 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      +|+.++|++++.|++|++|.+.+..++..+++|..+|+.+.|+|.| .+|||++.|++-++|......            
T Consensus       460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~------------  526 (707)
T KOG0263|consen  460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK------------  526 (707)
T ss_pred             cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC------------
Confidence            9999999999999999999999999999999999999999999998 999999999999999987533            


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                     ..+.+.+|.+.|.|+.|+|+..++++ |+.|.+|++||+.++..+.           .+.+|..+
T Consensus       527 ---------------PlRifaghlsDV~cv~FHPNs~Y~aT-GSsD~tVRlWDv~~G~~VR-----------iF~GH~~~  579 (707)
T KOG0263|consen  527 ---------------PLRIFAGHLSDVDCVSFHPNSNYVAT-GSSDRTVRLWDVSTGNSVR-----------IFTGHKGP  579 (707)
T ss_pred             ---------------chhhhcccccccceEEECCccccccc-CCCCceEEEEEcCCCcEEE-----------EecCCCCc
Confidence                           34466789999999999999999998 6789999999999998876           57889999


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      |.+++|+|+|++|++|+.||.|.+||+..  ...+..+.+|  ...+.++.|+.+|..||+|+.|++|++||+....
T Consensus       580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~--~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  580 VTALAFSPCGRYLASGDEDGLIKIWDLAN--GSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             eEEEEEcCCCceEeecccCCcEEEEEcCC--Ccchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            99999999999999999999999999976  4456667777  5678899999999999999999999999987643

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3e-36  Score=263.26  Aligned_cols=279  Identities=18%  Similarity=0.304  Sum_probs=241.7

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      ..|++++|   +.+|.+||+|..||.++||+....              ++.++..|+++|.++.|+.+|.||++++.|+
T Consensus       236 kdVT~L~W---n~~G~~LatG~~~G~~riw~~~G~--------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~  298 (524)
T KOG0273|consen  236 KDVTSLDW---NNDGTLLATGSEDGEARIWNKDGN--------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDG  298 (524)
T ss_pred             CCcceEEe---cCCCCeEEEeecCcEEEEEecCch--------------hhhhhhccCCceEEEEEcCCCCEEEeccCCc
Confidence            45788888   999999999999999999998654              3778889999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390          131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS  210 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (512)
                      ++.+||..++...+.+.-|..+-..+.|-.+  ..|++++.|+.|+|+.+......                        
T Consensus       299 ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~------------------------  352 (524)
T KOG0273|consen  299 TTILWDAHTGTVKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPV------------------------  352 (524)
T ss_pred             cEEEEeccCceEEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcc------------------------
Confidence            9999999999999999989888788899754  68999999999999999755433                        


Q ss_pred             ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC----
Q 010390          211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG----  286 (512)
Q Consensus       211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----  286 (512)
                         ..+.+|.++|.++.|+|.+..|++++ .|++++||.........           .+..|...|..+.|+|+|    
T Consensus       353 ---~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~~~-----------~l~~Hskei~t~~wsp~g~v~~  417 (524)
T KOG0273|consen  353 ---KTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNSVH-----------DLQAHSKEIYTIKWSPTGPVTS  417 (524)
T ss_pred             ---eeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcchh-----------hhhhhccceeeEeecCCCCccC
Confidence               36678999999999999999999855 79999999987766554           578888899999999864    


Q ss_pred             -----CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc
Q 010390          287 -----VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS  361 (512)
Q Consensus       287 -----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~  361 (512)
                           ..+++++.|++|++||+..  ..++..+..|.  .++.+++|+|+|+++|+|+.||.|++|++..++.. ..+. 
T Consensus       418 n~~~~~~l~sas~dstV~lwdv~~--gv~i~~f~kH~--~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~-~s~~-  491 (524)
T KOG0273|consen  418 NPNMNLMLASASFDSTVKLWDVES--GVPIHTLMKHQ--EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV-KSYQ-  491 (524)
T ss_pred             CCcCCceEEEeecCCeEEEEEccC--CceeEeeccCC--CceEEEEecCCCcEEEecCCCCeeEeccccchhee-Eeec-
Confidence                 6799999999999999876  44566666654  56889999999999999999999999999988763 4444 


Q ss_pred             ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          362 HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       362 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      -.+.|..++|+.+| .+|..+-.|+.+++-|+.
T Consensus       492 ~~~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  492 GTGGIFELCWNAAG-DKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCCeEEEEEEcCCC-CEEEEEecCCCceEEEec
Confidence            45679999999999 899999999999999875

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-36  Score=242.64  Aligned_cols=287  Identities=20%  Similarity=0.335  Sum_probs=241.7

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      ..+..|+++|.++.|   +-||+|.++++.|.+|++|+...+             ..++++.+|..+|..++.+.|+..+
T Consensus        11 ~~l~~~qgaV~avry---N~dGnY~ltcGsdrtvrLWNp~rg-------------~liktYsghG~EVlD~~~s~Dnskf   74 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRY---NVDGNYCLTCGSDRTVRLWNPLRG-------------ALIKTYSGHGHEVLDAALSSDNSKF   74 (307)
T ss_pred             eeecccccceEEEEE---ccCCCEEEEcCCCceEEeeccccc-------------ceeeeecCCCceeeecccccccccc
Confidence            346789999999999   999999999999999999998766             4489999999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      ++|+.|..|.+||+++|+..+.+.+|.+.|+.+.|+.+. ..+++|+.|.++++||-+......                
T Consensus        75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~eP----------------  137 (307)
T KOG0316|consen   75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEP----------------  137 (307)
T ss_pred             ccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCc----------------
Confidence            999999999999999999999999999999999999877 899999999999999998765332                


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                               +..+......|.++...   ...+++|+.||+++.||++.++...             .....+|+++.|+
T Consensus       138 ---------iQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~s-------------Dy~g~pit~vs~s  192 (307)
T KOG0316|consen  138 ---------IQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSS-------------DYFGHPITSVSFS  192 (307)
T ss_pred             ---------cchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeeh-------------hhcCCcceeEEec
Confidence                     22334455678887764   2345568899999999999987643             3334679999999


Q ss_pred             CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc
Q 010390          284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD  363 (512)
Q Consensus       284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~  363 (512)
                      ++++..++++.|+++++.|-.+  .+.+..+.+|....+-...+++.....+++|++||.|++||+..... +..+..|.
T Consensus       193 ~d~nc~La~~l~stlrLlDk~t--GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~-~sk~~~~~  269 (307)
T KOG0316|consen  193 KDGNCSLASSLDSTLRLLDKET--GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ-ISKLSVVS  269 (307)
T ss_pred             CCCCEEEEeeccceeeecccch--hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee-eeeeccCC
Confidence            9999999999999999999765  45677888888888888889999999999999999999999988766 45666666


Q ss_pred             CC-eEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          364 GE-VTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       364 ~~-v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      .. |.+++++|.- ..|+++.. +.+..|--
T Consensus       270 ~v~v~dl~~hp~~-~~f~~A~~-~~~~~~~~  298 (307)
T KOG0316|consen  270 TVIVTDLSCHPTM-DDFITATG-HGDLFWYQ  298 (307)
T ss_pred             ceeEEeeecccCc-cceeEecC-Cceeceee
Confidence            66 8999999988 44555543 34566643

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.6e-36  Score=278.15  Aligned_cols=296  Identities=14%  Similarity=0.246  Sum_probs=244.4

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCC-CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDED-GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      ..+|..++|   +..|++||.|+.. |.+.||+.+....             +...++|...+++++++|||+++|+|+.
T Consensus       307 ~~~I~t~~~---N~tGDWiA~g~~klgQLlVweWqsEsY-------------VlKQQgH~~~i~~l~YSpDgq~iaTG~e  370 (893)
T KOG0291|consen  307 DQKILTVSF---NSTGDWIAFGCSKLGQLLVWEWQSESY-------------VLKQQGHSDRITSLAYSPDGQLIATGAE  370 (893)
T ss_pred             cceeeEEEe---cccCCEEEEcCCccceEEEEEeeccce-------------eeeccccccceeeEEECCCCcEEEeccC
Confidence            466777877   8889999999755 8999999977533             6667899999999999999999999999


Q ss_pred             CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      ||.|+|||...+-|..+|..|+..|+.+.|+..+ +.+++.+.||+|+.||+........+..                 
T Consensus       371 DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~-----------------  432 (893)
T KOG0291|consen  371 DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTS-----------------  432 (893)
T ss_pred             CCcEEEEeccCceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecC-----------------
Confidence            9999999999999999999999999999999988 9999999999999999986655443322                 


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                               .......|++..|.|..+++.+-+.-.|.+|++.+++.+.           .+.+|.++|.+++|+|++..
T Consensus       433 ---------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD-----------iLsGHEgPVs~l~f~~~~~~  492 (893)
T KOG0291|consen  433 ---------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD-----------ILSGHEGPVSGLSFSPDGSL  492 (893)
T ss_pred             ---------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee-----------hhcCCCCcceeeEEccccCe
Confidence                     1233577888889898877744333479999999999876           58999999999999999999


Q ss_pred             EEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC------------
Q 010390          289 LTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP------------  356 (512)
Q Consensus       289 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~------------  356 (512)
                      |++++.|.+|++||+-.... .+   +...+...+..++|+|+|+.|++++-||.|.+||.......-            
T Consensus       493 LaS~SWDkTVRiW~if~s~~-~v---Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR  568 (893)
T KOG0291|consen  493 LASGSWDKTVRIWDIFSSSG-TV---ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGR  568 (893)
T ss_pred             EEeccccceEEEEEeeccCc-ee---eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccc
Confidence            99999999999999865321 22   222334567889999999999999999999999987543210            


Q ss_pred             ---cee----ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccC
Q 010390          357 ---IKL----KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSP  404 (512)
Q Consensus       357 ---~~~----~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  404 (512)
                         -.+    .......+.+++++|| ..+++||..+.|++|++.++-+++.+..
T Consensus       569 ~~~D~~ta~~sa~~K~Ftti~ySaDG-~~IlAgG~sn~iCiY~v~~~vllkkfqi  622 (893)
T KOG0291|consen  569 KETDRITAENSAKGKTFTTICYSADG-KCILAGGESNSICIYDVPEGVLLKKFQI  622 (893)
T ss_pred             cccceeehhhcccCCceEEEEEcCCC-CEEEecCCcccEEEEECchhheeeeEEe
Confidence               001    1123578999999999 8999999999999999999988877543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.2e-36  Score=288.13  Aligned_cols=296  Identities=23%  Similarity=0.435  Sum_probs=245.6

Q ss_pred             EeecCCc-cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390           43 TVEHHGE-ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        43 ~~~~~gh-~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      ...+.+| ...|.++.|   +++|++|++++.++.+++|+......           .....+.+|...|++++|+|+++
T Consensus       151 ~~~~~~~~~~sv~~~~f---s~~g~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~l~~h~~~v~~~~fs~d~~  216 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDF---SPDGRALAAASSDGLIRIWKLEGIKS-----------NLLRELSGHTRGVSDVAFSPDGS  216 (456)
T ss_pred             eeeecccccCceEEEEE---cCCCCeEEEccCCCcEEEeecccccc-----------hhhccccccccceeeeEECCCCc
Confidence            3344443 566677666   99999999999999999999855431           23556689999999999999999


Q ss_pred             EEEEEeCCCcEEEEeC-CCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          122 NILTASGDQTIKIWDA-EKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      ++++++.|++|+|||+ ..+..++++.+|...|++++|+|++ +++++|+.|++|++||+++++..              
T Consensus       217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~--------------  281 (456)
T KOG0266|consen  217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV--------------  281 (456)
T ss_pred             EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEE--------------
Confidence            9999999999999999 5568999999999999999999999 99999999999999999975443              


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce--ecccCCCccccccccccccCee
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ--ITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                   ..+.+|...|.+++|++++..++++ +.|+.|++||+.++...  ....        ...... .++
T Consensus       282 -------------~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~--------~~~~~~-~~~  338 (456)
T KOG0266|consen  282 -------------RKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLS--------GAENSA-PVT  338 (456)
T ss_pred             -------------EeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeeccc--------CCCCCC-cee
Confidence                         3677899999999999999999986 57999999999998842  2211        122222 699


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceec-eeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCc
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIE-SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI  357 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~  357 (512)
                      ++.|+|++.++++++.|+.+++||+...  .....+.++... ..+.+...++.+.++++|+.|+.|++|++.++.. ..
T Consensus       339 ~~~fsp~~~~ll~~~~d~~~~~w~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~-~~  415 (456)
T KOG0266|consen  339 SVQFSPNGKYLLSASLDRTLKLWDLRSG--KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI-LQ  415 (456)
T ss_pred             EEEECCCCcEEEEecCCCeEEEEEccCC--cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch-hh
Confidence            9999999999999999999999999763  344455555443 2344556688999999999999999999998655 56


Q ss_pred             eeccc-cCCeEEEEeCCCCCCeEEEEe--CCCcEEEEeCC
Q 010390          358 KLKSH-DGEVTAVNWCPNEAGKIVTSS--DDYTVRLWSLE  394 (512)
Q Consensus       358 ~~~~h-~~~v~~v~~~~~~~~~l~s~~--~dg~i~vwd~~  394 (512)
                      .+.+| ...+..+.|++.. .++++++  .|+.+++|..+
T Consensus       416 ~l~~h~~~~~~~~~~~~~~-~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  416 RLEGHSKAAVSDLSSHPTE-NLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             hhcCCCCCceeccccCCCc-CeeeecCcCCCceEEEecCC
Confidence            78899 8999999999998 8999998  79999999764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-37  Score=250.61  Aligned_cols=296  Identities=19%  Similarity=0.342  Sum_probs=253.4

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      ...-.||+.||..++|....|+|-+|++++.||.-.+-+-+++.-             +.++.+|++.|++.....+...
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-------------igtfeghkgavw~~~l~~na~~   73 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-------------IGTFEGHKGAVWSATLNKNATR   73 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-------------EEeeeccCcceeeeecCchhhh
Confidence            345679999999999999999999999999999988877666644             8899999999999999988888


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      -++++.|-+-+|||.-+|..+.++. |..-|.+++|+.+. +.|++|+.+..+++||++..+...               
T Consensus        74 aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App---------------  136 (334)
T KOG0278|consen   74 AASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPP---------------  136 (334)
T ss_pred             hhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCc---------------
Confidence            8899999999999999999999997 88899999999987 899999999999999998765433               


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ  282 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (512)
                                 ..+.+|.+.|..+.|....+.++++ ++|++|++||.+++..+.....            ..+|+++.+
T Consensus       137 -----------~E~~ghtg~Ir~v~wc~eD~~iLSS-add~tVRLWD~rTgt~v~sL~~------------~s~VtSlEv  192 (334)
T KOG0278|consen  137 -----------KEISGHTGGIRTVLWCHEDKCILSS-ADDKTVRLWDHRTGTEVQSLEF------------NSPVTSLEV  192 (334)
T ss_pred             -----------hhhcCCCCcceeEEEeccCceEEee-ccCCceEEEEeccCcEEEEEec------------CCCCcceee
Confidence                       2456889999999999999999986 5899999999999998765433            345999999


Q ss_pred             CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390          283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH  362 (512)
Q Consensus       283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h  362 (512)
                      +++|.+|.++ ..+.|.+||.....  .++   .......+.+...+|+...+++|++|+.++.||..++........+|
T Consensus       193 s~dG~ilTia-~gssV~Fwdaksf~--~lK---s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh  266 (334)
T KOG0278|consen  193 SQDGRILTIA-YGSSVKFWDAKSFG--LLK---SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH  266 (334)
T ss_pred             ccCCCEEEEe-cCceeEEecccccc--cee---eccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC
Confidence            9999987766 56789999976532  222   22333456778999999999999999999999999998754335899


Q ss_pred             cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          363 DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      -++|.|+.|+|+| ...++||.||+|++|.+..++..
T Consensus       267 ~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  267 FGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CCceEEEEECCCC-ceeeccCCCceEEEEEecCCCch
Confidence            9999999999999 89999999999999999877643

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.4e-37  Score=261.44  Aligned_cols=279  Identities=19%  Similarity=0.314  Sum_probs=234.4

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      ....|+|+.|     |...+++|..|.+|+|||.++...             +..+.||.+.|.|+.|  +.+.|++|+.
T Consensus       196 ~skgVYClQY-----DD~kiVSGlrDnTikiWD~n~~~c-------------~~~L~GHtGSVLCLqy--d~rviisGSS  255 (499)
T KOG0281|consen  196 NSKGVYCLQY-----DDEKIVSGLRDNTIKIWDKNSLEC-------------LKILTGHTGSVLCLQY--DERVIVSGSS  255 (499)
T ss_pred             cCCceEEEEe-----cchhhhcccccCceEEeccccHHH-------------HHhhhcCCCcEEeeec--cceEEEecCC
Confidence            4566899998     778899999999999999877543             7788999999999999  5679999999


Q ss_pred             CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      |.+|+|||+++++++.++.+|...|..+.|+.   .++++++.|.++.+||+.....                       
T Consensus       256 DsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~-----------------------  309 (499)
T KOG0281|consen  256 DSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD-----------------------  309 (499)
T ss_pred             CceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH-----------------------
Confidence            99999999999999999999999999999984   7999999999999999986542                       


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                       ......+.+|...|+.+.|+.  +++++++ .|.+|++|++.+...+.           .+.+|..+|-|+.+  .+++
T Consensus       310 -it~rrVLvGHrAaVNvVdfd~--kyIVsAS-gDRTikvW~~st~efvR-----------tl~gHkRGIAClQY--r~rl  372 (499)
T KOG0281|consen  310 -ITLRRVLVGHRAAVNVVDFDD--KYIVSAS-GDRTIKVWSTSTCEFVR-----------TLNGHKRGIACLQY--RDRL  372 (499)
T ss_pred             -HHHHHHHhhhhhheeeecccc--ceEEEec-CCceEEEEeccceeeeh-----------hhhcccccceehhc--cCeE
Confidence             122335678999999999964  4666644 69999999999998876           57889999988877  5789


Q ss_pred             EEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC--------Cceec
Q 010390          289 LTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD--------PIKLK  360 (512)
Q Consensus       289 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~--------~~~~~  360 (512)
                      +++|+.|.+|++||+..  ...+..+++|.  ..+.++.|.  .+.|++|+.||+|++||+..+..+        +..+.
T Consensus       373 vVSGSSDntIRlwdi~~--G~cLRvLeGHE--eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv  446 (499)
T KOG0281|consen  373 VVSGSSDNTIRLWDIEC--GACLRVLEGHE--ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV  446 (499)
T ss_pred             EEecCCCceEEEEeccc--cHHHHHHhchH--Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhh
Confidence            99999999999999976  34566677764  456667774  578999999999999999876442        34567


Q ss_pred             cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       361 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      .|.+.|..+.|..   ..+++++.|.+|.|||+.++-.-
T Consensus       447 ~hsgRVFrLQFD~---fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  447 EHSGRVFRLQFDE---FQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             hccceeEEEeecc---eEEEeccCCCeEEEEEcCCCCcc
Confidence            7999999999954   78999999999999999987643

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.1e-36  Score=266.13  Aligned_cols=301  Identities=17%  Similarity=0.232  Sum_probs=239.9

Q ss_pred             CCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccc----cCCCcEEEEEEecCCC
Q 010390           47 HGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV----AHQNAIFDLCWIKEDT  121 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~~s~~~~  121 (512)
                      .+|+.+|.+.+|   +|-.. ++|+|+.|-..++|++.........   ....+....+-    .....|++++|+.+|.
T Consensus       175 l~~~~~V~~~~W---nP~~~~llasg~~~s~ari~~l~e~~~~~~~---q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~  248 (524)
T KOG0273|consen  175 LRHESEVFICAW---NPLRDGLLASGSGDSTARIWNLLENSNIGST---QLVLRHCIREGGKSVPSNKDVTSLDWNNDGT  248 (524)
T ss_pred             ccCCCceEEEec---CchhhhhhhccCCccceeeeeehhhccccch---hhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence            349999998888   88777 9999999999999998641100000   00000011111    1236899999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      .||+|+.||.++||+. +|..+.++..|+++|.++.|+.+| ++|++++.|+++.+||..++....              
T Consensus       249 ~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q--------------  312 (524)
T KOG0273|consen  249 LLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQ--------------  312 (524)
T ss_pred             eEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEE--------------
Confidence            9999999999999995 677888999999999999999998 999999999999999998765443              


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                   .+.-|..+-..+.|-.+.. +++ ++.|+.|+++.+.......           .+.+|.+.|.++.
T Consensus       313 -------------~f~~~s~~~lDVdW~~~~~-F~t-s~td~~i~V~kv~~~~P~~-----------t~~GH~g~V~alk  366 (524)
T KOG0273|consen  313 -------------QFEFHSAPALDVDWQSNDE-FAT-SSTDGCIHVCKVGEDRPVK-----------TFIGHHGEVNALK  366 (524)
T ss_pred             -------------eeeeccCCccceEEecCce-Eee-cCCCceEEEEEecCCCcce-----------eeecccCceEEEE
Confidence                         2233445557788876554 444 3479999999988776655           4677999999999


Q ss_pred             eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC---------CEEEEecCCCCEEEEecCCC
Q 010390          282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA---------SHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------~~l~~g~~dg~i~iw~~~~~  352 (512)
                      |+|.+.+|++++.|++++||....  ......+..|.  ..+..+.|+|+|         ..+++++.|++|++||+..+
T Consensus       367 ~n~tg~LLaS~SdD~TlkiWs~~~--~~~~~~l~~Hs--kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g  442 (524)
T KOG0273|consen  367 WNPTGSLLASCSDDGTLKIWSMGQ--SNSVHDLQAHS--KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG  442 (524)
T ss_pred             ECCCCceEEEecCCCeeEeeecCC--Ccchhhhhhhc--cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC
Confidence            999999999999999999999754  33444555554  336678888854         47899999999999999998


Q ss_pred             CCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          353 QADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       353 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      .+ +..+..|..+|++++|+|++ .++++|+.||.|.+|+..+++..+.
T Consensus       443 v~-i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~l~~s  489 (524)
T KOG0273|consen  443 VP-IHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGKLVKS  489 (524)
T ss_pred             ce-eEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchheeEe
Confidence            87 57888999999999999999 8999999999999999999998775

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.2e-35  Score=270.31  Aligned_cols=287  Identities=25%  Similarity=0.432  Sum_probs=240.6

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      ..+++|.++|.+++|   +|++++|++++.||.|++|++.+..             ....+..|...+..+.|+|++++|
T Consensus         3 ~~~~~h~~~i~~~~~---~~~~~~l~~~~~~g~i~i~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~l   66 (289)
T cd00200           3 RTLKGHTGGVTCVAF---SPDGKLLATGSGDGTIKVWDLETGE-------------LLRTLKGHTGPVRDVAASADGTYL   66 (289)
T ss_pred             hHhcccCCCEEEEEE---cCCCCEEEEeecCcEEEEEEeeCCC-------------cEEEEecCCcceeEEEECCCCCEE
Confidence            456789999999999   9999999999999999999997653             256677899999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      ++++.||.|++||+.+++.+..+..|...|.++.|++++ .++++++.|+.|.+||+++.+...                
T Consensus        67 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~----------------  129 (289)
T cd00200          67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLT----------------  129 (289)
T ss_pred             EEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEE----------------
Confidence            999999999999999988888888899999999999986 788888889999999998443221                


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                                 .+..|...+.++.|+|++..+++ ++.++.|++||+++.+...           ....+...+.++.|+
T Consensus       130 -----------~~~~~~~~i~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~~~~-----------~~~~~~~~i~~~~~~  186 (289)
T cd00200         130 -----------TLRGHTDWVNSVAFSPDGTFVAS-SSQDGTIKLWDLRTGKCVA-----------TLTGHTGEVNSVAFS  186 (289)
T ss_pred             -----------EeccCCCcEEEEEEcCcCCEEEE-EcCCCcEEEEEccccccce-----------eEecCccccceEEEC
Confidence                       23356778999999999776665 5469999999998766544           344566689999999


Q ss_pred             CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc
Q 010390          284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD  363 (512)
Q Consensus       284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~  363 (512)
                      ++++.+++++.++.|++||+...  .....+..+  ...+.+++|++++.++++++.||.|++|++.+.+. ...+..|.
T Consensus       187 ~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~~~~  261 (289)
T cd00200         187 PDGEKLLSSSSDGTIKLWDLSTG--KCLGTLRGH--ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC-VQTLSGHT  261 (289)
T ss_pred             CCcCEEEEecCCCcEEEEECCCC--ceecchhhc--CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee-EEEccccC
Confidence            99999999999999999998653  233333232  23678899999999999998899999999987655 45667899


Q ss_pred             CCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      ..|.+++|++++ .+|++++.||.|++|+
T Consensus       262 ~~i~~~~~~~~~-~~l~~~~~d~~i~iw~  289 (289)
T cd00200         262 NSVTSLAWSPDG-KRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEECCCC-CEEEEecCCCeEEecC
Confidence            999999999998 8999999999999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.5e-35  Score=243.65  Aligned_cols=276  Identities=17%  Similarity=0.263  Sum_probs=229.8

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      ..+.+++|.+.|+++.|++|.++|++++.||.+.|||.-+...++.+.-....|...+|+|.+ +++++|+.|....||+
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYP  125 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEe
Confidence            357789999999999999999999999999999999999888888888888899999999998 9999999999999999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~  259 (512)
                      +.+.....                     .....+.+.+|.+.+.|+.|.+|+ .+++ ++-|.+..+||+++++...  
T Consensus       126 ls~~d~~g---------------------~~~v~r~l~gHtgylScC~f~dD~-~ilT-~SGD~TCalWDie~g~~~~--  180 (343)
T KOG0286|consen  126 LSTRDAEG---------------------NVRVSRELAGHTGYLSCCRFLDDN-HILT-GSGDMTCALWDIETGQQTQ--  180 (343)
T ss_pred             cccccccc---------------------cceeeeeecCccceeEEEEEcCCC-ceEe-cCCCceEEEEEcccceEEE--
Confidence            98542211                     112233577999999999999855 4554 4459999999999998876  


Q ss_pred             cCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  338 (512)
                               .+.+|.+.|.++.++| +++.+++|+.|+..++||++..  ..++.+.+|.  ..|..+.|.|+|.-+++|
T Consensus       181 ---------~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghe--sDINsv~ffP~G~afatG  247 (343)
T KOG0286|consen  181 ---------VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHE--SDINSVRFFPSGDAFATG  247 (343)
T ss_pred             ---------EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccc--cccceEEEccCCCeeeec
Confidence                     5789999999999999 9999999999999999999874  6777888875  558889999999999999


Q ss_pred             cCCCCEEEEecCCCCCCCceecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeecc
Q 010390          339 SSDGNAYVWQVNKPQADPIKLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPS  416 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  416 (512)
                      ++|++.++||++..+.. ..+..  -..+|++++|+..| ++|++|..|.++.+||.-.++....+.  .+..+|.++..
T Consensus       248 SDD~tcRlyDlRaD~~~-a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~--GHeNRvScl~~  323 (343)
T KOG0286|consen  248 SDDATCRLYDLRADQEL-AVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLA--GHENRVSCLGV  323 (343)
T ss_pred             CCCceeEEEeecCCcEE-eeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEee--ccCCeeEEEEE
Confidence            99999999999987763 33331  24589999999999 899999999999999998887665432  34444444433


Q ss_pred             ch
Q 010390          417 TE  418 (512)
Q Consensus       417 ~~  418 (512)
                      .+
T Consensus       324 s~  325 (343)
T KOG0286|consen  324 SP  325 (343)
T ss_pred             CC
Confidence            33

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.8e-35  Score=271.38  Aligned_cols=323  Identities=19%  Similarity=0.295  Sum_probs=258.2

Q ss_pred             eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      +..++.||-+.|.+|.|   +.|.++|++|+.|-.++||+++..+.           -....+.+|++.|.++-|..+..
T Consensus       137 l~r~~~g~fddi~si~W---s~DSr~l~~gsrD~s~rl~~v~~~k~-----------~~~~~l~gHkd~VvacfF~~~~~  202 (893)
T KOG0291|consen  137 LHRTYLGHFDDITSIDW---SDDSRLLVTGSRDLSARLFGVDGNKN-----------LFTYALNGHKDYVVACFFGANSL  202 (893)
T ss_pred             EeeeecCCccceeEEEe---ccCCceEEeccccceEEEEEeccccc-----------cceEeccCCCcceEEEEeccCcc
Confidence            33466789999999999   99999999999999999999986543           22567889999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCC-----------------------Cee-----------eecccCcCCCEEEEEeeCCCCCeEE
Q 010390          122 NILTASGDQTIKIWDAEK-----------------------KKC-----------TGALMGHTGSIKSLCSHPTNSDILV  167 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~-----------------------~~~-----------~~~~~~h~~~v~~l~~~~~~~~~l~  167 (512)
                      .|++.+.||.+.+|....                       ++.           ..-+......|++.+|++.- ++|+
T Consensus       203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-~~lv  281 (893)
T KOG0291|consen  203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-NLLV  281 (893)
T ss_pred             eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc-eEEE
Confidence            999999999999997651                       111           01122233689999999966 8999


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCcccc-ceeeeccccccccc---------------ccccccceecccccccEEEEEEeec
Q 010390          168 SGSRDGSFAIWDLRCKSSPKSNCAE-SFVFSSAVVKGAHL---------------LSQSKRVSRRKAASMSITSVLYLKD  231 (512)
Q Consensus       168 s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~  231 (512)
                      +|-..|...+|++..-..+...... ..+..+.+...+..               ......+....+|...+++++++||
T Consensus       282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD  361 (893)
T KOG0291|consen  282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD  361 (893)
T ss_pred             EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC
Confidence            9999999999999877665543322 22222222211111               1122334567789999999999999


Q ss_pred             CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCce
Q 010390          232 EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPI  311 (512)
Q Consensus       232 ~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  311 (512)
                      |+.+++ |++||+|++||...+-+..           .+..|...|+.+.|+..|+.+++++.||+|+.||+...  ...
T Consensus       362 gq~iaT-G~eDgKVKvWn~~SgfC~v-----------TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY--rNf  427 (893)
T KOG0291|consen  362 GQLIAT-GAEDGKVKVWNTQSGFCFV-----------TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY--RNF  427 (893)
T ss_pred             CcEEEe-ccCCCcEEEEeccCceEEE-----------EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc--cee
Confidence            999987 6689999999999988877           57889999999999999999999999999999998653  234


Q ss_pred             EeeeeceeceeEEEEEECCCCCEEEEecCCC-CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390          312 QHFSGCRIESFYVKSEICPNASHILSGSSDG-NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL  390 (512)
Q Consensus       312 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v  390 (512)
                      +++.... .....+++..|.|..+++|+.|. .|.+|++++++. +..+.||+++|.+++|+|++ ..|+|+|.|.+|++
T Consensus       428 RTft~P~-p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRi  504 (893)
T KOG0291|consen  428 RTFTSPE-PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRI  504 (893)
T ss_pred             eeecCCC-ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcceeeEEcccc-CeEEeccccceEEE
Confidence            4444332 23466789999999999999886 499999999987 57899999999999999999 89999999999999


Q ss_pred             EeCCCC
Q 010390          391 WSLENS  396 (512)
Q Consensus       391 wd~~~~  396 (512)
                      ||+-..
T Consensus       505 W~if~s  510 (893)
T KOG0291|consen  505 WDIFSS  510 (893)
T ss_pred             EEeecc
Confidence            998765

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=8.7e-35  Score=299.53  Aligned_cols=296  Identities=16%  Similarity=0.298  Sum_probs=230.1

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEE
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNIL  124 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~  124 (512)
                      +.+|.+.|.+++|   +|+|++||+|+.|+.|+|||.........     ....+...+. +...|.+++|++ ++.+|+
T Consensus       479 ~~~~~~~V~~i~f---s~dg~~latgg~D~~I~iwd~~~~~~~~~-----~~~~~~~~~~-~~~~v~~l~~~~~~~~~la  549 (793)
T PLN00181        479 LLNSSNLVCAIGF---DRDGEFFATAGVNKKIKIFECESIIKDGR-----DIHYPVVELA-SRSKLSGICWNSYIKSQVA  549 (793)
T ss_pred             ccCCCCcEEEEEE---CCCCCEEEEEeCCCEEEEEECCccccccc-----ccccceEEec-ccCceeeEEeccCCCCEEE
Confidence            4558999999999   99999999999999999999764211000     0001122233 356899999988 578999


Q ss_pred             EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      +++.||+|+|||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.||.|++||++++....                 
T Consensus       550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~-----------------  612 (793)
T PLN00181        550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG-----------------  612 (793)
T ss_pred             EEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE-----------------
Confidence            999999999999999999999999999999999998555899999999999999998654322                 


Q ss_pred             ccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                                .+. +...+.++.|++ ++..+++ |+.||.|++||+++......          ...+|...|.++.|.
T Consensus       613 ----------~~~-~~~~v~~v~~~~~~g~~lat-gs~dg~I~iwD~~~~~~~~~----------~~~~h~~~V~~v~f~  670 (793)
T PLN00181        613 ----------TIK-TKANICCVQFPSESGRSLAF-GSADHKVYYYDLRNPKLPLC----------TMIGHSKTVSYVRFV  670 (793)
T ss_pred             ----------EEe-cCCCeEEEEEeCCCCCEEEE-EeCCCeEEEEECCCCCccce----------EecCCCCCEEEEEEe
Confidence                      111 234688999965 4666655 66899999999987653221          356777889999997


Q ss_pred             CCCCEEEEEecCCeEEEEEcccCC----CCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC---
Q 010390          284 SNGVFLTASCMDHRIYLYNVLQLD----KGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP---  356 (512)
Q Consensus       284 ~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~---  356 (512)
                       ++.+|++++.|+.|++||+....    ...+..+.+|.  ..+..++|++++++|++|+.|+.|++|+........   
T Consensus       671 -~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~  747 (793)
T PLN00181        671 -DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYK  747 (793)
T ss_pred             -CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEe
Confidence             77899999999999999986432    23455666653  446678999999999999999999999976543210   


Q ss_pred             ---------ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          357 ---------IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       357 ---------~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                               .....|...|.+++|+|++ ..|++|+.||.|+||++
T Consensus       748 ~~~~~~~~~~~~~~~~~~V~~v~ws~~~-~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        748 FKTIDPVSGLEVDDASQFISSVCWRGQS-STLVAANSTGNIKILEM  792 (793)
T ss_pred             cccCCcccccccCCCCcEEEEEEEcCCC-CeEEEecCCCcEEEEec
Confidence                     0123456679999999999 89999999999999997

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-36  Score=242.63  Aligned_cols=284  Identities=21%  Similarity=0.389  Sum_probs=225.1

Q ss_pred             ccceeeecCcccccccccCCCCC-------CceeeeeeEeecC------------CccCCcceEEEEEecCCC-cEEEEe
Q 010390           12 NVRSRELNGFKARKRPYFGDVVT-------DFTEIGAVTVEHH------------GEETPPLAVSFCKTSKNS-HIFAVS   71 (512)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------gh~~~v~~v~~~~~s~~~-~~latg   71 (512)
                      ..+..+++||+++++||...-++       +....|.+++.-.            .-.+.++.|+|   +++. +.++++
T Consensus         3 ~~~tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~W---se~~e~~~~~a   79 (311)
T KOG0277|consen    3 THTTPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAW---SENHENQVIAA   79 (311)
T ss_pred             ceecCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeee---cCCCcceEEEE
Confidence            45677899999999999887553       2333344443322            13556778888   5543 578888


Q ss_pred             eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeeeecccCcC
Q 010390           72 DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKKKCTGALMGHT  150 (512)
Q Consensus        72 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~  150 (512)
                      +.||+++|||....            ..++..++.|+.+|.++.|++ +++.+++++.|++|++|+...++.+.++.+|.
T Consensus        80 ~GDGSLrl~d~~~~------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~  147 (311)
T KOG0277|consen   80 SGDGSLRLFDLTMP------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN  147 (311)
T ss_pred             ecCceEEEeccCCC------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc
Confidence            89999999995322            346889999999999999999 66778888999999999999999999999999


Q ss_pred             CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390          151 GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK  230 (512)
Q Consensus       151 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  230 (512)
                      ..|....|+|..++++++++.|+++++||++......                           .+..|..++.++.|+.
T Consensus       148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~---------------------------~i~ah~~Eil~cdw~k  200 (311)
T KOG0277|consen  148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM---------------------------SIEAHNSEILCCDWSK  200 (311)
T ss_pred             cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee---------------------------EEEeccceeEeecccc
Confidence            9999999999999999999999999999998543221                           2567888999999999


Q ss_pred             cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc
Q 010390          231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP  310 (512)
Q Consensus       231 ~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  310 (512)
                      -...++++|+.|+.|+.||+++.+....          ++.+|.-.                                  
T Consensus       201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~----------eL~gh~~A----------------------------------  236 (311)
T KOG0277|consen  201 YNHNVLATGGVDNLVRGWDIRNLRTPLF----------ELNGHGLA----------------------------------  236 (311)
T ss_pred             cCCcEEEecCCCceEEEEehhhccccce----------eecCCceE----------------------------------
Confidence            8888888888999999999987653321          22222222                                  


Q ss_pred             eEeeeeceeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390          311 IQHFSGCRIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVR  389 (512)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~  389 (512)
                                  +.+++|||. ...|++++.|-+++|||.......+.+...|..-|..+.|++..+.++|+++.|+.++
T Consensus       237 ------------VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~  304 (311)
T KOG0277|consen  237 ------------VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLY  304 (311)
T ss_pred             ------------EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccccee
Confidence                        444566665 3567888888888888887666556677789999999999998889999999999999


Q ss_pred             EEeC
Q 010390          390 LWSL  393 (512)
Q Consensus       390 vwd~  393 (512)
                      ||+.
T Consensus       305 Vw~p  308 (311)
T KOG0277|consen  305 VWNP  308 (311)
T ss_pred             eecc
Confidence            9984

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.9e-36  Score=258.76  Aligned_cols=278  Identities=15%  Similarity=0.290  Sum_probs=235.5

Q ss_pred             CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390          107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      -+..|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|.++.|++++ .++++|+.+|.|++|+..-....
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnnVk  173 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNNVK  173 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchhhhH
Confidence            35689999999999999999999999999986666666678999999999999988 99999999999999998744322


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                      .                           ....|...|++++|+|+...+++++ +||.|+|||....+...         
T Consensus       174 ~---------------------------~~ahh~eaIRdlafSpnDskF~t~S-dDg~ikiWdf~~~kee~---------  216 (464)
T KOG0284|consen  174 I---------------------------IQAHHAEAIRDLAFSPNDSKFLTCS-DDGTIKIWDFRMPKEER---------  216 (464)
T ss_pred             H---------------------------hhHhhhhhhheeccCCCCceeEEec-CCCeEEEEeccCCchhh---------
Confidence            1                           1123448999999999888888755 89999999999877654         


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV  346 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  346 (512)
                        .+.+|.-.|.+++|+|...++++++.|+.|++||.+++  ..+.++..|+  ..|+.+.|++++++|++++.|..+++
T Consensus       217 --vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg--~cl~tlh~HK--ntVl~~~f~~n~N~Llt~skD~~~kv  290 (464)
T KOG0284|consen  217 --VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG--SCLATLHGHK--NTVLAVKFNPNGNWLLTGSKDQSCKV  290 (464)
T ss_pred             --eeccCCCCcceeccCCccceeEEccCCceeEeecCCCc--chhhhhhhcc--ceEEEEEEcCCCCeeEEccCCceEEE
Confidence              46888899999999999999999999999999998774  3455555554  56889999999999999999999999


Q ss_pred             EecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccccCC
Q 010390          347 WQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNG  426 (512)
Q Consensus       347 w~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (512)
                      +|+++.+. +..+++|+..|+++.|+|-.+.+|.+|+.||.|..|.+...+.+... +..+...||++...+.+.+++.+
T Consensus       291 ~DiR~mkE-l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i-~~AHd~~iwsl~~hPlGhil~tg  368 (464)
T KOG0284|consen  291 FDIRTMKE-LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI-PPAHDGEIWSLAYHPLGHILATG  368 (464)
T ss_pred             EehhHhHH-HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC-CcccccceeeeeccccceeEeec
Confidence            99996555 57899999999999999988899999999999999999854444432 44567789999999999999887


Q ss_pred             CCcc
Q 010390          427 EPGW  430 (512)
Q Consensus       427 ~~~~  430 (512)
                      +...
T Consensus       369 snd~  372 (464)
T KOG0284|consen  369 SNDR  372 (464)
T ss_pred             CCCc
Confidence            6654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-36  Score=253.35  Aligned_cols=297  Identities=19%  Similarity=0.260  Sum_probs=242.1

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      -+.-++.|...+..+..+.--..           ..+...+.+|...|+.+-|+|+-..+++++.|++|++||..++++.
T Consensus        75 ~~~el~~g~pt~~~~~~~~wipR-----------p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e  143 (406)
T KOG0295|consen   75 TGDELIAGDPTGSKRTPALWIPR-----------PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE  143 (406)
T ss_pred             cccccccCCCCcCccChhhcCCC-----------CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh
Confidence            34456666555555544432111           2446677889999999999999999999999999999999999999


Q ss_pred             ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390          144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI  223 (512)
Q Consensus       144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (512)
                      ..+++|...|..|+|+..| .++++++.|-.+++||..+.                          ........+|+..|
T Consensus       144 ~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~--------------------------~~c~ks~~gh~h~v  196 (406)
T KOG0295|consen  144 RSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTF--------------------------FRCIKSLIGHEHGV  196 (406)
T ss_pred             hhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHH--------------------------HHHHHHhcCcccce
Confidence            9999999999999999988 99999999988999998742                          22334566888899


Q ss_pred             EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEc
Q 010390          224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV  303 (512)
Q Consensus       224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  303 (512)
                      .+++|-|.|.++++++ .|.+|+.|++.++-++.           .+.+|...|..++.+.||.++++++.|.++++|-+
T Consensus       197 S~V~f~P~gd~ilS~s-rD~tik~We~~tg~cv~-----------t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~  264 (406)
T KOG0295|consen  197 SSVFFLPLGDHILSCS-RDNTIKAWECDTGYCVK-----------TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV  264 (406)
T ss_pred             eeEEEEecCCeeeecc-cccceeEEecccceeEE-----------eccCchHhEEEEEecCCeeEEEecCCCceEEEEEe
Confidence            9999999999999865 89999999999999887           47778889999999999999999999999999998


Q ss_pred             ccCCCCceEeeeeceeceeEEEEEECC---------------CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE
Q 010390          304 LQLDKGPIQHFSGCRIESFYVKSEICP---------------NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA  368 (512)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~---------------~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~  368 (512)
                      .+.+.........+    .+-+++|.|               .++++++++.|++|++||+.++.+ +.++.+|...|..
T Consensus       265 ~t~~~k~~lR~hEh----~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-L~tL~ghdnwVr~  339 (406)
T KOG0295|consen  265 ATKQCKAELREHEH----PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-LFTLVGHDNWVRG  339 (406)
T ss_pred             ccchhhhhhhcccc----ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE-EEEEecccceeee
Confidence            76543333332222    344566654               136899999999999999999987 5789999999999


Q ss_pred             EEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccch
Q 010390          369 VNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTE  418 (512)
Q Consensus       369 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (512)
                      ++|+|.| ++|+|+.+|+++++||+.+++|..+..+..  .-+.++++..
T Consensus       340 ~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~ah~--hfvt~lDfh~  386 (406)
T KOG0295|consen  340 VAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLEAHE--HFVTSLDFHK  386 (406)
T ss_pred             eEEcCCC-eEEEEEecCCcEEEEEeccceeeeccCCCc--ceeEEEecCC
Confidence            9999999 999999999999999999999999876433  3344444444

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.6e-35  Score=268.37  Aligned_cols=390  Identities=17%  Similarity=0.259  Sum_probs=290.6

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .+.+.+.||...|+.+.|   ...|..||+|+.|+.|.+||+-...             -...+.+|++.|+..-|..+.
T Consensus        98 ~~~~tfngHK~AVt~l~f---d~~G~rlaSGskDt~IIvwDlV~E~-------------Gl~rL~GHkd~iT~~~F~~~~  161 (888)
T KOG0306|consen   98 EILITFNGHKAAVTTLKF---DKIGTRLASGSKDTDIIVWDLVGEE-------------GLFRLRGHKDSITQALFLNGD  161 (888)
T ss_pred             ceeeeecccccceEEEEE---cccCceEeecCCCccEEEEEeccce-------------eeEEeecchHHHhHHhccCCC
Confidence            667788999999999999   9999999999999999999986542             377899999999999999888


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC-------------
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK-------------  187 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-------------  187 (512)
                      ++|++.+.|+.|++||+++..|..+...|.+.|+++++.+   +.+++++.|+.+++|++.......             
T Consensus       162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~  238 (888)
T KOG0306|consen  162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGT  238 (888)
T ss_pred             eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccce
Confidence            9999999999999999999999999999999999999986   689999999999999982110000             


Q ss_pred             -------------Cccccce------------------------------------------------------------
Q 010390          188 -------------SNCAESF------------------------------------------------------------  194 (512)
Q Consensus       188 -------------~~~~~~~------------------------------------------------------------  194 (512)
                                   ......+                                                            
T Consensus       239 ~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir  318 (888)
T KOG0306|consen  239 FIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR  318 (888)
T ss_pred             eeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence                         0000000                                                            


Q ss_pred             ----eeecccccccccc-----------------c--------ccccceecccccccEEEEEEeecCCEEEEEeecCCeE
Q 010390          195 ----VFSSAVVKGAHLL-----------------S--------QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIV  245 (512)
Q Consensus       195 ----~~~~~~~~~~~~~-----------------~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i  245 (512)
                          +.+....++.+..                 .        .........+|...|.+++++.+...+++ | .++.+
T Consensus       319 ~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S-g-a~~Si  396 (888)
T KOG0306|consen  319 TSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS-G-AGESI  396 (888)
T ss_pred             chhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee-c-CCCcE
Confidence                0000000000000                 0        00001245678899999999988877765 4 47899


Q ss_pred             EEEeccCccceecccCCCc-----------------------------cccccccccccCeeEEEeCCCCCEEEEEecCC
Q 010390          246 KFWDTRNLKAQITQAWPHA-----------------------------ESSSAKETRLHGISSLSQDSNGVFLTASCMDH  296 (512)
Q Consensus       246 ~iwd~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  296 (512)
                      ++|+..+.+++.+......                             ........|.+.|.+++.+||+..+++|+.|.
T Consensus       397 kiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk  476 (888)
T KOG0306|consen  397 KIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK  476 (888)
T ss_pred             EEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc
Confidence            9999998887766533211                             11124568899999999999999999999999


Q ss_pred             eEEEEEcccCCC-----CceEee---eeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE
Q 010390          297 RIYLYNVLQLDK-----GPIQHF---SGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA  368 (512)
Q Consensus       297 ~i~i~d~~~~~~-----~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~  368 (512)
                      +|++||..-...     ..+..+   ..-..+..+.++.+||||++||++--|++++||-+++-+. ...+.||.-+|.|
T Consensus       477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF-flsLYGHkLPV~s  555 (888)
T KOG0306|consen  477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF-FLSLYGHKLPVLS  555 (888)
T ss_pred             EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-eeeecccccceeE
Confidence            999999743221     111111   1223456688999999999999999999999999998776 4578899999999


Q ss_pred             EEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccccC-C-------------------CC
Q 010390          369 VNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMN-G-------------------EP  428 (512)
Q Consensus       369 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~~  428 (512)
                      +..+||+ .+++|||.|.+|+||-++=|.|-+.+-.  +...++++.+-|...+++. |                   ++
T Consensus       556 mDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~fA--HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~  632 (888)
T KOG0306|consen  556 MDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFFA--HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG  632 (888)
T ss_pred             EeccCCc-CeEEeccCCCceEEeccccchhhhhhhc--ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc
Confidence            9999999 9999999999999999999999876432  3344555555554444432 2                   22


Q ss_pred             cccccCCCCcCCCchhcccCCCC-CCCCC
Q 010390          429 GWLAKGSDRSYNSDDVLNQINSS-DPKNM  456 (512)
Q Consensus       429 ~~~~~~~~~~~~p~~~~~~~~~~-~~~~~  456 (512)
                      +...+- .++..|+|.++..++. ...++
T Consensus       633 H~~ev~-cLav~~~G~~vvs~shD~sIRl  660 (888)
T KOG0306|consen  633 HHSEVW-CLAVSPNGSFVVSSSHDKSIRL  660 (888)
T ss_pred             chheee-eeEEcCCCCeEEeccCCceeEe
Confidence            333333 7888999999988866 33443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.4e-36  Score=277.49  Aligned_cols=253  Identities=19%  Similarity=0.341  Sum_probs=219.7

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-------------------------------eeecccCc
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-------------------------------CTGALMGH  149 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------~~~~~~~h  149 (512)
                      ..++......++|..|++|+.+||.|-.|..|++|.+...+                               ...++.+|
T Consensus       371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH  450 (707)
T KOG0263|consen  371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH  450 (707)
T ss_pred             EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence            34444455789999999999999999999999999987321                               22456789


Q ss_pred             CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390          150 TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL  229 (512)
Q Consensus       150 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  229 (512)
                      .++|....|+|+. ++|++++.|+++|+|.+.+.....                           ...+|..+|+.+.|+
T Consensus       451 ~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V---------------------------~y~GH~~PVwdV~F~  502 (707)
T KOG0263|consen  451 SGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLV---------------------------IYKGHLAPVWDVQFA  502 (707)
T ss_pred             CCceeeeeecccc-cceeeccCCcceeeeecccceeEE---------------------------EecCCCcceeeEEec
Confidence            9999999999998 999999999999999998765433                           556899999999999


Q ss_pred             ecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC
Q 010390          230 KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG  309 (512)
Q Consensus       230 ~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  309 (512)
                      |.|-+++++ +.|++-++|.........           .+.+|...|.|+.|+|+..++++|+.|.++++||+.++.  
T Consensus       503 P~GyYFata-s~D~tArLWs~d~~~PlR-----------ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--  568 (707)
T KOG0263|consen  503 PRGYYFATA-SHDQTARLWSTDHNKPLR-----------IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--  568 (707)
T ss_pred             CCceEEEec-CCCceeeeeecccCCchh-----------hhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--
Confidence            999999986 579999999998865544           578899999999999999999999999999999998744  


Q ss_pred             ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390          310 PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVR  389 (512)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~  389 (512)
                      .++.+.+|.  ..+.+++|||+|++|++|+.||.|.+||+.++.. +..+.+|++.|.++.|+.+| ..||+||.|.+|+
T Consensus       569 ~VRiF~GH~--~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~  644 (707)
T KOG0263|consen  569 SVRIFTGHK--GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVR  644 (707)
T ss_pred             EEEEecCCC--CceEEEEEcCCCceEeecccCCcEEEEEcCCCcc-hhhhhcccCceeEEEEecCC-CEEEecCCCCeEE
Confidence            577777764  6789999999999999999999999999999877 57888999999999999999 8999999999999


Q ss_pred             EEeCCCCccc
Q 010390          390 LWSLENSRCS  399 (512)
Q Consensus       390 vwd~~~~~~~  399 (512)
                      +||+..-...
T Consensus       645 lWD~~~~~~~  654 (707)
T KOG0263|consen  645 LWDLTKVIEL  654 (707)
T ss_pred             EEEchhhccc
Confidence            9998765443

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=8.1e-35  Score=247.73  Aligned_cols=307  Identities=19%  Similarity=0.318  Sum_probs=239.8

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC---EEE
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT---NIL  124 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~---~l~  124 (512)
                      -|.+.|.+|.-   .  +++|++|++||.++|||....              ...++.+|.++|.+++|.-...   .++
T Consensus       103 ~hdDWVSsv~~---~--~~~IltgsYDg~~riWd~~Gk--------------~~~~~~Ght~~ik~v~~v~~n~~~~~fv  163 (423)
T KOG0313|consen  103 LHDDWVSSVKG---A--SKWILTGSYDGTSRIWDLKGK--------------SIKTIVGHTGPIKSVAWVIKNSSSCLFV  163 (423)
T ss_pred             cchhhhhhhcc---c--CceEEEeecCCeeEEEecCCc--------------eEEEEecCCcceeeeEEEecCCccceEE
Confidence            48889999988   4  789999999999999998654              3677889999999999876444   499


Q ss_pred             EEeCCCcEEEEeCCCCee----eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          125 TASGDQTIKIWDAEKKKC----TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      +++.|.++++|.++.++.    +..-+||...|.+++..+++ ..+++|+.|.+|.+|+..............  .....
T Consensus       164 sas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~--~rrk~  240 (423)
T KOG0313|consen  164 SASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSN--RRRKK  240 (423)
T ss_pred             EecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccch--hhhhh
Confidence            999999999999987753    33445999999999999988 999999999999999943222111000000  00000


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                      ............+..+.+|..+|.++.|.+ . ..+.+++.|.+|+.||+.++.......            ....++++
T Consensus       241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~-~v~yS~SwDHTIk~WDletg~~~~~~~------------~~ksl~~i  306 (423)
T KOG0313|consen  241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A-TVIYSVSWDHTIKVWDLETGGLKSTLT------------TNKSLNCI  306 (423)
T ss_pred             hhhhhcccccCceEEecccccceeeEEEcC-C-CceEeecccceEEEEEeecccceeeee------------cCcceeEe
Confidence            000111122344557889999999999998 3 344456699999999999988775432            23458999


Q ss_pred             EeCCCCCEEEEEecCCeEEEEEcccCCCC-ceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCCCCCce
Q 010390          281 SQDSNGVFLTASCMDHRIYLYNVLQLDKG-PIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      ..+|...+|++|+.|..|++||.+..... ....+.+|.  .++..+.|+|... .|++|+.|+++++||+++.+.+++.
T Consensus       307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~--nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd  384 (423)
T KOG0313|consen  307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK--NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD  384 (423)
T ss_pred             ecccccceeeecCCCCceeecCCCCCCCceeEEeeecch--hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence            99999999999999999999999887543 344555664  5888999999765 5689999999999999999978899


Q ss_pred             eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      +.+|.+.|.++.|...  .++++||.|++|+|+.-.
T Consensus       385 I~~h~DKvl~vdW~~~--~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  385 IAGHNDKVLSVDWNEG--GLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eccCCceEEEEeccCC--ceEEeccCcceEEEeccc
Confidence            9999999999999875  499999999999998654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.1e-35  Score=268.68  Aligned_cols=308  Identities=19%  Similarity=0.291  Sum_probs=261.3

Q ss_pred             eeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe
Q 010390           38 EIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI  117 (512)
Q Consensus        38 ~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  117 (512)
                      ....+...+.|..+.|..++|.  .|+.++||+++..+.+++|+..+...              ..+.+|++.|.++...
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~l--G~e~~~laVATNs~~lr~y~~~~~~c--------------~ii~GH~e~vlSL~~~  374 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFL--GPEESHLAVATNSPELRLYTLPTSYC--------------QIIPGHTEAVLSLDVW  374 (775)
T ss_pred             cccEEehhhcCCchhheeeeec--CCccceEEEEeCCCceEEEecCCCce--------------EEEeCchhheeeeeec
Confidence            3445666788999999999996  88899999999999999998876542              3578999999999965


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          118 KEDTNILTASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       118 ~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      .+|.+|+||+.|.++++|.++++    .++....+|...|.+++++..+..+|++++.|+++++|++...+....     
T Consensus       375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-----  449 (775)
T KOG0319|consen  375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-----  449 (775)
T ss_pred             ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-----
Confidence            67889999999999999988544    345667899999999999988889999999999999999986322111     


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR  273 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  273 (512)
                                   ............|+..|++++++|+.+.+++ |+.|.+.++|++.......           .+.+|
T Consensus       450 -------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT-~SqDktaKiW~le~~~l~~-----------vLsGH  504 (775)
T KOG0319|consen  450 -------------PIVLTCRYTERAHDKDINCVAIAPNDKLIAT-GSQDKTAKIWDLEQLRLLG-----------VLSGH  504 (775)
T ss_pred             -------------cceehhhHHHHhhcccccceEecCCCceEEe-cccccceeeecccCceEEE-----------EeeCC
Confidence                         0011112245689999999999999988887 6699999999999666554           58999


Q ss_pred             ccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390          274 LHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      ..+|.++.|++..+.+++++.|++|+||.+.+  ...+.++.+|.  +.+..+.|-.+|..|++++.||-|++|++.+..
T Consensus       505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~--fSClkT~eGH~--~aVlra~F~~~~~qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSIST--FSCLKTFEGHT--SAVLRASFIRNGKQLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             ccceEEEEeccccceeEeccCCceEEEEEecc--ceeeeeecCcc--ceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence            99999999999999999999999999999976  45778888885  558889999999999999999999999999988


Q ss_pred             CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          354 ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       354 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      + ...+.+|++.|++++.++.. ..++||+.||.|.+|.=.+.+
T Consensus       581 C-~~tlD~H~DrvWaL~~~~~~-~~~~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  581 C-EMTLDAHNDRVWALSVSPLL-DMFVTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             h-hhhhhhccceeEEEeecCcc-ceeEecCCCeEEEEeecCcHH
Confidence            7 57899999999999999999 799999999999999765543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-34  Score=232.03  Aligned_cols=297  Identities=18%  Similarity=0.272  Sum_probs=238.9

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      +.++||+.|++-|.|   +.+|++|.+++.|..+.||-..+++             .+.++.+|.+.|+++....+.++|
T Consensus         4 i~l~GHERplTqiKy---N~eGDLlFscaKD~~~~vw~s~nGe-------------rlGty~GHtGavW~~Did~~s~~l   67 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKY---NREGDLLFSCAKDSTPTVWYSLNGE-------------RLGTYDGHTGAVWCCDIDWDSKHL   67 (327)
T ss_pred             cccccCccccceEEe---cCCCcEEEEecCCCCceEEEecCCc-------------eeeeecCCCceEEEEEecCCccee
Confidence            467899999999999   9999999999999999999875553             388999999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC-----CCcEEEEeCCCCCCCCCccccceeeec
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR-----DGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      ++|+.|.++++||+++|+++..+. -..+|..+.|++.+ ++++.+..     .+.|.++|++.......          
T Consensus        68 iTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~----------  135 (327)
T KOG0643|consen   68 ITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDID----------  135 (327)
T ss_pred             eeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhc----------
Confidence            999999999999999999999988 45689999999988 66655543     36799999985442111          


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                ...+......+...++.+.|.|-++.+++ |.+||.|.+||++++.....          ....|...|+
T Consensus       136 ----------s~ep~~kI~t~~skit~a~Wg~l~~~ii~-Ghe~G~is~~da~~g~~~v~----------s~~~h~~~In  194 (327)
T KOG0643|consen  136 ----------SEEPYLKIPTPDSKITSALWGPLGETIIA-GHEDGSISIYDARTGKELVD----------SDEEHSSKIN  194 (327)
T ss_pred             ----------ccCceEEecCCccceeeeeecccCCEEEE-ecCCCcEEEEEcccCceeee----------chhhhccccc
Confidence                      12223355567789999999999999998 66899999999999876654          4567778999


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe--cCCCC---
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ--VNKPQ---  353 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~--~~~~~---  353 (512)
                      .|.+++|..++++++.|.+-++||..+.+  .++.   ...+.++.+.+++|...+++.|+.....-|=-  .+.++   
T Consensus       195 d~q~s~d~T~FiT~s~Dttakl~D~~tl~--v~Kt---y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEA  269 (327)
T KOG0643|consen  195 DLQFSRDRTYFITGSKDTTAKLVDVRTLE--VLKT---YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEA  269 (327)
T ss_pred             cccccCCcceEEecccCccceeeecccee--eEEE---eeecccccceecccccceEEecCCceeeeeeeecccccchhh
Confidence            99999999999999999999999987633  2233   33346688899999988887776433222221  11111   


Q ss_pred             --------CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          354 --------ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       354 --------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                              +.+....+|-++|++|+|+|+| ...+||+.||.|++.-++.
T Consensus       270 rFyh~i~eEEigrvkGHFGPINsvAfhPdG-ksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  270 RFYHLIFEEEIGRVKGHFGPINSVAFHPDG-KSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             hHHHHHHHHHhccccccccCcceeEECCCC-cccccCCCCceEEEEEecc
Confidence                    1234578999999999999999 8999999999999987654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=247.59  Aligned_cols=294  Identities=18%  Similarity=0.306  Sum_probs=247.5

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      |....+.|..|   ||||+||++|+.||-|.+||..+++..     ++...+....+.-+..+|.|+.|+.|...|++|+
T Consensus       211 g~KSh~EcA~F---SPDgqyLvsgSvDGFiEVWny~~GKlr-----KDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs  282 (508)
T KOG0275|consen  211 GQKSHVECARF---SPDGQYLVSGSVDGFIEVWNYTTGKLR-----KDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS  282 (508)
T ss_pred             ccccchhheee---CCCCceEeeccccceeeeehhccchhh-----hhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence            45566777777   999999999999999999998877542     1222333445667889999999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          128 GDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      .||.|+||.+.+|.|++.|. .|...|+|+.|+.++ ..+++++.|.++++.-+..+++++                   
T Consensus       283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LK-------------------  342 (508)
T KOG0275|consen  283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLK-------------------  342 (508)
T ss_pred             cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHH-------------------
Confidence            99999999999999999996 899999999999988 889999999999999998776554                   


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC-C
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-N  285 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~  285 (512)
                              .+++|...|+...|.++|..+++++ .||+|++|+..+..+..++..+         +...+|.++..-| +
T Consensus       343 --------EfrGHsSyvn~a~ft~dG~~iisaS-sDgtvkvW~~KtteC~~Tfk~~---------~~d~~vnsv~~~PKn  404 (508)
T KOG0275|consen  343 --------EFRGHSSYVNEATFTDDGHHIISAS-SDGTVKVWHGKTTECLSTFKPL---------GTDYPVNSVILLPKN  404 (508)
T ss_pred             --------HhcCccccccceEEcCCCCeEEEec-CCccEEEecCcchhhhhhccCC---------CCcccceeEEEcCCC
Confidence                    6678999999999999999999866 6999999999999988776432         2345677777776 4


Q ss_pred             CCEEEEEecCCeEEEEEcccCCCCceEeeee-ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccC
Q 010390          286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDG  364 (512)
Q Consensus       286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~  364 (512)
                      ...++++...++|.+.++.   ...++.+.. ....+...+.+.+|.|.++.+.+.|+.++.|.+.+++. ..++.-|+.
T Consensus       405 peh~iVCNrsntv~imn~q---GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L-E~tl~VhEk  480 (508)
T KOG0275|consen  405 PEHFIVCNRSNTVYIMNMQ---GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL-ERTLPVHEK  480 (508)
T ss_pred             CceEEEEcCCCeEEEEecc---ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce-eeeeecccc
Confidence            5688899999999999974   344555543 23334566789999999999999999999999999877 467888999


Q ss_pred             CeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          365 EVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       365 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      .|..++-+|.. ++|++-+.||.+++|.
T Consensus       481 dvIGl~HHPHq-NllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  481 DVIGLTHHPHQ-NLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccccCccc-chhhhhcccchhhhcC
Confidence            99999999998 8999999999999995

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.8e-34  Score=242.57  Aligned_cols=256  Identities=14%  Similarity=0.222  Sum_probs=225.7

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      +..+.+++|.+.|.|+++.|.++++++|+.|++|+|||+.+|++..++.+|...|..+++++.. .++++++.|+.|+.|
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCW  220 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEEE
Confidence            4567788999999999999999999999999999999999999999999999999999999988 899999999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      |++..+.                           ++...+|-..|.|++.+|.-..++++| .|..+++||+++...+. 
T Consensus       221 DLe~nkv---------------------------IR~YhGHlS~V~~L~lhPTldvl~t~g-rDst~RvWDiRtr~~V~-  271 (460)
T KOG0285|consen  221 DLEYNKV---------------------------IRHYHGHLSGVYCLDLHPTLDVLVTGG-RDSTIRVWDIRTRASVH-  271 (460)
T ss_pred             echhhhh---------------------------HHHhccccceeEEEeccccceeEEecC-CcceEEEeeecccceEE-
Confidence            9986543                           335668889999999999999888855 89999999999988776 


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  338 (512)
                                .+.+|..+|.++.+.|....+++|+.|++|++||++.+.  ....+..|.  ..+.+++.+|....+|++
T Consensus       272 ----------~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk--t~~tlt~hk--ksvral~lhP~e~~fASa  337 (460)
T KOG0285|consen  272 ----------VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK--TMITLTHHK--KSVRALCLHPKENLFASA  337 (460)
T ss_pred             ----------EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc--eeEeeeccc--ceeeEEecCCchhhhhcc
Confidence                      588999999999999988899999999999999998743  344444443  447789999999999999


Q ss_pred             cCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          339 SSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      +.|. |+-|++..+... ..+.+|...|++++...|+  ++++|++.|.+.+||.++|-.-+..
T Consensus       338 s~dn-ik~w~~p~g~f~-~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  338 SPDN-IKQWKLPEGEFL-QNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             CCcc-ceeccCCccchh-hccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccc
Confidence            9886 999999988774 5589999999999999986  9999999999999999998766653

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.6e-34  Score=234.96  Aligned_cols=259  Identities=18%  Similarity=0.284  Sum_probs=219.5

Q ss_pred             ccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC-CCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390           98 KARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAE-KKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFA  176 (512)
Q Consensus        98 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  176 (512)
                      ..++..+.+|++.|+.+.|+|+|.+|++|+.|..|.+|++. ..+....+++|.++|..+.|.+++ +.+++++.|.+|+
T Consensus        37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVR  115 (338)
T ss_pred             cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-CEEEEecCCceEE
Confidence            34567788999999999999999999999999999999954 445677888999999999999998 9999999999999


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ  256 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~  256 (512)
                      .||+++++...                           +.+.|..-++++.-..-|..++++++.|+++++||+++....
T Consensus       116 ~wD~~tG~~~r---------------------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~  168 (338)
T KOG0265|consen  116 GWDAETGKRIR---------------------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI  168 (338)
T ss_pred             EEecccceeee---------------------------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence            99999876544                           566788889999988889999999999999999999987766


Q ss_pred             ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390          257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL  336 (512)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  336 (512)
                      .+.            ....+++++.|..++..+.+|+-|+.|++||++..  .....+.+|.  ..|+.+..+++|.++.
T Consensus       169 ~t~------------~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~--d~~~~lsGh~--DtIt~lsls~~gs~ll  232 (338)
T KOG0265|consen  169 KTF------------ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN--DGLYTLSGHA--DTITGLSLSRYGSFLL  232 (338)
T ss_pred             hcc------------ccceeEEEEEecccccceeeccccCceeeeccccC--cceEEeeccc--CceeeEEeccCCCccc
Confidence            432            23356999999999999999999999999999763  4566677775  5688999999999999


Q ss_pred             EecCCCCEEEEecCCCC---CCCceecccc----CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          337 SGSSDGNAYVWQVNKPQ---ADPIKLKSHD----GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       337 ~g~~dg~i~iw~~~~~~---~~~~~~~~h~----~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      +-+.|.++++||++-..   ..+..+.+|.    .....++|+|++ ..+.+|+.|..+++||.....++..
T Consensus       233 snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~~lyk  303 (338)
T KOG0265|consen  233 SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRRILYK  303 (338)
T ss_pred             cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeecccccEEEE
Confidence            99999999999997543   2244555653    345678899999 8999999999999999988765553

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=2.9e-35  Score=253.03  Aligned_cols=293  Identities=20%  Similarity=0.366  Sum_probs=244.9

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .....+.-|.+.+..|.|   -++...|++|+.|..|++|++.....           ..+.++.+..+.|+++.|.+++
T Consensus       166 ~~~~~ld~h~gev~~v~~---l~~sdtlatgg~Dr~Ik~W~v~~~k~-----------~~~~tLaGs~g~it~~d~d~~~  231 (459)
T KOG0288|consen  166 RALFVLDAHEGEVHDVEF---LRNSDTLATGGSDRIIKLWNVLGEKS-----------ELISTLAGSLGNITSIDFDSDN  231 (459)
T ss_pred             hhhhhhhccccccceeEE---ccCcchhhhcchhhhhhhhhcccchh-----------hhhhhhhccCCCcceeeecCCC
Confidence            344567779999999999   78888999999999999999876543           3477888889999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      .++++++.|+.+++|++...+...++.+|.+.|+++.|.... ..+++|+.|.+|++||+....+......         
T Consensus       232 ~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~---------  301 (459)
T KOG0288|consen  232 KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLP---------  301 (459)
T ss_pred             ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccc---------
Confidence            999999999999999999999999999999999999998766 5599999999999999987665543321         


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                         ...+..|...   ...+++|..|++|++||++........            ...+.|+++
T Consensus       302 -------------------~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv------------~~gg~vtSl  347 (459)
T KOG0288|consen  302 -------------------GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSV------------PLGGRVTSL  347 (459)
T ss_pred             -------------------cccccceEec---ceeeeecccccceEEEeccCCceeeEe------------ecCcceeeE
Confidence                               1234444443   445667889999999999988776532            222479999


Q ss_pred             EeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390          281 SQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK  360 (512)
Q Consensus       281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~  360 (512)
                      ..++++..|++++.|.++.+.|+++.+........+....+..+.+.|||++.|+++|+.||.|+||++.+++.......
T Consensus       348 ~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~  427 (459)
T KOG0288|consen  348 DLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL  427 (459)
T ss_pred             eeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence            99999999999999999999999987666666666666667788999999999999999999999999999887533333


Q ss_pred             cccC-CeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          361 SHDG-EVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       361 ~h~~-~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      .+.. .|++++|+|.| ..|++++.++.+.+|.
T Consensus       428 s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  428 STSNAAITSLSWNPSG-SGLLSADKQKAVTLWT  459 (459)
T ss_pred             CCCCcceEEEEEcCCC-chhhcccCCcceEecC
Confidence            3333 69999999999 8999999999999994

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.8e-34  Score=265.44  Aligned_cols=302  Identities=16%  Similarity=0.276  Sum_probs=251.3

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT  125 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  125 (512)
                      +......|.+++|   +|...++.++-..|.|++||.+-+             ..+..|..|.++|+.++|+|++.++++
T Consensus         5 fEskSsRvKglsF---HP~rPwILtslHsG~IQlWDYRM~-------------tli~rFdeHdGpVRgv~FH~~qplFVS   68 (1202)
T KOG0292|consen    5 FESKSSRVKGLSF---HPKRPWILTSLHSGVIQLWDYRMG-------------TLIDRFDEHDGPVRGVDFHPTQPLFVS   68 (1202)
T ss_pred             hhcccccccceec---CCCCCEEEEeecCceeeeehhhhh-------------hHHhhhhccCCccceeeecCCCCeEEe
Confidence            3445677889999   999999999999999999998755             348889999999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       126 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      |+.|-.|+||+..+.+++.++.+|-+.|..+.|++.. ..++++++|.+|+||+..+.+++.                  
T Consensus        69 GGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~ia------------------  129 (1202)
T KOG0292|consen   69 GGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIA------------------  129 (1202)
T ss_pred             cCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEE------------------
Confidence            9999999999999999999999999999999999987 799999999999999998765543                  


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC----------------C--Ccccc
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW----------------P--HAESS  267 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~----------------~--~~~~~  267 (512)
                               .+.+|...|+|..|+|....+++ ++.|.+|++||+...+.......                +  ..-..
T Consensus       130 ---------vltGHnHYVMcAqFhptEDlIVS-aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK  199 (1202)
T KOG0292|consen  130 ---------VLTGHNHYVMCAQFHPTEDLIVS-ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK  199 (1202)
T ss_pred             ---------EEecCceEEEeeccCCccceEEE-ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence                     67789999999999998888777 55899999999986543322111                0  00112


Q ss_pred             ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390          268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW  347 (512)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  347 (512)
                      ..+++|..+|+.++|+|.-.++++|+.|..|++|.+...+.-.+.+..+|.  ..+.++-|+|..++|++.+.|++|+||
T Consensus       200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~--nnVssvlfhp~q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHY--NNVSSVLFHPHQDLILSNSEDKSIRVW  277 (1202)
T ss_pred             eeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhccc--CCcceEEecCccceeEecCCCccEEEE
Confidence            357889999999999999999999999999999998765444455555654  457889999999999999999999999


Q ss_pred             ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          348 QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       348 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      |+.+... +.+++.-.+.-+.++-+|.. ++++ ++.|+-+.|+.++..+
T Consensus       278 Dm~kRt~-v~tfrrendRFW~laahP~l-NLfA-AgHDsGm~VFkleREr  324 (1202)
T KOG0292|consen  278 DMTKRTS-VQTFRRENDRFWILAAHPEL-NLFA-AGHDSGMIVFKLERER  324 (1202)
T ss_pred             ecccccc-eeeeeccCCeEEEEEecCCc-ceee-eecCCceEEEEEcccC
Confidence            9988766 46776667889999999987 5555 4556667888887443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.1e-34  Score=266.62  Aligned_cols=271  Identities=22%  Similarity=0.371  Sum_probs=212.8

Q ss_pred             eecC-CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCC------Cc-----------------cccc-------
Q 010390           44 VEHH-GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKL------PS-----------------FACH-------   92 (512)
Q Consensus        44 ~~~~-gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~------~~-----------------~~~~-------   92 (512)
                      .+.. .|.+.|.++.|   |+||+|||+||.||.|+||.+...+      ..                 ....       
T Consensus       260 Qe~~~ah~gaIw~mKF---S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~  336 (712)
T KOG0283|consen  260 QEISNAHKGAIWAMKF---SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT  336 (712)
T ss_pred             eccccccCCcEEEEEe---CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence            4455 79999999999   9999999999999999999976610      00                 0000       


Q ss_pred             -----------------cccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEE
Q 010390           93 -----------------RENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKS  155 (512)
Q Consensus        93 -----------------~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  155 (512)
                                       ......++++.+.||.+.|.+|.|+. ..+|++++.|.+|++|++...+|++.|. |.+.|+|
T Consensus       337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc  414 (712)
T KOG0283|consen  337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC  414 (712)
T ss_pred             cccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence                             00112457788999999999999995 4589999999999999999999999998 9999999


Q ss_pred             EEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEE
Q 010390          156 LCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSI  235 (512)
Q Consensus       156 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  235 (512)
                      ++|+|.+.++|++|+-||.||||++...+...                            +..-..-|++++|.|+|+..
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~----------------------------W~Dl~~lITAvcy~PdGk~a  466 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVD----------------------------WNDLRDLITAVCYSPDGKGA  466 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEe----------------------------ehhhhhhheeEEeccCCceE
Confidence            99999998999999999999999998655332                            22223579999999999988


Q ss_pred             EEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEee
Q 010390          236 ATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHF  314 (512)
Q Consensus       236 ~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~  314 (512)
                      ++ |+.+|.+++|++...+............  ....+ ..|+.+.+.|.. ..+++.+.|..|+|||.++  ...+..+
T Consensus       467 vI-Gt~~G~C~fY~t~~lk~~~~~~I~~~~~--Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--~~lv~Kf  540 (712)
T KOG0283|consen  467 VI-GTFNGYCRFYDTEGLKLVSDFHIRLHNK--KKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--KDLVHKF  540 (712)
T ss_pred             EE-EEeccEEEEEEccCCeEEEeeeEeeccC--ccccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccc--hhhhhhh
Confidence            87 7799999999999877654432211111  11222 279999998744 4688888999999999865  4456666


Q ss_pred             eeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390          315 SGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       315 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      .+......-....|+.||++|++|++|..|+||++....
T Consensus       541 KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  541 KGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             cccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            666555555678999999999999999999999986543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-33  Score=253.18  Aligned_cols=286  Identities=17%  Similarity=0.271  Sum_probs=247.6

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  124 (512)
                      .+..|.+.|.+|.+   +|...+++++-.+|.|.|||.++..             .++.+.-..-+|++..|-+..++++
T Consensus         8 k~~~rSdRVKsVd~---HPtePw~la~LynG~V~IWnyetqt-------------mVksfeV~~~PvRa~kfiaRknWiv   71 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDF---HPTEPWILAALYNGDVQIWNYETQT-------------MVKSFEVSEVPVRAAKFIARKNWIV   71 (794)
T ss_pred             HhhccCCceeeeec---CCCCceEEEeeecCeeEEEecccce-------------eeeeeeecccchhhheeeeccceEE
Confidence            34458899999999   9999999999999999999998763             3777888889999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      +|+.|..|+||+.++++.+..|..|.+.|.+++.+|.. .+++++++|-+|++||.+..                     
T Consensus        72 ~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~---------------------  129 (794)
T KOG0276|consen   72 TGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENE---------------------  129 (794)
T ss_pred             EecCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCc---------------------
Confidence            99999999999999999999999999999999999998 79999999999999999753                     


Q ss_pred             ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS  284 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (512)
                           ......+.+|...|++++|+|....-+++++.|++|++|.+.+.....           .+.+|..+|+|+.+-+
T Consensus       130 -----wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf-----------Tl~gHekGVN~Vdyy~  193 (794)
T KOG0276|consen  130 -----WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF-----------TLEGHEKGVNCVDYYT  193 (794)
T ss_pred             -----eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce-----------eeeccccCcceEEecc
Confidence                 233447789999999999999877777778899999999998877666           5789999999999987


Q ss_pred             CC--CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390          285 NG--VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH  362 (512)
Q Consensus       285 ~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h  362 (512)
                      .|  .+|++|+.|..|+|||..+  ..++.++.+|..+  +..+.|+|.-.++++|+.||+++||+..+-+.. .++.-.
T Consensus       194 ~gdkpylIsgaDD~tiKvWDyQt--k~CV~TLeGHt~N--vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE-~tLn~g  268 (794)
T KOG0276|consen  194 GGDKPYLISGADDLTIKVWDYQT--KSCVQTLEGHTNN--VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE-KTLNYG  268 (794)
T ss_pred             CCCcceEEecCCCceEEEeecch--HHHHHHhhccccc--ceEEEecCCCcEEEEecCCccEEEecCcceehh-hhhhcC
Confidence            54  6999999999999999876  5677888888644  777999999999999999999999998887653 455555


Q ss_pred             cCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390          363 DGEVTAVNWCPNEAGKIVTSSDDYTVRL  390 (512)
Q Consensus       363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~v  390 (512)
                      -+.|+|++-.+.+ ..++.|.+.|.|.+
T Consensus       269 leRvW~I~~~k~~-~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  269 LERVWCIAAHKGD-GKIAVGFDEGSVTV  295 (794)
T ss_pred             CceEEEEeecCCC-CeEEEeccCCcEEE
Confidence            6789999999887 77888887776543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.8e-33  Score=259.11  Aligned_cols=282  Identities=19%  Similarity=0.304  Sum_probs=224.2

Q ss_pred             ceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE
Q 010390           36 FTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC  115 (512)
Q Consensus        36 ~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  115 (512)
                      +...+.++-.+.+|.+||++|.|   +|.+.++++|+.|-.|+||+.+..++             +.++.+|-+-|+.+.
T Consensus        37 DYRM~tli~rFdeHdGpVRgv~F---H~~qplFVSGGDDykIkVWnYk~rrc-------------lftL~GHlDYVRt~~  100 (1202)
T KOG0292|consen   37 DYRMGTLIDRFDEHDGPVRGVDF---HPTQPLFVSGGDDYKIKVWNYKTRRC-------------LFTLLGHLDYVRTVF  100 (1202)
T ss_pred             hhhhhhHHhhhhccCCccceeee---cCCCCeEEecCCccEEEEEeccccee-------------hhhhccccceeEEee
Confidence            56667888899999999999999   99999999999999999999987644             888999999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          116 WIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       116 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      |++.-.+|++++.|.+|+||++.+++++..+.+|...|.|..|+|.. .++++++-|.+|++||+...+....... ...
T Consensus       101 FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e  178 (1202)
T KOG0292|consen  101 FHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPG-SLE  178 (1202)
T ss_pred             ccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCC-Cch
Confidence            99999999999999999999999999999999999999999999987 8999999999999999976554433222 000


Q ss_pred             eecccccc-ccccc--ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc
Q 010390          196 FSSAVVKG-AHLLS--QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET  272 (512)
Q Consensus       196 ~~~~~~~~-~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  272 (512)
                      ........ ..+..  ..--...+.+|+..|+-++|+|.-..+++ |++|..|++|.+...+.-..-         ...+
T Consensus       179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS-G~DDRqVKlWrmnetKaWEvD---------tcrg  248 (1202)
T KOG0292|consen  179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS-GADDRQVKLWRMNETKAWEVD---------TCRG  248 (1202)
T ss_pred             hhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe-cCCcceeeEEEeccccceeeh---------hhhc
Confidence            00000000 00111  11122357799999999999999887776 668999999998865543322         5788


Q ss_pred             cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       273 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      |...|.++-|+|...++++.+.|++|++||+..  ...+..+....  .....++.+|..+++++|-+.| +.+|.++
T Consensus       249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~k--Rt~v~tfrren--dRFW~laahP~lNLfAAgHDsG-m~VFkle  321 (1202)
T KOG0292|consen  249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK--RTSVQTFRREN--DRFWILAAHPELNLFAAGHDSG-MIVFKLE  321 (1202)
T ss_pred             ccCCcceEEecCccceeEecCCCccEEEEeccc--ccceeeeeccC--CeEEEEEecCCcceeeeecCCc-eEEEEEc
Confidence            999999999999999999999999999999865  34455554332  3456688899999888887555 5566554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=2.1e-33  Score=248.15  Aligned_cols=309  Identities=19%  Similarity=0.294  Sum_probs=236.4

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      ...+.+.+|+..|.++++   .|.|..|++|+.|..|++||++.....+..+      +.+...  ....|++++|++.|
T Consensus       158 shEi~l~hgtk~Vsal~~---Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~f------r~l~P~--E~h~i~sl~ys~Tg  226 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAV---DPSGARFVSGSLDYTVKFWDFQGMDASMRSF------RQLQPC--ETHQINSLQYSVTG  226 (641)
T ss_pred             cceEeccCCceEEEEeee---cCCCceeeeccccceEEEEecccccccchhh------hccCcc--cccccceeeecCCC
Confidence            445678899999999999   9999999999999999999998876544322      222222  33589999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeee------------ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390          121 TNILTASGDQTIKIWDAEKKKCT------------GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  188 (512)
                      ..|++.+.....+|+|-...+..            ..-++|...++|.+|+|.....|++++.||++++||++.......
T Consensus       227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q  306 (641)
T KOG0772|consen  227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ  306 (641)
T ss_pred             CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence            99998888899999995443322            223679999999999999989999999999999999987653221


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccc
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS  268 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  268 (512)
                      ...                     .....+..-+++.++|+++++.+++ |..||.|.+|+..+........        
T Consensus       307 Vik---------------------~k~~~g~Rv~~tsC~~nrdg~~iAa-gc~DGSIQ~W~~~~~~v~p~~~--------  356 (641)
T KOG0772|consen  307 VIK---------------------TKPAGGKRVPVTSCAWNRDGKLIAA-GCLDGSIQIWDKGSRTVRPVMK--------  356 (641)
T ss_pred             EEe---------------------eccCCCcccCceeeecCCCcchhhh-cccCCceeeeecCCcccccceE--------
Confidence            100                     0011133457899999999999776 6689999999986543322111        


Q ss_pred             ccccccc--CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC------
Q 010390          269 AKETRLH--GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS------  340 (512)
Q Consensus       269 ~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------  340 (512)
                      ....|..  .|+|+.|+++|++|++-+.|+++++||+++.+ .++....+....-.-+.++|||+.++|++|+.      
T Consensus       357 vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~  435 (641)
T KOG0772|consen  357 VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT  435 (641)
T ss_pred             eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEecccccCCCC
Confidence            3455555  79999999999999999999999999998754 45555554444444556899999999999864      


Q ss_pred             CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       341 dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      .|.+.+||..+.... +.+.-....|..+.|+|.- +.|+.|+.||.++|+-=
T Consensus       436 ~g~L~f~d~~t~d~v-~ki~i~~aSvv~~~WhpkL-NQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  436 AGTLFFFDRMTLDTV-YKIDISTASVVRCLWHPKL-NQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             CceEEEEeccceeeE-EEecCCCceEEEEeecchh-hheeeecCCCceEEEEC
Confidence            467999998877653 4454557789999999988 78888888999998643

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.2e-32  Score=221.13  Aligned_cols=251  Identities=19%  Similarity=0.301  Sum_probs=211.0

Q ss_pred             ceeccccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEeCCC---Ceeeecc-cCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390          100 RISDWVAHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEK---KKCTGAL-MGHTGSIKSLCSHPTNSDILVSGSRDGS  174 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~iwd~~~---~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~  174 (512)
                      .++.+++|.+.|..++|+|- |..|++|+.|+.|+||+...   -.+...+ .+|+..|.+++|+|.+ ++|++++.|.+
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t   84 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDAT   84 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccce
Confidence            36778899999999999997 88999999999999999874   3444444 4799999999999998 89999999999


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      +.||.-..++                         ......+.+|+..|.|++|+++|.+|++++ .|..|-||.+....
T Consensus        85 ~~Iw~k~~~e-------------------------fecv~~lEGHEnEVK~Vaws~sG~~LATCS-RDKSVWiWe~dedd  138 (312)
T KOG0645|consen   85 VVIWKKEDGE-------------------------FECVATLEGHENEVKCVAWSASGNYLATCS-RDKSVWIWEIDEDD  138 (312)
T ss_pred             EEEeecCCCc-------------------------eeEEeeeeccccceeEEEEcCCCCEEEEee-CCCeEEEEEecCCC
Confidence            9999866443                         233557889999999999999999999855 89999999998654


Q ss_pred             ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc-cCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390          255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL-QLDKGPIQHFSGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  333 (512)
                      ......        .++.|...|..+.|+|...+|++++.|++|++|+-. ...-..+..+.++..  .+.+++|++.|.
T Consensus       139 Efec~a--------VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~--TVW~~~F~~~G~  208 (312)
T KOG0645|consen  139 EFECIA--------VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN--TVWSLAFDNIGS  208 (312)
T ss_pred             cEEEEe--------eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc--eEEEEEecCCCc
Confidence            433221        678899999999999999999999999999999976 444456777777753  688999999999


Q ss_pred             EEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          334 HILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       334 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      .|++++.|++++||.....     ....|...++.+.|. +  ..|+|++.|+.|+++.-..
T Consensus       209 rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  209 RLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             eEEEecCCcceEeeeeccC-----cchhcccceEeeeec-c--cceEeccCCCEEEEEEecC
Confidence            9999999999999986532     234578899999998 4  4999999999999998763

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=3.5e-33  Score=231.62  Aligned_cols=309  Identities=19%  Similarity=0.313  Sum_probs=243.5

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcc-----ccccccccccceeccccCCCcEEEEEEec
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSF-----ACHRENAEKARISDWVAHQNAIFDLCWIK  118 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~h~~~V~~l~~s~  118 (512)
                      ..+..|..++.+-+|   |+||.++|+|+.|..|+|.|++......     ...........++++..|.++|+++.|+|
T Consensus       106 ~ylt~HK~~cR~aaf---s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAF---SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             EEEeecccceeeeee---CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            456679999999999   9999999999999999999987432111     01111122356788999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeee---ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          119 EDTNILTASGDQTIKIWDAEKKKCT---GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      ....|++|+.|++|+++|+......   ..++ ...+|.++.|+|.| .+|+.|..-.++++||+++.++.....     
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvsan-----  255 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSAN-----  255 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecC-----
Confidence            9999999999999999998765333   2333 44689999999988 899999999999999999876543221     


Q ss_pred             eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                         .-..|.+.|+++.+++.++..++ ++.||.|++||--+++++.++...+         ...
T Consensus       256 -------------------Pd~qht~ai~~V~Ys~t~~lYvT-aSkDG~IklwDGVS~rCv~t~~~AH---------~gs  306 (430)
T KOG0640|consen  256 -------------------PDDQHTGAITQVRYSSTGSLYVT-ASKDGAIKLWDGVSNRCVRTIGNAH---------GGS  306 (430)
T ss_pred             -------------------cccccccceeEEEecCCccEEEE-eccCCcEEeeccccHHHHHHHHhhc---------CCc
Confidence                               23467889999999999988877 6689999999999999887653222         234


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeecee---ceeEEEEEECCCCCEEEEecC-CCCEEEEecCC
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI---ESFYVKSEICPNASHILSGSS-DGNAYVWQVNK  351 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~  351 (512)
                      .|.+..|..+|+++++++.|..+++|.+.+  ...+..+.+...   ...-+...|+....+++.-.+ .+.+.-||.++
T Consensus       307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t--~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt  384 (430)
T KOG0640|consen  307 EVCSAVFTKNGKYILSSGKDSTVKLWEIST--GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART  384 (430)
T ss_pred             eeeeEEEccCCeEEeecCCcceeeeeeecC--CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccc
Confidence            699999999999999999999999999976  345555555421   122334567777888776554 46799999998


Q ss_pred             CCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          352 PQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       352 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      .......-.+|.+.+..+.-+|.+ --+++|++|-.+++|--.
T Consensus       385 adr~~l~slgHn~a~R~i~HSP~~-p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  385 ADRVALLSLGHNGAVRWIVHSPVE-PAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhhhhcccCCCCCceEEEeCCCC-Cceeeecccceeeeeeec
Confidence            876555667999999999999999 699999999999999643

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-32  Score=252.40  Aligned_cols=301  Identities=19%  Similarity=0.262  Sum_probs=249.9

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      .+..||...|.++++   |.|...+++|+ .+.|+||+..+.+.             ++++..  +-+.+..|.|.++++
T Consensus       367 i~~~GHR~dVRsl~v---S~d~~~~~Sga-~~SikiWn~~t~kc-------------iRTi~~--~y~l~~~Fvpgd~~I  427 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCV---SSDSILLASGA-GESIKIWNRDTLKC-------------IRTITC--GYILASKFVPGDRYI  427 (888)
T ss_pred             eeeccchhheeEEEe---ecCceeeeecC-CCcEEEEEccCcce-------------eEEecc--ccEEEEEecCCCceE
Confidence            567899999999999   88887888776 66899999987643             555543  489999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      ++|...|.+.++|+.+...+.+++.|.+.|++++.+|++ ..+++|+.|.+|++||..-.........            
T Consensus       428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~------------  494 (888)
T KOG0306|consen  428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQK------------  494 (888)
T ss_pred             EEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccc------------
Confidence            999999999999999999999999999999999999998 8999999999999999763221000000            


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                         ........+...-...|.|+.++||++++++ +--|.+|++|-+++.+-..           .+.+|.-+|.||.++
T Consensus       495 ---k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV-sLLdnTVkVyflDtlKFfl-----------sLYGHkLPV~smDIS  559 (888)
T KOG0306|consen  495 ---KVLSLKHTRTLELEDDVLCVSVSPDGKLLAV-SLLDNTVKVYFLDTLKFFL-----------SLYGHKLPVLSMDIS  559 (888)
T ss_pred             ---eeeeeccceEEeccccEEEEEEcCCCcEEEE-EeccCeEEEEEecceeeee-----------eecccccceeEEecc
Confidence               0000111122344678999999999999998 5589999999999988766           588999999999999


Q ss_pred             CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc
Q 010390          284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD  363 (512)
Q Consensus       284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~  363 (512)
                      ||++.+++|+.|.+|++|-+.-++  +-+.+.+|.  ..++++.|-|...++.+++.|+.|+-||-.+... +..+.+|.
T Consensus       560 ~DSklivTgSADKnVKiWGLdFGD--CHKS~fAHd--DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~-iq~L~~H~  634 (888)
T KOG0306|consen  560 PDSKLIVTGSADKNVKIWGLDFGD--CHKSFFAHD--DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE-IQKLDGHH  634 (888)
T ss_pred             CCcCeEEeccCCCceEEeccccch--hhhhhhccc--CceeEEEEcccceeEEEecCcceEEeechhhhhh-heeeccch
Confidence            999999999999999999986543  334444543  4478899999999999999999999999988776 57899999


Q ss_pred             CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ..|++++.+|+| .+++|+|.|.+|++|......
T Consensus       635 ~ev~cLav~~~G-~~vvs~shD~sIRlwE~tde~  667 (888)
T KOG0306|consen  635 SEVWCLAVSPNG-SFVVSSSHDKSIRLWERTDEI  667 (888)
T ss_pred             heeeeeEEcCCC-CeEEeccCCceeEeeeccCcc
Confidence            999999999999 899999999999999976643

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=5.4e-34  Score=250.24  Aligned_cols=264  Identities=16%  Similarity=0.271  Sum_probs=221.5

Q ss_pred             ccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCC-CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC
Q 010390           96 AEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEK-KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG  173 (512)
Q Consensus        96 ~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  173 (512)
                      .+.+.+..+.+|...|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|++++ ..|++++.|+
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~  280 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDR  280 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-Ceeeeeecce
Confidence            45567899999999999999999 889999999999999999876 89999999999999999999998 8999999999


Q ss_pred             cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL  253 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~  253 (512)
                      .|++||++++++...+..                            ...++|+.|+|++..++.+|+.|+.|+.||++++
T Consensus       281 ~lKlwDtETG~~~~~f~~----------------------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~  332 (503)
T KOG0282|consen  281 FLKLWDTETGQVLSRFHL----------------------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG  332 (503)
T ss_pred             eeeeeccccceEEEEEec----------------------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence            999999999987654422                            3478999999999777777889999999999999


Q ss_pred             cceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390          254 KAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  333 (512)
                      +.+.           ....|.+.|..+.|-++|+++++++.|+.++||+.+....  +..... ......-++..+|+++
T Consensus       333 kvvq-----------eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~--ik~i~~-~~~hsmP~~~~~P~~~  398 (503)
T KOG0282|consen  333 KVVQ-----------EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP--IKNIAD-PEMHTMPCLTLHPNGK  398 (503)
T ss_pred             HHHH-----------HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc--chhhcc-hhhccCcceecCCCCC
Confidence            8765           5777889999999999999999999999999999865322  111111 1112244688999999


Q ss_pred             EEEEecCCCCEEEEecCCCCC--CCceecccc--CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          334 HILSGSSDGNAYVWQVNKPQA--DPIKLKSHD--GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       334 ~l~~g~~dg~i~iw~~~~~~~--~~~~~~~h~--~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      ++++-+.|+.|.+|.+...-.  ....+.+|.  +.-..+.||||| .+|++|+.||.+.+||..+-+++..+.
T Consensus       399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl~~~lk  471 (503)
T KOG0282|consen  399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTKLVSKLK  471 (503)
T ss_pred             eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhhhhhccc
Confidence            999999999999998764322  234677884  567788999999 899999999999999999888776533

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-32  Score=219.84  Aligned_cols=256  Identities=16%  Similarity=0.245  Sum_probs=216.1

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      +....+..|+++|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.++ ..|++|+.|..+.+|
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVW   86 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEE
Confidence            3467788999999999999999999999999999999999999999999999999999999887 899999999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      |+++++..                           +++.+|...|+.+.|+.+...+++ |+.|..+++||.++......
T Consensus        87 DV~TGkv~---------------------------Rr~rgH~aqVNtV~fNeesSVv~S-gsfD~s~r~wDCRS~s~ePi  138 (307)
T KOG0316|consen   87 DVNTGKVD---------------------------RRFRGHLAQVNTVRFNEESSVVAS-GSFDSSVRLWDCRSRSFEPI  138 (307)
T ss_pred             EcccCeee---------------------------eecccccceeeEEEecCcceEEEe-ccccceeEEEEcccCCCCcc
Confidence            99987654                           377899999999999988877766 77999999999998665433


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  338 (512)
                      +         .+......|.++...  +..+++|+.||+++.||++.+.  ....+.    ..++++++|+++++..+++
T Consensus       139 Q---------ildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~--l~sDy~----g~pit~vs~s~d~nc~La~  201 (307)
T KOG0316|consen  139 Q---------ILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT--LSSDYF----GHPITSVSFSKDGNCSLAS  201 (307)
T ss_pred             c---------hhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce--eehhhc----CCcceeEEecCCCCEEEEe
Confidence            3         456666788888885  4579999999999999998643  222222    3457889999999999999


Q ss_pred             cCCCCEEEEecCCCCCCCceeccccCCe--EEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          339 SSDGNAYVWQVNKPQADPIKLKSHDGEV--TAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~~~~~~~h~~~v--~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      +.|+++++.|-.+++. +..+.+|...=  ...+++... ..+++|++||.|++||+.+...+..+
T Consensus       202 ~l~stlrLlDk~tGkl-L~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~  265 (307)
T KOG0316|consen  202 SLDSTLRLLDKETGKL-LKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDETQISKL  265 (307)
T ss_pred             eccceeeecccchhHH-HHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccceeeeee
Confidence            9999999999999887 57888997643  344566655 79999999999999999998866543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.2e-32  Score=261.83  Aligned_cols=256  Identities=22%  Similarity=0.338  Sum_probs=215.7

Q ss_pred             CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC
Q 010390          107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS  184 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  184 (512)
                      |...|.++.|+++|+.|++++.|+.+++|+..+.+  ....+.+|...|.+++|+|++ .++++++.|++|++||+... 
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~-  235 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDD-  235 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-cEEEEecCCceEEEeeccCC-
Confidence            37899999999999999999999999999998777  777888999999999999998 89999999999999999432 


Q ss_pred             CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390          185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA  264 (512)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~  264 (512)
                                               ......+.+|...|++++|+|++ .++++|+.|++|++||+++++...       
T Consensus       236 -------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~-------  282 (456)
T KOG0266|consen  236 -------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVR-------  282 (456)
T ss_pred             -------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEE-------
Confidence                                     23344677999999999999999 555557789999999999977766       


Q ss_pred             cccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390          265 ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA  344 (512)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  344 (512)
                          .+..|..+|++++|++++.+|++++.|+.|++||+.++.......+.+......+..++|+|++.+++++..|+.+
T Consensus       283 ----~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~  358 (456)
T KOG0266|consen  283 ----KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTL  358 (456)
T ss_pred             ----eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeE
Confidence                5888999999999999999999999999999999977553323344443322267889999999999999999999


Q ss_pred             EEEecCCCCCCCceeccccCC---eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          345 YVWQVNKPQADPIKLKSHDGE---VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       345 ~iw~~~~~~~~~~~~~~h~~~---v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      ++||+..... ...+.+|...   +.+...++.+ .++++|+.|+.|++||+.++..++...
T Consensus       359 ~~w~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~  418 (456)
T KOG0266|consen  359 KLWDLRSGKS-VGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLE  418 (456)
T ss_pred             EEEEccCCcc-eeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccchhhhhc
Confidence            9999998876 4677777664   4444556777 899999999999999999987666543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-33  Score=239.55  Aligned_cols=298  Identities=20%  Similarity=0.317  Sum_probs=240.6

Q ss_pred             eeEeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      +++..+.||.+.|.|++=   +|+. ..+|+|+.||.|+|||+....             ...++++|.+.|..|++.. 
T Consensus        57 PFv~~L~gHrdGV~~lak---hp~~ls~~aSGs~DG~VkiWnlsqR~-------------~~~~f~AH~G~V~Gi~v~~-  119 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAK---HPNKLSTVASGSCDGEVKIWNLSQRE-------------CIRTFKAHEGLVRGICVTQ-  119 (433)
T ss_pred             cchhhccccccccchhhc---CcchhhhhhccccCceEEEEehhhhh-------------hhheeecccCceeeEEecc-
Confidence            456678999999999999   8877 789999999999999997653             3888999999999999975 


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                       ..+++++.|.+|+.|.++. .+..++.+ ...+..|.-+..+ +.++|+|.  .|.|||......+.            
T Consensus       120 -~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~------------  181 (433)
T KOG0268|consen  120 -TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVS------------  181 (433)
T ss_pred             -cceEEecCCcceeeeeccC-Ccceeeec-ccccccccccccc-ccccccCc--eeeecccccCCccc------------
Confidence             6789999999999999865 46666653 3467777776655 78999986  59999987554433            


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                     .+......|.++.|+|....++.++..|+.|.+||+++...+......            ..-+.
T Consensus       182 ---------------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------------mRTN~  234 (433)
T KOG0268|consen  182 ---------------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------------MRTNT  234 (433)
T ss_pred             ---------------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee------------ccccc
Confidence                           333445689999999999988888878999999999998876543221            23567


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      ++|+|.+..+++++.|..++.||++... .++....+|.  +.++.++|||.|+-+++|+.|.+|+||..+.+...-...
T Consensus       235 IswnPeafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhv--sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh  311 (433)
T KOG0268|consen  235 ICWNPEAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHV--SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH  311 (433)
T ss_pred             eecCccccceeeccccccceehhhhhhc-ccchhhcccc--eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh
Confidence            9999988899999999999999998764 4555555553  568899999999999999999999999998765432222


Q ss_pred             ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccC
Q 010390          360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSP  404 (512)
Q Consensus       360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  404 (512)
                      ...-..|.++.|+-|. +++++||+|+.|++|.-...+.+..+.+
T Consensus       312 tkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka~Aseklgv~t~  355 (433)
T KOG0268|consen  312 TKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWKAKASEKLGVITP  355 (433)
T ss_pred             HhhhheeeEEEEeccc-cEEEecCCCcceeeeecchhhhcCCCCh
Confidence            2223579999999999 9999999999999999888777666544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=9.3e-32  Score=217.95  Aligned_cols=288  Identities=19%  Similarity=0.259  Sum_probs=232.9

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTN  122 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~  122 (512)
                      .+.++|.++|.+|+|   +.+|..||+|+.|+.+.+|+++....           ..-....+|.+.|-.++|+| ....
T Consensus        14 r~~~~~~~~v~Sv~w---n~~g~~lasgs~dktv~v~n~e~~r~-----------~~~~~~~gh~~svdql~w~~~~~d~   79 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAW---NCDGTKLASGSFDKTVSVWNLERDRF-----------RKELVYRGHTDSVDQLCWDPKHPDL   79 (313)
T ss_pred             HHhhhhhhcceEEEE---cccCceeeecccCCceEEEEecchhh-----------hhhhcccCCCcchhhheeCCCCCcc
Confidence            567899999999999   89999999999999999999976532           12334679999999999998 6678


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      +++++.|.+|++||+..++++..+....+.++ +.|+|++ .+++.++.|..|.+.|.++.+.....             
T Consensus        80 ~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~-------------  144 (313)
T KOG1407|consen   80 FATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEE-------------  144 (313)
T ss_pred             eEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCC-CEEEEecCcccEEEEEecccceeehh-------------
Confidence            99999999999999999999998876665554 6799998 89999999999999999876654433             


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ  282 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (512)
                                     .....+.-++|+.++..++.+. -.|.|.|......+.+.           ....|.....|+.|
T Consensus       145 ---------------~~~~e~ne~~w~~~nd~Fflt~-GlG~v~ILsypsLkpv~-----------si~AH~snCicI~f  197 (313)
T KOG1407|consen  145 ---------------QFKFEVNEISWNNSNDLFFLTN-GLGCVEILSYPSLKPVQ-----------SIKAHPSNCICIEF  197 (313)
T ss_pred             ---------------cccceeeeeeecCCCCEEEEec-CCceEEEEecccccccc-----------ccccCCcceEEEEE
Confidence                           2233677888886666666544 37999998887666554           57888889999999


Q ss_pred             CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390          283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH  362 (512)
Q Consensus       283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h  362 (512)
                      +|+|+++++|+.|..+.+||+...  ...+.+...  .-+|..+.||.+|++||+|++|..|-|=++.++...  .-..+
T Consensus       198 ~p~GryfA~GsADAlvSLWD~~EL--iC~R~isRl--dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~--~eI~~  271 (313)
T KOG1407|consen  198 DPDGRYFATGSADALVSLWDVDEL--ICERCISRL--DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV--WEIPC  271 (313)
T ss_pred             CCCCceEeeccccceeeccChhHh--hhheeeccc--cCceEEEEeccCcceeeccCccceEEeEecccCCeE--EEeec
Confidence            999999999999999999998653  233333333  345778999999999999999999999999998774  33357


Q ss_pred             cCCeEEEEeCCCCCCeEEEEeCC---------CcEEEEeCC
Q 010390          363 DGEVTAVNWCPNEAGKIVTSSDD---------YTVRLWSLE  394 (512)
Q Consensus       363 ~~~v~~v~~~~~~~~~l~s~~~d---------g~i~vwd~~  394 (512)
                      +++...|+|+|.. .+||-+++|         |.++++-+.
T Consensus       272 ~~~t~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  272 EGPTFTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             cCCceeEEecCCC-ceeeEEecCCCCccccccceeEEecCC
Confidence            8999999999998 688877655         456665543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.3e-33  Score=235.22  Aligned_cols=238  Identities=19%  Similarity=0.363  Sum_probs=199.9

Q ss_pred             CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390          107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      ....|+|+.+  |...+++|..|++|+|||.++..+...+.+|++.|.|+.|..   ..+++|+.|.+|++||+++++.+
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchh
Confidence            4568999998  677899999999999999999999999999999999999964   79999999999999999988766


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                      .                           .+..|...|..+.|+.  .++++ ++.|..+.+||+.....+....      
T Consensus       271 ~---------------------------tlihHceaVLhlrf~n--g~mvt-cSkDrsiaVWdm~sps~it~rr------  314 (499)
T KOG0281|consen  271 N---------------------------TLIHHCEAVLHLRFSN--GYMVT-CSKDRSIAVWDMASPTDITLRR------  314 (499)
T ss_pred             h---------------------------HHhhhcceeEEEEEeC--CEEEE-ecCCceeEEEeccCchHHHHHH------
Confidence            5                           4557778899998863  35555 6689999999998766432211      


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV  346 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  346 (512)
                        .+.+|...|+.+.|+.  +++++++.|.+|++|++.+  ...+..+.+|.-.  +-  +.--.++++++|+.|.+|++
T Consensus       315 --VLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st--~efvRtl~gHkRG--IA--ClQYr~rlvVSGSSDntIRl  384 (499)
T KOG0281|consen  315 --VLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTST--CEFVRTLNGHKRG--IA--CLQYRDRLVVSGSSDNTIRL  384 (499)
T ss_pred             --HHhhhhhheeeecccc--ceEEEecCCceEEEEeccc--eeeehhhhccccc--ce--ehhccCeEEEecCCCceEEE
Confidence              5788999999999964  4999999999999999876  4456677777643  32  33356899999999999999


Q ss_pred             EecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          347 WQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       347 w~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      ||+..+.+ +..+.||+.-|.++.|..   ..+++|+.||+|+|||+..+.-.
T Consensus       385 wdi~~G~c-LRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  385 WDIECGAC-LRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             EeccccHH-HHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCC
Confidence            99999987 588999999999999964   68999999999999999987644

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-31  Score=219.61  Aligned_cols=291  Identities=20%  Similarity=0.330  Sum_probs=229.3

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA  126 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~  126 (512)
                      ....++|.+|.|   +++|.+|++++.|..++|||..++..             +.++..++-.|..++|......++.+
T Consensus        11 ~~~~~~i~sl~f---s~~G~~litss~dDsl~LYd~~~g~~-------------~~ti~skkyG~~~~~Fth~~~~~i~s   74 (311)
T KOG1446|consen   11 RETNGKINSLDF---SDDGLLLITSSEDDSLRLYDSLSGKQ-------------VKTINSKKYGVDLACFTHHSNTVIHS   74 (311)
T ss_pred             ccCCCceeEEEe---cCCCCEEEEecCCCeEEEEEcCCCce-------------eeEeecccccccEEEEecCCceEEEc
Confidence            335778999999   99999999999999999999987744             66777777889999998877777766


Q ss_pred             eC--CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          127 SG--DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       127 ~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      +.  |.+|+.-++.+.+.++.+.||...|++|+.+|-+ ..+++++.|++|++||++..++.....              
T Consensus        75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~--------------  139 (311)
T KOG1446|consen   75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN--------------  139 (311)
T ss_pred             cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe--------------
Confidence            66  8999999999999999999999999999999988 899999999999999999766543221              


Q ss_pred             ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc-eecccCCCccccccccccccCeeEEEeC
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA-QITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                                     ...-..++|.|+|-.++++. ....|++||++.... +.....       .........+.|.|+
T Consensus       140 ---------------~~~~pi~AfDp~GLifA~~~-~~~~IkLyD~Rs~dkgPF~tf~-------i~~~~~~ew~~l~FS  196 (311)
T KOG1446|consen  140 ---------------LSGRPIAAFDPEGLIFALAN-GSELIKLYDLRSFDKGPFTTFS-------ITDNDEAEWTDLEFS  196 (311)
T ss_pred             ---------------cCCCcceeECCCCcEEEEec-CCCeEEEEEecccCCCCceeEc-------cCCCCccceeeeEEc
Confidence                           12344678999998888755 345999999997532 221110       111334568899999


Q ss_pred             CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceece-eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc-
Q 010390          284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIES-FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS-  361 (512)
Q Consensus       284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~-  361 (512)
                      |||++|+.+...+.+++.|.-.+.  ....+..+.... .....+|+||++++++|+.||+|++|+++++... ..+.+ 
T Consensus       197 ~dGK~iLlsT~~s~~~~lDAf~G~--~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v-~~~~~~  273 (311)
T KOG1446|consen  197 PDGKSILLSTNASFIYLLDAFDGT--VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV-AVLRGP  273 (311)
T ss_pred             CCCCEEEEEeCCCcEEEEEccCCc--EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe-eEecCC
Confidence            999999999999999999976654  444444443332 2256789999999999999999999999998875 45555 


Q ss_pred             ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          362 HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       362 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +.+++.++.|+|.- .+++|  .+..+.+|=....+
T Consensus       274 ~~~~~~~~~fnP~~-~mf~s--a~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  274 NGGPVSCVRFNPRY-AMFVS--ASSNLVFWLPDEDA  306 (311)
T ss_pred             CCCCccccccCCce-eeeee--cCceEEEEeccccc
Confidence            78999999999965 44544  45678899766443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-32  Score=246.91  Aligned_cols=277  Identities=17%  Similarity=0.216  Sum_probs=237.4

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL  180 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  180 (512)
                      .+.+..|...|.++.|+|...+++++-.+|.|.|||.++...+..+.-..-+|.+..|-+.. +.+++|++|..|++|+.
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEec
Confidence            34556699999999999999999999999999999999999999998888899999999977 89999999999999999


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA  260 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~  260 (512)
                      ++.+...                           .+.+|...|.+++.||...+++++ ++|-.|++||.+..-....  
T Consensus        85 nt~ekV~---------------------------~FeAH~DyIR~iavHPt~P~vLts-SDDm~iKlW~we~~wa~~q--  134 (794)
T KOG0276|consen   85 NTGEKVK---------------------------TFEAHSDYIRSIAVHPTLPYVLTS-SDDMTIKLWDWENEWACEQ--  134 (794)
T ss_pred             ccceeeE---------------------------EeeccccceeeeeecCCCCeEEec-CCccEEEEeeccCceeeee--
Confidence            9776544                           677899999999999999999985 4899999999987544332  


Q ss_pred             CCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC--CCEEEE
Q 010390          261 WPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN--ASHILS  337 (512)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~  337 (512)
                              .+++|.+-|.+++|.| |.+.+++++.|++|++|.+..  ..+..++.+|.  ..+.++.|-+.  ..+|++
T Consensus       135 --------tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs--~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIs  202 (794)
T KOG0276|consen  135 --------TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS--PHPNFTLEGHE--KGVNCVDYYTGGDKPYLIS  202 (794)
T ss_pred             --------EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC--CCCceeeeccc--cCcceEEeccCCCcceEEe
Confidence                    6899999999999999 567999999999999999865  55677777775  44777888764  469999


Q ss_pred             ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccc
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPST  417 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  417 (512)
                      |++|.+|+|||.++..+ +.++.||...|..+.|+|.- .+++|||.||+++||+-.+-+...++  .....++|++...
T Consensus       203 gaDD~tiKvWDyQtk~C-V~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tL--n~gleRvW~I~~~  278 (794)
T KOG0276|consen  203 GADDLTIKVWDYQTKSC-VQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTL--NYGLERVWCIAAH  278 (794)
T ss_pred             cCCCceEEEeecchHHH-HHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCcceehhhhh--hcCCceEEEEeec
Confidence            99999999999999887 58999999999999999998 69999999999999999988877763  3345678887755


Q ss_pred             hhccccc
Q 010390          418 ECRKLFM  424 (512)
Q Consensus       418 ~~~~~~~  424 (512)
                      .....++
T Consensus       279 k~~~~i~  285 (794)
T KOG0276|consen  279 KGDGKIA  285 (794)
T ss_pred             CCCCeEE
Confidence            5444443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.3e-31  Score=257.86  Aligned_cols=312  Identities=18%  Similarity=0.227  Sum_probs=242.1

Q ss_pred             cCCcceEEEEEecCCCcEEEEee--CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSD--EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      +..|++|..   +|||..+|||+  .||.++||+.+.-.........+ -.+.+.+...|.+.|+|+.|+|||++||+|+
T Consensus        13 ~~~IfSIdv---~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~-l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen   13 EKSIFSIDV---HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN-LPKHLCTMDDHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             CeeEEEEEe---cCCceeEecCCccccccceeeccccccchhhhhhcc-cchhheeeccccCceeEEEECCCCCeEeecc
Confidence            456899999   99999999999  99999999975432222111111 2355777889999999999999999999999


Q ss_pred             CCCcEEEEeCCC------------------CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390          128 GDQTIKIWDAEK------------------KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN  189 (512)
Q Consensus       128 ~dg~i~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  189 (512)
                      +|+.|.||+...                  .+++..+.+|...|..++|+|++ .+|++++.|++|.+||..+.+.    
T Consensus        89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~----  163 (942)
T KOG0973|consen   89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFEL----  163 (942)
T ss_pred             CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEcccccee----
Confidence            999999998762                  13567789999999999999987 9999999999999999986543    


Q ss_pred             cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390          190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA  269 (512)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  269 (512)
                                             ...+.+|.+.|..+.|.|-|+++++-+ .|++|++|++.+.........+..     
T Consensus       164 -----------------------~~vl~~H~s~VKGvs~DP~Gky~ASqs-dDrtikvwrt~dw~i~k~It~pf~-----  214 (942)
T KOG0973|consen  164 -----------------------LKVLRGHQSLVKGVSWDPIGKYFASQS-DDRTLKVWRTSDWGIEKSITKPFE-----  214 (942)
T ss_pred             -----------------------eeeeecccccccceEECCccCeeeeec-CCceEEEEEcccceeeEeeccchh-----
Confidence                                   336778999999999999999999866 799999999887555544333321     


Q ss_pred             ccccccCeeEEEeCCCCCEEEEEec----CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-------------C
Q 010390          270 KETRLHGISSLSQDSNGVFLTASCM----DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-------------A  332 (512)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-------------~  332 (512)
                      ......-+..+.|+|||.+|++...    -.++.|.+-.+  ...-..+-+|.  ..+.++.|+|.             .
T Consensus       215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t--Wk~~~~LvGH~--~p~evvrFnP~lfe~~~~ng~~~~~  290 (942)
T KOG0973|consen  215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT--WKVDKDLVGHS--APVEVVRFNPKLFERNNKNGTSTQP  290 (942)
T ss_pred             hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC--ceeeeeeecCC--CceEEEEeChHHhccccccCCccCC
Confidence            2223345889999999999998753    23677776432  33344556665  35777888871             1


Q ss_pred             C----EEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccC
Q 010390          333 S----HILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSP  404 (512)
Q Consensus       333 ~----~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  404 (512)
                      +    .+|+|+.|++|-||.....+.......-....|.+++|+||| ..|+.+|.||+|.+..++..+.-.....
T Consensus       291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG-~~LfacS~DGtV~~i~Fee~ElG~~ls~  365 (942)
T KOG0973|consen  291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDG-FSLFACSLDGTVALIHFEEKELGVALSE  365 (942)
T ss_pred             CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCC-CeEEEEecCCeEEEEEcchHHhCcccCh
Confidence            1    578999999999999976665433333346789999999999 8999999999999999998776655443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.5e-30  Score=236.71  Aligned_cols=256  Identities=23%  Similarity=0.435  Sum_probs=211.9

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL  180 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  180 (512)
                      +.++++|.+.|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|+|++ ..+++++.||.|++||+
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDL   80 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEc
Confidence            45577999999999999999999999999999999999988888888899999999999987 89999999999999999


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA  260 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~  260 (512)
                      ..++...                           .+..|...+.++.|++++..+++ ++.++.|.+||+++.+...   
T Consensus        81 ~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~---  129 (289)
T cd00200          81 ETGECVR---------------------------TLTGHTSYVSSVAFSPDGRILSS-SSRDKTIKVWDVETGKCLT---  129 (289)
T ss_pred             CcccceE---------------------------EEeccCCcEEEEEEcCCCCEEEE-ecCCCeEEEEECCCcEEEE---
Confidence            8653222                           33456678999999999766665 5469999999999766544   


Q ss_pred             CCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC
Q 010390          261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS  340 (512)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~  340 (512)
                              ....|...+.++.|+|++.++++++.++.|++||++...  ....+..+  ...+.+++|+|+++.+++++.
T Consensus       130 --------~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~  197 (289)
T cd00200         130 --------TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGH--TGEVNSVAFSPDGEKLLSSSS  197 (289)
T ss_pred             --------EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--cceeEecC--ccccceEEECCCcCEEEEecC
Confidence                    234566789999999999999988889999999987533  33333333  345778999999999999999


Q ss_pred             CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       341 dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      ++.|++||+...+. ...+..|...|.+++|+|++ .++++++.||.|++||+.+++....+
T Consensus       198 ~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~~~~  257 (289)
T cd00200         198 DGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQTL  257 (289)
T ss_pred             CCcEEEEECCCCce-ecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeEEEc
Confidence            99999999987655 35566888899999999997 88888888999999999987765543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4e-31  Score=224.27  Aligned_cols=281  Identities=14%  Similarity=0.205  Sum_probs=219.7

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL  180 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  180 (512)
                      +..|..|+..|.+++.+|+.++++||+.|..-.+|++.++.....+.+|+..|+++.|+.++ .+||||+.+|.|+||+.
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKV  135 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEc
Confidence            67889999999999999999999999999999999999999999999999999999999998 99999999999999999


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA  260 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~  260 (512)
                      .++......                           ...-..+.=+.|+|.+..+++ |+.||.+.+|.+.+.....   
T Consensus       136 stg~~~~~~---------------------------~~e~~dieWl~WHp~a~illA-G~~DGsvWmw~ip~~~~~k---  184 (399)
T KOG0296|consen  136 STGGEQWKL---------------------------DQEVEDIEWLKWHPRAHILLA-GSTDGSVWMWQIPSQALCK---  184 (399)
T ss_pred             ccCceEEEe---------------------------ecccCceEEEEecccccEEEe-ecCCCcEEEEECCCcceee---
Confidence            877643322                           122346777889997776665 8899999999999863332   


Q ss_pred             CCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee---------------------ce-
Q 010390          261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG---------------------CR-  318 (512)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------~~-  318 (512)
                              .+.+|..++++=.|.|+|+.++++..||+|++||..+...  +..+.+                     .. 
T Consensus       185 --------v~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p--~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e  254 (399)
T KOG0296|consen  185 --------VMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP--LHKITQAEGLELPCISLNLAGSTLTKGNSE  254 (399)
T ss_pred             --------EecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce--eEEecccccCcCCccccccccceeEeccCC
Confidence                    4778889999999999999999999999999999866422  221110                     00 


Q ss_pred             ---------------------------ecee---EEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE
Q 010390          319 ---------------------------IESF---YVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA  368 (512)
Q Consensus       319 ---------------------------~~~~---~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~  368 (512)
                                                 .+..   +-.+.++..-.+.|+|+-||+|.|||+.....  +..-.|...|+.
T Consensus       255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--R~~c~he~~V~~  332 (399)
T KOG0296|consen  255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--RHICEHEDGVTK  332 (399)
T ss_pred             ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh--heeccCCCceEE
Confidence                                       0000   00122333445778999999999999987654  455679999999


Q ss_pred             EEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccC
Q 010390          369 VNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQI  448 (512)
Q Consensus       369 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  448 (512)
                      +.|-+ . .+|++++.||.|+.||.++|+++.++.-                        +...+- +++++|+.+++..
T Consensus       333 l~w~~-t-~~l~t~c~~g~v~~wDaRtG~l~~~y~G------------------------H~~~Il-~f~ls~~~~~vvT  385 (399)
T KOG0296|consen  333 LKWLN-T-DYLLTACANGKVRQWDARTGQLKFTYTG------------------------HQMGIL-DFALSPQKRLVVT  385 (399)
T ss_pred             EEEcC-c-chheeeccCceEEeeeccccceEEEEec------------------------Cchhee-EEEEcCCCcEEEE
Confidence            99999 4 6999999999999999999998775332                        222222 6777777777665


Q ss_pred             CCCC
Q 010390          449 NSSD  452 (512)
Q Consensus       449 ~~~~  452 (512)
                      .+..
T Consensus       386 ~s~D  389 (399)
T KOG0296|consen  386 VSDD  389 (399)
T ss_pred             ecCC
Confidence            5443

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.7e-30  Score=245.04  Aligned_cols=291  Identities=14%  Similarity=0.146  Sum_probs=206.1

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCC
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKK  140 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~  140 (512)
                      ++|+..+++++.+.....|+...+..................+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++
T Consensus        29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~  108 (493)
T PTZ00421         29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE  108 (493)
T ss_pred             cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence            677666777777777778876554321111000000011234679999999999999 8899999999999999999765


Q ss_pred             -------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccc
Q 010390          141 -------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRV  213 (512)
Q Consensus       141 -------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (512)
                             +++..+.+|...|.+++|+|.+.++|++++.|++|++||++++...                           
T Consensus       109 ~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~---------------------------  161 (493)
T PTZ00421        109 GLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV---------------------------  161 (493)
T ss_pred             ccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE---------------------------
Confidence                   3466788999999999999987689999999999999999865422                           


Q ss_pred             eecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC-eeEEEeCCCCCEEEEE
Q 010390          214 SRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG-ISSLSQDSNGVFLTAS  292 (512)
Q Consensus       214 ~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~  292 (512)
                      ..+..|...|.+++|+|++..+++ ++.|+.|++||+++++....           ...|... +..+.|.+++..++++
T Consensus       162 ~~l~~h~~~V~sla~spdG~lLat-gs~Dg~IrIwD~rsg~~v~t-----------l~~H~~~~~~~~~w~~~~~~ivt~  229 (493)
T PTZ00421        162 EVIKCHSDQITSLEWNLDGSLLCT-TSKDKKLNIIDPRDGTIVSS-----------VEAHASAKSQRCLWAKRKDLIITL  229 (493)
T ss_pred             EEEcCCCCceEEEEEECCCCEEEE-ecCCCEEEEEECCCCcEEEE-----------EecCCCCcceEEEEcCCCCeEEEE
Confidence            234567889999999999998887 45899999999998776542           3344433 4467788887777765


Q ss_pred             e----cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec-CCCCEEEEecCCCCCCCceeccccCCeE
Q 010390          293 C----MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS-SDGNAYVWQVNKPQADPIKLKSHDGEVT  367 (512)
Q Consensus       293 ~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~  367 (512)
                      +    .|+.|++||+++... +......+ ....+....|++++++|++|+ .|+.|++||+.++.........+..++.
T Consensus       230 G~s~s~Dr~VklWDlr~~~~-p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~  307 (493)
T PTZ00421        230 GCSKSQQRQIMLWDTRKMAS-PYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK  307 (493)
T ss_pred             ecCCCCCCeEEEEeCCCCCC-ceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCc
Confidence            4    478999999976543 22222211 123344567999999998887 5999999999987653222233556788


Q ss_pred             EEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          368 AVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      +++|.|..   .+=...--..|++.+...
T Consensus       308 g~~~~pk~---~~dv~~~Ei~r~~~l~~~  333 (493)
T PTZ00421        308 GLCMMPKW---SLDTRKCEIARFYALTYH  333 (493)
T ss_pred             ceEecccc---cccccceeeeEEEEecCC
Confidence            99999854   122222234567776543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-31  Score=226.72  Aligned_cols=294  Identities=17%  Similarity=0.213  Sum_probs=227.4

Q ss_pred             ccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390           98 KARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS  174 (512)
Q Consensus        98 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  174 (512)
                      .+..+.+..|.++|.-+.||++|++||+++.|.+..||++...   +...++.+|..+|..+.|+|++ ++|++|+.|..
T Consensus       214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~  292 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEV  292 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHh
Confidence            3446778899999999999999999999999999999997654   4478889999999999999998 89999999999


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      +.+||+.++........                          ++...+.+++|.||+..+++ |+.|+.+..||++...
T Consensus       293 ~~lwDv~tgd~~~~y~~--------------------------~~~~S~~sc~W~pDg~~~V~-Gs~dr~i~~wdlDgn~  345 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPS--------------------------GLGFSVSSCAWCPDGFRFVT-GSPDRTIIMWDLDGNI  345 (519)
T ss_pred             eeeccCCcchhhhhccc--------------------------CcCCCcceeEEccCCceeEe-cCCCCcEEEecCCcch
Confidence            99999998876543311                          23568999999999999887 7789999999998654


Q ss_pred             ceecccCCCccccccccc-cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390          255 AQITQAWPHAESSSAKET-RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  333 (512)
                      ...            .++ ....|.+++..+||+++++.+.|..|++|+........+.     .....+++++.|.+++
T Consensus       346 ~~~------------W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-----se~~~its~~iS~d~k  408 (519)
T KOG0293|consen  346 LGN------------WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-----SEEQPITSFSISKDGK  408 (519)
T ss_pred             hhc------------ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-----cccCceeEEEEcCCCc
Confidence            321            111 1145899999999999999999999999998653322111     1234688899999999


Q ss_pred             EEEEecCCCCEEEEecCCCCCCCceeccccCC--eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCcccccee
Q 010390          334 HILSGSSDGNAYVWQVNKPQADPIKLKSHDGE--VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRV  411 (512)
Q Consensus       334 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~--v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  411 (512)
                      ++++.-.+..|++||+..... +..+.||...  |..-+|--....++++||+|+.|+||+..+|+.+.++.-       
T Consensus       409 ~~LvnL~~qei~LWDl~e~~l-v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-------  480 (519)
T KOG0293|consen  409 LALVNLQDQEIHLWDLEENKL-VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-------  480 (519)
T ss_pred             EEEEEcccCeeEEeecchhhH-HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-------
Confidence            999999999999999995544 5678888653  444456554447999999999999999999997775332       


Q ss_pred             eeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCc
Q 010390          412 MAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP  462 (512)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  462 (512)
                                       +--.++ .++|+|.+..+........++.+|...
T Consensus       481 -----------------Hs~~vN-cVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  481 -----------------HSKTVN-CVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             -----------------Ccceee-EEecCCCCHHHhhccCCCCeEEEecCC
Confidence                             222333 667777776555555555555555543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.3e-30  Score=213.32  Aligned_cols=280  Identities=15%  Similarity=0.249  Sum_probs=215.8

Q ss_pred             ccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           49 EETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        49 h~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      -++.|.+|+|   || ...++++|+.||+||+|+++....           ..-+....|.++|.+++|+.||..+++|+
T Consensus        26 P~DsIS~l~F---SP~~~~~~~A~SWD~tVR~wevq~~g~-----------~~~ka~~~~~~PvL~v~WsddgskVf~g~   91 (347)
T KOG0647|consen   26 PEDSISALAF---SPQADNLLAAGSWDGTVRIWEVQNSGQ-----------LVPKAQQSHDGPVLDVCWSDDGSKVFSGG   91 (347)
T ss_pred             cccchheeEe---ccccCceEEecccCCceEEEEEecCCc-----------ccchhhhccCCCeEEEEEccCCceEEeec
Confidence            5677888888   88 556777999999999999986311           11244567999999999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCC-CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS-DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      .|+.+++||+.+++ ...+..|.++|.++.|-+... ..|++|+.|.+|++||.+....+.....               
T Consensus        92 ~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L---------------  155 (347)
T KOG0647|consen   92 CDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL---------------  155 (347)
T ss_pred             cCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec---------------
Confidence            99999999999995 455677999999999987541 3899999999999999997765544322               


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG  286 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  286 (512)
                                   ...+.++..-   .-+++.+..+..|.+|+++++......         ........+.|++..++.
T Consensus       156 -------------PeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~---------~~SpLk~Q~R~va~f~d~  210 (347)
T KOG0647|consen  156 -------------PERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKR---------IESPLKWQTRCVACFQDK  210 (347)
T ss_pred             -------------cceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhh---------hcCcccceeeEEEEEecC
Confidence                         2234444332   223444557999999999876654432         122234568999999998


Q ss_pred             CEEEEEecCCeEEEEEcccCCCCceEeeeecee-------ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI-------ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      ...+.|+.+|.+.+..+.......-..+..|..       --.+..++|+|....|++++.||++.+||-+.... +...
T Consensus       211 ~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k-Lk~s  289 (347)
T KOG0647|consen  211 DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK-LKTS  289 (347)
T ss_pred             CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh-hhcc
Confidence            888999999999999997755555666666653       12466799999999999999999999999877665 4667


Q ss_pred             ccccCCeEEEEeCCCCCCeEEE-EeCC
Q 010390          360 KSHDGEVTAVNWCPNEAGKIVT-SSDD  385 (512)
Q Consensus       360 ~~h~~~v~~v~~~~~~~~~l~s-~~~d  385 (512)
                      ..|..+|++..|+.+| .+++- .|.|
T Consensus       290 ~~~~qpItcc~fn~~G-~ifaYA~gYD  315 (347)
T KOG0647|consen  290 ETHPQPITCCSFNRNG-SIFAYALGYD  315 (347)
T ss_pred             CcCCCccceeEecCCC-CEEEEEeecc
Confidence            7899999999999999 55554 3443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.98  E-value=1.3e-30  Score=248.14  Aligned_cols=282  Identities=24%  Similarity=0.406  Sum_probs=236.1

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceec-cccCCCcEEEEEEecCCCEEEEEe
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISD-WVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      |...+.+..+   .  ..++++++.|.+|++||..++..             +.. +.+|.+.|.++++...+..|++|+
T Consensus       207 ~~~~~~~~q~---~--~~~~~~~s~~~tl~~~~~~~~~~-------------i~~~l~GH~g~V~~l~~~~~~~~lvsgS  268 (537)
T KOG0274|consen  207 DDHVVLCLQL---H--DGFFKSGSDDSTLHLWDLNNGYL-------------ILTRLVGHFGGVWGLAFPSGGDKLVSGS  268 (537)
T ss_pred             Ccchhhhhee---e--cCeEEecCCCceeEEeecccceE-------------EEeeccCCCCCceeEEEecCCCEEEEEe
Confidence            4555677777   4  67899999999999999876632             444 999999999999987788999999


Q ss_pred             CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      .|.+++|||..+|++...+.+|...|.++...+   ..+++|+.|.+|++|++.++..+.                    
T Consensus       269 ~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~--------------------  325 (537)
T KOG0274|consen  269 TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLN--------------------  325 (537)
T ss_pred             cCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEE--------------------
Confidence            999999999999999999999999999998764   679999999999999999665433                    


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV  287 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (512)
                             .+.+|..+|.++..+  +..++ +|+.|+.|++||+.+++++.           .+.+|...|.++.+... .
T Consensus       326 -------l~~~h~~~V~~v~~~--~~~lv-sgs~d~~v~VW~~~~~~cl~-----------sl~gH~~~V~sl~~~~~-~  383 (537)
T KOG0274|consen  326 -------LLRGHTGPVNCVQLD--EPLLV-SGSYDGTVKVWDPRTGKCLK-----------SLSGHTGRVYSLIVDSE-N  383 (537)
T ss_pred             -------EeccccccEEEEEec--CCEEE-EEecCceEEEEEhhhceeee-----------eecCCcceEEEEEecCc-c
Confidence                   445689999999998  44555 47789999999999888877           57889999999988766 8


Q ss_pred             EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc-ccCCe
Q 010390          288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS-HDGEV  366 (512)
Q Consensus       288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~-h~~~v  366 (512)
                      .+++|+.|+.|++||+++.. ..+..+.++...  +  ......+++|++++.|+.|++||...+++ ...+.+ |.+.|
T Consensus       384 ~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h~~~--v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~-~~~~~~~~~~~v  457 (537)
T KOG0274|consen  384 RLLSGSLDTTIKVWDLRTKR-KCIHTLQGHTSL--V--SSLLLRDNFLVSSSADGTIKLWDAEEGEC-LRTLEGRHVGGV  457 (537)
T ss_pred             eEEeeeeccceEeecCCchh-hhhhhhcCCccc--c--cccccccceeEeccccccEEEeecccCce-eeeeccCCcccE
Confidence            99999999999999998753 456666665422  2  23445688999999999999999999887 466666 77899


Q ss_pred             EEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          367 TAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       367 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      ..+++.  . ..+++++.||.+++||+.++++.+..
T Consensus       458 ~~l~~~--~-~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  458 SALALG--K-EEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             EEeecC--c-ceEEEEecCCeeEEEecccCchhhhh
Confidence            999987  2 68999999999999999999988754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.98  E-value=3.3e-30  Score=223.36  Aligned_cols=283  Identities=20%  Similarity=0.291  Sum_probs=233.4

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI  132 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i  132 (512)
                      +.++..   .|..+.+++|+.|..+.++|...++             .+..++||...|+.+.|+|+...+++++.|..|
T Consensus       222 i~ald~---~~s~~~ilTGG~d~~av~~d~~s~q-------------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i  285 (506)
T KOG0289|consen  222 ITALDI---IPSSSKILTGGEDKTAVLFDKPSNQ-------------ILATLKGHTKKITSVKFHKDLDTVITASADEII  285 (506)
T ss_pred             eeEEee---cCCCCcceecCCCCceEEEecchhh-------------hhhhccCcceEEEEEEeccchhheeecCCcceE
Confidence            445554   6667899999999999999987663             488899999999999999999999999999999


Q ss_pred             EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccc
Q 010390          133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKR  212 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (512)
                      +||......+......|..+|+.+..+|.+ .+|++++.||+..+.|++++........                     
T Consensus       286 ~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~---------------------  343 (506)
T KOG0289|consen  286 RVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSD---------------------  343 (506)
T ss_pred             EeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEee---------------------
Confidence            999999888888899999999999999998 9999999999999999998765432211                     


Q ss_pred             ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE
Q 010390          213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS  292 (512)
Q Consensus       213 ~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  292 (512)
                          ....-.+++.+|||||..+.+ |..||.|++||+.+.....           .+.+|.++|..+.|+.+|.+|+++
T Consensus       344 ----~~s~v~~ts~~fHpDgLifgt-gt~d~~vkiwdlks~~~~a-----------~Fpght~~vk~i~FsENGY~Lat~  407 (506)
T KOG0289|consen  344 ----ETSDVEYTSAAFHPDGLIFGT-GTPDGVVKIWDLKSQTNVA-----------KFPGHTGPVKAISFSENGYWLATA  407 (506)
T ss_pred             ----ccccceeEEeeEcCCceEEec-cCCCceEEEEEcCCccccc-----------cCCCCCCceeEEEeccCceEEEEE
Confidence                122346899999999987766 7899999999999887554           477799999999999999999999


Q ss_pred             ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC-CCCceeccccCCeEEEEe
Q 010390          293 CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ-ADPIKLKSHDGEVTAVNW  371 (512)
Q Consensus       293 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~v~~  371 (512)
                      +.|+.|++||++....-....+...   ..+..+.|.+.|.+|+.++.|=.|++++-.+.. .....+..|.+..+++.|
T Consensus       408 add~~V~lwDLRKl~n~kt~~l~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F  484 (506)
T KOG0289|consen  408 ADDGSVKLWDLRKLKNFKTIQLDEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRF  484 (506)
T ss_pred             ecCCeEEEEEehhhcccceeecccc---ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeee
Confidence            9999999999987653333222222   146779999999999999877666666643322 224556778889999999


Q ss_pred             CCCCCCeEEEEeCCCcEEEEeC
Q 010390          372 CPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       372 ~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      .... ++++++|.|..++++.+
T Consensus       485 g~~a-q~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  485 GEHA-QYLASTSMDAILRLYAL  505 (506)
T ss_pred             cccc-eEEeeccchhheEEeec
Confidence            9888 89999999999998764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.5e-30  Score=229.01  Aligned_cols=248  Identities=22%  Similarity=0.354  Sum_probs=209.5

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEE
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNIL  124 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~  124 (512)
                      +.-+.+.|+++.|   -.||++||+|+..|.|+|||.++.             ..++.+.+|+.+|..+.|+| ++..|+
T Consensus        64 ~srFk~~v~s~~f---R~DG~LlaaGD~sG~V~vfD~k~r-------------~iLR~~~ah~apv~~~~f~~~d~t~l~  127 (487)
T KOG0310|consen   64 FSRFKDVVYSVDF---RSDGRLLAAGDESGHVKVFDMKSR-------------VILRQLYAHQAPVHVTKFSPQDNTMLV  127 (487)
T ss_pred             HHhhccceeEEEe---ecCCeEEEccCCcCcEEEeccccH-------------HHHHHHhhccCceeEEEecccCCeEEE
Confidence            4457889999999   789999999999999999996543             34888999999999999999 556677


Q ss_pred             EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      +|+.|+.+++||+.+......+.+|++.|.|.+|+|.++.+++||+.||.|++||++......                 
T Consensus       128 s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v-----------------  190 (487)
T KOG0310|consen  128 SGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV-----------------  190 (487)
T ss_pred             ecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee-----------------
Confidence            999999999999999988778999999999999999987899999999999999998653111                 


Q ss_pred             ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS  284 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (512)
                                ....|..+|.++.+.|.|..++++|  ...|++||+.++.....          ....|...|+|+.+..
T Consensus       191 ----------~elnhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~----------~~~~H~KtVTcL~l~s  248 (487)
T KOG0310|consen  191 ----------VELNHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLT----------SMFNHNKTVTCLRLAS  248 (487)
T ss_pred             ----------EEecCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehh----------hhhcccceEEEEEeec
Confidence                      2235778999999999999999987  57899999997766654          3445888999999999


Q ss_pred             CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390          285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      ++..|++++-|+.+++||+.+     .+...+......+.+++.+|+++.++.|..+|.+.+-+....+
T Consensus       249 ~~~rLlS~sLD~~VKVfd~t~-----~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  249 DSTRLLSGSLDRHVKVFDTTN-----YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             CCceEeecccccceEEEEccc-----eEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence            999999999999999999644     3344455556779999999999999999999988776544433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=6.3e-30  Score=223.46  Aligned_cols=303  Identities=16%  Similarity=0.201  Sum_probs=234.1

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccc----ccccceecc-ccCCCcEEEEEEe
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHREN----AEKARISDW-VAHQNAIFDLCWI  117 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~-~~h~~~V~~l~~s  117 (512)
                      +.....|.-+|.+|..   +||+++..+++.+|.|.=|++.++.........+    ....+...- ++|...|.+++.+
T Consensus       135 ~~~~~~H~~s~~~val---s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS  211 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVAL---SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS  211 (479)
T ss_pred             ceeeccccCcceEEEe---eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence            4556679999999999   9999999999999999999998876431111110    011112222 4899999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          118 KEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       118 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      +|+++|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-. +.+.+++++.|+.|++|++....             
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s-------------  277 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS-------------  277 (479)
T ss_pred             CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH-------------
Confidence            9999999999999999999999999999999999999999976 44899999999999999998543             


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                    .+..+.+|...|.++....-++ ++++|+.|+++++|++......            .+.++.+.+
T Consensus       278 --------------~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~eesql------------ifrg~~~si  330 (479)
T KOG0299|consen  278 --------------YVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEESQL------------IFRGGEGSI  330 (479)
T ss_pred             --------------HHHHHhCCccceeeechhcccc-eEEeccccceeEEEecccccee------------eeeCCCCCe
Confidence                          3336678999999998876655 4555779999999999654443            466677789


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-c---------eeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-C---------RIESFYVKSEICPNASHILSGSSDGNAYVW  347 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~---------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  347 (512)
                      .|++|-. ...+++|+.+|.|.+|++...  .++..... |         ....++++++..|..+++++|+.+|.|++|
T Consensus       331 dcv~~In-~~HfvsGSdnG~IaLWs~~KK--kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW  407 (479)
T KOG0299|consen  331 DCVAFIN-DEHFVSGSDNGSIALWSLLKK--KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLW  407 (479)
T ss_pred             eeEEEec-ccceeeccCCceEEEeeeccc--CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEE
Confidence            9999974 457899999999999998653  33333221 1         111378999999999999999999999999


Q ss_pred             ecCCCCCCCcee--ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          348 QVNKPQADPIKL--KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       348 ~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      .+..+-..+..+  ..-.+.|++++|+++|..+++..+....+--|-
T Consensus       408 ~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  408 KIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             EecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence            998873322222  124678999999999943555556665554454

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.2e-29  Score=209.43  Aligned_cols=283  Identities=17%  Similarity=0.272  Sum_probs=225.3

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC--CCcEEEE
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR--DGSFAIW  178 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~vw  178 (512)
                      -+.+....+.|+++.|+++|.+|++++.|.+++|||..+++.+.++..++-.|..++|.... +.++.++.  |.+|+.-
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tIryL   85 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTIRYL   85 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC-ceEEEccCCCCCceEEE
Confidence            34455567899999999999999999999999999999999999999888889999998766 56666665  8899999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      ++.+.                           +.++.+.+|...|.+++.+|-+..+++ ++.|++|++||++..++.-.
T Consensus        86 sl~dN---------------------------kylRYF~GH~~~V~sL~~sP~~d~FlS-~S~D~tvrLWDlR~~~cqg~  137 (311)
T KOG1446|consen   86 SLHDN---------------------------KYLRYFPGHKKRVNSLSVSPKDDTFLS-SSLDKTVRLWDLRVKKCQGL  137 (311)
T ss_pred             EeecC---------------------------ceEEEcCCCCceEEEEEecCCCCeEEe-cccCCeEEeeEecCCCCceE
Confidence            98854                           455678899999999999999988887 55899999999997666432


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec-eeceeEEEEEECCCCCEEEE
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC-RIESFYVKSEICPNASHILS  337 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~  337 (512)
                      .             +...-...+|+|.|-++|++...+.|++||++.....+...+.-. ........+.|||||++|+.
T Consensus       138 l-------------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl  204 (311)
T KOG1446|consen  138 L-------------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL  204 (311)
T ss_pred             E-------------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence            2             122344589999999999999888999999999888887776544 44556788999999999999


Q ss_pred             ecCCCCEEEEecCCCCCCCceeccccCC---eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeee
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLKSHDGE---VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAI  414 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~---v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  414 (512)
                      ++..+.+++.|.-++.. ...+..+...   -....|.||+ +++++|+.||+|.+|+++++..+..+... ....+.++
T Consensus       205 sT~~s~~~~lDAf~G~~-~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~  281 (311)
T KOG1446|consen  205 STNASFIYLLDAFDGTV-KSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCV  281 (311)
T ss_pred             EeCCCcEEEEEccCCcE-eeeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCcccc
Confidence            99999999999988875 4555555332   2567899999 89999999999999999999987765443 23334444


Q ss_pred             ccchhcccccCCCC
Q 010390          415 PSTECRKLFMNGEP  428 (512)
Q Consensus       415 ~~~~~~~~~~~~~~  428 (512)
                      .+.|.-.+++..+.
T Consensus       282 ~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  282 RFNPRYAMFVSASS  295 (311)
T ss_pred             ccCCceeeeeecCc
Confidence            45554444444433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=6.3e-30  Score=263.60  Aligned_cols=270  Identities=17%  Similarity=0.257  Sum_probs=207.8

Q ss_pred             CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----e----eeec
Q 010390           74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK----K----CTGA  145 (512)
Q Consensus        74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~----~~~~  145 (512)
                      +|.+++|+........        ......+..|.+.|.+++|+|++++|++|+.|+.|+|||+...    .    ....
T Consensus       457 ~gl~~~~~~~~~~~~~--------~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~  528 (793)
T PLN00181        457 EGLCKYLSFSKLRVKA--------DLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVE  528 (793)
T ss_pred             hhhhhhhcccceEEEE--------eeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEE
Confidence            6778888876543210        0112335569999999999999999999999999999997542    1    1222


Q ss_pred             ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      +. +...|.+++|++....+|++++.||+|++||+.+++.                           ...+..|...|++
T Consensus       529 ~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~---------------------------~~~~~~H~~~V~~  580 (793)
T PLN00181        529 LA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL---------------------------VTEMKEHEKRVWS  580 (793)
T ss_pred             ec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE---------------------------EEEecCCCCCEEE
Confidence            33 3468999999987658999999999999999976432                           2245578889999


Q ss_pred             EEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC-CCCCEEEEEecCCeEEEEEc
Q 010390          226 VLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD-SNGVFLTASCMDHRIYLYNV  303 (512)
Q Consensus       226 ~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~  303 (512)
                      ++|+| ++..+++ |+.|+.|++||++++.....           .. ....+.++.|+ +++.+|++|+.||.|++||+
T Consensus       581 l~~~p~~~~~L~S-gs~Dg~v~iWd~~~~~~~~~-----------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~  647 (793)
T PLN00181        581 IDYSSADPTLLAS-GSDDGSVKLWSINQGVSIGT-----------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDL  647 (793)
T ss_pred             EEEcCCCCCEEEE-EcCCCEEEEEECCCCcEEEE-----------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            99997 5566665 66899999999998765542           22 22468899995 57999999999999999999


Q ss_pred             ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC-----CCCceeccccCCeEEEEeCCCCCCe
Q 010390          304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ-----ADPIKLKSHDGEVTAVNWCPNEAGK  378 (512)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~~  378 (512)
                      +... .....+.+|.  ..+..+.|. ++.+|++++.|+.|++||+....     ..+..+.+|...+.+++|++++ .+
T Consensus       648 ~~~~-~~~~~~~~h~--~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~  722 (793)
T PLN00181        648 RNPK-LPLCTMIGHS--KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-GY  722 (793)
T ss_pred             CCCC-ccceEecCCC--CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-CE
Confidence            7642 2334444443  457788886 78899999999999999997531     2356788999999999999999 89


Q ss_pred             EEEEeCCCcEEEEeCCCCc
Q 010390          379 IVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       379 l~s~~~dg~i~vwd~~~~~  397 (512)
                      |++|+.|+.|++|+.....
T Consensus       723 lasgs~D~~v~iw~~~~~~  741 (793)
T PLN00181        723 IATGSETNEVFVYHKAFPM  741 (793)
T ss_pred             EEEEeCCCEEEEEECCCCC
Confidence            9999999999999987654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4e-30  Score=226.36  Aligned_cols=287  Identities=16%  Similarity=0.247  Sum_probs=232.3

Q ss_pred             ccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           49 EETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      ..++|.+++|   ||... -+|+.+ .-.+.||+..+...             ..++...+..|+++.|..||++|+.|+
T Consensus        25 e~~~vssl~f---sp~~P~d~aVt~-S~rvqly~~~~~~~-------------~k~~srFk~~v~s~~fR~DG~LlaaGD   87 (487)
T KOG0310|consen   25 EHNSVSSLCF---SPKHPYDFAVTS-SVRVQLYSSVTRSV-------------RKTFSRFKDVVYSVDFRSDGRLLAAGD   87 (487)
T ss_pred             ccCcceeEec---CCCCCCceEEec-ccEEEEEecchhhh-------------hhhHHhhccceeEEEeecCCeEEEccC
Confidence            4577888888   65443 244444 34799999877643             455666778999999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      ..|.|+|+|..+...++.+.+|..+|..+.|+|+++..|++|++|+.+++||+.+...                      
T Consensus        88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v----------------------  145 (487)
T KOG0310|consen   88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV----------------------  145 (487)
T ss_pred             CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE----------------------
Confidence            9999999998777788899999999999999999989999999999999999986542                      


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV  287 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (512)
                           ...+.+|...|.|.+|+|....++++|+.||.|++||++......           ....|..+|..+.+-|.|.
T Consensus       146 -----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v-----------~elnhg~pVe~vl~lpsgs  209 (487)
T KOG0310|consen  146 -----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV-----------VELNHGCPVESVLALPSGS  209 (487)
T ss_pred             -----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee-----------EEecCCCceeeEEEcCCCC
Confidence                 225668999999999999999999999999999999999874322           3566778899999999999


Q ss_pred             EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeE
Q 010390          288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVT  367 (512)
Q Consensus       288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~  367 (512)
                      .+++++ .+.|++||+..+........ .  +...++|+.+..++..|++|+-|+.|++||+.+.+. ... ....++|.
T Consensus       210 ~iasAg-Gn~vkVWDl~~G~qll~~~~-~--H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv-v~s-~~~~~pvL  283 (487)
T KOG0310|consen  210 LIASAG-GNSVKVWDLTTGGQLLTSMF-N--HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV-VHS-WKYPGPVL  283 (487)
T ss_pred             EEEEcC-CCeEEEEEecCCceehhhhh-c--ccceEEEEEeecCCceEeecccccceEEEEccceEE-EEe-eeccccee
Confidence            998885 56899999976543332222 2  345689999999999999999999999999766544 222 23568999


Q ss_pred             EEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          368 AVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +++.+|++ +.++.|..||.+.+=+...++
T Consensus       284 siavs~dd-~t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  284 SIAVSPDD-QTVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             eEEecCCC-ceEEEecccceeeeehhhccc
Confidence            99999998 899999999988877554443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.6e-30  Score=244.25  Aligned_cols=255  Identities=17%  Similarity=0.243  Sum_probs=201.9

Q ss_pred             ceeccc-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC--------------------------------C------
Q 010390          100 RISDWV-AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK--------------------------------K------  140 (512)
Q Consensus       100 ~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~--------------------------------~------  140 (512)
                      ..+.+. +|++.|+++.|++||+|||+||.|+.|+||.+..                                .      
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            345556 8999999999999999999999999999998755                                0      


Q ss_pred             ----------------------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          141 ----------------------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       141 ----------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                                            ++++.+.+|.+.|..|.|+.+  ++|++++.|.+|++|++...+++..+         
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F---------  406 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVF---------  406 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEE---------
Confidence                                  034567889999999999974  69999999999999999987776544         


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                         .|...|+|++|+|.+...+++|+-||.|+||++...+...            ...-..-|+
T Consensus       407 -------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~------------W~Dl~~lIT  455 (712)
T KOG0283|consen  407 -------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD------------WNDLRDLIT  455 (712)
T ss_pred             -------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe------------ehhhhhhhe
Confidence                               7888999999999777777779999999999999877664            333335699


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec---e-eceeEEEEEECCCC-CEEEEecCCCCEEEEecCCCC
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC---R-IESFYVKSEICPNA-SHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~-~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      +++|.|||+..++|+.+|.+++|+........-..+..+   . ....|+.+.|.|.. ..+++.+.|..|+|||.++..
T Consensus       456 Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~  535 (712)
T KOG0283|consen  456 AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD  535 (712)
T ss_pred             eEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence            999999999999999999999999866433222222211   1 11258889988753 357778889999999997665


Q ss_pred             CCCceecccc--CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          354 ADPIKLKSHD--GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       354 ~~~~~~~~h~--~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      . +..+.|+.  ..-....|+.|| ++|+++++|..|++|+++....
T Consensus       536 l-v~KfKG~~n~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW~~~~~~~  580 (712)
T KOG0283|consen  536 L-VHKFKGFRNTSSQISASFSSDG-KHIVSASEDSWVYIWKNDSFNS  580 (712)
T ss_pred             h-hhhhcccccCCcceeeeEccCC-CEEEEeecCceEEEEeCCCCcc
Confidence            5 34555543  234566799999 9999999999999999866543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=9.5e-30  Score=232.94  Aligned_cols=274  Identities=21%  Similarity=0.324  Sum_probs=225.4

Q ss_pred             ecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 010390           61 TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK  140 (512)
Q Consensus        61 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  140 (512)
                      |+ ..+.||+|. ...|++|+..++..           ..+..  .+.+.|+++.|+++|.+|++|..+|.|.|||..+.
T Consensus       185 Ws-s~n~laVal-g~~vylW~~~s~~v-----------~~l~~--~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~  249 (484)
T KOG0305|consen  185 WS-SANVLAVAL-GQSVYLWSASSGSV-----------TELCS--FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ  249 (484)
T ss_pred             cc-cCCeEEEEe-cceEEEEecCCCce-----------EEeEe--cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc
Confidence            36 456788876 44899999887643           12222  23899999999999999999999999999999999


Q ss_pred             eeeecccC-cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc
Q 010390          141 KCTGALMG-HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA  219 (512)
Q Consensus       141 ~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (512)
                      +.+..+.+ |...|-+++|..   ..+.+|+.|+.|..+|++..+....                          .+.+|
T Consensus       250 k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~--------------------------~~~~H  300 (484)
T KOG0305|consen  250 KKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVS--------------------------TLQGH  300 (484)
T ss_pred             cccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhh--------------------------hhhcc
Confidence            99999998 999999999983   7899999999999999996653321                          25688


Q ss_pred             cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEe--cCC
Q 010390          220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASC--MDH  296 (512)
Q Consensus       220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~--~dg  296 (512)
                      ...|..+.|++++.++++ |+.|+.+.|||........           .+..|...|.+++|+|- ..+||+|+  .|+
T Consensus       301 ~qeVCgLkws~d~~~lAS-GgnDN~~~Iwd~~~~~p~~-----------~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  301 RQEVCGLKWSPDGNQLAS-GGNDNVVFIWDGLSPEPKF-----------TFTEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             cceeeeeEECCCCCeecc-CCCccceEeccCCCccccE-----------EEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence            999999999999999998 5589999999996555444           57889999999999994 55788765  789


Q ss_pred             eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE--ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCC
Q 010390          297 RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS--GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN  374 (512)
Q Consensus       297 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~  374 (512)
                      .|++||..++.  .+   ........|..+.|++..+-|++  |..++.|.||++.+.+. ...+.+|...|..++++||
T Consensus       369 ~i~fwn~~~g~--~i---~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~-~~~l~gH~~RVl~la~SPd  442 (484)
T KOG0305|consen  369 CIKFWNTNTGA--RI---DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL-VAELLGHTSRVLYLALSPD  442 (484)
T ss_pred             EEEEEEcCCCc--Ee---cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce-eeeecCCcceeEEEEECCC
Confidence            99999987532  22   22233456888999999877665  44577899999998655 5789999999999999999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCc
Q 010390          375 EAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       375 ~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      + ..+++|+.|.++++|++-+..
T Consensus       443 g-~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  443 G-ETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             C-CEEEEecccCcEEeccccCCC
Confidence            9 899999999999999998753

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=3.9e-30  Score=219.28  Aligned_cols=291  Identities=21%  Similarity=0.283  Sum_probs=223.0

Q ss_pred             ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCC--CCeEEEEeCCCcEEEEeCCC
Q 010390          105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN--SDILVSGSRDGSFAIWDLRC  182 (512)
Q Consensus       105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s~~~dg~i~vwd~~~  182 (512)
                      ..|.+.|.++.-.  +++|++|++||.++|||. .|+++..+.+|.++|.+++|.-.+  ...|++++.|.++++|.++.
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            3588899998876  789999999999999995 688899999999999988886544  13699999999999999987


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce------
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ------  256 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~------  256 (512)
                      ++.....                       .....+|...|.++...+++..+++ |+.|..|++|+..+....      
T Consensus       179 ~~~~~~~-----------------------~~~~~GHk~~V~sVsv~~sgtr~~S-gS~D~~lkiWs~~~~~~~~~E~~s  234 (423)
T KOG0313|consen  179 GENKVKA-----------------------LKVCRGHKRSVDSVSVDSSGTRFCS-GSWDTMLKIWSVETDEEDELESSS  234 (423)
T ss_pred             chhhhhH-----------------------HhHhcccccceeEEEecCCCCeEEe-ecccceeeecccCCCccccccccc
Confidence            6644321                       2233489999999999999998887 668999999993221100      


Q ss_pred             --------ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE
Q 010390          257 --------ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI  328 (512)
Q Consensus       257 --------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (512)
                              .........+...+.+|..+|.++.|++ ...+++++.|.+|+.||+..+..  ...+.+   ...+.++.+
T Consensus       235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~--~~~~~~---~ksl~~i~~  308 (423)
T KOG0313|consen  235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL--KSTLTT---NKSLNCISY  308 (423)
T ss_pred             hhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc--eeeeec---CcceeEeec
Confidence                    0111112234457889999999999998 67899999999999999976432  222222   234678999


Q ss_pred             CCCCCEEEEecCCCCEEEEecCCCC--CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc-ccccccCc
Q 010390          329 CPNASHILSGSSDGNAYVWQVNKPQ--ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR-CSSMRSPS  405 (512)
Q Consensus       329 s~~~~~l~~g~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~  405 (512)
                      +|..++|++|+.|..|++||-+++.  .....+.+|.+.|.++.|+|....+|++++.|+++++||+++.+ .+..  ..
T Consensus       309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd--I~  386 (423)
T KOG0313|consen  309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD--IA  386 (423)
T ss_pred             ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee--ec
Confidence            9999999999999999999998764  34467889999999999999998999999999999999999876 4433  22


Q ss_pred             cccceeeeeccchhcccccCCCCcc
Q 010390          406 SVRRRVMAIPSTECRKLFMNGEPGW  430 (512)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~  430 (512)
                      .+..++.++.+....-++..|.+..
T Consensus       387 ~h~DKvl~vdW~~~~~IvSGGaD~~  411 (423)
T KOG0313|consen  387 GHNDKVLSVDWNEGGLIVSGGADNK  411 (423)
T ss_pred             cCCceEEEEeccCCceEEeccCcce
Confidence            3345566666665544444444433

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=3e-29  Score=239.64  Aligned_cols=251  Identities=16%  Similarity=0.197  Sum_probs=186.6

Q ss_pred             eeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCe--------
Q 010390           71 SDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEKKK--------  141 (512)
Q Consensus        71 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------  141 (512)
                      |+.+|.|++|+....             ..+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++.        
T Consensus        50 GG~~gvI~L~~~~r~-------------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~  116 (568)
T PTZ00420         50 GGLIGAIRLENQMRK-------------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD  116 (568)
T ss_pred             CCceeEEEeeecCCC-------------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc
Confidence            567889999997653             236778999999999999996 7899999999999999997642        


Q ss_pred             eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccc
Q 010390          142 CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM  221 (512)
Q Consensus       142 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (512)
                      ++..+.+|...|.+++|+|++..+|++++.|++|++||+++++...                           .+ .+..
T Consensus       117 p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~---------------------------~i-~~~~  168 (568)
T PTZ00420        117 PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF---------------------------QI-NMPK  168 (568)
T ss_pred             ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE---------------------------EE-ecCC
Confidence            3346788999999999999885677899999999999998764321                           11 2345


Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee-----EEEeCCCCCEEEEEecCC
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS-----SLSQDSNGVFLTASCMDH  296 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~dg  296 (512)
                      .|.+++|+++|..+++++ .|+.|++||++++....           .+..|.+.+.     ...|++++.+|++++.++
T Consensus       169 ~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i~-----------tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~  236 (568)
T PTZ00420        169 KLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIAS-----------SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK  236 (568)
T ss_pred             cEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEEE-----------EEecccCCceeEEEEeeeEcCCCCEEEEEEcCC
Confidence            799999999999887744 79999999999887654           2444544432     234568889999888764


Q ss_pred             ----eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeC
Q 010390          297 ----RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC  372 (512)
Q Consensus       297 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~  372 (512)
                          .|++||++... .++...........+......+++.++++|+.|+.|++|++..+.........+..++.+++|.
T Consensus       237 ~~~R~VkLWDlr~~~-~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~  315 (568)
T PTZ00420        237 NNMREMKLWDLKNTT-SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFL  315 (568)
T ss_pred             CCccEEEEEECCCCC-CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEc
Confidence                79999998643 2343333222222233333455688999999999999999987643211222356788999999


Q ss_pred             CCC
Q 010390          373 PNE  375 (512)
Q Consensus       373 ~~~  375 (512)
                      |+.
T Consensus       316 Pkr  318 (568)
T PTZ00420        316 PKQ  318 (568)
T ss_pred             ccc
Confidence            975

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.4e-30  Score=207.73  Aligned_cols=278  Identities=17%  Similarity=0.284  Sum_probs=227.2

Q ss_pred             eccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec--ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA--LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       102 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      +.+++|...|.+++|+.+|..|++|+.|+++.+|+++..+....  ..+|.+.|-.++|+|..+.+|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            56789999999999999999999999999999999988755443  4789999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~  259 (512)
                      ++.+++......                            ...-.-+.|+|+|.++++ +..|..|.+.|.++.+.....
T Consensus        94 ~r~~k~~~~i~~----------------------------~~eni~i~wsp~g~~~~~-~~kdD~it~id~r~~~~~~~~  144 (313)
T KOG1407|consen   94 IRSGKCTARIET----------------------------KGENINITWSPDGEYIAV-GNKDDRITFIDARTYKIVNEE  144 (313)
T ss_pred             eccCcEEEEeec----------------------------cCcceEEEEcCCCCEEEE-ecCcccEEEEEecccceeehh
Confidence            998776543211                            223456789999999998 558999999999987766432


Q ss_pred             cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS  339 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  339 (512)
                                  .....+..+.|+.++.+++.....|.|.|....  ..+++..+..|+  ....|+.|+|+|+++|+|+
T Consensus       145 ------------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp--sLkpv~si~AH~--snCicI~f~p~GryfA~Gs  208 (313)
T KOG1407|consen  145 ------------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP--SLKPVQSIKAHP--SNCICIEFDPDGRYFATGS  208 (313)
T ss_pred             ------------cccceeeeeeecCCCCEEEEecCCceEEEEecc--ccccccccccCC--cceEEEEECCCCceEeecc
Confidence                        223457788999888888888888999999875  456788888887  4467899999999999999


Q ss_pred             CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchh
Q 010390          340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTEC  419 (512)
Q Consensus       340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (512)
                      .|..+.+||++..-+ .+.+..++-+|..+.|+.+| ++||++|+|-.|-|=++++|..+......              
T Consensus       209 ADAlvSLWD~~ELiC-~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd~~~eI~~~--------------  272 (313)
T KOG1407|consen  209 ADALVSLWDVDELIC-ERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGDRVWEIPCE--------------  272 (313)
T ss_pred             ccceeeccChhHhhh-heeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCCeEEEeecc--------------
Confidence            999999999987655 46788899999999999999 99999999999999999999866542211              


Q ss_pred             cccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390          420 RKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD  452 (512)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  452 (512)
                             ...+     .++|+|...+++.+-..
T Consensus       273 -------~~t~-----tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  273 -------GPTF-----TVAWHPKRPLLAYACDD  293 (313)
T ss_pred             -------CCce-----eEEecCCCceeeEEecC
Confidence                   1112     67888888888766333

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.8e-27  Score=189.06  Aligned_cols=311  Identities=18%  Similarity=0.241  Sum_probs=230.2

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccc--ccccccceeccccCCCcEEEEEEecCC
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHR--ENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .++.......|.+|+|   +|.|.+.|+|+...+.+|--...-......+.  ..++....+.-+.|++.|+|.+|+|+|
T Consensus        25 ~i~~l~dsqairav~f---hp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g  101 (350)
T KOG0641|consen   25 AINILEDSQAIRAVAF---HPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG  101 (350)
T ss_pred             EEEEecchhheeeEEe---cCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence            3444456778899999   99999999999999999875432211100010  112223345567899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCee-----eecccCcCCCEEEEEeeCC---CCCeEEEEeC-CCcEEEEeCCCCCCCCCccc
Q 010390          121 TNILTASGDQTIKIWDAEKKKC-----TGALMGHTGSIKSLCSHPT---NSDILVSGSR-DGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~---~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~  191 (512)
                      ++|++|+.|.+|++.-++...+     -..+.-|.+.|..++|..+   ++.+|++++. |..|.+-|...++...    
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~----  177 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH----  177 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce----
Confidence            9999999999999987654433     2346679999999999643   3357777664 5667776766554332    


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE  271 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  271 (512)
                                             .+.+|.+.|.++-  .-+..++++|+.|.+|++||++-..++........    .-.
T Consensus       178 -----------------------a~sghtghilaly--swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~----~~g  228 (350)
T KOG0641|consen  178 -----------------------ALSGHTGHILALY--SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH----DGG  228 (350)
T ss_pred             -----------------------eecCCcccEEEEE--EecCcEEEccCCCceEEEEeeeccceeeeccCccc----CCC
Confidence                                   4557777777763  22345666799999999999998877655422111    111


Q ss_pred             ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390          272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK  351 (512)
Q Consensus       272 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~  351 (512)
                      .....|.+++.+|.|++|++|..|....+||++.  ...++.+..|  ...+.++.|+|...++++++.|..|++-|+..
T Consensus       229 lessavaav~vdpsgrll~sg~~dssc~lydirg--~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG--GRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             cccceeEEEEECCCcceeeeccCCCceEEEEeeC--CceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            1235689999999999999999999999999986  3455555544  46688999999999999999999999999975


Q ss_pred             C---CCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          352 P---QADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       352 ~---~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      .   +.+......|.+.+..+.|+|.. .-+++.+.|.++.+|-+.
T Consensus       305 dla~el~~~vv~ehkdk~i~~rwh~~d-~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  305 DLAHELPIMVVAEHKDKAIQCRWHPQD-FSFISSSADKTATLWALN  349 (350)
T ss_pred             chhhcCceEEEEeccCceEEEEecCcc-ceeeeccCcceEEEeccC
Confidence            4   33445667899999999999998 889999999999999764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=1.5e-29  Score=221.17  Aligned_cols=276  Identities=22%  Similarity=0.406  Sum_probs=216.6

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEE
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILT  125 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s  125 (512)
                      .-|.+.|+.+.++  ..+-.++|+++..+.|.|||..+......   ...+..+-..+.+|+..-++++|++ ..-+|++
T Consensus       121 i~h~gEVnRaRym--PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~---~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  121 INHDGEVNRARYM--PQNPNIVATKTSSGDVYVFDYTKHPSKPK---ASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             ccCCccchhhhhC--CCCCcEEEecCCCCCEEEEEeccCCCccc---ccccCCCceEEEeecccccccccccccceeEee
Confidence            3499999999996  33557899999999999999865432110   0013344557899999899999999 4457889


Q ss_pred             EeCCCcEEEEeCCCCe-------eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          126 ASGDQTIKIWDAEKKK-------CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       126 ~~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      ++.|++|.+||+....       +...+.+|...|..++|++....+|++++.|+.+.|||+++...             
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~-------------  262 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS-------------  262 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC-------------
Confidence            9999999999997542       34567899999999999999989999999999999999996311             


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                  +......+|...+.|++|+|-+..++++|+.|++|.+||+|+.+....          .+.+|...|.
T Consensus       263 ------------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh----------~~e~H~dev~  320 (422)
T KOG0264|consen  263 ------------KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH----------TFEGHEDEVF  320 (422)
T ss_pred             ------------CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCce----------eccCCCcceE
Confidence                        122255688999999999999999999899999999999999877443          6888999999


Q ss_pred             EEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCc
Q 010390          279 SLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI  357 (512)
Q Consensus       279 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~  357 (512)
                      ++.|+|.. ..|++++.|+.+.+||+........                  ++      -..||         .-.++.
T Consensus       321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~------------------~e------da~dg---------ppEllF  367 (422)
T KOG0264|consen  321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS------------------PE------DAEDG---------PPELLF  367 (422)
T ss_pred             EEEeCCCCCceeEecccCCcEEEEeccccccccC------------------hh------hhccC---------CcceeE
Confidence            99999964 5788889999999999854321110                  00      00112         122234


Q ss_pred             eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      .-.||...|..+.|+|..+..++|.++|+.+.||++..
T Consensus       368 ~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  368 IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            55789999999999999999999999999999999874

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-28  Score=204.47  Aligned_cols=281  Identities=18%  Similarity=0.251  Sum_probs=216.5

Q ss_pred             EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecc
Q 010390           67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL  146 (512)
Q Consensus        67 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  146 (512)
                      .|++|++...|.=+++.-.. ............++..+.+|.+.|++++.  ++.++|+|+.|.+|+|||+.....+..+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~-~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEP-KGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCc-cccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce
Confidence            46788888888777765332 11111122334557788999999999998  5899999999999999999999999999


Q ss_pred             cCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          147 MGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       147 ~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      ..|.+.|+++.|.+.- .+.|++|+.||.|.+|+...-                           .....+++|.+.|+.
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W---------------------------~~~~slK~H~~~Vt~  132 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW---------------------------ELLKSLKAHKGQVTD  132 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe---------------------------EEeeeecccccccce
Confidence            9999999999998754 138999999999999998743                           334467789999999


Q ss_pred             EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                      ++.+|.++..++.| .|+.+++||+-+++.-......+            .-+.+.|+|.|.+++.+..+ .|-+|.+..
T Consensus       133 lsiHPS~KLALsVg-~D~~lr~WNLV~Gr~a~v~~L~~------------~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~  198 (362)
T KOG0294|consen  133 LSIHPSGKLALSVG-GDQVLRTWNLVRGRVAFVLNLKN------------KATLVSWSPQGDHFVVSGRN-KIDIYQLDN  198 (362)
T ss_pred             eEecCCCceEEEEc-CCceeeeehhhcCccceeeccCC------------cceeeEEcCCCCEEEEEecc-EEEEEeccc
Confidence            99999999988877 69999999999988765432222            23449999999988888655 688888754


Q ss_pred             CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEe--CCCCCCeEEEEe
Q 010390          306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNW--CPNEAGKIVTSS  383 (512)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~--~~~~~~~l~s~~  383 (512)
                      ...  ...+...   ..+.++.| -++..|++|++|+.|.+||.++... ...+.+|...|-++.+  .|++ .+|+|+|
T Consensus       199 A~v--~~~i~~~---~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~-~~~~~AH~~RVK~i~~~~~~~~-~~lvTaS  270 (362)
T KOG0294|consen  199 ASV--FREIENP---KRILCATF-LDGSELLVGGDNEWISLKDTDSDTP-LTEFLAHENRVKDIASYTNPEH-EYLVTAS  270 (362)
T ss_pred             HhH--hhhhhcc---ccceeeee-cCCceEEEecCCceEEEeccCCCcc-ceeeecchhheeeeEEEecCCc-eEEEEec
Confidence            221  1111111   12333444 4677899999999999999998554 5788999999999984  3556 7999999


Q ss_pred             CCCcEEEEeCCCCccc
Q 010390          384 DDYTVRLWSLENSRCS  399 (512)
Q Consensus       384 ~dg~i~vwd~~~~~~~  399 (512)
                      .||.|+|||++.....
T Consensus       271 SDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  271 SDGFIKVWDIDMETKK  286 (362)
T ss_pred             cCceEEEEEccccccC
Confidence            9999999999877544

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.3e-28  Score=205.17  Aligned_cols=273  Identities=17%  Similarity=0.212  Sum_probs=209.8

Q ss_pred             eeecCcccccccccCCCCCCceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccc
Q 010390           16 RELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHREN   95 (512)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~   95 (512)
                      +-+.||+....|.......  ...-..++.+..|.+++.+|++     ++.++|+|+.|-+|+|||+.+..         
T Consensus        11 ~~i~Gf~l~~~~~~~~~s~--~~~l~~lF~~~aH~~sitavAV-----s~~~~aSGssDetI~IYDm~k~~---------   74 (362)
T KOG0294|consen   11 HVILGFKLDPEPKGCTDSV--KPTLKPLFAFSAHAGSITALAV-----SGPYVASGSSDETIHIYDMRKRK---------   74 (362)
T ss_pred             eEEEEEEeccCcccccccc--ceeeeccccccccccceeEEEe-----cceeEeccCCCCcEEEEeccchh---------
Confidence            4456666665552111111  2222346778889999999999     78999999999999999998764         


Q ss_pred             ccccceeccccCCCcEEEEEEecCCC--EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC
Q 010390           96 AEKARISDWVAHQNAIFDLCWIKEDT--NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG  173 (512)
Q Consensus        96 ~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  173 (512)
                          ++..+..|.+.|+++.|.++-.  +|++|+.||.|.+|+....+++..+++|.+.|+.++.+|.+ .+.++.+.|+
T Consensus        75 ----qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~  149 (362)
T KOG0294|consen   75 ----QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQ  149 (362)
T ss_pred             ----hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCc
Confidence                3777888999999999999665  89999999999999999999999999999999999999998 8999999999


Q ss_pred             cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL  253 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~  253 (512)
                      .++.||+-+++.......                            ....+.+.|+|.|.++++.+  ...|-+|.+.+.
T Consensus       150 ~lr~WNLV~Gr~a~v~~L----------------------------~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A  199 (362)
T KOG0294|consen  150 VLRTWNLVRGRVAFVLNL----------------------------KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNA  199 (362)
T ss_pred             eeeeehhhcCccceeecc----------------------------CCcceeeEEcCCCCEEEEEe--ccEEEEEecccH
Confidence            999999987764432211                            12344599999999988865  567999998876


Q ss_pred             cceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390          254 KAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  333 (512)
                      ........+            ..+.++.|. ++..|++|..|+.|.+||...  ..+...+.+|.....-...--.|++.
T Consensus       200 ~v~~~i~~~------------~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds--~~~~~~~~AH~~RVK~i~~~~~~~~~  264 (362)
T KOG0294|consen  200 SVFREIENP------------KRILCATFL-DGSELLVGGDNEWISLKDTDS--DTPLTEFLAHENRVKDIASYTNPEHE  264 (362)
T ss_pred             hHhhhhhcc------------ccceeeeec-CCceEEEecCCceEEEeccCC--CccceeeecchhheeeeEEEecCCce
Confidence            654432111            235566665 567899999999999999765  55666677765443222233457789


Q ss_pred             EEEEecCCCCEEEEecCCCCC
Q 010390          334 HILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       334 ~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      +|++++.||.|++||++....
T Consensus       265 ~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  265 YLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             EEEEeccCceEEEEEcccccc
Confidence            999999999999999987543

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.8e-29  Score=209.26  Aligned_cols=298  Identities=15%  Similarity=0.235  Sum_probs=243.9

Q ss_pred             eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390           39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK  118 (512)
Q Consensus        39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~  118 (512)
                      ...+..++.||.+.|..|+.   .....++.+++.|.+-+||.++++.+             +.++.+|.+.|+++.|++
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa---~~tqpi~gtASADhTA~iWs~Esg~C-------------L~~Y~GH~GSVNsikfh~  200 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAA---DSTQPICGTASADHTARIWSLESGAC-------------LATYTGHTGSVNSIKFHN  200 (481)
T ss_pred             eEeehhhhcccccceeeehh---hcCCcceeecccccceeEEeeccccc-------------eeeecccccceeeEEecc
Confidence            34566788999999999998   55566999999999999999998855             888999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeC------CCC----------------------------------eeeecccCcCCCEEEEEe
Q 010390          119 EDTNILTASGDQTIKIWDA------EKK----------------------------------KCTGALMGHTGSIKSLCS  158 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~------~~~----------------------------------~~~~~~~~h~~~v~~l~~  158 (512)
                      .+.++++++.|++..||..      ...                                  .++..+.+|.+.|.+..|
T Consensus       201 s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW  280 (481)
T KOG0300|consen  201 SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW  280 (481)
T ss_pred             ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh
Confidence            9999999999999999962      110                                  034567889999999999


Q ss_pred             eCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE
Q 010390          159 HPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA  238 (512)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  238 (512)
                      ...+ +.+++++.|.+-.+||+++++...                           .+.+|+...+.++-+|..+.+++ 
T Consensus       281 L~gg-~Q~vTaSWDRTAnlwDVEtge~v~---------------------------~LtGHd~ELtHcstHptQrLVvT-  331 (481)
T KOG0300|consen  281 LAGG-QQMVTASWDRTANLWDVETGEVVN---------------------------ILTGHDSELTHCSTHPTQRLVVT-  331 (481)
T ss_pred             hcCc-ceeeeeeccccceeeeeccCceec---------------------------cccCcchhccccccCCcceEEEE-
Confidence            8866 899999999999999999887654                           56688889999999998887777 


Q ss_pred             eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece
Q 010390          239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR  318 (512)
Q Consensus       239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  318 (512)
                      ++.|.+.++||++..-....          .+++|...|+++.|..+. .+++|+.|.+|++||++++.. ++..+..  
T Consensus       332 sSrDtTFRLWDFReaI~sV~----------VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs-plATIRt--  397 (481)
T KOG0300|consen  332 SSRDTTFRLWDFREAIQSVA----------VFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS-PLATIRT--  397 (481)
T ss_pred             eccCceeEeccchhhcceee----------eecccccceeEEEEecCC-ceeecCCCceEEEeeeccccC-cceeeec--
Confidence            55899999999995433222          688999999999998764 588999999999999987643 3333332  


Q ss_pred             eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC---CCceeccccCCeEEEEeCCCCC-CeEEEEeCCCcEEEEeCC
Q 010390          319 IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA---DPIKLKSHDGEVTAVNWCPNEA-GKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       319 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~---~~~~~~~h~~~v~~v~~~~~~~-~~l~s~~~dg~i~vwd~~  394 (512)
                       .+.+..++.+..+..|+.--++..|++||++....   +...-.+|...|+|++|..+.+ .-|+++|.|..+.-|++.
T Consensus       398 -dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  398 -DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             -CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence             34566788888888999999899999999987543   2234578999999999986542 358899999999999987


Q ss_pred             CC
Q 010390          395 NS  396 (512)
Q Consensus       395 ~~  396 (512)
                      ..
T Consensus       477 ~p  478 (481)
T KOG0300|consen  477 TP  478 (481)
T ss_pred             cc
Confidence            54

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.5e-30  Score=231.64  Aligned_cols=292  Identities=19%  Similarity=0.341  Sum_probs=231.2

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK-  140 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-  140 (512)
                      -|+++||.+|+.||.|++|+.......       .+......++.|...|+.+....+++.|++++.|-+|++|+...+ 
T Consensus        34 a~~~ryLfTgGRDg~i~~W~~~~d~~~-------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   34 APNGRYLFTGGRDGIIRLWSVTQDSNE-------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             CCCCceEEecCCCceEEEeccccccCC-------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence            367788999999999999998654321       111237778999999999999999999999999999999999877 


Q ss_pred             -eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee-ccc
Q 010390          141 -KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR-RKA  218 (512)
Q Consensus       141 -~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  218 (512)
                       -++.++..|.+.|.|+++-..+..++|+||.|+.|.+||++++.........                 ...... ..+
T Consensus       107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-----------------~~t~~sl~sG  169 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-----------------NVTVNSLGSG  169 (735)
T ss_pred             chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc-----------------ccccccCCCC
Confidence             6888999999999999994334489999999999999999977431110000                 000111 126


Q ss_pred             ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeE
Q 010390          219 ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRI  298 (512)
Q Consensus       219 ~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  298 (512)
                      +...|++++.++.+.. +++|+.++.+++||.++.+...           .+.+|...|.++..+.||..+++++.||+|
T Consensus       170 ~k~siYSLA~N~t~t~-ivsGgtek~lr~wDprt~~kim-----------kLrGHTdNVr~ll~~dDGt~~ls~sSDgtI  237 (735)
T KOG0308|consen  170 PKDSIYSLAMNQTGTI-IVSGGTEKDLRLWDPRTCKKIM-----------KLRGHTDNVRVLLVNDDGTRLLSASSDGTI  237 (735)
T ss_pred             CccceeeeecCCcceE-EEecCcccceEEecccccccee-----------eeeccccceEEEEEcCCCCeEeecCCCceE
Confidence            7789999999999954 4457789999999999988876           467999999999999999999999999999


Q ss_pred             EEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCe
Q 010390          299 YLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGK  378 (512)
Q Consensus       299 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~  378 (512)
                      ++||+..  +..+.++..|...  +.++..+|+-..+++|+.||.|+.=|+.+.... ..+...+.+|..+..+.+. +-
T Consensus       238 rlWdLgq--QrCl~T~~vH~e~--VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-tlick~daPv~~l~~~~~~-~~  311 (735)
T KOG0308|consen  238 RLWDLGQ--QRCLATYIVHKEG--VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-TLICKEDAPVLKLHLHEHD-NS  311 (735)
T ss_pred             Eeeeccc--cceeeeEEeccCc--eEEEeeCCCcceEEecCCCCcEEecccCCchhh-eEeecCCCchhhhhhcccc-CC
Confidence            9999965  4556666655533  778888899999999999999999999986543 3344456778888887665 45


Q ss_pred             EEEEeCCCcEEEEeCCC
Q 010390          379 IVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       379 l~s~~~dg~i~vwd~~~  395 (512)
                      +-+++.|+.|+-|...-
T Consensus       312 ~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  312 VWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             ceeeeccccceecCCcc
Confidence            57778899999997654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.5e-29  Score=202.27  Aligned_cols=245  Identities=18%  Similarity=0.263  Sum_probs=199.7

Q ss_pred             EEEEEec-CCCEEEEEe-------CCCcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390          112 FDLCWIK-EDTNILTAS-------GDQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR  181 (512)
Q Consensus       112 ~~l~~s~-~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  181 (512)
                      +++.||| -..+|+.+.       ..|.+.|-++...+-+..+.  .-.+.+..++|++...+.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            5788999 233344322       36899999997554444332  2346899999999988999999999999999964


Q ss_pred             CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390          182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~  261 (512)
                      ..                          ..++..++.|..+|.++.|++..+..+.+++.|++|++|+....+.+.    
T Consensus        92 ~~--------------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~----  141 (311)
T KOG0277|consen   92 MP--------------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ----  141 (311)
T ss_pred             CC--------------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE----
Confidence            32                          234457788999999999999877777778899999999999887776    


Q ss_pred             CCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEEEec
Q 010390          262 PHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHILSGS  339 (512)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~  339 (512)
                             .+.+|...|....|+| .++.+++++.|+.+++||++....  ...+..|.  ..+.++.|+. +.+.|++|+
T Consensus       142 -------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk--~~~i~ah~--~Eil~cdw~ky~~~vl~Tg~  210 (311)
T KOG0277|consen  142 -------TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK--FMSIEAHN--SEILCCDWSKYNHNVLATGG  210 (311)
T ss_pred             -------eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc--eeEEEecc--ceeEeecccccCCcEEEecC
Confidence                   4677889999999998 567999999999999999877532  22355554  4577888987 466789999


Q ss_pred             CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      .|+.|+.||+++-+.++..+.+|.-.|..+.|+|....+|+|++.|-+++|||...+.
T Consensus       211 vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  211 VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD  268 (311)
T ss_pred             CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence            9999999999999888899999999999999999987899999999999999998554

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=1.6e-28  Score=233.87  Aligned_cols=216  Identities=18%  Similarity=0.235  Sum_probs=171.3

Q ss_pred             ecCCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC-CE
Q 010390           45 EHHGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED-TN  122 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~  122 (512)
                      .+.||.++|.+|+|   +| ++++||+|+.||.|+|||+.+.....      .....+..+.+|...|.+++|+|++ .+
T Consensus        70 ~l~GH~~~V~~v~f---sP~d~~~LaSgS~DgtIkIWdi~~~~~~~------~~~~~l~~L~gH~~~V~~l~f~P~~~~i  140 (493)
T PTZ00421         70 ILLGQEGPIIDVAF---NPFDPQKLFTASEDGTIMGWGIPEEGLTQ------NISDPIVHLQGHTKKVGIVSFHPSAMNV  140 (493)
T ss_pred             eEeCCCCCEEEEEE---cCCCCCEEEEEeCCCEEEEEecCCCcccc------ccCcceEEecCCCCcEEEEEeCcCCCCE
Confidence            46799999999999   88 88999999999999999997542110      0113466788999999999999975 68


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      |++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++...               
T Consensus       141 LaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~---------------  204 (493)
T PTZ00421        141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVS---------------  204 (493)
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEE---------------
Confidence            9999999999999999999999999999999999999988 899999999999999998765322               


Q ss_pred             ccccccccccceecccccc-cEEEEEEeecCCEEEEEee---cCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          203 GAHLLSQSKRVSRRKAASM-SITSVLYLKDEVSIATASA---VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                  .+..|.. ....+.|.+++..++++|.   .|+.|++||+++........         .......+.
T Consensus       205 ------------tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~---------~~d~~~~~~  263 (493)
T PTZ00421        205 ------------SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV---------DLDQSSALF  263 (493)
T ss_pred             ------------EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe---------ccCCCCceE
Confidence                        2234443 3456788888888887663   47999999998765433211         111223456


Q ss_pred             EEEeCCCCCEEEEEe-cCCeEEEEEcccC
Q 010390          279 SLSQDSNGVFLTASC-MDHRIYLYNVLQL  306 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  306 (512)
                      ...|++++.+|++++ .|+.|++||+.+.
T Consensus       264 ~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        264 IPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            677899999999887 5999999999764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=7.1e-28  Score=200.39  Aligned_cols=273  Identities=17%  Similarity=0.215  Sum_probs=212.3

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD  129 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d  129 (512)
                      .+.|.+|.|   +|.++.|++++.||.+++||+....              +...-.|..++.+++|.+ ...+++|+-|
T Consensus        13 ~d~IS~v~f---~~~~~~LLvssWDgslrlYdv~~~~--------------l~~~~~~~~plL~c~F~d-~~~~~~G~~d   74 (323)
T KOG1036|consen   13 EDGISSVKF---SPSSSDLLVSSWDGSLRLYDVPANS--------------LKLKFKHGAPLLDCAFAD-ESTIVTGGLD   74 (323)
T ss_pred             hhceeeEEE---cCcCCcEEEEeccCcEEEEeccchh--------------hhhheecCCceeeeeccC-CceEEEeccC
Confidence            566788888   8888999999999999999987642              333446899999999985 5689999999


Q ss_pred             CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390          130 QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ  209 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (512)
                      |.|+.+|+.++.... +..|..+|.||.+++.. ..+++|+.|++|++||.+........                    
T Consensus        75 g~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~--------------------  132 (323)
T KOG1036|consen   75 GQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTF--------------------  132 (323)
T ss_pred             ceEEEEEecCCccee-eccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccccc--------------------
Confidence            999999999887554 55699999999999866 89999999999999999864332211                    


Q ss_pred             cccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEE
Q 010390          210 SKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL  289 (512)
Q Consensus       210 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  289 (512)
                              .....|.++...  +..|++ |+.+..|.+||+++.....+.         .....+-.+.|+++-|++.-.
T Consensus       133 --------d~~kkVy~~~v~--g~~LvV-g~~~r~v~iyDLRn~~~~~q~---------reS~lkyqtR~v~~~pn~eGy  192 (323)
T KOG1036|consen  133 --------DQGKKVYCMDVS--GNRLVV-GTSDRKVLIYDLRNLDEPFQR---------RESSLKYQTRCVALVPNGEGY  192 (323)
T ss_pred             --------ccCceEEEEecc--CCEEEE-eecCceEEEEEcccccchhhh---------ccccceeEEEEEEEecCCCce
Confidence                    112367766654  556666 557999999999998776532         223334568999999999999


Q ss_pred             EEEecCCeEEEEEcccC--CCCceEeeeece-------eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390          290 TASCMDHRIYLYNVLQL--DKGPIQHFSGCR-------IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK  360 (512)
Q Consensus       290 ~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~  360 (512)
                      ++++-||+|.+=.+...  .......+..|.       .--++.+++|+|-...||+|+.||.|.+||+.+.+. +..+.
T Consensus       193 ~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr-l~q~~  271 (323)
T KOG1036|consen  193 VVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR-LKQLA  271 (323)
T ss_pred             EEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh-hhhcc
Confidence            99999999888655432  223334444443       334678899999999999999999999999988776 45666


Q ss_pred             cccCCeEEEEeCCCCCCeEEEEeC
Q 010390          361 SHDGEVTAVNWCPNEAGKIVTSSD  384 (512)
Q Consensus       361 ~h~~~v~~v~~~~~~~~~l~s~~~  384 (512)
                      ..+..|.+++|+.+| ..||.++.
T Consensus       272 ~~~~SI~slsfs~dG-~~LAia~s  294 (323)
T KOG1036|consen  272 KYETSISSLSFSMDG-SLLAIASS  294 (323)
T ss_pred             CCCCceEEEEeccCC-CeEEEEec
Confidence            667789999999999 88888863

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-29  Score=232.53  Aligned_cols=295  Identities=21%  Similarity=0.288  Sum_probs=234.4

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC---CCcEEEEEEec-CCCEEEE
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH---QNAIFDLCWIK-EDTNILT  125 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~s~-~~~~l~s  125 (512)
                      +++..+|+.   .++-..|+.++.. .+.||.++.......+         ...++..   .-.+..+.|.. +.++|++
T Consensus        39 k~~~nAIs~---nr~~~qiv~AGrs-~lklyai~~~~~~~~~---------~~~~k~kqn~~~S~~DVkW~~~~~NlIAT  105 (839)
T KOG0269|consen   39 KAKANAISV---NRDINQIVVAGRS-LLKLYAINPNDFSEKC---------NHRFKTKQNKFYSAADVKWGQLYSNLIAT  105 (839)
T ss_pred             ccccceEee---cCCcceeEEeccc-ceeeEeeCcccCCcce---------eeecccccceeeehhhcccccchhhhhee
Confidence            345667777   7888888888744 7888887654321111         1111111   12455677876 6788999


Q ss_pred             EeCCCcEEEEeCCC---CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          126 ASGDQTIKIWDAEK---KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       126 ~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      ++..|.|.+||+..   .+.+..|..|...|+++.|++..+++|++|+.||.|++||++......               
T Consensus       106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~---------------  170 (839)
T KOG0269|consen  106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS---------------  170 (839)
T ss_pred             ecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc---------------
Confidence            99999999999987   566778899999999999999999999999999999999999766544               


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ  282 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (512)
                                  .+.+....|..+.|+|.....++++.++|.+.+||++.......          .+..|.++|.++.|
T Consensus       171 ------------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~----------k~~AH~GpV~c~nw  228 (839)
T KOG0269|consen  171 ------------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK----------KLTAHNGPVLCLNW  228 (839)
T ss_pred             ------------cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH----------HhhcccCceEEEee
Confidence                        33345668999999998777777788999999999998765544          58899999999999


Q ss_pred             CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEec--CCCCEEEEecCCCCCCCcee
Q 010390          283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGS--SDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~--~dg~i~iw~~~~~~~~~~~~  359 (512)
                      +|++.+||+|+.|+.|+|||+.+....+...+...   ..+.++.|-|...+. ++++  .|-.|+|||++.+-.+..++
T Consensus       229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi---apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~  305 (839)
T KOG0269|consen  229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI---APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF  305 (839)
T ss_pred             cCCCceeeecCCCccEEEEeccCCCccceeEEeec---ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee
Confidence            99999999999999999999976555555555433   467789999987654 4443  47789999999998888899


Q ss_pred             ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ..|...++.++|.......|.+++.||+|..-.++++.
T Consensus       306 ~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  306 LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             eccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            99999999999987555789999999999877776654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1e-28  Score=198.43  Aligned_cols=258  Identities=14%  Similarity=0.216  Sum_probs=203.3

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CCCEE
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--EDTNI  123 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~~l  123 (512)
                      -.+|++.|..+..   .--|+.|||++.|++|+||.++...+          ..++.++.+|.++|..++|..  .|..|
T Consensus         7 dt~H~D~IHda~l---DyygkrlATcsSD~tVkIf~v~~n~~----------s~ll~~L~Gh~GPVwqv~wahPk~G~iL   73 (299)
T KOG1332|consen    7 DTQHEDMIHDAQL---DYYGKRLATCSSDGTVKIFEVRNNGQ----------SKLLAELTGHSGPVWKVAWAHPKFGTIL   73 (299)
T ss_pred             hhhhhhhhhHhhh---hhhcceeeeecCCccEEEEEEcCCCC----------ceeeeEecCCCCCeeEEeecccccCcEe
Confidence            4568888888877   66899999999999999999987633          356889999999999999976  89999


Q ss_pred             EEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          124 LTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      ++++.||.|.||.-++++  .......|...|++++|.|.+ +..|++++.||.|.+.+.+....-              
T Consensus        74 AScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w--------------  139 (299)
T KOG1332|consen   74 ASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW--------------  139 (299)
T ss_pred             eEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc--------------
Confidence            999999999999988874  345567899999999999965 357899999999999998765211              


Q ss_pred             ccccccccccccceecccccccEEEEEEeec---C-----------CEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKD---E-----------VSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                                .......+|.-.|++++|.|.   |           +.|++ |+.|..|+||+..+.+-....       
T Consensus       140 ----------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS-gGcDn~VkiW~~~~~~w~~e~-------  201 (299)
T KOG1332|consen  140 ----------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS-GGCDNLVKIWKFDSDSWKLER-------  201 (299)
T ss_pred             ----------cchhhhhccccccceeeecCcCCCccccccCcccccceeec-cCCccceeeeecCCcchhhhh-------
Confidence                      111234578889999999986   3           33555 557999999999987433322       


Q ss_pred             cccccccccCeeEEEeCCCC----CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390          267 SSAKETRLHGISSLSQDSNG----VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG  342 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  342 (512)
                        .+.+|...|+.++|.|.-    ..|++++.||++.||..... ..+-....-+.....+..+.||..|+.|++++.|+
T Consensus       202 --~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN  278 (299)
T KOG1332|consen  202 --TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN  278 (299)
T ss_pred             --hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-cCcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence              488999999999999963    58999999999999997632 22211111122345577899999999999999999


Q ss_pred             CEEEEecCC
Q 010390          343 NAYVWQVNK  351 (512)
Q Consensus       343 ~i~iw~~~~  351 (512)
                      .|.+|.-+.
T Consensus       279 kvtlwke~~  287 (299)
T KOG1332|consen  279 KVTLWKENV  287 (299)
T ss_pred             EEEEEEeCC
Confidence            999997654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=7.3e-29  Score=219.64  Aligned_cols=301  Identities=15%  Similarity=0.138  Sum_probs=224.2

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe----eeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK----CTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGS  174 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~  174 (512)
                      .-..+++|...|.++++.|.|..|++|+.|.+|++||+....    ..+.+. .....|+++.|++.+ ..|++.+....
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-~~iLvvsg~aq  237 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-DQILVVSGSAQ  237 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC-CeEEEEecCcc
Confidence            345678899999999999999999999999999999987542    122222 233479999999998 66666666779


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      .+++|-...+.........++.               .+...++|-..++|.+|+|..+..+.+++.||++++||+.+.+
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~---------------Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k  302 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIR---------------DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK  302 (641)
T ss_pred             eeEEccCCceeeeeeccchhhh---------------hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence            9999987665544443333332               2235568889999999999888777777799999999999766


Q ss_pred             ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee-eeceeceeEEEEEECCCCC
Q 010390          255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF-SGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~  333 (512)
                      .......+.     ...+..-+++.++|+++|.++++|+.||.|.+|+.......+...+ ..|.....+++++||++|+
T Consensus       303 ~q~qVik~k-----~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~  377 (641)
T KOG0772|consen  303 SQLQVIKTK-----PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN  377 (641)
T ss_pred             hheeEEeec-----cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence            544332222     2334556789999999999999999999999999866555444443 4455556799999999999


Q ss_pred             EEEEecCCCCEEEEecCCCCCCCceeccc--cCCeEEEEeCCCCCCeEEEEeC------CCcEEEEeCCCCcccccccCc
Q 010390          334 HILSGSSDGNAYVWQVNKPQADPIKLKSH--DGEVTAVNWCPNEAGKIVTSSD------DYTVRLWSLENSRCSSMRSPS  405 (512)
Q Consensus       334 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~  405 (512)
                      +|++-+.|+++++||++..+.++....+-  .-+-+.++|+|+. ++|++|..      .|.+.++|..+-+.+......
T Consensus       378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~  456 (641)
T KOG0772|consen  378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS  456 (641)
T ss_pred             hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence            99999999999999999987766554443  2356789999999 89998863      478999998888777654433


Q ss_pred             cccceeeeeccchh-ccccc
Q 010390          406 SVRRRVMAIPSTEC-RKLFM  424 (512)
Q Consensus       406 ~~~~~~~~~~~~~~-~~~~~  424 (512)
                        ...+..+.+.+. ..+++
T Consensus       457 --~aSvv~~~WhpkLNQi~~  474 (641)
T KOG0772|consen  457 --TASVVRCLWHPKLNQIFA  474 (641)
T ss_pred             --CceEEEEeecchhhheee
Confidence              334444455553 34443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.2e-28  Score=201.47  Aligned_cols=294  Identities=19%  Similarity=0.266  Sum_probs=219.9

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI  132 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i  132 (512)
                      ..|+.|   ++.|.+||+|+.||.|.|||+.+...             -+.+.+|..+|.+++||+||+.|+|++.|..|
T Consensus        26 a~~~~F---s~~G~~lAvGc~nG~vvI~D~~T~~i-------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si   89 (405)
T KOG1273|consen   26 AECCQF---SRWGDYLAVGCANGRVVIYDFDTFRI-------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI   89 (405)
T ss_pred             cceEEe---ccCcceeeeeccCCcEEEEEccccch-------------hhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence            455555   99999999999999999999987643             56788999999999999999999999999999


Q ss_pred             EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccc
Q 010390          133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKR  212 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (512)
                      .+||+..|.+++.++ ...+|+...|+|.+.+..++.-.+..-.+-++..+........                     
T Consensus        90 ~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d---------------------  147 (405)
T KOG1273|consen   90 KLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD---------------------  147 (405)
T ss_pred             EEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC---------------------
Confidence            999999999998887 6679999999998867776666665566666654221110000                     


Q ss_pred             ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE
Q 010390          213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS  292 (512)
Q Consensus       213 ~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  292 (512)
                        .-...+....+..|.+.|+++++ |...|.+.++|..+.+++.....          .....|..+.++..|+.|+.-
T Consensus       148 --~d~dln~sas~~~fdr~g~yIit-GtsKGkllv~~a~t~e~vas~ri----------ts~~~IK~I~~s~~g~~liiN  214 (405)
T KOG1273|consen  148 --DDGDLNSSASHGVFDRRGKYIIT-GTSKGKLLVYDAETLECVASFRI----------TSVQAIKQIIVSRKGRFLIIN  214 (405)
T ss_pred             --CccccccccccccccCCCCEEEE-ecCcceEEEEecchheeeeeeee----------chheeeeEEEEeccCcEEEEe
Confidence              00000112233468889999887 66799999999999887764321          113568899999999999999


Q ss_pred             ecCCeEEEEEcccCCC-------CceEeeeeceeceeEEEEEECCCCCEEEEecC-CCCEEEEecCCCCCCCceecccc-
Q 010390          293 CMDHRIYLYNVLQLDK-------GPIQHFSGCRIESFYVKSEICPNASHILSGSS-DGNAYVWQVNKPQADPIKLKSHD-  363 (512)
Q Consensus       293 ~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~h~-  363 (512)
                      +.|..|+.|+++....       .+...+..........+++|+.+|.|+++|+. ...++||....+.. ++.+.|.+ 
T Consensus       215 tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL-VKILhG~kg  293 (405)
T KOG1273|consen  215 TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL-VKILHGTKG  293 (405)
T ss_pred             cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcce-eeeecCCch
Confidence            9999999999864221       11222222222233456899999999988774 46799999988876 56777776 


Q ss_pred             CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      .....+.|+|-. ..+++. ..|.+++|.......-.
T Consensus       294 E~l~DV~whp~r-p~i~si-~sg~v~iw~~~~~enws  328 (405)
T KOG1273|consen  294 EELLDVNWHPVR-PIIASI-ASGVVYIWAVVQVENWS  328 (405)
T ss_pred             hheeecccccce-eeeeec-cCCceEEEEeecccchh
Confidence            578899999987 567666 77899999987654333

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=5e-27  Score=224.47  Aligned_cols=239  Identities=17%  Similarity=0.191  Sum_probs=179.3

Q ss_pred             EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       126 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+.+++|++|+.||+|++||+.+.......                
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~----------------  113 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE----------------  113 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----------------
Confidence            6678999999988888888899999999999999985589999999999999999864321100                


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                         .......+.+|...|.+++|+|++..++++++.|+.|++||+++++....           . .+...|.+++|+++
T Consensus       114 ---i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~-----------i-~~~~~V~Slswspd  178 (568)
T PTZ00420        114 ---IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ-----------I-NMPKKLSSLKWNIK  178 (568)
T ss_pred             ---cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE-----------E-ecCCcEEEEEECCC
Confidence               00112245578889999999999988876677899999999998775432           1 13456999999999


Q ss_pred             CCEEEEEecCCeEEEEEcccCCCCceEeeeeceec---eeEEEEEECCCCCEEEEecCCC----CEEEEecCCCCCCCce
Q 010390          286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIE---SFYVKSEICPNASHILSGSSDG----NAYVWQVNKPQADPIK  358 (512)
Q Consensus       286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~l~~g~~dg----~i~iw~~~~~~~~~~~  358 (512)
                      |.+|++++.|+.|++||+++.  ..+..+.+|...   ..+....|++++.+|++++.|+    .|+|||++....++..
T Consensus       179 G~lLat~s~D~~IrIwD~Rsg--~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~  256 (568)
T PTZ00420        179 GNLLSGTCVGKHMHIIDPRKQ--EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT  256 (568)
T ss_pred             CCEEEEEecCCEEEEEECCCC--cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE
Confidence            999999999999999999874  344556655432   1122335678999999877664    6999999975544443


Q ss_pred             ec--cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          359 LK--SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       359 ~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      ..  .+.+.+......+++ .++++|+.|+.|++|++..+.+
T Consensus       257 ~~ld~~~~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~  297 (568)
T PTZ00420        257 MSIDNASAPLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSI  297 (568)
T ss_pred             EEecCCccceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcE
Confidence            32  223333334334446 8899999999999999987753

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.2e-28  Score=204.75  Aligned_cols=265  Identities=15%  Similarity=0.258  Sum_probs=209.3

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC------------------eeeecccCcCCCEEEEEeeC
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK------------------KCTGALMGHTGSIKSLCSHP  160 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~------------------~~~~~~~~h~~~v~~l~~~~  160 (512)
                      .+...+..|+.++.+.+|++||.++++|+.|..|+|.|++..                  -.++++..|.+.|+++.|+|
T Consensus       103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            345567889999999999999999999999999999998721                  24677888999999999999


Q ss_pred             CCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee
Q 010390          161 TNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA  240 (512)
Q Consensus       161 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~  240 (512)
                      .. .+|++|+.|++|+++|+.........                         +......+|.++.|+|.|.++++ |.
T Consensus       183 re-~ILiS~srD~tvKlFDfsK~saKrA~-------------------------K~~qd~~~vrsiSfHPsGefllv-gT  235 (430)
T KOG0640|consen  183 RE-TILISGSRDNTVKLFDFSKTSAKRAF-------------------------KVFQDTEPVRSISFHPSGEFLLV-GT  235 (430)
T ss_pred             hh-heEEeccCCCeEEEEecccHHHHHHH-------------------------HHhhccceeeeEeecCCCceEEE-ec
Confidence            88 99999999999999999754332211                         22233458999999999999998 66


Q ss_pred             cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceec
Q 010390          241 VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIE  320 (512)
Q Consensus       241 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  320 (512)
                      +--.+++||+++.++.....        ....|.+.|+++.+++.+++.++++.||.|++||-..  ...+..+......
T Consensus       236 dHp~~rlYdv~T~Qcfvsan--------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS--~rCv~t~~~AH~g  305 (430)
T KOG0640|consen  236 DHPTLRLYDVNTYQCFVSAN--------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS--NRCVRTIGNAHGG  305 (430)
T ss_pred             CCCceeEEeccceeEeeecC--------cccccccceeEEEecCCccEEEEeccCCcEEeecccc--HHHHHHHHhhcCC
Confidence            77899999999988766543        3567889999999999999999999999999999543  3455555555555


Q ss_pred             eeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc-----cCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCC
Q 010390          321 SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH-----DGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLE  394 (512)
Q Consensus       321 ~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h-----~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~  394 (512)
                      ..+++..|..++++|++.+.|..+++|.+.+++.. ..+.|-     ..--+...|+... .+++.-. ..+.+.-||-.
T Consensus       306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l-~~YtGAg~tgrq~~rtqAvFNhtE-dyVl~pDEas~slcsWdaR  383 (430)
T KOG0640|consen  306 SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML-KEYTGAGTTGRQKHRTQAVFNHTE-DYVLFPDEASNSLCSWDAR  383 (430)
T ss_pred             ceeeeEEEccCCeEEeecCCcceeeeeeecCCceE-EEEecCCcccchhhhhhhhhcCcc-ceEEccccccCceeecccc
Confidence            67888999999999999999999999999998874 333332     1123445576666 4555544 45789999999


Q ss_pred             CCcccccc
Q 010390          395 NSRCSSMR  402 (512)
Q Consensus       395 ~~~~~~~~  402 (512)
                      ++..+...
T Consensus       384 tadr~~l~  391 (430)
T KOG0640|consen  384 TADRVALL  391 (430)
T ss_pred             chhhhhhc
Confidence            98766643

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=2.9e-29  Score=202.18  Aligned_cols=255  Identities=19%  Similarity=0.304  Sum_probs=212.1

Q ss_pred             eeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390           37 TEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW  116 (512)
Q Consensus        37 ~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  116 (512)
                      ...|...-.+.||.+.|.+...   +.|....|++..|=+-+|||.-++..             +..+ .|+.-|.+++|
T Consensus        46 g~tgdwigtfeghkgavw~~~l---~~na~~aasaaadftakvw~a~tgde-------------lhsf-~hkhivk~~af  108 (334)
T KOG0278|consen   46 GDTGDWIGTFEGHKGAVWSATL---NKNATRAASAAADFTAKVWDAVTGDE-------------LHSF-EHKHIVKAVAF  108 (334)
T ss_pred             CCCCCcEEeeeccCcceeeeec---Cchhhhhhhhcccchhhhhhhhhhhh-------------hhhh-hhhheeeeEEe
Confidence            3456677789999999999888   88888899999999999999877643             4444 58899999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCe-eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          117 IKEDTNILTASGDQTIKIWDAEKKK-CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       117 s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      +.|.++|++|+.+..++|+|++..+ +...+.+|.+.|..+.|...+ +.|++.+.|++||+||.+++.....+.     
T Consensus       109 ~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~-----  182 (334)
T KOG0278|consen  109 SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSLE-----  182 (334)
T ss_pred             cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEEe-----
Confidence            9999999999999999999998764 567889999999999999877 888898999999999999887665442     


Q ss_pred             eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                             ...+|+++.++++|..+.++  ..+.|++||..+...+.....|            .
T Consensus       183 -----------------------~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~lKs~k~P------------~  225 (334)
T KOG0278|consen  183 -----------------------FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLLKSYKMP------------C  225 (334)
T ss_pred             -----------------------cCCCCcceeeccCCCEEEEe--cCceeEEeccccccceeeccCc------------c
Confidence                                   24589999999999988765  4789999999988776543322            3


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      .|.+..++|+...+++|+.|..++.||..+++..... ..+  ...++.++.|+|+|...++|+.||+|+||.+..++.
T Consensus       226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkg--h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKG--HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccC--CCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            4889999999999999999999999999875543321 133  346789999999999999999999999999876544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=3.2e-28  Score=234.73  Aligned_cols=275  Identities=15%  Similarity=0.229  Sum_probs=213.9

Q ss_pred             eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCC--CCCcccc---ccccccccceeccccCCCcEEE
Q 010390           39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRR--KLPSFAC---HRENAEKARISDWVAHQNAIFD  113 (512)
Q Consensus        39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~--~~~~~~~---~~~~~~~~~~~~~~~h~~~V~~  113 (512)
                      ....+.....|.+.|.||.|   +|||++||+|+.|+.|.||+...  ....+..   ......-+.+..+.+|.+.|..
T Consensus        58 l~k~l~~m~~h~~sv~CVR~---S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D  134 (942)
T KOG0973|consen   58 LPKHLCTMDDHDGSVNCVRF---SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD  134 (942)
T ss_pred             cchhheeeccccCceeEEEE---CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce
Confidence            45667777889999999999   99999999999999999999873  1111111   1112233567888999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          114 LCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       114 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      ++|+|++.+|++++.|++|.|||..+.+.+..+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+-...+......
T Consensus       135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccch
Confidence            9999999999999999999999999999999999999999999999998 999999999999999976533322211100


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC---eEEEEeccCccceecccCCCccccccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS---IVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                                           ........+..+.|+|||.+|++..+.++   .+.|.+-.+.+...           .+
T Consensus       214 ---------------------~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~-----------~L  261 (942)
T KOG0973|consen  214 ---------------------EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDK-----------DL  261 (942)
T ss_pred             ---------------------hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeee-----------ee
Confidence                                 01122346889999999999998655544   56777666555433           58


Q ss_pred             cccccCeeEEEeCCC-----CC------------EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390          271 ETRLHGISSLSQDSN-----GV------------FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~-----~~------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  333 (512)
                      .+|..++.++.|+|.     .+            .+|+|+.|++|.||....  .+++....... ...|+.++|+|||-
T Consensus       262 vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~--~RPl~vi~~lf-~~SI~DmsWspdG~  338 (942)
T KOG0973|consen  262 VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL--PRPLFVIHNLF-NKSIVDMSWSPDGF  338 (942)
T ss_pred             ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC--CCchhhhhhhh-cCceeeeeEcCCCC
Confidence            899999999999872     11            678999999999999733  34443333221 23588899999999


Q ss_pred             EEEEecCCCCEEEEecCCC
Q 010390          334 HILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       334 ~l~~g~~dg~i~iw~~~~~  352 (512)
                      .|++++.||+|.++.++..
T Consensus       339 ~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  339 SLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             eEEEEecCCeEEEEEcchH
Confidence            9999999999999998753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.1e-27  Score=198.37  Aligned_cols=271  Identities=17%  Similarity=0.288  Sum_probs=206.0

Q ss_pred             cCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCC-Ceee-ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          106 AHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEK-KKCT-GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC  182 (512)
Q Consensus       106 ~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  182 (512)
                      .-++.|.+|+||| ...+++.++.||+|++|+++. |..+ .....|.++|.+++|+.++ ..+++|+.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccC
Confidence            4567899999999 455566899999999999987 3332 3456689999999999998 8999999999999999998


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecccC
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~  261 (512)
                      ++..                            ....|..+|..+.|-+... .++++|+.|.+|++||++....+.+...
T Consensus       104 ~Q~~----------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L  155 (347)
T KOG0647|consen  104 GQVS----------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL  155 (347)
T ss_pred             CCee----------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence            7543                            3458899999999987655 4556689999999999998877765543


Q ss_pred             CCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390          262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD  341 (512)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  341 (512)
                      |.            .++++..  -..+++++..++.|.+|++++........  ..+..-.+.+++...+.+..+.|+-+
T Consensus       156 Pe------------RvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~--~SpLk~Q~R~va~f~d~~~~alGsiE  219 (347)
T KOG0647|consen  156 PE------------RVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRI--ESPLKWQTRCVACFQDKDGFALGSIE  219 (347)
T ss_pred             cc------------eeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhh--cCcccceeeEEEEEecCCceEeeeec
Confidence            33            2555444  34578899999999999996643221111  11223346678888888888999999


Q ss_pred             CCEEEEecCCCC-CCCceeccccC---------CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCcccccee
Q 010390          342 GNAYVWQVNKPQ-ADPIKLKSHDG---------EVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRV  411 (512)
Q Consensus       342 g~i~iw~~~~~~-~~~~~~~~h~~---------~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  411 (512)
                      |.+.|..++.+. ..-..++.|..         .|++|+|+|.. ..|+|+|.||++.+||-+....+..  .+.+..+|
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~kLk~--s~~~~qpI  296 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTKLKT--SETHPQPI  296 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhhhhc--cCcCCCcc
Confidence            999999998752 22356777752         58889999987 8999999999999999988776665  34455667


Q ss_pred             eeeccchhccccc
Q 010390          412 MAIPSTECRKLFM  424 (512)
Q Consensus       412 ~~~~~~~~~~~~~  424 (512)
                      .++.++..+.+++
T Consensus       297 tcc~fn~~G~ifa  309 (347)
T KOG0647|consen  297 TCCSFNRNGSIFA  309 (347)
T ss_pred             ceeEecCCCCEEE
Confidence            7767766666664

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=4.3e-27  Score=215.79  Aligned_cols=283  Identities=17%  Similarity=0.272  Sum_probs=228.9

Q ss_pred             eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEE-EEEec-C
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFD-LCWIK-E  119 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~s~-~  119 (512)
                      +-.++.||...|.+|+.   . ++..+++++.||++++|+-..++.           .....+.+|.+-|.. ++|-+ +
T Consensus         6 ls~~l~gH~~DVr~v~~---~-~~~~i~s~sRd~t~~vw~~~~~~~-----------l~~~~~~~~~g~i~~~i~y~e~~   70 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAV---T-DGVCIISGSRDGTVKVWAKKGKQY-----------LETHAFEGPKGFIANSICYAESD   70 (745)
T ss_pred             eEEEeccCccchheeEe---c-CCeEEeecCCCCceeeeeccCccc-----------ccceecccCcceeeccceecccc
Confidence            45678999999999887   3 445799999999999999765432           224567788888888 88876 5


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      +-.|++|+.|.+|.+|...+..+..++.+|...|.+++...++ . +++|+.|.++++|.....                
T Consensus        71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l----------------  132 (745)
T KOG0301|consen   71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGEL----------------  132 (745)
T ss_pred             CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchhh----------------
Confidence            5569999999999999999999999999999999999987765 3 999999999999987532                


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                   ...+.+|...|++++..|++ .++ +|+.|.+|++|.-.+.  ..           .+.+|...|+.
T Consensus       133 -------------~~~l~gH~asVWAv~~l~e~-~~v-TgsaDKtIklWk~~~~--l~-----------tf~gHtD~VRg  184 (745)
T KOG0301|consen  133 -------------VYSLQGHTASVWAVASLPEN-TYV-TGSADKTIKLWKGGTL--LK-----------TFSGHTDCVRG  184 (745)
T ss_pred             -------------hcccCCcchheeeeeecCCC-cEE-eccCcceeeeccCCch--hh-----------hhccchhheee
Confidence                         22467899999999999988 344 4778999999986432  22           57889999999


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      +++-+++. +++++.||.|+.|++.   ...+..+.+|  ..++.+++..+++..++++++|++++||+..   .....+
T Consensus       185 L~vl~~~~-flScsNDg~Ir~w~~~---ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I  255 (745)
T KOG0301|consen  185 LAVLDDSH-FLSCSNDGSIRLWDLD---GEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVI  255 (745)
T ss_pred             eEEecCCC-eEeecCCceEEEEecc---Cceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEEEE
Confidence            99997754 7788899999999983   3456666666  4677788888899999999999999999876   223444


Q ss_pred             ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      .-..-.|+++.+-++|  -+++|+.||.||||..+..
T Consensus       256 ~lPttsiWsa~~L~Ng--DIvvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  256 TLPTTSIWSAKVLLNG--DIVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             ecCccceEEEEEeeCC--CEEEeccCceEEEEEeccc
Confidence            4345589999998887  6889999999999988743

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=5.8e-27  Score=195.56  Aligned_cols=302  Identities=15%  Similarity=0.150  Sum_probs=211.3

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      ...++||.+.|++++|   +.||++||+++.|+.|+||++++-..        .+.+.++. .---+.-+.+.|.||-+-
T Consensus        79 ~~~LKgH~~~vt~~~F---sSdGK~lat~~~Dr~Ir~w~~~DF~~--------~eHr~~R~-nve~dhpT~V~FapDc~s  146 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAF---SSDGKKLATISGDRSIRLWDVRDFEN--------KEHRCIRQ-NVEYDHPTRVVFAPDCKS  146 (420)
T ss_pred             hhhhhccCCceeeeEE---cCCCceeEEEeCCceEEEEecchhhh--------hhhhHhhc-cccCCCceEEEECCCcce
Confidence            4568999999999999   99999999999999999999976321        11111111 111235678999998776


Q ss_pred             EE-EEeCCCcEEEEeCCCC---eeee---------cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390          123 IL-TASGDQTIKIWDAEKK---KCTG---------ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN  189 (512)
Q Consensus       123 l~-s~~~dg~i~iwd~~~~---~~~~---------~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  189 (512)
                      ++ +.-...++++|.+...   ....         .-+.|.-.|..+-....+ .+|++++.|..|.+|+++ ++.+...
T Consensus       147 ~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~i  224 (420)
T KOG2096|consen  147 VVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSI  224 (420)
T ss_pred             EEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeee
Confidence            66 4445667999976432   2111         112355566666655444 899999999999999998 4443322


Q ss_pred             cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390          190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA  269 (512)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  269 (512)
                                                 ......-+..+.+|+|++++++| ..-.|++|.+--.+.-..+   .......
T Consensus       225 ---------------------------dtnq~~n~~aavSP~GRFia~~g-FTpDVkVwE~~f~kdG~fq---ev~rvf~  273 (420)
T KOG2096|consen  225 ---------------------------DTNQSSNYDAAVSPDGRFIAVSG-FTPDVKVWEPIFTKDGTFQ---EVKRVFS  273 (420)
T ss_pred             ---------------------------ccccccccceeeCCCCcEEEEec-CCCCceEEEEEeccCcchh---hhhhhhe
Confidence                                       22233556778899999999987 5778999986422110000   0001116


Q ss_pred             ccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC-----CCCceEee--eeceeceeEEEEEECCCCCEEEEecCCC
Q 010390          270 KETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL-----DKGPIQHF--SGCRIESFYVKSEICPNASHILSGSSDG  342 (512)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~g~~dg  342 (512)
                      +.+|...|..++|+++...+++.+.||++++||+.-.     ....++..  ..+........++.+|+|+.||... ..
T Consensus       274 LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs  352 (420)
T KOG2096|consen  274 LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GS  352 (420)
T ss_pred             eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CC
Confidence            8899999999999999999999999999999997321     11111111  1122223345799999999998765 45


Q ss_pred             CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          343 NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       343 ~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      .+++|..++++........|...|.+++|+++| ++++|+|+ ..+++..
T Consensus       353 ~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g-~~~atcGd-r~vrv~~  400 (420)
T KOG2096|consen  353 DLKVFASEDGKDYPELEDIHSTTISSISYSSDG-KYIATCGD-RYVRVIR  400 (420)
T ss_pred             ceEEEEcccCccchhHHHhhcCceeeEEecCCC-cEEeeecc-eeeeeec
Confidence            699999998877656667899999999999999 89999874 5677665

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=6.8e-27  Score=214.41  Aligned_cols=325  Identities=18%  Similarity=0.309  Sum_probs=236.1

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccc-------c------c-cc----ccee
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRE-------N------A-EK----ARIS  102 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~-------~------~-~~----~~~~  102 (512)
                      ....++.||++.|.+|+|.....+.-+||+++.|..||||.+.-.........+       +      . +.    ..-.
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA  261 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence            567789999999999999776666669999999999999986533211100000       0      0 00    0013


Q ss_pred             ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-------eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcE
Q 010390          103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-------CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSF  175 (512)
Q Consensus       103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  175 (512)
                      .+.||++.|+++.|+|.+..|++++.|.++.+|...+..       .+....+......+..|+|++ +.+++-+.-|..
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGF  340 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcE
Confidence            345999999999999999999999999999999876541       223334455668889999988 889999999999


Q ss_pred             EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390          176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA  255 (512)
Q Consensus       176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~  255 (512)
                      ++|......                        .........+|...|.+++|+|.|.+++++| .|.+-++|-.-..+.
T Consensus       341 hlWkt~d~~------------------------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs-~DQTTRlFa~wg~q~  395 (764)
T KOG1063|consen  341 HLWKTKDKT------------------------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVS-LDQTTRLFARWGRQQ  395 (764)
T ss_pred             EEEeccCcc------------------------ceeeccccccccccceeeeecCCCCEEEEec-cccceeeeccccccc
Confidence            999832211                        0111224457888999999999999888876 577666653220000


Q ss_pred             e--------------------e---------------cc---------------------------------------cC
Q 010390          256 Q--------------------I---------------TQ---------------------------------------AW  261 (512)
Q Consensus       256 ~--------------------~---------------~~---------------------------------------~~  261 (512)
                      .                    .               .+                                       ..
T Consensus       396 ~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~  475 (764)
T KOG1063|consen  396 EWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFF  475 (764)
T ss_pred             ceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCc
Confidence            0                    0               00                                       00


Q ss_pred             C-------C------------------c------------cccccccccccCeeEEEeCCCCCEEEEEecC-----CeEE
Q 010390          262 P-------H------------------A------------ESSSAKETRLHGISSLSQDSNGVFLTASCMD-----HRIY  299 (512)
Q Consensus       262 ~-------~------------------~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~  299 (512)
                      +       .                  +            .....+.+|...|++++.+|+++++++++..     ..|+
T Consensus       476 ~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~  555 (764)
T KOG1063|consen  476 PGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIR  555 (764)
T ss_pred             ccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEE
Confidence            0       0                  0            0011356777889999999999999999865     4699


Q ss_pred             EEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC---ceeccccCCeEEEEeCCCCC
Q 010390          300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP---IKLKSHDGEVTAVNWCPNEA  376 (512)
Q Consensus       300 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~---~~~~~h~~~v~~v~~~~~~~  376 (512)
                      +|+..+..  ....+.+|.  -.++.++|||||++|++.+.|.++.+|.........   .....|..-|.++.|+|++ 
T Consensus       556 lw~t~~W~--~~~~L~~Hs--LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde-  630 (764)
T KOG1063|consen  556 LWNTANWL--QVQELEGHS--LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE-  630 (764)
T ss_pred             EEeccchh--hhheecccc--eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc-
Confidence            99976643  334566664  458899999999999999999999999886543322   3367899999999999999 


Q ss_pred             CeEEEEeCCCcEEEEeCCCC
Q 010390          377 GKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       377 ~~l~s~~~dg~i~vwd~~~~  396 (512)
                      .+++|+|.|.+|+||.....
T Consensus       631 ~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  631 KYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ceeEEecCCceEEEEeccCc
Confidence            88999999999999999988

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.7e-27  Score=208.25  Aligned_cols=254  Identities=17%  Similarity=0.291  Sum_probs=207.1

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA  126 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~  126 (512)
                      ++|...+.+++.   |+||+|||+|+.|..|.||+.++.+.             +..+.+|.+.|.+++|-.....|+++
T Consensus       199 ~~h~keil~~av---S~Dgkylatgg~d~~v~Iw~~~t~eh-------------v~~~~ghr~~V~~L~fr~gt~~lys~  262 (479)
T KOG0299|consen  199 KGHVKEILTLAV---SSDGKYLATGGRDRHVQIWDCDTLEH-------------VKVFKGHRGAVSSLAFRKGTSELYSA  262 (479)
T ss_pred             ccccceeEEEEE---cCCCcEEEecCCCceEEEecCcccch-------------hhcccccccceeeeeeecCccceeee
Confidence            388888999998   99999999999999999999998754             77799999999999999888899999


Q ss_pred             eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          127 SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      +.|++|++|+++....+.++.+|.+.|.+|...... ..+.+|+.|+++++|++.....+                    
T Consensus       263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesql--------------------  321 (479)
T KOG0299|consen  263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQL--------------------  321 (479)
T ss_pred             ecCCceEEEehhHhHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEecccccee--------------------
Confidence            999999999999999999999999999999988765 67777779999999999543221                    


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccc-cccccccCeeEEEeCCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS-AKETRLHGISSLSQDSN  285 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~  285 (512)
                              .+.++.+.+.|++|..+.. ++ +|+.+|.|.+|++.+.+.+.....+|..... ....+..+|++++..|.
T Consensus       322 --------ifrg~~~sidcv~~In~~H-fv-sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~  391 (479)
T KOG0299|consen  322 --------IFRGGEGSIDCVAFINDEH-FV-SGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG  391 (479)
T ss_pred             --------eeeCCCCCeeeEEEecccc-ee-eccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence                    3456778999999986654 33 4889999999999999988887766653321 12233358999999999


Q ss_pred             CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEe
Q 010390          286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQ  348 (512)
Q Consensus       286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~  348 (512)
                      ..++++|+.+|.|++|.+..+- ..+..+..-....+|+.++|+++|++|++| +....+--|-
T Consensus       392 sdL~asGS~~G~vrLW~i~~g~-r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  392 SDLLASGSWSGCVRLWKIEDGL-RAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             CceEEecCCCCceEEEEecCCc-cccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence            9999999999999999997652 244445555567889999999999977665 3344444443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=6.3e-27  Score=218.95  Aligned_cols=351  Identities=15%  Similarity=0.193  Sum_probs=261.3

Q ss_pred             eeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe
Q 010390           38 EIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI  117 (512)
Q Consensus        38 ~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  117 (512)
                      ..+.++.++++|...|+++.-   +|-=+.+|.|..+|.|.|++++..+.             +..++...+.|++++|.
T Consensus       190 rt~K~v~~f~~~~s~IT~ieq---sPaLDVVaiG~~~G~ViifNlK~dki-------------l~sFk~d~g~VtslSFr  253 (910)
T KOG1539|consen  190 RTGKVVYTFQEFFSRITAIEQ---SPALDVVAIGLENGTVIIFNLKFDKI-------------LMSFKQDWGRVTSLSFR  253 (910)
T ss_pred             ccCcEEEEecccccceeEecc---CCcceEEEEeccCceEEEEEcccCcE-------------EEEEEccccceeEEEec
Confidence            345677788999999999888   99999999999999999999987643             77777557999999999


Q ss_pred             cCCCEE-EEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc------
Q 010390          118 KEDTNI-LTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN------  189 (512)
Q Consensus       118 ~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------  189 (512)
                      -||..+ ++|+..|.+.+||++..+.+..+. .|.+.|..+.|.|.. ..+++++.|..+++|=.+++.-....      
T Consensus       254 tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G  332 (910)
T KOG1539|consen  254 TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG  332 (910)
T ss_pred             cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence            998765 567777999999999988877765 788999999999966 89999999999998855533221100      


Q ss_pred             ------c------ccceeeeccc------------------cc----------ccc------ccc---------------
Q 010390          190 ------C------AESFVFSSAV------------------VK----------GAH------LLS---------------  208 (512)
Q Consensus       190 ------~------~~~~~~~~~~------------------~~----------~~~------~~~---------------  208 (512)
                            +      ...++.+...                  ..          +..      ..+               
T Consensus       333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~  412 (910)
T KOG1539|consen  333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD  412 (910)
T ss_pred             CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence                  0      0000000000                  00          000      000               


Q ss_pred             -----------------cccc-------ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390          209 -----------------QSKR-------VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA  264 (512)
Q Consensus       209 -----------------~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~  264 (512)
                                       ....       ...++.....+++++.++.|+..+. |+..|.|-+|++.++.......    
T Consensus       413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I-G~S~G~Id~fNmQSGi~r~sf~----  487 (910)
T KOG1539|consen  413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI-GYSKGTIDRFNMQSGIHRKSFG----  487 (910)
T ss_pred             ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEE-eccCCeEEEEEcccCeeecccc----
Confidence                             0000       0011223467889999999988877 7789999999999987655432    


Q ss_pred             cccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390          265 ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA  344 (512)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  344 (512)
                          ....|..+|+.++.+.-++.+++++.+|.+.+||.....  .+..+   .....+.++.++.....++.+..|-.|
T Consensus       488 ----~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~--l~~~l---~l~~~~~~iv~hr~s~l~a~~~ddf~I  558 (910)
T KOG1539|consen  488 ----DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV--LKKSL---RLGSSITGIVYHRVSDLLAIALDDFSI  558 (910)
T ss_pred             ----cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc--eeeee---ccCCCcceeeeeehhhhhhhhcCceeE
Confidence                245788999999999999999999999999999986533  22222   223345667788888889999999999


Q ss_pred             EEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhccccc
Q 010390          345 YVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFM  424 (512)
Q Consensus       345 ~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (512)
                      +++|..+.+. .+.+.+|.+.|++++||||| ++|++++.|++|++||+.++.++..+....   ....+.++|.+.+++
T Consensus       559 ~vvD~~t~kv-vR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~lID~~~vd~---~~~sls~SPngD~LA  633 (910)
T KOG1539|consen  559 RVVDVVTRKV-VREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTLIDGLLVDS---PCTSLSFSPNGDFLA  633 (910)
T ss_pred             EEEEchhhhh-hHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcceeeeEecCC---cceeeEECCCCCEEE
Confidence            9999988765 57899999999999999999 999999999999999999999988754432   333445556555554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=6.6e-27  Score=193.18  Aligned_cols=314  Identities=15%  Similarity=0.197  Sum_probs=230.7

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccc--ccccccccceeccccCCCcEEEEEEec-CCCEE
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFAC--HRENAEKARISDWVAHQNAIFDLCWIK-EDTNI  123 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l  123 (512)
                      +.|.+.|+++..-  .-.|+|+++|+.||.|.|||++....-...  ..+..-......-.+|+-.|.++.|.| |.-.+
T Consensus        40 r~HgGsvNsL~id--~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   40 RPHGGSVNSLQID--LTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             ccCCCccceeeec--cccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            4588999999994  337899999999999999999864311000  000000011223357888999999999 66678


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCC--CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS--DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      .+++.|.+++|||.++.+....|. -.+.|.+-+++|-..  .++|+|..|-.|++-|+..+....              
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH--------------  182 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH--------------  182 (397)
T ss_pred             ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee--------------
Confidence            899999999999999998877776 456788888887432  478888888899999999776543              


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC----ccccccccccccCe
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH----AESSSAKETRLHGI  277 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~i  277 (512)
                                   .+.+|...|.++.|+|...+++++|+.||.|++||++...........+    +........|.+.+
T Consensus       183 -------------~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv  249 (397)
T KOG4283|consen  183 -------------TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV  249 (397)
T ss_pred             -------------eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence                         6678999999999999999999999999999999999763222211111    11112356788899


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee--eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS--GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD  355 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~  355 (512)
                      ..++|..++.++++.+.|..+++|+...+........+  ......+-..+. +.+...++---.++.+.++++-.+.. 
T Consensus       250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~-  327 (397)
T KOG4283|consen  250 NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSF-  327 (397)
T ss_pred             eeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceE-
Confidence            99999999999999999999999998776543322111  111111111122 33333444444458899999988776 


Q ss_pred             CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      +..+..|-..|.+.++-|+- +...+|..|+.|..|-.
T Consensus       328 ir~l~~h~k~i~c~~~~~~f-q~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  328 VRRLSTHLKRINCAAYRPDF-EQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EEeeecccceeeEEeecCch-hhhhccccCCccccccc
Confidence            57888998899999999998 89999999999999987

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.2e-27  Score=216.42  Aligned_cols=242  Identities=18%  Similarity=0.272  Sum_probs=202.8

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecccc-CCCcEEEEEEecCCCEEEEEe
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVA-HQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      +++.|++|.|   +++|++||+|..+|.|.|||.....             .+..+.+ |...|-+++|.  +..+.+|+
T Consensus       216 ~~~~vtSv~w---s~~G~~LavG~~~g~v~iwD~~~~k-------------~~~~~~~~h~~rvg~laW~--~~~lssGs  277 (484)
T KOG0305|consen  216 GEELVTSVKW---SPDGSHLAVGTSDGTVQIWDVKEQK-------------KTRTLRGSHASRVGSLAWN--SSVLSSGS  277 (484)
T ss_pred             CCCceEEEEE---CCCCCEEEEeecCCeEEEEehhhcc-------------ccccccCCcCceeEEEecc--CceEEEec
Confidence            3888999999   9999999999999999999987653             3666777 99999999997  67888999


Q ss_pred             CCCcEEEEeCCCCeeeec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          128 GDQTIKIWDAEKKKCTGA-LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      .|+.|..+|+...+.... +.+|...|..+.|++++ .++|+|+.|+.+.|||......+                    
T Consensus       278 r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~--------------------  336 (484)
T KOG0305|consen  278 RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPK--------------------  336 (484)
T ss_pred             CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCcccc--------------------
Confidence            999999999998876555 88999999999999998 99999999999999999544332                    


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEe--ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATAS--AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS  284 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (512)
                             ..+..|...|.+++|+|-...++++|  +.|+.|++||..++..+..            ......|.+|.|++
T Consensus       337 -------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~------------vdtgsQVcsL~Wsk  397 (484)
T KOG0305|consen  337 -------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS------------VDTGSQVCSLIWSK  397 (484)
T ss_pred             -------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc------------cccCCceeeEEEcC
Confidence                   25668899999999999766665544  4689999999998887643            33345699999999


Q ss_pred             CCCEEEEE--ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390          285 NGVFLTAS--CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       285 ~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~  352 (512)
                      ..+-|+++  ..++.|.||+..+  ...+..+.+|.  ..+..++++|||..+++|+.|.++++|++-..
T Consensus       398 ~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  398 KYKELLSTHGYSENQITLWKYPS--MKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCEEEEecCCCCCcEEEEeccc--cceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            98766654  3678999999866  44566666765  44888999999999999999999999998764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=8.7e-27  Score=193.97  Aligned_cols=274  Identities=18%  Similarity=0.264  Sum_probs=213.6

Q ss_pred             CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390          107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      -+..|.++.|+|.+..|+.++.||++++||+........+. |..++.+.+|.++  ..+++|+.||.|+.+|+.++...
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~~   88 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNED   88 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC--ceEEEeccCceEEEEEecCCcce
Confidence            36789999999999999999999999999999887666666 8899999999874  68999999999999999877543


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                                                  .+..|...+.|+.+.+....+++ |+.|++|++||.+........       
T Consensus        89 ----------------------------~igth~~~i~ci~~~~~~~~vIs-gsWD~~ik~wD~R~~~~~~~~-------  132 (323)
T KOG1036|consen   89 ----------------------------QIGTHDEGIRCIEYSYEVGCVIS-GSWDKTIKFWDPRNKVVVGTF-------  132 (323)
T ss_pred             ----------------------------eeccCCCceEEEEeeccCCeEEE-cccCccEEEEecccccccccc-------
Confidence                                        34478889999999987777776 669999999999974433221       


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV  346 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  346 (512)
                           .....|.++...  +..|++|+.+..+.+||+++.....  ........-.+.++++-|++.-.++++-||.|.+
T Consensus       133 -----d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav  203 (323)
T KOG1036|consen  133 -----DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV  203 (323)
T ss_pred             -----ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence                 122357777764  6689999999999999998865433  2223334456778999999888999999999988


Q ss_pred             EecCCCC---CCCceecccc---------CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeee
Q 010390          347 WQVNKPQ---ADPIKLKSHD---------GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAI  414 (512)
Q Consensus       347 w~~~~~~---~~~~~~~~h~---------~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  414 (512)
                      =.++...   .....+..|.         -+|++++|+|-. ..|+||+.||.|.+||+.+.+.+..+...  ..     
T Consensus       204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~-----  275 (323)
T KOG1036|consen  204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKRLKQLAKY--ET-----  275 (323)
T ss_pred             EccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhhhhhccCC--CC-----
Confidence            7666541   2234667774         279999999997 89999999999999999999887764432  11     


Q ss_pred             ccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCC
Q 010390          415 PSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPK  454 (512)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  454 (512)
                                       .+. .++|+-||..+++++...-
T Consensus       276 -----------------SI~-slsfs~dG~~LAia~sy~y  297 (323)
T KOG1036|consen  276 -----------------SIS-SLSFSMDGSLLAIASSYQY  297 (323)
T ss_pred             -----------------ceE-EEEeccCCCeEEEEechhh
Confidence                             122 5678888888888755553

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.6e-28  Score=211.73  Aligned_cols=256  Identities=16%  Similarity=0.269  Sum_probs=207.4

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI  177 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  177 (512)
                      ....+..|.+.|..+.|-++...|++|+.|..|++|++...+  .+.++.+..+.|+++.|.+++ ..+++++.|+.+++
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRL  245 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceee
Confidence            355678899999999999999999999999999999987776  677888888999999999988 88899999999999


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                      |++...+...                           .+.+|...|+++.|...... +++|+.|.+|++||+....+..
T Consensus       246 Wnvd~~r~~~---------------------------TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  246 WNVDSLRLRH---------------------------TLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             eeccchhhhh---------------------------hhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheec
Confidence            9998765444                           66789999999999887776 5558899999999999877665


Q ss_pred             cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  337 (512)
                      +...            ...+..+..+  ...+++|..|++|++||++....  ......+   +.++++..++++..|.+
T Consensus       298 t~l~------------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~--~~sv~~g---g~vtSl~ls~~g~~lLs  358 (459)
T KOG0288|consen  298 TVLP------------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK--TRSVPLG---GRVTSLDLSMDGLELLS  358 (459)
T ss_pred             cccc------------cccccceEec--ceeeeecccccceEEEeccCCce--eeEeecC---cceeeEeeccCCeEEee
Confidence            4321            1234555554  56788999999999999877543  3333322   35788999999999999


Q ss_pred             ecCCCCEEEEecCCCCCCCceeccc----cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCc
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLKSH----DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPS  405 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~~h----~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  405 (512)
                      .+.|.++.+.|+++.... ..+.+.    ....+.+.|||++ .|+++||.||.|+||++.++++.......
T Consensus       359 ssRDdtl~viDlRt~eI~-~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s  428 (459)
T KOG0288|consen  359 SSRDDTLKVIDLRTKEIR-QTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEKVLSLS  428 (459)
T ss_pred             ecCCCceeeeecccccEE-EEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEEEeccC
Confidence            999999999999987642 232211    2348899999999 89999999999999999999988875543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=6.5e-27  Score=222.97  Aligned_cols=261  Identities=21%  Similarity=0.294  Sum_probs=206.5

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      ...+.||.+.|.++++   ..-+++|++|+.|.++++||..++..             ...+.+|.+.|.++..  ...+
T Consensus       242 ~~~l~GH~g~V~~l~~---~~~~~~lvsgS~D~t~rvWd~~sg~C-------------~~~l~gh~stv~~~~~--~~~~  303 (537)
T KOG0274|consen  242 LTRLVGHFGGVWGLAF---PSGGDKLVSGSTDKTERVWDCSTGEC-------------THSLQGHTSSVRCLTI--DPFL  303 (537)
T ss_pred             EeeccCCCCCceeEEE---ecCCCEEEEEecCCcEEeEecCCCcE-------------EEEecCCCceEEEEEc--cCce
Confidence            3349999999999999   44688999999999999999988855             8888999999999987  4567


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      +++|+.|.+|++|+++++.++..+.+|.++|+++...  + .++++|+.|++|++||+.+++++.               
T Consensus       304 ~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~---------------  365 (537)
T KOG0274|consen  304 LVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLK---------------  365 (537)
T ss_pred             EeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeee---------------
Confidence            8899999999999999999999999999999999997  3 899999999999999999666544               


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc-cceecccCCCccccccccccccCeeEEE
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL-KAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                  .+.+|...|.++.+... ..++ +|+.|+.|++||+++. ++..           .+..|..-+..+.
T Consensus       366 ------------sl~gH~~~V~sl~~~~~-~~~~-Sgs~D~~IkvWdl~~~~~c~~-----------tl~~h~~~v~~l~  420 (537)
T KOG0274|consen  366 ------------SLSGHTGRVYSLIVDSE-NRLL-SGSLDTTIKVWDLRTKRKCIH-----------TLQGHTSLVSSLL  420 (537)
T ss_pred             ------------eecCCcceEEEEEecCc-ceEE-eeeeccceEeecCCchhhhhh-----------hhcCCcccccccc
Confidence                        66789999999988765 4454 4778999999999998 5554           4566666665544


Q ss_pred             eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc
Q 010390          282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS  361 (512)
Q Consensus       282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~  361 (512)
                      +  .+++|++++.|++|++||....  ..+..+.+. ....+..+++.  ...+++++.||.+++||++++......+..
T Consensus       421 ~--~~~~Lvs~~aD~~Ik~WD~~~~--~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~  493 (537)
T KOG0274|consen  421 L--RDNFLVSSSADGTIKLWDAEEG--ECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST  493 (537)
T ss_pred             c--ccceeEeccccccEEEeecccC--ceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence            4  5779999999999999998764  445555553 12334445544  577888999999999999998774333232


Q ss_pred             ccCCeEEEEe
Q 010390          362 HDGEVTAVNW  371 (512)
Q Consensus       362 h~~~v~~v~~  371 (512)
                      .......+++
T Consensus       494 ~~~~~~~~~~  503 (537)
T KOG0274|consen  494 DLGATWGVAP  503 (537)
T ss_pred             cccccccccc
Confidence            2334444444

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=4.7e-28  Score=202.55  Aligned_cols=253  Identities=13%  Similarity=0.219  Sum_probs=206.6

Q ss_pred             cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec--------ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE
Q 010390          106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA--------LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI  177 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  177 (512)
                      +.++.+.|..|+|||++|++|+.||.|.+||..+|+....        +.-+..+|.|++|+.+. .++++|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEE
Confidence            4567788999999999999999999999999999976543        34477899999999987 89999999999999


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                      |.++++.++..+                          .++|...|+|+.|+.|+..+++++ .|.++++.-+.+++...
T Consensus       290 Wri~tG~ClRrF--------------------------drAHtkGvt~l~FSrD~SqiLS~s-fD~tvRiHGlKSGK~LK  342 (508)
T KOG0275|consen  290 WRIETGQCLRRF--------------------------DRAHTKGVTCLSFSRDNSQILSAS-FDQTVRIHGLKSGKCLK  342 (508)
T ss_pred             EEEecchHHHHh--------------------------hhhhccCeeEEEEccCcchhhccc-ccceEEEeccccchhHH
Confidence            999988766533                          237888999999999999999855 79999999999998876


Q ss_pred             cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEE
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHIL  336 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~  336 (512)
                                 ++.+|...|+...|.++|..+++++.||+|++|+..+.+  .+.++........+..+-.-| +...++
T Consensus       343 -----------EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~~~PKnpeh~i  409 (508)
T KOG0275|consen  343 -----------EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVILLPKNPEHFI  409 (508)
T ss_pred             -----------HhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh--hhhhccCCCCcccceeEEEcCCCCceEE
Confidence                       688999999999999999999999999999999987644  333443333344455555555 456788


Q ss_pred             EecCCCCEEEEecCCCCCCCceec-c--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          337 SGSSDGNAYVWQVNKPQADPIKLK-S--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       337 ~g~~dg~i~iw~~~~~~~~~~~~~-~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      ++...++|+|.++...-  ...+. +  ..+...+...+|.| .++...+.|+.++.+.+.+|++.+++
T Consensus       410 VCNrsntv~imn~qGQv--VrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~LE~tl  475 (508)
T KOG0275|consen  410 VCNRSNTVYIMNMQGQV--VRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGKLERTL  475 (508)
T ss_pred             EEcCCCeEEEEeccceE--EeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCceeeee
Confidence            88888999999986532  22332 1  23456677899999 89999999999999999999987763

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.1e-27  Score=192.59  Aligned_cols=254  Identities=22%  Similarity=0.287  Sum_probs=201.0

Q ss_pred             ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEee-CCCCCeEEEEeCCCcEEEEeC
Q 010390          105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSH-PTNSDILVSGSRDGSFAIWDL  180 (512)
Q Consensus       105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~dg~i~vwd~  180 (512)
                      ..|++.|.++...-.|+.|+|++.|++|+|+.++..   +.+.++.+|.++|+.++|. |.-+.+|++++.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            578899999888888999999999999999998764   5688899999999999995 554599999999999999998


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecc
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~  259 (512)
                      .+++-.+                         ......|...|++++|.|.+. .++++++.||.|.+.+.+....-.. 
T Consensus        88 ~~g~w~k-------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t-  141 (299)
T KOG1332|consen   88 ENGRWTK-------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-  141 (299)
T ss_pred             CCCchhh-------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc-
Confidence            7764222                         224567899999999988543 3445567899999999886521111 


Q ss_pred             cCCCccccccccccccCeeEEEeCCC---C-----------CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEE
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSN---G-----------VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVK  325 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  325 (512)
                             ......|.-+|++++|.|.   |           +.|++|+.|+.|+||+.....-..-..+.+|  ..++..
T Consensus       142 -------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H--~dwVRD  212 (299)
T KOG1332|consen  142 -------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH--KDWVRD  212 (299)
T ss_pred             -------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc--chhhhh
Confidence                   1146778889999999986   4           5699999999999999876533333445555  467888


Q ss_pred             EEECCCC----CEEEEecCCCCEEEEecCCCCC--CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          326 SEICPNA----SHILSGSSDGNAYVWQVNKPQA--DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       326 ~~~s~~~----~~l~~g~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      ++|.|.-    ..||+++.||++.||..+....  ....+......+..+.|+..| ++|+.++.|+.|.+|.-.
T Consensus       213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeC
Confidence            9999974    5799999999999998764322  123445567789999999999 899999999999999754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=4.1e-27  Score=204.30  Aligned_cols=257  Identities=19%  Similarity=0.245  Sum_probs=211.8

Q ss_pred             ceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE
Q 010390           36 FTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC  115 (512)
Q Consensus        36 ~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  115 (512)
                      +...+.++..+.||.-.|+++.+   +|+...+++++.|-.|+||......             .......|+++|+.+.
T Consensus       247 d~~s~q~l~~~~Gh~kki~~v~~---~~~~~~v~~aSad~~i~vws~~~~s-------------~~~~~~~h~~~V~~ls  310 (506)
T KOG0289|consen  247 DKPSNQILATLKGHTKKITSVKF---HKDLDTVITASADEIIRVWSVPLSS-------------EPTSSRPHEEPVTGLS  310 (506)
T ss_pred             ecchhhhhhhccCcceEEEEEEe---ccchhheeecCCcceEEeecccccc-------------Cccccccccccceeee
Confidence            34556777789999999999999   9999999999999999999986543             2555678999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCCCCeeeecccC--cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          116 WIKEDTNILTASGDQTIKIWDAEKKKCTGALMG--HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       116 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      .+|.|+||++++.|++....|++++.++.....  ..-.+++.+|+||| .+|.+|..||.|++||+.+.....      
T Consensus       311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a------  383 (506)
T KOG0289|consen  311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVA------  383 (506)
T ss_pred             eccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccc------
Confidence            999999999999999999999999988776653  22358999999999 999999999999999998765333      


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR  273 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  273 (512)
                                           .+.+|.++|..++|+.+|-++++++ +|+.|++||+|..+...+..          ...
T Consensus       384 ---------------------~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~~----------l~~  431 (506)
T KOG0289|consen  384 ---------------------KFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTIQ----------LDE  431 (506)
T ss_pred             ---------------------cCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhcccceee----------ccc
Confidence                                 6678999999999999999999855 79999999999887655432          122


Q ss_pred             ccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEec
Q 010390          274 LHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQV  349 (512)
Q Consensus       274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~  349 (512)
                      ..++.++.|+..|.+|+.++.+=.|++++-.+.+...+..+..+.  ...+.+.|....+++++++.|..++++.+
T Consensus       432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEeeccchhheEEeec
Confidence            237999999999999999988877777775544444444444443  45667899999999999999999888864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.4e-27  Score=195.22  Aligned_cols=299  Identities=19%  Similarity=0.292  Sum_probs=235.2

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      ..++.+.+|++.|+.++-......+.+++.|.+.+||.+++++|+.++.+|.+.|++|.|++.+ .++++++.|++-.||
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIW  217 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHH
Confidence            4477889999999999988777788899999999999999999999999999999999999987 999999999999999


Q ss_pred             eCC------CCCCCCCccccceeeecc---------cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC
Q 010390          179 DLR------CKSSPKSNCAESFVFSSA---------VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS  243 (512)
Q Consensus       179 d~~------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg  243 (512)
                      ...      ..........+.......         ....++  ...-.+..+.+|...|.+..|...++++++ ++.|.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~--tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vT-aSWDR  294 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH--TIRVPLMRLTGHRAVVSACDWLAGGQQMVT-ASWDR  294 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc--eeeeeeeeeeccccceEehhhhcCcceeee-eeccc
Confidence            732      211111111111000000         000000  111234467889999999999999999988 55899


Q ss_pred             eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeE
Q 010390          244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFY  323 (512)
Q Consensus       244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  323 (512)
                      +-.+||++++..+.           .+.+|....+.++-+|..+++++++.|-+.++||++ .....+..+.+|.  ..+
T Consensus       295 TAnlwDVEtge~v~-----------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR-eaI~sV~VFQGHt--dtV  360 (481)
T KOG0300|consen  295 TANLWDVETGEVVN-----------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR-EAIQSVAVFQGHT--DTV  360 (481)
T ss_pred             cceeeeeccCceec-----------cccCcchhccccccCCcceEEEEeccCceeEeccch-hhcceeeeecccc--cce
Confidence            99999999998776           588899999999999999999999999999999997 3456677788875  457


Q ss_pred             EEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc-
Q 010390          324 VKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR-  402 (512)
Q Consensus       324 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-  402 (512)
                      +++.|..+ ..+++|++|.+|++||+++...++.++. -+.+++.++.+..+ .+++.--++..|++||+...++-+.. 
T Consensus       361 TS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPr  437 (481)
T KOG0300|consen  361 TSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPR  437 (481)
T ss_pred             eEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCCCccccCCc
Confidence            77888765 4588999999999999999887766665 46789999999876 68888888899999999988876664 


Q ss_pred             -cCccccceeeeeccch
Q 010390          403 -SPSSVRRRVMAIPSTE  418 (512)
Q Consensus       403 -~~~~~~~~~~~~~~~~  418 (512)
                       ..+.+.+.+.++++.+
T Consensus       438 tsRqgHrRMV~c~AW~e  454 (481)
T KOG0300|consen  438 TSRQGHRRMVTCCAWLE  454 (481)
T ss_pred             ccccccceeeeeeeccc
Confidence             3455667777776654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=3.8e-27  Score=216.63  Aligned_cols=312  Identities=15%  Similarity=0.220  Sum_probs=233.8

Q ss_pred             ccCCcceEEEEEec---------CCCcEEEEeeCCCcEEEEECCCCCCcccccc----c--------ccc----------
Q 010390           49 EETPPLAVSFCKTS---------KNSHIFAVSDEDGYVSLFDSRRKLPSFACHR----E--------NAE----------   97 (512)
Q Consensus        49 h~~~v~~v~~~~~s---------~~~~~latg~~dg~i~iwd~~~~~~~~~~~~----~--------~~~----------   97 (512)
                      |..-|++|.-.++.         |.+ -+.|++.|++|++||+..+.......+    .        +.+          
T Consensus       368 HS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~  446 (1080)
T KOG1408|consen  368 HSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG  446 (1080)
T ss_pred             ccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence            66666666654321         222 488999999999999886321111000    0        000          


Q ss_pred             --ccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCC--CCCeEEEEeCCC
Q 010390           98 --KARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT--NSDILVSGSRDG  173 (512)
Q Consensus        98 --~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg  173 (512)
                        .+.....-.....+.+++.+|+|++|++|..-|+++||++...+....+..|...|.|+.|+..  +..+|++++.|.
T Consensus       447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR  526 (1080)
T KOG1408|consen  447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR  526 (1080)
T ss_pred             cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCc
Confidence              0111112234467999999999999999999999999999999999999999999999999753  236899999999


Q ss_pred             cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecC--CEEEEEeecCCeEEEEecc
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE--VSIATASAVNSIVKFWDTR  251 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~g~~dg~i~iwd~~  251 (512)
                      .|++||+...-.                          ....+.+|...|+++.|.-+|  ..++++| .|..|.+--.+
T Consensus       527 lIHV~Dv~rny~--------------------------l~qtld~HSssITsvKFa~~gln~~MiscG-ADksimFr~~q  579 (1080)
T KOG1408|consen  527 LIHVYDVKRNYD--------------------------LVQTLDGHSSSITSVKFACNGLNRKMISCG-ADKSIMFRVNQ  579 (1080)
T ss_pred             eEEEEecccccc--------------------------hhhhhcccccceeEEEEeecCCceEEEecc-Cchhhheehhc
Confidence            999999875432                          223566889999999998877  6677766 57766543322


Q ss_pred             CccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece-eceeEEEEEECC
Q 010390          252 NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-IESFYVKSEICP  330 (512)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~  330 (512)
                      .......+.. +     ........++.|+..|+.+++++++.|..|+|||+..+  +..+.+.+.. .++....+...|
T Consensus       580 k~~~g~~f~r-~-----t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg--Kq~k~FKgs~~~eG~lIKv~lDP  651 (1080)
T KOG1408|consen  580 KASSGRLFPR-H-----TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG--KQVKSFKGSRDHEGDLIKVILDP  651 (1080)
T ss_pred             cccCceeccc-c-----ccccccceEEEeeeCCCcceEEEEecccceEEEecccc--ceeeeecccccCCCceEEEEECC
Confidence            1111111000 0     22333456899999999999999999999999999874  4555666543 346788899999


Q ss_pred             CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          331 NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      .|.||++...|.++.++|+.++++ .....||...|+.+.|.+|- +.|++.+.||.|.||.+.....
T Consensus       652 SgiY~atScsdktl~~~Df~sgEc-vA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~~mi  717 (1080)
T KOG1408|consen  652 SGIYLATSCSDKTLCFVDFVSGEC-VAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPLTMI  717 (1080)
T ss_pred             CccEEEEeecCCceEEEEeccchh-hhhhcCcchheeeeeecccc-hhheeecCCceEEEEECchhHh
Confidence            999999999999999999999988 57888999999999999999 8999999999999999876443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=1.6e-27  Score=208.47  Aligned_cols=281  Identities=12%  Similarity=0.198  Sum_probs=219.4

Q ss_pred             CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEE
Q 010390          148 GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVL  227 (512)
Q Consensus       148 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (512)
                      .|.+.|+.+.+.|+++.++++.+..+.|.|||............                 ......++.+|...-.+++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-----------------~~~Pdl~L~gH~~eg~gls  184 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-----------------ECRPDLRLKGHEKEGYGLS  184 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-----------------cCCCceEEEeecccccccc
Confidence            48999999999999999999999999999999875443221100                 1233346778888888899


Q ss_pred             EeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccC
Q 010390          228 YLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQL  306 (512)
Q Consensus       228 ~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~  306 (512)
                      |++.....+.+++.|+.|++||+...........    +...+.+|...|..++|++- ...+++.+.|+.+.|||++..
T Consensus       185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~----p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~  260 (422)
T KOG0264|consen  185 WNRQQEGTLLSGSDDHTICLWDINAESKEDKVVD----PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN  260 (422)
T ss_pred             cccccceeEeeccCCCcEEEEeccccccCCcccc----ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC
Confidence            9998887777788999999999987655321111    12267889999999999984 557888899999999999874


Q ss_pred             CCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390          307 DKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD  385 (512)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  385 (512)
                      ...+......|  ...+.+++|+|-+ ..||+|+.|++|++||+++....+..+.+|+..|.+|.|+|.....|++++.|
T Consensus       261 ~~~~~~~~~ah--~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D  338 (422)
T KOG0264|consen  261 TSKPSHSVKAH--SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD  338 (422)
T ss_pred             CCCCccccccc--CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence            33444444444  4668899999965 56689999999999999999888899999999999999999988899999999


Q ss_pred             CcEEEEeCCCCcccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCc
Q 010390          386 YTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP  462 (512)
Q Consensus       386 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  462 (512)
                      +.+.|||+..-...+.  ++.        +......+++...++...+. +++|+|..............+.+|.-.
T Consensus       339 ~rl~vWDls~ig~eq~--~ed--------a~dgppEllF~HgGH~~kV~-DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  339 RRLNVWDLSRIGEEQS--PED--------AEDGPPELLFIHGGHTAKVS-DFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CcEEEEeccccccccC--hhh--------hccCCcceeEEecCcccccc-cccCCCCCCeEEEEecCCceEEEeecc
Confidence            9999999976443332  111        44456778889999999998 999999998877665555555555554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-26  Score=189.35  Aligned_cols=298  Identities=14%  Similarity=0.132  Sum_probs=221.2

Q ss_pred             ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC  182 (512)
Q Consensus       103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  182 (512)
                      .+++|+.+++.+.|+.+|++|.+++.|.+..||-..+|+.+.++.+|.+.|+|+...-+. ..+++|+.|.++++||+.+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCC
Confidence            468999999999999999999999999999999998999999999999999999998876 8999999999999999999


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee----cCCeEEEEeccCccceec
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA----VNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~----~dg~i~iwd~~~~~~~~~  258 (512)
                      ++.+...                            ....+|..+.|+.+++.++++..    ..+.|.++|++.......
T Consensus        84 Gk~la~~----------------------------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~  135 (327)
T KOG0643|consen   84 GKQLATW----------------------------KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID  135 (327)
T ss_pred             CcEEEEe----------------------------ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence            8865533                            23458999999999998887541    346799999985543211


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  338 (512)
                      ...|    ......+...++.+.|.|-++.|++|..||.|.+||++++.. .+.....  +...+..+++++|..+++++
T Consensus       136 s~ep----~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~-~v~s~~~--h~~~Ind~q~s~d~T~FiT~  208 (327)
T KOG0643|consen  136 SEEP----YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE-LVDSDEE--HSSKINDLQFSRDRTYFITG  208 (327)
T ss_pred             ccCc----eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce-eeechhh--hccccccccccCCcceEEec
Confidence            1111    113445557899999999999999999999999999976422 2222222  23468889999999999999


Q ss_pred             cCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC-cEEEEeCCCCcccccccCccccceeeeeccc
Q 010390          339 SSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY-TVRLWSLENSRCSSMRSPSSVRRRVMAIPST  417 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  417 (512)
                      +.|.+-++||..+.+.. .++. -+.+|++.+++|.....++-|+.+- .|.-=+...|+....+-..            
T Consensus       209 s~Dttakl~D~~tl~v~-Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~------------  274 (327)
T KOG0643|consen  209 SKDTTAKLVDVRTLEVL-KTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHL------------  274 (327)
T ss_pred             ccCccceeeeccceeeE-EEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHH------------
Confidence            99999999999987653 3443 4679999999998733444444432 2222222233222111100            


Q ss_pred             hhcccccCCCCcccccCCCCcCCCchhcccCCCC
Q 010390          418 ECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSS  451 (512)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  451 (512)
                      -..+-+..-.+++..++ .++|+|||+..+++..
T Consensus       275 i~eEEigrvkGHFGPIN-svAfhPdGksYsSGGE  307 (327)
T KOG0643|consen  275 IFEEEIGRVKGHFGPIN-SVAFHPDGKSYSSGGE  307 (327)
T ss_pred             HHHHHhccccccccCcc-eeEECCCCcccccCCC
Confidence            01122334456777888 8999999998887743

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.9e-28  Score=206.69  Aligned_cols=253  Identities=16%  Similarity=0.271  Sum_probs=203.7

Q ss_pred             ceeccccCCCcEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390          100 RISDWVAHQNAIFDLCWIKED-TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      -+..+.+|.+.|.+++=+|.. ..+++|+.||.|+|||+.+..+..++..|.+.|..|++..   ..+++++.|.+|+.|
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQW  134 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeee
Confidence            466778999999999999976 7789999999999999999999999999999999999986   568999999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      .++.. ...                            .......+..+.-+..+..++++|   -.|.|||......+..
T Consensus       135 k~~~~-p~~----------------------------tilg~s~~~gIdh~~~~~~FaTcG---e~i~IWD~~R~~Pv~s  182 (433)
T KOG0268|consen  135 KIDGP-PLH----------------------------TILGKSVYLGIDHHRKNSVFATCG---EQIDIWDEQRDNPVSS  182 (433)
T ss_pred             eccCC-cce----------------------------eeeccccccccccccccccccccC---ceeeecccccCCccce
Confidence            98753 111                            112234566677666677777654   4699999987666553


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  337 (512)
                                 +.-....|.++.|+|... .|+++..|+.|.+||++.........+. .    ....++|+|.+--+++
T Consensus       183 -----------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-m----RTN~IswnPeafnF~~  246 (433)
T KOG0268|consen  183 -----------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-M----RTNTICWNPEAFNFVA  246 (433)
T ss_pred             -----------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-c----cccceecCccccceee
Confidence                       333445689999999765 5667779999999999875432222222 2    1234899998888899


Q ss_pred             ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccC
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSP  404 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  404 (512)
                      |++|..++.||++....++....+|.+.|.+++|+|.| +-+++||.|.+|+||....+....+...
T Consensus       247 a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYht  312 (433)
T KOG0268|consen  247 ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHT  312 (433)
T ss_pred             ccccccceehhhhhhcccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhH
Confidence            99999999999999888888999999999999999999 8999999999999999998886665443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=3.4e-27  Score=208.45  Aligned_cols=284  Identities=17%  Similarity=0.224  Sum_probs=228.5

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc--cCCCcEEEEEEecCCCEEE
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV--AHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~  124 (512)
                      -.|-..|.+++.   |...+++.||+ .|.|+|||+.....          ..++..+.  ...+-|+++..+|||+.|+
T Consensus       416 L~HGEvVcAvtI---S~~trhVyTgG-kgcVKVWdis~pg~----------k~PvsqLdcl~rdnyiRSckL~pdgrtLi  481 (705)
T KOG0639|consen  416 LAHGEVVCAVTI---SNPTRHVYTGG-KGCVKVWDISQPGN----------KSPVSQLDCLNRDNYIRSCKLLPDGRTLI  481 (705)
T ss_pred             hccCcEEEEEEe---cCCcceeEecC-CCeEEEeeccCCCC----------CCccccccccCcccceeeeEecCCCceEE
Confidence            347888888888   77888999988 67899999975422          22233332  3457899999999999999


Q ss_pred             EEeCCCcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          125 TASGDQTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      +|+.-.++.|||+.....  ...+....-...+++.+||. ++.++++.||.|.|||+.+...                 
T Consensus       482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~-----------------  543 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTL-----------------  543 (705)
T ss_pred             eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEccccee-----------------
Confidence            999999999999987643  33444444567789999987 8999999999999999986544                 


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ  282 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (512)
                                ++.+.+|...+.||..+++|..|.+ |+-|.+|+.||+++++.+..            ......|.++..
T Consensus       544 ----------VrqfqGhtDGascIdis~dGtklWT-GGlDntvRcWDlregrqlqq------------hdF~SQIfSLg~  600 (705)
T KOG0639|consen  544 ----------VRQFQGHTDGASCIDISKDGTKLWT-GGLDNTVRCWDLREGRQLQQ------------HDFSSQIFSLGY  600 (705)
T ss_pred             ----------eecccCCCCCceeEEecCCCceeec-CCCccceeehhhhhhhhhhh------------hhhhhhheeccc
Confidence                      3367789999999999999999998 55899999999999887643            333456999999


Q ss_pred             CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390          283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH  362 (512)
Q Consensus       283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h  362 (512)
                      +|++.+|++|-.++.+.+......+     .+.-+.+++.|.++.|.+.|+++++.+.|+.+..|...-+...  .....
T Consensus       601 cP~~dWlavGMens~vevlh~skp~-----kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi--FqskE  673 (705)
T KOG0639|consen  601 CPTGDWLAVGMENSNVEVLHTSKPE-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKE  673 (705)
T ss_pred             CCCccceeeecccCcEEEEecCCcc-----ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce--eeccc
Confidence            9999999999999999988865432     2333445677899999999999999999999999998877652  22234


Q ss_pred             cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          363 DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      ...|.++..+.|+ ++++||+.|....||.+
T Consensus       674 ~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  674 SSSVLSCDISFDD-KYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCcceeeeeccCc-eEEEecCCCcceEEEEE
Confidence            6789999999999 89999999998888875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7e-26  Score=180.11  Aligned_cols=263  Identities=19%  Similarity=0.247  Sum_probs=204.1

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-  119 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-  119 (512)
                      .+....+.|.+.|+|++|   ||+|.+||+|+.|.+|++--.+.....        ....-..+.-|.+.|..++|..+ 
T Consensus        80 v~~kr~khhkgsiyc~~w---s~~geliatgsndk~ik~l~fn~dt~~--------~~g~dle~nmhdgtirdl~fld~~  148 (350)
T KOG0641|consen   80 VLCKRNKHHKGSIYCTAW---SPCGELIATGSNDKTIKVLPFNADTCN--------ATGHDLEFNMHDGTIRDLAFLDDP  148 (350)
T ss_pred             EEeeeccccCccEEEEEe---cCccCeEEecCCCceEEEEeccccccc--------ccCcceeeeecCCceeeeEEecCC
Confidence            455667789999999999   999999999999999999876544321        11223456779999999999763 


Q ss_pred             ---CCEEEEEeC-CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          120 ---DTNILTASG-DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       120 ---~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                         +..|++++. |..|++-|-..|+..+.+.+|.+.|.++- +-.+ .++++|+.|.+|++||++-..+......... 
T Consensus       149 ~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~-  225 (350)
T KOG0641|consen  149 ESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFH-  225 (350)
T ss_pred             CcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCccc-
Confidence               456776554 77888889999999999999999998873 2234 8999999999999999986655443221100 


Q ss_pred             eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                         ........|.+++..|.|+.+++ |..|....+||++.++.+.           .+..|..
T Consensus       226 -------------------~~glessavaav~vdpsgrll~s-g~~dssc~lydirg~r~iq-----------~f~phsa  274 (350)
T KOG0641|consen  226 -------------------DGGLESSAVAAVAVDPSGRLLAS-GHADSSCMLYDIRGGRMIQ-----------RFHPHSA  274 (350)
T ss_pred             -------------------CCCcccceeEEEEECCCcceeee-ccCCCceEEEEeeCCceee-----------eeCCCcc
Confidence                               00112357999999999998876 7789999999999988776           4677788


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC--ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      .|.++.|+|...++++++.|..|++-|+...-..  ++.....|  ...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus       275 dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  275 DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceEEEEecCccceeeeccCcceEEEeccC
Confidence            9999999999999999999999999998653222  22233333  3446678999999889999999999999764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.7e-27  Score=212.56  Aligned_cols=258  Identities=15%  Similarity=0.271  Sum_probs=205.5

Q ss_pred             CCCcEE---EEEEec-CCCEEEEEeCCCcEEEEeCCCCe------eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390          107 HQNAIF---DLCWIK-EDTNILTASGDQTIKIWDAEKKK------CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFA  176 (512)
Q Consensus       107 h~~~V~---~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  176 (512)
                      |...|.   .+..+. .+++|+|||.||.|++|++....      .+..++.|.+.|+.+....++ +.|++++.|-+|+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVK   98 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEE
Confidence            444444   444443 67789999999999999986532      467888999999999988877 7999999999999


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ  256 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~  256 (512)
                      +|+.....                         .-.+..+..|...|.|+++....+.++++|+.|+.|.+||++++...
T Consensus        99 ~W~~~~~~-------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~  153 (735)
T KOG0308|consen   99 VWNAHKDN-------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT  153 (735)
T ss_pred             EeecccCc-------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh
Confidence            99987543                         12233667899999999995555566666779999999999987442


Q ss_pred             ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390          257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL  336 (512)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  336 (512)
                      ...............++..+|++++.++.|..+++|+.++.|++||.++  ...+..+.+|.  ..+..+..++||..++
T Consensus       154 l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt--~~kimkLrGHT--dNVr~ll~~dDGt~~l  229 (735)
T KOG0308|consen  154 LVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT--CKKIMKLRGHT--DNVRVLLVNDDGTRLL  229 (735)
T ss_pred             hhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc--ccceeeeeccc--cceEEEEEcCCCCeEe
Confidence            2111111111112237888999999999999999999999999999877  34556666775  4477789999999999


Q ss_pred             EecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       337 ~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      +++.||+|++||+...++ +.++..|+..|+++..+|+- ..+.+|+.||.|..=|+.+.
T Consensus       230 s~sSDgtIrlWdLgqQrC-l~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  230 SASSDGTIRLWDLGQQRC-LATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ecCCCceEEeeeccccce-eeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCc
Confidence            999999999999988777 57799999999999999988 89999999999999999984

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=3.9e-25  Score=204.02  Aligned_cols=280  Identities=12%  Similarity=0.095  Sum_probs=196.1

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCeee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI-LTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~  143 (512)
                      ++++++++.|+.|++||..++..             +..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~-------------~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~   66 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEV-------------TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI   66 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCce-------------EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            35788999999999999876532             44455443 46789999999877 56778899999999999887


Q ss_pred             ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390          144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI  223 (512)
Q Consensus       144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (512)
                      ..+..+. .+..++|+|++..++++++.|+.|++||+++.+.....                            .....+
T Consensus        67 ~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~----------------------------~~~~~~  117 (300)
T TIGR03866        67 GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI----------------------------PVGVEP  117 (300)
T ss_pred             EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe----------------------------eCCCCc
Confidence            7776544 35678999998434455667899999999864322111                            112246


Q ss_pred             EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEE
Q 010390          224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYN  302 (512)
Q Consensus       224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d  302 (512)
                      .+++|+|++..++++...+..+.+||.++.+.....            .....+..++|++++++|++++ .++.|++||
T Consensus       118 ~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d  185 (300)
T TIGR03866       118 EGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV------------LVDQRPRFAEFTADGKELWVSSEIGGTVSVID  185 (300)
T ss_pred             ceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE------------EcCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence            789999999998886643346778898876543321            1122356799999999886554 689999999


Q ss_pred             cccCCCCceEeeeec---eeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCe
Q 010390          303 VLQLDKGPIQHFSGC---RIESFYVKSEICPNASHILS-GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGK  378 (512)
Q Consensus       303 ~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~  378 (512)
                      +.+.+......+...   ........++|+|+++++++ .+.++.+.+||+.+.+.. ... .+...+.+++|+|++ .+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~-~~~~~~~~~~~~~~g-~~  262 (300)
T TIGR03866       186 VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYL-LVGQRVWQLAFTPDE-KY  262 (300)
T ss_pred             cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEE-EeCCCcceEEECCCC-CE
Confidence            976432111111110   01112345789999998644 445678999999876542 222 344579999999999 67


Q ss_pred             EEEE-eCCCcEEEEeCCCCcccccc
Q 010390          379 IVTS-SDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       379 l~s~-~~dg~i~vwd~~~~~~~~~~  402 (512)
                      |+++ +.+|.|++||+.+++++..+
T Consensus       263 l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       263 LLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEE
Confidence            7765 57999999999999877654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.9e-26  Score=200.24  Aligned_cols=308  Identities=19%  Similarity=0.258  Sum_probs=229.4

Q ss_pred             ceeeeeeEeecCCc-cCCcceEEEEEecCCCcEEEEe-eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEE
Q 010390           36 FTEIGAVTVEHHGE-ETPPLAVSFCKTSKNSHIFAVS-DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFD  113 (512)
Q Consensus        36 ~~~~~~~~~~~~gh-~~~v~~v~~~~~s~~~~~latg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  113 (512)
                      ....|.....++|- ...-.++...    ++.|++++ .....|.+|.+.....             .....--.+.|.+
T Consensus        24 dl~TGt~~~~ykg~~~a~~~sl~~l----~~~yllsaq~~rp~l~vw~i~k~~~-------------~~q~~v~Pg~v~a   86 (476)
T KOG0646|consen   24 DLRTGTSLLQYKGSYLAQAASLTAL----NNEYLLSAQLKRPLLHVWEILKKDQ-------------VVQYIVLPGPVHA   86 (476)
T ss_pred             ecCCCceeEEecCcccccchhhhhh----chhheeeecccCccccccccCchhh-------------hhhhcccccceee
Confidence            34455555555554 3333333331    23556555 4455799999865532             2222334678999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          114 LCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       114 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      ++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+-++ .+|++|+.||.|.+|++..--....     
T Consensus        87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~-----  160 (476)
T KOG0646|consen   87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADN-----  160 (476)
T ss_pred             eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeeccccc-----
Confidence            9999999999999899999999999999999999999999999999988 9999999999999999753211110     


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE  271 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  271 (512)
                                   ....+....+..|.-+|+++...+.  ...+++++ .|.++++||+..+..+.....+         
T Consensus       161 -------------~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LLlti~fp---------  217 (476)
T KOG0646|consen  161 -------------DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLLLTITFP---------  217 (476)
T ss_pred             -------------CCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceeeEEEecC---------
Confidence                         0023445577889999999988765  44566644 8999999999999887665444         


Q ss_pred             ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC--------------CCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390          272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD--------------KGPIQHFSGCRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       272 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  337 (512)
                         ..+.+++.+|.+..+++|+.+|.|.+.++....              ...+..+.++.....|+|++++-||.+|++
T Consensus       218 ---~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS  294 (476)
T KOG0646|consen  218 ---SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS  294 (476)
T ss_pred             ---CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence               349999999999999999999999999975543              223455667777678999999999999999


Q ss_pred             ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      |+.||.|+|||+.+.++ ++++....++|+.+.+.|-.+..+..-.....+-.|++
T Consensus       295 Gd~dg~VcvWdi~S~Q~-iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  295 GDEDGKVCVWDIYSKQC-IRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             eCCCCCEEEEecchHHH-HHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence            99999999999998776 45665568899999997755333433333344444443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.95  E-value=4.7e-26  Score=191.00  Aligned_cols=310  Identities=16%  Similarity=0.302  Sum_probs=231.9

Q ss_pred             cCCccCCcceEEEEEecCCC--cEEEEeeCCCcEEEEECCCCCCccccccccccccceecc--ccCCCcEEEEEEecC--
Q 010390           46 HHGEETPPLAVSFCKTSKNS--HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW--VAHQNAIFDLCWIKE--  119 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~--~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~s~~--  119 (512)
                      ..+|..+|++++|.+++.-+  ..+|+.+.+ .+.||+......          ...++.+  ..|.+..+.++|+-+  
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~----------ir~lq~y~D~d~~Esfytcsw~yd~~  102 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGG----------IRLLQSYADEDHDESFYTCSWSYDSN  102 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccc----------eeeeeeccCCCCCcceEEEEEEecCC
Confidence            45689999999998776544  467777754 799998765421          1112222  247788999999874  


Q ss_pred             --CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          120 --DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       120 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                        ..+||.|+.-|.|+|.|+.++++...+.+|...|+.|.++|+.++++++++.|..|++|++++..++..+.       
T Consensus       103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-------  175 (385)
T KOG1034|consen  103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-------  175 (385)
T ss_pred             CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec-------
Confidence              45788999999999999999999999999999999999999999999999999999999999876654331       


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC-----------Ccc-
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP-----------HAE-  265 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~-----------~~~-  265 (512)
                                       -..+|...|.++.|+.++..++++| .|..|++|++...+........           .+. 
T Consensus       176 -----------------G~egHrdeVLSvD~~~~gd~i~ScG-mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~  237 (385)
T KOG1034|consen  176 -----------------GVEGHRDEVLSVDFSLDGDRIASCG-MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP  237 (385)
T ss_pred             -----------------ccccccCcEEEEEEcCCCCeeeccC-CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence                             3458899999999999999998866 8999999999954322211111           000 


Q ss_pred             -----ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC------------ceEeeeeceeceeEEEEEE
Q 010390          266 -----SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG------------PIQHFSGCRIESFYVKSEI  328 (512)
Q Consensus       266 -----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------~~~~~~~~~~~~~~~~~~~  328 (512)
                           .-.....|...|.|+.|-  |.++++-+.++.|..|.....+..            .+..+.-.....+....+|
T Consensus       238 ~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~  315 (385)
T KOG1034|consen  238 KTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF  315 (385)
T ss_pred             ccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence                 001234566667777775  478999999999999987322111            1222233334455677888


Q ss_pred             CCCCCEEEEecCCCCEEEEecCCCCCCC-ceeccc--cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          329 CPNASHILSGSSDGNAYVWQVNKPQADP-IKLKSH--DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       329 s~~~~~l~~g~~dg~i~iw~~~~~~~~~-~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      .|-+++||.|...|.|++||++...... .++..+  ...|...+|+.|+ .+|+...+|++|.-||..
T Consensus       316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence            9999999999999999999998776532 233222  4579999999999 899999999999999864

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.2e-25  Score=185.34  Aligned_cols=268  Identities=19%  Similarity=0.297  Sum_probs=194.2

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CCCEE
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--EDTNI  123 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~~l  123 (512)
                      -.||.+-|.+|.|   .+-|+.+|+|+.|+.|+|||.++...         .-.....++.|.+.|..+.|.+  -|+.+
T Consensus         9 ~s~h~DlihdVs~---D~~GRRmAtCSsDq~vkI~d~~~~s~---------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvv   76 (361)
T KOG2445|consen    9 DSGHKDLIHDVSF---DFYGRRMATCSSDQTVKIWDSTSDSG---------TWSCTSSWRAHDGSIWRVVWAHPEFGQVV   76 (361)
T ss_pred             ccCCcceeeeeee---cccCceeeeccCCCcEEEEeccCCCC---------ceEEeeeEEecCCcEEEEEecCccccceE
Confidence            3578999999999   99999999999999999999765432         2244677899999999999976  68999


Q ss_pred             EEEeCCCcEEEEeCCCC---------eeeecccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          124 LTASGDQTIKIWDAEKK---------KCTGALMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      |+++.|+++.||.-...         ....++......|+.+.|.|.. +-.|++++.||.||||+.-..-.        
T Consensus        77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n--------  148 (361)
T KOG2445|consen   77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN--------  148 (361)
T ss_pred             EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc--------
Confidence            99999999999975211         2345566677899999999853 36789999999999998753221        


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR  273 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  273 (512)
                                                                         +.-|.+...-.....         ....+
T Consensus       149 ---------------------------------------------------Ls~W~Lq~Ei~~~~~---------pp~~~  168 (361)
T KOG2445|consen  149 ---------------------------------------------------LSQWTLQHEIQNVID---------PPGKN  168 (361)
T ss_pred             ---------------------------------------------------cccchhhhhhhhccC---------Ccccc
Confidence                                                               222322211100000         12223


Q ss_pred             ccCeeEEEeCCC---CCEEEEEecC-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC----CCEEEEecCC
Q 010390          274 LHGISSLSQDSN---GVFLTASCMD-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN----ASHILSGSSD  341 (512)
Q Consensus       274 ~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~~g~~d  341 (512)
                      .....|+.|++.   ..+|++|+.+     +.++||.......+-.....-..+..+|..++|.|+    ...||+++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence            344667777753   3567777765     588899875543333322222245678999999997    3578999999


Q ss_pred             CCEEEEecCCCC-------------------CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          342 GNAYVWQVNKPQ-------------------ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       342 g~i~iw~~~~~~-------------------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      | |+||.+....                   ..+..+..|.+.|..+.|+-.| ..|++.|+||.||+|...-
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhh
Confidence            9 9999987411                   1123467899999999999999 8999999999999998653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=6.8e-25  Score=207.77  Aligned_cols=287  Identities=15%  Similarity=0.182  Sum_probs=221.2

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA  126 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~  126 (512)
                      ..|++.-+.|+|   .|+|.+|.+++.||.|++|+......            .-..+.-+...|.+++.  ++.+|++|
T Consensus        10 yaht~G~t~i~~---d~~gefi~tcgsdg~ir~~~~~sd~e------------~P~ti~~~g~~v~~ia~--~s~~f~~~   72 (933)
T KOG1274|consen   10 YAHTGGLTLICY---DPDGEFICTCGSDGDIRKWKTNSDEE------------EPETIDISGELVSSIAC--YSNHFLTG   72 (933)
T ss_pred             hhccCceEEEEE---cCCCCEEEEecCCCceEEeecCCccc------------CCchhhccCceeEEEee--cccceEEe
Confidence            457777778888   99999999999999999999765421            01112227788888876  45699999


Q ss_pred             eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          127 SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      +.+++|.+|.+..++.-..+....-++.+++|+.+| .+++.|+.|-.|++-++.+....                    
T Consensus        73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~--------------------  131 (933)
T KOG1274|consen   73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQE--------------------  131 (933)
T ss_pred             eccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchh--------------------
Confidence            999999999999988776676677899999999988 89999999999999998765433                    


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc-ccCeeEEEeCCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR-LHGISSLSQDSN  285 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~  285 (512)
                             ..+.+|..+|.++.|+|++..|+++. -||.|++||+.++...........    ..... ...+..++|+|+
T Consensus       132 -------~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~iw~~~~~~~~~tl~~v~k----~n~~~~s~i~~~~aW~Pk  199 (933)
T KOG1274|consen  132 -------KVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQIWDLQDGILSKTLTGVDK----DNEFILSRICTRLAWHPK  199 (933)
T ss_pred             -------eeecccCCceeeeeEcCCCCEEEEEe-cCceEEEEEcccchhhhhcccCCc----cccccccceeeeeeecCC
Confidence                   36778999999999999999999866 599999999998876654432222    11111 455788999999


Q ss_pred             CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCC
Q 010390          286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGE  365 (512)
Q Consensus       286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~  365 (512)
                      +..|++.+.|+.|.+|+....+.  ...+........+..++|+|+|+|||+++.||.|.|||.++-..     ......
T Consensus       200 ~g~la~~~~d~~Vkvy~r~~we~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~  272 (933)
T KOG1274|consen  200 GGTLAVPPVDNTVKVYSRKGWEL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRA  272 (933)
T ss_pred             CCeEEeeccCCeEEEEccCCcee--heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccce
Confidence            88899999999999999876543  33444433444488899999999999999999999999987211     223568


Q ss_pred             eEEEEeCCCCCCeEEEEeCCCcEEEE
Q 010390          366 VTAVNWCPNEAGKIVTSSDDYTVRLW  391 (512)
Q Consensus       366 v~~v~~~~~~~~~l~s~~~dg~i~vw  391 (512)
                      |++++|.|+. ..+-.-..-|...+|
T Consensus       273 Vc~~aw~p~~-n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  273 VCCEAWKPNA-NAITLITALGTLGVS  297 (933)
T ss_pred             eEEEecCCCC-CeeEEEeeccccccC
Confidence            9999999998 444333334443333

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.7e-25  Score=193.16  Aligned_cols=288  Identities=15%  Similarity=0.189  Sum_probs=221.9

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC-EEEEEeC
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT-NILTASG  128 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~  128 (512)
                      .+.|++|.|   +|...+|.+++.||.++||.++....           ..++.+.--..+|.+.+|.|+|. .+++++.
T Consensus       213 ~~~I~sv~F---Hp~~plllvaG~d~~lrifqvDGk~N-----------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r  278 (514)
T KOG2055|consen  213 HGGITSVQF---HPTAPLLLVAGLDGTLRIFQVDGKVN-----------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR  278 (514)
T ss_pred             cCCceEEEe---cCCCceEEEecCCCcEEEEEecCccC-----------hhheeeeeccCccceeeecCCCceEEEeccc
Confidence            467888888   99999999999999999999986543           34666666678999999999999 8889999


Q ss_pred             CCcEEEEeCCCCeeee--cccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          129 DQTIKIWDAEKKKCTG--ALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~--~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      ...++.||+.+.+...  ...++. ..+.....++++ ++|+..+..|.|.+.-..+++.+...                
T Consensus       279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~----------------  341 (514)
T KOG2055|consen  279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSF----------------  341 (514)
T ss_pred             ceEEEEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhee----------------
Confidence            9999999999886543  333443 356677889988 89999999999999988877765544                


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                                  ...+.|..++|+.+++.++++| .+|.|.+||++...+......          ...-.-++++.+++
T Consensus       342 ------------KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~~~~rf~D----------~G~v~gts~~~S~n  398 (514)
T KOG2055|consen  342 ------------KIEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNSCLHRFVD----------DGSVHGTSLCISLN  398 (514)
T ss_pred             ------------eeccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcceEEEEee----------cCccceeeeeecCC
Confidence                        2356799999999999999877 589999999999877654321          11123467888899


Q ss_pred             CCEEEEEecCCeEEEEEccc----CCCCceEeeeeceeceeEEEEEECCCCCEEEEecC--CCCEEEEecCCCCCCCc--
Q 010390          286 GVFLTASCMDHRIYLYNVLQ----LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS--DGNAYVWQVNKPQADPI--  357 (512)
Q Consensus       286 ~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iw~~~~~~~~~~--  357 (512)
                      +.+||+|+..|.|.|||..+    ...+++..+.  .....|..++|+++.+.||.++.  +..+++-.+.+.....-  
T Consensus       399 g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d--NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP  476 (514)
T KOG2055|consen  399 GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD--NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP  476 (514)
T ss_pred             CceEEeccCcceEEEeccchhhccCCCCchhhhh--hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC
Confidence            99999999999999999643    2233443333  23456888999999999987775  56788887765322100  


Q ss_pred             eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      .....-+.|+|++|+|.+ .+|+.|..+|.+.+|.+.
T Consensus       477 ~~n~~vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  477 TSNTKVGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCCCcccceEEEEecCCC-ceEEeecCCCceeeEeec
Confidence            112223569999999998 899999999999999874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=1.8e-25  Score=190.85  Aligned_cols=287  Identities=20%  Similarity=0.333  Sum_probs=211.3

Q ss_pred             eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccc---ccccccccceeccccCCCcEEEEE
Q 010390           39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFAC---HRENAEKARISDWVAHQNAIFDLC  115 (512)
Q Consensus        39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~V~~l~  115 (512)
                      ...+.....+|.+.++.|...++. +..+.|+=+..|.|.||++......+..   .....+..++.++.+|+..=++++
T Consensus       140 ~P~~~~~~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld  218 (440)
T KOG0302|consen  140 KPQIEMKSIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD  218 (440)
T ss_pred             cccccccccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence            456667778899999999884432 4457777799999999998654322111   122356678999999999999999


Q ss_pred             Eec-CCCEEEEEeCCCcEEEEeCCCCee---eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          116 WIK-EDTNILTASGDQTIKIWDAEKKKC---TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       116 ~s~-~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      ||| ....|++|..-+.|++|...++.-   ...+.+|+..|..++|+|.....|++|+.||+|+|||++.+......  
T Consensus       219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~--  296 (440)
T KOG0302|consen  219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV--  296 (440)
T ss_pred             cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee--
Confidence            999 333588888889999999988753   34567799999999999998899999999999999999977433321  


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE  271 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  271 (512)
                                             ..++|.+.|+-|.|+.... ++++|++||+++|||++..+..        .+...+.
T Consensus       297 -----------------------~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~--------~pVA~fk  344 (440)
T KOG0302|consen  297 -----------------------STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG--------QPVATFK  344 (440)
T ss_pred             -----------------------EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC--------CcceeEE
Confidence                                   3368899999999999888 5556889999999999976543        1222688


Q ss_pred             ccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          272 TRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       272 ~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      .|..+|+++.|+|. ...+++++.|.+|.+||+.-.                       ++..-...-...+   +-|+ 
T Consensus       345 ~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE-----------------------~D~ee~~~~a~~~---L~dl-  397 (440)
T KOG0302|consen  345 YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE-----------------------ADEEEIDQEAAEG---LQDL-  397 (440)
T ss_pred             eccCCeeEEEeccccCceEEeccCCCcEEEEEeecc-----------------------CChhhhccccccc---hhcC-
Confidence            89999999999985 457888889999999997431                       1100000000011   1122 


Q ss_pred             CCCCCCceeccc--cCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          351 KPQADPIKLKSH--DGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       351 ~~~~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                          +...+.-|  ...|..+.|++.-+.+|++.+.|| +.||.
T Consensus       398 ----PpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  398 ----PPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             ----CceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence                23344445  346888999999889999999998 55553

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.5e-25  Score=195.21  Aligned_cols=284  Identities=17%  Similarity=0.237  Sum_probs=209.8

Q ss_pred             EEeeCCC-cEEEEECCCCCCccccccccccccceeccccC-CCcEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCeeeec
Q 010390           69 AVSDEDG-YVSLFDSRRKLPSFACHRENAEKARISDWVAH-QNAIFDLCWIKEDTNILTASG-DQTIKIWDAEKKKCTGA  145 (512)
Q Consensus        69 atg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~  145 (512)
                      .+++.|. .+.+||++++..             ..++++. ...-.++..- .+.+++++.. ...|.+|.+........
T Consensus        11 sssS~d~~~~~~~dl~TGt~-------------~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q   76 (476)
T KOG0646|consen   11 SSSSFDPINCIVWDLRTGTS-------------LLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQ   76 (476)
T ss_pred             eccCCCCcceeEEecCCCce-------------eEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhh
Confidence            3344444 499999998854             2333332 1111111111 3356665544 45799999876655543


Q ss_pred             ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      ..--.++|.+++-+|.| .+|+.|+..|.|++|.+.++..+.                           .+.+|...|+|
T Consensus        77 ~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~---------------------------v~~aHYQ~ITc  128 (476)
T KOG0646|consen   77 YIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLN---------------------------VLSAHYQSITC  128 (476)
T ss_pred             hcccccceeeeecCCCc-eEEEeecccCcEEEEEeccccHHH---------------------------HHHhhccceeE
Confidence            33356789999999988 888888899999999999887655                           44678889999


Q ss_pred             EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC--CEEEEEecCCeEEEEEc
Q 010390          226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG--VFLTASCMDHRIYLYNV  303 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~  303 (512)
                      +.|+.|+..+++ |+.||.|.+|++...-.....  ....+...+..|.-+|+.+...+.|  .+|++++.|.++++||+
T Consensus       129 L~fs~dgs~iiT-gskDg~V~vW~l~~lv~a~~~--~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl  205 (476)
T KOG0646|consen  129 LKFSDDGSHIIT-GSKDGAVLVWLLTDLVSADND--HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL  205 (476)
T ss_pred             EEEeCCCcEEEe-cCCCccEEEEEEEeecccccC--CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence            999999999998 558999999987643222111  1223334678899999999988764  58999999999999999


Q ss_pred             ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC---------------CCCceeccccC--Ce
Q 010390          304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ---------------ADPIKLKSHDG--EV  366 (512)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~---------------~~~~~~~~h~~--~v  366 (512)
                      ..+..  +..+   .....+.+++.+|-++.+++|+.+|.|.+.++....               .....+.+|.+  .|
T Consensus       206 S~g~L--Llti---~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I  280 (476)
T KOG0646|consen  206 SLGVL--LLTI---TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI  280 (476)
T ss_pred             cccee--eEEE---ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence            76432  2222   122457789999999999999999999998876432               11235678887  99


Q ss_pred             EEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          367 TAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       367 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      +|++.+-|| .+|++|+.||.|+|||+.+.+++++..
T Consensus       281 TcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  281 TCLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             eEEEEecCc-cEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            999999999 999999999999999999999999866

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1e-25  Score=196.48  Aligned_cols=267  Identities=19%  Similarity=0.275  Sum_probs=200.0

Q ss_pred             cCCcceEEEEEe----cCCCcEEEEeeCCCcEEEEECCCCCCcccccccc---c-----cccceeccccCCCcEEEEEEe
Q 010390           50 ETPPLAVSFCKT----SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHREN---A-----EKARISDWVAHQNAIFDLCWI  117 (512)
Q Consensus        50 ~~~v~~v~~~~~----s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~---~-----~~~~~~~~~~h~~~V~~l~~s  117 (512)
                      ...+.|+.|..+    ..-|+|+|.|+.|..|.|||+.-....+.+....   .     ..+.-..-.+|+..|.+++|+
T Consensus       173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            345678888665    1235799999999999999986544333322111   0     111122235799999999998


Q ss_pred             cC-CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          118 KE-DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       118 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      .+ ...||+|+.|.+|++||+.++++..++..|.+.|.++.|+|..+..|++|+.|++|.+.|.+......         
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---------  323 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---------  323 (463)
T ss_pred             cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---------
Confidence            84 45678999999999999999999999999999999999999999999999999999999998533221         


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                        ..-...+.|..++|.|.....+.++..||.|+-+|+|+......          ....|..+
T Consensus       324 ------------------~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw----------t~~AHd~~  375 (463)
T KOG0270|consen  324 ------------------KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW----------TLKAHDDE  375 (463)
T ss_pred             ------------------ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee----------EEEeccCC
Confidence                              11123568999999999998888899999999999998753322          68899999


Q ss_pred             eeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCCC
Q 010390          277 ISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       277 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      |.++++++. ..+|++++.|+.+++|++.......+..... . -....|+++.|+-. +++.|+..+.++|||+.+...
T Consensus       376 ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~-~-~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  376 ISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF-K-LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             cceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc-c-ccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            999999875 4578899999999999986544332221111 1 11245567777754 567888888899999987654


Q ss_pred             C
Q 010390          355 D  355 (512)
Q Consensus       355 ~  355 (512)
                      .
T Consensus       454 V  454 (463)
T KOG0270|consen  454 V  454 (463)
T ss_pred             H
Confidence            3

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=7.2e-25  Score=201.83  Aligned_cols=315  Identities=16%  Similarity=0.223  Sum_probs=234.3

Q ss_pred             EecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-----------CCEEEEEeC
Q 010390           60 KTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-----------DTNILTASG  128 (512)
Q Consensus        60 ~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-----------~~~l~s~~~  128 (512)
                      .|++..+.|.+...|..++|||+++-..          ......+..|...|+++.-.|.           ...++|++.
T Consensus       331 ~Fdet~~klscVYndhSlYvWDvrD~~k----------vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs  400 (1080)
T KOG1408|consen  331 QFDETTDKLSCVYNDHSLYVWDVRDVNK----------VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS  400 (1080)
T ss_pred             EecCCCceEEEEEcCceEEEEecccccc----------ccceeeeeeccceeeeeccccccccCcccccCCccceeEecC
Confidence            4588899999999999999999987532          2335556679999998887661           234889999


Q ss_pred             CCcEEEEeCCCCe---ee----------------------------------ecccCcCCCEEEEEeeCCCCCeEEEEeC
Q 010390          129 DQTIKIWDAEKKK---CT----------------------------------GALMGHTGSIKSLCSHPTNSDILVSGSR  171 (512)
Q Consensus       129 dg~i~iwd~~~~~---~~----------------------------------~~~~~h~~~v~~l~~~~~~~~~l~s~~~  171 (512)
                      |++|++||+..+.   ..                                  ...-+....+.+++.+|++ ++|++|..
T Consensus       401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr  479 (1080)
T KOG1408|consen  401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDR  479 (1080)
T ss_pred             CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCc
Confidence            9999999987531   00                                  0001134579999999998 99999999


Q ss_pred             CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEe
Q 010390          172 DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWD  249 (512)
Q Consensus       172 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd  249 (512)
                      -|+|++|++.+.+...                           ...+|+..|.|+.|+..  +..|+++++.|..|.+||
T Consensus       480 ~GnlrVy~Lq~l~~~~---------------------------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D  532 (1080)
T KOG1408|consen  480 GGNLRVYDLQELEYTC---------------------------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD  532 (1080)
T ss_pred             cCceEEEEehhhhhhh---------------------------heecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence            9999999998654332                           55689999999999752  445666677999999999


Q ss_pred             ccCccceecccCCCccccccccccccCeeEEEeCCCC--CEEEEEecCCeEEEEEcccCCCCceEee-eeceeceeEEEE
Q 010390          250 TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG--VFLTASCMDHRIYLYNVLQLDKGPIQHF-SGCRIESFYVKS  326 (512)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~  326 (512)
                      ....-.+..          .+.+|...|+++.|..+|  ..+++++.|..|.+--........+..- ........+..+
T Consensus       533 v~rny~l~q----------tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm  602 (1080)
T KOG1408|consen  533 VKRNYDLVQ----------TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM  602 (1080)
T ss_pred             cccccchhh----------hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence            986554443          578888999999998877  6888998997765433222111111111 111123457789


Q ss_pred             EECCCCCEEEEecCCCCEEEEecCCCCCCCcee---ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          327 EICPNASHILSGSSDGNAYVWQVNKPQADPIKL---KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      +..|..+++++++.|..|+||++.+++.. ..+   .+|++...-+...|.| .||++...|.++.++|+.+|+|+....
T Consensus       603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEcvA~m~  680 (1080)
T KOG1408|consen  603 AVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGECVAQMT  680 (1080)
T ss_pred             eeCCCcceEEEEecccceEEEecccccee-eeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchhhhhhc
Confidence            99999999999999999999999998764 444   4567888899999999 899999999999999999999988633


Q ss_pred             Cccccceeeeeccch-hcccccCC
Q 010390          404 PSSVRRRVMAIPSTE-CRKLFMNG  426 (512)
Q Consensus       404 ~~~~~~~~~~~~~~~-~~~~~~~~  426 (512)
                        .+...++-+.+.+ |.+++...
T Consensus       681 --GHsE~VTG~kF~nDCkHlISvs  702 (1080)
T KOG1408|consen  681 --GHSEAVTGVKFLNDCKHLISVS  702 (1080)
T ss_pred             --Ccchheeeeeecccchhheeec
Confidence              3444555555554 55555433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=1.7e-24  Score=202.92  Aligned_cols=364  Identities=16%  Similarity=0.156  Sum_probs=261.2

Q ss_pred             cceEEEEEecCCC--cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           53 PLAVSFCKTSKNS--HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        53 v~~v~~~~~s~~~--~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      |.+|.    +|.-  +.++.|+.+|.+.||++++++             .+.+++++...|+++.=+|--+.++.|..+|
T Consensus       162 Ital~----HP~TYLNKIvvGs~~G~lql~Nvrt~K-------------~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G  224 (910)
T KOG1539|consen  162 ITALL----HPSTYLNKIVVGSSQGRLQLWNVRTGK-------------VVYTFQEFFSRITAIEQSPALDVVAIGLENG  224 (910)
T ss_pred             eeeEe----cchhheeeEEEeecCCcEEEEEeccCc-------------EEEEecccccceeEeccCCcceEEEEeccCc
Confidence            66664    3433  578999999999999998874             4889999999999999999888999999999


Q ss_pred             cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390          131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS  210 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (512)
                      +|.|+++..++.+.+++...+.|++++|..||..++++|+..|.+.+||++.......                      
T Consensus       225 ~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v----------------------  282 (910)
T KOG1539|consen  225 TVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV----------------------  282 (910)
T ss_pred             eEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee----------------------
Confidence            9999999999999999855699999999999988999999999999999987654332                      


Q ss_pred             ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC-CCCCEE
Q 010390          211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD-SNGVFL  289 (512)
Q Consensus       211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l  289 (512)
                          ....|.+.+....|.+....+++++ .|..+++|-.+++......       .....+|..+..++.|. .+|..+
T Consensus       283 ----~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~-------LR~R~GHs~Pp~~irfy~~~g~~i  350 (910)
T KOG1539|consen  283 ----TRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRL-------LRSRGGHSAPPSCIRFYGSQGHFI  350 (910)
T ss_pred             ----eeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchh-------eeeccCCCCCchheeeeccCcEEE
Confidence                2336778999999999988888877 5888888876654432111       11345666677777776 566667


Q ss_pred             EEEecCCeEEEEEc-----------------------------------------------------------------c
Q 010390          290 TASCMDHRIYLYNV-----------------------------------------------------------------L  304 (512)
Q Consensus       290 ~~~~~dg~i~i~d~-----------------------------------------------------------------~  304 (512)
                      .+++.|++.+.+++                                                                 +
T Consensus       351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~  430 (910)
T KOG1539|consen  351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR  430 (910)
T ss_pred             EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence            77777766666653                                                                 2


Q ss_pred             cCCCCceEeeee---ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee---ccccCCeEEEEeCCCCCCe
Q 010390          305 QLDKGPIQHFSG---CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL---KSHDGEVTAVNWCPNEAGK  378 (512)
Q Consensus       305 ~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~~  378 (512)
                      +..... ..+..   .+....+++++.++.|++.+.|...|.|.+|++.++-.. ..+   ..|+++|++++...-+ +.
T Consensus       431 n~~~G~-~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r-~sf~~~~ah~~~V~gla~D~~n-~~  507 (910)
T KOG1539|consen  431 NKTSGR-HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR-KSFGDSPAHKGEVTGLAVDGTN-RL  507 (910)
T ss_pred             Cccccc-EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee-cccccCccccCceeEEEecCCC-ce
Confidence            111000 00000   012245678899999999999999999999999988653 334   5899999999998888 89


Q ss_pred             EEEEeCCCcEEEEeCCCCcccccccCccccceeee-----------------eccchhcccccCCCCcccccCCCCcCCC
Q 010390          379 IVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMA-----------------IPSTECRKLFMNGEPGWLAKGSDRSYNS  441 (512)
Q Consensus       379 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p  441 (512)
                      +++++.||.+++||+..+..+...........+..                 +......++.=.-.++...++ +++|+|
T Consensus       508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nrit-d~~FS~  586 (910)
T KOG1539|consen  508 LVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRIT-DMTFSP  586 (910)
T ss_pred             EEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccccee-eeEeCC
Confidence            99999999999999998885554332111111000                 000011111111122334455 899999


Q ss_pred             chhcccCCCCCCCCCCeecCchhhccCCCCc
Q 010390          442 DDVLNQINSSDPKNMPIIRTPEAQKKKIPSF  472 (512)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (512)
                      ||+.+.+.+-.. .+..|..+.++..+...+
T Consensus       587 DgrWlisasmD~-tIr~wDlpt~~lID~~~v  616 (910)
T KOG1539|consen  587 DGRWLISASMDS-TIRTWDLPTGTLIDGLLV  616 (910)
T ss_pred             CCcEEEEeecCC-cEEEEeccCcceeeeEec
Confidence            999998875533 456677776665554433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=7.7e-25  Score=191.62  Aligned_cols=305  Identities=17%  Similarity=0.196  Sum_probs=223.1

Q ss_pred             eecCCccCCcceEEEEEecCCC--cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CC
Q 010390           44 VEHHGEETPPLAVSFCKTSKNS--HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-ED  120 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~--~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~  120 (512)
                      ...+-|.++|++++|   +|..  +++|+|..-|.|-+||+.+.++         ....+..+..|..+|.+|.|+| +.
T Consensus       180 ~v~kv~~~Rit~l~f---HPt~~~~lva~GdK~G~VG~Wn~~~~~~---------d~d~v~~f~~hs~~Vs~l~F~P~n~  247 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAF---HPTENRKLVAVGDKGGQVGLWNFGTQEK---------DKDGVYLFTPHSGPVSGLKFSPANT  247 (498)
T ss_pred             ceeEecccceEEEEe---cccCcceEEEEccCCCcEEEEecCCCCC---------ccCceEEeccCCccccceEecCCCh
Confidence            345568999999999   6644  5899999999999999964332         2233667889999999999999 66


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          121 TNILTASGDQTIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      ..+++.+.||+|++-|++....-  ..+..-...+..+.|+.+. ..++.+..=|.+.+||++......           
T Consensus       248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~-----------  315 (498)
T KOG4328|consen  248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEY-----------  315 (498)
T ss_pred             hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccc-----------
Confidence            78999999999999999887443  3333344566778888877 556666666799999999765422           


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                     ..+..|...|.+++++|...+++++++.|++.+|||++.......       +......|...|.
T Consensus       316 ---------------~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-------p~lst~~HrrsV~  373 (498)
T KOG4328|consen  316 ---------------ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-------PFLSTLPHRRSVN  373 (498)
T ss_pred             ---------------hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-------cceecccccceee
Confidence                           134466779999999999999888888999999999997654432       1114677888999


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEccc--CCCCceEeee-eceec--eeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQ--LDKGPIQHFS-GCRIE--SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~-~~~~~--~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      +..|+|.+-.|++.+.|..|+|||..-  ....+...+. .+...  -......|.|+..+|++|-.-..|-|+|-..++
T Consensus       374 sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  374 SAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             eeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence            999999888899999999999999741  1112222222 11111  123457899999999999999999999988776


Q ss_pred             CCCceeccccCCeEE-EEeCCCCCC-eEEEEeCCCcEEEEeCCC
Q 010390          354 ADPIKLKSHDGEVTA-VNWCPNEAG-KIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       354 ~~~~~~~~h~~~v~~-v~~~~~~~~-~l~s~~~dg~i~vwd~~~  395 (512)
                      ............|.+ ..|+|.+ . +++.++..|.|+||.-+.
T Consensus       454 ~v~el~~P~~~tI~~vn~~HP~~-~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  454 MVCELHDPESSTIPSVNEFHPMR-DTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             EeeeccCccccccccceeecccc-cceeccCCccceEEEEecCC
Confidence            432222222334544 4699988 5 444445678999886543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.3e-23  Score=186.09  Aligned_cols=298  Identities=15%  Similarity=0.281  Sum_probs=213.7

Q ss_pred             EEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC-CCcEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 010390           59 CKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-QNAIFDLCWIKEDTNILTASGDQTIKIWDA  137 (512)
Q Consensus        59 ~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~  137 (512)
                      +.|+|.+.-|...+..|.+..|+.+++..          .+....+..+ +.-|.|++|.++|+ +++|..+|.|.||+.
T Consensus       206 a~FHPtd~nliit~Gk~H~~Fw~~~~~~l----------~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~  274 (626)
T KOG2106|consen  206 ATFHPTDPNLIITCGKGHLYFWTLRGGSL----------VKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSK  274 (626)
T ss_pred             EEeccCCCcEEEEeCCceEEEEEccCCce----------EEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeC
Confidence            34488665444445578999999887643          1222333333 36899999999886 789999999999999


Q ss_pred             CCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccc--ceeeecccccccccc--------
Q 010390          138 EKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAE--SFVFSSAVVKGAHLL--------  207 (512)
Q Consensus       138 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--------  207 (512)
                      .+.+..+....|.+.|.+++...+|  .|++|+.|+.|..||-.-.........+  ..+.......+..+.        
T Consensus       275 ~~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL  352 (626)
T KOG2106|consen  275 GTNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL  352 (626)
T ss_pred             CCceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence            8888777777999999999999876  5667999999999993322211111111  111111111111000        


Q ss_pred             ---cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390          208 ---SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS  284 (512)
Q Consensus       208 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (512)
                         ..........+|......++.+|+..+++++| .|+.+++|+  ..+....            .....++.|+.|+|
T Consensus       353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g-qdk~v~lW~--~~k~~wt------------~~~~d~~~~~~fhp  417 (626)
T KOG2106|consen  353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG-QDKHVRLWN--DHKLEWT------------KIIEDPAECADFHP  417 (626)
T ss_pred             EeeecCCceEEEEecccceeeEEcCCChhheeecc-CcceEEEcc--CCceeEE------------EEecCceeEeeccC
Confidence               01112234567888999999999999999977 899999999  3333332            22235688999999


Q ss_pred             CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee-cccc
Q 010390          285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL-KSHD  363 (512)
Q Consensus       285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~-~~h~  363 (512)
                      .| .++.|...|...+.|.++.   .+..+.  .....+..+.|+|+|.+||.|+.|+.|+||.+.......... ..|.
T Consensus       418 sg-~va~Gt~~G~w~V~d~e~~---~lv~~~--~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g  491 (626)
T KOG2106|consen  418 SG-VVAVGTATGRWFVLDTETQ---DLVTIH--TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG  491 (626)
T ss_pred             cc-eEEEeeccceEEEEecccc---eeEEEE--ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence            99 9999999999999998652   222222  225668889999999999999999999999998665433333 3345


Q ss_pred             CCeEEEEeCCCCCCeEEEEeCCCcEEEE
Q 010390          364 GEVTAVNWCPNEAGKIVTSSDDYTVRLW  391 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vw  391 (512)
                      .+|+.+.|++|+ ++|.+-+.|-.|..|
T Consensus       492 s~ithLDwS~Ds-~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  492 SPITHLDWSSDS-QFLVSNSGDYEILYW  518 (626)
T ss_pred             ceeEEeeecCCC-ceEEeccCceEEEEE
Confidence            799999999999 899999999999999

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.1e-24  Score=196.81  Aligned_cols=288  Identities=18%  Similarity=0.207  Sum_probs=217.8

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .+...++||++.|.+|+.   .|.|.+||+|+.||+|+||.+.++.+             +.++. -.+.|.|++|+|.+
T Consensus       391 ~~~lvyrGHtg~Vr~iSv---dp~G~wlasGsdDGtvriWEi~TgRc-------------vr~~~-~d~~I~~vaw~P~~  453 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISV---DPSGEWLASGSDDGTVRIWEIATGRC-------------VRTVQ-FDSEIRSVAWNPLS  453 (733)
T ss_pred             eeeeeEeccCCeEEEEEe---cCCcceeeecCCCCcEEEEEeecceE-------------EEEEe-ecceeEEEEecCCC
Confidence            345678899999999999   99999999999999999999998854             44433 34689999999965


Q ss_pred             C--EEEEEeCCCcEEEEeCCCCe-------------------------------------eeecccCcCCCEEEEEeeCC
Q 010390          121 T--NILTASGDQTIKIWDAEKKK-------------------------------------CTGALMGHTGSIKSLCSHPT  161 (512)
Q Consensus       121 ~--~l~s~~~dg~i~iwd~~~~~-------------------------------------~~~~~~~h~~~v~~l~~~~~  161 (512)
                      .  .||++-. ..+.|-+..-|.                                     -++....|...|..+.|+..
T Consensus       454 ~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk  532 (733)
T KOG0650|consen  454 DLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK  532 (733)
T ss_pred             CceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence            4  3444433 334444432110                                     01222347789999999999


Q ss_pred             CCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE
Q 010390          162 NSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA  238 (512)
Q Consensus       162 ~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  238 (512)
                      | .+|++...+   ..|.|.++.......                           .+....+.+.++.|+|...+++++
T Consensus       533 G-DYlatV~~~~~~~~VliHQLSK~~sQ~---------------------------PF~kskG~vq~v~FHPs~p~lfVa  584 (733)
T KOG0650|consen  533 G-DYLATVMPDSGNKSVLIHQLSKRKSQS---------------------------PFRKSKGLVQRVKFHPSKPYLFVA  584 (733)
T ss_pred             C-ceEEEeccCCCcceEEEEecccccccC---------------------------chhhcCCceeEEEecCCCceEEEE
Confidence            8 888888764   468888887543322                           344456789999999999999986


Q ss_pred             eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece
Q 010390          239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR  318 (512)
Q Consensus       239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  318 (512)
                      .  ...|++||+.....+.           .+......|..|+.+|.|..|+.++.|+.+..||+.- ..++.+.+..|.
T Consensus       585 T--q~~vRiYdL~kqelvK-----------kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl-sskPyk~lr~H~  650 (733)
T KOG0650|consen  585 T--QRSVRIYDLSKQELVK-----------KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL-SSKPYKTLRLHE  650 (733)
T ss_pred             e--ccceEEEehhHHHHHH-----------HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc-CcchhHHhhhhh
Confidence            5  7889999999865544           2444456799999999999999999999999999843 344555555553


Q ss_pred             eceeEEEEEECCCCCEEEEecCCCCEEEEecCCC--------CCCCceeccccCC----eEEEEeCCCCCCeEEEEeCCC
Q 010390          319 IESFYVKSEICPNASHILSGSSDGNAYVWQVNKP--------QADPIKLKSHDGE----VTAVNWCPNEAGKIVTSSDDY  386 (512)
Q Consensus       319 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~--------~~~~~~~~~h~~~----v~~v~~~~~~~~~l~s~~~dg  386 (512)
                        ..+..++|++.-.++++|+.||++.||.-.-.        -.++..+.+|...    |..+.|+|.. -+|++++.||
T Consensus       651 --~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~  727 (733)
T KOG0650|consen  651 --KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADG  727 (733)
T ss_pred             --hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC-ceEEecCCCc
Confidence              44677999999999999999999999853211        1234567888654    9999999998 6999999999


Q ss_pred             cEEEE
Q 010390          387 TVRLW  391 (512)
Q Consensus       387 ~i~vw  391 (512)
                      +|++|
T Consensus       728 tirlf  732 (733)
T KOG0650|consen  728 TIRLF  732 (733)
T ss_pred             eEEee
Confidence            99998

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.1e-23  Score=186.58  Aligned_cols=277  Identities=20%  Similarity=0.372  Sum_probs=209.0

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      ..|.||+|   .+||+ ++||.++|.|.||+..+.+.             .++...|.+.|.+++...+|. |++|+.|.
T Consensus       247 k~Vl~v~F---~engd-viTgDS~G~i~Iw~~~~~~~-------------~k~~~aH~ggv~~L~~lr~Gt-llSGgKDR  308 (626)
T KOG2106|consen  247 KFVLCVTF---LENGD-VITGDSGGNILIWSKGTNRI-------------SKQVHAHDGGVFSLCMLRDGT-LLSGGKDR  308 (626)
T ss_pred             eEEEEEEE---cCCCC-EEeecCCceEEEEeCCCceE-------------EeEeeecCCceEEEEEecCcc-EeecCccc
Confidence            55777777   89887 77899999999999865532             344459999999999998886 55599999


Q ss_pred             cEEEEeCCCCe----------------------------------------eeecccCcCCCEEEEEeeCCCCCeEEEEe
Q 010390          131 TIKIWDAEKKK----------------------------------------CTGALMGHTGSIKSLCSHPTNSDILVSGS  170 (512)
Q Consensus       131 ~i~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  170 (512)
                      .|..||-.-.+                                        ......+|.+..+.++.+|+. +++++++
T Consensus       309 ki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~g  387 (626)
T KOG2106|consen  309 KIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCG  387 (626)
T ss_pred             eEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeecc
Confidence            99999832110                                        001224588899999999987 8999999


Q ss_pred             CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390          171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDT  250 (512)
Q Consensus       171 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~  250 (512)
                      .|+.+++|+  ..+..                            ..+....+..|+.|+|.| .++ .|...|...+.|.
T Consensus       388 qdk~v~lW~--~~k~~----------------------------wt~~~~d~~~~~~fhpsg-~va-~Gt~~G~w~V~d~  435 (626)
T KOG2106|consen  388 QDKHVRLWN--DHKLE----------------------------WTKIIEDPAECADFHPSG-VVA-VGTATGRWFVLDT  435 (626)
T ss_pred             CcceEEEcc--CCcee----------------------------EEEEecCceeEeeccCcc-eEE-EeeccceEEEEec
Confidence            999999999  22111                            112335588999999999 454 4878999999999


Q ss_pred             cCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC
Q 010390          251 RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP  330 (512)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  330 (512)
                      ++...+.            ......++++++|+|+|.+||+|+.|+.|++|-+..... .......... .+++.+.||+
T Consensus       436 e~~~lv~------------~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~g-s~ithLDwS~  501 (626)
T KOG2106|consen  436 ETQDLVT------------IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSG-SPITHLDWSS  501 (626)
T ss_pred             ccceeEE------------EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc-EEEEeeeecC-ceeEEeeecC
Confidence            9855443            222267899999999999999999999999999866433 2333333333 7889999999


Q ss_pred             CCCEEEEecCCCCEEEEecCC-----------------------------------------------------------
Q 010390          331 NASHILSGSSDGNAYVWQVNK-----------------------------------------------------------  351 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~-----------------------------------------------------------  351 (512)
                      |+++|.+-+.|-.|..|.-..                                                           
T Consensus       502 Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP  581 (626)
T KOG2106|consen  502 DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP  581 (626)
T ss_pred             CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence            999888888888888883221                                                           


Q ss_pred             ---CCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          352 ---PQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       352 ---~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                         .+.....+.+|.+.|++++|.-+. ..|++.+.|..|..|++
T Consensus       582 c~s~rA~~he~~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  582 CSSPRAPSHEYGGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             cCCCcccceeeccccceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence               111122456788899999999887 78888889999999986

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=4.2e-25  Score=195.34  Aligned_cols=274  Identities=16%  Similarity=0.254  Sum_probs=215.4

Q ss_pred             ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---eeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK---KCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      ..|.+-|.++..+...+++.||+. |.|+|||+...   .++..+.  .....|.+....|++ +.|++|+.-.+|.|||
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastlsiWD  493 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWD  493 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-ceEEeccccceeeeee
Confidence            468899999999999999999975 66999999654   2333332  234678899999998 8899999999999999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~  259 (512)
                      +.........                         .+........+++.+||.+..++++ .||.|.|||+.+...+.  
T Consensus       494 LAapTprika-------------------------eltssapaCyALa~spDakvcFscc-sdGnI~vwDLhnq~~Vr--  545 (705)
T KOG0639|consen  494 LAAPTPRIKA-------------------------ELTSSAPACYALAISPDAKVCFSCC-SDGNIAVWDLHNQTLVR--  545 (705)
T ss_pred             ccCCCcchhh-------------------------hcCCcchhhhhhhcCCccceeeeec-cCCcEEEEEcccceeee--
Confidence            9865432211                         1112223567788999999888866 69999999999887766  


Q ss_pred             cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS  339 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  339 (512)
                               .+.+|..++.|+.+++||..|.+|+-|++|+.||++....     +..|...+.|.++.++|++.+|+.|-
T Consensus       546 ---------qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-----lqqhdF~SQIfSLg~cP~~dWlavGM  611 (705)
T KOG0639|consen  546 ---------QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-----LQQHDFSSQIFSLGYCPTGDWLAVGM  611 (705)
T ss_pred             ---------cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-----hhhhhhhhhheecccCCCccceeeec
Confidence                     6899999999999999999999999999999999977543     33344456688899999999999999


Q ss_pred             CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchh
Q 010390          340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTEC  419 (512)
Q Consensus       340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (512)
                      .++.+.|......+.  ..+..|+..|.++.|.+.| +++++.+.|+.+..|...-|..+..   ......|.++..+..
T Consensus       612 ens~vevlh~skp~k--yqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGasiFq---skE~SsVlsCDIS~d  685 (705)
T KOG0639|consen  612 ENSNVEVLHTSKPEK--YQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQ---SKESSSVLSCDISFD  685 (705)
T ss_pred             ccCcEEEEecCCccc--eeecccccEEEEEEecccC-ceeeecCchhhhhhccCccccceee---ccccCcceeeeeccC
Confidence            999999888776554  5788899999999999999 9999999999999999988875543   222334555555555


Q ss_pred             cccccCCCC
Q 010390          420 RKLFMNGEP  428 (512)
Q Consensus       420 ~~~~~~~~~  428 (512)
                      .+++++|.+
T Consensus       686 dkyIVTGSG  694 (705)
T KOG0639|consen  686 DKYIVTGSG  694 (705)
T ss_pred             ceEEEecCC
Confidence            555555544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.4e-25  Score=206.83  Aligned_cols=250  Identities=17%  Similarity=0.280  Sum_probs=195.2

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCc
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQT  131 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~  131 (512)
                      +..|.|.  .-+.++|||++..|.|.+||+...          ...+.+..|..|+..|+++.|++ ...+|++|+.||+
T Consensus        90 ~~DVkW~--~~~~NlIAT~s~nG~i~vWdlnk~----------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~  157 (839)
T KOG0269|consen   90 AADVKWG--QLYSNLIATCSTNGVISVWDLNKS----------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGT  157 (839)
T ss_pred             hhhcccc--cchhhhheeecCCCcEEEEecCcc----------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCce
Confidence            3455554  235689999999999999999763          12345778899999999999999 4567789999999


Q ss_pred             EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390          132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK  211 (512)
Q Consensus       132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (512)
                      |++||++..+...++.+....|..+.|+|..++.|+++...|.|++||++...                          +
T Consensus       158 vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~--------------------------r  211 (839)
T KOG0269|consen  158 VKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD--------------------------R  211 (839)
T ss_pred             EEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch--------------------------h
Confidence            99999999999999999899999999999888999999999999999999643                          3


Q ss_pred             cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE-EE
Q 010390          212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF-LT  290 (512)
Q Consensus       212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~  290 (512)
                      ....+.+|.++|.|+.|+|++.+|++ |+.|+.|+|||..+.+....          .......++.++.|-|...+ |+
T Consensus       212 ~~~k~~AH~GpV~c~nwhPnr~~lAT-GGRDK~vkiWd~t~~~~~~~----------~tInTiapv~rVkWRP~~~~hLA  280 (839)
T KOG0269|consen  212 CEKKLTAHNGPVLCLNWHPNREWLAT-GGRDKMVKIWDMTDSRAKPK----------HTINTIAPVGRVKWRPARSYHLA  280 (839)
T ss_pred             HHHHhhcccCceEEEeecCCCceeee-cCCCccEEEEeccCCCccce----------eEEeecceeeeeeeccCccchhh
Confidence            34467799999999999998888887 55999999999987554322          12233467999999997764 55


Q ss_pred             EEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEEEecCCCCEEEEecCCCCC
Q 010390          291 ASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       291 ~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      +++  .|-.|+|||++.. -.+...+..|.  ..++.++|.. |...+.+++.||+|..-.+++...
T Consensus       281 tcsmv~dtsV~VWDvrRP-YIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~  344 (839)
T KOG0269|consen  281 TCSMVVDTSVHVWDVRRP-YIPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT  344 (839)
T ss_pred             hhhccccceEEEEeeccc-cccceeeeccC--ccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence            554  5678999999753 33455555553  4466688865 455678899999887776665544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.7e-24  Score=200.05  Aligned_cols=263  Identities=14%  Similarity=0.218  Sum_probs=206.3

Q ss_pred             ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      .+|...-+.|+|.|+|.+|++++.||.|++|+.... +...++..+...|.+++...   +.|++|+.+++|.+|.+.++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCCC
Confidence            478899999999999999999999999999997766 44555554777888887653   68999999999999999876


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      +.-..                           +....-++++++++-+|+.+++ |+.|-.|++.+........      
T Consensus        87 ~~~~i---------------------------L~Rftlp~r~~~v~g~g~~iaa-gsdD~~vK~~~~~D~s~~~------  132 (933)
T KOG1274|consen   87 EEDTI---------------------------LARFTLPIRDLAVSGSGKMIAA-GSDDTAVKLLNLDDSSQEK------  132 (933)
T ss_pred             Cccce---------------------------eeeeeccceEEEEecCCcEEEe-ecCceeEEEEeccccchhe------
Confidence            54321                           1123448999999999999987 5589999999998877665      


Q ss_pred             ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee------ceeceeEEEEEECCCCCEEEE
Q 010390          264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG------CRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~  337 (512)
                           ...+|..+|.++.++|++.+|++.+.||.|++||+.+....  ..+.+      ......+..++|+|++..+++
T Consensus       133 -----~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~--~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~  205 (933)
T KOG1274|consen  133 -----VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS--KTLTGVDKDNEFILSRICTRLAWHPKGGTLAV  205 (933)
T ss_pred             -----eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh--hhcccCCccccccccceeeeeeecCCCCeEEe
Confidence                 57899999999999999999999999999999999764322  22111      112455778999999888888


Q ss_pred             ecCCCCEEEEecCCCCCCCceec-cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeecc
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLK-SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPS  416 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  416 (512)
                      ...|+.|.+|+..+......... .+...+..++|+|.| .|||+++.||.|.|||.++-+.      ......|++..+
T Consensus       206 ~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw  278 (933)
T KOG1274|consen  206 PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAW  278 (933)
T ss_pred             eccCCeEEEEccCCceeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccchh------ccccceeEEEec
Confidence            88899999999988766432222 334459999999999 9999999999999999997221      333445555555


Q ss_pred             ch
Q 010390          417 TE  418 (512)
Q Consensus       417 ~~  418 (512)
                      .+
T Consensus       279 ~p  280 (933)
T KOG1274|consen  279 KP  280 (933)
T ss_pred             CC
Confidence            54

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=1e-23  Score=176.62  Aligned_cols=299  Identities=17%  Similarity=0.209  Sum_probs=212.8

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccc-cccccccccceeccccCCCcEEEEEEe-------cCCCEE
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFA-CHRENAEKARISDWVAHQNAIFDLCWI-------KEDTNI  123 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~l~~s-------~~~~~l  123 (512)
                      |-+-+.=|.|||||..|.+-+.|..+.+|++........ ....+.+.+..... .....|+..+|-       |+..++
T Consensus        48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~  126 (406)
T KOG2919|consen   48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLF  126 (406)
T ss_pred             chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCcccee
Confidence            334444456699999999999999999999754322111 00000111111111 224678888887       567789


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecccC--cCC---CEEEEEeeCCCCCeEEEEeCCCcEEEEeCC-CCCCCCCccccceeee
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALMG--HTG---SIKSLCSHPTNSDILVSGSRDGSFAIWDLR-CKSSPKSNCAESFVFS  197 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~~--h~~---~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~  197 (512)
                      ++.+.+.-|++||.-+|+....+.+  |..   ...+++|+|+| ..|++|. ...|+++|+. .+..-.....      
T Consensus       127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaGy-krcirvFdt~RpGr~c~vy~t------  198 (406)
T KOG2919|consen  127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAGY-KRCIRVFDTSRPGRDCPVYTT------  198 (406)
T ss_pred             eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeecc-cceEEEeeccCCCCCCcchhh------
Confidence            9999999999999999998877754  333   45689999999 6777765 5799999994 3322111000      


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                    ...-..+..+.+.+++|+|.....+++|+....+-||.-.......           .+.+|.++|
T Consensus       199 --------------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~-----------llggh~gGv  253 (406)
T KOG2919|consen  199 --------------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ-----------LLGGHGGGV  253 (406)
T ss_pred             --------------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee-----------eecccCCCe
Confidence                          0001223456789999999888666668788888888777666554           467899999


Q ss_pred             eEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeecee-ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC
Q 010390          278 SSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCRI-ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD  355 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~  355 (512)
                      +.+.|.++|+.|++|. .|-.|..||++.. ..++..+..+.. ...-+-....|++++|++|+.||.|++||+.+....
T Consensus       254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~-~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~  332 (406)
T KOG2919|consen  254 THLQWCEDGNKLFSGARKDDKILCWDIRYS-RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE  332 (406)
T ss_pred             eeEEeccCcCeecccccCCCeEEEEeehhc-cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence            9999999999999998 4679999999874 344555555443 333334667799999999999999999999985555


Q ss_pred             CceeccccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390          356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY  386 (512)
Q Consensus       356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg  386 (512)
                      ...+..|...|+.++++|-- .++++++...
T Consensus       333 ~sv~~~~sd~vNgvslnP~m-pilatssGqr  362 (406)
T KOG2919|consen  333 VSVTGNYSDTVNGVSLNPIM-PILATSSGQR  362 (406)
T ss_pred             ccccccccccccceecCccc-ceeeeccCce
Confidence            66788899999999999986 5777776543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.2e-24  Score=184.14  Aligned_cols=336  Identities=14%  Similarity=0.153  Sum_probs=237.8

Q ss_pred             ccceeeecCcccccccccCCCCCCceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccc
Q 010390           12 NVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFAC   91 (512)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~   91 (512)
                      .+..++++|...-...|...    +..-......+.+|.+-|++|.|   |.++++||+|+.|-.++||+++......  
T Consensus        22 FL~QR~i~~~~~~~k~F~~~----~~~R~~~qKD~~~H~GCiNAlqF---S~N~~~L~SGGDD~~~~~W~~de~~~~k--   92 (609)
T KOG4227|consen   22 FLCQREIGSVKSVVKTFRPD----FQHRPFCQKDVREHTGCINALQF---SHNDRFLASGGDDMHGRVWNVDELMVRK--   92 (609)
T ss_pred             eeeecccCCChhhhhhhchh----hhhcchhhhhhhhhccccceeee---ccCCeEEeecCCcceeeeechHHHHhhc--
Confidence            45666677655422222111    22223445678899999999999   9999999999999999999986432100  


Q ss_pred             ccccccccceecc-ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccC--cCCCEEEEEeeCCCCCeEEE
Q 010390           92 HRENAEKARISDW-VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMG--HTGSIKSLCSHPTNSDILVS  168 (512)
Q Consensus        92 ~~~~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s  168 (512)
                           ..+++... ..|...|.|++|.-....|.+|+.+++|..-|+++.+.+..+..  ..+.|+.+..+|.+ +.|++
T Consensus        93 -----~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~  166 (609)
T KOG4227|consen   93 -----TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIV  166 (609)
T ss_pred             -----CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEE
Confidence                 01222222 34568999999999899999999999999999999988877652  23589999999997 99999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEE
Q 010390          169 GSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW  248 (512)
Q Consensus       169 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw  248 (512)
                      .+.++.|.+||.+.........                        ...........+.|+|....|+++.+..+.+.+|
T Consensus       167 ~t~~~~V~~~D~Rd~~~~~~~~------------------------~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~  222 (609)
T KOG4227|consen  167 VTRAKLVSFIDNRDRQNPISLV------------------------LPANSGKNFYTAEFHPETPALILVNSETGGPNVF  222 (609)
T ss_pred             EecCceEEEEeccCCCCCCcee------------------------eecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence            9999999999998665222110                        1112234678899999998888878788999999


Q ss_pred             eccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee----eceeceeEE
Q 010390          249 DTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS----GCRIESFYV  324 (512)
Q Consensus       249 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~~~  324 (512)
                      |++.............    .+......-..+.|+|+|..|++--....-.+||+-.. ..++..+.    +.-....+.
T Consensus       223 D~R~~~~~~~~~~~~~----~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~-R~~V~k~D~N~~GY~N~~T~K  297 (609)
T KOG4227|consen  223 DRRMQARPVYQRSMFK----GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ-RCFVLKSDHNPNGYCNIKTIK  297 (609)
T ss_pred             eeccccchHHhhhccc----cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc-cceeEeccCCCCcceeeeeee
Confidence            9998765443322211    12222233467889999999988877767777887542 12222222    111223455


Q ss_pred             EEEECCCCCEEEEecCCCCEEEEecCCCC----------------------CCCceeccccCCeEEEEeCCCCCCeEEEE
Q 010390          325 KSEICPNASHILSGSSDGNAYVWQVNKPQ----------------------ADPIKLKSHDGEVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       325 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~----------------------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~  382 (512)
                      +++|-.|.. +++|+.+-.|++|.+....                      .....+.+|...++.|.|+|.. ++|++.
T Consensus       298 S~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~-~~l~SS  375 (609)
T KOG4227|consen  298 SMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN-NLLVSS  375 (609)
T ss_pred             eeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc-ceEecc
Confidence            677765544 9999999999999875311                      1124678999999999999998 899999


Q ss_pred             eCCCcEEEEeC
Q 010390          383 SDDYTVRLWSL  393 (512)
Q Consensus       383 ~~dg~i~vwd~  393 (512)
                      +..+.+++|.-
T Consensus       376 GVE~~~KlWS~  386 (609)
T KOG4227|consen  376 GVENSFKLWSD  386 (609)
T ss_pred             chhhheecccc
Confidence            99999999964

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=9.5e-24  Score=174.61  Aligned_cols=258  Identities=16%  Similarity=0.182  Sum_probs=189.7

Q ss_pred             ccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCe------------ee---ecccCcCCCEEEEEeeCCCCCeEEE
Q 010390          105 VAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKKK------------CT---GALMGHTGSIKSLCSHPTNSDILVS  168 (512)
Q Consensus       105 ~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~------------~~---~~~~~h~~~v~~l~~~~~~~~~l~s  168 (512)
                      ..|.+.|+++...+ .|+++++|+.||.|.+||+++..            ++   ..-.+|.-.|.++.|.|.+.-+|.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46889999999988 78999999999999999997642            11   1114588899999999988789999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEE
Q 010390          169 GSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVK  246 (512)
Q Consensus       169 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~  246 (512)
                      ++.|.++++||.++.+....+                            ..++.|.+-+++|-  ...|+++|..+-.|+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F----------------------------~me~~VYshamSp~a~sHcLiA~gtr~~~Vr  171 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDF----------------------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVR  171 (397)
T ss_pred             ccccceEEEeecccceeeEEe----------------------------ecCceeehhhcChhhhcceEEEEecCCCcEE
Confidence            999999999999987654433                            23456777788773  356778898999999


Q ss_pred             EEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCceEeee----------
Q 010390          247 FWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFS----------  315 (512)
Q Consensus       247 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------  315 (512)
                      +.|+.++....           .+.+|...|.++.|+|... .|++|+.||.|++||++... ..+..+.          
T Consensus       172 LCDi~SGs~sH-----------~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-gcf~~lD~hn~k~~p~~  239 (397)
T KOG4283|consen  172 LCDIASGSFSH-----------TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-GCFRVLDQHNTKRPPIL  239 (397)
T ss_pred             EEeccCCccee-----------eeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc-ceeEEeecccCccCccc
Confidence            99999998766           5899999999999999776 57789999999999997642 2222222          


Q ss_pred             --eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec--cccC----CeEEEEeCCCCCCeEEEEeCCCc
Q 010390          316 --GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK--SHDG----EVTAVNWCPNEAGKIVTSSDDYT  387 (512)
Q Consensus       316 --~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~--~h~~----~v~~v~~~~~~~~~l~s~~~dg~  387 (512)
                        ...+.+.+..++|+.++.++++.+.|..+++|+..+++.....+.  .|..    .+. +. +-+. ..++---.|+.
T Consensus       240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s-~vfv~~p~~~~  316 (397)
T KOG4283|consen  240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDS-DVFVLFPNDGS  316 (397)
T ss_pred             cccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-eccc-ceEEEEecCCe
Confidence              222345678899999999999999999999999988765332221  1211    111 22 2222 33444444566


Q ss_pred             EEEEeCCCCcccccccCc
Q 010390          388 VRLWSLENSRCSSMRSPS  405 (512)
Q Consensus       388 i~vwd~~~~~~~~~~~~~  405 (512)
                      +.++++-.++.++.+...
T Consensus       317 lall~~~sgs~ir~l~~h  334 (397)
T KOG4283|consen  317 LALLNLLEGSFVRRLSTH  334 (397)
T ss_pred             EEEEEccCceEEEeeecc
Confidence            777777777666654433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=3.3e-24  Score=196.97  Aligned_cols=277  Identities=18%  Similarity=0.326  Sum_probs=219.0

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee--ecccCcCCCEEE-EEeeCCCCCeEEEEeCCCcE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT--GALMGHTGSIKS-LCSHPTNSDILVSGSRDGSF  175 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i  175 (512)
                      +..+.+.+|+..|..++.. ++..+++++.||++++|+-..++.+  ..+.+|.+.|.. +++.+.+...+++|+.|.++
T Consensus         5 ~ls~~l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eeEEEeccCccchheeEec-CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            3466788999999999976 4558999999999999997666543  456778888877 88887444679999999999


Q ss_pred             EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390          176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA  255 (512)
Q Consensus       176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~  255 (512)
                      .+|.+.+.....                           .+.+|...|.++....++. ++ +|+.|.++++|.......
T Consensus        84 ~v~~~~~~~P~~---------------------------~LkgH~snVC~ls~~~~~~-~i-SgSWD~TakvW~~~~l~~  134 (745)
T KOG0301|consen   84 IVFKLSQAEPLY---------------------------TLKGHKSNVCSLSIGEDGT-LI-SGSWDSTAKVWRIGELVY  134 (745)
T ss_pred             EEEecCCCCchh---------------------------hhhccccceeeeecCCcCc-eE-ecccccceEEecchhhhc
Confidence            999988665443                           6778999999999887777 44 588999999998765443


Q ss_pred             eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE
Q 010390          256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI  335 (512)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  335 (512)
                                   ...+|...|.++..-|.+ .+++|+.|.+|++|.-    ...+..+.+|  ...+..+++-+++ .+
T Consensus       135 -------------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~----~~~l~tf~gH--tD~VRgL~vl~~~-~f  193 (745)
T KOG0301|consen  135 -------------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG----GTLLKTFSGH--TDCVRGLAVLDDS-HF  193 (745)
T ss_pred             -------------ccCCcchheeeeeecCCC-cEEeccCcceeeeccC----Cchhhhhccc--hhheeeeEEecCC-Ce
Confidence                         478899999999999988 7899999999999984    4566777776  4567778887664 46


Q ss_pred             EEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeec
Q 010390          336 LSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIP  415 (512)
Q Consensus       336 ~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  415 (512)
                      +++++||.|++|++. +.. +..+.+|+.-|+++....++ ..++++|+|++++||+..  +|.+....  +...+|+..
T Consensus       194 lScsNDg~Ir~w~~~-ge~-l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~--e~~q~I~l--PttsiWsa~  266 (745)
T KOG0301|consen  194 LSCSNDGSIRLWDLD-GEV-LLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD--ECVQVITL--PTTSIWSAK  266 (745)
T ss_pred             EeecCCceEEEEecc-Cce-eeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC--ceEEEEec--CccceEEEE
Confidence            788899999999994 444 57889999999999966666 799999999999999987  66665432  345677766


Q ss_pred             cchhcccccCCCCccccc
Q 010390          416 STECRKLFMNGEPGWLAK  433 (512)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~  433 (512)
                      .-+.+.++..++++.+.+
T Consensus       267 ~L~NgDIvvg~SDG~VrV  284 (745)
T KOG0301|consen  267 VLLNGDIVVGGSDGRVRV  284 (745)
T ss_pred             EeeCCCEEEeccCceEEE
Confidence            666667776666665443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.3e-23  Score=188.74  Aligned_cols=291  Identities=14%  Similarity=0.210  Sum_probs=222.0

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC-CCcEEEEEEecCCCEEEEEeC
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-QNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      +.+|.+++|   +.+.+.||++-.+|.|-||++...-.            +...+.++ ...|.+++|+ ++..|.+.+.
T Consensus        25 Ps~I~slA~---s~kS~~lAvsRt~g~IEiwN~~~~w~------------~~~vi~g~~drsIE~L~W~-e~~RLFS~g~   88 (691)
T KOG2048|consen   25 PSEIVSLAY---SHKSNQLAVSRTDGNIEIWNLSNNWF------------LEPVIHGPEDRSIESLAWA-EGGRLFSSGL   88 (691)
T ss_pred             ccceEEEEE---eccCCceeeeccCCcEEEEccCCCce------------eeEEEecCCCCceeeEEEc-cCCeEEeecC
Confidence            456788888   88888899999999999999876422            23334444 5689999999 5667888899


Q ss_pred             CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      +|.|.-||+.+++....+....+.|++++.+|.+ ..++.|+.||.+..++...+.....                    
T Consensus        89 sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~--------------------  147 (691)
T KOG2048|consen   89 SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYK--------------------  147 (691)
T ss_pred             CceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEE--------------------
Confidence            9999999999999999999999999999999988 8999999999877777765543221                    


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc-cccCeeEEEeCCCCC
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET-RLHGISSLSQDSNGV  287 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~  287 (512)
                           ..+....+.+.++.|+|++..++. |+.||.|++||..++.........-.    .... ...-|.++.+-.++ 
T Consensus       148 -----r~l~rq~sRvLslsw~~~~~~i~~-Gs~Dg~Iriwd~~~~~t~~~~~~~~d----~l~k~~~~iVWSv~~Lrd~-  216 (691)
T KOG2048|consen  148 -----RSLMRQKSRVLSLSWNPTGTKIAG-GSIDGVIRIWDVKSGQTLHIITMQLD----RLSKREPTIVWSVLFLRDS-  216 (691)
T ss_pred             -----eecccccceEEEEEecCCccEEEe-cccCceEEEEEcCCCceEEEeeeccc----ccccCCceEEEEEEEeecC-
Confidence                 122233578999999999998887 77899999999998887652110000    1111 23347788877554 


Q ss_pred             EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC---CCceeccccC
Q 010390          288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA---DPIKLKSHDG  364 (512)
Q Consensus       288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~---~~~~~~~h~~  364 (512)
                      .|++|..-|+|.+||-..+  ..+..+..+  ...+.+++..++++++++++.|+.|..|...+...   .......|..
T Consensus       217 tI~sgDS~G~V~FWd~~~g--TLiqS~~~h--~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h  292 (691)
T KOG2048|consen  217 TIASGDSAGTVTFWDSIFG--TLIQSHSCH--DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH  292 (691)
T ss_pred             cEEEecCCceEEEEcccCc--chhhhhhhh--hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcc
Confidence            6899999999999997553  233333333  24578899999999999999999999998876643   1223456788


Q ss_pred             CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          365 EVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       365 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      .|.+++..+   ..+++|+.|..+.+-....
T Consensus       293 dvrs~av~~---~~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  293 DVRSMAVIE---NALISGGRDFTLAICSSRE  320 (691)
T ss_pred             cceeeeeec---ceEEecceeeEEEEccccc
Confidence            899999987   4899999999998876655

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=9.4e-24  Score=186.60  Aligned_cols=266  Identities=15%  Similarity=0.265  Sum_probs=205.0

Q ss_pred             cceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390           53 PLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT  131 (512)
Q Consensus        53 v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~  131 (512)
                      ++++.|   +.... .+|+.+.|..|++|.-....++         ...+....+.  .-.|++......++++|+..+.
T Consensus        37 ~~s~~w---~~~n~lvvas~~gdk~~~~~~K~g~~~~---------Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~  102 (673)
T KOG4378|consen   37 DFSFNW---QRRNFLVVASMAGDKVMRIKEKDGKTPE---------VPRVRKLTGD--NAFCVACASQSLYEISGGQSGC  102 (673)
T ss_pred             ceeeec---cccceEEEeecCCceeEEEecccCCCCc---------cceeeccccc--hHHHHhhhhcceeeeccCcCce
Confidence            666666   44443 3334467888999986654321         2223333333  2333333344589999999999


Q ss_pred             EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390          132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK  211 (512)
Q Consensus       132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (512)
                      |+|||++...+.+.+.+|...|+++.++-.+ .+||+++..|.|.+..+.++.....+..                    
T Consensus       103 Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~--------------------  161 (673)
T KOG4378|consen  103 VKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTI--------------------  161 (673)
T ss_pred             eeehhhHHHHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceec--------------------
Confidence            9999999888888899999999999999877 8999999999999999987765443211                    


Q ss_pred             cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-CEEE
Q 010390          212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLT  290 (512)
Q Consensus       212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~  290 (512)
                            .....|.-+.|++..+.++.+.+++|.|.+||+........          -...|..+...++|+|.. .+|+
T Consensus       162 ------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~----------~~~~HsAP~~gicfspsne~l~v  225 (673)
T KOG4378|consen  162 ------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH----------ASEAHSAPCRGICFSPSNEALLV  225 (673)
T ss_pred             ------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc----------hhhhccCCcCcceecCCccceEE
Confidence                  11335678999999999998888999999999998776654          367788889999999954 5778


Q ss_pred             EEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEE
Q 010390          291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVN  370 (512)
Q Consensus       291 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~  370 (512)
                      +.+.|..|.+||++...  ....+.   ...+...++|+++|.+|++|...|.|..||++..+.++.....|+..|++++
T Consensus       226 sVG~Dkki~~yD~~s~~--s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va  300 (673)
T KOG4378|consen  226 SVGYDKKINIYDIRSQA--STDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA  300 (673)
T ss_pred             EecccceEEEeeccccc--ccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence            88999999999987532  222222   1234667999999999999999999999999999988999999999999999


Q ss_pred             eCCC
Q 010390          371 WCPN  374 (512)
Q Consensus       371 ~~~~  374 (512)
                      |-+.
T Consensus       301 fq~s  304 (673)
T KOG4378|consen  301 FQPS  304 (673)
T ss_pred             eeec
Confidence            9775

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.3e-23  Score=173.29  Aligned_cols=296  Identities=15%  Similarity=0.244  Sum_probs=200.5

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee--eccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT--GALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFA  176 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  176 (512)
                      +..+++|.+.|++++|+.||++|++++.|++|+||++.+-...  +.++  -.-+..+.+.|.|+-...++++-...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            5678999999999999999999999999999999999764211  1111  11235678899999877788887778999


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ  256 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~  256 (512)
                      +|.+...+.-...               +..........-..|...+..+-...++.++++++ .|..|.+|+++ ++.+
T Consensus       159 vyk~~K~~dG~~~---------------~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas-~dt~i~lw~lk-Gq~L  221 (420)
T KOG2096|consen  159 VYKLVKKTDGSGS---------------HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS-LDTKICLWDLK-GQLL  221 (420)
T ss_pred             EEEeeecccCCCC---------------cccccccccccchhcccceEEEeecCCceEEEEec-CCCcEEEEecC-Ccee
Confidence            9987543321100               00001111112234555666666666777777654 79999999999 5544


Q ss_pred             ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCC------CceEeeeeceeceeEEEEEECC
Q 010390          257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDK------GPIQHFSGCRIESFYVKSEICP  330 (512)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~s~  330 (512)
                      ..           .......-+..+.+|+|+++++++.--.|++|.+--...      ..+..+.+|.  ..+..++|++
T Consensus       222 ~~-----------idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~--saV~~~aFsn  288 (420)
T KOG2096|consen  222 QS-----------IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ--SAVLAAAFSN  288 (420)
T ss_pred             ee-----------eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch--hheeeeeeCC
Confidence            32           223333456688999999999999999999999743222      2344556664  5688899999


Q ss_pred             CCCEEEEecCCCCEEEEecCCC----CCC--Cc----eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          331 NASHILSGSSDGNAYVWQVNKP----QAD--PI----KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~----~~~--~~----~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      +...+++.+.||+++|||++-.    +.+  +.    .+..-.+.-..+..+|.+ ..|+. +....++++..++|+...
T Consensus       289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~-s~gs~l~~~~se~g~~~~  366 (420)
T KOG2096|consen  289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAV-SFGSDLKVFASEDGKDYP  366 (420)
T ss_pred             CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEe-ecCCceEEEEcccCccch
Confidence            9999999999999999998632    111  11    112223444589999999 55554 445679999999988666


Q ss_pred             cccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390          401 MRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD  452 (512)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  452 (512)
                      +++..                   ++    ..+. .++|+++|++++.....
T Consensus       367 ~~e~~-------------------h~----~~Is-~is~~~~g~~~atcGdr  394 (420)
T KOG2096|consen  367 ELEDI-------------------HS----TTIS-SISYSSDGKYIATCGDR  394 (420)
T ss_pred             hHHHh-------------------hc----Ccee-eEEecCCCcEEeeecce
Confidence            53321                   11    1122 66888888888766433

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=1.6e-22  Score=186.00  Aligned_cols=329  Identities=15%  Similarity=0.196  Sum_probs=235.9

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  124 (512)
                      .+.||++.|+++.|   +|.+..|.+++.|.++.+|.-.+..-.-      .....+...-+......+..|+|++..++
T Consensus       262 ll~GHeDWV~sv~W---~p~~~~LLSASaDksmiiW~pd~~tGiW------v~~vRlGe~gg~a~GF~g~lw~~n~~~ii  332 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWW---HPEGLDLLSASADKSMIIWKPDENTGIW------VDVVRLGEVGGSAGGFWGGLWSPNSNVII  332 (764)
T ss_pred             hhcCcccceEEEEE---ccchhhheecccCcceEEEecCCccceE------EEEEEeecccccccceeeEEEcCCCCEEE
Confidence            45699999999999   9999899999999999999865441100      01112333335566799999999999999


Q ss_pred             EEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC----------------
Q 010390          125 TASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS----------------  185 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----------------  185 (512)
                      +-+.-|-.++|...+.   .....+.+|.+.|..++|.|.| .+|++.+.|.+-|++-.-..+.                
T Consensus       333 ~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~  411 (764)
T KOG1063|consen  333 AHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT  411 (764)
T ss_pred             EecccCcEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccce
Confidence            9999999999983322   3344578999999999999998 8999999999988864331100                


Q ss_pred             -CCCcc-ccceeee------------------------------------c---------------ccccccc----cc-
Q 010390          186 -PKSNC-AESFVFS------------------------------------S---------------AVVKGAH----LL-  207 (512)
Q Consensus       186 -~~~~~-~~~~~~~------------------------------------~---------------~~~~~~~----~~-  207 (512)
                       ..... ...++..                                    +               ....+..    .. 
T Consensus       412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et  491 (764)
T KOG1063|consen  412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET  491 (764)
T ss_pred             eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence             00000 0000000                                    0               0000000    00 


Q ss_pred             -----------c----------ccccceecccccccEEEEEEeecCCEEEEEeec----CCeEEEEeccCccceecccCC
Q 010390          208 -----------S----------QSKRVSRRKAASMSITSVLYLKDEVSIATASAV----NSIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       208 -----------~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~----dg~i~iwd~~~~~~~~~~~~~  262 (512)
                                 +          ......++.+|...|.+++.+|+++.+++++-.    ...|++|+..+.....     
T Consensus       492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-----  566 (764)
T KOG1063|consen  492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-----  566 (764)
T ss_pred             ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-----
Confidence                       0          001123567899999999999999999987632    2369999998876654     


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG  342 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  342 (512)
                            .+..|.-.|+.++|+|||++|++.+.|+++.+|.................+...|..+.|+|++.++++++.|.
T Consensus       567 ------~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK  640 (764)
T KOG1063|consen  567 ------ELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK  640 (764)
T ss_pred             ------eecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc
Confidence                  47888899999999999999999999999999998543332222222334456788999999999999999999


Q ss_pred             CEEEEecCCC--CCCCc-eeccccCCeEEEEeCCCCC----CeEEEEeCCCcEEEEeCC
Q 010390          343 NAYVWQVNKP--QADPI-KLKSHDGEVTAVNWCPNEA----GKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       343 ~i~iw~~~~~--~~~~~-~~~~h~~~v~~v~~~~~~~----~~l~s~~~dg~i~vwd~~  394 (512)
                      +|.+|.....  +.... ....+...|++++|.|-..    ..++.|-..|.|.+|...
T Consensus       641 ~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  641 KVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             eEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            9999998876  32222 3456789999999986421    367788899999999965

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.92  E-value=3e-23  Score=181.71  Aligned_cols=263  Identities=13%  Similarity=0.177  Sum_probs=199.0

Q ss_pred             eeccccCCCcEEEEEEecCC--CEEEEEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390          101 ISDWVAHQNAIFDLCWIKED--TNILTASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS  174 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  174 (512)
                      ....+-|.+.|++++|+|..  +.+++|..-|.|-+||+.+.    .-+..+..|.++|.+|.|+|.+...+++.+.||+
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            44556788999999999943  57789999999999999533    2355677899999999999999899999999999


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      |++-|++........                         ........+.++.|+.+...+++.+ .=|.+.+||+++..
T Consensus       259 iR~~D~~~~i~e~v~-------------------------s~~~d~~~fs~~d~~~e~~~vl~~~-~~G~f~~iD~R~~~  312 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVL-------------------------SLDTDNIWFSSLDFSAESRSVLFGD-NVGNFNVIDLRTDG  312 (498)
T ss_pred             eeeeeecchhhHHHh-------------------------hcCccceeeeeccccCCCccEEEee-cccceEEEEeecCC
Confidence            999999865432211                         1112334677788888887777755 45699999999887


Q ss_pred             ceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390          255 AQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  333 (512)
                      ....          ....|...|..|+++|.. .+|++++.|++.+|||++....+....+....+...|.++.|||.+.
T Consensus       313 s~~~----------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g  382 (498)
T KOG4328|consen  313 SEYE----------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG  382 (498)
T ss_pred             ccch----------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence            6543          356666789999999965 57899999999999999887655432333334445678899999988


Q ss_pred             EEEEecCCCCEEEEecC---CCCCCCceeccccC------CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          334 HILSGSSDGNAYVWQVN---KPQADPIKLKSHDG------EVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       334 ~l~~g~~dg~i~iw~~~---~~~~~~~~~~~h~~------~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      .|++.+.|..|+|||..   ..-++..+ ..|..      ......|.|+. .+++.|-.-..|-|+|-..++++..
T Consensus       383 tl~TT~~D~~IRv~dss~~sa~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  383 TLLTTCQDNEIRVFDSSCISAKDEPLGT-IPHNNRTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             ceEeeccCCceEEeecccccccCCccce-eeccCcccccccchhheeCCCc-cEEEEeccCcceeEEcCCCCEEeee
Confidence            89999999999999984   22222222 22321      24456799988 8999999888999999999886554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.2e-24  Score=209.44  Aligned_cols=295  Identities=20%  Similarity=0.313  Sum_probs=222.8

Q ss_pred             EecCCCc-EEEEee----------CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE----EE
Q 010390           60 KTSKNSH-IFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN----IL  124 (512)
Q Consensus        60 ~~s~~~~-~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~----l~  124 (512)
                      +|+|++. ++|+|.          .+.++-||.+.-.....       +.+.+..+ .-....+.++|.+.+..    |+
T Consensus        13 awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~-------dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIa   84 (1049)
T KOG0307|consen   13 AWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS-------DLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIA   84 (1049)
T ss_pred             EecCCCchhhHHHhhhhccccccccccccceeeecccCccc-------cccccccc-cccccceeeeecccCCCccceee
Confidence            3488886 677653          24456666554322110       01122222 23567899999997766    88


Q ss_pred             EEeCCCcEEEEeCCCC------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          125 TASGDQTIKIWDAEKK------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      .|..||.|.+||...-      ..+.+...|.+.|..+.|++..+++|++|+.||.|.|||+...+......        
T Consensus        85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--------  156 (1049)
T KOG0307|consen   85 GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--------  156 (1049)
T ss_pred             ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--------
Confidence            8999999999997652      34566788999999999999998899999999999999998765443221        


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                       .......|.+++|+..-..++++++.+|.+.|||++..+.+....         .......+.
T Consensus       157 -----------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls---------~~~~~~~~S  210 (1049)
T KOG0307|consen  157 -----------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS---------DTPGRMHCS  210 (1049)
T ss_pred             -----------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc---------cCCCcccee
Confidence                             112356899999999988888889899999999999887665432         112224478


Q ss_pred             EEEeCCCCC-EEEEEecC---CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEecCCCC
Q 010390          279 SLSQDSNGV-FLTASCMD---HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       279 ~~~~~~~~~-~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      .++|+|+.. .|++++.|   -.|.+||++.. ..+++.+.+|.  ..+.++.|++.+ ++|++++.|+.|.+|+.++++
T Consensus       211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-ssP~k~~~~H~--~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE  287 (1049)
T KOG0307|consen  211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-SSPLKILEGHQ--RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE  287 (1049)
T ss_pred             eeeeCCCCceeeeeecCCCCCceeEeeccccc-CCchhhhcccc--cceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence            999999864 56666655   36999999764 45666676665  448889999977 888999999999999999987


Q ss_pred             CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          354 ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       354 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      . +..+.....++..+.|+|..+.+++.++-||.|-|+.+.+.....
T Consensus       288 v-l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~  333 (1049)
T KOG0307|consen  288 V-LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL  333 (1049)
T ss_pred             E-eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence            6 456666778999999999998899999999999999998876433

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.92  E-value=6.6e-23  Score=177.05  Aligned_cols=316  Identities=17%  Similarity=0.243  Sum_probs=219.9

Q ss_pred             eEeecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      +.+.++ ...+|.++.|   .++.. .||||+.|..|+||-++...+...    ......+..+..|..+|+++.|+|+|
T Consensus         6 ~ei~wH-~~~pv~s~df---q~n~~~~laT~G~D~~iriW~v~r~~~~~~----~~~V~y~s~Ls~H~~aVN~vRf~p~g   77 (434)
T KOG1009|consen    6 IEISWH-DHEPVYSVDF---QKNSLNKLATAGGDKDIRIWKVNRSEPGGG----DMKVEYLSSLSRHTRAVNVVRFSPDG   77 (434)
T ss_pred             eEEEec-CCCceEEEEe---ccCcccceecccCccceeeeeeeecCCCCC----ceeEEEeecccCCcceeEEEEEcCCc
Confidence            344444 5678999999   66655 999999999999999887654221    12334567889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCC--------C--------CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC
Q 010390          121 TNILTASGDQTIKIWDAE--------K--------KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS  184 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~--------~--------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  184 (512)
                      +.|++|+.+|.|.+|...        +        ......+.+|...|..++|+|++ +++++++.|..+++||+..+.
T Consensus        78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~  156 (434)
T KOG1009|consen   78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQ  156 (434)
T ss_pred             CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccce
Confidence            999999999999999765        2        12345567899999999999998 999999999999999999776


Q ss_pred             CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC---
Q 010390          185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW---  261 (512)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~---  261 (512)
                      ...                           .+..|...+..++|.|-++++++-+ .|...+.+.+...+.......   
T Consensus       157 l~~---------------------------~~~dh~~yvqgvawDpl~qyv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m  208 (434)
T KOG1009|consen  157 LLA---------------------------ILDDHEHYVQGVAWDPLNQYVASKS-SDRHPEGFSAKLKQVIKRHGLDIM  208 (434)
T ss_pred             eEe---------------------------eccccccccceeecchhhhhhhhhc-cCcccceeeeeeeeeeeeeeeeEe
Confidence            544                           4457788999999999999888766 466666666654433322110   


Q ss_pred             -----CCcccccccccc----ccCeeEEEeCCCCCEEEEEec----C-----CeEEEEEcccCCCCceEeeeeceeceeE
Q 010390          262 -----PHAESSSAKETR----LHGISSLSQDSNGVFLTASCM----D-----HRIYLYNVLQLDKGPIQHFSGCRIESFY  323 (512)
Q Consensus       262 -----~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~  323 (512)
                           .+.........|    ..-...++|+|+|.+|++...    .     +..++|+-... ..+...+.+...  ..
T Consensus       209 ~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l-~rP~~~lp~~~k--~~  285 (434)
T KOG1009|consen  209 PAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL-KRPAARLPSPKK--PA  285 (434)
T ss_pred             eecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc-cCceeecCCCCc--ce
Confidence                 000000001111    223567899999999887542    2     23455553321 223333322211  11


Q ss_pred             EEEEEC------------------CCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390          324 VKSEIC------------------PNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD  385 (512)
Q Consensus       324 ~~~~~s------------------~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  385 (512)
                      ..+.++                  |-+-.+|.++ .+.|+|||.++.......-.-|-..|++++|+++| ..|+..|.|
T Consensus       286 lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~D  363 (434)
T KOG1009|consen  286 LAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTD  363 (434)
T ss_pred             EEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCC-cEEEEeccC
Confidence            122222                  2223345555 55699999988776555566789999999999999 899999999


Q ss_pred             CcEEEEeCCCCccc
Q 010390          386 YTVRLWSLENSRCS  399 (512)
Q Consensus       386 g~i~vwd~~~~~~~  399 (512)
                      |-..+-.++..++-
T Consensus       364 GyCS~vtfe~~elg  377 (434)
T KOG1009|consen  364 GFCSLVTFEPWELG  377 (434)
T ss_pred             CceEEEEEcchhcc
Confidence            99988888877654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=3.2e-23  Score=187.37  Aligned_cols=275  Identities=15%  Similarity=0.173  Sum_probs=207.6

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      +-..+.+|++.|.+|...|.|.+|++|+.||+|+||.+.+|.|+.++. ..+.|.||+|+|.....++++..+..+.+-+
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            345678999999999999999999999999999999999999999887 4568999999998866666666666677777


Q ss_pred             CCCCCCCCCccccceeeecccc----------cccccccccccceecccccccEEEEEEeecCCEEEEEeecC--CeEEE
Q 010390          180 LRCKSSPKSNCAESFVFSSAVV----------KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--SIVKF  247 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--g~i~i  247 (512)
                      ..-+..+.....+..+......          ...........+.....|...|..+.||..|.+++++...+  ..|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            6555333322222222111000          00000011122345567889999999999999999876433  46888


Q ss_pred             EeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEE
Q 010390          248 WDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE  327 (512)
Q Consensus       248 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  327 (512)
                      .++.......           .+....+.|.++.|+|...+|++++ ...|++||+..  +..++.+.  .....+..++
T Consensus       551 HQLSK~~sQ~-----------PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k--qelvKkL~--tg~kwiS~ms  614 (733)
T KOG0650|consen  551 HQLSKRKSQS-----------PFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK--QELVKKLL--TGSKWISSMS  614 (733)
T ss_pred             EecccccccC-----------chhhcCCceeEEEecCCCceEEEEe-ccceEEEehhH--HHHHHHHh--cCCeeeeeee
Confidence            8887665442           3455567799999999999998885 56899999865  22222221  1224577799


Q ss_pred             ECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          328 ICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       328 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      .+|.|.-|+.|+.|+.+..||+.-...+...+..|...|++|+|++.- .++++|+.||++.|+.
T Consensus       615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFH  678 (733)
T ss_pred             ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEe
Confidence            999999999999999999999998888788999999999999999988 6999999999999875

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=8.3e-25  Score=201.76  Aligned_cols=257  Identities=19%  Similarity=0.319  Sum_probs=209.9

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG  144 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  144 (512)
                      +.+++.+-.+-.+++||.+.                   +-.|...|.++..-..++.+++|+.|..+-+|.+.....+.
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~-------------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~   64 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE-------------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT   64 (825)
T ss_pred             ccccceeeeeeccccccchh-------------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh
Confidence            34555556666788888643                   34688888888886788899999999999999998888888


Q ss_pred             cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390          145 ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT  224 (512)
Q Consensus       145 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  224 (512)
                      .+.+|..+|.++.|++.. .+|++|+.+|+|++||++....                           .+.+.+|...+.
T Consensus        65 S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~---------------------------vrtLtgh~~~~~  116 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKI---------------------------VRTLTGHLLNIT  116 (825)
T ss_pred             eeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhh---------------------------hhhhhccccCcc
Confidence            899999999999999987 8999999999999999985433                           336678888999


Q ss_pred             EEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc
Q 010390          225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL  304 (512)
Q Consensus       225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  304 (512)
                      ++.|+|-+.+.+ .|+.|+.+++||++...+..           ...+|...+..+.|+|+|++++.++.|..+++||+.
T Consensus       117 sv~f~P~~~~~a-~gStdtd~~iwD~Rk~Gc~~-----------~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~  184 (825)
T KOG0267|consen  117 SVDFHPYGEFFA-SGSTDTDLKIWDIRKKGCSH-----------TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT  184 (825)
T ss_pred             eeeeccceEEec-cccccccceehhhhccCcee-----------eecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence            999999999885 48899999999999777665           355577889999999999999999999999999986


Q ss_pred             cCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC
Q 010390          305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD  384 (512)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~  384 (512)
                      .+  .....|..|.  ..+..+.|+|..-+++.|+.|+++++||+++.+. +.........|.+++|+|++ ..+++|..
T Consensus       185 ag--k~~~ef~~~e--~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~-I~s~~~~~~~v~~~~fn~~~-~~~~~G~q  258 (825)
T KOG0267|consen  185 AG--KLSKEFKSHE--GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV-ISSGKPETDGVRSLAFNPDG-KIVLSGEQ  258 (825)
T ss_pred             cc--cccccccccc--ccccccccCchhhhhccCCCCceeeeeccceeEE-eeccCCccCCceeeeecCCc-eeeecCch
Confidence            53  3444555443  3355577999999999999999999999987654 33444457789999999999 77777765


Q ss_pred             CC
Q 010390          385 DY  386 (512)
Q Consensus       385 dg  386 (512)
                      +.
T Consensus       259 ~s  260 (825)
T KOG0267|consen  259 IS  260 (825)
T ss_pred             hh
Confidence            53

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=1.5e-23  Score=176.04  Aligned_cols=280  Identities=14%  Similarity=0.227  Sum_probs=199.3

Q ss_pred             ccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC-CEEEEE
Q 010390           49 EETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED-TNILTA  126 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~  126 (512)
                      |...-+.++|+--+.++ -+||+|+.-|.|+|.|+.+++.             ...+.+|...|+.+.++|+. ++|+++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-------------~~~~~ghG~sINeik~~p~~~qlvls~  154 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-------------SKNYRGHGGSINEIKFHPDRPQLVLSA  154 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-------------ccceeccCccchhhhcCCCCCcEEEEe
Confidence            66677788886555544 4899999999999999987643             67789999999999999955 677899


Q ss_pred             eCCCcEEEEeCCCCeeeecc---cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          127 SGDQTIKIWDAEKKKCTGAL---MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       127 ~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      +.|..|++||+++..++..+   .+|.+.|.++.|++++ .+|++++.|.+|++|++...+........     ..+.+.
T Consensus       155 SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s-----~~~~~~  228 (385)
T KOG1034|consen  155 SKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELS-----ITYSPN  228 (385)
T ss_pred             cCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhh-----cccCCC
Confidence            99999999999999998876   6799999999999999 79999999999999999854432211100     000110


Q ss_pred             ccc---cccc---ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc---cccccccc
Q 010390          204 AHL---LSQS---KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES---SSAKETRL  274 (512)
Q Consensus       204 ~~~---~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~  274 (512)
                      ...   ....   ........|...|.|+.|.-  .++++-+ -++.|..|..-..........+....   ...+.-..
T Consensus       229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~  305 (385)
T KOG1034|consen  229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM  305 (385)
T ss_pred             CccCcCCccccccccccccccccchHHHHHHHh--hheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence            000   0000   00113456777888888864  5566544 47799999884332222111111110   01122223


Q ss_pred             cCeeE--EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          275 HGISS--LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       275 ~~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      ..|.-  .+|++-++.|+.|...|.|.+||++..+.....++..+.....+...+|+.|+.+|+...+|++|.-||..
T Consensus       306 c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  306 CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            33444  45567789999999999999999988766555566666666778889999999999999999999999853

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.3e-24  Score=198.84  Aligned_cols=238  Identities=23%  Similarity=0.324  Sum_probs=199.7

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  124 (512)
                      +..-|...|.++..   -..++.+++|+.|-.+-||.+.....             +..+.+|+.+|.++.|+++..+|+
T Consensus        23 ~~~~hsaav~~lk~---~~s~r~~~~Gg~~~k~~L~~i~kp~~-------------i~S~~~hespIeSl~f~~~E~Lla   86 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKI---RKSSRSLVTGGEDEKVNLWAIGKPNA-------------ITSLTGHESPIESLTFDTSERLLA   86 (825)
T ss_pred             hhhhhhhhhceeee---eccceeeccCCCceeeccccccCCch-------------hheeeccCCcceeeecCcchhhhc
Confidence            33447777877777   56788999999999999999865433             556899999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      +|+.+|+|++||++..+.++++.+|...+.++.|+|.+ .++++|+.|+.+++||.+...+..                 
T Consensus        87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~-----------------  148 (825)
T KOG0267|consen   87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSH-----------------  148 (825)
T ss_pred             ccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCcee-----------------
Confidence            99999999999999999999999999999999999998 888999999999999998554433                 


Q ss_pred             ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS  284 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (512)
                                .+.+|...+..+.|.|+|.+++..| +|..+++||...++...           .+..|...+.++.|+|
T Consensus       149 ----------~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~~-----------ef~~~e~~v~sle~hp  206 (825)
T KOG0267|consen  149 ----------TYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLSK-----------EFKSHEGKVQSLEFHP  206 (825)
T ss_pred             ----------eecCCcceeEEEeecCCCceeeccC-Ccceeeeeccccccccc-----------ccccccccccccccCc
Confidence                      4456778899999999999999844 79999999999887665           5677888999999999


Q ss_pred             CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390          285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG  342 (512)
Q Consensus       285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  342 (512)
                      ...+++.|+.|+++++||+++.+  .+.  .+......+.+.+|+|++..+++|..+.
T Consensus       207 ~e~Lla~Gs~d~tv~f~dletfe--~I~--s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  207 LEVLLAPGSSDRTVRFWDLETFE--VIS--SGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             hhhhhccCCCCceeeeeccceeE--Eee--ccCCccCCceeeeecCCceeeecCchhh
Confidence            99999999999999999986421  111  1112234577899999999999987654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.91  E-value=9.2e-23  Score=166.24  Aligned_cols=312  Identities=15%  Similarity=0.109  Sum_probs=211.8

Q ss_pred             eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEEecCC
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCWIKED  120 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~  120 (512)
                      .++.+++|.+.|+++.|   -.++ +|.+|...|.|++|++++...             ...+. .|...|+.+.--|+ 
T Consensus         6 P~fvLRp~~~~v~s~~f---qa~~-rL~sg~~~G~V~~w~lqt~r~-------------~~~~r~~g~~~it~lq~~p~-   67 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLF---QANE-RLMSGLSVGIVKMWVLQTERD-------------LPLIRLFGRLFITNLQSIPN-   67 (323)
T ss_pred             CeeEeccccchheehhh---ccch-hhhcccccceEEEEEeecCcc-------------chhhhhhccceeeceeecCC-
Confidence            45667799999999999   4444 599999999999999988754             44555 56788999998887 


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC-cEEEEeCCCCCCCCCccccceeeecc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG-SFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      ..|.+-+.|+.+.+|++.-+..+.   -|.-.++++-|++..   +...+... .+-.++-+...........       
T Consensus        68 d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g-------  134 (323)
T KOG0322|consen   68 DSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGG-------  134 (323)
T ss_pred             cchhhcCCCceEEEEEccCcceEE---Eeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccC-------
Confidence            578888999999999997754332   244566777776532   33333322 2222222221111000000       


Q ss_pred             cccccccccccccceecccccccEEEEEEe--ecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYL--KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                           ................+.+++..+.  .....++.+|.++|.+.+||+.++......... .........|..+|
T Consensus       135 -----~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~-~kv~~~~ash~qpv  208 (323)
T KOG0322|consen  135 -----DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS-SKVESPNASHKQPV  208 (323)
T ss_pred             -----ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccc-cccccchhhccCcc
Confidence                 0000000001122334567777643  234567788999999999999987544332111 11122456788899


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCC-ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG-PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                      .++.+.+....=++|+.+..+..|.+...... ++...... .+..+..+.+-||++.+|+++.|+.||||+.++... +
T Consensus       209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p-L  286 (323)
T KOG0322|consen  209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP-L  286 (323)
T ss_pred             eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCc-h
Confidence            99999987777788888889999998653221 11111111 112244578889999999999999999999999876 5


Q ss_pred             ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      ..+..|.+.|++++|+|+. .++|++|.|++|.+|++
T Consensus       287 AVLkyHsagvn~vAfspd~-~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  287 AVLKYHSAGVNAVAFSPDC-ELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence            7899999999999999998 79999999999999986

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.7e-22  Score=166.22  Aligned_cols=254  Identities=13%  Similarity=0.138  Sum_probs=186.3

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390          111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC  190 (512)
Q Consensus       111 V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  190 (512)
                      ..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++| +.|++++.|..|.+||+..+...... 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~ri-  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRI-  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEE-
Confidence            7899999999999999999999999999999989999999999999999998 99999999999999999988765543 


Q ss_pred             ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390          191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                                                 ....+|+.+.|+|.....+++.-.+..-.+-++............       .
T Consensus       104 ---------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~-------d  149 (405)
T KOG1273|consen  104 ---------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDD-------D  149 (405)
T ss_pred             ---------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCC-------c
Confidence                                       235689999999977666555555655666666543322211100       0


Q ss_pred             cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      ......-.+..|++.|+++++|...|.+.++|..+.+.  +..+.-.. ...+..+.++..|++|+..+.|..|+.|++.
T Consensus       150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~--vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC--VASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             cccccccccccccCCCCEEEEecCcceEEEEecchhee--eeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            11111223346889999999999999999999876533  22222211 2346678899999999999999999999986


Q ss_pred             CCC------CCC--ceec--cccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCCCcccccccC
Q 010390          351 KPQ------ADP--IKLK--SHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLENSRCSSMRSP  404 (512)
Q Consensus       351 ~~~------~~~--~~~~--~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~  404 (512)
                      .--      .+.  ..+.  -....=.+++|+.+| .+++.++ .-..++||.-..|.+++.++-
T Consensus       227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~GsLVKILhG  290 (405)
T KOG1273|consen  227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGSLVKILHG  290 (405)
T ss_pred             hhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCcceeeeecC
Confidence            321      100  0010  012234567899999 5666555 556899999999999887653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=3.7e-21  Score=177.47  Aligned_cols=272  Identities=11%  Similarity=0.080  Sum_probs=183.8

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEE-EEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIF-AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~l-atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      ...+.+|.. +.++.|   +|+|+.+ ++++.++.|++||..+++.             ...+..+. .+..++|+|+++
T Consensus        24 ~~~~~~~~~-~~~l~~---~~dg~~l~~~~~~~~~v~~~d~~~~~~-------------~~~~~~~~-~~~~~~~~~~g~   85 (300)
T TIGR03866        24 TRTFPVGQR-PRGITL---SKDGKLLYVCASDSDTIQVIDLATGEV-------------IGTLPSGP-DPELFALHPNGK   85 (300)
T ss_pred             EEEEECCCC-CCceEE---CCCCCEEEEEECCCCeEEEEECCCCcE-------------EEeccCCC-CccEEEECCCCC
Confidence            334444433 567777   9999876 5677889999999876532             33333333 356789999999


Q ss_pred             EEEE-EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC-cEEEEeCCCCCCCCCccccceeeecc
Q 010390          122 NILT-ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG-SFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       122 ~l~s-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      .+++ ++.|+.|++||+.+++.+..+.. ...+.+++|+|++ .+++++..++ .+.+||..+......           
T Consensus        86 ~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~-----------  152 (300)
T TIGR03866        86 ILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDN-----------  152 (300)
T ss_pred             EEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEE-----------
Confidence            8765 45689999999999887777653 3357889999988 7788777765 567788765432110           


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                      . .....+.++.|++++..+++++..++.|.+||+++++..........    ...........
T Consensus       153 ----------------~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~  211 (300)
T TIGR03866       153 ----------------V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP----GVHPEAVQPVG  211 (300)
T ss_pred             ----------------E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc----ccccccCCccc
Confidence                            0 11224567899999999887666799999999998765443211100    00001112456


Q ss_pred             EEeCCCCCEEEEE-ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCCCCCCc
Q 010390          280 LSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQVNKPQADPI  357 (512)
Q Consensus       280 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~  357 (512)
                      ++|+|++++++++ ..++.|.+||+.+.+  ......   ....+.+++|+|+|++|+++ ..++.|++||+.+.+.. .
T Consensus       212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~~--~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~-~  285 (300)
T TIGR03866       212 IKLTKDGKTAFVALGPANRVAVVDAKTYE--VLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI-K  285 (300)
T ss_pred             eEECCCCCEEEEEcCCCCeEEEEECCCCc--EEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE-E
Confidence            8899999986554 456789999986532  222221   12346679999999999876 56899999999987653 4


Q ss_pred             eeccccCCeEEEEeCC
Q 010390          358 KLKSHDGEVTAVNWCP  373 (512)
Q Consensus       358 ~~~~h~~~v~~v~~~~  373 (512)
                      .+.. ....+.++++|
T Consensus       286 ~~~~-~~~~~~~~~~~  300 (300)
T TIGR03866       286 SIKV-GRLPWGVVVRP  300 (300)
T ss_pred             EEEc-ccccceeEeCC
Confidence            4443 35568888765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.4e-22  Score=167.32  Aligned_cols=282  Identities=13%  Similarity=0.235  Sum_probs=199.1

Q ss_pred             cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--EDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      ..+|++..+|.|+|||..++.             .+..+++|...++.+.|..  ....+.+|+.||+|++||++.....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~-------------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~  107 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ-------------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES  107 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh-------------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence            579999999999999998763             3778899999999999987  4567889999999999999887654


Q ss_pred             ecc--cCcC-CCEEEEEeeCCCCCeEEEEeC----CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceec
Q 010390          144 GAL--MGHT-GSIKSLCSHPTNSDILVSGSR----DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR  216 (512)
Q Consensus       144 ~~~--~~h~-~~v~~l~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (512)
                      ..+  ..+. .+..+++..-.+ +++++|..    |-.|.+||++..+....                         ...
T Consensus       108 a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~-------------------------~~~  161 (376)
T KOG1188|consen  108 ARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLR-------------------------QLN  161 (376)
T ss_pred             hheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhh-------------------------hhh
Confidence            443  3444 456677665444 67777753    67899999997654211                         134


Q ss_pred             ccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecC
Q 010390          217 KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMD  295 (512)
Q Consensus       217 ~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d  295 (512)
                      ..|...|+++.|+|....++.+|+.||.|.+||+......-..        .....+...|.++.|..++ +.+.+-+..
T Consensus       162 eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL--------~~viN~~sSI~~igw~~~~ykrI~clTH~  233 (376)
T KOG1188|consen  162 ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL--------LHVINHGSSIHLIGWLSKKYKRIMCLTHM  233 (376)
T ss_pred             hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH--------HHhhcccceeeeeeeecCCcceEEEEEcc
Confidence            5788999999999999999999999999999999865322111        1344556679999999877 458888899


Q ss_pred             CeEEEEEcccCCCCceEeeee--------ceeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCC---C--CCCCceecc
Q 010390          296 HRIYLYNVLQLDKGPIQHFSG--------CRIESFYVKSEICPNASHILS-GSSDGNAYVWQVNK---P--QADPIKLKS  361 (512)
Q Consensus       296 g~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~---~--~~~~~~~~~  361 (512)
                      +...+|+++............        .....+++..-...+....+. |+.-|...++-+..   +  ......+.+
T Consensus       234 Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g  313 (376)
T KOG1188|consen  234 ETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG  313 (376)
T ss_pred             CceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC
Confidence            999999997755321111110        001122222222233444444 44356666665542   1  122344555


Q ss_pred             -ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          362 -HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       362 -h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                       |...|+++.|...+ ..+.|||.||.+.+|..+.
T Consensus       314 ~~~eiVR~i~~~~~~-~~l~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  314 GHEEIVRDILFDVKN-DVLYTGGEDGLLQAWKVED  347 (376)
T ss_pred             CcHHHHHHHhhhccc-ceeeccCCCceEEEEecCC
Confidence             77889999998877 8999999999999999644

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=1.9e-22  Score=183.62  Aligned_cols=130  Identities=18%  Similarity=0.180  Sum_probs=104.1

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  124 (512)
                      .+.+|.+.|..+.|.+|  +..+||||+.|..|+||.+..+.....       ...-..+.+..-.|.++.|+|..+-|+
T Consensus        74 ~l~~H~d~VtDl~FspF--~D~LLAT~S~D~~VKiW~lp~g~~q~L-------Sape~~~g~~~~~vE~l~fHpTaDgil  144 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPF--ADELLATCSRDEPVKIWKLPRGHSQKL-------SAPEIDVGGGNVIVECLRFHPTADGIL  144 (1012)
T ss_pred             eeecccceeeccCcccc--chhhhhcccCCCeeEEEecCCCccccc-------CCcceeecCCceEEEEeecccCcCceE
Confidence            45679999999999655  456999999999999999874422100       011122333345788999999766677


Q ss_pred             EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC
Q 010390          125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS  184 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  184 (512)
                      ..+.-|+++|||+.+++.+..+.+|...|.++.|+.+| .+|++.+.|..|+|||.+..-
T Consensus       145 ~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPRa~~  203 (1012)
T KOG1445|consen  145 ASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPRASM  203 (1012)
T ss_pred             EeccCceEEEEEcccCceeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCccCC
Confidence            66678999999999999999999999999999999998 999999999999999998643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.2e-22  Score=173.35  Aligned_cols=252  Identities=16%  Similarity=0.144  Sum_probs=196.3

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS  185 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  185 (512)
                      .+.|+++.|+|....|++|+.|++++||.+...  ..++.+.-...+|.+.+|.|+|...+++++....+..||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            478999999999999999999999999988643  456666666789999999999955999999999999999987765


Q ss_pred             CCCccccceeeecccccccccccccccceecccc-cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390          186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA-SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA  264 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~  264 (512)
                      .+....                         .++ ...+.....++++++++..| ..|.|.+....++..+...     
T Consensus       293 ~k~~~~-------------------------~g~e~~~~e~FeVShd~~fia~~G-~~G~I~lLhakT~eli~s~-----  341 (514)
T KOG2055|consen  293 TKLKPP-------------------------YGVEEKSMERFEVSHDSNFIAIAG-NNGHIHLLHAKTKELITSF-----  341 (514)
T ss_pred             ccccCC-------------------------CCcccchhheeEecCCCCeEEEcc-cCceEEeehhhhhhhhhee-----
Confidence            442211                         111 23567778899999999977 7999999998888766433     


Q ss_pred             cccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390          265 ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA  344 (512)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  344 (512)
                             ...+.|..++|+.+++.|++++.+|.|.+||++..  ..+..+.... ...-+.++.++++.+||+|+..|.|
T Consensus       342 -------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~--~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiV  411 (514)
T KOG2055|consen  342 -------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN--SCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIV  411 (514)
T ss_pred             -------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc--ceEEEEeecC-ccceeeeeecCCCceEEeccCcceE
Confidence                   23356899999999999999999999999999875  3333333221 1234568889999999999999999


Q ss_pred             EEEecCCC-----CCCCceeccccCCeEEEEeCCCCCCeEEEEe--CCCcEEEEeCCCCccccc
Q 010390          345 YVWQVNKP-----QADPIKLKSHDGEVTAVNWCPNEAGKIVTSS--DDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       345 ~iw~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~  401 (512)
                      .|||.++.     ..++..+..-...|++++|++|. ++|+.+|  .+..+++-.+.+...-..
T Consensus       412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFsN  474 (514)
T KOG2055|consen  412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFSN  474 (514)
T ss_pred             EEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeecc
Confidence            99997642     23345566667889999999999 8888777  567888888877665443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=4.2e-22  Score=174.03  Aligned_cols=246  Identities=15%  Similarity=0.270  Sum_probs=192.0

Q ss_pred             EEEEEec-------CCCEEEEEeCCCcEEEEeCCCCee---------------------eecccCcCCCEEEEEeeCCCC
Q 010390          112 FDLCWIK-------EDTNILTASGDQTIKIWDAEKKKC---------------------TGALMGHTGSIKSLCSHPTNS  163 (512)
Q Consensus       112 ~~l~~s~-------~~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~h~~~v~~l~~~~~~~  163 (512)
                      .|++|..       -|+++|.|+.|..|.|||+.-...                     -..-.+|+..|.+++|+..-.
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            4566643       368999999999999999852110                     011246999999999998888


Q ss_pred             CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC
Q 010390          164 DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS  243 (512)
Q Consensus       164 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg  243 (512)
                      +.||+|+.|.+|++||+.++++..                           .+..|...|.++.|+|....++.+|+.|+
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~---------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~  309 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKS---------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDG  309 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcce---------------------------ehhhcCCceeEEEecCCCceEEEeccccc
Confidence            899999999999999999887654                           44567889999999999988888899999


Q ss_pred             eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCceEeeeeceecee
Q 010390          244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESF  322 (512)
Q Consensus       244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  322 (512)
                      +|.+.|.+......           ......+.|..++|++... .++++..||+++-+|++... .++..+..|.  ..
T Consensus       310 ~V~l~D~R~~~~s~-----------~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd--~~  375 (463)
T KOG0270|consen  310 TVALKDCRDPSNSG-----------KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHD--DE  375 (463)
T ss_pred             eEEeeeccCccccC-----------ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEecc--CC
Confidence            99999999633221           2344457799999998654 67778899999999998864 6777777775  45


Q ss_pred             EEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceecccc---CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          323 YVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLKSHD---GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       323 ~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      |.+++++.. ..++++++.|+.|++|++......  ....|.   +...|.++.|+-+..++.||..+.++|||+.+...
T Consensus       376 ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  376 ISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             cceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            788888876 457889999999999999765442  222232   34677788898878999999999999999988765


Q ss_pred             cc
Q 010390          399 SS  400 (512)
Q Consensus       399 ~~  400 (512)
                      +.
T Consensus       454 V~  455 (463)
T KOG0270|consen  454 VR  455 (463)
T ss_pred             HH
Confidence            44

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=7.1e-22  Score=180.99  Aligned_cols=278  Identities=16%  Similarity=0.215  Sum_probs=208.8

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT  131 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~  131 (512)
                      .|..|+|   -|||..|+.+. +..+.|||.+.+.             .+.++++|++.|++++|+.||+.+++|+.|..
T Consensus        14 ci~d~af---kPDGsqL~lAA-g~rlliyD~ndG~-------------llqtLKgHKDtVycVAys~dGkrFASG~aDK~   76 (1081)
T KOG1538|consen   14 CINDIAF---KPDGTQLILAA-GSRLLVYDTSDGT-------------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKS   76 (1081)
T ss_pred             chheeEE---CCCCceEEEec-CCEEEEEeCCCcc-------------cccccccccceEEEEEEccCCceeccCCCcee
Confidence            6778888   99999777765 4479999998774             48899999999999999999999999999999


Q ss_pred             EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390          132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK  211 (512)
Q Consensus       132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (512)
                      |.+|+..-...+ .+ .|.+.|.|+.|+|-. +.|++++.. ..-+|........+.                       
T Consensus        77 VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K~-----------------------  129 (1081)
T KOG1538|consen   77 VIIWTSKLEGIL-KY-SHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSKH-----------------------  129 (1081)
T ss_pred             EEEeccccccee-ee-ccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHhh-----------------------
Confidence            999985432222 22 489999999999987 889998874 577888765433221                       


Q ss_pred             cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-----
Q 010390          212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-----  286 (512)
Q Consensus       212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----  286 (512)
                            .....+.+.+|..||.+++. |-.||+|.+-+..........         ...+...+|.+++|+|..     
T Consensus       130 ------kss~R~~~CsWtnDGqylal-G~~nGTIsiRNk~gEek~~I~---------Rpgg~Nspiwsi~~~p~sg~G~~  193 (1081)
T KOG1538|consen  130 ------KSSSRIICCSWTNDGQYLAL-GMFNGTISIRNKNGEEKVKIE---------RPGGSNSPIWSICWNPSSGEGRN  193 (1081)
T ss_pred             ------hhheeEEEeeecCCCcEEEE-eccCceEEeecCCCCcceEEe---------CCCCCCCCceEEEecCCCCCCcc
Confidence                  12346889999999999988 668999999765443332221         234456789999999863     


Q ss_pred             CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCe
Q 010390          287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEV  366 (512)
Q Consensus       287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v  366 (512)
                      ..+++.....++.+|.+.......-+.+.     -...|+.+.++|.+++.|+.|+.+++|.-+.-.  +.+....+.+|
T Consensus       194 di~aV~DW~qTLSFy~LsG~~Igk~r~L~-----FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gvr--LGTvg~~D~WI  266 (1081)
T KOG1538|consen  194 DILAVADWGQTLSFYQLSGKQIGKDRALN-----FDPCCISYFTNGEYILLGGSDKQLSLFTRDGVR--LGTVGEQDSWI  266 (1081)
T ss_pred             ceEEEEeccceeEEEEecceeecccccCC-----CCchhheeccCCcEEEEccCCCceEEEeecCeE--EeeccccceeE
Confidence            46777777777777776432211111111     123468888999999999999999999654422  34555567899


Q ss_pred             EEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          367 TAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       367 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +.++..|++ +.++.|+.||+|-.|++....
T Consensus       267 WtV~~~PNs-Q~v~~GCqDGTiACyNl~fST  296 (1081)
T KOG1538|consen  267 WTVQAKPNS-QYVVVGCQDGTIACYNLIFST  296 (1081)
T ss_pred             EEEEEccCC-ceEEEEEccCeeehhhhHHhH
Confidence            999999999 899999999999999976543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=7.2e-22  Score=168.99  Aligned_cols=231  Identities=15%  Similarity=0.199  Sum_probs=174.8

Q ss_pred             ccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390          146 LMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT  224 (512)
Q Consensus       146 ~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  224 (512)
                      ..+|.+.++.+.-.+.+ ..+.++-+..|.|.||++...-.....  .         ...........+..+.+|...=.
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~--~---------~~~~~~s~~~Pl~t~~ghk~EGy  215 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSE--P---------GLEVKDSEFRPLFTFNGHKGEGY  215 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcC--c---------cccccccccCceEEecccCccce
Confidence            34588888888887764 345666678899999998643211100  0         00001134455667888999999


Q ss_pred             EEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEc
Q 010390          225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNV  303 (512)
Q Consensus       225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~  303 (512)
                      .++|+|-..-.+.+|.--+.|++|...++.-..-..        .+.+|...|..++|+|.. ..|++|+.||+|+|||+
T Consensus       216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~--------Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi  287 (440)
T KOG0302|consen  216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR--------PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI  287 (440)
T ss_pred             eeecccccccccccCccccceEeeeeccCceeecCc--------cccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence            999999555544446566789999988865443221        466799999999999965 47889999999999999


Q ss_pred             ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC--CCCceeccccCCeEEEEeCCCCCCeEEE
Q 010390          304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ--ADPIKLKSHDGEVTAVNWCPNEAGKIVT  381 (512)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~l~s  381 (512)
                      +............|.  .-|..+.|+.+..+||+|+.||+++|||++..+  .++..+..|..+|++|.|+|.....|++
T Consensus       288 Rs~~~~~~~~~kAh~--sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaa  365 (440)
T KOG0302|consen  288 RSGPKKAAVSTKAHN--SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAA  365 (440)
T ss_pred             cCCCccceeEeeccC--CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEe
Confidence            987665555555554  457779999998899999999999999998643  4567899999999999999988789999


Q ss_pred             EeCCCcEEEEeCCCCc
Q 010390          382 SSDDYTVRLWSLENSR  397 (512)
Q Consensus       382 ~~~dg~i~vwd~~~~~  397 (512)
                      +|.|..|.+||+.-..
T Consensus       366 sg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  366 SGEDNQITIWDLSVEA  381 (440)
T ss_pred             ccCCCcEEEEEeeccC
Confidence            9999999999997544

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.4e-20  Score=173.09  Aligned_cols=251  Identities=18%  Similarity=0.230  Sum_probs=198.3

Q ss_pred             cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee-eecccCc-CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC-TGALMGH-TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      --..+|.+++|+.+.+.||.+-.||.|.||++..+=. ...+.++ ...|.+++|++ + ..|++.+.+|.|.-||+.+.
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~-~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-G-GRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-C-CeEEeecCCceEEEEecccC
Confidence            3457999999999999999999999999999987632 3344444 46899999995 3 67899999999999999876


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      +...                           ......+.|++++.+|.+..+++ |++||.+..++...+......    
T Consensus       101 k~~~---------------------------~~d~~gg~IWsiai~p~~~~l~I-gcddGvl~~~s~~p~~I~~~r----  148 (691)
T KOG2048|consen  101 KQKY---------------------------NIDSNGGAIWSIAINPENTILAI-GCDDGVLYDFSIGPDKITYKR----  148 (691)
T ss_pred             ceeE---------------------------EecCCCcceeEEEeCCccceEEe-ecCCceEEEEecCCceEEEEe----
Confidence            5443                           33455678999999999988887 668998888888877766554    


Q ss_pred             ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee--e-ce-eceeEEEEEECCCCCEEEEec
Q 010390          264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS--G-CR-IESFYVKSEICPNASHILSGS  339 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-~~-~~~~~~~~~~s~~~~~l~~g~  339 (512)
                           .+....+.|.++.|++++..++.|+.||.|++||........+....  + .. ....+.++.|- ....|++|.
T Consensus       149 -----~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgD  222 (691)
T KOG2048|consen  149 -----SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGD  222 (691)
T ss_pred             -----ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEec
Confidence                 23344577999999999999999999999999998765443322211  1 11 23445666665 445789999


Q ss_pred             CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      .-|+|.+||...+.. ......|.+.|.+++..+++ .+++++|.|+.|..+...+...
T Consensus       223 S~G~V~FWd~~~gTL-iqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  223 SAGTVTFWDSIFGTL-IQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             CCceEEEEcccCcch-hhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCcc
Confidence            999999999998876 56788899999999999998 8999999999999998877743

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.89  E-value=8.8e-22  Score=169.44  Aligned_cols=214  Identities=18%  Similarity=0.264  Sum_probs=168.2

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCEE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTNI  123 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l  123 (512)
                      ...||+++|..++||+|  +.+.||+|+.|.+|.||++.......      .-..++..+.+|...|-.++|+|. .+.|
T Consensus        76 ~v~GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~------~ltepvv~L~gH~rrVg~V~wHPtA~NVL  147 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTR------DLTEPVVELYGHQRRVGLVQWHPTAPNVL  147 (472)
T ss_pred             CccCccccccccccCcc--CCceeecCCCCceEEEEECCCccccc------CcccceEEEeecceeEEEEeecccchhhH
Confidence            45789999999999866  66899999999999999987654322      123568889999999999999994 4678


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      ++++.|.+|.|||+.+|+.+.++. |.+.|++++|+-+| .+|++++.|..|+|||.++++.....              
T Consensus       148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~--------------  211 (472)
T KOG0303|consen  148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG--------------  211 (472)
T ss_pred             hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec--------------
Confidence            899999999999999999888888 99999999999988 99999999999999999988755422              


Q ss_pred             cccccccccceeccccc-ccEEEEEEeecCCEEEEEee---cCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          204 AHLLSQSKRVSRRKAAS-MSITSVLYLKDEVSIATASA---VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                   .+|. .....+.|..++. ++++|.   .+..+-+||..+.......         .......+|.-
T Consensus       212 -------------~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~---------~elDtSnGvl~  268 (472)
T KOG0303|consen  212 -------------VAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIAL---------QELDTSNGVLL  268 (472)
T ss_pred             -------------ccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCccee---------EEeccCCceEE
Confidence                         1222 2345667777887 666663   3678999998877655322         22233345666


Q ss_pred             EEeCCCCCEEEEE-ecCCeEEEEEccc
Q 010390          280 LSQDSNGVFLTAS-CMDHRIYLYNVLQ  305 (512)
Q Consensus       280 ~~~~~~~~~l~~~-~~dg~i~i~d~~~  305 (512)
                      --|++|...++.+ -.|+.|+.|.+..
T Consensus       269 PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  269 PFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             eeecCCCCEEEEEecCCcceEEEEecC
Confidence            6678888877654 4899999999865

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=7.5e-22  Score=192.04  Aligned_cols=255  Identities=23%  Similarity=0.325  Sum_probs=191.9

Q ss_pred             cceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC-CEEEEEeCCC
Q 010390           53 PLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED-TNILTASGDQ  130 (512)
Q Consensus        53 v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg  130 (512)
                      -+.++|+.+-.+. .+||.|..||.|.+||...-.       .+.+...+.+...|++.|..+.|++.. ..||+|+.||
T Consensus        67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~-------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g  139 (1049)
T KOG0307|consen   67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII-------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG  139 (1049)
T ss_pred             ceeeeecccCCCccceeeccccCCceEEecchhhc-------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence            3577774432211 259999999999999986531       113345688889999999999999955 4999999999


Q ss_pred             cEEEEeCCCCeeeecc--cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          131 TIKIWDAEKKKCTGAL--MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      .|.|||+...+.....  ....+.|.+++|+..-.++|++++.+|.+.|||++..+.+.....                 
T Consensus       140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~-----------------  202 (1049)
T KOG0307|consen  140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD-----------------  202 (1049)
T ss_pred             cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc-----------------
Confidence            9999999886554444  224578999999988778999999999999999997754332211                 


Q ss_pred             ccccceecccccccEEEEEEeecCCE-EEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVS-IATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                              ......+..+.|+|+... ++++..+|+  .|.+||+|.......          .++.|..+|.+|.|++.
T Consensus       203 --------~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k----------~~~~H~~GilslsWc~~  264 (1049)
T KOG0307|consen  203 --------TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK----------ILEGHQRGILSLSWCPQ  264 (1049)
T ss_pred             --------CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh----------hhcccccceeeeccCCC
Confidence                    111245789999998765 444443333  699999997765554          57889999999999986


Q ss_pred             C-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCC
Q 010390          286 G-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       286 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~  353 (512)
                      + .+|++++.|+.|.+|+.++++  .+..+..  ...++..+.|+|... .+++++-||.|.||.+....
T Consensus       265 D~~lllSsgkD~~ii~wN~~tgE--vl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  265 DPRLLLSSGKDNRIICWNPNTGE--VLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CchhhhcccCCCCeeEecCCCce--EeeecCC--CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            6 889999999999999987632  3333333  346788899999866 77889999999999987654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=9.2e-22  Score=177.09  Aligned_cols=276  Identities=18%  Similarity=0.257  Sum_probs=197.4

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .+-+.+..|.+-|+++.|   +|....|++++.||.|.+|+++....     .......++.+|.+|.++|.|+++.+++
T Consensus       285 ~ik~tl~s~~d~ir~l~~---~~sep~lit~sed~~lk~WnLqk~~~-----s~~~~~epi~tfraH~gPVl~v~v~~n~  356 (577)
T KOG0642|consen  285 NIKFTLRSHDDCIRALAF---HPSEPVLITASEDGTLKLWNLQKAKK-----SAEKDVEPILTFRAHEGPVLCVVVPSNG  356 (577)
T ss_pred             ceeeeeecchhhhhhhhc---CCCCCeEEEeccccchhhhhhcccCC-----ccccceeeeEEEecccCceEEEEecCCc
Confidence            344578889999999999   88889999999999999999954221     1224457799999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCC----------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390          121 TNILTASGDQTIKIWDAEKK----------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC  190 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  190 (512)
                      +++++|+.||+|+.|++...          .....+.||.+.|+.+++++.. ..|++++.||+++.|+........ + 
T Consensus       357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~-f-  433 (577)
T KOG0642|consen  357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCT-F-  433 (577)
T ss_pred             eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccc-c-
Confidence            99999999999999966421          2345678999999999999977 789999999999999987554310 0 


Q ss_pred             ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390          191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                                              ......+...++.+-.....+.++   +..+..+++........            
T Consensus       434 ------------------------~~~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~------------  474 (577)
T KOG0642|consen  434 ------------------------GEPKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSD------------  474 (577)
T ss_pred             ------------------------CCccccCCcceEeeccchhHhhhh---hcccccccchhhhhhhh------------
Confidence                                    001112233444443333222221   23333333332221110            


Q ss_pred             cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                               +       .++-.+.+...+.+                   ..+..+.+.|.+.+.+++..|+.|+++|..
T Consensus       475 ---------~-------~~~~s~~~~~~~~~-------------------~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  475 ---------L-------LIFESSASPGPRRY-------------------PQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             ---------e-------eeccccCCCccccc-------------------CccceEEecCCCCeeEecccCCceeccccc
Confidence                     0       01111111111111                   123346777889999999999999999999


Q ss_pred             CCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          351 KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       351 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      ++.. +.....|...++++++.|+| -+|++++.||.+++|.+....|.....
T Consensus       520 ~~~~-l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~~~~es~  570 (577)
T KOG0642|consen  520 TGKI-LHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKTCVLEST  570 (577)
T ss_pred             cccc-chheeeccceecceeecCCC-ceEEeecCCceeehhhccchheeeccc
Confidence            8876 56778899999999999999 799999999999999999888876533

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.88  E-value=9.6e-21  Score=156.55  Aligned_cols=288  Identities=14%  Similarity=0.196  Sum_probs=199.5

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCC-------CcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDED-------GYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCW  116 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~  116 (512)
                      .+..|.+.|..++-+++  |.++|+++..+       ..+.||.+........    ......+..+. .+-+.|.|+.|
T Consensus        58 vf~h~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~----~~tlE~v~~Ldteavg~i~cvew  131 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN----SSTLECVASLDTEAVGKINCVEW  131 (370)
T ss_pred             hhhcCCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccc----cchhhHhhcCCHHHhCceeeEEE
Confidence            34557899999999433  55688887542       2478999865432100    01122344443 45679999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCee-eecc-----cCcCCCEEEEEeeC-CCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390          117 IKEDTNILTASGDQTIKIWDAEKKKC-TGAL-----MGHTGSIKSLCSHP-TNSDILVSGSRDGSFAIWDLRCKSSPKSN  189 (512)
Q Consensus       117 s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~-----~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  189 (512)
                      .|++..|++-. |..|.+|++..+.. +..+     ..+....++-+|+| .+.+.+++. .|++++.||+++...... 
T Consensus       132 ~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s-  208 (370)
T KOG1007|consen  132 EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS-  208 (370)
T ss_pred             cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcc-
Confidence            99999999775 88899999988755 3332     22556678889999 333566654 578999999997654332 


Q ss_pred             cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390          190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA  269 (512)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  269 (512)
                                               ...+|...|..+.|+|+...+++++++||.|++||++..+....          .
T Consensus       209 -------------------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~----------e  253 (370)
T KOG1007|consen  209 -------------------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ----------E  253 (370)
T ss_pred             -------------------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc----------c
Confidence                                     33467778999999999999998888999999999998776654          6


Q ss_pred             ccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          270 KETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       270 ~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                      +..|.+.|.++.|+|. .+++++++.|..|.+|........+...+.....+        .++.     .+ .-.++  -
T Consensus       254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese--------~e~~-----ds-eer~k--p  317 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE--------SEDE-----DS-EERVK--P  317 (370)
T ss_pred             cCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccccc--------Ccch-----hh-HHhcc--c
Confidence            7888999999999995 45778999999999998754332221111100000        0000     00 01111  1


Q ss_pred             cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      +..+  .+.++..|++.|++++|+.-.+-++|+-+.||.+.|=.+.
T Consensus       318 L~dg--~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  318 LQDG--QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccc--ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            2222  2357888999999999999888999999999999886664

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=6.6e-21  Score=173.85  Aligned_cols=261  Identities=13%  Similarity=0.213  Sum_probs=181.4

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCEEE
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTNIL  124 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~  124 (512)
                      +.-|.+.|+.+.|   -|....|++++.|.++++||++.....           -...+.+|.+.|.+++|.|. ...++
T Consensus        96 ~~aH~nAifDl~w---apge~~lVsasGDsT~r~Wdvk~s~l~-----------G~~~~~GH~~SvkS~cf~~~n~~vF~  161 (720)
T KOG0321|consen   96 PLAHKNAIFDLKW---APGESLLVSASGDSTIRPWDVKTSRLV-----------GGRLNLGHTGSVKSECFMPTNPAVFC  161 (720)
T ss_pred             cccccceeEeecc---CCCceeEEEccCCceeeeeeeccceee-----------cceeecccccccchhhhccCCCccee
Confidence            4459999999999   776668999999999999999876431           13347899999999999994 55677


Q ss_pred             EEeCCCcEEEEeCCCCe---------------------------eeecccCcCCCEEE---EEeeCCCCCeEEEEeC-CC
Q 010390          125 TASGDQTIKIWDAEKKK---------------------------CTGALMGHTGSIKS---LCSHPTNSDILVSGSR-DG  173 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~~---------------------------~~~~~~~h~~~v~~---l~~~~~~~~~l~s~~~-dg  173 (512)
                      +|+.||.|.|||+.-..                           .+..-..+...|.+   +.+..|+ ..||+++. |+
T Consensus       162 tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~  240 (720)
T KOG0321|consen  162 TGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADS  240 (720)
T ss_pred             eccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCc
Confidence            99999999999985321                           01111234444554   4555666 78888887 99


Q ss_pred             cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc---cccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA---SMSITSVLYLKDEVSIATASAVNSIVKFWDT  250 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~  250 (512)
                      .|+|||++...........                   ....+..+   ...+.++.....|.++++.+ .|+.|++|++
T Consensus       241 ~iKVWDLRk~~~~~r~ep~-------------------~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm  300 (720)
T KOG0321|consen  241 TIKVWDLRKNYTAYRQEPR-------------------GSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNM  300 (720)
T ss_pred             ceEEEeecccccccccCCC-------------------cccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEec
Confidence            9999999976654322110                   01111122   34677888888899999877 5999999999


Q ss_pred             cCccceecccCCCccccccccccc--cCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE
Q 010390          251 RNLKAQITQAWPHAESSSAKETRL--HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI  328 (512)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (512)
                      ..........         +.++.  ..-..-..+|++.++++|+.|...++|.+...+. ....+.+|..+  +++++|
T Consensus       301 ~s~s~sP~~~---------~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~e--Vt~V~w  368 (720)
T KOG0321|consen  301 RSLSISPVAE---------FSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTRE--VTTVRW  368 (720)
T ss_pred             cccCcCchhh---------ccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC-ChhhhhCcceE--EEEEee
Confidence            9765433221         11111  1122234689999999999999999999977543 34445566544  556677


Q ss_pred             CCC-CCEEEEecCCCCEEEEecCCCC
Q 010390          329 CPN-ASHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       329 s~~-~~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      .|. -.-++++++|..++||++..+-
T Consensus       369 ~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  369 LPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             ccccCCCceeeccCcceEEEeccCch
Confidence            664 2335666999999999996543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.3e-21  Score=172.95  Aligned_cols=314  Identities=19%  Similarity=0.266  Sum_probs=240.8

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-  118 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-  118 (512)
                      -.+...+.+|.+.|..|.|   +..|..|++|+.|..|.+||.....+.            +.-..+|...|....|.| 
T Consensus       132 ~~l~~kL~~H~GcVntV~F---N~~Gd~l~SgSDD~~vv~WdW~~~~~~------------l~f~SGH~~NvfQaKFiP~  196 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHF---NQRGDVLASGSDDLQVVVWDWVSGSPK------------LSFESGHCNNVFQAKFIPF  196 (559)
T ss_pred             hhhhhcccCCCCccceeee---cccCceeeccCccceEEeehhhccCcc------------cccccccccchhhhhccCC
Confidence            3556678899999999999   899999999999999999999876442            333468999999999998 


Q ss_pred             -CCCEEEEEeCCCcEEEEeCCC-Cee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          119 -EDTNILTASGDQTIKIWDAEK-KKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       119 -~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                       +.+.|++++.||.|++=.+.. +.+  ...+..|.++|..++.-|..+..|.+++.|+.+.-+|++.........    
T Consensus       197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~----  272 (559)
T KOG1334|consen  197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV----  272 (559)
T ss_pred             CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee----
Confidence             567899999999999877543 322  344567999999999999999999999999999999998765433221    


Q ss_pred             eeecccccccccccccccceeccccc---ccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee-----cccCCCccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAAS---MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI-----TQAWPHAES  266 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~-----~~~~~~~~~  266 (512)
                                          ....+.   -....++.+|...+.+++|+.|-.+++||.+......     ....++.  
T Consensus       273 --------------------cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h--  330 (559)
T KOG1334|consen  273 --------------------CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH--  330 (559)
T ss_pred             --------------------eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc--
Confidence                                111111   2578889999888777677789999999998654431     1112221  


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCC----------CceE-eeeeceeceeEEEEE-ECCCCCE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDK----------GPIQ-HFSGCRIESFYVKSE-ICPNASH  334 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~-~~~~~~~~~~~~~~~-~s~~~~~  334 (512)
                        ........|++++++.++.-|+++..|-.|+++.-.....          ..+. .+.+|.....|-.+. |-|...|
T Consensus       331 --l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy  408 (559)
T KOG1334|consen  331 --LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY  408 (559)
T ss_pred             --ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence              2224455699999999888888888999999996433222          1222 377887777776665 5688999


Q ss_pred             EEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          335 ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       335 l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      +++|+.-|.|.||+-.+++. +..+.+-..-|+||.-+|.- -+||++|-|..|+||...+.+.
T Consensus       409 VvSGSDCGhIFiW~K~t~ei-i~~MegDr~VVNCLEpHP~~-PvLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  409 VVSGSDCGHIFIWDKKTGEI-IRFMEGDRHVVNCLEPHPHL-PVLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             EEecCccceEEEEecchhHH-HHHhhcccceEeccCCCCCC-chhhccCCccceeeecCCcccc
Confidence            99999999999999988776 45666666699999999988 5999999999999999865543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=4.3e-21  Score=169.94  Aligned_cols=224  Identities=18%  Similarity=0.239  Sum_probs=182.9

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT  131 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~  131 (512)
                      .-+||++..   ...|+++|+..+.|+|||++...             ..+.+++|+..|+++.++....|||+++..|.
T Consensus        81 ~~~Cv~~~s---~S~y~~sgG~~~~Vkiwdl~~kl-------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd  144 (673)
T KOG4378|consen   81 NAFCVACAS---QSLYEISGGQSGCVKIWDLRAKL-------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD  144 (673)
T ss_pred             hHHHHhhhh---cceeeeccCcCceeeehhhHHHH-------------HhhhccCCcceeEEEEecCCcceeEEeccCCc
Confidence            456777743   34899999999999999997543             36778999999999999999999999999999


Q ss_pred             EEEEeCCCCeeeecccCc-CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390          132 IKIWDAEKKKCTGALMGH-TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS  210 (512)
Q Consensus       132 i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (512)
                      |.|..+.++.....|... ...|.-+.|++....+|.+++.+|.|.+||+.......                       
T Consensus       145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~-----------------------  201 (673)
T KOG4378|consen  145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF-----------------------  201 (673)
T ss_pred             EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc-----------------------
Confidence            999999999887777644 34566899999887899999999999999998654332                       


Q ss_pred             ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEE
Q 010390          211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT  290 (512)
Q Consensus       211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  290 (512)
                         .....|..+...|+|+|....|+++-+.|..|.+||++.......            .....+...++|.++|.+|+
T Consensus       202 ---~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~------------l~y~~Plstvaf~~~G~~L~  266 (673)
T KOG4378|consen  202 ---HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR------------LTYSHPLSTVAFSECGTYLC  266 (673)
T ss_pred             ---chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce------------eeecCCcceeeecCCceEEE
Confidence               234578889999999998888777777899999999997655432            33446789999999999999


Q ss_pred             EEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390          291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA  332 (512)
Q Consensus       291 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  332 (512)
                      .|...|.|..||++.. ..++.....|...  +++++|-+..
T Consensus       267 aG~s~G~~i~YD~R~~-k~Pv~v~sah~~s--Vt~vafq~s~  305 (673)
T KOG4378|consen  267 AGNSKGELIAYDMRST-KAPVAVRSAHDAS--VTRVAFQPSP  305 (673)
T ss_pred             eecCCceEEEEecccC-CCCceEeeecccc--eeEEEeeecc
Confidence            9999999999999764 5567777766544  7788886654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=5.6e-20  Score=154.46  Aligned_cols=254  Identities=17%  Similarity=0.277  Sum_probs=183.4

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-------e-----eeccc-CcCCCEEEEEee-------CCCCCeEEEE
Q 010390          110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-------C-----TGALM-GHTGSIKSLCSH-------PTNSDILVSG  169 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~-----~~~~~-~h~~~v~~l~~~-------~~~~~~l~s~  169 (512)
                      -...+.|+|||..|++-+.|..+.+|++...-       .     ..+++ .....|..-+|.       |+. +++++.
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-~l~a~s  129 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-NLFAVS  129 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc-ceeeec
Confidence            34568999999999999999999999974310       0     01111 123567777776       444 789999


Q ss_pred             eCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEe
Q 010390          170 SRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWD  249 (512)
Q Consensus       170 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd  249 (512)
                      +.|.-|++||.-+++...........                      ..-....+++|+|||.+|++ | ....|++||
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~----------------------de~taAhsL~Fs~DGeqlfa-G-ykrcirvFd  185 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQ----------------------DEYTAAHSLQFSPDGEQLFA-G-YKRCIRVFD  185 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhH----------------------HhhhhheeEEecCCCCeEee-c-ccceEEEee
Confidence            99999999999988766543221100                      00124568999999999996 6 689999999


Q ss_pred             c-cCccceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEE
Q 010390          250 T-RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE  327 (512)
Q Consensus       250 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  327 (512)
                      + +.++.........    ....+..+-|.+++|+|.. ..+++++...++-||.-..  ..++..+.++.  .-|+.++
T Consensus       186 t~RpGr~c~vy~t~~----~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--~~pl~llggh~--gGvThL~  257 (406)
T KOG2919|consen  186 TSRPGRDCPVYTTVT----KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--RRPLQLLGGHG--GGVTHLQ  257 (406)
T ss_pred             ccCCCCCCcchhhhh----cccccccceeeeeeccCCCCcceeeecccceeeeEecCC--CCceeeecccC--CCeeeEE
Confidence            9 4443222111000    0133445678999999955 4899999988888887433  55666666664  5588999


Q ss_pred             ECCCCCEEEEecC-CCCEEEEecCCCCCCCceeccccC-CeEEE--EeCCCCCCeEEEEeCCCcEEEEeCCC-Cc
Q 010390          328 ICPNASHILSGSS-DGNAYVWQVNKPQADPIKLKSHDG-EVTAV--NWCPNEAGKIVTSSDDYTVRLWSLEN-SR  397 (512)
Q Consensus       328 ~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~h~~-~v~~v--~~~~~~~~~l~s~~~dg~i~vwd~~~-~~  397 (512)
                      |.++|+.|++|.. |-.|..||++....++..+..|.+ .=..|  ...|++ ++|++|+.||.|++||++. +.
T Consensus       258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn  331 (406)
T KOG2919|consen  258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGN  331 (406)
T ss_pred             eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCC
Confidence            9999999999886 567999999998887888888865 33334  456888 8999999999999999987 55

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.9e-20  Score=166.79  Aligned_cols=229  Identities=15%  Similarity=0.261  Sum_probs=164.4

Q ss_pred             eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--C
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--E  119 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~  119 (512)
                      +..++.||++-|+|+.|   +.||.+||+|+.|-.+.|||.-..+.            ....-.+|...|.++.|-|  +
T Consensus        42 lE~eL~GH~GCVN~LeW---n~dG~lL~SGSDD~r~ivWd~~~~Kl------------lhsI~TgHtaNIFsvKFvP~tn  106 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEW---NADGELLASGSDDTRLIVWDPFEYKL------------LHSISTGHTANIFSVKFVPYTN  106 (758)
T ss_pred             hhhhhccccceecceee---cCCCCEEeecCCcceEEeecchhcce------------eeeeecccccceeEEeeeccCC
Confidence            45688999999999999   99999999999999999999764322            1233369999999999999  6


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC----------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390          120 DTNILTASGDQTIKIWDAEKK----------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN  189 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  189 (512)
                      .+.+++|..|..|+++|+...          +....+..|...|..|+-.|.+++.+.+++.||+|+-+|++....-...
T Consensus       107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~  186 (758)
T KOG1310|consen  107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD  186 (758)
T ss_pred             CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence            678889999999999999842          3455667899999999999999999999999999999999864321110


Q ss_pred             cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC-------
Q 010390          190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP-------  262 (512)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~-------  262 (512)
                      ..                 ...........--...++..+|....+++.|+.|-..++||.+...........       
T Consensus       187 ~~-----------------~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~  249 (758)
T KOG1310|consen  187 ED-----------------CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPK  249 (758)
T ss_pred             cc-----------------ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCc
Confidence            00                 000000111122367899999999888888888999999996532221111110       


Q ss_pred             -----------Cccc-cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 010390          263 -----------HAES-SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYN  302 (512)
Q Consensus       263 -----------~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  302 (512)
                                 +... ..........++-+.|+|+|.-|++.-....|+++|
T Consensus       250 ~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfd  301 (758)
T KOG1310|consen  250 DCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFD  301 (758)
T ss_pred             ccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEe
Confidence                       0000 000111112367788999999888877777888888

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=2.6e-20  Score=161.20  Aligned_cols=295  Identities=15%  Similarity=0.269  Sum_probs=206.1

Q ss_pred             CCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCe---------eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE
Q 010390          108 QNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKK---------CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI  177 (512)
Q Consensus       108 ~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  177 (512)
                      ..+|.++.|.+++. .|+||+.|..|+||-++.+.         ....+..|...|+++.|+|++ .+|++|+.+|.|.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEE
Confidence            46899999999776 99999999999999886542         345677899999999999998 99999999999999


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                      |-........   .+       . ................+|...+..++|+|++..+++ ++.|..+++||+..+....
T Consensus        92 Wk~~~~~~~~---~d-------~-e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s-~s~dns~~l~Dv~~G~l~~  159 (434)
T KOG1009|consen   92 WKQGDVRIFD---AD-------T-EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS-GSVDNSVRLWDVHAGQLLA  159 (434)
T ss_pred             EEecCcCCcc---cc-------c-hhhhCccceEEEEEecccccchhhhhccCCCceeee-eeccceEEEEEeccceeEe
Confidence            9876411110   00       0 000111112233456679999999999999999887 5589999999999998776


Q ss_pred             cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC-------------------CCCceEeeeece
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL-------------------DKGPIQHFSGCR  318 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------------~~~~~~~~~~~~  318 (512)
                                 ....|...+..++|+|-++++++-+.|...+.+.+...                   +....+.+....
T Consensus       160 -----------~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT  228 (434)
T KOG1009|consen  160 -----------ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET  228 (434)
T ss_pred             -----------eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc
Confidence                       57788889999999999999999998886666654221                   111222233333


Q ss_pred             eceeEEEEEECCCCCEEEEecC----C-----CCEEEEecCCCCCCCceeccccCCeEEEEeCC----------------
Q 010390          319 IESFYVKSEICPNASHILSGSS----D-----GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP----------------  373 (512)
Q Consensus       319 ~~~~~~~~~~s~~~~~l~~g~~----d-----g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~----------------  373 (512)
                      ...+...++|+|+|.+|++...    +     +..++|+-...+.+...+.+-..++..+.|+|                
T Consensus       229 lksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~  308 (434)
T KOG1009|consen  229 LKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFV  308 (434)
T ss_pred             hhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccc
Confidence            4456677899999999987642    2     23466665555555555555566666666654                


Q ss_pred             --CCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCC
Q 010390          374 --NEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSS  451 (512)
Q Consensus       374 --~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  451 (512)
                        .+ ..++.++. ..|+|||.++-..+.                       ....-++..+. +++|++||..+++.|.
T Consensus       309 lpyr-lvfaiAt~-~svyvydtq~~~P~~-----------------------~v~nihy~~iT-Diaws~dg~~l~vSS~  362 (434)
T KOG1009|consen  309 LPYR-LVFAIATK-NSVYVYDTQTLEPLA-----------------------VVDNIHYSAIT-DIAWSDDGSVLLVSST  362 (434)
T ss_pred             cccc-eEEEEeec-ceEEEeccccccceE-----------------------EEeeeeeeeec-ceeecCCCcEEEEecc
Confidence              12 23444444 468899887654322                       23444566666 8888888877776543


Q ss_pred             C
Q 010390          452 D  452 (512)
Q Consensus       452 ~  452 (512)
                      .
T Consensus       363 D  363 (434)
T KOG1009|consen  363 D  363 (434)
T ss_pred             C
Confidence            3

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.7e-19  Score=168.90  Aligned_cols=314  Identities=15%  Similarity=0.172  Sum_probs=216.1

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      |.-.+.++++   ||+++++|+|..||.|.+|.--...         ......+.+.-|...|.+++|+++|.+|++|+.
T Consensus       204 Htf~~t~~~~---spn~~~~Aa~d~dGrI~vw~d~~~~---------~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~  271 (792)
T KOG1963|consen  204 HTFNITCVAL---SPNERYLAAGDSDGRILVWRDFGSS---------DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR  271 (792)
T ss_pred             hcccceeEEe---ccccceEEEeccCCcEEEEeccccc---------cccccceEEEecccccceeEEecCCceEeeccc
Confidence            6666778888   9999999999999999999643210         112235667889999999999999999999999


Q ss_pred             CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      .|.+.+|.+.+++ .+-+..-.++|..+.++|++ .+.+....|..|.+-...+.........-.....           
T Consensus       272 E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~-----------  338 (792)
T KOG1963|consen  272 EGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP-----------  338 (792)
T ss_pred             ceEEEEEeecCCC-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCc-----------
Confidence            9999999999998 55566677899999999998 7777778899999988766554433222110000           


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                           .......+-.+.++++|..+.++..| ..|.|.+||+-+...+................+.-++++++.+..|.+
T Consensus       339 -----~~k~~~~~l~t~~~idpr~~~~vln~-~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~  412 (792)
T KOG1963|consen  339 -----STKTRPQSLTTGVSIDPRTNSLVLNG-HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSW  412 (792)
T ss_pred             -----cccccccccceeEEEcCCCCceeecC-CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceE
Confidence                 00112234567788888666666655 799999999988776654332222111122244556888888888999


Q ss_pred             EEEEe--------cC--CeEEEEEcccCCCCce-EeeeeceeceeEEEEE-ECCCCC-EEEEecCCCCEEEEecCCCCC-
Q 010390          289 LTASC--------MD--HRIYLYNVLQLDKGPI-QHFSGCRIESFYVKSE-ICPNAS-HILSGSSDGNAYVWQVNKPQA-  354 (512)
Q Consensus       289 l~~~~--------~d--g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~-~s~~~~-~l~~g~~dg~i~iw~~~~~~~-  354 (512)
                      +++.-        .|  -.+++|-.......-. .+.-..++.......+ .++... ..++++.||.++||-+...+. 
T Consensus       413 maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~  492 (792)
T KOG1963|consen  413 MATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI  492 (792)
T ss_pred             EEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence            99874        22  3577887654333221 1111222222233333 333333 789999999999999844322 


Q ss_pred             --------CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          355 --------DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       355 --------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                              ....-.-|..++++++|+.||  -+++.+.|++|.+||..+
T Consensus       493 ~k~~s~W~c~~i~sy~k~~i~a~~fs~dG--slla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  493 YKKSSNWTCKAIGSYHKTPITALCFSQDG--SLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             CcCccceEEeeeeccccCcccchhhcCCC--cEEEEecCCEEEEecCCC
Confidence                    111222378899999999998  677778889999999998

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=1.1e-19  Score=150.46  Aligned_cols=257  Identities=13%  Similarity=0.257  Sum_probs=189.3

Q ss_pred             CcEEEEEEec---CCCEEEEEeC----CCcEEEEeCC--CCeeeecc-cCcCCCEEEEEeeCCC----CCeEEEEeCCCc
Q 010390          109 NAIFDLCWIK---EDTNILTASG----DQTIKIWDAE--KKKCTGAL-MGHTGSIKSLCSHPTN----SDILVSGSRDGS  174 (512)
Q Consensus       109 ~~V~~l~~s~---~~~~l~s~~~----dg~i~iwd~~--~~~~~~~~-~~h~~~v~~l~~~~~~----~~~l~s~~~dg~  174 (512)
                      -.++++.|+.   .+.+|+.|+.    .+.|.|-.+.  +++.+..- ..|.-+++.+.|.|+.    +.+||+++.  .
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~  122 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--F  122 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--e
Confidence            4678888884   3456777764    4567776553  34433221 3588899999999975    346666553  8


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      +|+|.+...+.......                  .....+...+..++++..|+.-...++.+++-|.+..|||++++.
T Consensus       123 LRlWri~~ee~~~~~~~------------------~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~  184 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQS------------------VLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV  184 (364)
T ss_pred             EEEEeccCcCCceehhh------------------hhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc
Confidence            99999875332211100                  001112334567999999999888777778899999999999873


Q ss_pred             c--eecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC
Q 010390          255 A--QITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN  331 (512)
Q Consensus       255 ~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  331 (512)
                      .  +.+          ++..|...|..++|..++. .+++.+.||.+|+||++..+...+ .++.........+++|+++
T Consensus       185 ~~~vkT----------QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI-IYE~p~~~~pLlRLswnkq  253 (364)
T KOG0290|consen  185 SGTVKT----------QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI-IYEDPSPSTPLLRLSWNKQ  253 (364)
T ss_pred             ccceee----------EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE-EecCCCCCCcceeeccCcC
Confidence            2  222          5788999999999998664 788999999999999988654333 2333333456778899875


Q ss_pred             -CCEEEEecCC-CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          332 -ASHILSGSSD-GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       332 -~~~l~~g~~d-g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                       -+++|+-..| ..|.|.|++....++..+.+|.+.|++++|.|.....|.|+|+|..+.+||+...
T Consensus       254 DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  254 DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence             4667765544 5699999999988889999999999999999999899999999999999999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=5.9e-20  Score=158.31  Aligned_cols=251  Identities=16%  Similarity=0.257  Sum_probs=186.1

Q ss_pred             eccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCC-------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC
Q 010390          102 SDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKK-------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG  173 (512)
Q Consensus       102 ~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  173 (512)
                      -...+|+++|..++|+| +...||+|+.|.+|.||++..+       +++..+.+|...|--+.|+|.-.+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            34579999999999999 6778899999999999998654       456778899999999999999889999999999


Q ss_pred             cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL  253 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~  253 (512)
                      +|.+||+.+++....                           + .|...|.++.|+.+|..+++++ .|..|+|||.+++
T Consensus       155 ~v~iWnv~tgeali~---------------------------l-~hpd~i~S~sfn~dGs~l~Ttc-kDKkvRv~dpr~~  205 (472)
T KOG0303|consen  155 TVSIWNVGTGEALIT---------------------------L-DHPDMVYSMSFNRDGSLLCTTC-KDKKVRVIDPRRG  205 (472)
T ss_pred             eEEEEeccCCceeee---------------------------c-CCCCeEEEEEeccCCceeeeec-ccceeEEEcCCCC
Confidence            999999998875442                           2 3888999999999999999866 8999999999999


Q ss_pred             cceecccCCCccccccccccc-cCeeEEEeCCCCCEEEEEe---cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC
Q 010390          254 KAQITQAWPHAESSSAKETRL-HGISSLSQDSNGVFLTASC---MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC  329 (512)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  329 (512)
                      +.+...           ..|. ..-..+.|-.+|.++.+|.   .+..+-+||..+.+...  .+......+.+.---|.
T Consensus       206 ~~v~e~-----------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~--~~~elDtSnGvl~PFyD  272 (472)
T KOG0303|consen  206 TVVSEG-----------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI--ALQELDTSNGVLLPFYD  272 (472)
T ss_pred             cEeeec-----------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcc--eeEEeccCCceEEeeec
Confidence            877642           2222 2345667778888555554   56789999987765442  22222223334445688


Q ss_pred             CCCCEE-EEecCCCCEEEEecCCCCCCCceecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          330 PNASHI-LSGSSDGNAYVWQVNKPQADPIKLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       330 ~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +|.+.+ ++|-.|+.|+.|.+......+..+..  ...+-..+.|.|.. .  +-.+..-..++|.+.+..
T Consensus       273 ~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR-G--l~Vs~cEI~rfyKl~~~~  340 (472)
T KOG0303|consen  273 PDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR-G--LDVSKCEIARFYKLHERK  340 (472)
T ss_pred             CCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc-c--ccchHHHHHHHHHhhcce
Confidence            888877 56667999999999887643333322  34567778888864 2  233333455666666553

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3.2e-19  Score=148.97  Aligned_cols=219  Identities=21%  Similarity=0.339  Sum_probs=149.0

Q ss_pred             ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEee-CCCCCeEEEEeCCCcEEEEe
Q 010390          105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSH-PTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~dg~i~vwd  179 (512)
                      .+|.+-|+++.|.+.|+.+|+|+.|++|+|||.+..    .+....+.|.+.|..+.|. |.-++.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            478999999999999999999999999999996543    5667788999999999995 55568999999999999997


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~  259 (512)
                      -......                                                        ..=+-|..++       
T Consensus        90 E~~~~~~--------------------------------------------------------~~~~~Wv~~t-------  106 (361)
T KOG2445|consen   90 EQEKSEE--------------------------------------------------------AHGRRWVRRT-------  106 (361)
T ss_pred             ecccccc--------------------------------------------------------cccceeEEEE-------
Confidence            5311100                                                        0000111110       


Q ss_pred             cCCCccccccccccccCeeEEEeCC--CCCEEEEEecCCeEEEEEcccCCCC----ceEee-----eeceeceeEEEEEE
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDS--NGVFLTASCMDHRIYLYNVLQLDKG----PIQHF-----SGCRIESFYVKSEI  328 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~-----~~~~~~~~~~~~~~  328 (512)
                               .+......|+.+.|.|  -|-.|++++.||.+|||+.-+....    ....+     ..........|+.|
T Consensus       107 ---------tl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW  177 (361)
T KOG2445|consen  107 ---------TLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW  177 (361)
T ss_pred             ---------EeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence                     1122223455666655  3456666666777777664321110    00001     11123344667888


Q ss_pred             CCC---CCEEEEecCC-----CCEEEEecCCCC---CCCceeccccCCeEEEEeCCCCC---CeEEEEeCCCcEEEEeCC
Q 010390          329 CPN---ASHILSGSSD-----GNAYVWQVNKPQ---ADPIKLKSHDGEVTAVNWCPNEA---GKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       329 s~~---~~~l~~g~~d-----g~i~iw~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~---~~l~s~~~dg~i~vwd~~  394 (512)
                      +|.   ..+||+|+.+     +.++||......   .....+.+|..+|++++|.|.-.   .+||+++.|| |+||++.
T Consensus       178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~  256 (361)
T KOG2445|consen  178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK  256 (361)
T ss_pred             ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence            874   5678888876     479999877654   22356779999999999999642   4799999999 9999998


Q ss_pred             CC
Q 010390          395 NS  396 (512)
Q Consensus       395 ~~  396 (512)
                      ..
T Consensus       257 ~~  258 (361)
T KOG2445|consen  257 VA  258 (361)
T ss_pred             ec
Confidence            53

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=6.4e-18  Score=164.47  Aligned_cols=295  Identities=24%  Similarity=0.437  Sum_probs=221.3

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcEEEEEE-ecCCC-
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCW-IKEDT-  121 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s~~~~-  121 (512)
                      ...+|...+.++.+   .+++..++.++.|+.+.+|+.....            ..+..+..+. ..+..+.+ ++++. 
T Consensus        60 ~~~~~~~~i~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (466)
T COG2319          60 LLRGHEDSITSIAF---SPDGELLLSGSSDGTIKLWDLDNGE------------KLIKSLEGLHDSSVSKLALSSPDGNS  124 (466)
T ss_pred             eeeeccceEEEEEE---CCCCcEEEEecCCCcEEEEEcCCCc------------eeEEEEeccCCCceeeEEEECCCcce
Confidence            45678999999999   9999999999999999999987653            1244444533 37777777 77777 


Q ss_pred             EEEEEeC-CCcEEEEeCCC-CeeeecccCcCCCEEEEEeeCCCCCeEEEEeC-CCcEEEEeCCCCCCCCCccccceeeec
Q 010390          122 NILTASG-DQTIKIWDAEK-KKCTGALMGHTGSIKSLCSHPTNSDILVSGSR-DGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       122 ~l~s~~~-dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      .++..+. |+.+.+|+... ......+..|...|..++|+|++ ..+++++. |+.+++|++......            
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------  191 (466)
T COG2319         125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPL------------  191 (466)
T ss_pred             EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceE------------
Confidence            5555444 99999999988 78888889999999999999988 67888875 999999999863221            


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                     .....|...+.+++|+|++..++++++.|+.|.+||...+.....          ....|.... 
T Consensus       192 ---------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~----------~~~~~~~~~-  245 (466)
T COG2319         192 ---------------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS----------TLSGHSDSV-  245 (466)
T ss_pred             ---------------EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee----------ecCCCCcce-
Confidence                           133447889999999999885555556899999998885544432          133333333 


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      ...|++++.++++++.|+.+++|++..... .......+  ...+.++.|+|++..+++++.|+.+.+|+..........
T Consensus       246 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  322 (466)
T COG2319         246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTLSGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL  322 (466)
T ss_pred             eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEEEEecC--CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence            238999998899999999999999976544 22233222  456778899999888888998988999988776553222


Q ss_pred             e-ccccCCeEEEEeCCCCCCeEEEE-eCCCcEEEEeCCCCc
Q 010390          359 L-KSHDGEVTAVNWCPNEAGKIVTS-SDDYTVRLWSLENSR  397 (512)
Q Consensus       359 ~-~~h~~~v~~v~~~~~~~~~l~s~-~~dg~i~vwd~~~~~  397 (512)
                      . ..|...+..+.|.+++ ..++.+ ..|+.+.+|++....
T Consensus       323 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         323 TLKGHEGPVSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             eecccCCceEEEEECCCC-CEEEEeecCCCcEEeeecCCCc
Confidence            2 4787789999994332 345544 688999999999887

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=6.5e-19  Score=169.84  Aligned_cols=296  Identities=20%  Similarity=0.222  Sum_probs=203.1

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecccc---CCCcEEEEEEec--CCCEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVA---HQNAIFDLCWIK--EDTNI  123 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~l~~s~--~~~~l  123 (512)
                      ...+...+.|   +|=...+++++..-.|+|||.+.+..             +..|..   -...|+.+.+-.  |..+|
T Consensus      1063 n~~~pk~~~~---hpf~p~i~~ad~r~~i~vwd~e~~~~-------------l~~F~n~~~~~t~Vs~l~liNe~D~aLl 1126 (1387)
T KOG1517|consen 1063 NNQPPKTLKF---HPFEPQIAAADDRERIRVWDWEKGRL-------------LNGFDNGAFPDTRVSDLELINEQDDALL 1126 (1387)
T ss_pred             CCCCCceeee---cCCCceeEEcCCcceEEEEecccCce-------------eccccCCCCCCCccceeeeecccchhhe
Confidence            3446778888   55566788888778999999987654             222322   245788888876  56788


Q ss_pred             EEEeCCCcEEEEeCC-C----CeeeecccC-------cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          124 LTASGDQTIKIWDAE-K----KKCTGALMG-------HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~-~----~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      ++|+.||.|+||+-- +    .+.+..+.+       ..+.=.-+.|.... .+|+++|.-..|+|||............
T Consensus      1127 Ltas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~ 1205 (1387)
T KOG1517|consen 1127 LTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPY 1205 (1387)
T ss_pred             eeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeeccc
Confidence            899999999999732 2    233322221       11111345677766 4555555578999999986654332211


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE  271 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  271 (512)
                                                +....++++.-+.....++++|..||.|++||.+.......        .....
T Consensus      1206 --------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~--------v~~~R 1251 (1387)
T KOG1517|consen 1206 --------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL--------VCVYR 1251 (1387)
T ss_pred             --------------------------CCCccceeecccccCCceEEEeecCCceEEeecccCCcccc--------ceeec
Confidence                                      23446777776665556666798999999999986543211        01344


Q ss_pred             ccccC--eeEEEeCCCCCE-EEEEecCCeEEEEEcccCCCCceEeeeece-eceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390          272 TRLHG--ISSLSQDSNGVF-LTASCMDHRIYLYNVLQLDKGPIQHFSGCR-IESFYVKSEICPNASHILSGSSDGNAYVW  347 (512)
Q Consensus       272 ~~~~~--i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  347 (512)
                      .|...  |..+.+.+.|.. |++|+.+|.|++||++............+. ..+..+++..+++...+|+|+. +.|+||
T Consensus      1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred             ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence            45444  899999887765 999999999999999874333333333322 1224778999999999999998 899999


Q ss_pred             ecCCCCCCCc-----eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          348 QVNKPQADPI-----KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       348 ~~~~~~~~~~-----~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ++...+....     .+....+.+.|++|+|.. -++|+|+.|..|.||.....+
T Consensus      1331 ~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1331 SLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR-LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ecChhhhcccccCcccccCcCCCcceeeecchh-HhhhhccCCceEEEeecCCcC
Confidence            9976543221     122235678999999998 789999999999999987654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.84  E-value=1.6e-17  Score=154.60  Aligned_cols=282  Identities=8%  Similarity=0.099  Sum_probs=179.5

Q ss_pred             EEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe-CCCcEEEEeCC-CCee--ee
Q 010390           69 AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS-GDQTIKIWDAE-KKKC--TG  144 (512)
Q Consensus        69 atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~  144 (512)
                      ++...++.|.+||+.+...          ...+..+. +.+....++++|++++|++++ .++.|.+|++. +++.  +.
T Consensus         6 ~~~~~~~~I~~~~~~~~g~----------l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~   74 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGA----------LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA   74 (330)
T ss_pred             EEcCCCCCEEEEEECCCCc----------eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee
Confidence            3346789999999963211          11233333 345677899999999987664 47889999986 3332  22


Q ss_pred             cccCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390          145 ALMGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI  223 (512)
Q Consensus       145 ~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (512)
                      ... ..+....++|+|++ ++|++++ .++.|.+|++.........                       .... .+....
T Consensus        75 ~~~-~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~-----------------------~~~~-~~~~~~  128 (330)
T PRK11028         75 ESP-LPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAP-----------------------IQII-EGLEGC  128 (330)
T ss_pred             eec-CCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCc-----------------------eeec-cCCCcc
Confidence            222 23356789999998 5555554 5889999999643221100                       0000 112346


Q ss_pred             EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec-CCeEEEEE
Q 010390          224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM-DHRIYLYN  302 (512)
Q Consensus       224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d  302 (512)
                      ..++++|+++.++++...++.|.+||+++........ ...    ...........++|+|+|++++++.. ++.|.+|+
T Consensus       129 ~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~----~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~  203 (330)
T PRK11028        129 HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAE----VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQ  203 (330)
T ss_pred             cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCc----eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence            6788999999998888788999999998633221100 000    00011234678999999999988876 89999999


Q ss_pred             cccCCC--CceEeeeece----eceeEEEEEECCCCCEEEEecC-CCCEEEEecCCCCCCCceecccc---CCeEEEEeC
Q 010390          303 VLQLDK--GPIQHFSGCR----IESFYVKSEICPNASHILSGSS-DGNAYVWQVNKPQADPIKLKSHD---GEVTAVNWC  372 (512)
Q Consensus       303 ~~~~~~--~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~h~---~~v~~v~~~  372 (512)
                      +.....  ..+..+....    .......+.++|++++++++.. ++.|.+|++...... ..+.++.   .....+.++
T Consensus       204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~  282 (330)
T PRK11028        204 LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNID  282 (330)
T ss_pred             EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEEC
Confidence            964211  1222222111    1122335889999999988754 688999999654321 1222221   245678999


Q ss_pred             CCCCCeEEEEe-CCCcEEEEeCC
Q 010390          373 PNEAGKIVTSS-DDYTVRLWSLE  394 (512)
Q Consensus       373 ~~~~~~l~s~~-~dg~i~vwd~~  394 (512)
                      |++ ++|+++. .+++|.+|+++
T Consensus       283 ~dg-~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        283 HSG-KYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCC-CEEEEEEccCCcEEEEEEc
Confidence            999 6666555 58999999875

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=5.2e-19  Score=146.40  Aligned_cols=234  Identities=23%  Similarity=0.336  Sum_probs=166.4

Q ss_pred             CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCC-------CcEEEEeCCCC----
Q 010390           73 EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGD-------QTIKIWDAEKK----  140 (512)
Q Consensus        73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~d-------g~i~iwd~~~~----  140 (512)
                      .|+.|.+.+++....          ......|..|.+.|..++-+| +.+.|+++..+       -.+.||.+...    
T Consensus        38 ~dNqVhll~~d~e~s----------~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S  107 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGS----------ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS  107 (370)
T ss_pred             CcceeEEEEecCccc----------hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence            356787777765432          122455677889999999999 45555665542       24779987543    


Q ss_pred             -----eeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccce
Q 010390          141 -----KCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVS  214 (512)
Q Consensus       141 -----~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (512)
                           +++..+. .+-+.|.|+.|.|++ ..+++.. |..|.+|++...........                     ..
T Consensus       108 ~~~tlE~v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~vaev~---------------------ss  164 (370)
T KOG1007|consen  108 NSSTLECVASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVAEVL---------------------SS  164 (370)
T ss_pred             ccchhhHhhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchheeec---------------------cc
Confidence                 2334443 355689999999977 6777665 78999999987655321100                     00


Q ss_pred             ecccccccEEEEEEee--cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE
Q 010390          215 RRKAASMSITSVLYLK--DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS  292 (512)
Q Consensus       215 ~~~~~~~~v~~~~~~~--~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  292 (512)
                      .-..+....++-+|+|  ++..+++++  |+++..||+++.+.....          ...|...                
T Consensus       165 ~s~e~~~~ftsg~WspHHdgnqv~tt~--d~tl~~~D~RT~~~~~sI----------~dAHgq~----------------  216 (370)
T KOG1007|consen  165 ESAEMRHSFTSGAWSPHHDGNQVATTS--DSTLQFWDLRTMKKNNSI----------EDAHGQR----------------  216 (370)
T ss_pred             ccccccceecccccCCCCccceEEEeC--CCcEEEEEccchhhhcch----------hhhhcce----------------
Confidence            1112455778888988  778888764  899999999987665432          2222222                


Q ss_pred             ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEe
Q 010390          293 CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNW  371 (512)
Q Consensus       293 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~  371 (512)
                                                    +..+.|+|+.+ +|+++++||.|+|||.+..+.++..+.+|...|++|.|
T Consensus       217 ------------------------------vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf  266 (370)
T KOG1007|consen  217 ------------------------------VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF  266 (370)
T ss_pred             ------------------------------eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence                                          33355556543 46889999999999999999888999999999999999


Q ss_pred             CCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          372 CPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       372 ~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +|...+++++||.|..|.+|...+-.
T Consensus       267 n~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  267 NPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             cCccceEEEecCCCceeEEEeccccc
Confidence            99887899999999999999876544

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=4e-19  Score=150.57  Aligned_cols=276  Identities=16%  Similarity=0.223  Sum_probs=182.2

Q ss_pred             eeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcEEEEEE
Q 010390           38 EIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCW  116 (512)
Q Consensus        38 ~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~  116 (512)
                      ..+.++-++++|++.++.|.|..-+ ....+.+|+.||.|++||++....           .....+.+|. .+..+++-
T Consensus        58 ~tg~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e-----------~a~~~~~~~~~~~f~~ld~  125 (376)
T KOG1188|consen   58 GTGQLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAE-----------SARISWTQQSGTPFICLDL  125 (376)
T ss_pred             cchhhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchh-----------hhheeccCCCCCcceEeec
Confidence            3356778899999999999996321 456899999999999999987543           2344555665 56677777


Q ss_pred             ecCCCEEEEEeC----CCcEEEEeCCCCee-eecc-cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390          117 IKEDTNILTASG----DQTIKIWDAEKKKC-TGAL-MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC  190 (512)
Q Consensus       117 s~~~~~l~s~~~----dg~i~iwd~~~~~~-~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  190 (512)
                      ...++.+++|..    |-.|.+||++..+. +..+ ..|.+.|+++.|+|.++++|++|+.||.|.++|+......    
T Consensus       126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee----  201 (376)
T KOG1188|consen  126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE----  201 (376)
T ss_pred             cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch----
Confidence            667777887754    67899999988765 5444 6799999999999999999999999999999999755211    


Q ss_pred             ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc-cc
Q 010390          191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS-SA  269 (512)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~  269 (512)
                                          ..+.....+...|.++.|+.++-.-+.+-+......+|+++.+........+..... ..
T Consensus       202 --------------------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r  261 (376)
T KOG1188|consen  202 --------------------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR  261 (376)
T ss_pred             --------------------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence                                111122345567999999988732233344789999999998885544332211000 00


Q ss_pred             ccccccCeeEEEeCCCCCEEEEEec-CCeEEEEEccc---CC-CCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390          270 KETRLHGISSLSQDSNGVFLTASCM-DHRIYLYNVLQ---LD-KGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA  344 (512)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~---~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  344 (512)
                      .......+-......++..++.++. -|...++-+..   +. ......+.++. ...+..+.|...+.++.+|+.||.+
T Consensus       262 ~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~-~eiVR~i~~~~~~~~l~TGGEDG~l  340 (376)
T KOG1188|consen  262 KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH-EEIVRDILFDVKNDVLYTGGEDGLL  340 (376)
T ss_pred             hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCc-HHHHHHHhhhcccceeeccCCCceE
Confidence            0001111111111224445555444 45555554432   11 12233334422 3345667788889999999999999


Q ss_pred             EEEecC
Q 010390          345 YVWQVN  350 (512)
Q Consensus       345 ~iw~~~  350 (512)
                      .+|...
T Consensus       341 ~~Wk~~  346 (376)
T KOG1188|consen  341 QAWKVE  346 (376)
T ss_pred             EEEecC
Confidence            999863

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=5.6e-19  Score=146.34  Aligned_cols=247  Identities=15%  Similarity=0.208  Sum_probs=178.4

Q ss_pred             CccCCcceEEEEEecCCC-----cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCC
Q 010390           48 GEETPPLAVSFCKTSKNS-----HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDT  121 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~-----~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~  121 (512)
                      .|.-|++.+.|   .|+.     ++|||++ | .+|||.+...........    .-....-..+..++++..|+. +-+
T Consensus        94 d~~YP~tK~~w---iPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~----~L~~~kns~~~aPlTSFDWne~dp~  164 (364)
T KOG0290|consen   94 DHPYPVTKLMW---IPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQS----VLNNNKNSEFCAPLTSFDWNEVDPN  164 (364)
T ss_pred             CCCCCccceEe---cCCccccCcchhhccc-C-eEEEEeccCcCCceehhh----hhccCcccccCCcccccccccCCcc
Confidence            58889999999   5554     4677765 3 799999874322111100    000111234667999999998 677


Q ss_pred             EEEEEeCCCcEEEEeCCCCee---eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          122 NILTASGDQTIKIWDAEKKKC---TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      +|.+++-|-+..|||++++..   ...+..|...|..|+|...+.+.|++++.||.||+||++..+.......       
T Consensus       165 ~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE-------  237 (364)
T KOG0290|consen  165 LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE-------  237 (364)
T ss_pred             eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec-------
Confidence            888999999999999998733   5567789999999999998888999999999999999997653322111       


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                       -.....+...++|+++.. ++++.......|.|.|++.......          .+..|...|
T Consensus       238 -----------------~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva----------~L~~H~a~V  290 (364)
T KOG0290|consen  238 -----------------DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA----------RLRNHQASV  290 (364)
T ss_pred             -----------------CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee----------hhhcCcccc
Confidence                             111145788899988655 4555555567899999998766554          688999999


Q ss_pred             eEEEeCCC-CCEEEEEecCCeEEEEEcccCCCC----ceEeeeeceeceeEEEEEECC-CCCEEEEecC
Q 010390          278 SSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKG----PIQHFSGCRIESFYVKSEICP-NASHILSGSS  340 (512)
Q Consensus       278 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~  340 (512)
                      +.++|.|. ...|++++.|..+.+||+......    ++..+.   ....+..+.|++ .+.+|+.+..
T Consensus       291 NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  291 NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             cceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec
Confidence            99999995 458999999999999999765431    222222   234577799996 4677877664

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.83  E-value=5.5e-20  Score=172.82  Aligned_cols=288  Identities=18%  Similarity=0.293  Sum_probs=210.7

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      ..+.||.+.|+|+.|   ...|.++++|+.|..|+||..++...             +....||.+.|+.++.+.+..++
T Consensus       184 krLlgH~naVyca~f---Drtg~~Iitgsdd~lvKiwS~et~~~-------------lAs~rGhs~ditdlavs~~n~~i  247 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIF---DRTGRYIITGSDDRLVKIWSMETARC-------------LASCRGHSGDITDLAVSSNNTMI  247 (1113)
T ss_pred             HHHHhhhhheeeeee---ccccceEeecCccceeeeeeccchhh-------------hccCCCCccccchhccchhhhhh
Confidence            457899999999999   88999999999999999999877643             78889999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      ++++.|..|++|.+.++.++..+.+|++.|++|+|+|.-     +.+.||++++||.+-.-.......            
T Consensus       248 aaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp------------  310 (1113)
T KOG0644|consen  248 AAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRP------------  310 (1113)
T ss_pred             hhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCC------------
Confidence            999999999999999999999999999999999999943     778899999999881111110000            


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                                 ........+.++.|..++..+++ |+.|+.-..|.+.......                 ..+.-+..+
T Consensus       311 -----------~~~~~~~~~~s~~~~~~~~~f~T-gs~d~ea~n~e~~~l~~~~-----------------~~lif~t~s  361 (1113)
T KOG0644|consen  311 -----------LKFTEKDLVDSILFENNGDRFLT-GSRDGEARNHEFEQLAWRS-----------------NLLIFVTRS  361 (1113)
T ss_pred             -----------CCcccccceeeeecccccccccc-ccCCcccccchhhHhhhhc-----------------cceEEEecc
Confidence                       00011235666667667766666 6678877777665322111                 111111111


Q ss_pred             CC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecCCCCEEEEecCCCCCCCceecc
Q 010390          284 SN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSSDGNAYVWQVNKPQADPIKLKS  361 (512)
Q Consensus       284 ~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~  361 (512)
                      .+ ..+.+++-.+-.+.+|++..+.  ....+.++...  +..+.++|-+..+ .+++.||...|||+-.+........+
T Consensus       362 sd~~~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~--~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g  437 (1113)
T KOG0644|consen  362 SDLSSIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDE--VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG  437 (1113)
T ss_pred             ccccccceeeeeeeEeeeeecccch--hhhhhcccccc--eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc
Confidence            12 1355666677889999986643  33444455433  4447888866555 68899999999999888765555566


Q ss_pred             ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          362 HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       362 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      | +.+...+|+++| ..++....-|.++|.....++..
T Consensus       438 h-~kl~d~kFSqdg-ts~~lsd~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  438 H-GKLVDGKFSQDG-TSIALSDDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             c-ceeeccccCCCC-ceEecCCCCCceEEeccCCCccc
Confidence            5 566777899999 77777777799999987666543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.83  E-value=9.8e-19  Score=147.43  Aligned_cols=304  Identities=14%  Similarity=0.229  Sum_probs=201.2

Q ss_pred             EEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEe
Q 010390           58 FCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWD  136 (512)
Q Consensus        58 ~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd  136 (512)
                      +|+|||+|+++|+...- .+.|-|.++-+.              ..+..--..|.-+.|..|..+++ ....|+.|.+|+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--------------~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvws   77 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--------------HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWS   77 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhH--------------HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEE
Confidence            56779999999999754 788888766432              12222246788899999888777 456688999999


Q ss_pred             CCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc------
Q 010390          137 AEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS------  210 (512)
Q Consensus       137 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  210 (512)
                      +...+-...+.....++.+++|+|+|..+|.+...|-.|.+|.+.+.................+.+.+......      
T Consensus        78 l~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCk  157 (447)
T KOG4497|consen   78 LVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCK  157 (447)
T ss_pred             eecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHH
Confidence            99999888998888899999999999888888889999999999887654433333322223333322221111      


Q ss_pred             -----------ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          211 -----------KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       211 -----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                 ..+..+....-..+.+.|+|||..+++          ||.--.-.+.            ......++..
T Consensus       158 dyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV----------wd~~Leykv~------------aYe~~lG~k~  215 (447)
T KOG4497|consen  158 DYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV----------WDNVLEYKVY------------AYERGLGLKF  215 (447)
T ss_pred             HHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE----------ecchhhheee------------eeeeccceeE
Confidence                       111223334455677888888776665          3221111100            1111245888


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccC-----------------------------------------------C-C---
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQL-----------------------------------------------D-K---  308 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------------------------------------~-~---  308 (512)
                      ++|+|.+++|++|+.|+.+++.+--+.                                               . .   
T Consensus       216 v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~  295 (447)
T KOG4497|consen  216 VEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI  295 (447)
T ss_pred             EEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence            999999999999999999998771000                                               0 0   


Q ss_pred             -----Cc--eEeee----eceeceeEEEEEECCCCCEEEEecCC--CCEEEEecCCCCCCCceeccccCCeEEEEeCCCC
Q 010390          309 -----GP--IQHFS----GCRIESFYVKSEICPNASHILSGSSD--GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE  375 (512)
Q Consensus       309 -----~~--~~~~~----~~~~~~~~~~~~~s~~~~~l~~g~~d--g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~  375 (512)
                           .+  +..+.    .......+..++|++|..++++-.+.  +.+-+||++..+.. ..+ ....+|....|.|..
T Consensus       296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~-avL-iQk~piraf~WdP~~  373 (447)
T KOG4497|consen  296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH-AVL-IQKHPIRAFEWDPGR  373 (447)
T ss_pred             hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh-hhh-hhccceeEEEeCCCC
Confidence                 00  00000    00011234468999999999887653  56999999886653 222 245689999999998


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          376 AGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       376 ~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      + .|+.+.....+++|......++..
T Consensus       374 p-rL~vctg~srLY~W~psg~~~V~v  398 (447)
T KOG4497|consen  374 P-RLVVCTGKSRLYFWAPSGPRVVGV  398 (447)
T ss_pred             c-eEEEEcCCceEEEEcCCCceEEec
Confidence            4 566665566799999988666665

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.83  E-value=2e-18  Score=163.64  Aligned_cols=261  Identities=15%  Similarity=0.223  Sum_probs=190.0

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE--EEEEe
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN--ILTAS  127 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~--l~s~~  127 (512)
                      ...|.++.|++|+|  +++|.|..+|.|.+||+.......       ....-.....|..+|+.+.|..+..-  +++++
T Consensus       242 ~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~-------~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s  312 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTP-------PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS  312 (555)
T ss_pred             CCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCC-------CcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence            45688999987755  789999999999999998764310       01112233578999999999885444  99999


Q ss_pred             CCCcEEEEeCCCCeee------eccc------CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          128 GDQTIKIWDAEKKKCT------GALM------GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~------~~~~------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      .||.|..|+++.-...      ....      .-...+++++|.+..++.|+.|+.+|.|.--+-........       
T Consensus       313 sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-------  385 (555)
T KOG1587|consen  313 SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-------  385 (555)
T ss_pred             cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-------
Confidence            9999999987653221      1111      12246899999999999999999999987743332221110       


Q ss_pred             eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                  ...+.......|.+.|+++.++|-+..++.+++ |-.++||..........          ....+..
T Consensus       386 ------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~----------~~~~~~~  442 (555)
T KOG1587|consen  386 ------------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLL----------SLDSSPD  442 (555)
T ss_pred             ------------ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcch----------hhhhccc
Confidence                        011223355678899999999999888887775 99999999873322222          3445556


Q ss_pred             CeeEEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390          276 GISSLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK  351 (512)
Q Consensus       276 ~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~  351 (512)
                      .+++++|+|.. ..++++..||.|.+||+......++....-.  ......+.|+++|+.|++|...|.+++|++..
T Consensus       443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            69999999975 4777888899999999987766666555433  34456688999999999999999999999964

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.82  E-value=2.7e-20  Score=174.83  Aligned_cols=254  Identities=20%  Similarity=0.313  Sum_probs=199.9

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      +.++.+.+|.++|+|+.|...|.++++|+.|..++||..+++.+.....||.+.|+.++.+..+ .++++++.|..|++|
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEEE
Confidence            4467788999999999999999999999999999999999999999999999999999998876 899999999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      .+..+..+                           ..+.+|.+.|++++|+|-.     +.+.||++++||.+-. ....
T Consensus       260 rl~~~~pv---------------------------svLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~-~~~y  306 (1113)
T KOG0644|consen  260 RLPDGAPV---------------------------SVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLE-PRIY  306 (1113)
T ss_pred             ecCCCchH---------------------------HHHhccccceeeeccCccc-----cCCCCCceEecccccc-cccc
Confidence            99876543                           3667899999999999975     3558999999999821 1111


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-CCEEEE
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-ASHILS  337 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~  337 (512)
                      ...|      .......-+.++.+..++..+++++.|+.-..|.+...........       +   +..+.+ ..+.++
T Consensus       307 ~prp------~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~li-------f---~t~ssd~~~~~~~  370 (1113)
T KOG0644|consen  307 VPRP------LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLI-------F---VTRSSDLSSIVVT  370 (1113)
T ss_pred             CCCC------CCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceE-------E---Eecccccccccee
Confidence            1111      1122224577788888899999999999988888644222111110       0   111112 245566


Q ss_pred             ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      +-.+..+++|++.++.. ...+.+|...+..+.++|-++....+++.||...|||+-.|..++...
T Consensus       371 ar~~~~~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  371 ARNDHRLCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             eeeeeEeeeeecccchh-hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence            77788899999999876 467889999999999999998888999999999999999988777644

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.82  E-value=5.3e-18  Score=166.17  Aligned_cols=312  Identities=13%  Similarity=0.173  Sum_probs=211.2

Q ss_pred             eeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390           37 TEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW  116 (512)
Q Consensus        37 ~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  116 (512)
                      ...|.++.+++.|...|..++..  ++++.++++|+.||+|++||........      ...+-..++..-.+.+.++..
T Consensus      1035 ~p~G~lVAhL~Ehs~~v~k~a~s--~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVS--SEHTSLFVSGSDDGTVKVWNLRKLEGEG------GSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred             CccceEeehhhhccccccceeec--CCCCceEEEecCCceEEEeeehhhhcCc------ceeeeeEEEeccCCceEEEEe
Confidence            56789999999999999977773  5666999999999999999987543211      111223334445678999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCC-------eeeecccCcC-CCE-EEEEeeCCCCC-eEEEEeCCCcEEEEeCCCCCCC
Q 010390          117 IKEDTNILTASGDQTIKIWDAEKK-------KCTGALMGHT-GSI-KSLCSHPTNSD-ILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       117 s~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~h~-~~v-~~l~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      .+.++.+|.++.||.|++.+++..       .+.+....+. +.+ ..-+|...... .++.+...+.|..||++.....
T Consensus      1107 ~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1107 CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred             ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence            999999999999999999998762       1122222222 233 33334333323 7888888899999999865543


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                      ...                         ......+.|++++.+|.+..+++ |+..|.+.+||++-...+..-..     
T Consensus      1187 w~l-------------------------k~~~~hG~vTSi~idp~~~Wlvi-Gts~G~l~lWDLRF~~~i~sw~~----- 1235 (1431)
T KOG1240|consen 1187 WRL-------------------------KNQLRHGLVTSIVIDPWCNWLVI-GTSRGQLVLWDLRFRVPILSWEH----- 1235 (1431)
T ss_pred             Hhh-------------------------hcCccccceeEEEecCCceEEEE-ecCCceEEEEEeecCceeecccC-----
Confidence            322                         22344678999999999997776 77899999999997665544322     


Q ss_pred             cccccccccCeeEEEeCCC---CCEEEEEe--cCCeEEEEEcccCCCCceEeee-ec--------------eeceeEEEE
Q 010390          267 SSAKETRLHGISSLSQDSN---GVFLTASC--MDHRIYLYNVLQLDKGPIQHFS-GC--------------RIESFYVKS  326 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~---~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~-~~--------------~~~~~~~~~  326 (512)
                           .+..+++.+..+|-   ....++++  ..+.|.+|++.++....+.... +.              +........
T Consensus      1236 -----P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~ 1310 (1431)
T KOG1240|consen 1236 -----PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISC 1310 (1431)
T ss_pred             -----cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceee
Confidence                 22255777776653   34555444  5688999999876444333222 10              111112223


Q ss_pred             EECCCCCEEEEecCCCCEEEEecCCCCCC----------------------------C-------------------c--
Q 010390          327 EICPNASHILSGSSDGNAYVWQVNKPQAD----------------------------P-------------------I--  357 (512)
Q Consensus       327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~----------------------------~-------------------~--  357 (512)
                      .+..-+.++.+|+.|..|+.||.......                            .                   .  
T Consensus      1311 ~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~ 1390 (1431)
T KOG1240|consen 1311 GVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKL 1390 (1431)
T ss_pred             ecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhccccccc
Confidence            44445678899999999999997642211                            0                   0  


Q ss_pred             ------eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          358 ------KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       358 ------~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                            .-..|..+|+++++......+|++++.||.|+||.
T Consensus      1391 ~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1391 RPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             ccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                  01247788999998776656999999999999994

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=8.6e-17  Score=156.54  Aligned_cols=293  Identities=27%  Similarity=0.470  Sum_probs=220.9

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeC-CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDE-DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      .......+|...|.+++|   +|++.++++++. |+.+++|+.....             .+..+.+|...|.+++|+|+
T Consensus       146 ~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~  209 (466)
T COG2319         146 KLIRTLEGHSESVTSLAF---SPDGKLLASGSSLDGTIKLWDLRTGK-------------PLSTLAGHTDPVSSLAFSPD  209 (466)
T ss_pred             eEEEEEecCcccEEEEEE---CCCCCEEEecCCCCCceEEEEcCCCc-------------eEEeeccCCCceEEEEEcCC
Confidence            555677889999999999   999999999885 9999999997632             26667779999999999999


Q ss_pred             CC-EEEEEeCCCcEEEEeCCCCeeee-cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          120 DT-NILTASGDQTIKIWDAEKKKCTG-ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       120 ~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      +. .+++++.|+.|++||...+.... .+.+|...+ ...|++++ ..+++++.|+.+++|+.......           
T Consensus       210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~-----------  276 (466)
T COG2319         210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL-----------  276 (466)
T ss_pred             cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE-----------
Confidence            98 55565899999999988888777 688888775 44899988 88889999999999999865430           


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                     ......|...+.++.|.|++..+++ ++.|+.+.+||..+........         ...|...+
T Consensus       277 ---------------~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~  331 (466)
T COG2319         277 ---------------LRTLSGHSSSVLSVAFSPDGKLLAS-GSSDGTVRLWDLETGKLLSSLT---------LKGHEGPV  331 (466)
T ss_pred             ---------------EEEEecCCccEEEEEECCCCCEEEE-eeCCCcEEEEEcCCCceEEEee---------ecccCCce
Confidence                           0011355778999999998888888 6677889999888776554321         12444468


Q ss_pred             eEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCCCCCC
Q 010390          278 SSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS-GSSDGNAYVWQVNKPQAD  355 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~~~~~  355 (512)
                      ..+.+.+++..++.+ ..|+.+.+|++....  ........   ..+..+.+++ ...++. +..++.+.+|+.......
T Consensus       332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  405 (466)
T COG2319         332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--PLKTLEGH---SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL  405 (466)
T ss_pred             EEEEECCCCCEEEEeecCCCcEEeeecCCCc--eeEEecCC---ceEEEEEECC-CCCEEEEecCCCceEEEecccCeee
Confidence            888884333555555 678899999986644  22222111   1156678888 544444 688999999999877653


Q ss_pred             CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      . ....+...+....+.+++ ..+++++.++.+++|+...
T Consensus       406 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         406 R-NLDGHTSRVTSLDFSPDG-KSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             e-eccCCCCcEEEEEECCCC-cEEEEecCCCcEEEEeccC
Confidence            2 222222789999999998 7899999999999999988

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.1e-17  Score=135.13  Aligned_cols=289  Identities=13%  Similarity=0.153  Sum_probs=192.1

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      ..|++-++   +|.+++|++|..+|.|.+..++.......   ......++...++|.++|+.++|.  ..+|++|+ ||
T Consensus        11 ~tvf~qa~---sp~~~~l~agn~~G~iav~sl~sl~s~sa---~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG   81 (325)
T KOG0649|consen   11 NTVFAQAI---SPSKQYLFAGNLFGDIAVLSLKSLDSGSA---EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DG   81 (325)
T ss_pred             HHHHHHhh---CCcceEEEEecCCCeEEEEEehhhhcccc---CCCCCcceeeccccCCCeeeeeee--hhheeecc-Cc
Confidence            34555566   99999999999999999999875422111   123345566779999999999998  45777775 59


Q ss_pred             cEEEEeCCCCee------eecc--cCcC-----CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          131 TIKIWDAEKKKC------TGAL--MGHT-----GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       131 ~i~iwd~~~~~~------~~~~--~~h~-----~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      .|+=|.++....      +...  ..|.     -.|+++...|.. +-++.++.|+.++.||+++++.            
T Consensus        82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i------------  148 (325)
T KOG0649|consen   82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI------------  148 (325)
T ss_pred             eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEE------------
Confidence            999998764322      1111  1122     368999999987 4455555899999999997653            


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc-ccccC
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE-TRLHG  276 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~  276 (512)
                                     .+.+++|...+.++.--.....+++ |++||++++||+++.+.......-....  ... .-...
T Consensus       149 ---------------~r~~rGHtDYvH~vv~R~~~~qils-G~EDGtvRvWd~kt~k~v~~ie~yk~~~--~lRp~~g~w  210 (325)
T KOG0649|consen  149 ---------------QREYRGHTDYVHSVVGRNANGQILS-GAEDGTVRVWDTKTQKHVSMIEPYKNPN--LLRPDWGKW  210 (325)
T ss_pred             ---------------EEEEcCCcceeeeeeecccCcceee-cCCCccEEEEeccccceeEEeccccChh--hcCcccCce
Confidence                           3477899999999988555556665 7799999999999998876543211111  111 12334


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                      |.+++.+  ..+|++|+ .-.+.+|.++..+...+..+.++..     .+.|.  .+.+++++..+.|.-|.+...-.  
T Consensus       211 igala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~-----~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~--  278 (325)
T KOG0649|consen  211 IGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVH-----LVDFV--DDCVLIGGEGNHVQSYTLNGVLQ--  278 (325)
T ss_pred             eEEEecc--CceEEecC-CCceeEEeccCCCceEEEeccccee-----Eeeee--cceEEEeccccceeeeeeccEEE--
Confidence            6666665  45777764 5689999999877777776666533     24443  35677888778899998764322  


Q ss_pred             ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEE
Q 010390          357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW  391 (512)
Q Consensus       357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw  391 (512)
                      ..........++..|+..--++|-.++..+.+.|.
T Consensus       279 a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  279 ANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             EeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            12222233455565654332455556666667665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=9.4e-19  Score=160.76  Aligned_cols=263  Identities=15%  Similarity=0.203  Sum_probs=200.2

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390          110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN  189 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  189 (512)
                      .|+.++|-|||..|+.+.. ..+.|||.++|..+.++++|++.|+|++|+.+| ..+++|+.|..|.+|+..-...    
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~----   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGI----   87 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccce----
Confidence            8999999999999998754 459999999999999999999999999999998 9999999999999998653322    


Q ss_pred             cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390          190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA  269 (512)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  269 (512)
                                               ....|...|.|+.|+|-...+++++-  ...-+|........             
T Consensus        88 -------------------------LkYSH~D~IQCMsFNP~~h~LasCsL--sdFglWS~~qK~V~-------------  127 (1081)
T KOG1538|consen   88 -------------------------LKYSHNDAIQCMSFNPITHQLASCSL--SDFGLWSPEQKSVS-------------  127 (1081)
T ss_pred             -------------------------eeeccCCeeeEeecCchHHHhhhcch--hhccccChhhhhHH-------------
Confidence                                     22367889999999999999988653  44778877654432             


Q ss_pred             ccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-----CCEEEEecCCCCE
Q 010390          270 KETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-----ASHILSGSSDGNA  344 (512)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~~l~~g~~dg~i  344 (512)
                      .......+.+.+|..||++|+.|-.+|+|.+-+-...+.  ...-.....+..+.+++|+|.     ...+++.....++
T Consensus       128 K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek--~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL  205 (1081)
T KOG1538|consen  128 KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK--VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL  205 (1081)
T ss_pred             hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc--eEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence            222334588999999999999999999999987543222  222222233567889999996     3578888888899


Q ss_pred             EEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhccccc
Q 010390          345 YVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFM  424 (512)
Q Consensus       345 ~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (512)
                      .+|.+......  .-..-.-...|+.+.++| .+++.||.|+.++++.-+.-.+ .+  ......++|.+...|....++
T Consensus       206 SFy~LsG~~Ig--k~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~GvrL-GT--vg~~D~WIWtV~~~PNsQ~v~  279 (1081)
T KOG1538|consen  206 SFYQLSGKQIG--KDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDGVRL-GT--VGEQDSWIWTVQAKPNSQYVV  279 (1081)
T ss_pred             EEEEecceeec--ccccCCCCchhheeccCC-cEEEEccCCCceEEEeecCeEE-ee--ccccceeEEEEEEccCCceEE
Confidence            99988654321  122223346689999999 8999999999999997654332 22  233678899988888777665


Q ss_pred             CC
Q 010390          425 NG  426 (512)
Q Consensus       425 ~~  426 (512)
                      .|
T Consensus       280 ~G  281 (1081)
T KOG1538|consen  280 VG  281 (1081)
T ss_pred             EE
Confidence            44

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=6.9e-19  Score=160.70  Aligned_cols=265  Identities=17%  Similarity=0.236  Sum_probs=186.9

Q ss_pred             CCcEEEE--eeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCC
Q 010390           64 NSHIFAV--SDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKK  140 (512)
Q Consensus        64 ~~~~lat--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~  140 (512)
                      +..++|+  .+.-|.|-||+++.....        ....+-. ......|+.+.|.| |.+.|+.++.||.|++|.+..+
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrL--------PDgv~p~-l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~  660 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRL--------PDGVMPG-LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN  660 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCC--------Ccccccc-cccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence            4556666  466789999999754211        0011111 12456899999999 8889999999999999998764


Q ss_pred             -------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccc
Q 010390          141 -------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRV  213 (512)
Q Consensus       141 -------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (512)
                             .+...+..|...|+++.|+|--.+.|++++.|-+|++||+.+.....                          
T Consensus       661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~--------------------------  714 (1012)
T KOG1445|consen  661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS--------------------------  714 (1012)
T ss_pred             CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh--------------------------
Confidence                   23456788999999999999888899999999999999998765433                          


Q ss_pred             eecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe
Q 010390          214 SRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC  293 (512)
Q Consensus       214 ~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  293 (512)
                       ++.+|.+.|.+++|+|+|+.+++.| .||+|++|+.++..........         .....--.+.|.-+|+++++.+
T Consensus       715 -~l~gHtdqIf~~AWSpdGr~~AtVc-KDg~~rVy~Prs~e~pv~Eg~g---------pvgtRgARi~wacdgr~viv~G  783 (1012)
T KOG1445|consen  715 -RLVGHTDQIFGIAWSPDGRRIATVC-KDGTLRVYEPRSREQPVYEGKG---------PVGTRGARILWACDGRIVIVVG  783 (1012)
T ss_pred             -eeccCcCceeEEEECCCCcceeeee-cCceEEEeCCCCCCCccccCCC---------CccCcceeEEEEecCcEEEEec
Confidence             6678999999999999999999987 7999999999987655432111         1112234677888999999887


Q ss_pred             cC----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCCCCCceeccccCC--e
Q 010390          294 MD----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQADPIKLKSHDGE--V  366 (512)
Q Consensus       294 ~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~--v  366 (512)
                      .|    ..|.+||.......++....-..... ..--.+.+|.+ ++++|-.|..|.+|.+-.....+..+..|..+  -
T Consensus       784 fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~h  862 (1012)
T KOG1445|consen  784 FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGH  862 (1012)
T ss_pred             ccccchhhhhhhhhhhccCCcceeeeecccCc-cccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcc
Confidence            66    57899998776655554432211111 11124556644 56788889999999987665543334333332  2


Q ss_pred             EEEEeCCCC
Q 010390          367 TAVNWCPNE  375 (512)
Q Consensus       367 ~~v~~~~~~  375 (512)
                      ..++|.+..
T Consensus       863 qGl~fl~K~  871 (1012)
T KOG1445|consen  863 QGLAFLQKL  871 (1012)
T ss_pred             cceeeeccc
Confidence            346666544

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.81  E-value=8e-18  Score=159.65  Aligned_cols=249  Identities=17%  Similarity=0.273  Sum_probs=176.5

Q ss_pred             CcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          130 QTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       130 g~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      +.+.||++... .+...+. -...|.++.|+|..+++++.|+.+|.|.+||++........                   
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s-------------------  281 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS-------------------  281 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------------
Confidence            47999999877 3333343 55789999999999999999999999999999977653211                   


Q ss_pred             ccccceecccccccEEEEEEeecCCE--EEEEeecCCeEEEEeccCccceecccCCCccc-cccccccccCeeEEEeCC-
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVS--IATASAVNSIVKFWDTRNLKAQITQAWPHAES-SSAKETRLHGISSLSQDS-  284 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-  284 (512)
                        ........|..++..+.|..+...  +++++ .||.|..|+++............... .........+++++.|.+ 
T Consensus       282 --~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s-sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~  358 (555)
T KOG1587|consen  282 --GLSALEVSHSEPVTAVVWLQNEHNTEFFSLS-SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT  358 (555)
T ss_pred             --ccccccccCCcCeEEEEEeccCCCCceEEEe-cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC
Confidence              111133468889999999775554  77755 69999999988765533322211110 001223345689999987 


Q ss_pred             CCCEEEEEecCCeEEEEEcccCCCCceEeeeec----eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390          285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC----RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK  360 (512)
Q Consensus       285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~  360 (512)
                      +-..+++|+.+|.|..-+-..........+.++    .+...+..+.++|-+..++..+.|.+++||.......++..+.
T Consensus       359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~  438 (555)
T KOG1587|consen  359 DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD  438 (555)
T ss_pred             CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh
Confidence            456789999999998855433333321122221    2345678889999876655444499999999885555567777


Q ss_pred             cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       361 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      .+...|++++|||..+..++++..||.|.+||+.......+
T Consensus       439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv  479 (555)
T KOG1587|consen  439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV  479 (555)
T ss_pred             hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence            78888999999999989999999999999999987765544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=2.7e-18  Score=148.00  Aligned_cols=258  Identities=16%  Similarity=0.220  Sum_probs=188.4

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC------Ceeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCC
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK------KKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDG  173 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg  173 (512)
                      .+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++.      .+++.... .|...|.|++|...+ ..+++|+.++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~  127 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWG  127 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCcc
Confidence            345678999999999999999999999999999999853      35555443 355899999999866 8999999999


Q ss_pred             cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL  253 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~  253 (512)
                      +|...|+++.+.+.....                         ....+.|..+..+|..+.++++. .++.|.+||.+..
T Consensus       128 ~VI~HDiEt~qsi~V~~~-------------------------~~~~~~VY~m~~~P~DN~~~~~t-~~~~V~~~D~Rd~  181 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANE-------------------------NNNRGDVYHMDQHPTDNTLIVVT-RAKLVSFIDNRDR  181 (609)
T ss_pred             eeEeeecccceeeeeecc-------------------------cCcccceeecccCCCCceEEEEe-cCceEEEEeccCC
Confidence            999999998765443211                         12234899999999988877754 8999999999976


Q ss_pred             cceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEe--eeecee-ceeEEEEEEC
Q 010390          254 KAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQH--FSGCRI-ESFYVKSEIC  329 (512)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~-~~~~~~~~~s  329 (512)
                      ........        ..........+.|+|.. .+|++.+..+-+-+||++.......+.  +.+.+. ....+.+.|+
T Consensus       182 ~~~~~~~~--------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~  253 (609)
T KOG4227|consen  182 QNPISLVL--------PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS  253 (609)
T ss_pred             CCCCceee--------ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence            53332221        22233457788899854 577788888999999987644322211  111111 1224567899


Q ss_pred             CCCCEEEEecCCCCEEEEecCCCCCCCceecccc-------CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          330 PNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD-------GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       330 ~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~-------~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      |+|..+++--....-.+||+-+..+.+..+. |.       ..+.+++|..|  +.+++|+++-.|++|.+...
T Consensus       254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             CCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCC
Confidence            9999998877777778889887666433332 22       25778888876  46999999999999998653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.81  E-value=1.9e-17  Score=139.25  Aligned_cols=220  Identities=13%  Similarity=0.120  Sum_probs=166.2

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      ...||+|-+|   ++|+..+|++..+..|.||...+...          -+...+++.|...|+.++|+|..+.|++|+.
T Consensus         9 ~~~pitchAw---n~drt~iAv~~~~~evhiy~~~~~~~----------w~~~htls~Hd~~vtgvdWap~snrIvtcs~   75 (361)
T KOG1523|consen    9 LLEPITCHAW---NSDRTQIAVSPNNHEVHIYSMLGADL----------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH   75 (361)
T ss_pred             ccCceeeeee---cCCCceEEeccCCceEEEEEecCCCC----------ceeceehhhhCcceeEEeecCCCCceeEccC
Confidence            3567777777   99999999999999999999876531          2457889999999999999999999999999


Q ss_pred             CCcEEEEeC-CCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          129 DQTIKIWDA-EKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       129 dg~i~iwd~-~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      |..-+||.. ..+  ++.-.+..++..++++.|+|.+ +.|++|+.-..|.||-++..+.--..                
T Consensus        76 drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVs----------------  138 (361)
T KOG1523|consen   76 DRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVS----------------  138 (361)
T ss_pred             CCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehh----------------
Confidence            999999998 333  3445556688999999999988 99999999999999987754321100                


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee-------cccCCCccccccccccccCee
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI-------TQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~  278 (512)
                             ....+.+...|+++.|+|++-.+++ |+.|+..+++..--.....       -...|......+.....+.+.
T Consensus       139 -------KhikkPirStv~sldWhpnnVLlaa-Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh  210 (361)
T KOG1523|consen  139 -------KHIKKPIRSTVTSLDWHPNNVLLAA-GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH  210 (361)
T ss_pred             -------hhhCCccccceeeeeccCCcceecc-cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee
Confidence                   0122355678999999999887776 6689999998643111111       011111111123335567899


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEcccC
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQL  306 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~  306 (512)
                      .+.|+|+|..|+-.+.|..+.+-|....
T Consensus       211 ~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  211 GVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             eeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            9999999999999999999999997554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.79  E-value=1.5e-15  Score=130.52  Aligned_cols=236  Identities=14%  Similarity=0.185  Sum_probs=174.2

Q ss_pred             EEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC--CcEEEE
Q 010390           58 FCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD--QTIKIW  135 (512)
Q Consensus        58 ~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--g~i~iw  135 (512)
                      +..|+.+...|..|+.|| -++|+.+.-..             ..........|..+-|+  ..++|..+.+  +.+++.
T Consensus        10 ~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-------------~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~   73 (391)
T KOG2110|consen   10 FIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-------------CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVV   73 (391)
T ss_pred             eeeeccceeEEEccCCCc-eeEEecCchHH-------------hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEE
Confidence            333599999999999998 56777654311             11111222345555565  4566654444  459999


Q ss_pred             eCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390          136 DAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR  215 (512)
Q Consensus       136 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (512)
                      +...+..++.+. ....|.++.++.   +.|+++-.+ .|.|||+++.+.+.....                        
T Consensus        74 ~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t------------------------  124 (391)
T KOG2110|consen   74 HFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIET------------------------  124 (391)
T ss_pred             EcccCceEEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhc------------------------
Confidence            999888888776 445899999975   456666554 599999998877654422                        


Q ss_pred             cccccccEEEEEEeecCCEEEEEee-cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec
Q 010390          216 RKAASMSITSVLYLKDEVSIATASA-VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM  294 (512)
Q Consensus       216 ~~~~~~~v~~~~~~~~~~~l~~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  294 (512)
                      ...+...+.++..+..+.+++.-++ ..|.|.+||+.+.+...           ....|.+.+-+++|+++|.+||+++.
T Consensus       125 ~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~-----------~I~aH~~~lAalafs~~G~llATASe  193 (391)
T KOG2110|consen  125 TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN-----------TINAHKGPLAALAFSPDGTLLATASE  193 (391)
T ss_pred             cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee-----------EEEecCCceeEEEECCCCCEEEEecc
Confidence            2234456777777777788887543 35899999999988766           46799999999999999999999999


Q ss_pred             CCe-EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390          295 DHR-IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK  351 (512)
Q Consensus       295 dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~  351 (512)
                      .|+ |||+.+.+  ...+..+........+.+++|+|++++|++.++.++|+||.++.
T Consensus       194 KGTVIRVf~v~~--G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  194 KGTVIRVFSVPE--GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             CceEEEEEEcCC--ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            986 78999865  44566666555566788999999999999999999999999864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=2.3e-17  Score=144.11  Aligned_cols=204  Identities=13%  Similarity=0.180  Sum_probs=153.5

Q ss_pred             EEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC
Q 010390          154 KSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV  233 (512)
Q Consensus       154 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  233 (512)
                      .+++|+.++ ..+++++.||++|+|+..+.....                           ....|...|.++.|+||++
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l---------------------------~e~~~~~eV~DL~FS~dgk  199 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTIL---------------------------EEIAHHAEVKDLDFSPDGK  199 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhh---------------------------hhHhhcCccccceeCCCCc
Confidence            678999988 899999999999999976544332                           3457888999999999999


Q ss_pred             EEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC---C--EEEEEecCCeEEEEEcccCCC
Q 010390          234 SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG---V--FLTASCMDHRIYLYNVLQLDK  308 (512)
Q Consensus       234 ~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~  308 (512)
                      .+++.|. | ..+||+.+++.......         ..........+.|+.++   .  .++....-+.|+.||+.....
T Consensus       200 ~lasig~-d-~~~VW~~~~g~~~a~~t---------~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~  268 (398)
T KOG0771|consen  200 FLASIGA-D-SARVWSVNTGAALARKT---------PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG  268 (398)
T ss_pred             EEEEecC-C-ceEEEEeccCchhhhcC---------CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc
Confidence            9999884 6 89999999985443321         12222345667777666   2  233333456788888754433


Q ss_pred             Cce-EeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCc
Q 010390          309 GPI-QHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYT  387 (512)
Q Consensus       309 ~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~  387 (512)
                      ... +..........+.+++.+++|++++.|+.||.|.|++..+-+......+.|...|+.+.|+||. +++++.+.|..
T Consensus       269 ~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~  347 (398)
T KOG0771|consen  269 SNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNE  347 (398)
T ss_pred             ccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCc
Confidence            211 1111112223578899999999999999999999999998887767778999999999999999 89999999999


Q ss_pred             EEEEeCCCCc
Q 010390          388 VRLWSLENSR  397 (512)
Q Consensus       388 i~vwd~~~~~  397 (512)
                      +.|..+.-..
T Consensus       348 ~~v~~l~vd~  357 (398)
T KOG0771|consen  348 AAVTKLAVDK  357 (398)
T ss_pred             eeEEEEeecc
Confidence            9998887643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=5.5e-17  Score=131.23  Aligned_cols=249  Identities=12%  Similarity=0.131  Sum_probs=175.3

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKK----------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      ..|.+-+|+|.+++|+.|..+|.|.+..+.+-          ..+...++|.++|+.++|..   .+|++|+. |.|+-|
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw   86 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGW   86 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEe
Confidence            45666789999999999999999999987541          23455689999999999983   56777764 999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      ..+..........              +.........-...-..|+++...|..+.++.+| -|+.++.||+++++... 
T Consensus        87 ~W~E~~es~~~K~--------------lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r-  150 (325)
T KOG0649|consen   87 EWNEEEESLATKR--------------LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQR-  150 (325)
T ss_pred             eehhhhhhccchh--------------hhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEE-
Confidence            8875443110000              0000000001011224689999999888888878 49999999999998776 


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece------eceeEEEEEECCCC
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR------IESFYVKSEICPNA  332 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~  332 (512)
                                .+.+|...|.++.--.....+++|+.||++++||.++.+.........++      ...++.++  .-+.
T Consensus       151 ----------~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~e  218 (325)
T KOG0649|consen  151 ----------EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNE  218 (325)
T ss_pred             ----------EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccC
Confidence                      58899999999998666667899999999999999875433222211111      22334344  4566


Q ss_pred             CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       333 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      .+|++|+. -.+.+|.++..+..  ....-...|..+.|..   ..+++++..+.|.-|.+..
T Consensus       219 dWlvCGgG-p~lslwhLrsse~t--~vfpipa~v~~v~F~~---d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  219 DWLVCGGG-PKLSLWHLRSSEST--CVFPIPARVHLVDFVD---DCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             ceEEecCC-CceeEEeccCCCce--EEEecccceeEeeeec---ceEEEeccccceeeeeecc
Confidence            78888874 45999999987663  2333456788888865   4788888888999998754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=5.2e-16  Score=147.81  Aligned_cols=305  Identities=14%  Similarity=0.139  Sum_probs=212.8

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI  132 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i  132 (512)
                      ..+|.+   ++.|.+.+..- +..+.+|+..+.....         .....-..|...+++.++||+++++++|..||.|
T Consensus       163 ~~~I~~---~~~ge~~~i~~-~~~~~~~~v~~~~~~~---------~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI  229 (792)
T KOG1963|consen  163 PKSIVD---NNSGEFKGIVH-MCKIHIYFVPKHTKHT---------SSRDITVHHTFNITCVALSPNERYLAAGDSDGRI  229 (792)
T ss_pred             CccEEE---cCCceEEEEEE-eeeEEEEEecccceee---------ccchhhhhhcccceeEEeccccceEEEeccCCcE
Confidence            456777   78888777665 4478899887643110         0111223566779999999999999999999999


Q ss_pred             EEEeCCC--C--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          133 KIWDAEK--K--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       133 ~iwd~~~--~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      .+|.--.  +  .....+.-|...|++++|+++| .+|++|+..|.+.+|.+.+++...                     
T Consensus       230 ~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~kqf---------------------  287 (792)
T KOG1963|consen  230 LVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKKQF---------------------  287 (792)
T ss_pred             EEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCccc---------------------
Confidence            9996322  1  2345567788999999999999 899999999999999999877322                     


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                             +..-.++|..+.++||+...+++. .|..|.+....+...........+...........-.+.++++|.-+.
T Consensus       288 -------LPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  288 -------LPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             -------ccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence                   223356899999999999888766 699999998877665554433333211123334455778899997777


Q ss_pred             EEEEecCCeEEEEEcccCCCCceEeee------ec-eeceeEEEEEECCCCCEEEEecC--------C--CCEEEEecCC
Q 010390          289 LTASCMDHRIYLYNVLQLDKGPIQHFS------GC-RIESFYVKSEICPNASHILSGSS--------D--GNAYVWQVNK  351 (512)
Q Consensus       289 l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~-~~~~~~~~~~~s~~~~~l~~g~~--------d--g~i~iw~~~~  351 (512)
                      ++..+..|.|.+||+.+..........      +. .....+++++.+..|.+++++-.        |  -.+++|-...
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence            888889999999998664332111111      11 23345677888888999988632        2  3588898765


Q ss_pred             CCCC----CceeccccCCeEEEEeCCCCCC-eEEEEeCCCcEEEEeCCCCcccc
Q 010390          352 PQAD----PIKLKSHDGEVTAVNWCPNEAG-KIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       352 ~~~~----~~~~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      ....    ......|+..+...++.+.... ..++++.||.++||-+.+.+-+.
T Consensus       440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~  493 (792)
T KOG1963|consen  440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIY  493 (792)
T ss_pred             CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccC
Confidence            4432    1234678776666665543324 89999999999999996655433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=4.8e-17  Score=155.87  Aligned_cols=234  Identities=16%  Similarity=0.136  Sum_probs=159.6

Q ss_pred             CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCee--eecccC
Q 010390           74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEKKKC--TGALMG  148 (512)
Q Consensus        74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~  148 (512)
                      +..|.|||.+...              ...+..|...+.+.+|+|||+.|+.++.+   ..|++||+.+++.  +..+.+
T Consensus       183 ~~~i~i~d~dg~~--------------~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g  248 (429)
T PRK01742        183 PYEVRVADYDGFN--------------QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG  248 (429)
T ss_pred             eEEEEEECCCCCC--------------ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC
Confidence            4689999986542              33456788899999999999999977654   4699999988753  333444


Q ss_pred             cCCCEEEEEeeCCCCCeEEE-EeCCCcEEEE--eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          149 HTGSIKSLCSHPTNSDILVS-GSRDGSFAIW--DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       149 h~~~v~~l~~~~~~~~~l~s-~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      |   ...++|+|++ +.|+. .+.+|.+.+|  |+.++..                            ..+..+...+..
T Consensus       249 ~---~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~----------------------------~~lt~~~~~~~~  296 (429)
T PRK01742        249 H---NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTP----------------------------SQLTSGAGNNTE  296 (429)
T ss_pred             c---cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCe----------------------------EeeccCCCCcCC
Confidence            3   3468999998 55555 4578876666  4443321                            122234456788


Q ss_pred             EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                      ..|+|+++.++.++..++...+|+++........          . .+..  ....|+|+|+.|+..+.++ +.+||+.+
T Consensus       297 ~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----------l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~  362 (429)
T PRK01742        297 PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----------V-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTS  362 (429)
T ss_pred             EEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----------e-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence            9999999998887767788888887543221111          1 1111  4578999999998887765 55689866


Q ss_pred             CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC--CCCCCCceeccccCCeEEEEeCCC
Q 010390          306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN--KPQADPIKLKSHDGEVTAVNWCPN  374 (512)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~--~~~~~~~~~~~h~~~v~~v~~~~~  374 (512)
                      .....+  .....    ...+.|+|+|++|+.++.++.+.+|++.  ++.. ...+..|.+.+...+|+|-
T Consensus       363 g~~~~l--t~~~~----~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~-~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        363 GSTEVL--SSTFL----DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF-KARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCeEEe--cCCCC----CCCceECCCCCEEEEEEcCCCceEEEEEECCCCc-eEEccCCCCCCCCcccCCC
Confidence            432211  11111    1246899999999999999988888763  2333 4567788888999999984

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=1.2e-16  Score=154.44  Aligned_cols=262  Identities=16%  Similarity=0.206  Sum_probs=183.4

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcC---CCEEEEEeeC-CCCCeEEEEeCCCcEEEEeCCCCC
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHT---GSIKSLCSHP-TNSDILVSGSRDGSFAIWDLRCKS  184 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~  184 (512)
                      ..-..+.|+|-...++++.....|+|||.+.++....|..+.   ..|+.+.+-. ++..++++|+.||.|+||+--...
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            356678899988899999888889999999999887775443   4688888754 334689999999999999854332


Q ss_pred             C-CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          185 S-PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       185 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      . ...     .+....           .......+..+.-.-+.|......++++| +-..|+|||..........    
T Consensus      1145 ~~~~e-----LVTaw~-----------~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~di---- 1203 (1387)
T KOG1517|consen 1145 WKKPE-----LVTAWS-----------SLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADI---- 1203 (1387)
T ss_pred             cCCce-----eEEeec-----------cccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeec----
Confidence            1 110     000000           00001111122225567888888888877 4789999999987765543    


Q ss_pred             ccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCC-ceEeeeeceeceeEEEEEECCCCC-EEEEecC
Q 010390          264 AESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKG-PIQHFSGCRIESFYVKSEICPNAS-HILSGSS  340 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~  340 (512)
                            ..+....|+++.-+- .|+.+++|..||.|++||.+..... .+.....|.....|+.+.+.+.|- .|++|+.
T Consensus      1204 ------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1204 ------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ 1277 (1387)
T ss_pred             ------ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc
Confidence                  222334577776653 4699999999999999998765443 344555555444588888888764 4999999


Q ss_pred             CCCEEEEecCCC-CCCCceecccc--C-CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          341 DGNAYVWQVNKP-QADPIKLKSHD--G-EVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       341 dg~i~iw~~~~~-~~~~~~~~~h~--~-~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      ||.|++||++.. .........|.  + .++++..+++. .++|+|+. +.|+||++...+.-
T Consensus      1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred             CCeEEEEecccCcccccceeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhc
Confidence            999999999984 32222333443  3 59999999998 79999998 99999999765543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=1.8e-15  Score=140.84  Aligned_cols=261  Identities=10%  Similarity=0.060  Sum_probs=161.8

Q ss_pred             CCcceEEEEEecCCCcEEEEe-eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-
Q 010390           51 TPPLAVSFCKTSKNSHIFAVS-DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-  128 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-  128 (512)
                      +.+..+.+   +|++++|+++ ..++.|.+|+++.... .         ...... ...+....++|+|++++|++++. 
T Consensus        35 ~~~~~l~~---spd~~~lyv~~~~~~~i~~~~~~~~g~-l---------~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~  100 (330)
T PRK11028         35 GQVQPMVI---SPDKRHLYVGVRPEFRVLSYRIADDGA-L---------TFAAES-PLPGSPTHISTDHQGRFLFSASYN  100 (330)
T ss_pred             CCCccEEE---CCCCCEEEEEECCCCcEEEEEECCCCc-e---------EEeeee-cCCCCceEEEECCCCCEEEEEEcC
Confidence            44556666   9999988776 4588899999863211 0         111111 12235678999999999987764 


Q ss_pred             CCcEEEEeCCC-Ce---eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          129 DQTIKIWDAEK-KK---CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       129 dg~i~iwd~~~-~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      ++.|.+|++++ +.   .+..+. +.....+++++|++..++++...++.|.+||+.+..........            
T Consensus       101 ~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~------------  167 (330)
T PRK11028        101 ANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA------------  167 (330)
T ss_pred             CCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC------------
Confidence            88999999864 32   222232 23456778899998444466666799999999763322100000            


Q ss_pred             ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc--cceecccCCCccccccccccccCeeEEEe
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL--KAQITQAWPHAESSSAKETRLHGISSLSQ  282 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (512)
                              .... ........+.|+|++++++++...++.|.+||++..  ........... +  ...........+.+
T Consensus       168 --------~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~-p--~~~~~~~~~~~i~~  235 (330)
T PRK11028        168 --------EVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM-P--ADFSDTRWAADIHI  235 (330)
T ss_pred             --------ceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC-C--CcCCCCccceeEEE
Confidence                    0000 112345678999999999887766899999999742  21111100000 0  00001122346889


Q ss_pred             CCCCCEEEEEec-CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC-CCCEEEEecCC
Q 010390          283 DSNGVFLTASCM-DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-DGNAYVWQVNK  351 (512)
Q Consensus       283 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~  351 (512)
                      +|++++|+++.. ++.|.+|++...... ...............++++|+|++|+++.. +++|.+|+++.
T Consensus       236 ~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        236 TPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            999999999864 689999998543221 111111111123346899999999987665 88999998863

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=5.6e-17  Score=145.55  Aligned_cols=209  Identities=15%  Similarity=0.165  Sum_probs=161.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      .+.++.++.||.+.|.+ ..++....+..|.+.|.+-.|+|+| .-|++++.||.|++|.-...-               
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGML---------------  137 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGML---------------  137 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccchH---------------
Confidence            45688889999999988 5677788889999999999999999 889999999999999854221               


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                   ...+.....+|.|++|.|+.+.++.+.  .+.+.|=-+.....+.           ....|.+-|.+
T Consensus       138 -------------RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i-----------~WkAHDGiiL~  191 (737)
T KOG1524|consen  138 -------------RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANSKII-----------RWRAHDGLVLS  191 (737)
T ss_pred             -------------HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeeccccccee-----------EEeccCcEEEE
Confidence                         112223456899999999999888764  6777776655444433           57889999999


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      +.|++...++++|+.|-..++||-..   ..+  +.....+..+++++|.|+ ..++.++. ++++            ..
T Consensus       192 ~~W~~~s~lI~sgGED~kfKvWD~~G---~~L--f~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~  252 (737)
T KOG1524|consen  192 LSWSTQSNIIASGGEDFRFKIWDAQG---ANL--FTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FS  252 (737)
T ss_pred             eecCccccceeecCCceeEEeecccC---ccc--ccCChhccceeeeeeccc-cceeeeee-eeee------------ec
Confidence            99999999999999999999999632   222  333344567899999999 66666653 2333            22


Q ss_pred             ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEE
Q 010390          360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW  391 (512)
Q Consensus       360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw  391 (512)
                      ....+.|..++|++|| ..++.|...|.+.+=
T Consensus       253 ~p~~GSifnlsWS~DG-TQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  253 SPRVGSIFNLSWSADG-TQATCGTSTGQLIVA  283 (737)
T ss_pred             CCCccceEEEEEcCCC-ceeeccccCceEEEe
Confidence            3346789999999999 889888888877653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.76  E-value=2.2e-16  Score=132.98  Aligned_cols=246  Identities=14%  Similarity=0.188  Sum_probs=184.1

Q ss_pred             cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC  182 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  182 (512)
                      --.++|+|.+|++|+..+|.+-....|.||.....   +..+++..|...|++|+|.|.. +.|++|+.|..-++|....
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC
Confidence            34579999999999999999999999999987655   4678899999999999999988 8999999999999999843


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~  262 (512)
                      +..                        .+....+..++...+++.|+|.++.+++ |+....|.+|-.+....-..... 
T Consensus        87 ~~~------------------------WkptlvLlRiNrAAt~V~WsP~enkFAV-gSgar~isVcy~E~ENdWWVsKh-  140 (361)
T KOG1523|consen   87 GGT------------------------WKPTLVLLRINRAATCVKWSPKENKFAV-GSGARLISVCYYEQENDWWVSKH-  140 (361)
T ss_pred             CCe------------------------eccceeEEEeccceeeEeecCcCceEEe-ccCccEEEEEEEecccceehhhh-
Confidence            321                        1222345567789999999999999988 55688899988776543321110 


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc--cCCCC----------ceEee--eeceeceeEEEEEE
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL--QLDKG----------PIQHF--SGCRIESFYVKSEI  328 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~----------~~~~~--~~~~~~~~~~~~~~  328 (512)
                            ....+...|.++.|+|++-+|++|+.|+..++|..-  ..+.+          +...+  +.....+.+..+.|
T Consensus       141 ------ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f  214 (361)
T KOG1523|consen  141 ------IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF  214 (361)
T ss_pred             ------hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence                  233445679999999999999999999999999741  11111          11110  11134467888999


Q ss_pred             CCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390          329 CPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY  386 (512)
Q Consensus       329 s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg  386 (512)
                      +|+|..|+-.+.|..+.+=|...+...........-+..++.|-.+.  .++.++.|.
T Consensus       215 s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~--~vv~ag~~c  270 (361)
T KOG1523|consen  215 SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN--SVVAAGYDC  270 (361)
T ss_pred             CCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC--ceeecCCCC
Confidence            99999999999999999999887764334443334778888887654  566666663

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=4.4e-15  Score=125.20  Aligned_cols=241  Identities=14%  Similarity=0.222  Sum_probs=168.0

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCc--EEEEEEecCCCEEE-EEeC
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA--IFDLCWIKEDTNIL-TASG  128 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~s~~~~~l~-s~~~  128 (512)
                      ...+++|   +.|..-+++|..+| .+||+.+--..             ...-+.+.+.  +..+-|  ..++|+ .||.
T Consensus         7 ~~lsvs~---NQD~ScFava~~~G-friyn~~P~ke-------------~~~r~~~~~G~~~veMLf--R~N~laLVGGg   67 (346)
T KOG2111|consen    7 KTLSVSF---NQDHSCFAVATDTG-FRIYNCDPFKE-------------SASRQFIDGGFKIVEMLF--RSNYLALVGGG   67 (346)
T ss_pred             ceeEEEE---ccCCceEEEEecCc-eEEEecCchhh-------------hhhhccccCchhhhhHhh--hhceEEEecCC
Confidence            3445777   89999999998776 89999864211             1111112222  222222  344555 4444


Q ss_pred             C------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC-CCCCCccccceeeecccc
Q 010390          129 D------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK-SSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       129 d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~  201 (512)
                      +      ..|.|||=...+++.++. ...+|.++.+.++   .|++.- ++.|.||...+. +.....            
T Consensus        68 ~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~------------  130 (346)
T KOG2111|consen   68 SRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVI------------  130 (346)
T ss_pred             CCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeee------------
Confidence            3      579999966667777776 5679999999873   455554 468999998732 222211            


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                   ........+.+++-+.+...|+.-|-.-|.|.|-|+...+...         ......|...|.|++
T Consensus       131 -------------et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~---------p~~I~AH~s~Iacv~  188 (346)
T KOG2111|consen  131 -------------ETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA---------PSIINAHDSDIACVA  188 (346)
T ss_pred             -------------ecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC---------ceEEEcccCceeEEE
Confidence                         1111122355555555666677777778999999998765421         115789999999999


Q ss_pred             eCCCCCEEEEEecCCe-EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390          282 QDSNGVFLTASCMDHR-IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       282 ~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~  352 (512)
                      ++.+|.++|+++..|+ |||||..+  ...+..+........+.+++|||+..+||++++.|+++||.++..
T Consensus       189 Ln~~Gt~vATaStkGTLIRIFdt~~--g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  189 LNLQGTLVATASTKGTLIRIFDTED--GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EcCCccEEEEeccCcEEEEEEEcCC--CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            9999999999999997 79999766  456677776666677999999999999999999999999998763

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=6.9e-17  Score=145.01  Aligned_cols=207  Identities=17%  Similarity=0.239  Sum_probs=157.5

Q ss_pred             cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec
Q 010390           66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA  145 (512)
Q Consensus        66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  145 (512)
                      +.|+.++.||.+.|-+-...              .-....+|.+.|.+-.|+|||.-|++++.||.|+||. ++|-...+
T Consensus        76 d~~~i~s~DGkf~il~k~~r--------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRSt  140 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSAR--------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRST  140 (737)
T ss_pred             ceEEEEcCCceEEEecccch--------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHH
Confidence            57888899999999875432              2445678999999999999999999999999999998 56666666


Q ss_pred             ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      +.....+|.|++|.|+.++.+++.+.  .+.+=.+...                           ....+.++|++-|.+
T Consensus       141 l~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n---------------------------~k~i~WkAHDGiiL~  191 (737)
T KOG1524|consen  141 VVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAAN---------------------------SKIIRWRAHDGLVLS  191 (737)
T ss_pred             HhhcCceeEEEEECCCCCceEEecCC--eEEEeecccc---------------------------cceeEEeccCcEEEE
Confidence            66677899999999998777776653  4555444321                           223367899999999


Q ss_pred             EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                      +.|++....+++ |++|-..++||.......            ....|..+|++++|.|+ ..++.++.+ ++++     
T Consensus       192 ~~W~~~s~lI~s-gGED~kfKvWD~~G~~Lf------------~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~-----  251 (737)
T KOG1524|consen  192 LSWSTQSNIIAS-GGEDFRFKIWDAQGANLF------------TSAAEEYAITSVAFNPE-KDYLLWSYN-TARF-----  251 (737)
T ss_pred             eecCccccceee-cCCceeEEeecccCcccc------------cCChhccceeeeeeccc-cceeeeeee-eeee-----
Confidence            999999988887 558999999997654322            35667788999999999 555555432 3331     


Q ss_pred             CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390          306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV  346 (512)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  346 (512)
                               .. +..+.+..++||+||..+++|+..|.+.+
T Consensus       252 ---------~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  252 ---------SS-PRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ---------cC-CCccceEEEEEcCCCceeeccccCceEEE
Confidence                     11 11234778999999999999999887654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.1e-17  Score=145.60  Aligned_cols=294  Identities=14%  Similarity=0.170  Sum_probs=215.0

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecc-cCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEE
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL-MGHTGSIKSLCSHPTN-SDILVSGSRDGSFAI  177 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~v  177 (512)
                      ....|..|.+.|+.+.|+..|..|++|+.|..|.+||+..++....+ .+|...|....|.|.. ...+++++.||.+++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            45667899999999999999999999999999999999998876665 5788889888898853 367999999999998


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                      =.+......                        .....+..|.+.|..++.-|+...-+.+++.|+.+.-+|++......
T Consensus       214 s~i~~t~~~------------------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~  269 (559)
T KOG1334|consen  214 SEILETGYV------------------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE  269 (559)
T ss_pred             eeeccccce------------------------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence            776533221                        12335668899999999999888777667789999999999776544


Q ss_pred             cccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCc----eEeeeec----eeceeEEEEEE
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGP----IQHFSGC----RIESFYVKSEI  328 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~----~~~~~~~~~~~  328 (512)
                      .......     .....-....++.+|... .+++++.|..+++||.+......    +..+..+    .....|++++|
T Consensus       270 ~~~cr~~-----~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y  344 (559)
T KOG1334|consen  270 KFVCREA-----DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY  344 (559)
T ss_pred             eeeeecc-----CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe
Confidence            4321110     111123577888888654 89999999999999987654331    1111111    22346889999


Q ss_pred             CCCCCEEEEecCCCCEEEEecCCCC------------CCCceeccccC--CeEEEEe-CCCCCCeEEEEeCCCcEEEEeC
Q 010390          329 CPNASHILSGSSDGNAYVWQVNKPQ------------ADPIKLKSHDG--EVTAVNW-CPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       329 s~~~~~l~~g~~dg~i~iw~~~~~~------------~~~~~~~~h~~--~v~~v~~-~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      +.++.-|++.-.|-.|+++.-..+.            .....+++|..  .|..+-| -|.. .++++|++-|.|.||+-
T Consensus       345 sh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K  423 (559)
T KOG1334|consen  345 SHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDK  423 (559)
T ss_pred             cCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEec
Confidence            9887777777778889999543221            12234778854  5777775 4666 89999999999999999


Q ss_pred             CCCcccccccCccccceeeeeccchhcccccC
Q 010390          394 ENSRCSSMRSPSSVRRRVMAIPSTECRKLFMN  425 (512)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (512)
                      .+++.++.......  .|.|+-..|...+++.
T Consensus       424 ~t~eii~~MegDr~--VVNCLEpHP~~PvLAs  453 (559)
T KOG1334|consen  424 KTGEIIRFMEGDRH--VVNCLEPHPHLPVLAS  453 (559)
T ss_pred             chhHHHHHhhcccc--eEeccCCCCCCchhhc
Confidence            99999887655443  6667766666666654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.74  E-value=2e-17  Score=145.89  Aligned_cols=270  Identities=14%  Similarity=0.233  Sum_probs=197.7

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI  132 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i  132 (512)
                      .+.+.|   +.+|.+|+.|+..|.|-.+|..++..             ...+ .-.+.|.++.|..+.+++|++ ...-+
T Consensus       132 PY~~~y---trnGrhlllgGrKGHlAa~Dw~t~~L-------------~~Ei-~v~Etv~Dv~~LHneq~~AVA-QK~y~  193 (545)
T KOG1272|consen  132 PYHLDY---TRNGRHLLLGGRKGHLAAFDWVTKKL-------------HFEI-NVMETVRDVTFLHNEQFFAVA-QKKYV  193 (545)
T ss_pred             Ceeeee---cCCccEEEecCCccceeeeeccccee-------------eeee-ehhhhhhhhhhhcchHHHHhh-hhceE
Confidence            567777   99999999999999999999987643             2222 234689999999888888887 45679


Q ss_pred             EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccc
Q 010390          133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKR  212 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (512)
                      +||| ..|..++.++.|. .|..+.|.|.. .+|++++..|.++.-|+..++....                        
T Consensus       194 yvYD-~~GtElHClk~~~-~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~------------------------  246 (545)
T KOG1272|consen  194 YVYD-NNGTELHCLKRHI-RVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVAS------------------------  246 (545)
T ss_pred             EEec-CCCcEEeehhhcC-chhhhcccchh-heeeecccCCceEEEeechhhhhHH------------------------
Confidence            9999 6777888888664 79999999987 8999999999999999998876543                        


Q ss_pred             ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE
Q 010390          213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS  292 (512)
Q Consensus       213 ~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  292 (512)
                         +....+.+..++-+|-+..+-+ |..+|+|.+|.......+.           .+..|.++|.+++++++|.+++++
T Consensus       247 ---~~t~~G~~~vm~qNP~NaVih~-GhsnGtVSlWSP~skePLv-----------KiLcH~g~V~siAv~~~G~YMaTt  311 (545)
T KOG1272|consen  247 ---IRTGAGRTDVMKQNPYNAVIHL-GHSNGTVSLWSPNSKEPLV-----------KILCHRGPVSSIAVDRGGRYMATT  311 (545)
T ss_pred             ---HHccCCccchhhcCCccceEEE-cCCCceEEecCCCCcchHH-----------HHHhcCCCcceEEECCCCcEEeec
Confidence               3334556777777787766555 7689999999998877665           467888999999999999999999


Q ss_pred             ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC-CCC-CCCceeccc--cCCeEE
Q 010390          293 CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN-KPQ-ADPIKLKSH--DGEVTA  368 (512)
Q Consensus       293 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~-~~~-~~~~~~~~h--~~~v~~  368 (512)
                      +.|..++|||++....  +..+..   ......+++|..| +||. +....|.||.=. .+. .....+..|  .+.|..
T Consensus       312 G~Dr~~kIWDlR~~~q--l~t~~t---p~~a~~ls~Sqkg-lLA~-~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~  384 (545)
T KOG1272|consen  312 GLDRKVKIWDLRNFYQ--LHTYRT---PHPASNLSLSQKG-LLAL-SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVED  384 (545)
T ss_pred             ccccceeEeeeccccc--cceeec---CCCcccccccccc-ceee-ecCCeeeeehhhhcCCCCCCcchhhhccCccccc
Confidence            9999999999987542  222222   1223346776655 3333 344569999432 211 111222233  468999


Q ss_pred             EEeCCCCCCeEEEEeCCCcEEE
Q 010390          369 VNWCPNEAGKIVTSSDDYTVRL  390 (512)
Q Consensus       369 v~~~~~~~~~l~s~~~dg~i~v  390 (512)
                      +.|+|-. ..|-.|-..|.-.+
T Consensus       385 l~FcP~E-DvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  385 LRFCPYE-DVLGIGHAGGITSI  405 (545)
T ss_pred             ceeccHH-HeeeccccCCceeE
Confidence            9999976 56665555554333

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=6.4e-17  Score=145.61  Aligned_cols=238  Identities=16%  Similarity=0.241  Sum_probs=166.0

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecc-cCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEE
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL-MGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIW  178 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vw  178 (512)
                      ...+.||++.|+++.|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-|.. ..++++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            4567899999999999999999999999999999999888887776 5899999999999964 3588999999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      |+...+.-..-                 -........+..|...|..++-.|++...+-++++||+++-+|++....-..
T Consensus       123 dl~~~~~~~~d-----------------~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  123 DLDSSKEGGMD-----------------HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             ecccccccccc-----------------cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence            99853321111                 0012223345678888999999999977776777999999999997432211


Q ss_pred             ccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCC----------------ceEeee-ece--
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKG----------------PIQHFS-GCR--  318 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~----------------~~~~~~-~~~--  318 (512)
                      ....+. .........-...++.++|. ..+|++|+.|-..++||.+.....                .+..+. ++.  
T Consensus       186 ~~~~~~-~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn  264 (758)
T KOG1310|consen  186 DEDCPS-ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN  264 (758)
T ss_pred             cccccH-HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence            100000 00011222245678899985 468999999999999995321100                111111 111  


Q ss_pred             ----ecee---EEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390          319 ----IESF---YVKSEICPNASHILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       319 ----~~~~---~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                          ....   ++-++|+|+|.-|++.-..-.|+++|+...+.+.
T Consensus       265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~  309 (758)
T KOG1310|consen  265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT  309 (758)
T ss_pred             cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence                1111   3457899999877665555569999998876543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1.6e-16  Score=139.01  Aligned_cols=204  Identities=19%  Similarity=0.243  Sum_probs=150.7

Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          112 FDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       112 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      ..++|+.+|..|++|+.||++|||++.+...+.....|...|.++.|+|++ .+|++.+.| ..+||+++++........
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            789999999999999999999999988888888888899999999999998 899999999 999999998854432211


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEeecC---C-EEEEEeecCCeEEEEeccCccceecccCCCcccc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE---V-SIATASAVNSIVKFWDTRNLKAQITQAWPHAESS  267 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  267 (512)
                                               ...+.....+.|..++   . ++++.-...+.|..||+.....-... ..     
T Consensus       226 -------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l-~~-----  274 (398)
T KOG0771|consen  226 -------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL-RL-----  274 (398)
T ss_pred             -------------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc-ch-----
Confidence                                     1122345556666554   2 23333334456777666543321000 00     


Q ss_pred             ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390          268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW  347 (512)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  347 (512)
                      .........|++++.+.+|++++.|+.||.|-+++..+.+   ...+..+.+...|+.+.|+|+.+++++.+.|..+.|.
T Consensus       275 ~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq---~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  275 RKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ---RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             hhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee---eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            0233334579999999999999999999999999986532   2333334445689999999999999999999999988


Q ss_pred             ecCC
Q 010390          348 QVNK  351 (512)
Q Consensus       348 ~~~~  351 (512)
                      .+..
T Consensus       352 ~l~v  355 (398)
T KOG0771|consen  352 KLAV  355 (398)
T ss_pred             EEee
Confidence            7765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=1.2e-15  Score=149.97  Aligned_cols=271  Identities=16%  Similarity=0.240  Sum_probs=178.7

Q ss_pred             ccccceeccccCCCcEEEEEEecCC-CEEEEEeCCCcEEEEeCCCC-------eeeecccCcCCCEEEEEeeCCCCCeEE
Q 010390           96 AEKARISDWVAHQNAIFDLCWIKED-TNILTASGDQTIKIWDAEKK-------KCTGALMGHTGSIKSLCSHPTNSDILV  167 (512)
Q Consensus        96 ~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~  167 (512)
                      ..+..+..+..|...|..++.++.. .+++||+.||+|++||...-       +...++......+.++...+.+ +.+|
T Consensus      1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFA 1114 (1431)
T ss_pred             ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEE
Confidence            3456788889999999999998855 99999999999999997542       2233344356788999998877 8899


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec-CCEEEEEeecCCeEE
Q 010390          168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD-EVSIATASAVNSIVK  246 (512)
Q Consensus       168 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~g~~dg~i~  246 (512)
                      .++.||.|++.+++...........                  .+.........-+..-+|... +..+++.+...+.|.
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~------------------~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQ------------------VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeee------------------eecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence            9999999999999863222111110                  001111111222333344332 232444566889999


Q ss_pred             EEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEE
Q 010390          247 FWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKS  326 (512)
Q Consensus       247 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  326 (512)
                      .||++........         ......+.|++++.+|.+.+++.|...|.+.+||++-..  ++... .++....+..+
T Consensus      1177 ~~D~r~~~~~w~l---------k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~--~i~sw-~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRL---------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV--PILSW-EHPARAPIRHV 1244 (1431)
T ss_pred             EecchhhhhHHhh---------hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc--eeecc-cCcccCCcceE
Confidence            9999987766554         344445779999999999999999999999999997532  22222 22333455566


Q ss_pred             EECCC---CCEEEEec--CCCCEEEEecCCCCCCCceeccc-------------------cCCeEEEEeCCCCCCeEEEE
Q 010390          327 EICPN---ASHILSGS--SDGNAYVWQVNKPQADPIKLKSH-------------------DGEVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       327 ~~s~~---~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~h-------------------~~~v~~v~~~~~~~~~l~s~  382 (512)
                      ..+|-   ....++++  ..+.|.+|++.++... ..+...                   .-......+...+ ..+.+|
T Consensus      1245 ~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~-~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltg 1322 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ-TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTG 1322 (1431)
T ss_pred             EeeccCCCCceEEEecccCCCceeeeecccCcce-EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeec
Confidence            66554   34554444  4678999999887542 222111                   1112222333333 689999


Q ss_pred             eCCCcEEEEeCCCCccc
Q 010390          383 SDDYTVRLWSLENSRCS  399 (512)
Q Consensus       383 ~~dg~i~vwd~~~~~~~  399 (512)
                      +.|..|+.||....+..
T Consensus      1323 gsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             CCccceeeccCCCcccc
Confidence            99999999999876543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=5.3e-17  Score=146.78  Aligned_cols=228  Identities=15%  Similarity=0.177  Sum_probs=159.0

Q ss_pred             eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390           39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK  118 (512)
Q Consensus        39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~  118 (512)
                      .-.....+++|.+||.||.+   ++++..+.+|+-||+|+.|++....-....   .........+.||.+.|+.+++|+
T Consensus       333 ~~epi~tfraH~gPVl~v~v---~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds---~dp~vl~~~l~Ghtdavw~l~~s~  406 (577)
T KOG0642|consen  333 DVEPILTFRAHEGPVLCVVV---PSNGEHCYSGGIDGTIRCWNLPPNQDPDDS---YDPSVLSGTLLGHTDAVWLLALSS  406 (577)
T ss_pred             ceeeeEEEecccCceEEEEe---cCCceEEEeeccCceeeeeccCCCCCcccc---cCcchhccceeccccceeeeeecc
Confidence            33556788999999999999   999999999999999999976522211111   112234567889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeecccCc--CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          119 EDTNILTASGDQTIKIWDAEKKKCTGALMGH--TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      ....|++++.||+++.|+...... .++...  .+.-.++.+-.......++   +..++.+++...+......    ++
T Consensus       407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~----~~  478 (577)
T KOG0642|consen  407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSDLL----IF  478 (577)
T ss_pred             cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhh---hcccccccchhhhhhhhee----ec
Confidence            999999999999999999876655 333222  2334555554433122222   2334444443322221110    00


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                      ....             .........+..+.++|.....+. +..|+.|+++|..++..+.           ....|...
T Consensus       479 ~s~~-------------~~~~~~~~~in~vVs~~~~~~~~~-~hed~~Ir~~dn~~~~~l~-----------s~~a~~~s  533 (577)
T KOG0642|consen  479 ESSA-------------SPGPRRYPQINKVVSHPTADITFT-AHEDRSIRFFDNKTGKILH-----------SMVAHKDS  533 (577)
T ss_pred             cccC-------------CCcccccCccceEEecCCCCeeEe-cccCCceecccccccccch-----------heeeccce
Confidence            0000             011111245778889999977777 4489999999999988776           57788889


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                      ++++++.|+|-+|++++.|+.+++|.+..
T Consensus       534 vtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  534 VTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             ecceeecCCCceEEeecCCceeehhhccc
Confidence            99999999999999999999999999743

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.72  E-value=9.8e-16  Score=137.81  Aligned_cols=260  Identities=13%  Similarity=0.127  Sum_probs=170.6

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee----eecccCcCCCEEEEEe-----eCCCCCeEEEEeCCCcEEEEeC
Q 010390          110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC----TGALMGHTGSIKSLCS-----HPTNSDILVSGSRDGSFAIWDL  180 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~-----~~~~~~~l~s~~~dg~i~vwd~  180 (512)
                      .+....++-.|++|+..-. ..+++|+...+..    +....-......|=+|     .+++ --++.|-.-|.|++.|.
T Consensus       125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~idp  202 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLIDP  202 (636)
T ss_pred             ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCC-cceEEeeccCceEEecc
Confidence            4555555667788876543 3589998874322    1111111111222233     3344 55777777789999887


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee---
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI---  257 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~---  257 (512)
                      ...+.......                       ........++|+.|-|.+..++.+...+|.+++||........   
T Consensus       203 ~~~~~sklfne-----------------------~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~  259 (636)
T KOG2394|consen  203 INFEVSKLFNE-----------------------ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS  259 (636)
T ss_pred             hhhHHHHhhhh-----------------------cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence            65222111111                       1111236899999999888877778889999999874211110   


Q ss_pred             cccCCC--------------ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc-eEeeeeceecee
Q 010390          258 TQAWPH--------------AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESF  322 (512)
Q Consensus       258 ~~~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~  322 (512)
                      ....+.              ..+..........|...+|+|||++||+.+.||.++|||..+.+... .+.+.     .-
T Consensus       260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-----GG  334 (636)
T KOG2394|consen  260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-----GG  334 (636)
T ss_pred             ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-----cc
Confidence            000000              01222333345579999999999999999999999999986533211 11121     33


Q ss_pred             EEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCC----------------------------
Q 010390          323 YVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN----------------------------  374 (512)
Q Consensus       323 ~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~----------------------------  374 (512)
                      ..|++|||||+||++|++|--|.||.+...+. +..-.+|+.+|..|+|.|.                            
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV-VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~  413 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV-VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRA  413 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEeccceE-EEeccccccceeeEeecccccccccccccccccccccchhccccccc
Confidence            67899999999999999999999999988765 5677899999999999831                            


Q ss_pred             -------------------CCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          375 -------------------EAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       375 -------------------~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                                         -.+.|.+.+.|-.+.+||+....+..
T Consensus       414 ~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  414 NGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             CCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence                               01468889999999999998776555

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.72  E-value=1.3e-15  Score=129.51  Aligned_cols=270  Identities=17%  Similarity=0.262  Sum_probs=174.0

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC------------CCcEEEEEEe
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH------------QNAIFDLCWI  117 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~V~~l~~s  117 (512)
                      .+-|.+|.|   ...|.+||||+.+|.|.+|.-.....        .+......++.|            .+.|..+.|.
T Consensus        25 adiis~vef---~~~Ge~LatGdkgGRVv~f~r~~~~~--------~ey~~~t~fqshepEFDYLkSleieEKinkIrw~   93 (433)
T KOG1354|consen   25 ADIISAVEF---DHYGERLATGDKGGRVVLFEREKLYK--------GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL   93 (433)
T ss_pred             hcceeeEEe---ecccceEeecCCCCeEEEeecccccc--------cceeeeeeeeccCcccchhhhhhhhhhhhhceec
Confidence            455778888   89999999999999999997543321        011122333333            3578999999


Q ss_pred             cCC--CEEEEEeCCCcEEEEeCCCCee-----------------------------------eecc-cCcCCCEEEEEee
Q 010390          118 KED--TNILTASGDQTIKIWDAEKKKC-----------------------------------TGAL-MGHTGSIKSLCSH  159 (512)
Q Consensus       118 ~~~--~~l~s~~~dg~i~iwd~~~~~~-----------------------------------~~~~-~~h~~~v~~l~~~  159 (512)
                      +++  ..++..+.|.+|++|.+.....                                   .+.+ ..|.-.|++|+++
T Consensus        94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N  173 (433)
T KOG1354|consen   94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN  173 (433)
T ss_pred             CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence            854  4566777899999998754211                                   0111 3477889999999


Q ss_pred             CCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe
Q 010390          160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS  239 (512)
Q Consensus       160 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g  239 (512)
                      .+. ..++++ .|=.|.+|+++-........                   .-.......-..-|++..|+|....+++-+
T Consensus       174 sD~-Et~lSA-DdLRINLWnlei~d~sFnIV-------------------DIKP~nmEeLteVITsaEFhp~~cn~f~YS  232 (433)
T KOG1354|consen  174 SDK-ETFLSA-DDLRINLWNLEIIDQSFNIV-------------------DIKPANMEELTEVITSAEFHPHHCNVFVYS  232 (433)
T ss_pred             Ccc-ceEeec-cceeeeeccccccCCceeEE-------------------EccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence            887 666665 46789999987332111000                   000001111223588899999877666656


Q ss_pred             ecCCeEEEEeccCcccee-----cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee
Q 010390          240 AVNSIVKFWDTRNLKAQI-----TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF  314 (512)
Q Consensus       240 ~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  314 (512)
                      +..|+|++.|++......     ......+....-+......|..+.|+++|+++++-. --+|++||+.. +.+++..+
T Consensus       233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nm-e~~pv~t~  310 (433)
T KOG1354|consen  233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNM-EAKPVETY  310 (433)
T ss_pred             cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccc-cCCcceEE
Confidence            679999999999432211     111111111123344456789999999999998763 35899999844 34555555


Q ss_pred             eeceec----------e---eEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390          315 SGCRIE----------S---FYVKSEICPNASHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       315 ~~~~~~----------~---~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      .-|...          .   .-..++|+.++.++++|+..+.+++|++..+.
T Consensus       311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  311 PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             eehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            443210          0   11247899999999999999999999966543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.4e-15  Score=127.96  Aligned_cols=246  Identities=19%  Similarity=0.247  Sum_probs=167.6

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      +..+..++|++.-..++++..|-.|++||-.. ++...++ .....|+|++|-|.+...|+.|+. +-|++|........
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence            45788999999766788999999999999766 4444444 234689999999998888998887 46999987643322


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                      ......             .......+....+| .+|+++.|.+||..+++++..|..|.|||..++.....        
T Consensus       176 ~r~~~~-------------~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL--------  233 (445)
T KOG2139|consen  176 NRNIRM-------------MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL--------  233 (445)
T ss_pred             cccccc-------------ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--------
Confidence            211000             00011112222333 78999999999999999988899999999999876542        


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV  346 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  346 (512)
                         .....+++.-+.|+||+.+|+++.-|+..++|+....-....-.+ +   ...+...+|+|+|++|+.... |.-++
T Consensus       234 ---~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-g---sgrvqtacWspcGsfLLf~~s-gsp~l  305 (445)
T KOG2139|consen  234 ---IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-G---SGRVQTACWSPCGSFLLFACS-GSPRL  305 (445)
T ss_pred             ---cccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-c---CCceeeeeecCCCCEEEEEEc-CCceE
Confidence               223446788999999999999999999999996543211111111 1   125677899999998865543 34556


Q ss_pred             EecCCCCCCCc--------------------eecc---ccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390          347 WQVNKPQADPI--------------------KLKS---HDGEVTAVNWCPNEAGKIVTSSDDY  386 (512)
Q Consensus       347 w~~~~~~~~~~--------------------~~~~---h~~~v~~v~~~~~~~~~l~s~~~dg  386 (512)
                      |.+.-......                    ...+   -.+.+.+++|.|.| .+|++.-..+
T Consensus       306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~  367 (445)
T KOG2139|consen  306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQ  367 (445)
T ss_pred             EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCC
Confidence            65532211100                    0011   13678999999999 7888765443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=1.2e-14  Score=125.11  Aligned_cols=240  Identities=15%  Similarity=0.199  Sum_probs=171.2

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSS  185 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~  185 (512)
                      ...+..+.|+.+...|..|+.|| .++++.+..............|-.+-|+.   .++|..+.+.  .+++.++.....
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence            34567777999998999999999 78898776544222222333455666764   5666666554  488888775443


Q ss_pred             CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                      +...                            ....+|.++.++.+  .++++  -...|+|||+++.+.+.+...    
T Consensus        81 ICe~----------------------------~fpt~IL~VrmNr~--RLvV~--Lee~IyIydI~~MklLhTI~t----  124 (391)
T KOG2110|consen   81 ICEI----------------------------FFPTSILAVRMNRK--RLVVC--LEESIYIYDIKDMKLLHTIET----  124 (391)
T ss_pred             EEEE----------------------------ecCCceEEEEEccc--eEEEE--EcccEEEEecccceeehhhhc----
Confidence            2211                            12346777777644  45543  255699999999998876532    


Q ss_pred             ccccccccccCeeEEEeCCCCCEEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390          266 SSSAKETRLHGISSLSQDSNGVFLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN  343 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  343 (512)
                          ...+..++.++.+++.+.+|+.-+  ..|.|.+||..+  ..++..+..|.  +.+-+++|+++|.+||++++.|+
T Consensus       125 ----~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~aH~--~~lAalafs~~G~llATASeKGT  196 (391)
T KOG2110|consen  125 ----TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTINAHK--GPLAALAFSPDGTLLATASEKGT  196 (391)
T ss_pred             ----cCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEEecC--CceeEEEECCCCCEEEEeccCce
Confidence                223445677778887777888543  469999999865  44555666554  56788999999999999999997


Q ss_pred             -EEEEecCCCCCCCceeccc--cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          344 -AYVWQVNKPQADPIKLKSH--DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       344 -i~iw~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                       ||||.+.+++.. ..++.-  -..|.+++|+|++ .+|++.|..++|+|+.++...
T Consensus       197 VIRVf~v~~G~kl-~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  197 VIRVFSVPEGQKL-YEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEEEcCCccEe-eeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecccc
Confidence             899999988774 444322  2468999999999 899999999999999998766

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=9e-15  Score=139.84  Aligned_cols=236  Identities=13%  Similarity=0.123  Sum_probs=153.6

Q ss_pred             CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCeeeecccCcCC
Q 010390           75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---DQTIKIWDAEKKKCTGALMGHTG  151 (512)
Q Consensus        75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~h~~  151 (512)
                      ..|.+||.+...              .+.+..+...+.+.+|+|||+.|+..+.   +..|.+|++.+++..... ...+
T Consensus       179 ~~l~~~d~dg~~--------------~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~  243 (429)
T PRK03629        179 YELRVSDYDGYN--------------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPR  243 (429)
T ss_pred             eeEEEEcCCCCC--------------CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCC
Confidence            368888887543              2334456678999999999999986542   457999999888543322 2233


Q ss_pred             CEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390          152 SIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL  229 (512)
Q Consensus       152 ~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  229 (512)
                      .+..+.|+|++..++++.+.+|  .|.+||+.++....                            +..+...+....|+
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----------------------------lt~~~~~~~~~~wS  295 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----------------------------VTDGRSNNTEPTWF  295 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------------------------ccCCCCCcCceEEC
Confidence            3456899999944444555555  48888987654211                            11223356788999


Q ss_pred             ecCCEEEEEeecCCeEEEE--eccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcc
Q 010390          230 KDEVSIATASAVNSIVKFW--DTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVL  304 (512)
Q Consensus       230 ~~~~~l~~~g~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~  304 (512)
                      |+++.++.++..++...+|  |+.++....            ............|+|||++|+..+.+   ..|.+||+.
T Consensus       296 PDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~------------lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~  363 (429)
T PRK03629        296 PDSQNLAYTSDQAGRPQVYKVNINGGAPQR------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA  363 (429)
T ss_pred             CCCCEEEEEeCCCCCceEEEEECCCCCeEE------------eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence            9999998866545544444  665543221            11122335678899999998876643   358889986


Q ss_pred             cCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC---EEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390          305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN---AYVWQVNKPQADPIKLKSHDGEVTAVNWCP  373 (512)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~---i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~  373 (512)
                      +...   ..+....   ......|+|||++|+.++.++.   +.+++++....  ..+.+|.+.+...+|+|
T Consensus       364 ~g~~---~~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~--~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        364 TGGV---QVLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK--ARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CCCe---EEeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe--EECccCCCCcCCcccCC
Confidence            5432   2222211   1224689999999998887764   67777754332  45667888899999987

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.69  E-value=6.7e-15  Score=125.32  Aligned_cols=287  Identities=14%  Similarity=0.165  Sum_probs=187.5

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-----eeecccCcC------------CCEEEEEeeCCC-CCeEEEE
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-----CTGALMGHT------------GSIKSLCSHPTN-SDILVSG  169 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~-~~~l~s~  169 (512)
                      .+-|.++.|...|.+|++|..+|.|.++.-+...     ....++.|.            ..|+.+.|.+++ ...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3578899999999999999999999999643321     223333333            468889998765 3467777


Q ss_pred             eCCCcEEEEeCCCCCCCCCccc------cceeeecccc---cccccccccccceecccccccEEEEEEeecCCEEEEEee
Q 010390          170 SRDGSFAIWDLRCKSSPKSNCA------ESFVFSSAVV---KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA  240 (512)
Q Consensus       170 ~~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~  240 (512)
                      +.|.+|++|.+...........      ...+.+....   +.........+..-..+|...|.++.++.|...++++  
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA--  182 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA--  182 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec--
Confidence            8899999999876654431100      0000000000   0000000111112335788899999999999999875  


Q ss_pred             cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCC----CceEeee
Q 010390          241 VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDK----GPIQHFS  315 (512)
Q Consensus       241 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~  315 (512)
                      +|-.|.+|++.-...........+.   .+.....-|++..|+|. .+.++-++..|+|++-|++....    ..+....
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~---nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPA---NMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             cceeeeeccccccCCceeEEEcccc---CHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence            6899999998754433322211111   23444456889999985 56778888999999999974211    0011111


Q ss_pred             e--------ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc------------CCe---EEEEeC
Q 010390          316 G--------CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD------------GEV---TAVNWC  372 (512)
Q Consensus       316 ~--------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~------------~~v---~~v~~~  372 (512)
                      .        ..+-..+..+.|+++|+++++-+. -+|++||++....++.++.-|.            +.|   .-++|+
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s  338 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS  338 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence            0        112234667999999999998754 5799999977666666666553            122   457899


Q ss_pred             CCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          373 PNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       373 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      -++ .+++||+....++++++..|.....
T Consensus       339 g~~-~~v~TGsy~n~frvf~~~~gsk~d~  366 (433)
T KOG1354|consen  339 GND-SYVMTGSYNNVFRVFNLARGSKEDF  366 (433)
T ss_pred             CCc-ceEecccccceEEEecCCCCcceee
Confidence            888 8999999999999999877765443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.5e-15  Score=144.14  Aligned_cols=223  Identities=15%  Similarity=0.143  Sum_probs=148.6

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCC---CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDED---GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      .+.+|...+.+++|   ||||+.||.++.+   ..|++||+.++..           ..+..+.+|.   ..++|+|||+
T Consensus       198 ~lt~~~~~v~~p~w---SPDG~~la~~s~~~~~~~i~i~dl~tg~~-----------~~l~~~~g~~---~~~~wSPDG~  260 (429)
T PRK01742        198 IVNRSSQPLMSPAW---SPDGSKLAYVSFENKKSQLVVHDLRSGAR-----------KVVASFRGHN---GAPAFSPDGS  260 (429)
T ss_pred             EeccCCCccccceE---cCCCCEEEEEEecCCCcEEEEEeCCCCce-----------EEEecCCCcc---CceeECCCCC
Confidence            34567778888888   9999999987643   3699999976532           2233344443   4689999999


Q ss_pred             EEEEEe-CCCcEEEE--eCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          122 NILTAS-GDQTIKIW--DAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       122 ~l~s~~-~dg~i~iw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      .|+.++ .+|.+.||  |+.+++. ..+..+...+....|+|++..+++++..+|...+|++........          
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~----------  329 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS----------  329 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE----------
Confidence            998764 67766555  6666554 445556777889999999844455555678899998754321110          


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                      .. .+..  .+..|+|+++.+++++. ++ +.+||+.++......           ..  ....
T Consensus       330 ----------------~l-~~~~--~~~~~SpDG~~ia~~~~-~~-i~~~Dl~~g~~~~lt-----------~~--~~~~  375 (429)
T PRK01742        330 ----------------LV-GGRG--YSAQISADGKTLVMING-DN-VVKQDLTSGSTEVLS-----------ST--FLDE  375 (429)
T ss_pred             ----------------Ee-cCCC--CCccCCCCCCEEEEEcC-CC-EEEEECCCCCeEEec-----------CC--CCCC
Confidence                            01 1111  35679999999988663 44 666999877543211           00  1234


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN  331 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  331 (512)
                      .+.|+|+|++|+.++.++.+.+|++..........+..+.  ..+...+|+|-
T Consensus       376 ~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~  426 (429)
T PRK01742        376 SPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY  426 (429)
T ss_pred             CceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence            6789999999999999999988887655555555555433  23445677764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=1.4e-14  Score=125.63  Aligned_cols=262  Identities=15%  Similarity=0.178  Sum_probs=193.2

Q ss_pred             CCCcEEEEEEecCCC--EEEEEeCCCcEEEEeCCCCeeeecc------cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390          107 HQNAIFDLCWIKEDT--NILTASGDQTIKIWDAEKKKCTGAL------MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus       107 h~~~V~~l~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~------~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      -...|..++|.-+++  .|+..+.|..+....+....+...+      ......|..+....   ..|++|-.+|.+.+|
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence            446788888876543  4555556777777777766554443      33455676666542   578888899999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC--CeEEEEeccCccce
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--SIVKFWDTRNLKAQ  256 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--g~i~iwd~~~~~~~  256 (512)
                      ....+..-..                       .. ....-...+..+.-++....++++|+..  ..+++||+...+.+
T Consensus       131 ~~k~~d~hss-----------------------~l-~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi  186 (412)
T KOG3881|consen  131 HDKSGDLHSS-----------------------KL-IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI  186 (412)
T ss_pred             eccCCccccc-----------------------cc-eeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceee
Confidence            9885442110                       00 1111224567777778888888888888  88999999988666


Q ss_pred             ecccCCCccccccccccccCeeEEEeCCC--CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE
Q 010390          257 ITQAWPHAESSSAKETRLHGISSLSQDSN--GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH  334 (512)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  334 (512)
                      +..........  ...-.-+++++.|-+.  ...|++++.-+.+++||.+. ...++..+...  +..++++...|.+++
T Consensus       187 w~aKNvpnD~L--~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~-qRRPV~~fd~~--E~~is~~~l~p~gn~  261 (412)
T KOG3881|consen  187 WSAKNVPNDRL--GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH-QRRPVAQFDFL--ENPISSTGLTPSGNF  261 (412)
T ss_pred             eeccCCCCccc--cceeeeeeccceecCCCCCceEEEEecceeEEEecCcc-cCcceeEeccc--cCcceeeeecCCCcE
Confidence            65443332110  1112235778888887  88999999999999999974 45666666544  456778899999999


Q ss_pred             EEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          335 ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       335 l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      |++|..-|.+..||++.++.....+.+-.+.|+++..+|.. .+|+++|-|..|||+|+++.+++..
T Consensus       262 Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  262 IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             EEEecccchhheecccCceeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccchhhhh
Confidence            99999999999999999888766788999999999999998 7999999999999999999776653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.67  E-value=9.1e-14  Score=128.75  Aligned_cols=293  Identities=10%  Similarity=0.090  Sum_probs=176.3

Q ss_pred             CcEEE-EeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           65 SHIFA-VSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        65 ~~~la-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      +++++ +-..+|.|.|.|..+.+.             +..+......-..+.|+|||+++++++.||.|.++|+.+++.+
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~-------------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v   71 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKV-------------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV   71 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SE-------------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeE-------------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE
Confidence            34554 446689999999877643             5555554444455789999999999999999999999999999


Q ss_pred             ecccCcCCCEEEEEeeCCCCCeEE-EEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390          144 GALMGHTGSIKSLCSHPTNSDILV-SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS  222 (512)
Q Consensus       144 ~~~~~h~~~v~~l~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (512)
                      .++... ....++++++++ ++++ +...++.+.++|.++.+..........                    ........
T Consensus        72 ~~i~~G-~~~~~i~~s~DG-~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~--------------------~~~~~~~R  129 (369)
T PF02239_consen   72 ATIKVG-GNPRGIAVSPDG-KYVYVANYEPGTVSVIDAETLEPVKTIPTGGM--------------------PVDGPESR  129 (369)
T ss_dssp             EEEE-S-SEEEEEEE--TT-TEEEEEEEETTEEEEEETTT--EEEEEE--EE---------------------TTTS---
T ss_pred             EEEecC-CCcceEEEcCCC-CEEEEEecCCCceeEeccccccceeecccccc--------------------cccccCCC
Confidence            998754 456789999999 5555 555789999999987665442211100                    00013346


Q ss_pred             EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEE
Q 010390          223 ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLY  301 (512)
Q Consensus       223 v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~  301 (512)
                      +..+..++....++++--+.+.|.+.|....+....          .............|+|++++++++ ..++.|-++
T Consensus       130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~----------~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi  199 (369)
T PF02239_consen  130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV----------TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI  199 (369)
T ss_dssp             EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE----------EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred             ceeEEecCCCCEEEEEEccCCeEEEEEeccccccce----------eeecccccccccccCcccceeeecccccceeEEE
Confidence            778888888887776654568888888776543322          122223446678999999987765 456678788


Q ss_pred             EcccCCCCce------------Eee----------eece----------------------------eceeEEEEEECCC
Q 010390          302 NVLQLDKGPI------------QHF----------SGCR----------------------------IESFYVKSEICPN  331 (512)
Q Consensus       302 d~~~~~~~~~------------~~~----------~~~~----------------------------~~~~~~~~~~s~~  331 (512)
                      |..+......            ..+          ..+.                            ....-.-+..+|+
T Consensus       200 D~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~  279 (369)
T PF02239_consen  200 DTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPD  279 (369)
T ss_dssp             ETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT
T ss_pred             eeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCC
Confidence            8543211100            000          0000                            0000012456899


Q ss_pred             CCEEEEe----cCCCCEEEEecCCCCCCCceec-cccCCeEEEEeCCCCCCeEEEEeCCC-cEEEEeCCCCccccccc
Q 010390          332 ASHILSG----SSDGNAYVWQVNKPQADPIKLK-SHDGEVTAVNWCPNEAGKIVTSSDDY-TVRLWSLENSRCSSMRS  403 (512)
Q Consensus       332 ~~~l~~g----~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~  403 (512)
                      ++++.+.    ...+.|.++|.++.+.. ..+. +-...+..+.|+++|....+|...++ .|.+||..+.+.+....
T Consensus       280 s~~vwvd~~~~~~~~~v~viD~~tl~~~-~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  280 SRYVWVDTFLNPDADTVQVIDKKTLKVV-KTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             -SEEEEE-TT-SSHT-EEEEECCGTEEE-E-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CccEEeeccCCCCCceEEEEECcCccee-EEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            9999887    44588999999887442 2222 22235999999999965566665555 89999999998777543

...

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.66  E-value=2.2e-16  Score=139.36  Aligned_cols=272  Identities=17%  Similarity=0.218  Sum_probs=194.6

Q ss_pred             hhhcccceeeecCcccccccccCCCCCC---------ceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEE
Q 010390            8 SFFLNVRSRELNGFKARKRPYFGDVVTD---------FTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVS   78 (512)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~   78 (512)
                      .....+++.+|++|..++.--......+         +-....|.+++. -...|..|.|   -.+.+++|++- ...+.
T Consensus       120 ~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~---LHneq~~AVAQ-K~y~y  194 (545)
T KOG1272|consen  120 TKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTF---LHNEQFFAVAQ-KKYVY  194 (545)
T ss_pred             HhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhh---hcchHHHHhhh-hceEE
Confidence            3344577788888888665544443322         222223333332 2455777888   66788898886 56899


Q ss_pred             EEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEe
Q 010390           79 LFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCS  158 (512)
Q Consensus        79 iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~  158 (512)
                      |||-..-              ++..++.| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-
T Consensus       195 vYD~~Gt--------------ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q  259 (545)
T KOG1272|consen  195 VYDNNGT--------------ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ  259 (545)
T ss_pred             EecCCCc--------------EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence            9996542              24445544 67999999999989999999999999999999999999988899999999


Q ss_pred             eCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE
Q 010390          159 HPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA  238 (512)
Q Consensus       159 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  238 (512)
                      +|-+ ..+-+|...|+|.+|.....+.+.                           .+..|.++|.++++.++|.+++++
T Consensus       260 NP~N-aVih~GhsnGtVSlWSP~skePLv---------------------------KiLcH~g~V~siAv~~~G~YMaTt  311 (545)
T KOG1272|consen  260 NPYN-AVIHLGHSNGTVSLWSPNSKEPLV---------------------------KILCHRGPVSSIAVDRGGRYMATT  311 (545)
T ss_pred             CCcc-ceEEEcCCCceEEecCCCCcchHH---------------------------HHHhcCCCcceEEECCCCcEEeec
Confidence            9987 899999999999999987654332                           566889999999999999999998


Q ss_pred             eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc-cCCCCceEeeeec
Q 010390          239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL-QLDKGPIQHFSGC  317 (512)
Q Consensus       239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~  317 (512)
                      | .|..++|||+++...+.+...            ..+...+++|..|  +++.+....+.+|.=. .........+..|
T Consensus       312 G-~Dr~~kIWDlR~~~ql~t~~t------------p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H  376 (545)
T KOG1272|consen  312 G-LDRKVKIWDLRNFYQLHTYRT------------PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNH  376 (545)
T ss_pred             c-cccceeEeeeccccccceeec------------CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhh
Confidence            8 799999999998876554322            2446677887655  4445566688999632 2111222233344


Q ss_pred             eeceeEEEEEECCCCCEEEEecCCC
Q 010390          318 RIESFYVKSEICPNASHILSGSSDG  342 (512)
Q Consensus       318 ~~~~~~~~~~~s~~~~~l~~g~~dg  342 (512)
                      .....|..+.|.|-...|-.|...|
T Consensus       377 ~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  377 RCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             ccCcccccceeccHHHeeeccccCC
Confidence            4445666677777666665555444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2.6e-14  Score=137.38  Aligned_cols=236  Identities=16%  Similarity=0.123  Sum_probs=153.8

Q ss_pred             CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeeecccCcCC
Q 010390           75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEKKKCTGALMGHTG  151 (512)
Q Consensus        75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~  151 (512)
                      ..|.+||.....              .+.+..|...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+
T Consensus       184 ~~l~i~D~~g~~--------------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g  248 (433)
T PRK04922        184 YALQVADSDGYN--------------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG  248 (433)
T ss_pred             EEEEEECCCCCC--------------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC
Confidence            368899986432              33455677889999999999999977643   469999998876543 333344


Q ss_pred             CEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390          152 SIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL  229 (512)
Q Consensus       152 ~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  229 (512)
                      ...+..|+|++..++++.+.+|  .|.+||+.+++...                            +..+........|+
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----------------------------lt~~~~~~~~~~~s  300 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----------------------------LTNHFGIDTEPTWA  300 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----------------------------CccCCCCccceEEC
Confidence            5567899999955556666666  58889987654211                            11222344668999


Q ss_pred             ecCCEEEEEeecCCe--EEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC---eEEEEEcc
Q 010390          230 KDEVSIATASAVNSI--VKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH---RIYLYNVL  304 (512)
Q Consensus       230 ~~~~~l~~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~  304 (512)
                      |+++.+++++..+|.  |+++|+.+++....            ..........+|+|+|++++..+.++   .|.+||+.
T Consensus       301 pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l------------t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        301 PDGKSIYFTSDRGGRPQIYRVAASGGSAERL------------TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             CCCCEEEEEECCCCCceEEEEECCCCCeEEe------------ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence            999999887655554  66666665543211            11112344689999999998765443   69999986


Q ss_pred             cCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390          305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP  373 (512)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~  373 (512)
                      +....   .+....   ......|+|||++|+..+.+   +.|.++++....  ...+..+.+.+...+|+|
T Consensus       369 ~g~~~---~Lt~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~--~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        369 TGSVR---TLTPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV--RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCCeE---ECCCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc--eEEcccCCCCCCCCccCC
Confidence            54322   222111   12246899999988766553   357777775432  244555567788888887

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.1e-14  Score=123.21  Aligned_cols=266  Identities=11%  Similarity=0.138  Sum_probs=167.5

Q ss_pred             CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390          151 GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK  230 (512)
Q Consensus       151 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  230 (512)
                      ..+..++|++.- ..++++..|-.|++||-.... ....                          .......|+|++|-|
T Consensus        99 ~dlr~~aWhqH~-~~fava~nddvVriy~ksst~-pt~L--------------------------ks~sQrnvtclawRP  150 (445)
T KOG2139|consen   99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSSTC-PTKL--------------------------KSVSQRNVTCLAWRP  150 (445)
T ss_pred             cceeeEeechhh-hhhhhhccCcEEEEeccCCCC-Ccee--------------------------cchhhcceeEEEecc
Confidence            467889999865 778999999999999977522 2111                          112245799999999


Q ss_pred             cCCEEEEEeecCCeEEEEeccCccceeccc---CCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccC
Q 010390          231 DEVSIATASAVNSIVKFWDTRNLKAQITQA---WPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQL  306 (512)
Q Consensus       231 ~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  306 (512)
                      .+...++.|+ .+.|.+|............   ..+........+| ..|++|.|.+||..+++++ .|..|.|||..++
T Consensus       151 lsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg  228 (445)
T KOG2139|consen  151 LSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG  228 (445)
T ss_pred             CCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC
Confidence            8776666675 5669999876432222111   1111111122333 6799999999999999888 5578999999887


Q ss_pred             CCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390          307 DKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY  386 (512)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg  386 (512)
                      ...++......    .+.-+.||||+.+|++++-|+..++|+............ ..+.|....|+|+|..+|++++..-
T Consensus       229 ~~~pL~~~glg----g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp  303 (445)
T KOG2139|consen  229 QKIPLIPKGLG----GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSP  303 (445)
T ss_pred             CcccccccCCC----ceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCc
Confidence            77766633332    244589999999999999999999996654433222222 3458999999999976777777665


Q ss_pred             cEEEEeCCCCcccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCC
Q 010390          387 TVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPK  454 (512)
Q Consensus       387 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  454 (512)
                      .++--.+.....+. ..+...+.........++ .+.+......... +.++|+|.|.++++......
T Consensus       304 ~lysl~f~~~~~~~-~~~~~~k~~lliaDL~e~-ti~ag~~l~cgea-q~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  304 RLYSLTFDGEDSVF-LRPQSIKRVLLIADLQEV-TICAGQRLCCGEA-QCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             eEEEEeecCCCccc-cCcccceeeeeeccchhh-hhhcCcccccCcc-ceeeECCCCCEEEEEEcCCc
Confidence            55444443322221 113322222111111111 1111111122222 27899999999998765554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=7.9e-14  Score=134.29  Aligned_cols=235  Identities=13%  Similarity=0.098  Sum_probs=154.0

Q ss_pred             CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCeeeecccCcCC
Q 010390           75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---DQTIKIWDAEKKKCTGALMGHTG  151 (512)
Q Consensus        75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~h~~  151 (512)
                      ..|.++|.++..              .+.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+
T Consensus       182 ~~l~~~d~dg~~--------------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g  246 (435)
T PRK05137        182 KRLAIMDQDGAN--------------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG  246 (435)
T ss_pred             eEEEEECCCCCC--------------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC
Confidence            368888875442              3445678889999999999999987654   468999999888653 3444566


Q ss_pred             CEEEEEeeCCCCCeEEEEeCCCc--EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390          152 SIKSLCSHPTNSDILVSGSRDGS--FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL  229 (512)
Q Consensus       152 ~v~~l~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  229 (512)
                      .+.+.+|+|++..++++.+.++.  |.+||+.++...                            .+..+........|+
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----------------------------~Lt~~~~~~~~~~~s  298 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----------------------------RLTDSPAIDTSPSYS  298 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----------------------------EccCCCCccCceeEc
Confidence            77889999999555567776665  666787655321                            112233345678999


Q ss_pred             ecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcc
Q 010390          230 KDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVL  304 (512)
Q Consensus       230 ~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~  304 (512)
                      |+++.++.++..+|  .|+++|+..+....            .......+....|+|+|+.|+....+   ..|.+||+.
T Consensus       299 pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~------------lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        299 PDGSQIVFESDRSGSPQLYVMNADGSNPRR------------ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             CCCCEEEEEECCCCCCeEEEEECCCCCeEE------------eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence            99999987664444  67788876654322            11122345678899999999877643   368888874


Q ss_pred             cCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC------CCEEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390          305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD------GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP  373 (512)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~  373 (512)
                      ...   ...+...   ..+....|+|||++|+..+.+      ..++++++.....  ..+. ..+.+...+|+|
T Consensus       367 ~~~---~~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~--~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        367 GSG---ERILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE--REVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCc---eEeccCC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce--EEcc-CCCCccCcccCC
Confidence            422   1222211   123457899999998765432      2577778765543  2332 244567778876

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.65  E-value=4.6e-15  Score=121.70  Aligned_cols=288  Identities=13%  Similarity=0.154  Sum_probs=182.1

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      +...++.|.+.|+++.|-.++ +|.+|..-|.|++|++++......++ .|...|+.+.-.|.  ..+.+-+.|+.+.+|
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILW   82 (323)
T ss_pred             CeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceEEEE
Confidence            356677999999999998765 49999999999999999998888888 56778999988885  468899999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec-----CC---EEEEEeecCC-eEEEEe
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD-----EV---SIATASAVNS-IVKFWD  249 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~---~l~~~g~~dg-~i~iwd  249 (512)
                      ++.......                              .|.-.++++.|.+.     .+   .++..-++.. .+.+-|
T Consensus        83 ~ia~s~~i~------------------------------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D  132 (323)
T KOG0322|consen   83 TIAYSAFIS------------------------------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD  132 (323)
T ss_pred             EccCcceEE------------------------------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence            997543221                              11122333333321     10   1111000000 011111


Q ss_pred             ccCccceecccCCCccccccccccccCeeEEEeCC-CC--CEEEEEecCCeEEEEEcccCCCCc------eEeeeeceec
Q 010390          250 TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NG--VFLTASCMDHRIYLYNVLQLDKGP------IQHFSGCRIE  320 (512)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~  320 (512)
                      ......+..  .+.     ......+.+.+..+.. ++  -+|++|..+|.+.+||+.......      ..........
T Consensus       133 ~g~~tqv~i--~dd-----~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~  205 (323)
T KOG0322|consen  133 GGDTTQVQI--ADD-----SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK  205 (323)
T ss_pred             cCccceeEc--cCc-----hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc
Confidence            111111110  000     2233445677776543 22  256678899999999997642110      1111222344


Q ss_pred             eeEEEEEECCCCCEEEEecCCCCEEEEecCCCC--CCCc-eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          321 SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ--ADPI-KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       321 ~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~--~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ..+.++.|.+.-..=++|+.+..+..|+++...  ..+. ...-..-.|..+..-||+ +.+||+|.|+.||||+.++..
T Consensus       206 qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~  284 (323)
T KOG0322|consen  206 QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLN  284 (323)
T ss_pred             CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCC
Confidence            567778888765566778888889999887542  2211 122223468899999999 999999999999999999988


Q ss_pred             ccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCC
Q 010390          398 CSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDP  453 (512)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  453 (512)
                      .+.++..                    +.    ..++ +++|+||-.+++.++...
T Consensus       285 pLAVLky--------------------Hs----agvn-~vAfspd~~lmAaaskD~  315 (323)
T KOG0322|consen  285 PLAVLKY--------------------HS----AGVN-AVAFSPDCELMAAASKDA  315 (323)
T ss_pred             chhhhhh--------------------hh----ccee-EEEeCCCCchhhhccCCc
Confidence            7776332                    11    2223 778888877777776544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.64  E-value=1.3e-13  Score=116.81  Aligned_cols=297  Identities=13%  Similarity=0.171  Sum_probs=181.9

Q ss_pred             EEEEecCCCcEE-EEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEE
Q 010390           57 SFCKTSKNSHIF-AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKI  134 (512)
Q Consensus        57 ~~~~~s~~~~~l-atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~i  134 (512)
                      .+..|..|..++ ...+.|+.|.+|++...+-             ...+.....++.+++|||||+.|+ +...|-.|.|
T Consensus        52 ~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-------------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTV  118 (447)
T KOG4497|consen   52 VYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-------------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITV  118 (447)
T ss_pred             hheeeeccceeeeeeeeccceEEEEEeeccee-------------EEEeccCCCcceeeeECCCcceEeeeecceeEEEE
Confidence            333447777654 4558899999999865432             455667778999999999997766 6666889999


Q ss_pred             EeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE--------E------eCCCCCCCCCccccceeeeccc
Q 010390          135 WDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI--------W------DLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       135 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v--------w------d~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      |.+.+.+... ++..+..+..++|+|++ ++.+.++.-.....        |      ++.+-...          ....
T Consensus       119 WSL~t~~~~~-~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt----------gieW  186 (447)
T KOG4497|consen  119 WSLNTQKGYL-LPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT----------GIEW  186 (447)
T ss_pred             EEeccceeEE-ecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc----------CceE
Confidence            9998877654 33334567889999988 66666554211111        1      11111100          0011


Q ss_pred             cccccccccccccee----cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc-----------------
Q 010390          201 VKGAHLLSQSKRVSR----RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ-----------------  259 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~-----------------  259 (512)
                      .+++...........    ...-.-.+..++|+|.++.+++ |+.|+.+++.+--+.+.....                 
T Consensus       187 sPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflav-GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke  265 (447)
T KOG4497|consen  187 SPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAV-GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE  265 (447)
T ss_pred             CCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEe-eccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence            111111111111000    1112246888999999988887 778998887543221111000                 


Q ss_pred             ------------cCCCc--------------------------cccccccccccCeeEEEeCCCCCEEEEEecC--CeEE
Q 010390          260 ------------AWPHA--------------------------ESSSAKETRLHGISSLSQDSNGVFLTASCMD--HRIY  299 (512)
Q Consensus       260 ------------~~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~  299 (512)
                                  ..+..                          .+........-++.-++|++|..++++-...  +.+.
T Consensus       266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW  345 (447)
T KOG4497|consen  266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALW  345 (447)
T ss_pred             hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEE
Confidence                        00000                          0111222334557789999999999887543  7899


Q ss_pred             EEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeE
Q 010390          300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKI  379 (512)
Q Consensus       300 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l  379 (512)
                      +||++..+...+..-     ...+....|+|....|+.+.....+++|........  ...+..-.|..+.|..+| ..+
T Consensus       346 ~Wdlq~l~l~avLiQ-----k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V--~vP~~GF~i~~l~W~~~g-~~i  417 (447)
T KOG4497|consen  346 LWDLQNLKLHAVLIQ-----KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV--GVPKKGFNIQKLQWLQPG-EFI  417 (447)
T ss_pred             EEechhhhhhhhhhh-----ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE--ecCCCCceeeeEEecCCC-cEE
Confidence            999976433222211     234677899999888888777778999988764332  222233579999999999 788


Q ss_pred             EEEeCCCc
Q 010390          380 VTSSDDYT  387 (512)
Q Consensus       380 ~s~~~dg~  387 (512)
                      +-.+.|.-
T Consensus       418 ~l~~kDaf  425 (447)
T KOG4497|consen  418 VLCGKDAF  425 (447)
T ss_pred             EEEcCCce
Confidence            88888863

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=1.5e-13  Score=116.12  Aligned_cols=241  Identities=13%  Similarity=0.188  Sum_probs=158.2

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCC--EEEEEeeCCCCCeEEEEeCC------CcEEEEeCC
Q 010390          110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGS--IKSLCSHPTNSDILVSGSRD------GSFAIWDLR  181 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~  181 (512)
                      ...+++|+.|...++.|..+| .+||+.+--+....-+.+.+.  +..+-|-. + .+.+.|+.+      ..|.|||=.
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~-N-~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS-N-YLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh-c-eEEEecCCCCCCCCCceEEEEecc
Confidence            344599999999999998888 899998764443333222222  22232322 1 333344433      479999933


Q ss_pred             CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceeccc
Q 010390          182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQA  260 (512)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~  260 (512)
                      ...+...                            .....+|.++.+.++.  ++++  ..+.|++|...+ .+......
T Consensus        84 k~~~i~e----------------------------l~f~~~I~~V~l~r~r--iVvv--l~~~I~VytF~~n~k~l~~~e  131 (346)
T KOG2111|consen   84 KERCIIE----------------------------LSFNSEIKAVKLRRDR--IVVV--LENKIYVYTFPDNPKLLHVIE  131 (346)
T ss_pred             cCcEEEE----------------------------EEeccceeeEEEcCCe--EEEE--ecCeEEEEEcCCChhheeeee
Confidence            2222211                            1234578888887663  4433  488999999884 33333221


Q ss_pred             CCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec
Q 010390          261 WPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS  339 (512)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  339 (512)
                               ......+..+++-..+..+|+.- -.-|.|+|-|+......+...+..|.  +.+.+++.+.+|..+|+++
T Consensus       132 ---------t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaS  200 (346)
T KOG2111|consen  132 ---------TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHD--SDIACVALNLQGTLVATAS  200 (346)
T ss_pred             ---------cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEec
Confidence                     11112234444444444555543 35699999999776554445555554  5588899999999999999


Q ss_pred             CCCC-EEEEecCCCCCCCceeccc-cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          340 SDGN-AYVWQVNKPQADPIKLKSH-DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       340 ~dg~-i~iw~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ..|+ |||||..++......-+|- ...|.+++|+|+. .+|+.+|+-|+|+|+.+....
T Consensus       201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCC
Confidence            9998 8999999988743322332 3579999999999 899999999999999998754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=6.7e-14  Score=134.06  Aligned_cols=225  Identities=17%  Similarity=0.184  Sum_probs=143.0

Q ss_pred             ccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          103 DWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       103 ~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      .+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+.+..|+|++..++++.+.+|...+|.
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            345677889999999999999876643   459999999886543 3333455678899999954555778888877776


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc--Ccccee
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NLKAQI  257 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~~~~~  257 (512)
                      ++.....                          ...+..+........|+|||+.++.++..+|...+|.+.  ++....
T Consensus       269 ~d~~~~~--------------------------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~  322 (427)
T PRK02889        269 VNADGSG--------------------------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR  322 (427)
T ss_pred             EECCCCC--------------------------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence            5421100                          011122233455678999999998766555666666554  332211


Q ss_pred             cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC---eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH---RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH  334 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  334 (512)
                                  ............|+|+|++|+..+.++   .|.+||+......   .+....   ......|+|||++
T Consensus       323 ------------lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~---~lt~~~---~~~~p~~spdg~~  384 (427)
T PRK02889        323 ------------VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT---ALTDTT---RDESPSFAPNGRY  384 (427)
T ss_pred             ------------EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE---EccCCC---CccCceECCCCCE
Confidence                        111112234578999999998777554   6999998664322   222111   1234789999999


Q ss_pred             EEEecCCC-C--EEEEecCCCCCCCceeccccCCeEEEEeCCC
Q 010390          335 ILSGSSDG-N--AYVWQVNKPQADPIKLKSHDGEVTAVNWCPN  374 (512)
Q Consensus       335 l~~g~~dg-~--i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~  374 (512)
                      |+..+.++ .  +++.++.. .. ...+..+.+.+...+|+|-
T Consensus       385 l~~~~~~~g~~~l~~~~~~g-~~-~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        385 ILYATQQGGRSVLAAVSSDG-RI-KQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEEEEecCCCEEEEEEECCC-Cc-eEEeecCCCCCCCCccCCC
Confidence            87766543 3  55555533 22 3445556777888899874

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.62  E-value=9.6e-14  Score=125.20  Aligned_cols=193  Identities=11%  Similarity=0.159  Sum_probs=133.2

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeeeeccc----CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc---
Q 010390          118 KEDTNILTASGDQTIKIWDAEKKKCTGALM----GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC---  190 (512)
Q Consensus       118 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---  190 (512)
                      |.+--|+.|-.-|.|.+.|....+....+.    -.+..|+|+.|-|.+..+++.+-.+|.+.+||...........   
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            466678888888999999876633222221    1346899999999888899999999999999874222111110   


Q ss_pred             -ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390          191 -AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA  269 (512)
Q Consensus       191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  269 (512)
                       .+.-.+.....+...   ....+..+....+.|...+|+|||++|++++ .||.++|||..+.+..-           .
T Consensus       263 ~k~~~~f~i~t~ksk~---~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eLlg-----------~  327 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKK---TRNPVARWHIGEGSINEFAFSPDGKYLATVS-QDGFLRIFDFDTQELLG-----------V  327 (636)
T ss_pred             cCCCCeeEEeeeeccc---cCCccceeEeccccccceeEcCCCceEEEEe-cCceEEEeeccHHHHHH-----------H
Confidence             000011111111000   1122334445566899999999999999977 89999999999876654           3


Q ss_pred             ccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC
Q 010390          270 KETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC  329 (512)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  329 (512)
                      ....-++..|++|+|||+++++|+.|.-|.||.+..    ......++.+.++|..++|+
T Consensus       328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e----rRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE----RRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             HHhhccceEEEEEcCCccEEEecCCcceEEEEEecc----ceEEEeccccccceeeEeec
Confidence            445557899999999999999999999999999854    23344555556788888887

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=2.2e-13  Score=123.86  Aligned_cols=293  Identities=11%  Similarity=0.136  Sum_probs=194.6

Q ss_pred             ecCCccCCcceEEEEEecCCCcE-EEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC--CcEEEEEEecCCC
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHI-FAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ--NAIFDLCWIKEDT  121 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~-latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~s~~~~  121 (512)
                      +-.+|....+.|..   +|||+| +|+|.....|++||+.....               .+..|.  ..|.-.-.+.|-.
T Consensus        46 Qdfe~p~ast~ik~---s~DGqY~lAtG~YKP~ikvydlanLSL---------------KFERhlDae~V~feiLsDD~S  107 (703)
T KOG2321|consen   46 QDFEMPTASTRIKV---SPDGQYLLATGTYKPQIKVYDLANLSL---------------KFERHLDAEVVDFEILSDDYS  107 (703)
T ss_pred             HhcCCccccceeEe---cCCCcEEEEecccCCceEEEEccccee---------------eeeecccccceeEEEeccchh
Confidence            33468888899999   999995 67788999999999976532               233332  3344444444555


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeee-cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTG-ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      .++.-..|.+|.+-.- -|.... .+.   ..-..++++.-...++ .++....|.-++++.+.-+.             
T Consensus       108 K~v~L~~DR~IefHak-~G~hy~~RIP---~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~-------------  169 (703)
T KOG2321|consen  108 KSVFLQNDRTIEFHAK-YGRHYRTRIP---KFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLN-------------  169 (703)
T ss_pred             hheEeecCceeeehhh-cCeeeeeecC---cCCccccccCCCccEE-EeecCcceEEEEcccccccc-------------
Confidence            5665667777776542 232111 111   1233455554442344 44444578888888766444             


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                    .+....+.++++..++....+++ |+.+|.|..||.+.........................|+++
T Consensus       170 --------------P~~~~~~~lN~v~in~~hgLla~-Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal  234 (703)
T KOG2321|consen  170 --------------PFETDSGELNVVSINEEHGLLAC-GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL  234 (703)
T ss_pred             --------------ccccccccceeeeecCccceEEe-cccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence                          33334468899999887766655 778999999999987765544333321111223333459999


Q ss_pred             EeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC--CCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          281 SQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN--ASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      .|+.+|-.+++|..+|.+.|||++...  ++ ....|.....+..+.|.+.  ++.+++. +...++|||-.+++.. ..
T Consensus       235 ~F~d~gL~~aVGts~G~v~iyDLRa~~--pl-~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~-as  309 (703)
T KOG2321|consen  235 KFRDDGLHVAVGTSTGSVLIYDLRASK--PL-LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPM-AS  309 (703)
T ss_pred             EecCCceeEEeeccCCcEEEEEcccCC--ce-eecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCce-ee
Confidence            999999999999999999999998743  22 2234555667788888765  3445554 3567999999988764 23


Q ss_pred             eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      . .....++.+++-|++ .+++++-.++.+..|=+..
T Consensus       310 i-Ept~~lND~C~~p~s-Gm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  310 I-EPTSDLNDFCFVPGS-GMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             c-cccCCcCceeeecCC-ceEEEecCCCcceeEEccc
Confidence            3 334569999999998 8999999988887776554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=9.7e-14  Score=126.16  Aligned_cols=256  Identities=12%  Similarity=0.109  Sum_probs=173.8

Q ss_pred             cCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          106 AHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      .|...-+.|..+|||+|++ +|..--.|++||+.+-.+.  +..|. ..+..+....++-..++--..|.+|-+...-..
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~  126 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR  126 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence            5778899999999999976 7777889999999876443  33332 233333333333245555566777765432211


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      ...                              ......-.+++++.-..-++++| ....|+-+++..++-+.      
T Consensus       127 hy~------------------------------~RIP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~------  169 (703)
T KOG2321|consen  127 HYR------------------------------TRIPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLN------  169 (703)
T ss_pred             eee------------------------------eecCcCCccccccCCCccEEEee-cCcceEEEEcccccccc------
Confidence            000                              00112345666766555566655 46778888988887654      


Q ss_pred             ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee-------eceeceeEEEEEECCCCCEEE
Q 010390          264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS-------GCRIESFYVKSEICPNASHIL  336 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~~~~l~  336 (512)
                           .+......++++..++...+|++|+.+|.|..||.+...........       +......++++.|+.+|-.++
T Consensus       170 -----P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~a  244 (703)
T KOG2321|consen  170 -----PFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVA  244 (703)
T ss_pred             -----ccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEE
Confidence                 24444578999999999999999999999999998764432222221       122233488899999999999


Q ss_pred             EecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCc
Q 010390          337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPS  405 (512)
Q Consensus       337 ~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  405 (512)
                      +|+.+|.|.|||++..+.....-.+..-+|..+.|.+.+.+--+...+...++|||-.+|+.....++.
T Consensus       245 VGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt  313 (703)
T KOG2321|consen  245 VGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT  313 (703)
T ss_pred             eeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc
Confidence            999999999999999877544444446689999998764233333344578999999999977665553

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=2.8e-12  Score=116.69  Aligned_cols=296  Identities=15%  Similarity=0.203  Sum_probs=181.4

Q ss_pred             ecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE-----eCC-----C
Q 010390           61 TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA-----SGD-----Q  130 (512)
Q Consensus        61 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-----~~d-----g  130 (512)
                      +|++|+++|.+. +..++|++......             +.+..  ...++++.|+|.+.+|.+=     ..+     -
T Consensus        42 ~S~~G~lfA~~~-~~~v~i~~~~~~~~-------------~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p  105 (566)
T KOG2315|consen   42 YSNNGRLFAYSD-NQVVKVFEIATLKV-------------VLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNP  105 (566)
T ss_pred             EcCCCcEEEEEc-CCeEEEEEccCCcE-------------EEEec--cceeeeeeecccccccccccccccccCCCCCCC
Confidence            399999999876 56899999876531             11111  1278999999999998862     112     3


Q ss_pred             cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc-----
Q 010390          131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH-----  205 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----  205 (512)
                      .+++|+++++.....++.....-++..|+.+. . +++--..+.+.+|++.+.+..........+....+.++..     
T Consensus       106 n~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dE-s-l~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vA  183 (566)
T KOG2315|consen  106 NVLVYNVETGVQRSQIQKKMQNGWVPQFSIDE-S-LAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVA  183 (566)
T ss_pred             ceeeeeeccceehhheehhhhcCcccccccch-h-hhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEE
Confidence            47799999976666565444444788999876 3 3333344689999987644332211111111111111100     


Q ss_pred             -------cccccccceec------------ccccccEEEEEEeecCCEEEEEe--ecC---------CeEEEEeccCccc
Q 010390          206 -------LLSQSKRVSRR------------KAASMSITSVLYLKDEVSIATAS--AVN---------SIVKFWDTRNLKA  255 (512)
Q Consensus       206 -------~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~~~g--~~d---------g~i~iwd~~~~~~  255 (512)
                             -.+..-++...            .-....-..+.|++-+..|++..  .-|         ..+++.++.....
T Consensus       184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~  263 (566)
T KOG2315|consen  184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV  263 (566)
T ss_pred             EEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence                   00000000000            00112233566777666544322  222         3577777773333


Q ss_pred             eecccCCCccccccccccccCeeEEEeCCCCCEEEE--EecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390          256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTA--SCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  333 (512)
                      .            ......++|.++.|+++++-+++  |-+--.+.|||++.   .++..+....    -.++-|+|.|+
T Consensus       264 ~------------V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---~~v~df~egp----RN~~~fnp~g~  324 (566)
T KOG2315|consen  264 S------------VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---KPVFDFPEGP----RNTAFFNPHGN  324 (566)
T ss_pred             E------------EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---CEeEeCCCCC----ccceEECCCCC
Confidence            2            23344678999999999976554  44678999999853   4555554332    34588999999


Q ss_pred             EEEEecCC---CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC------CCcEEEEeCCCCc
Q 010390          334 HILSGSSD---GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD------DYTVRLWSLENSR  397 (512)
Q Consensus       334 ~l~~g~~d---g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~------dg~i~vwd~~~~~  397 (512)
                      +|+.++-+   |.|.|||+.+.++ +..+..-  .-+-+.|+||| .+++|+..      |+.++||+.....
T Consensus       325 ii~lAGFGNL~G~mEvwDv~n~K~-i~~~~a~--~tt~~eW~PdG-e~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  325 IILLAGFGNLPGDMEVWDVPNRKL-IAKFKAA--NTTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             EEEEeecCCCCCceEEEeccchhh-ccccccC--CceEEEEcCCC-cEEEEEeccccEEecCCeEEEEecCce
Confidence            99877654   7899999998554 4444433  34567899999 78887763      7889999986543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.57  E-value=1.5e-12  Score=108.88  Aligned_cols=273  Identities=15%  Similarity=0.187  Sum_probs=185.0

Q ss_pred             CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec---CCC-EEEEEeCCCcEEEEeCCCCeeeecccC
Q 010390           73 EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK---EDT-NILTASGDQTIKIWDAEKKKCTGALMG  148 (512)
Q Consensus        73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~  148 (512)
                      ..|.+.+|++...+..-          ...........+..+.|..   ++. .|+-+..+|.|.++..........+++
T Consensus        44 R~Gkl~Lys~~d~~~~~----------l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~  113 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSP----------LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG  113 (339)
T ss_pred             eccceEEEeecccccCc----------cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc
Confidence            45788999987654311          0111112346778888875   555 556777789999998765544444433


Q ss_pred             cC------CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390          149 HT------GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS  222 (512)
Q Consensus       149 h~------~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (512)
                      -.      ....++.|++.+ ..++++..+|.+.+-+......                         +....++.|+.+
T Consensus       114 ls~~ki~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~l-------------------------e~vq~wk~He~E  167 (339)
T KOG0280|consen  114 LSSKKISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVL-------------------------EKVQTWKVHEFE  167 (339)
T ss_pred             cchhhhhheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeee-------------------------eeccccccccee
Confidence            22      124567888877 6788888889888555443321                         223356788899


Q ss_pred             EEEEEEeecCCEEEEEeecCCeEEEEeccCcc-ceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEE
Q 010390          223 ITSVLYLKDEVSIATASAVNSIVKFWDTRNLK-AQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYL  300 (512)
Q Consensus       223 v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i  300 (512)
                      ..-..|+.....++.+|++|+.+..||++..+ .+..          ....|..+|.++.-+| .+.++++|+.|..|++
T Consensus       168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~----------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~  237 (339)
T KOG0280|consen  168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH----------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV  237 (339)
T ss_pred             eeeeecccCCCceEEecCCCceEEEEEecCCcceeee----------cceeeecceEEEecCCCCCceEEEeccccceee
Confidence            99999999888899899999999999999433 2222          3566778899988875 6789999999999999


Q ss_pred             EEcccCCCCceEeeeeceeceeEEEEEECCCC--CEEEEecCCCCEEEEecCCCCCC----CceeccccCCeEEEEeCCC
Q 010390          301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNA--SHILSGSSDGNAYVWQVNKPQAD----PIKLKSHDGEVTAVNWCPN  374 (512)
Q Consensus       301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~----~~~~~~h~~~v~~v~~~~~  374 (512)
                      ||.++..+.. .   .....+.+.++..+|.-  ..|+++-.+| .+|-+.+.....    ......|.+-+..-.|...
T Consensus       238 ~DtRnm~kPl-~---~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~  312 (339)
T KOG0280|consen  238 LDTRNMGKPL-F---KAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK  312 (339)
T ss_pred             eehhcccCcc-c---cCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc
Confidence            9998654322 2   22233568888888863  3455555555 777777655332    3345678888888889665


Q ss_pred             CCCeEEEEe-CCCcEE-EEeCCCCc
Q 010390          375 EAGKIVTSS-DDYTVR-LWSLENSR  397 (512)
Q Consensus       375 ~~~~l~s~~-~dg~i~-vwd~~~~~  397 (512)
                      . ..|+|++ .|+.++ +|-.-++.
T Consensus       313 ~-~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  313 D-SFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             c-ceeeeeeccccceeeeeeeccCC
Confidence            4 6889876 577755 77655543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.5e-12  Score=125.53  Aligned_cols=218  Identities=12%  Similarity=0.023  Sum_probs=141.3

Q ss_pred             CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC---CCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          130 QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR---DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      ..|.+||... .....+..|...+.+.+|+|++ +.|+..+.   +..|.+||+.+++..                    
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~--------------------  239 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE--------------------  239 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE--------------------
Confidence            4788999754 4445566678899999999998 66665543   468999999765421                    


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCe--EEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSI--VKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS  284 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (512)
                              .+..+.+.+....|+|+|+.++.+...++.  |++||+.++....            +..+........|+|
T Consensus       240 --------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~------------Lt~~~~~~~~~~~sp  299 (435)
T PRK05137        240 --------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR------------LTDSPAIDTSPSYSP  299 (435)
T ss_pred             --------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE------------ccCCCCccCceeEcC
Confidence                    111233456788999999998876655654  7777887765432            222333456789999


Q ss_pred             CCCEEEEEec-CC--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCCCCce
Q 010390          285 NGVFLTASCM-DH--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQADPIK  358 (512)
Q Consensus       285 ~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~  358 (512)
                      ||+.|+..+. +|  .|+++|+.....   ..+...  ...+....|+|+|++|+....+   ..|.+||+..+..  ..
T Consensus       300 DG~~i~f~s~~~g~~~Iy~~d~~g~~~---~~lt~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~  372 (435)
T PRK05137        300 DGSQIVFESDRSGSPQLYVMNADGSNP---RRISFG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RI  372 (435)
T ss_pred             CCCEEEEEECCCCCCeEEEEECCCCCe---EEeecC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--Ee
Confidence            9998887663 33  677888654322   222211  1223457899999999876543   3588888765433  22


Q ss_pred             eccccCCeEEEEeCCCCCCeEEEEeC-C-----CcEEEEeCCCCcc
Q 010390          359 LKSHDGEVTAVNWCPNEAGKIVTSSD-D-----YTVRLWSLENSRC  398 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~~l~s~~~-d-----g~i~vwd~~~~~~  398 (512)
                      +. ....+....|+||| +.|+..+. .     ..+.++|+..+..
T Consensus       373 lt-~~~~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        373 LT-SGFLVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             cc-CCCCCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCce
Confidence            22 22346788999999 66655443 2     2577888866543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.56  E-value=3.3e-13  Score=113.47  Aligned_cols=157  Identities=15%  Similarity=0.261  Sum_probs=107.1

Q ss_pred             EEEEEEeecCCEEEEEeec---------CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-
Q 010390          223 ITSVLYLKDEVSIATASAV---------NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-  292 (512)
Q Consensus       223 v~~~~~~~~~~~l~~~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  292 (512)
                      -..+.|+++|..|++....         -+...+|.++........         ......++|.+++|+|+|+.+++. 
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~---------i~l~~~~~I~~~~WsP~g~~favi~   78 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVES---------IELKKEGPIHDVAWSPNGNEFAVIY   78 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccce---------eeccCCCceEEEEECcCCCEEEEEE
Confidence            4568899999988775541         134555655433322211         112233569999999999987654 


Q ss_pred             -ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCCCCceeccccCCeEE
Q 010390          293 -CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQADPIKLKSHDGEVTA  368 (512)
Q Consensus       293 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~h~~~v~~  368 (512)
                       ..++.|.+||++   ...+..+..    .....+.|+|+|++|++++.+   |.|.+||+++.+.. ... .| ..++.
T Consensus        79 g~~~~~v~lyd~~---~~~i~~~~~----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-~~~-~~-~~~t~  148 (194)
T PF08662_consen   79 GSMPAKVTLYDVK---GKKIFSFGT----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-STF-EH-SDATD  148 (194)
T ss_pred             ccCCcccEEEcCc---ccEeEeecC----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-ecc-cc-CcEEE
Confidence             467899999985   344444433    234568999999999988743   66999999965542 222 23 45889


Q ss_pred             EEeCCCCCCeEEEEeC------CCcEEEEeCCCCcccc
Q 010390          369 VNWCPNEAGKIVTSSD------DYTVRLWSLENSRCSS  400 (512)
Q Consensus       369 v~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~  400 (512)
                      ++|+|+| ++|+++..      |+.++||++.. +++.
T Consensus       149 ~~WsPdG-r~~~ta~t~~r~~~dng~~Iw~~~G-~~l~  184 (194)
T PF08662_consen  149 VEWSPDG-RYLATATTSPRLRVDNGFKIWSFQG-RLLY  184 (194)
T ss_pred             EEEcCCC-CEEEEEEeccceeccccEEEEEecC-eEeE
Confidence            9999999 78887763      88999999964 4443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.56  E-value=1e-12  Score=112.23  Aligned_cols=255  Identities=12%  Similarity=0.146  Sum_probs=169.3

Q ss_pred             eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390           39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK  118 (512)
Q Consensus        39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~  118 (512)
                      ...++....||.+.|++...   -|-..-+.+.+.|.+++||--.+..+--           ......-..+++++.+.+
T Consensus        13 kp~ll~~~eG~~d~vn~~~l---~~~e~gv~~~s~drtvrv~lkrds~q~w-----------psI~~~mP~~~~~~~y~~   78 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAIL---IPKEEGVISVSEDRTVRVWLKRDSGQYW-----------PSIYHYMPSPCSAMEYVS   78 (404)
T ss_pred             chhhhhhhcCchhhhhhhee---ccCCCCeEEccccceeeeEEeccccccC-----------chhhhhCCCCceEeeeec
Confidence            34566778899999998887   4556678899999999999543321100           111122357899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCC----CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          119 EDTNILTASGDQTIKIWDAEK----KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      +...|+.|-..|++.-+.+..    ...++....|...|..+-|+... ..+++.+.|..+.---.+.+..+.....   
T Consensus        79 e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~---  154 (404)
T KOG1409|consen   79 ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF---  154 (404)
T ss_pred             cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe---
Confidence            999999999999999886643    34566677899999999998765 7899999997776544444432221100   


Q ss_pred             eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL  274 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  274 (512)
                                               ....+++.+.-.   .+..|...|.|.+-.+.........         .+.+|.
T Consensus       155 -------------------------~~~~t~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~---------~~~~h~  197 (404)
T KOG1409|consen  155 -------------------------ETPASALQFDAL---YAFVGDHSGQITMLKLEQNGCQLIT---------TFNGHT  197 (404)
T ss_pred             -------------------------eccCCCCceeeE---EEEecccccceEEEEEeecCCceEE---------EEcCcc
Confidence                                     000111111111   2223545555555444332221111         577888


Q ss_pred             cCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390          275 HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK  351 (512)
Q Consensus       275 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~  351 (512)
                      ..+.++.|.+....|.+|..|..+.+||+... ......+.++.  ..+..+.+-+.-+.+.+++.||.|.+|+++.
T Consensus       198 ~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~-~g~~~el~gh~--~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  198 GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR-KGTAYELQGHN--DKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cceEEEEEcCCCcEEEeccccCceEEEeccCC-cceeeeeccch--hhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            99999999999999999999999999998543 22333334433  2344455556677889999999999999863

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.54  E-value=2.6e-11  Score=112.88  Aligned_cols=259  Identities=9%  Similarity=0.093  Sum_probs=161.1

Q ss_pred             EEEEecCCCcEEEEeeC----CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-CCc
Q 010390           57 SFCKTSKNSHIFAVSDE----DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-DQT  131 (512)
Q Consensus        57 ~~~~~s~~~~~latg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~  131 (512)
                      +|..++|++++|.+...    +|.|..|++......         ...+............++++|++++|+++.. +|.
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~---------L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~  110 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT---------LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGS  110 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE---------EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce---------eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCe
Confidence            34444999999998866    578999988754111         1223333334456667999999999998875 899


Q ss_pred             EEEEeCCC-Ceeeec---c----------cCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceee
Q 010390          132 IKIWDAEK-KKCTGA---L----------MGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       132 i~iwd~~~-~~~~~~---~----------~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      |.++++.. +.....   +          +.......++.|+|++ +++++.. ....|.+|++.........       
T Consensus       111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~-------  182 (345)
T PF10282_consen  111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTP-------  182 (345)
T ss_dssp             EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEE-------
T ss_pred             EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEE-------
Confidence            99999976 433221   1          1123467899999998 5555543 3458999998765421100       


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc--CccceecccCCCccccccccccc
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NLKAQITQAWPHAESSSAKETRL  274 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~  274 (512)
                                     ..............+.|+|+++.++++...++.|.++++.  ++............   ......
T Consensus       183 ---------------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~---~~~~~~  244 (345)
T PF10282_consen  183 ---------------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP---EGFTGE  244 (345)
T ss_dssp             ---------------EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE---TTSCSS
T ss_pred             ---------------eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc---cccccc
Confidence                           0001113345688999999999999988889999999998  33221111100000   001111


Q ss_pred             cCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeecee-ceeEEEEEECCCCCEEEEec-CCCCEEEEecCC
Q 010390          275 HGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCRI-ESFYVKSEICPNASHILSGS-SDGNAYVWQVNK  351 (512)
Q Consensus       275 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~~  351 (512)
                      .....++++|||++|+++. ..+.|.+|++..... .+........ ......++++|+|++|+++. .++.|.+|+++.
T Consensus       245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            2577899999999988877 557899999944222 2222222222 23467799999999998765 567899998753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.1e-12  Score=125.48  Aligned_cols=217  Identities=10%  Similarity=0.026  Sum_probs=135.0

Q ss_pred             ccCCcceEEEEEecCCCcEEEEee---CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSD---EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT  125 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  125 (512)
                      +...+.+.+|   ||||+.||..+   .+..|.+||+.+++.           ..+..+.++   +..+.|+|||+.|+.
T Consensus       197 ~~~~~~~p~w---SPDG~~la~~s~~~g~~~i~i~dl~~G~~-----------~~l~~~~~~---~~~~~~SPDG~~La~  259 (429)
T PRK03629        197 SPQPLMSPAW---SPDGSKLAYVTFESGRSALVIQTLANGAV-----------RQVASFPRH---NGAPAFSPDGSKLAF  259 (429)
T ss_pred             CCCceeeeEE---cCCCCEEEEEEecCCCcEEEEEECCCCCe-----------EEccCCCCC---cCCeEECCCCCEEEE
Confidence            4456777777   99999888753   345799999876642           223333333   456899999999885


Q ss_pred             E-eCCC--cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC-CCcEEEE--eCCCCCCCCCccccceeeecc
Q 010390          126 A-SGDQ--TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR-DGSFAIW--DLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       126 ~-~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vw--d~~~~~~~~~~~~~~~~~~~~  199 (512)
                      . +.+|  .|++||+.+++...... +...+....|+|++ +.|+..+. ++...+|  |+.++...             
T Consensus       260 ~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~-------------  324 (429)
T PRK03629        260 ALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQ-------------  324 (429)
T ss_pred             EEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeE-------------
Confidence            4 4444  58999998887654433 44567889999998 65555444 4555555  54433211             


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCe
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                     .+...........|+|+|+.++.++..++  .|.+||+.++.....            .. ....
T Consensus       325 ---------------~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L------------t~-~~~~  376 (429)
T PRK03629        325 ---------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL------------TD-TFLD  376 (429)
T ss_pred             ---------------EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe------------CC-CCCC
Confidence                           11112224556889999999988764443  588889887653321            11 1123


Q ss_pred             eEEEeCCCCCEEEEEecCCe---EEEEEcccCCCCceEeeeeceeceeEEEEEECC
Q 010390          278 SSLSQDSNGVFLTASCMDHR---IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP  330 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  330 (512)
                      ....|+|||++|+.++.++.   +.++++.   ......+..+.  ..+...+|+|
T Consensus       377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~---G~~~~~l~~~~--~~~~~p~Wsp  427 (429)
T PRK03629        377 ETPSIAPNGTMVIYSSSQGMGSVLNLVSTD---GRFKARLPATD--GQVKFPAWSP  427 (429)
T ss_pred             CCceECCCCCEEEEEEcCCCceEEEEEECC---CCCeEECccCC--CCcCCcccCC
Confidence            46789999999999887764   5556653   22333333322  2233456665

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.53  E-value=3e-12  Score=123.67  Aligned_cols=233  Identities=16%  Similarity=0.137  Sum_probs=145.5

Q ss_pred             cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeeecccCcCCC
Q 010390           76 YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEKKKCTGALMGHTGS  152 (512)
Q Consensus        76 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~  152 (512)
                      .|.++|.....              .+.+..+...+...+|+|||++|+.+..+   ..|++||+.+++... +..+.+.
T Consensus       171 ~l~~~d~~g~~--------------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~  235 (417)
T TIGR02800       171 ELQVADYDGAN--------------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGM  235 (417)
T ss_pred             eEEEEcCCCCC--------------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCC
Confidence            57777765432              33344566789999999999999977654   479999998886543 3335556


Q ss_pred             EEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390          153 IKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK  230 (512)
Q Consensus       153 v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  230 (512)
                      +.+++|+|++..++++.+.++  .|.+||+.++....                            +..+........|+|
T Consensus       236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----------------------------l~~~~~~~~~~~~s~  287 (417)
T TIGR02800       236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----------------------------LTNGPGIDTEPSWSP  287 (417)
T ss_pred             ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE----------------------------CCCCCCCCCCEEECC
Confidence            777899999844555655554  58888887543211                            111222344568999


Q ss_pred             cCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC---eEEEEEccc
Q 010390          231 DEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH---RIYLYNVLQ  305 (512)
Q Consensus       231 ~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~  305 (512)
                      +++.++.++..++  .|+++|+.+++...            ...+........|+|+|++++.++.++   .|.+||+..
T Consensus       288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~~------------l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       288 DGKSIAFTSDRGGSPQIYMMDADGGEVRR------------LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCEEE------------eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence            9999887664444  57777877654321            222234466789999999999888775   788999865


Q ss_pred             CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC---CEEEEecCCCCCCCceeccccCCeEEEEe
Q 010390          306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG---NAYVWQVNKPQADPIKLKSHDGEVTAVNW  371 (512)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iw~~~~~~~~~~~~~~h~~~v~~v~~  371 (512)
                      ..   ...+....   ......|+|++++|+..+.++   .+++.+......  ..+..+.+.+..++|
T Consensus       356 ~~---~~~l~~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~--~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       356 GG---ERVLTDTG---LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFR--ARLPLGNGDVREPAW  416 (417)
T ss_pred             CC---eEEccCCC---CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCcee--eECCCCCCCcCCCCC
Confidence            32   22222111   122358999999887776654   355555433221  233333444555444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.53  E-value=2.3e-11  Score=113.22  Aligned_cols=303  Identities=12%  Similarity=0.141  Sum_probs=179.2

Q ss_pred             EEEeeCC----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----CCcEEEEeCCC
Q 010390           68 FAVSDED----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----DQTIKIWDAEK  139 (512)
Q Consensus        68 latg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----dg~i~iwd~~~  139 (512)
                      +++|+..    +.|.+|+++.....+         ..+.. ..-......++++|++++|.+...    ++.|..|++..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l---------~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~   71 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTL---------TLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDP   71 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEE---------EEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEET
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCc---------eEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECC
Confidence            4455544    689999884432211         11222 123456677899999999998876    46899888765


Q ss_pred             C--e--eeecccCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccce
Q 010390          140 K--K--CTGALMGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVS  214 (512)
Q Consensus       140 ~--~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (512)
                      .  +  .+............++++|++ .+|+++. .+|.|.++++.....+..... ....            ......
T Consensus        72 ~~g~L~~~~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~-~~~~------------~g~g~~  137 (345)
T PF10282_consen   72 DTGTLTLLNSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQ-TVRH------------EGSGPN  137 (345)
T ss_dssp             TTTEEEEEEEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEE-EEES------------EEEESS
T ss_pred             CcceeEEeeeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeee-eccc------------CCCCCc
Confidence            3  3  333333234456679999998 5555554 589999999986422111100 0000            000000


Q ss_pred             ecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-
Q 010390          215 RRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-  293 (512)
Q Consensus       215 ~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  293 (512)
                      ..........++.++|++++++++......|.+|++...........      ........+...++|+|+++++++.. 
T Consensus       138 ~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~------~~~~~~G~GPRh~~f~pdg~~~Yv~~e  211 (345)
T PF10282_consen  138 PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD------SIKVPPGSGPRHLAFSPDGKYAYVVNE  211 (345)
T ss_dssp             TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE------EEECSTTSSEEEEEE-TTSSEEEEEET
T ss_pred             ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee------ccccccCCCCcEEEEcCCcCEEEEecC
Confidence            01122346788999999999998766667899999987652111100      01223345688999999999887665 


Q ss_pred             cCCeEEEEEcccCCC--CceEeeeec----eeceeEEEEEECCCCCEEEEec-CCCCEEEEecCCC--CCCC-ceecccc
Q 010390          294 MDHRIYLYNVLQLDK--GPIQHFSGC----RIESFYVKSEICPNASHILSGS-SDGNAYVWQVNKP--QADP-IKLKSHD  363 (512)
Q Consensus       294 ~dg~i~i~d~~~~~~--~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~--~~~~-~~~~~h~  363 (512)
                      .++.|.++++.....  .........    ........++++|||++|+++. .++.|.+|+++..  .... .......
T Consensus       212 ~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G  291 (345)
T PF10282_consen  212 LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG  291 (345)
T ss_dssp             TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred             CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC
Confidence            578899999873222  122222211    1112466789999999986654 4678999999533  2211 1222223


Q ss_pred             CCeEEEEeCCCCCCeEEEEe-CCCcEEEEeC--CCCccccc
Q 010390          364 GEVTAVNWCPNEAGKIVTSS-DDYTVRLWSL--ENSRCSSM  401 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~--~~~~~~~~  401 (512)
                      ...+.++++|++ ++|+++. .++.|.+|++  ++|.+...
T Consensus       292 ~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  292 KFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             SSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            458999999999 6666555 6789999876  46665443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=2.3e-12  Score=112.03  Aligned_cols=281  Identities=14%  Similarity=0.125  Sum_probs=185.4

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      ....|.++.|. ..++...|.....+-.+..+.+........       .............|..+...  ...|++|-.
T Consensus        54 ~~~ris~l~~~-~d~~tevl~~r~~~~~~~~~~~~E~~~~s~-------~~~~~~~~l~~~~I~gl~~~--dg~Litc~~  123 (412)
T KOG3881|consen   54 ELDRISSLLFG-VDGETEVLNARSADDDLPKFVIEEFEISSS-------LDDAKTVSLGTKSIKGLKLA--DGTLITCVS  123 (412)
T ss_pred             hhhhhhhheee-cCCceeEeeccccCcccccccccCCccccc-------cccccccccccccccchhhc--CCEEEEEec
Confidence            45567777774 133334555554666677776654432110       01122334456677777764  447888899


Q ss_pred             CCcEEEEeCCCCe----eeecccCcCCCEEEEEeeCCCCCeEEEEeCC--CcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          129 DQTIKIWDAEKKK----CTGALMGHTGSIKSLCSHPTNSDILVSGSRD--GSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       129 dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      +|.+.+|....+.    .+..+..+ ..+..+.-++..+.++++|+..  ..+.+||+++.+.+..         ....+
T Consensus       124 sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~---------aKNvp  193 (412)
T KOG3881|consen  124 SGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS---------AKNVP  193 (412)
T ss_pred             CCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeee---------ccCCC
Confidence            9999999987442    23334433 4677777788777888889998  8999999987643221         11111


Q ss_pred             ccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                      ...+.   .      .-.-.++++.|.+.  ...+++ ++.-+.|++||++.++.+..          .+.....+++++
T Consensus       194 nD~L~---L------rVPvW~tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~----------~fd~~E~~is~~  253 (412)
T KOG3881|consen  194 NDRLG---L------RVPVWITDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVA----------QFDFLENPISST  253 (412)
T ss_pred             Ccccc---c------eeeeeeccceecCCCCCceEEE-EecceeEEEecCcccCccee----------EeccccCcceee
Confidence            11100   0      11235678888876  556665 55789999999998776554          344556789999


Q ss_pred             EeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390          281 SQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK  360 (512)
Q Consensus       281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~  360 (512)
                      ...|+++++++|..-|.+..||++.... ....+.+  ..+.+..+..+|.++++++++-|..+||+|+.+.+.....+.
T Consensus       254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-~g~~~kg--~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv  330 (412)
T KOG3881|consen  254 GLTPSGNFIYTGNTKGQLAKFDLRGGKL-LGCGLKG--ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV  330 (412)
T ss_pred             eecCCCcEEEEecccchhheecccCcee-eccccCC--ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence            9999999999999999999999976422 1111222  234577788999999999999999999999998655333322


Q ss_pred             cccCCeEEEEeCCC
Q 010390          361 SHDGEVTAVNWCPN  374 (512)
Q Consensus       361 ~h~~~v~~v~~~~~  374 (512)
                        ...++++.+.++
T Consensus       331 --Ks~lt~il~~~~  342 (412)
T KOG3881|consen  331 --KSRLTFILLRDD  342 (412)
T ss_pred             --hccccEEEecCC
Confidence              345666666554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2.8e-12  Score=123.39  Aligned_cols=217  Identities=11%  Similarity=0.076  Sum_probs=138.9

Q ss_pred             CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          130 QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      ..|.+||.... ....+..+...+.+.+|+|++ +.|+..+.+   ..|.+||+.+++...                   
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~~-------------------  242 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQREL-------------------  242 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEEE-------------------
Confidence            46899998544 444555677789999999998 667666533   469999997654211                   


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS  284 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (512)
                               +....+...+..|+|+++.++.+.+.+|  .|++||+.+++...            ...+.......+|+|
T Consensus       243 ---------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~------------lt~~~~~~~~~~~sp  301 (433)
T PRK04922        243 ---------VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR------------LTNHFGIDTEPTWAP  301 (433)
T ss_pred             ---------eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE------------CccCCCCccceEECC
Confidence                     1111223457899999998876655555  59999998765432            222223346789999


Q ss_pred             CCCEEEEEe-cCCe--EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC---CEEEEecCCCCCCCce
Q 010390          285 NGVFLTASC-MDHR--IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG---NAYVWQVNKPQADPIK  358 (512)
Q Consensus       285 ~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iw~~~~~~~~~~~  358 (512)
                      ||+.|+..+ .+|.  |+++|+....   ...+....  ......+|+|+|++|+..+.++   .|.+||+.+++..  .
T Consensus       302 DG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~  374 (433)
T PRK04922        302 DGKSIYFTSDRGGRPQIYRVAASGGS---AERLTFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--T  374 (433)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCC---eEEeecCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--E
Confidence            999888766 3444  6666654432   22221111  1233579999999998765432   5999999776542  2


Q ss_pred             eccccCCeEEEEeCCCCCCeEEEEeCC---CcEEEEeCCCCc
Q 010390          359 LKSHDGEVTAVNWCPNEAGKIVTSSDD---YTVRLWSLENSR  397 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~~l~s~~~d---g~i~vwd~~~~~  397 (512)
                      +. +........|+||+ ++|+..+.+   +.|.++++..+.
T Consensus       375 Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        375 LT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             CC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCCc
Confidence            32 22345567999999 666655543   467788886543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.51  E-value=1.3e-11  Score=114.48  Aligned_cols=253  Identities=13%  Similarity=0.124  Sum_probs=152.9

Q ss_pred             eEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe-CCCcEE
Q 010390           55 AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS-GDQTIK  133 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~  133 (512)
                      .+.|   +|||+++++++.||.|.++|+.+.+.             +.+++.. ....++++++||++++++. .++.+.
T Consensus        41 ~~~~---s~Dgr~~yv~~rdg~vsviD~~~~~~-------------v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~  103 (369)
T PF02239_consen   41 GLKF---SPDGRYLYVANRDGTVSVIDLATGKV-------------VATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVS  103 (369)
T ss_dssp             EEE----TT-SSEEEEEETTSEEEEEETTSSSE-------------EEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEE
T ss_pred             EEEe---cCCCCEEEEEcCCCeEEEEECCcccE-------------EEEEecC-CCcceEEEcCCCCEEEEEecCCCcee
Confidence            3455   99999999999999999999987743             5555443 4568899999999998665 589999


Q ss_pred             EEeCCCCeeeecccCc-------CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          134 IWDAEKKKCTGALMGH-------TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       134 iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      |+|.++.+.+..+...       ...+.+|..+|....++++.-.-+.|.+-|.........                  
T Consensus       104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~------------------  165 (369)
T PF02239_consen  104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV------------------  165 (369)
T ss_dssp             EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE------------------
T ss_pred             EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce------------------
Confidence            9999999988877532       346778888887733444444457888888765422110                  


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC---CC---------ccc--------
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW---PH---------AES--------  266 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~---~~---------~~~--------  266 (512)
                              .............|.|++++++++...+..|-++|..+.+.......   ++         ...        
T Consensus       166 --------~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~  237 (369)
T PF02239_consen  166 --------TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG  237 (369)
T ss_dssp             --------EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred             --------eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc
Confidence                    11122345667899999999888766677888999887655432211   11         000        


Q ss_pred             ------------------------cccccccccCeeEEEeCCCCCEEEEE----ecCCeEEEEEcccCCCCceEeeeece
Q 010390          267 ------------------------SSAKETRLHGISSLSQDSNGVFLTAS----CMDHRIYLYNVLQLDKGPIQHFSGCR  318 (512)
Q Consensus       267 ------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~  318 (512)
                                              .........+ ..+..+|+++++++.    ...+.|.++|..+.  .....+....
T Consensus       238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~~~~~i~~~~  314 (369)
T PF02239_consen  238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--KVVKTITPGP  314 (369)
T ss_dssp             SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--EEEE-HHHHH
T ss_pred             ccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--ceeEEEeccC
Confidence                                    0001111122 557779999999998    34589999998764  2222222111


Q ss_pred             eceeEEEEEECCCCCEEEEecCC--CCEEEEecCCCCC
Q 010390          319 IESFYVKSEICPNASHILSGSSD--GNAYVWQVNKPQA  354 (512)
Q Consensus       319 ~~~~~~~~~~s~~~~~l~~g~~d--g~i~iw~~~~~~~  354 (512)
                       ...+..+.|+++|+++.....+  +.|.+||..+.+.
T Consensus       315 -~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  315 -GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             -T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             -CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence             1126779999999987655443  3699999988765

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=2.8e-12  Score=122.98  Aligned_cols=200  Identities=15%  Similarity=0.101  Sum_probs=125.6

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeCC---CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDED---GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      ..+...+.+.+|   ||||+.||..+.+   ..|.+||+.++..              ..+....+.+....|+|||+.|
T Consensus       192 ~~~~~~v~~p~w---SPDG~~la~~s~~~~~~~I~~~dl~~g~~--------------~~l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        192 LSSPEPIISPAW---SPDGTKLAYVSFESKKPVVYVHDLATGRR--------------RVVANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             ccCCCCcccceE---cCCCCEEEEEEccCCCcEEEEEECCCCCE--------------EEeecCCCCccceEECCCCCEE
Confidence            456677788888   9999999887543   3599999987642              1122233456789999999988


Q ss_pred             E-EEeCCCcEEEEe--CCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          124 L-TASGDQTIKIWD--AEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       124 ~-s~~~dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      + +.+.+|...||.  +.++. ...+..+........|+|++..++++...+|...+|.+.......             
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-------------  320 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-------------  320 (427)
T ss_pred             EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-------------
Confidence            7 566777766665  44444 444555555567788999984344444445677777654211100             


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCee
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                   ..............|+|+|+.++.++..++  .|.+||+.+++.....            . .....
T Consensus       321 -------------~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt------------~-~~~~~  374 (427)
T PRK02889        321 -------------QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT------------D-TTRDE  374 (427)
T ss_pred             -------------EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc------------C-CCCcc
Confidence                         000011122345789999999987664333  6999999876543211            1 11235


Q ss_pred             EEEeCCCCCEEEEEecCC---eEEEEEc
Q 010390          279 SLSQDSNGVFLTASCMDH---RIYLYNV  303 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg---~i~i~d~  303 (512)
                      ...|+|||+.|+.++.++   .+.+.++
T Consensus       375 ~p~~spdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        375 SPSFAPNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             CceECCCCCEEEEEEecCCCEEEEEEEC
Confidence            679999999988877543   2444444

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=9.3e-12  Score=116.44  Aligned_cols=283  Identities=11%  Similarity=0.111  Sum_probs=186.5

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccc--ccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHR--ENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      ..|++|   +.+..|+|+|+.||.+++-.+.+.........  .......-+++.||++.|.-+.|+.+.+.|-+...+|
T Consensus        17 L~c~~W---Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   17 LHCAEW---NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             EEEEEE---cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            345555   99999999999999999998876544322211  1122234567899999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          131 TIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      .|.||-+-.|.-...+.  ..++.|.+++|..+| ..++..-.||.|.+=.++....-...                   
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKe-------------------  153 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKE-------------------  153 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchh-------------------
Confidence            99999998886554442  245678999999998 88999999999988776643321100                   


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe------
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ------  282 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------  282 (512)
                               -.......+.|++|.+.++. +-.+|.+.+||....-.......-..............|-.+.|      
T Consensus       154 ---------Lkg~~l~hv~ws~D~~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~  223 (1189)
T KOG2041|consen  154 ---------LKGQLLAHVLWSEDLEQALF-KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ  223 (1189)
T ss_pred             ---------cchheccceeecccHHHHHh-hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence                     00113457889999888776 44689999999764311100000000000011111222444444      


Q ss_pred             --CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC---------CEEEEecCC
Q 010390          283 --DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG---------NAYVWQVNK  351 (512)
Q Consensus       283 --~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---------~i~iw~~~~  351 (512)
                        -|+...|+++..+|.+.+..-.+. ..++..-.+    ..++...|+++|..|+.++.+.         .|++|..-.
T Consensus       224 ~v~pdrP~lavcy~nGr~QiMR~eND-~~Pvv~dtg----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G  298 (1189)
T KOG2041|consen  224 PVPPDRPRLAVCYANGRMQIMRSEND-PEPVVVDTG----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG  298 (1189)
T ss_pred             cCCCCCCEEEEEEcCceehhhhhcCC-CCCeEEecc----cEeecceecCCCcEEEEccCcccccCccccceEEEeccch
Confidence              357789999999999988765432 233333333    3466789999999999887642         455654322


Q ss_pred             CCCCCceeccccCCeEEEEeCCCC
Q 010390          352 PQADPIKLKSHDGEVTAVNWCPNE  375 (512)
Q Consensus       352 ~~~~~~~~~~h~~~v~~v~~~~~~  375 (512)
                       + ...++.-....|++++|-..|
T Consensus       299 -~-i~gtlkvpg~~It~lsWEg~g  320 (1189)
T KOG2041|consen  299 -H-IVGTLKVPGSCITGLSWEGTG  320 (1189)
T ss_pred             -h-heEEEecCCceeeeeEEcCCc
Confidence             2 235566667789999886655

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.48  E-value=4.8e-12  Score=106.48  Aligned_cols=147  Identities=19%  Similarity=0.267  Sum_probs=103.4

Q ss_pred             ecCCCcEEEEeeC----------CCcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEEecCCCEEEE--Ee
Q 010390           61 TSKNSHIFAVSDE----------DGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCWIKEDTNILT--AS  127 (512)
Q Consensus        61 ~s~~~~~latg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s--~~  127 (512)
                      |+|+|++|++-..          -|...||.++....            ....+. ...++|.+++|+|+|+.|+.  |.
T Consensus        13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~------------~~~~i~l~~~~~I~~~~WsP~g~~favi~g~   80 (194)
T PF08662_consen   13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI------------PVESIELKKEGPIHDVAWSPNGNEFAVIYGS   80 (194)
T ss_pred             ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC------------ccceeeccCCCceEEEEECcCCCEEEEEEcc
Confidence            3899987776432          13355665533211            122222 23457999999999998764  44


Q ss_pred             CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      .++.|.+||++ ++.+..+.  ...++.+.|+|+| ++|++++.+   |.|.+||+++.+.+...               
T Consensus        81 ~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~---------------  141 (194)
T PF08662_consen   81 MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTF---------------  141 (194)
T ss_pred             CCcccEEEcCc-ccEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecc---------------
Confidence            57899999996 66666664  4678899999998 788887643   67999999855433211               


Q ss_pred             ccccccccceecccccccEEEEEEeecCCEEEEEeec-----CCeEEEEeccC
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-----NSIVKFWDTRN  252 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-----dg~i~iwd~~~  252 (512)
                                    ....+..++|+|+|++++++.+.     |..++||+...
T Consensus       142 --------------~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  142 --------------EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             --------------ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence                          12357899999999999998764     78899999864

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.8e-11  Score=116.98  Aligned_cols=236  Identities=13%  Similarity=0.143  Sum_probs=146.7

Q ss_pred             cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeeecccCcCCC
Q 010390           76 YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEKKKCTGALMGHTGS  152 (512)
Q Consensus        76 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~  152 (512)
                      .|.++|.+...              .+.+..+...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+.
T Consensus       180 ~l~~~d~~g~~--------------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~  244 (430)
T PRK00178        180 TLQRSDYDGAR--------------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGL  244 (430)
T ss_pred             EEEEECCCCCC--------------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCC
Confidence            47777776442              23344567789999999999999876543   369999998886543 2223344


Q ss_pred             EEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390          153 IKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK  230 (512)
Q Consensus       153 v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  230 (512)
                      +....|+|++..++++...+|  .|.+||+.++....                            +..+........|+|
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----------------------------lt~~~~~~~~~~~sp  296 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----------------------------VTNHPAIDTEPFWGK  296 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE----------------------------cccCCCCcCCeEECC
Confidence            557899999844445666665  57778887654211                            111223345678999


Q ss_pred             cCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC-C--eEEEEEccc
Q 010390          231 DEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD-H--RIYLYNVLQ  305 (512)
Q Consensus       231 ~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~  305 (512)
                      +++.++.++..++  .|+++|+.+++.....          .  .........|+|+|+.++..+.+ +  .|.++|+.+
T Consensus       297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt----------~--~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t  364 (430)
T PRK00178        297 DGRTLYFTSDRGGKPQIYKVNVNGGRAERVT----------F--VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR  364 (430)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCEEEee----------c--CCCCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence            9999887664444  5777777665532211          0  11123457899999998877643 3  588888865


Q ss_pred             CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-C--CEEEEecCCCCCCCceeccccCCeEEEEeCCC
Q 010390          306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-G--NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN  374 (512)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~  374 (512)
                      ...   ..+.....   .....|+|+|++++..+.+ +  .|+++++.....  ..+..+.+.+...+|+|-
T Consensus       365 g~~---~~lt~~~~---~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~--~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        365 GSV---RILTDTSL---DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR--LPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CCE---EEccCCCC---CCCceECCCCCEEEEEEecCCceEEEEEECCCCce--EECcCCCCCcCCCccCCC
Confidence            432   22221111   1135899999999766543 3  466667654322  334445566777888873

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.46  E-value=1.8e-11  Score=119.48  Aligned_cols=120  Identities=18%  Similarity=0.322  Sum_probs=103.6

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  124 (512)
                      .+.||++.|+++.+   +-||.++|+.+.|.++++|++++.+..            ....-+|...|..++|+|+  .|+
T Consensus       170 ~l~GHeG~iF~i~~---s~dg~~i~s~SdDRsiRlW~i~s~~~~------------~~~~fgHsaRvw~~~~~~n--~i~  232 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVT---SLDGRYIASVSDDRSIRLWPIDSREVL------------GCTGFGHSARVWACCFLPN--RII  232 (967)
T ss_pred             eecccCCceEEEEE---ccCCcEEEEEecCcceeeeeccccccc------------CcccccccceeEEEEeccc--eeE
Confidence            78899999999999   999999999999999999999987541            2356789999999999988  899


Q ss_pred             EEeCCCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          125 TASGDQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      |++.|-+.++|+.+ +.....+.+|. ..|+.++..+.. ..++|++.|+.+++||+...
T Consensus       233 t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  233 TVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhcc
Confidence            99999999999754 44455777776 478999988866 89999999999999998654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=2.7e-11  Score=116.51  Aligned_cols=222  Identities=14%  Similarity=0.128  Sum_probs=135.6

Q ss_pred             ccccCCCcEEEEEEecCCCEEEEEeC-C--CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc--EEE
Q 010390          103 DWVAHQNAIFDLCWIKEDTNILTASG-D--QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS--FAI  177 (512)
Q Consensus       103 ~~~~h~~~V~~l~~s~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~v  177 (512)
                      .+..+...+.+..|+|||+.|+..+. +  ..|.+||+.+++... +....+......|+|++..++++.+.+|.  |.+
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence            34456778999999999999986654 3  258899998876432 22222334568999999555556677775  666


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccc
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKA  255 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~  255 (512)
                      +|+.+++..                            .+..+........|+|+++.++.++..++  .|.++|+.+++.
T Consensus       291 ~dl~tg~~~----------------------------~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        291 VDIATKALT----------------------------RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             EECCCCCeE----------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            777654321                            11122334567789999999988765454  466667766543


Q ss_pred             eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC-C--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390          256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD-H--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA  332 (512)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  332 (512)
                      ...            ..........+|+|||++|+..+.+ +  .|.++|+.+...   ..+.....   .....|+|+|
T Consensus       343 ~~L------------t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~---~~lt~~~~---d~~ps~spdG  404 (448)
T PRK04792        343 SRL------------TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM---QVLTSTRL---DESPSVAPNG  404 (448)
T ss_pred             EEE------------ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe---EEccCCCC---CCCceECCCC
Confidence            221            1111123456899999988876543 4  455667654322   22221111   1135799999


Q ss_pred             CEEEEecC-CCC--EEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390          333 SHILSGSS-DGN--AYVWQVNKPQADPIKLKSHDGEVTAVNWCP  373 (512)
Q Consensus       333 ~~l~~g~~-dg~--i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~  373 (512)
                      +.|+..+. ++.  +++++.+...  ...+..+.+.+...+|+|
T Consensus       405 ~~I~~~~~~~g~~~l~~~~~~G~~--~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        405 TMVIYSTTYQGKQVLAAVSIDGRF--KARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCCc--eEECcCCCCCcCCCccCC
Confidence            98876554 333  6667764332  234555566778888887

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=6e-10  Score=96.84  Aligned_cols=280  Identities=13%  Similarity=0.136  Sum_probs=176.3

Q ss_pred             eEEEEEecCCCcEEEEeeC---CCcEEEEECCC--CCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-
Q 010390           55 AVSFCKTSKNSHIFAVSDE---DGYVSLFDSRR--KLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-  128 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-  128 (512)
                      ..+|+.++|++++|.++..   +|.|.-|.++.  +...+           +.....-..+-+.+++++++++|+++.. 
T Consensus        41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-----------ln~~~~~g~~p~yvsvd~~g~~vf~AnY~  109 (346)
T COG2706          41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-----------LNRQTLPGSPPCYVSVDEDGRFVFVANYH  109 (346)
T ss_pred             CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-----------eeccccCCCCCeEEEECCCCCEEEEEEcc
Confidence            3445555999999998844   57788888775  32211           1111122233388999999999998876 


Q ss_pred             CCcEEEEeCCC-Ceeeec--ccCcCCC----------EEEEEeeCCCCCeEEEEeC-CCcEEEEeCCCCCCCCCccccce
Q 010390          129 DQTIKIWDAEK-KKCTGA--LMGHTGS----------IKSLCSHPTNSDILVSGSR-DGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       129 dg~i~iwd~~~-~~~~~~--~~~h~~~----------v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      .|.|.++-+++ |.+...  +..|.+.          +....+.|++ ++|++.+. -..|.+|++..+........   
T Consensus       110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~---  185 (346)
T COG2706         110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPA---  185 (346)
T ss_pred             CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCcccccccc---
Confidence            58899998865 432211  1224444          8889999998 77777754 23799999986654332111   


Q ss_pred             eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL  274 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  274 (512)
                                           ........+-|.|+|+++...+.+..+++|.+|..+................ ......
T Consensus       186 ---------------------~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP-~dF~g~  243 (346)
T COG2706         186 ---------------------EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP-EDFTGT  243 (346)
T ss_pred             ---------------------ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc-cccCCC
Confidence                                 1133456788999999999999998999999999987522221111111100 122333


Q ss_pred             cCeeEEEeCCCCCEEEEEec-CCeEEEEEcccCCCCceEeeeecee-ceeEEEEEECCCCCEEEEecCC-CCEEEEecCC
Q 010390          275 HGISSLSQDSNGVFLTASCM-DHRIYLYNVLQLDKGPIQHFSGCRI-ESFYVKSEICPNASHILSGSSD-GNAYVWQVNK  351 (512)
Q Consensus       275 ~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~~d-g~i~iw~~~~  351 (512)
                      .+..++.+++||++|+++.. ...|.+|.+...... +........ ......+.+++.+++|+++..+ ..|.+|..+.
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            55778999999999998864 357888888654332 222222222 2235568899999999887765 5699998765


Q ss_pred             CCCCCcee--ccccCCeEEEEeC
Q 010390          352 PQADPIKL--KSHDGEVTAVNWC  372 (512)
Q Consensus       352 ~~~~~~~~--~~h~~~v~~v~~~  372 (512)
                      ..-.+..+  ........||.|.
T Consensus       323 ~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         323 ETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCceEEecccccCCCCcEEEEEc
Confidence            43322222  1233345566553

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.45  E-value=9.7e-12  Score=106.39  Aligned_cols=259  Identities=13%  Similarity=0.207  Sum_probs=189.0

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeC-CCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDA-EKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFA  176 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  176 (512)
                      ..+..++||.+.|++...-|...-+++.+.|.+++||-- +.++.-..+. .-..+++++.+.++. ..|+.|-.+|++.
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEE
Confidence            447778999999999999998888999999999999953 3344332322 234678999999877 8899999999998


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ  256 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~  256 (512)
                      -+.+...-..                       ....+....|...+..+.|+.....++++| .|..+.---.+.+...
T Consensus        94 efs~sedfnk-----------------------m~~~r~~~~h~~~v~~~if~~~~e~V~s~~-~dk~~~~hc~e~~~~l  149 (404)
T KOG1409|consen   94 EFALSEDFNK-----------------------MTFLKDYLAHQARVSAIVFSLTHEWVLSTG-KDKQFAWHCTESGNRL  149 (404)
T ss_pred             EEEhhhhhhh-----------------------cchhhhhhhhhcceeeEEecCCceeEEEec-cccceEEEeeccCCcc
Confidence            8876532111                       112234557888999999998888888876 5665543333333322


Q ss_pred             ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390          257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL  336 (512)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  336 (512)
                      -...         +   ....+++.++-.  +...|...|.|.+..+......++..+.++.  ..+.+++|.+....|.
T Consensus       150 g~Y~---------~---~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~--~~~~~l~Wd~~~~~Lf  213 (404)
T KOG1409|consen  150 GGYN---------F---ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHT--GEVTCLKWDPGQRLLF  213 (404)
T ss_pred             cceE---------e---eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcc--cceEEEEEcCCCcEEE
Confidence            1110         0   001111222211  5566777788888777666666777777664  5588899999999999


Q ss_pred             EecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       337 ~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      +|..|..+.+||+...+.....+.+|.+.|..+...+.- +.|++++.||.|.+|+++..+..
T Consensus       214 Sg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  214 SGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             eccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccceeec
Confidence            999999999999988777677889999999999888877 89999999999999999876543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.44  E-value=1.4e-11  Score=103.16  Aligned_cols=212  Identities=13%  Similarity=0.162  Sum_probs=150.2

Q ss_pred             cCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC---CCcEEEEEEecCCCEEEE
Q 010390           50 ETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH---QNAIFDLCWIKEDTNILT  125 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~s~~~~~l~s  125 (512)
                      +..++.+.|+.--.+|. .++-+..+|.|.+|........          ..+..+..-   .....++.|++.+..+++
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss----------~~L~~ls~~ki~~~~~lslD~~~~~~~i~v  138 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS----------VHLRGLSSKKISVVEALSLDISTSGTKIFV  138 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceee----------eeecccchhhhhheeeeEEEeeccCceEEE
Confidence            44567777766556676 6777788999999976543210          111111111   123568889999999999


Q ss_pred             EeCCCcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          126 ASGDQTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       126 ~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      +..+|.+.+-+......  ++.++.|.-..+...|+...++++.+|+.|+.+..||++....-.                
T Consensus       139 s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i----------------  202 (339)
T KOG0280|consen  139 SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI----------------  202 (339)
T ss_pred             EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee----------------
Confidence            99999999766555543  448899999999999999888999999999999999998432110                


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                               ....+.|...|.++.-+|.....+++|+.|-.|++||+++......           .....++|..+.++
T Consensus       203 ---------~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-----------~~~v~GGVWRi~~~  262 (339)
T KOG0280|consen  203 ---------WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-----------KAKVGGGVWRIKHH  262 (339)
T ss_pred             ---------eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-----------cCccccceEEEEec
Confidence                     1123467889999999987777777799999999999997655432           23334789999999


Q ss_pred             CCCC-EEEEEecCCeEEEEEcccCC
Q 010390          284 SNGV-FLTASCMDHRIYLYNVLQLD  307 (512)
Q Consensus       284 ~~~~-~l~~~~~dg~i~i~d~~~~~  307 (512)
                      |.-. .|+.++.-+-.+|.+.....
T Consensus       263 p~~~~~lL~~CMh~G~ki~~~~~~~  287 (339)
T KOG0280|consen  263 PEIFHRLLAACMHNGAKILDSSDKV  287 (339)
T ss_pred             chhhhHHHHHHHhcCceEEEecccc
Confidence            8543 34445555556777765543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.42  E-value=3e-09  Score=92.54  Aligned_cols=292  Identities=10%  Similarity=0.107  Sum_probs=181.7

Q ss_pred             CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCC--Ceee--ecc
Q 010390           74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEK--KKCT--GAL  146 (512)
Q Consensus        74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~--~~~~--~~~  146 (512)
                      +.-|.+|++++.....          ....+-.+.+..+-|+|+|++++|.++..+   |.|.-|.++.  |+..  ...
T Consensus        15 s~gI~v~~ld~~~g~l----------~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~   84 (346)
T COG2706          15 SQGIYVFNLDTKTGEL----------SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ   84 (346)
T ss_pred             CCceEEEEEeCccccc----------chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence            4569999988543211          122334567889999999999999987664   6677776654  5432  222


Q ss_pred             cCcCCCEEEEEeeCCCCCeEEEEeC-CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          147 MGHTGSIKSLCSHPTNSDILVSGSR-DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       147 ~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      .....+-+.+++++++ ++++++.. -|.|.++-++....+........          +.   .... ..+.....+-.
T Consensus        85 ~~~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~----------h~---g~~p-~~rQ~~~h~H~  149 (346)
T COG2706          85 TLPGSPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVK----------HT---GSGP-HERQESPHVHS  149 (346)
T ss_pred             ccCCCCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeee----------cC---CCCC-CccccCCccce
Confidence            2122334789999988 66666654 57999999875432221100000          00   0000 00111223778


Q ss_pred             EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcc
Q 010390          226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVL  304 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~  304 (512)
                      ..+.|++++++++.----.|.+|++..+.......        .......+...|.|+|++++.++.+ -+++|.+|...
T Consensus       150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~--------~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~  221 (346)
T COG2706         150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP--------AEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN  221 (346)
T ss_pred             eeeCCCCCEEEEeecCCceEEEEEcccCccccccc--------cccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence            88999999999876555689999999665443211        1224456788999999999887665 68999999987


Q ss_pred             cCCCCceEeeee-------ceeceeEEEEEECCCCCEEEEecC-CCCEEEEecCCCCCCCcee---ccccCCeEEEEeCC
Q 010390          305 QLDKGPIQHFSG-------CRIESFYVKSEICPNASHILSGSS-DGNAYVWQVNKPQADPIKL---KSHDGEVTAVNWCP  373 (512)
Q Consensus       305 ~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~---~~h~~~v~~v~~~~  373 (512)
                      .. ...+..++.       .......-.+.+++||++|.+... ...|.+|.+......+...   .-+....+...+++
T Consensus       222 ~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~  300 (346)
T COG2706         222 PA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP  300 (346)
T ss_pred             CC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC
Confidence            63 222222221       112234556889999999987754 3468888886543322222   22334578899999


Q ss_pred             CCCCeEEEEeCC-CcEEEEeCC--CCcccc
Q 010390          374 NEAGKIVTSSDD-YTVRLWSLE--NSRCSS  400 (512)
Q Consensus       374 ~~~~~l~s~~~d-g~i~vwd~~--~~~~~~  400 (512)
                      .+ ++|+++..| ..|.++..+  +|++..
T Consensus       301 ~g-~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         301 SG-RFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             CC-CEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            99 777777754 578888664  444433

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.42  E-value=1.5e-12  Score=133.21  Aligned_cols=226  Identities=15%  Similarity=0.201  Sum_probs=162.8

Q ss_pred             ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccC-cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMG-HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      +.+-..|.++.=+|...+.+||+.||.|++|....++.+..++. ....|+.+.|+.+| +.+..+..||.+.+|.....
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccCCc
Confidence            44567788888889899999999999999999998888776642 23789999999988 88889999999999998721


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe--ecCCeEEEEeccCccceecccC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS--AVNSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g--~~dg~i~iwd~~~~~~~~~~~~  261 (512)
                                                  .....+.|+.....+.|..  ..++++|  .+++.+.+||..-......   
T Consensus      2284 ----------------------------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~--- 2330 (2439)
T KOG1064|consen 2284 ----------------------------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL--- 2330 (2439)
T ss_pred             ----------------------------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce---
Confidence                                        1124456777777887776  4445444  4678999999765433222   


Q ss_pred             CCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390          262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD  341 (512)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  341 (512)
                             ....|.++++++++-|..+.|++|+.+|.|++||++..+  ....+..           +. ...++++|+..
T Consensus      2331 -------v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq--l~h~~~~-----------~~-~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2331 -------VHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ--LRHTFQA-----------LD-TREYFVTGSSE 2389 (2439)
T ss_pred             -------eeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH--HHHHhhh-----------hh-hhheeeccCcc
Confidence                   347888999999999999999999999999999997632  2222221           33 45789999999


Q ss_pred             CCEEEEecCCCCCCCceeccc--cCC--e--EEEEeCCCCCCeEEEEeCCCc
Q 010390          342 GNAYVWQVNKPQADPIKLKSH--DGE--V--TAVNWCPNEAGKIVTSSDDYT  387 (512)
Q Consensus       342 g~i~iw~~~~~~~~~~~~~~h--~~~--v--~~v~~~~~~~~~l~s~~~dg~  387 (512)
                      |.|+||++............|  .+-  +  ..+...+.  +.|.+|+.||+
T Consensus      2390 g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~--nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQC--NRIFSCGADGT 2439 (2439)
T ss_pred             cceEEEEccccchhhcCchhhcccchhhhcCceeeeccC--ceEEEecCCCC
Confidence            999999998764422211122  110  1  22222222  57888888874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.41  E-value=1.2e-11  Score=104.45  Aligned_cols=268  Identities=19%  Similarity=0.262  Sum_probs=168.1

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC------------CcEEEEEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ------------NAIFDLCW  116 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V~~l~~  116 (512)
                      ..+.|++|.|   ...|.|||+|...|.|.+|.-+....        -+.+-...+++|.            +.|..+.|
T Consensus        25 ead~ItaVef---d~tg~YlatGDkgGRVvlfer~~s~~--------ceykf~teFQshe~EFDYLkSleieEKin~I~w   93 (460)
T COG5170          25 EADKITAVEF---DETGLYLATGDKGGRVVLFEREKSYG--------CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEW   93 (460)
T ss_pred             ccceeeEEEe---ccccceEeecCCCceEEEeecccccc--------cchhhhhhhcccccchhhhhhccHHHHhhheee
Confidence            4566889988   88899999999999999998654331        1112244455554            46889999


Q ss_pred             ecCC--CEEEEEeCCCcEEEEeCCCCe-------------------ee-----------------------ecc-cCcCC
Q 010390          117 IKED--TNILTASGDQTIKIWDAEKKK-------------------CT-----------------------GAL-MGHTG  151 (512)
Q Consensus       117 s~~~--~~l~s~~~dg~i~iwd~~~~~-------------------~~-----------------------~~~-~~h~~  151 (512)
                      ..++  ..++..+.|.+|++|.+....                   ++                       +.. ..|.-
T Consensus        94 ~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y  173 (460)
T COG5170          94 FDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY  173 (460)
T ss_pred             ecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence            8744  345666789999999875431                   00                       011 34777


Q ss_pred             CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec
Q 010390          152 SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD  231 (512)
Q Consensus       152 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  231 (512)
                      .|++++|..+. ..++++ .|=.|.+|++.-.......      .             .-.......-..-|++..|+|.
T Consensus       174 hiNSiS~NsD~-et~lSa-DdLrINLWnl~i~D~sFnI------V-------------DiKP~nmeeLteVItSaeFhp~  232 (460)
T COG5170         174 HINSISFNSDK-ETLLSA-DDLRINLWNLEIIDGSFNI------V-------------DIKPHNMEELTEVITSAEFHPE  232 (460)
T ss_pred             EeeeeeecCch-heeeec-cceeeeeccccccCCceEE------E-------------eccCccHHHHHHHHhhcccCHh
Confidence            78899998876 555554 5678999998633211100      0             0000011112235788899997


Q ss_pred             CCEEEEEeecCCeEEEEeccCcccee-----cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC
Q 010390          232 EVSIATASAVNSIVKFWDTRNLKAQI-----TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL  306 (512)
Q Consensus       232 ~~~l~~~g~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  306 (512)
                      ...++.-++..|.|++-|++......     ......+.....+......|..+.|+++|+++++-. --++++||++. 
T Consensus       233 ~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm-  310 (460)
T COG5170         233 MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNM-  310 (460)
T ss_pred             HcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccc-
Confidence            76665555579999999998432211     000000111112334456688999999999988764 45899999865 


Q ss_pred             CCCceEeeeecee----------ce---eEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          307 DKGPIQHFSGCRI----------ES---FYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       307 ~~~~~~~~~~~~~----------~~---~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      ...++.+..-|..          ..   .-..+.||.|.+.+++|+..+..-+|-..
T Consensus       311 ~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         311 AKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             ccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            3455555533210          00   11246788999999999998888888643

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.41  E-value=3.2e-11  Score=117.81  Aligned_cols=284  Identities=15%  Similarity=0.107  Sum_probs=182.3

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC--CcEEEEEEecCCCEEEEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ--NAIFDLCWIKEDTNILTA  126 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~s~~~~~l~s~  126 (512)
                      |-+++.++++.  +   +||.+|. -..|.+||+..+.....       .....-...|.  +.+..     .+.+++++
T Consensus         6 ~~~~l~~~~~~--~---~~llag~-gp~i~~yd~~s~~li~~-------~~~~~~~~~H~~e~~~~l-----~~~~~v~~   67 (967)
T KOG0974|consen    6 SLGPLNLPQLV--S---DYLLAGS-GPEILVYDLSSGCLIRH-------LIQSKILEVHRGEGKVKL-----LSGKIVTC   67 (967)
T ss_pred             ccccccchhhc--c---ceeeecC-CCceEEeeCCchhHhhh-------hhhhccccccccccccee-----ccceEEEE
Confidence            55666777764  2   6777765 34799999887643111       11122223341  11111     24456666


Q ss_pred             eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          127 SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      ..-+.+..=+... +....+.   +.|....+.-++ ..++.+..+..+.+||.................          
T Consensus        68 ~~~~~v~~~~~~~-~~~~~~s---~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~----------  132 (967)
T KOG0974|consen   68 AKSDEVYVKEASN-QIIERFS---DWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT----------  132 (967)
T ss_pred             Eeecceeecchhh-hhhhhcc---ccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEE----------
Confidence            5555454433221 2222222   233334444444 678888888899999998766544332211100          


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG  286 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  286 (512)
                                   -....-+..+++.-+ +.+|+.-+.|.+|+....+...           ...+|.+.|.++.++.||
T Consensus       133 -------------l~~~~~~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-----------~l~GHeG~iF~i~~s~dg  187 (967)
T KOG0974|consen  133 -------------LYSSLIIGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-----------RLKGHEGSIFSIVTSLDG  187 (967)
T ss_pred             -------------EEeEEEEeccCcEEE-EEeccccccEEEEeccccCCcc-----------eecccCCceEEEEEccCC
Confidence                         001111222333334 4457788999999988332221           478999999999999999


Q ss_pred             CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc-CC
Q 010390          287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD-GE  365 (512)
Q Consensus       287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~-~~  365 (512)
                      .++++.+.|.++++|++.+.+...   ..+..+...+..++|.|+  .+++++.|.+.++|+.+..+.  ..+.+|. ..
T Consensus       188 ~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l--~~y~~h~g~~  260 (967)
T KOG0974|consen  188 RYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQL--EVYDEHSGKG  260 (967)
T ss_pred             cEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc--eeEEeccceEEEEEeccccee--hhhhhhhhcc
Confidence            999999999999999997754433   223334566888999998  999999999999997765544  3667774 57


Q ss_pred             eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          366 VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       366 v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      |..++..++. ..++|++.|+.+++|++.....
T Consensus       261 iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r~~  292 (967)
T KOG0974|consen  261 IWKIAVPIGV-IIKVTGGNDSTLKLWDLNGRGL  292 (967)
T ss_pred             eeEEEEcCCc-eEEEeeccCcchhhhhhhcccc
Confidence            9999999888 8999999999999999876543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.39  E-value=1.2e-10  Score=112.50  Aligned_cols=216  Identities=13%  Similarity=0.090  Sum_probs=135.5

Q ss_pred             CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      ...|.++|..... ...+..+...+...+|+|++ +.|+.+..+   ..|++||+.++....                  
T Consensus       169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~------------------  228 (417)
T TIGR02800       169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK------------------  228 (417)
T ss_pred             cceEEEEcCCCCC-CEEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE------------------
Confidence            3468888875443 44455566678999999998 666665543   479999987653211                  


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                                ...+...+.++.|+|+++.++++...++  .|++||+.++....            ...+........|+
T Consensus       229 ----------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~------------l~~~~~~~~~~~~s  286 (417)
T TIGR02800       229 ----------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR------------LTNGPGIDTEPSWS  286 (417)
T ss_pred             ----------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE------------CCCCCCCCCCEEEC
Confidence                      1122334567899999998887654444  58888888764332            11222334567899


Q ss_pred             CCCCEEEEEec-CC--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC---CEEEEecCCCCCCCc
Q 010390          284 SNGVFLTASCM-DH--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG---NAYVWQVNKPQADPI  357 (512)
Q Consensus       284 ~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iw~~~~~~~~~~  357 (512)
                      |+|+.|+..+. ++  .|+++|+....   ...+...  ........|+|+|++|+.++.++   .|.+||+.++..  .
T Consensus       287 ~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~  359 (417)
T TIGR02800       287 PDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--R  359 (417)
T ss_pred             CCCCEEEEEECCCCCceEEEEECCCCC---EEEeecC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--E
Confidence            99998876654 33  57777765432   2222211  12344578999999998887765   788888877543  2


Q ss_pred             eeccccCCeEEEEeCCCCCCeEEEEeCCC---cEEEEeCCC
Q 010390          358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDY---TVRLWSLEN  395 (512)
Q Consensus       358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg---~i~vwd~~~  395 (512)
                      .+... .......|+|++ +.|+..+.++   .+.+.+...
T Consensus       360 ~l~~~-~~~~~p~~spdg-~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       360 VLTDT-GLDESPSFAPNG-RMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             EccCC-CCCCCceECCCC-CEEEEEEeCCCcEEEEEEECCC
Confidence            22222 234556899999 6666665543   355555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.38  E-value=2.5e-09  Score=96.91  Aligned_cols=273  Identities=10%  Similarity=-0.003  Sum_probs=155.9

Q ss_pred             CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----------CCcEEEEeCCCCeeee
Q 010390           75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----------DQTIKIWDAEKKKCTG  144 (512)
Q Consensus        75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~  144 (512)
                      +.|.+.|..+.+.             +.++..-..+- .+ ++||++.|+.+..          +..|.+||..+.+.+.
T Consensus        27 ~~v~ViD~~~~~v-------------~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~   91 (352)
T TIGR02658        27 TQVYTIDGEAGRV-------------LGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA   91 (352)
T ss_pred             ceEEEEECCCCEE-------------EEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence            8999999987643             33333222222 24 8999999886655          7889999999999988


Q ss_pred             cccCcC-------CCEEEEEeeCCCCCeEEEEe-C-CCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390          145 ALMGHT-------GSIKSLCSHPTNSDILVSGS-R-DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR  215 (512)
Q Consensus       145 ~~~~h~-------~~v~~l~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (512)
                      .+.-..       .....++++|++ ++|+... . +..|.+.|+.+++.........+..                  .
T Consensus        92 ~i~~p~~p~~~~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~------------------v  152 (352)
T TIGR02658        92 DIELPEGPRFLVGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH------------------I  152 (352)
T ss_pred             EEccCCCchhhccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE------------------E
Confidence            776321       233478899998 6665544 4 7899999999876544221110000                  0


Q ss_pred             cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEec
Q 010390          216 RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCM  294 (512)
Q Consensus       216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  294 (512)
                      +.  ...-..+..+.|+..+..+-..+|....=   +.. ..   ...     .......+    .+.+ +|.++++...
T Consensus       153 y~--t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~---~~~-vf---~~~-----~~~v~~rP----~~~~~dg~~~~vs~e  214 (352)
T TIGR02658       153 FP--TANDTFFMHCRDGSLAKVGYGTKGNPKIK---PTE-VF---HPE-----DEYLINHP----AYSNKSGRLVWPTYT  214 (352)
T ss_pred             EE--ecCCccEEEeecCceEEEEecCCCceEEe---eee-ee---cCC-----ccccccCC----ceEcCCCcEEEEecC
Confidence            00  00111112223333333222223321100   000 00   000     00000111    3344 8888887766


Q ss_pred             CCeEEEEEcccCCCCceEeee---ece-----eceeEEEEEECCCCCEEEEec----------CCCCEEEEecCCCCCCC
Q 010390          295 DHRIYLYNVLQLDKGPIQHFS---GCR-----IESFYVKSEICPNASHILSGS----------SDGNAYVWQVNKPQADP  356 (512)
Q Consensus       295 dg~i~i~d~~~~~~~~~~~~~---~~~-----~~~~~~~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~  356 (512)
                       |.|.+.|+............   ...     ....+.-++++++++.+++..          ..+.|.++|..+.+...
T Consensus       215 -G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~  293 (352)
T TIGR02658       215 -GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR  293 (352)
T ss_pred             -CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence             99999997543222111111   100     011122389999999887742          12469999998877643


Q ss_pred             ceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCCCcccccc
Q 010390          357 IKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~  402 (512)
                      ....+  ..+..++++||+..+|++.. .++.|.+.|..+++.+...
T Consensus       294 ~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       294 KIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            33333  47999999999931666554 7889999999999887764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=3.4e-10  Score=108.05  Aligned_cols=245  Identities=10%  Similarity=0.067  Sum_probs=141.0

Q ss_pred             CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE---EEeCC--CcEEEEeCCCCeeeecccCc
Q 010390           75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL---TASGD--QTIKIWDAEKKKCTGALMGH  149 (512)
Q Consensus        75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~---s~~~d--g~i~iwd~~~~~~~~~~~~h  149 (512)
                      ..|.+.|.+...              .+.+......+.+-.|+|||+.++   +...+  ..|.+.++.+++.... ...
T Consensus       165 ~~l~~~d~dG~~--------------~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~  229 (428)
T PRK01029        165 GELWSVDYDGQN--------------LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LAL  229 (428)
T ss_pred             ceEEEEcCCCCC--------------ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecC
Confidence            357777776543              223344556677889999997532   33334  3577788887754332 223


Q ss_pred             CCCEEEEEeeCCCCCeEEEEeCCC----cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          150 TGSIKSLCSHPTNSDILVSGSRDG----SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       150 ~~~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      .+......|+|+|..++++...+|    .+..|++..+....                        ..............
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~------------------------~~~lt~~~~~~~~~  285 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGK------------------------PRRLLNEAFGTQGN  285 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCc------------------------ceEeecCCCCCcCC
Confidence            444556899999944444443333    33446655321000                        00001111123456


Q ss_pred             EEEeecCCEEEEEeecCCeEEEEe--ccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---CeEEE
Q 010390          226 VLYLKDEVSIATASAVNSIVKFWD--TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---HRIYL  300 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i  300 (512)
                      ..|+|||+.++.++..+|...+|.  +........          ........+....|+|||+.|+..+.+   ..|.+
T Consensus       286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~----------~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v  355 (428)
T PRK01029        286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR----------LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICV  355 (428)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEECcccccceE----------EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEE
Confidence            799999999888765567555554  432111110          122223456788999999988876543   47999


Q ss_pred             EEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC---CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCC
Q 010390          301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS---DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE  375 (512)
Q Consensus       301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~  375 (512)
                      ||+.+.+..   .+....  .......|+|||++|+....   ...|+++++..++.  ..+....+.+...+|+|..
T Consensus       356 ~dl~~g~~~---~Lt~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        356 YDLATGRDY---QLTTSP--ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT--RKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EECCCCCeE---EccCCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCcccCceecCCC
Confidence            998664332   222111  12345789999998865332   34688888877654  2333345567788888754

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=5.7e-10  Score=101.72  Aligned_cols=286  Identities=10%  Similarity=0.123  Sum_probs=174.1

Q ss_pred             eEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC------
Q 010390           55 AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG------  128 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------  128 (512)
                      .=.+..|||-|.||++--..| |.+|--.+-             ..++.+ .| -.|.-+.|||+.+||+|-+.      
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f-------------~r~~RF-~H-p~Vq~idfSP~EkYLVT~s~~p~~~~  275 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESF-------------DRIQRF-YH-PGVQFIDFSPNEKYLVTYSPEPIIVE  275 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccH-------------HHHHhc-cC-CCceeeecCCccceEEEecCCccccC
Confidence            344566699999999988776 889953321             223333 34 46888999999999998654      


Q ss_pred             -----CCcEEEEeCCCCeeeecccCc--CCCEE-EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          129 -----DQTIKIWDAEKKKCTGALMGH--TGSIK-SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       129 -----dg~i~iwd~~~~~~~~~~~~h--~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                           ...+.|||+.+|...+.+...  ...++ -..|+.++ .++|--.. ..|.||+.....+...            
T Consensus       276 ~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~------------  341 (698)
T KOG2314|consen  276 EDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDK------------  341 (698)
T ss_pred             cccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeecc------------
Confidence                 256999999999988887652  22333 35688887 78877766 4799998764322211            


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecC----CeEEEEeccCccceecccCCCccccccccccccC
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN----SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                     ....-..|....|+|.+..|+.=.-..    ..+.+-.+.+.+.+...           ..+.-.
T Consensus       342 ---------------Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~-----------nlfnVs  395 (698)
T KOG2314|consen  342 ---------------KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK-----------NLFNVS  395 (698)
T ss_pred             ---------------cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec-----------cceeee
Confidence                           011123678888999877766422111    13444444444433321           111122


Q ss_pred             eeEEEeCCCCCEEEEEe----------cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC---CCC
Q 010390          277 ISSLSQDSNGVFLTASC----------MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS---DGN  343 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~  343 (512)
                      =..|.|-.+|.+|+.--          .-..+.|+.++..+ .++...   .....+...+|.|.|+.+++-+.   ..+
T Consensus       396 DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-Ipve~v---elke~vi~FaWEP~gdkF~vi~g~~~k~t  471 (698)
T KOG2314|consen  396 DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-IPVEVV---ELKESVIAFAWEPHGDKFAVISGNTVKNT  471 (698)
T ss_pred             ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-CCceee---ecchheeeeeeccCCCeEEEEEccccccc
Confidence            23456677787776532          11234455554321 222222   22345777999999988765433   357


Q ss_pred             EEEEecCC-CCCCCceeccccCCeEEEEeCCCCCCeEEEEe---CCCcEEEEeCCCCccccc
Q 010390          344 AYVWQVNK-PQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       344 i~iw~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~  401 (512)
                      +.+|.+++ .........-.....+.+.|+|.| ++++.+.   ..|.+.++|+....+..+
T Consensus       472 vsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~~k~~  532 (698)
T KOG2314|consen  472 VSFYAVETNIKKPSLVKELDKKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYADLKDT  532 (698)
T ss_pred             eeEEEeecCCCchhhhhhhcccccceEEEcCCC-cEEEEEEecccccceEEEecchhhhhhc
Confidence            99998873 222111111123467889999999 7776653   578999999987555554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.36  E-value=1.5e-10  Score=106.51  Aligned_cols=192  Identities=16%  Similarity=0.167  Sum_probs=145.8

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe------c--------------CCC
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI------K--------------EDT  121 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s------~--------------~~~  121 (512)
                      +|-+.|+|....||.++|||...++...       +..+..   .-.+..++..|.      |              +..
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~-------e~~p~~---~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~   71 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQ-------EFAPIA---SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTS   71 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeee-------eeccch---hccCcceeEEEEEEeccchHHHHhHHHHhhccCCce
Confidence            5667899999999999999988764311       111121   223344444443      1              334


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      .|+-|...|.|.+|++..++....+.  .|.+.|+++.++.+- ..|.+++.|+.+..|+........            
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~------------  138 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIR------------  138 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeee------------
Confidence            57788889999999999999887775  688999999998766 899999999999999988654332            


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                     .+......+.+++.+||+..++++   .+.|++||+++.+.+.           .+.+|.++|.+
T Consensus       139 ---------------~~~~~~~~~~sl~is~D~~~l~~a---s~~ik~~~~~~kevv~-----------~ftgh~s~v~t  189 (541)
T KOG4547|consen  139 ---------------IWKEQKPLVSSLCISPDGKILLTA---SRQIKVLDIETKEVVI-----------TFTGHGSPVRT  189 (541)
T ss_pred             ---------------eeccCCCccceEEEcCCCCEEEec---cceEEEEEccCceEEE-----------EecCCCcceEE
Confidence                           444556689999999999998874   5899999999999887           58899999999


Q ss_pred             EEeCCC-----CCEEEEE-ecCCeEEEEEccc
Q 010390          280 LSQDSN-----GVFLTAS-CMDHRIYLYNVLQ  305 (512)
Q Consensus       280 ~~~~~~-----~~~l~~~-~~dg~i~i~d~~~  305 (512)
                      +.|-.+     |.+++++ ..+.-|.+|-+..
T Consensus       190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  190 LSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999776     6666554 4566677887654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.35  E-value=5.5e-10  Score=100.86  Aligned_cols=305  Identities=10%  Similarity=0.085  Sum_probs=186.2

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC-
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD-  129 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-  129 (512)
                      -++..+++   ||.|.+|++.... .|.+|.-....             .+.++.  ...|..+.|+|.+.+|++=+.. 
T Consensus        33 ~p~~~~~~---SP~G~~l~~~~~~-~V~~~~g~~~~-------------~l~~~~--~~~V~~~~fSP~~kYL~tw~~~p   93 (561)
T COG5354          33 WPVAYVSE---SPLGTYLFSEHAA-GVECWGGPSKA-------------KLVRFR--HPDVKYLDFSPNEKYLVTWSREP   93 (561)
T ss_pred             cchhheee---cCcchheehhhcc-ceEEccccchh-------------heeeee--cCCceecccCcccceeeeeccCC
Confidence            34555555   9999999998765 48899865432             133332  2579999999999999986543 


Q ss_pred             --------------CcEEEEeCCCCeeeecccCcCCC--EE-EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc-
Q 010390          130 --------------QTIKIWDAEKKKCTGALMGHTGS--IK-SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA-  191 (512)
Q Consensus       130 --------------g~i~iwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-  191 (512)
                                    ..+.+||..++..+..+.....+  .+ -+.|+-++ .++|=. ....+.++++ +......... 
T Consensus        94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~p~~~  170 (561)
T COG5354          94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEHPFKN  170 (561)
T ss_pred             ccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccCchhh
Confidence                          34999999999999888776655  44 56787766 554443 2347899997 3322211000 


Q ss_pred             --cceeeeccccccc-ccc-----cc---------------cccceecccccccEEEEEEeecCCEEEEEee--------
Q 010390          192 --ESFVFSSAVVKGA-HLL-----SQ---------------SKRVSRRKAASMSITSVLYLKDEVSIATASA--------  240 (512)
Q Consensus       192 --~~~~~~~~~~~~~-~~~-----~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~--------  240 (512)
                        ...+....+.+.+ +..     +.               ...+....-....-..+.|++.|.++++-.-        
T Consensus       171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs  250 (561)
T COG5354         171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS  250 (561)
T ss_pred             ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccc
Confidence              0111111111110 000     00               0000000011112235667787877654321        


Q ss_pred             --cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE--ecCCeEEEEEcccCCCCceEeeee
Q 010390          241 --VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS--CMDHRIYLYNVLQLDKGPIQHFSG  316 (512)
Q Consensus       241 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~  316 (512)
                        ....++++++.......            .....++|...+|.|.++.+++.  -.+-.+.++|++..   ....+..
T Consensus       251 yfgesnLyl~~~~e~~i~V------------~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe  315 (561)
T COG5354         251 YFGESNLYLLRITERSIPV------------EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPE  315 (561)
T ss_pred             eeccceEEEEeecccccce------------eccccccceeeeecccCCceeEEecccccceeecccccc---eEEecCC
Confidence              12456777776433321            22556889999999988876654  47888999998652   2333332


Q ss_pred             ceeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe------CCCc
Q 010390          317 CRIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS------DDYT  387 (512)
Q Consensus       317 ~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~------~dg~  387 (512)
                      ..    -..+.|+|.+++++.++-|   |.|.+||..........+.+-  ..+-+.|+||+ +++.+..      .|..
T Consensus       316 ~~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~-qF~~~~~ts~k~~~Dn~  388 (561)
T COG5354         316 QK----RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDG-QFYDTDTTSEKLRVDNS  388 (561)
T ss_pred             cc----cccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCc-eEEEecCCCcccccCcc
Confidence            22    2237899999999887765   679999988765543344433  34556799999 6666553      4789


Q ss_pred             EEEEeCCCCccc
Q 010390          388 VRLWSLENSRCS  399 (512)
Q Consensus       388 i~vwd~~~~~~~  399 (512)
                      |.|||+.....-
T Consensus       389 i~l~~v~g~~~f  400 (561)
T COG5354         389 IKLWDVYGAKVF  400 (561)
T ss_pred             eEEEEecCchhh
Confidence            999999876644

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.35  E-value=8.1e-12  Score=117.22  Aligned_cols=288  Identities=18%  Similarity=0.301  Sum_probs=189.4

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC--CCcEEEEEEecCC---CEEE
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH--QNAIFDLCWIKED---TNIL  124 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~s~~~---~~l~  124 (512)
                      .+++.++..   +|.|+-+|.++.-| +.+-|+.....            +.+ +..|  .-.|-.+.|+|..   ..++
T Consensus        24 ~~~~~a~si---~p~grdi~lAsr~g-l~i~dld~p~~------------ppr-~l~h~tpw~vad~qws~h~a~~~wiV   86 (1081)
T KOG0309|consen   24 DGGFNAVSI---NPSGRDIVLASRQG-LYIIDLDDPFT------------PPR-WLHHITPWQVADVQWSPHPAKPYWIV   86 (1081)
T ss_pred             cCcccceee---ccccchhhhhhhcC-eEEEeccCCCC------------Cce-eeeccCcchhcceecccCCCCceeEE
Confidence            345678888   99999999988776 55667665421            111 1112  2346677888732   3455


Q ss_pred             EEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          125 TASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      +.+ ...-.||++...   ..-..+.+|...|+.+.|+|+.+..+++++.|-.+..||++.......             
T Consensus        87 sts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y-------------  152 (1081)
T KOG0309|consen   87 STS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY-------------  152 (1081)
T ss_pred             ecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee-------------
Confidence            444 444568998543   334456789999999999999999999999999999999987643221             


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                   ....-......++|+-....++++. ....|.+||++.+..+..          ...+|...|+.++
T Consensus       153 -------------s~~~w~s~asqVkwnyk~p~vlass-hg~~i~vwd~r~gs~pl~----------s~K~~vs~vn~~~  208 (1081)
T KOG0309|consen  153 -------------STSSWRSAASQVKWNYKDPNVLASS-HGNDIFVWDLRKGSTPLC----------SLKGHVSSVNSID  208 (1081)
T ss_pred             -------------eeecccccCceeeecccCcchhhhc-cCCceEEEeccCCCcceE----------EecccceeeehHH
Confidence                         1222234566788887666666533 678899999998877654          3455667788888


Q ss_pred             eCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC--EEE--Ee-------cCCCCEEEEec
Q 010390          282 QDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS--HIL--SG-------SSDGNAYVWQV  349 (512)
Q Consensus       282 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~--~g-------~~dg~i~iw~~  349 (512)
                      |..- ...+.+.+.||+|+.||..............   ...+..-.+-|-|+  ++.  .|       ..+..-..|+.
T Consensus       209 fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt---~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~  285 (1081)
T KOG0309|consen  209 FNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT---NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV  285 (1081)
T ss_pred             HhhhhhhhhcccCCCCceeeecccccccccceeccc---cCcceeccccccCceeEeccccCCeeeeeccccchhhhhcc
Confidence            8653 3467888899999999986543332222211   12233344445332  221  11       11233344555


Q ss_pred             CCCCCCCceeccccCCeEEEEeCCCC---------CCeEEEEeCCCcEEEEeCCC
Q 010390          350 NKPQADPIKLKSHDGEVTAVNWCPNE---------AGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       350 ~~~~~~~~~~~~h~~~v~~v~~~~~~---------~~~l~s~~~dg~i~vwd~~~  395 (512)
                      .+...++..+.||++.|....|-..+         ...|+|-+.|..+++|-+.+
T Consensus       286 ~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  286 FDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            55566678899999999887774322         25799999999999998875

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=1.3e-09  Score=99.51  Aligned_cols=290  Identities=14%  Similarity=0.196  Sum_probs=173.0

Q ss_pred             ceEEEEEecCCCcEEEEeeC-----------CCcEEEEECCCCCCccccccccccccceecccc---CCCcEEEEEEecC
Q 010390           54 LAVSFCKTSKNSHIFAVSDE-----------DGYVSLFDSRRKLPSFACHRENAEKARISDWVA---HQNAIFDLCWIKE  119 (512)
Q Consensus        54 ~~v~~~~~s~~~~~latg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~l~~s~~  119 (512)
                      ..|.|+.|||+.+||+|=+.           ...++|||+.++..             .+.+..   ....-.-..||.|
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l-------------krsF~~~~~~~~~WP~frWS~D  316 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL-------------KRSFPVIKSPYLKWPIFRWSHD  316 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch-------------hcceeccCCCccccceEEeccC
Confidence            35677777999999999432           24699999998854             222222   1122234679999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      ++++|--..+ .|.|++.....++..-.-.-..|....|+|.+ ++||         .|-..+.........        
T Consensus       317 dKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~-~llA---------Ywtpe~~~~parvtL--------  377 (698)
T KOG2314|consen  317 DKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTS-NLLA---------YWTPETNNIPARVTL--------  377 (698)
T ss_pred             CceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCc-ceEE---------EEcccccCCcceEEE--------
Confidence            9999966654 59999876644433222234578888999975 5554         343333222111100        


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEe---------ecCCeEEEEeccCccceecccCCCccccccc
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS---------AVNSIVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                           ...+....++...-++-.=..+.|-.+|.+|++--         +.-..+.|+.++......           ..
T Consensus       378 -----~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv-----------e~  441 (698)
T KOG2314|consen  378 -----MEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV-----------EV  441 (698)
T ss_pred             -----EecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc-----------ee
Confidence                 00001111122222222334456666777765422         112245666666655443           23


Q ss_pred             cccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcccCCCC--ceEeeeeceeceeEEEEEECCCCCEEEEe---cCCC
Q 010390          271 ETRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVLQLDKG--PIQHFSGCRIESFYVKSEICPNASHILSG---SSDG  342 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g---~~dg  342 (512)
                      ......|...+|.|.|..+++-+.+   .++.+|.+.+....  .+..+..    .....+.|+|.|++++.+   +..|
T Consensus       442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g  517 (698)
T KOG2314|consen  442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRG  517 (698)
T ss_pred             eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEeccccc
Confidence            3444678999999999987766533   67889988642222  2233332    234568999999999765   4578


Q ss_pred             CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC------CCcEEEEeCCCCc
Q 010390          343 NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD------DYTVRLWSLENSR  397 (512)
Q Consensus       343 ~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~------dg~i~vwd~~~~~  397 (512)
                      .+.++|+............| ...+.+.|.|.| +++++++.      |.--++|+++...
T Consensus       518 ~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtG-RYvvT~ss~wrhk~d~GYri~tfqGrl  576 (698)
T KOG2314|consen  518 DLEFYDTDYADLKDTASPEH-FAATEVEWDPTG-RYVVTSSSSWRHKVDNGYRIFTFQGRL  576 (698)
T ss_pred             ceEEEecchhhhhhccCccc-cccccceECCCC-CEEEEeeehhhhccccceEEEEeecHH
Confidence            89999997533321222223 356789999999 89998874      5556788887544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=3.5e-10  Score=107.95  Aligned_cols=203  Identities=14%  Similarity=0.095  Sum_probs=119.3

Q ss_pred             CCcceEEEEEecCCCcEE---EEeeCCC--cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390           51 TPPLAVSFCKTSKNSHIF---AVSDEDG--YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT  125 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~l---atg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  125 (512)
                      ..+.+-.|   ||||+.+   ++...+|  .|.+.++.++..           ..+..+   .+.....+|+|||+.|+.
T Consensus       185 ~~~~sP~w---SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----------~~lt~~---~g~~~~p~wSPDG~~Laf  247 (428)
T PRK01029        185 SLSITPTW---MHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----------KKILAL---QGNQLMPTFSPRKKLLAF  247 (428)
T ss_pred             CCcccceE---ccCCCceEEEEEEccCCCceEEEEECCCCCc-----------eEeecC---CCCccceEECCCCCEEEE
Confidence            33444556   9999742   3444444  477778876542           223333   344556899999999986


Q ss_pred             EeC-CC----cEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          126 ASG-DQ----TIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       126 ~~~-dg----~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      .+. +|    .+.+|++..+   +.......+.......+|+|++..++++...+|...+|.+......           
T Consensus       248 ~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-----------  316 (428)
T PRK01029        248 ISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-----------  316 (428)
T ss_pred             EECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-----------
Confidence            543 22    3444777653   3333333233344678999999444444445676666644211000           


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC--CeEEEEeccCccceecccCCCcccccccccccc
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--SIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                   .....+......+....|+|+|+.++.++..+  ..|.+||+.+++....            .....
T Consensus       317 -------------~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L------------t~~~~  371 (428)
T PRK01029        317 -------------QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL------------TTSPE  371 (428)
T ss_pred             -------------cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc------------cCCCC
Confidence                         00011112234567789999999998876443  3689999988765421            11123


Q ss_pred             CeeEEEeCCCCCEEEEEec---CCeEEEEEcccC
Q 010390          276 GISSLSQDSNGVFLTASCM---DHRIYLYNVLQL  306 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~  306 (512)
                      .+....|+|||+.|+....   ...|.++|+...
T Consensus       372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        372 NKESPSWAIDSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            4567899999998875443   356888887654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=9.3e-11  Score=99.13  Aligned_cols=280  Identities=13%  Similarity=0.157  Sum_probs=179.3

Q ss_pred             CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-----eeecccCcC------------CCEEEEEeeCCC-CCeEEE
Q 010390          107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-----CTGALMGHT------------GSIKSLCSHPTN-SDILVS  168 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~-~~~l~s  168 (512)
                      ....|+++.|...|.+|++|...|.|.++.-+...     ....+++|.            ..|+.+.|..++ ...++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34679999999999999999999999999754432     223355553            357888886543 456777


Q ss_pred             EeCCCcEEEEeCCCCCCCCCccccceeeecccccccc-----------------cccccccceecccccccEEEEEEeec
Q 010390          169 GSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH-----------------LLSQSKRVSRRKAASMSITSVLYLKD  231 (512)
Q Consensus       169 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~v~~~~~~~~  231 (512)
                      .+.|.+|++|.+............ ...+.....++.                 .............|...+.++.++.+
T Consensus       105 stNdktiKlWKiyeknlk~va~nn-ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENN-LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccc-cccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            788999999999866433221110 000000000100                 01111111123578888999999999


Q ss_pred             CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCC--
Q 010390          232 EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDK--  308 (512)
Q Consensus       232 ~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--  308 (512)
                      ...++++  +|-.|.+|++.-...........+.   .+.....-|++..|+|. ...+.-++..|.|++-|+++...  
T Consensus       184 ~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~---nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd  258 (460)
T COG5170         184 KETLLSA--DDLRINLWNLEIIDGSFNIVDIKPH---NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD  258 (460)
T ss_pred             hheeeec--cceeeeeccccccCCceEEEeccCc---cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence            9988864  6889999998755433322211110   23333455888999985 45666777899999999974211  


Q ss_pred             --CceEe--eee------ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc------------CCe
Q 010390          309 --GPIQH--FSG------CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD------------GEV  366 (512)
Q Consensus       309 --~~~~~--~~~------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~------------~~v  366 (512)
                        ..+..  +.+      ......+..+.|+++|+++++-+. -+|+|||++..+.++.+..-|.            +.|
T Consensus       259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai  337 (460)
T COG5170         259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI  337 (460)
T ss_pred             CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence              11111  111      112234677899999999998764 5699999998887776664442            233


Q ss_pred             ---EEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          367 ---TAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       367 ---~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                         ..+.|+-|. ..+++|+..+..-++-..
T Consensus       338 fdkFeisfSgd~-~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         338 FDKFEISFSGDD-KHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eeeEEEEecCCc-ccccccccccceeeeccc
Confidence               346788887 788899888877777644

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=1.4e-09  Score=105.18  Aligned_cols=215  Identities=12%  Similarity=0.071  Sum_probs=131.4

Q ss_pred             cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      .|.++|.+.+. ...+..+...+....|+|++ +.|+..+.+   ..|.+||+.+++....                   
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~l-------------------  238 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQI-------------------  238 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEEc-------------------
Confidence            47788876554 34454567789999999998 666555433   3688899876543211                   


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                               ....+......|+|+|+.++.+...+|  .|++||+.++....            +..+........|+||
T Consensus       239 ---------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~------------lt~~~~~~~~~~~spD  297 (430)
T PRK00178        239 ---------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR------------VTNHPAIDTEPFWGKD  297 (430)
T ss_pred             ---------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE------------cccCCCCcCCeEECCC
Confidence                     111223446889999999887654555  68888988765432            1222233556789999


Q ss_pred             CCEEEEEec-CC--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-C--CEEEEecCCCCCCCcee
Q 010390          286 GVFLTASCM-DH--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-G--NAYVWQVNKPQADPIKL  359 (512)
Q Consensus       286 ~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iw~~~~~~~~~~~~  359 (512)
                      |+.|+..+. +|  .|+++|+...+...+ ...+    .......|+|+|++|+..+.+ +  .|.+||+.+++..  .+
T Consensus       298 g~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~----~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--~l  370 (430)
T PRK00178        298 GRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVG----NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--IL  370 (430)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCEEEe-ecCC----CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--Ec
Confidence            998776653 33  577777654332211 1111    112346899999999776543 3  4888898876542  22


Q ss_pred             ccccCCeEEEEeCCCCCCeEEEEeC-CC--cEEEEeCCCC
Q 010390          360 KSHDGEVTAVNWCPNEAGKIVTSSD-DY--TVRLWSLENS  396 (512)
Q Consensus       360 ~~h~~~v~~v~~~~~~~~~l~s~~~-dg--~i~vwd~~~~  396 (512)
                      . +........|+|+| +.++..+. +|  .|.++++..+
T Consensus       371 t-~~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~~~~g~  408 (430)
T PRK00178        371 T-DTSLDESPSVAPNG-TMLIYATRQQGRGVLMLVSINGR  408 (430)
T ss_pred             c-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCC
Confidence            2 11222356899999 56655543 33  4666676543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.28  E-value=1.1e-08  Score=105.57  Aligned_cols=253  Identities=13%  Similarity=0.195  Sum_probs=157.1

Q ss_pred             CCCcEEEEEEecCCCEEEEEeC---C---CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC---CCcEEE
Q 010390          107 HQNAIFDLCWIKEDTNILTASG---D---QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR---DGSFAI  177 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~v  177 (512)
                      +.+.-..|+|-.||.++|+.+.   .   ..++||+- .|+...+-..-.+--.+++|.|.| ++||+...   ...|.+
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvF  285 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVF  285 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEE
Confidence            4456678999999999997664   2   57999995 476655555444445678999998 88888765   345666


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                      |.-+..+.-                        ....+.......|..+.|++++..|++.-  ...|.+|-..+..-..
T Consensus       286 fErNGLrhg------------------------eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~--~~~vqLWt~~NYHWYL  339 (928)
T PF04762_consen  286 FERNGLRHG------------------------EFTLRFDPEEEKVIELAWNSDSEILAVWL--EDRVQLWTRSNYHWYL  339 (928)
T ss_pred             EecCCcEee------------------------eEecCCCCCCceeeEEEECCCCCEEEEEe--cCCceEEEeeCCEEEE
Confidence            664422110                        00111223456789999999999999854  3349999998876544


Q ss_pred             cccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcc----cCC------CCceEeee-----------
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVL----QLD------KGPIQHFS-----------  315 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~----~~~------~~~~~~~~-----------  315 (512)
                      ++...        ......+..+.|+|. ...|...+.+|.+..+++.    ...      ...+....           
T Consensus       340 Kqei~--------~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~  411 (928)
T PF04762_consen  340 KQEIR--------FSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRR  411 (928)
T ss_pred             EEEEE--------ccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccc
Confidence            43211        111223445889884 4456666666766655531    110      00111111           


Q ss_pred             ----------eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC-------Ccee----------ccccCCeEE
Q 010390          316 ----------GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD-------PIKL----------KSHDGEVTA  368 (512)
Q Consensus       316 ----------~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~-------~~~~----------~~h~~~v~~  368 (512)
                                .......+..++|++++..+++-..||.|.+|........       ...+          ..-...+..
T Consensus       412 a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (928)
T PF04762_consen  412 AVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQ  491 (928)
T ss_pred             cCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEE
Confidence                      1123456788999999988999999999999985443211       0011          112346788


Q ss_pred             EEeCCCCCCeEEEEeCC---CcEEEEeCCCC
Q 010390          369 VNWCPNEAGKIVTSSDD---YTVRLWSLENS  396 (512)
Q Consensus       369 v~~~~~~~~~l~s~~~d---g~i~vwd~~~~  396 (512)
                      ++|..++ .+++....+   ..+.++++...
T Consensus       492 ~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~  521 (928)
T PF04762_consen  492 LAWLNDD-TLLVLSDSDSNQSKIVLVDIDDS  521 (928)
T ss_pred             EEEeCCC-EEEEEEecCcccceEEEEEeccC
Confidence            8998877 555555544   68888888544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=8e-10  Score=106.41  Aligned_cols=195  Identities=13%  Similarity=0.092  Sum_probs=118.1

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeC-CC--cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE-
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDE-DG--YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT-  125 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-  125 (512)
                      ..++.+..|   ||||+.||..+. ++  .|.+||+.++..           ..+..+.   +......|+|||+.|+. 
T Consensus       217 ~~~~~~p~w---SPDG~~La~~s~~~g~~~L~~~dl~tg~~-----------~~lt~~~---g~~~~~~wSPDG~~La~~  279 (448)
T PRK04792        217 PEPLMSPAW---SPDGRKLAYVSFENRKAEIFVQDIYTQVR-----------EKVTSFP---GINGAPRFSPDGKKLALV  279 (448)
T ss_pred             CCcccCceE---CCCCCEEEEEEecCCCcEEEEEECCCCCe-----------EEecCCC---CCcCCeeECCCCCEEEEE
Confidence            445667777   999998887643 33  588889876532           1222233   23346899999998874 


Q ss_pred             EeCCCc--EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc--EEEEeCCCCCCCCCccccceeeecccc
Q 010390          126 ASGDQT--IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS--FAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       126 ~~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      .+.+|.  |++||+.+++... +..+.......+|+|++..++++...++.  |.++|+.+++...              
T Consensus       280 ~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~--------------  344 (448)
T PRK04792        280 LSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR--------------  344 (448)
T ss_pred             EeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE--------------
Confidence            555664  7788988776543 44455566778999998444455544554  5555665443111              


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                    +...........|+|+++.++.++..++  .|.++|+.++......            .. .....
T Consensus       345 --------------Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt------------~~-~~d~~  397 (448)
T PRK04792        345 --------------LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT------------ST-RLDES  397 (448)
T ss_pred             --------------EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc------------CC-CCCCC
Confidence                          0001112234689999999988765555  4555677665432211            00 11223


Q ss_pred             EEeCCCCCEEEEEecC-C--eEEEEEc
Q 010390          280 LSQDSNGVFLTASCMD-H--RIYLYNV  303 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~d-g--~i~i~d~  303 (512)
                      ..|+|||+.|+....+ +  .+.+++.
T Consensus       398 ps~spdG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        398 PSVAPNGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             ceECCCCCEEEEEEecCCceEEEEEEC
Confidence            4799999988766543 3  3666665

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=5.5e-11  Score=108.18  Aligned_cols=298  Identities=15%  Similarity=0.186  Sum_probs=184.3

Q ss_pred             eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390           39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK  118 (512)
Q Consensus        39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~  118 (512)
                      ...-+..+.||+..|.++..   -.+.+-+++++.|.+|++|.++......      .......+++.|+.+|.++-|..
T Consensus       724 ~~irL~nf~GH~~~iRai~A---idNENSFiSASkDKTVKLWSik~EgD~~------~tsaCQfTY~aHkk~i~~igfL~  794 (1034)
T KOG4190|consen  724 DHIRLCNFTGHQEKIRAIAA---IDNENSFISASKDKTVKLWSIKPEGDEI------GTSACQFTYQAHKKPIHDIGFLA  794 (1034)
T ss_pred             ceeeeecccCcHHHhHHHHh---cccccceeeccCCceEEEEEeccccCcc------ccceeeeEhhhccCcccceeeee
Confidence            34556788999999999988   5677889999999999999987532111      11234677889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeecccC--cCCCEEEEEeeCC-CCCeEEEE-eCCCcEEEEeCCCCCCCCCccccce
Q 010390          119 EDTNILTASGDQTIKIWDAEKKKCTGALMG--HTGSIKSLCSHPT-NSDILVSG-SRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~-~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      +.++++++  ||-|.+||.--++++.....  ..+.+..+...+. +..++++| +...+|+++|.+..+-.....    
T Consensus       795 ~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k----  868 (1034)
T KOG4190|consen  795 DLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK----  868 (1034)
T ss_pred             ccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEE----
Confidence            98888876  78899999888877654421  1223333333333 22444444 778899999998765432211    


Q ss_pred             eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL  274 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  274 (512)
                                        +....+....+.+++..+.|+.+++ +-.+|.|.+.|.++++.+..-..           ..
T Consensus       869 ------------------Vcna~~Pna~~R~iaVa~~GN~lAa-~LSnGci~~LDaR~G~vINswrp-----------me  918 (1034)
T KOG4190|consen  869 ------------------VCNAPGPNALTRAIAVADKGNKLAA-ALSNGCIAILDARNGKVINSWRP-----------ME  918 (1034)
T ss_pred             ------------------eccCCCCchheeEEEeccCcchhhH-HhcCCcEEEEecCCCceeccCCc-----------cc
Confidence                              1111233457889999999999987 44699999999999886542111           00


Q ss_pred             cCeeEEEeCCCCCEEEEEecCCeEEE-EEcccCCCCceEeeeeceeceeEEEEEE-CCCCCEEEEecCCCCEEEEecCCC
Q 010390          275 HGISSLSQDSNGVFLTASCMDHRIYL-YNVLQLDKGPIQHFSGCRIESFYVKSEI-CPNASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       275 ~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~dg~i~iw~~~~~  352 (512)
                      -....++ .|..+.|+....|.++.+ |-..++    +..+...+...+   ..| -.-|.-|++......+.+|.-...
T Consensus       919 cdllqla-apsdq~L~~saldHslaVnWhaldg----imh~q~kpppep---ahflqsvgpSLV~a~~Gn~lgVYad~a~  990 (1034)
T KOG4190|consen  919 CDLLQLA-APSDQALAQSALDHSLAVNWHALDG----IMHLQDKPPPEP---AHFLQSVGPSLVTAQNGNILGVYADSAE  990 (1034)
T ss_pred             chhhhhc-CchhHHHHhhcccceeEeeehhcCC----eeeeccCCCCcc---hhhhhccCceeEEeccCcEEEEEecchh
Confidence            1111111 244456666667777777 654221    111111100000   000 012455677766667777743211


Q ss_pred             CC---CC--ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390          353 QA---DP--IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL  390 (512)
Q Consensus       353 ~~---~~--~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v  390 (512)
                      ..   .+  .......+..++++.-|-+ .-++.|...|.|.+
T Consensus       991 ~ha~stitKiR~d~f~G~lTala~LPLN-~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  991 LHAESTITKIRPDEFPGTLTALAPLPLN-CAFLAGNEHGAIAL 1032 (1034)
T ss_pred             hhhhhhhccccccccCCccceeeecccc-chhhccCCCCceee
Confidence            00   00  1112335678888888887 67778888888865

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.21  E-value=1.3e-08  Score=107.24  Aligned_cols=280  Identities=12%  Similarity=0.087  Sum_probs=164.1

Q ss_pred             ceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceec-cccCCCcEEEEEEecCCCEEEEEe-CCC
Q 010390           54 LAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISD-WVAHQNAIFDLCWIKEDTNILTAS-GDQ  130 (512)
Q Consensus        54 ~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~-~dg  130 (512)
                      ..|++   ++ ++.++++-..++.|++||............. .....-.. -.++-.....+++.+++..|+.+. ..+
T Consensus       571 ~gvav---d~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g-~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~  646 (1057)
T PLN02919        571 GKLAI---DLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTG-EEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH  646 (1057)
T ss_pred             ceEEE---ECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCC-CcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence            35666   65 4667777778889999998654211000000 00000000 011223467899999888766554 457


Q ss_pred             cEEEEeCCCCeeeecccC----------c-------CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          131 TIKIWDAEKKKCTGALMG----------H-------TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~----------h-------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      .|+++|+.++.. .++.+          .       -...+.++++|+++.++++.+.++.|++||..++...... .  
T Consensus       647 ~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~-G--  722 (1057)
T PLN02919        647 ALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS-G--  722 (1057)
T ss_pred             eEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe-c--
Confidence            799999877643 22211          0       1134678999966578888888899999998765321100 0  


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc-CCCc-cccccc-
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA-WPHA-ESSSAK-  270 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~-~~~~-~~~~~~-  270 (512)
                               .+....... .......-.....++++|++..++++...++.|++||+.++....... .+.. ...... 
T Consensus       723 ---------~G~~~~~~g-~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG  792 (1057)
T PLN02919        723 ---------DGYERNLNG-SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG  792 (1057)
T ss_pred             ---------CCccccCCC-CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence                     000000000 000011123567899999999888878788999999998765321110 0000 000000 


Q ss_pred             -------cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece------------eceeEEEEEECCC
Q 010390          271 -------ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR------------IESFYVKSEICPN  331 (512)
Q Consensus       271 -------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------~~~~~~~~~~s~~  331 (512)
                             .........++++++|.++++-..++.|++||..+..   +..+.+..            .-.....++++++
T Consensus       793 ~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~---v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d  869 (1057)
T PLN02919        793 DHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR---VTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN  869 (1057)
T ss_pred             CCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe---EEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence                   0111235689999999988888889999999985432   11111110            0123556899999


Q ss_pred             CCEEEEecCCCCEEEEecCCCCC
Q 010390          332 ASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       332 ~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      |+++++-+.++.|++||+.++..
T Consensus       870 G~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        870 GRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCEEEEECCCCEEEEEECCCCcc
Confidence            99999989999999999988654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.20  E-value=3.8e-10  Score=103.89  Aligned_cols=210  Identities=11%  Similarity=0.138  Sum_probs=142.5

Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEE---eecCCEEEEE
Q 010390          162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY---LKDEVSIATA  238 (512)
Q Consensus       162 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~  238 (512)
                      ...++|....||.+++||...++....+................+.....        .....++.+   ...+..+++-
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s--------~~k~~~~~~~~~~s~~t~~lvl   75 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYS--------PMKWLSLEKAKKASLDTSMLVL   75 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccc--------hHHHHhHHHHhhccCCceEEEe
Confidence            34789999999999999998776554332211111000000000000000        000111111   0123455666


Q ss_pred             eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece
Q 010390          239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR  318 (512)
Q Consensus       239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  318 (512)
                      |...|.|.+|+...++.....         .-..|.+.|.++.++.+-..|.+++.|+.+..|+....  ..+...... 
T Consensus        76 gt~~g~v~~ys~~~g~it~~~---------st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--~~~~~~~~~-  143 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEITAKL---------STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--VIIRIWKEQ-  143 (541)
T ss_pred             ecCCccEEEEEecCCeEEEEE---------ecCCCCCcceeeecccccCceEecCCceeEEEEecccc--eeeeeeccC-
Confidence            888999999999998877654         35678889999999999999999999999999997552  223333322 


Q ss_pred             eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCC-----CCCeEEEEeCCCcEEEEeC
Q 010390          319 IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN-----EAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       319 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~~l~s~~~dg~i~vwd~  393 (512)
                       ...+.+++++||+..+++++  +.|.+||+++.+. +..+.+|.++|+++.|.-+     |..+|.+...+.-+.+|-+
T Consensus       144 -~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  144 -KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             -CCccceEEEcCCCCEEEecc--ceEEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence             23356789999999999986  6799999999876 5789999999999999876     5345666667778889987


Q ss_pred             CC
Q 010390          394 EN  395 (512)
Q Consensus       394 ~~  395 (512)
                      +.
T Consensus       220 ~~  221 (541)
T KOG4547|consen  220 EK  221 (541)
T ss_pred             Ec
Confidence            66

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=5.1e-10  Score=105.13  Aligned_cols=236  Identities=13%  Similarity=0.104  Sum_probs=164.9

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---------------eeecccCcCCCEEEEEeeCCCCCeEEEEeCC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK---------------CTGALMGHTGSIKSLCSHPTNSDILVSGSRD  172 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  172 (512)
                      .....++.|+....+|+.|+.||.++|..+.+..               .-+++.+|+..|.-+.|+... +.|-+...+
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~   92 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTS   92 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCC
Confidence            3567899999999999999999999999876532               124678999999999999876 889999999


Q ss_pred             CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC
Q 010390          173 GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN  252 (512)
Q Consensus       173 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~  252 (512)
                      |.|.+|-+-.+.-....                         ......+-|.+++|+.+|..+..+- .||.|.+=.++.
T Consensus        93 GlIiVWmlykgsW~EEM-------------------------iNnRnKSvV~SmsWn~dG~kIcIvY-eDGavIVGsvdG  146 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEM-------------------------INNRNKSVVVSMSWNLDGTKICIVY-EDGAVIVGSVDG  146 (1189)
T ss_pred             ceEEEEeeecccHHHHH-------------------------hhCcCccEEEEEEEcCCCcEEEEEE-ccCCEEEEeecc
Confidence            99999988755422111                         1112245789999999999988754 799888877665


Q ss_pred             ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC-----CCceEeeeece--eceeEEE
Q 010390          253 LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD-----KGPIQHFSGCR--IESFYVK  325 (512)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~--~~~~~~~  325 (512)
                      .+.--.            .........+.|++|.+.++.+-.+|.+.+||....-     ........+..  ....+-.
T Consensus       147 NRIwgK------------eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~  214 (1189)
T KOG2041|consen  147 NRIWGK------------ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE  214 (1189)
T ss_pred             ceecch------------hcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence            443211            1111224578899999999888899999999964311     11111111100  0001112


Q ss_pred             EEE--------CCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390          326 SEI--------CPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD  385 (512)
Q Consensus       326 ~~~--------s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  385 (512)
                      +.|        -|+...|+.+-.+|.+.|..-.+...+...-.+  ..|..+.|+++| ..|+.+|.|
T Consensus       215 i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G-~vLAvcG~~  279 (1189)
T KOG2041|consen  215 IEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNG-AVLAVCGND  279 (1189)
T ss_pred             eeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCC-cEEEEccCc
Confidence            222        257888999999999999876666554333333  678999999999 899998865

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=1.5e-08  Score=96.47  Aligned_cols=232  Identities=14%  Similarity=0.107  Sum_probs=145.9

Q ss_pred             ecCCccCCcceEEEEEe-------cCC--CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE
Q 010390           45 EHHGEETPPLAVSFCKT-------SKN--SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC  115 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~-------s~~--~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  115 (512)
                      ...-|...|+.|.|.+.       ||.  .-+||++...|.|.|||......             +..+..|..+|..++
T Consensus        50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-------------~~~l~~~~~~~qdl~  116 (1062)
T KOG1912|consen   50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-------------INWLSHSNDSVQDLC  116 (1062)
T ss_pred             ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-------------hhhhcCCCcchhhee
Confidence            34458889999999653       322  23788899999999999876533             666788899999999


Q ss_pred             Eec---CC-CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          116 WIK---ED-TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       116 ~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      |-+   +. ..|+.-....+|.+|+..+|+.............|+.+.|-+...+..-+..|.+.+-+.-..........
T Consensus       117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk  196 (1062)
T KOG1912|consen  117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK  196 (1062)
T ss_pred             eeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence            988   33 45666667789999999999999888776677888999998877787777788888877654443332222


Q ss_pred             cceeeecccccccccccc---cccceeccccc---ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          192 ESFVFSSAVVKGAHLLSQ---SKRVSRRKAAS---MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                      ...+.+. .....++...   +..........   -....++|+|.-+.++... ....+.++|++-.........    
T Consensus       197 ~~qI~sd-~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvpi----  270 (1062)
T KOG1912|consen  197 EFQITSD-HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVPI----  270 (1062)
T ss_pred             eEEEecC-ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEEe----
Confidence            2222111 1110110000   00000000000   0122356677655555444 578899999987666554321    


Q ss_pred             ccccccccccCeeEEEeCCCC--CEEEEEecCCeEEEEE
Q 010390          266 SSSAKETRLHGISSLSQDSNG--VFLTASCMDHRIYLYN  302 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d  302 (512)
                             ..+.+.-+.+-|++  ..|++...||.+.+|-
T Consensus       271 -------er~~akfv~vlP~~~rd~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  271 -------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV  302 (1062)
T ss_pred             -------ccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence                   22334445555544  4677777888877775

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.19  E-value=8.1e-08  Score=86.43  Aligned_cols=173  Identities=15%  Similarity=0.090  Sum_probs=127.5

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC-cEEEEeCCCCee
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ-TIKIWDAEKKKC  142 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~  142 (512)
                      +|+++|..+ .|...|.+...+..               .--+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++.
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~---------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~  394 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYS---------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV  394 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCee---------------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE
Confidence            688888887 56787877654421               1236778899999988888999999999 899999988865


Q ss_pred             eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390          143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS  222 (512)
Q Consensus       143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (512)
                      .. +...-+.|.++..+++| ..++.+-....|.+.|+.++.....                           -+...+-
T Consensus       395 kr-~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~i---------------------------dkS~~~l  445 (668)
T COG4946         395 KR-IEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLI---------------------------DKSEYGL  445 (668)
T ss_pred             EE-eeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEe---------------------------cccccce
Confidence            44 44566789999999998 8888888888999999998765331                           1223457


Q ss_pred             EEEEEEeecCCEEEEEe---ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe
Q 010390          223 ITSVLYLKDEVSIATAS---AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC  293 (512)
Q Consensus       223 v~~~~~~~~~~~l~~~g---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  293 (512)
                      |+.+.|+|++++++.+=   ..-..|+++|+.+++.....            .....=.+-+|+|++++|.--+
T Consensus       446 Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT------------T~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         446 ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT------------TPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec------------CCcccccCcccCCCCcEEEEEe
Confidence            99999999999998742   23347999999987765321            1222234567888998877554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.18  E-value=2e-08  Score=105.85  Aligned_cols=272  Identities=11%  Similarity=0.035  Sum_probs=160.5

Q ss_pred             EEEEEecC-CCEEEEEeCCCcEEEEeCCCCeeeecccC--------------cCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390          112 FDLCWIKE-DTNILTASGDQTIKIWDAEKKKCTGALMG--------------HTGSIKSLCSHPTNSDILVSGSRDGSFA  176 (512)
Q Consensus       112 ~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------h~~~v~~l~~~~~~~~~l~s~~~dg~i~  176 (512)
                      ..++++++ +..+++-..++.|++||... +.+..+.+              .-.....+++.++++.++++-..++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            45788874 55666777788999999754 33333321              1123578899987733444445567899


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ  256 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~  256 (512)
                      ++|+.++..........        .+. .. ....... ...-.....++++|++..++++...++.|++||..++...
T Consensus       650 ~id~~~~~V~tlag~G~--------~g~-~~-~gg~~~~-~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~  718 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGT--------KGS-DY-QGGKKGT-SQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR  718 (1057)
T ss_pred             EEecCCCEEEEEeccCc--------ccC-CC-CCChhhh-HhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE
Confidence            99986543211000000        000 00 0000000 0001234689999976667666767899999998776543


Q ss_pred             ecccCCCccc---cccccccccCeeEEEeCCCCCEEEE-EecCCeEEEEEcccCCCCceE-----------eeeec----
Q 010390          257 ITQAWPHAES---SSAKETRLHGISSLSQDSNGVFLTA-SCMDHRIYLYNVLQLDKGPIQ-----------HFSGC----  317 (512)
Q Consensus       257 ~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~-----------~~~~~----  317 (512)
                      ..........   .............++++|++..|++ -+.++.|++||+.+.....+.           .+...    
T Consensus       719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g  798 (1057)
T PLN02919        719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG  798 (1057)
T ss_pred             EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence            2110000000   0000111234677999999985554 456689999998653211100           00000    


Q ss_pred             --eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec--------------cccCCeEEEEeCCCCCCeEEE
Q 010390          318 --RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK--------------SHDGEVTAVNWCPNEAGKIVT  381 (512)
Q Consensus       318 --~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~--------------~h~~~v~~v~~~~~~~~~l~s  381 (512)
                        ..-.....++++++|+++++-..++.|++||..++...  .+.              +.-.....++++++| +++++
T Consensus       799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~--tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVa  875 (1057)
T PLN02919        799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT--TLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVA  875 (1057)
T ss_pred             hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE--EEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEE
Confidence              00112346889999998899889999999998765431  111              122357889999999 78999


Q ss_pred             EeCCCcEEEEeCCCCcc
Q 010390          382 SSDDYTVRLWSLENSRC  398 (512)
Q Consensus       382 ~~~dg~i~vwd~~~~~~  398 (512)
                      -+.++.|++||+.+++.
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            99999999999999875

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=3.7e-09  Score=96.82  Aligned_cols=253  Identities=12%  Similarity=0.133  Sum_probs=160.1

Q ss_pred             ceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC--CEEEE-----E
Q 010390           54 LAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED--TNILT-----A  126 (512)
Q Consensus        54 ~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~~l~s-----~  126 (512)
                      ++.+|   ++|..+.|-- ..+.+.+|+..+...              ..-+-|...|+.+.++|..  ..+++     .
T Consensus       129 W~~qf---s~dEsl~arl-v~nev~f~~~~~f~~--------------~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k  190 (566)
T KOG2315|consen  129 WVPQF---SIDESLAARL-VSNEVQFYDLGSFKT--------------IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK  190 (566)
T ss_pred             ccccc---ccchhhhhhh-hcceEEEEecCCccc--------------eeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence            45555   8877654433 355899999876321              1123467889999999863  34442     4


Q ss_pred             eCCCcEEEEeCCCCeeeecc---cCcCCCEEEEEeeCCCCCeEEEEeCC-----------CcEEEEeCCCCCCCCCcccc
Q 010390          127 SGDQTIKIWDAEKKKCTGAL---MGHTGSIKSLCSHPTNSDILVSGSRD-----------GSFAIWDLRCKSSPKSNCAE  192 (512)
Q Consensus       127 ~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~d-----------g~i~vwd~~~~~~~~~~~~~  192 (512)
                      |.-+.|+||.......-..+   .-....=-.+.|++.+..+|+.++.|           .++++.++......      
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~------  264 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS------  264 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE------
Confidence            55678999987633221111   11112223577888776666555432           34555555421111      


Q ss_pred             ceeeecccccccccccccccceecccccccEEEEEEeecCCEEEE-EeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390          193 SFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIAT-ASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE  271 (512)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  271 (512)
                                            .-....++|.++.|++++..+++ -|..-..+.|||++..-              .+.
T Consensus       265 ----------------------V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--------------v~d  308 (566)
T KOG2315|consen  265 ----------------------VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--------------VFD  308 (566)
T ss_pred             ----------------------EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--------------eEe
Confidence                                  11133679999999999987654 45566789999988543              233


Q ss_pred             ccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC------CC
Q 010390          272 TRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS------DG  342 (512)
Q Consensus       272 ~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------dg  342 (512)
                      ...++-+++-|+|.|++++.++.+   |.|-+||+.+  .+.+..+....    .+-+.|+|||+++++++.      |+
T Consensus       309 f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdN  382 (566)
T KOG2315|consen  309 FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDN  382 (566)
T ss_pred             CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccccCC----ceEEEEcCCCcEEEEEeccccEEecC
Confidence            344667889999999999988855   8999999876  33333333322    233799999999988875      67


Q ss_pred             CEEEEecCCCCCCCceeccccCCeEEEEeCCCC
Q 010390          343 NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE  375 (512)
Q Consensus       343 ~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~  375 (512)
                      .++||++.........+.   .....+.|-|..
T Consensus       383 g~KiwhytG~~l~~~~f~---sEL~qv~W~P~~  412 (566)
T KOG2315|consen  383 GIKIWHYTGSLLHEKMFK---SELLQVEWRPFN  412 (566)
T ss_pred             CeEEEEecCceeehhhhh---HhHhheeeeecC
Confidence            899999976433222221   157788888754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.17  E-value=1.7e-07  Score=97.15  Aligned_cols=269  Identities=13%  Similarity=0.150  Sum_probs=165.9

Q ss_pred             cCCCcEEEEEEecCCCEEEEEeCCCcEEEE----eCCCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          106 AHQNAIFDLCWIKEDTNILTASGDQTIKIW----DAEKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iw----d~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      ...+.|.++.|.++...|+.+..+|.|.+.    +..+.  +.+..   -...|.+++|+||+ .+|+....+++|.+.+
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDE-ELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCc-CEEEEEeCCCEEEEEe
Confidence            345789999999999999999999999999    55443  23333   34689999999998 7888888888888764


Q ss_pred             CC----CCCCCCCcc-ccceeeeccccc--------ccccccc--------cccceecccccccEEEEEEeecCCEEEEE
Q 010390          180 LR----CKSSPKSNC-AESFVFSSAVVK--------GAHLLSQ--------SKRVSRRKAASMSITSVLYLKDEVSIATA  238 (512)
Q Consensus       180 ~~----~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  238 (512)
                      -.    ......... ......+..+.+        .+.....        ........ .+..-..++|-.||.+++++
T Consensus       149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVs  227 (928)
T PF04762_consen  149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVS  227 (928)
T ss_pred             ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEE
Confidence            22    111111000 000000000000        0000000        00011122 45577889999999999986


Q ss_pred             ee--cC---CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec---CCeEEEEEcccCCCCc
Q 010390          239 SA--VN---SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM---DHRIYLYNVLQLDKGP  310 (512)
Q Consensus       239 g~--~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~  310 (512)
                      .-  ..   ..+++|+-+ +.....           .+.-.+--.+++|.|.|+++++...   ...|.+|.-+......
T Consensus       228 s~~~~~~~~R~iRVy~Re-G~L~st-----------SE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge  295 (928)
T PF04762_consen  228 SVEPETGSRRVIRVYSRE-GELQST-----------SEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE  295 (928)
T ss_pred             EEEcCCCceeEEEEECCC-ceEEec-----------cccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee
Confidence            64  22   589999976 332221           1111122457899999999998764   3567777754332222


Q ss_pred             eEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCc-eec-cccCCeEEEEeCCCCCCeEEEEeCCCcE
Q 010390          311 IQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI-KLK-SHDGEVTAVNWCPNEAGKIVTSSDDYTV  388 (512)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~-~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i  388 (512)
                       ..+........+..+.|++|+..||....|. |++|-..+..-.++ .+. .....+..+.|+|..+..|.....+|.+
T Consensus       296 -F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~  373 (928)
T PF04762_consen  296 -FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY  373 (928)
T ss_pred             -EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence             2222223344578899999999999977665 99998877643211 222 2233455699999988888888887777


Q ss_pred             EEEeC
Q 010390          389 RLWSL  393 (512)
Q Consensus       389 ~vwd~  393 (512)
                      ..+++
T Consensus       374 ~~~~~  378 (928)
T PF04762_consen  374 EIYDF  378 (928)
T ss_pred             EEEEE
Confidence            65443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.16  E-value=4.9e-08  Score=82.62  Aligned_cols=216  Identities=15%  Similarity=0.165  Sum_probs=135.2

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK  141 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  141 (512)
                      +.||++||+-- |..|.|=..++.-....        ......+.-.-.=+-++||||+..||.+...|+|+++|+....
T Consensus         6 ~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~--------~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen    6 SSDGKLLAILQ-DQCIEIRSAKDDFSSII--------GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             cCCCcEEEEEe-ccEEEEEeccCCchhee--------EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence            78999988864 67788877655432110        0111122223345679999999999999999999999987543


Q ss_pred             eeecccC-------cCCCEEEEEeeCCC-----CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390          142 CTGALMG-------HTGSIKSLCSHPTN-----SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ  209 (512)
Q Consensus       142 ~~~~~~~-------h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (512)
                      + ..+..       -...|..+.|.+..     ...|+.-..+|.++-|-+..+..........+               
T Consensus        77 l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf---------------  140 (282)
T PF15492_consen   77 L-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF---------------  140 (282)
T ss_pred             e-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE---------------
Confidence            3 22221       23467777775432     23677777788888877643322211111111               


Q ss_pred             cccceecccccccEEEEEEeecCCEEEEEeecCC----------eEEEEeccCccceecccCCCcccc------------
Q 010390          210 SKRVSRRKAASMSITSVLYLKDEVSIATASAVNS----------IVKFWDTRNLKAQITQAWPHAESS------------  267 (512)
Q Consensus       210 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~------------  267 (512)
                          .-.......|.++.|+|..+.|+++|....          -+..|.+-++..-...........            
T Consensus       141 ----sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~  216 (282)
T PF15492_consen  141 ----SFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI  216 (282)
T ss_pred             ----EecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence                011123568999999999999998776443          366677665543332211110000            


Q ss_pred             ------ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC
Q 010390          268 ------SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL  306 (512)
Q Consensus       268 ------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  306 (512)
                            .........|..|..+|||..|++...+|.|.+|++-..
T Consensus       217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence                  011234567999999999999999999999999998654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.15  E-value=7.6e-10  Score=97.16  Aligned_cols=174  Identities=16%  Similarity=0.169  Sum_probs=114.0

Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY  301 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  301 (512)
                      ....+..++.++.++++. .+....+++.+.........        ....-...-+++.+..+.....++..-|.++-+
T Consensus        64 a~~~~~~s~~~~llAv~~-~~K~~~~f~~~~~~~~~kl~--------~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~  134 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVAT-SSKQRAVFDYRENPKGAKLL--------DVSCVPKRPTAISFIREDTSVLVADKAGDVYSF  134 (390)
T ss_pred             cccccccCCCceEEEEEe-CCCceEEEEEecCCCcceee--------eEeecccCcceeeeeeccceEEEEeecCCceee
Confidence            344555667777776644 45666666666543211100        000111123344454455555555555555555


Q ss_pred             EcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEE
Q 010390          302 NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT  381 (512)
Q Consensus       302 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s  381 (512)
                      |+...........-+|  .+.+..++++||+++|+++..|..|++-.+.........+.||+.-|..++.-++  +.|+|
T Consensus       135 di~s~~~~~~~~~lGh--vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS  210 (390)
T KOG3914|consen  135 DILSADSGRCEPILGH--VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLS  210 (390)
T ss_pred             eeecccccCcchhhhh--hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeee
Confidence            5433222222233333  4668889999999999999999999999887766555667899999999999886  47999


Q ss_pred             EeCCCcEEEEeCCCCcccccccCcccc
Q 010390          382 SSDDYTVRLWSLENSRCSSMRSPSSVR  408 (512)
Q Consensus       382 ~~~dg~i~vwd~~~~~~~~~~~~~~~~  408 (512)
                      +|.|++|++||+.+|+++.++......
T Consensus       211 ~sGD~tlr~Wd~~sgk~L~t~dl~s~~  237 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSGKLLDTCDLSSLV  237 (390)
T ss_pred             cCCCCcEEEEecccCCcccccchhHhh
Confidence            999999999999999999886644443

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.15  E-value=2.3e-08  Score=95.02  Aligned_cols=282  Identities=12%  Similarity=0.034  Sum_probs=157.9

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      .+..+++++.+|.|.-+|..+++..-             .............  .++..++.++.++.+..+|..+|+.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W-------------~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~  128 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLW-------------RVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKEL  128 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEee-------------eecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEe
Confidence            46678888889999999988775421             1111111111122  25678888889999999999999988


Q ss_pred             ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390          144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI  223 (512)
Q Consensus       144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (512)
                      ...... +.+.+.-.. .+ ..++.++.+|.|..||.++++...........                  ......    
T Consensus       129 W~~~~~-~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~------------------~~~~~~----  183 (377)
T TIGR03300       129 WRAKLS-SEVLSPPLV-AN-GLVVVRTNDGRLTALDAATGERLWTYSRVTPA------------------LTLRGS----  183 (377)
T ss_pred             eeeccC-ceeecCCEE-EC-CEEEEECCCCeEEEEEcCCCceeeEEccCCCc------------------eeecCC----
Confidence            766532 223221111 13 46777788999999999888754432110000                  000000    


Q ss_pred             EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe-eEEEeCCCCCEEEEEecCCeEEEEE
Q 010390          224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI-SSLSQDSNGVFLTASCMDHRIYLYN  302 (512)
Q Consensus       224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d  302 (512)
                      .+.... ++ .+++ +..++.+..+|.++++................ .....+ ....+  .+..+++++.+|.++.||
T Consensus       184 ~sp~~~-~~-~v~~-~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~-~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       184 ASPVIA-DG-GVLV-GFAGGKLVALDLQTGQPLWEQRVALPKGRTEL-ERLVDVDGDPVV--DGGQVYAVSYQGRVAALD  257 (377)
T ss_pred             CCCEEE-CC-EEEE-ECCCCEEEEEEccCCCEeeeeccccCCCCCch-hhhhccCCccEE--ECCEEEEEEcCCEEEEEE
Confidence            011111 22 3443 55689999999998876654321110000000 000000 01111  245777888899999999


Q ss_pred             cccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEE
Q 010390          303 VLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~  382 (512)
                      ..+++.  +-....   .. .  ......+..+++++.+|.++.+|..+++..............+...  .+ ..|+++
T Consensus       258 ~~tG~~--~W~~~~---~~-~--~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g-~~l~~~  326 (377)
T TIGR03300       258 LRSGRV--LWKRDA---SS-Y--QGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VG-GYLVVG  326 (377)
T ss_pred             CCCCcE--EEeecc---CC-c--cCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--EC-CEEEEE
Confidence            876432  111111   11 1  1111346778888889999999998876532111111111222222  24 588899


Q ss_pred             eCCCcEEEEeCCCCcccccc
Q 010390          383 SDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       383 ~~dg~i~vwd~~~~~~~~~~  402 (512)
                      +.||.|+++|..+|+.+...
T Consensus       327 ~~~G~l~~~d~~tG~~~~~~  346 (377)
T TIGR03300       327 DFEGYLHWLSREDGSFVARL  346 (377)
T ss_pred             eCCCEEEEEECCCCCEEEEE
Confidence            99999999999999877543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.15  E-value=3.7e-08  Score=89.44  Aligned_cols=269  Identities=10%  Similarity=0.001  Sum_probs=151.2

Q ss_pred             CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEe---------CCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          130 QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS---------RDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      ++|.+.|..+++.+..+..-..+- .+ ++|++..+.++.+         .+..|.+||..+.+..........      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~------   98 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG------   98 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC------
Confidence            889999999999988886544333 34 9999855555666         688999999998775543321000      


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeec-CCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                    ...........++++|+|+.++++.-. +..|.+.|+.+.+.+....-+.            +..-
T Consensus        99 --------------p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~------------~~~v  152 (352)
T TIGR02658        99 --------------PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD------------CYHI  152 (352)
T ss_pred             --------------chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC------------CcEE
Confidence                          000012234578899999999987644 8999999999988776442211            1111


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-ceecee-EEEEEECC-CCCEEEEecCCCCEEEEecCCCCCC-
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-CRIESF-YVKSEICP-NASHILSGSSDGNAYVWQVNKPQAD-  355 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~-~~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~-  355 (512)
                      ...+++..+  +-+.||......+............- +..... ...-.|.+ +|+++..... |.|.+.|+...... 
T Consensus       153 y~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~  229 (352)
T TIGR02658       153 FPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF  229 (352)
T ss_pred             EEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee
Confidence            111111111  11334444443332211111111000 000000 00113345 7888877765 99999997543211 


Q ss_pred             ---Cceec-------cccCCeEEEEeCCCCCCeEEEEe----------CCCcEEEEeCCCCcccccccCccccceeeeec
Q 010390          356 ---PIKLK-------SHDGEVTAVNWCPNEAGKIVTSS----------DDYTVRLWSLENSRCSSMRSPSSVRRRVMAIP  415 (512)
Q Consensus       356 ---~~~~~-------~h~~~v~~v~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  415 (512)
                         ...+.       -..+.+.-+++++++ +.+....          ..+.|.++|..+++.+....            
T Consensus       230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~------------  296 (352)
T TIGR02658       230 LPAIEAFTEAEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE------------  296 (352)
T ss_pred             cceeeeccccccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe------------
Confidence               11111       123345559999999 5555432          22579999999888766422            


Q ss_pred             cchhcccccCCCCcccccCCCCcCCCchh-cccCCCCCCCCCCeecCc
Q 010390          416 STECRKLFMNGEPGWLAKGSDRSYNSDDV-LNQINSSDPKNMPIIRTP  462 (512)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~  462 (512)
                               .+...+     .++++||++ ++.........+..+...
T Consensus       297 ---------vG~~~~-----~iavS~Dgkp~lyvtn~~s~~VsViD~~  330 (352)
T TIGR02658       297 ---------LGHEID-----SINVSQDAKPLLYALSTGDKTLYIFDAE  330 (352)
T ss_pred             ---------CCCcee-----eEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence                     233334     678888888 555455455555555554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.13  E-value=3.6e-08  Score=89.45  Aligned_cols=221  Identities=14%  Similarity=0.120  Sum_probs=137.2

Q ss_pred             CcEEEEEEecC--CCEEEE-----EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEe----------C
Q 010390          109 NAIFDLCWIKE--DTNILT-----ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS----------R  171 (512)
Q Consensus       109 ~~V~~l~~s~~--~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~  171 (512)
                      ..|....|+|.  +..|+.     .+.+++++||.+..+..+.+-.-....=..+.|.+.+..+++-.-          .
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            46777778884  333442     456778888888766554433222222335677777733333221          1


Q ss_pred             CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE-eecCCeEEEEec
Q 010390          172 DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA-SAVNSIVKFWDT  250 (512)
Q Consensus       172 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-g~~dg~i~iwd~  250 (512)
                      ...+.+++++......                            ...-.++|...+|.|.++.++++ |..+-.+.++|+
T Consensus       254 esnLyl~~~~e~~i~V----------------------------~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         254 ESNLYLLRITERSIPV----------------------------EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             cceEEEEeecccccce----------------------------eccccccceeeeecccCCceeEEecccccceeeccc
Confidence            2345666665322111                            11336789999999988877654 478889999999


Q ss_pred             cCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcccCCCCceEeeeeceeceeEEEEE
Q 010390          251 RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE  327 (512)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  327 (512)
                      +..- .             .......=+.+.|+|.+++++.++.|   |.|.+||.... ......+.+..    ..-+.
T Consensus       306 r~Nl-~-------------~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r-f~~~~~~~~~n----~s~~~  366 (561)
T COG5354         306 RGNL-R-------------FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR-FKVAGAFNGLN----TSYCD  366 (561)
T ss_pred             ccce-E-------------EecCCcccccccccCcccEEEEecCCccccceEEeccCCc-eEEEEEeecCC----ceEee
Confidence            8762 1             22222334568899999999998866   78999997431 11121233322    22368


Q ss_pred             ECCCCCEEEEec------CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390          328 ICPNASHILSGS------SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY  386 (512)
Q Consensus       328 ~s~~~~~l~~g~------~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg  386 (512)
                      |+|+++++.+..      .|..|.|||+......         ..+.+.|.|.+ ++..+.+.+.
T Consensus       367 wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~-~~~ttsSs~~  421 (561)
T COG5354         367 WSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---------ELTNITWDPSG-QYVTTSSSCP  421 (561)
T ss_pred             ccCCceEEEecCCCcccccCcceEEEEecCchhh---------hhhhccccCCc-ccceeeccCC
Confidence            999999997764      3778999999764331         46678898887 5655555544

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.13  E-value=1.2e-09  Score=90.13  Aligned_cols=201  Identities=12%  Similarity=0.113  Sum_probs=120.5

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-ee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-CT  143 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~  143 (512)
                      ...|+++..++.+...............+. ....+...+..|.++-.+-+.+-.+..++++..||.+.+.+.+... ..
T Consensus        47 ~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt-~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~  125 (319)
T KOG4714|consen   47 EYILFTGETSSQIISLGKGRGRCISLWERD-DGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALM  125 (319)
T ss_pred             hheeecccchhheeeeccceEEEechhhcc-cCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhh
Confidence            346777777776666654333211111110 1112233333444443333334456789999999999999876521 11


Q ss_pred             ecccCcCCCEEEEEeeCCCCCeEEEEeC-----CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccc
Q 010390          144 GALMGHTGSIKSLCSHPTNSDILVSGSR-----DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA  218 (512)
Q Consensus       144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (512)
                      ..+..-...-.+.++...+ +.+.++..     -+..+.|+++.......                           -..
T Consensus       126 ~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~---------------------------~~~  177 (319)
T KOG4714|consen  126 SRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIP---------------------------SKK  177 (319)
T ss_pred             hhcccccccccccceeecc-cEEecCCcceEeeccceeeecccccccccc---------------------------ccc
Confidence            1111111111222333333 44444332     23455566553322111                           111


Q ss_pred             ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCe
Q 010390          219 ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHR  297 (512)
Q Consensus       219 ~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~  297 (512)
                      ....|.+++-+|..+.++++|+.||.+.+||.++...+..          .+..|+.+|..+.|+| ++..|++++.||.
T Consensus       178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S----------~l~ahk~~i~eV~FHpk~p~~Lft~sedGs  247 (319)
T KOG4714|consen  178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS----------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGS  247 (319)
T ss_pred             ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH----------HHHHhhhhhhheeccCCCchheeEecCCCc
Confidence            1234899999999999999999999999999998754443          5788889999999998 5679999999999


Q ss_pred             EEEEEcc
Q 010390          298 IYLYNVL  304 (512)
Q Consensus       298 i~i~d~~  304 (512)
                      +..||..
T Consensus       248 lw~wdas  254 (319)
T KOG4714|consen  248 LWHWDAS  254 (319)
T ss_pred             EEEEcCC
Confidence            9999965

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.12  E-value=8.9e-09  Score=97.90  Aligned_cols=300  Identities=13%  Similarity=0.135  Sum_probs=183.4

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC------------C
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE------------D  120 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~------------~  120 (512)
                      -.++.|   +|.| +||.|+.. .|.+-|..+-             +.++.+..|+..|+.+.|.|-            .
T Consensus        18 ~~A~Dw---~~~G-LiAygshs-lV~VVDs~s~-------------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~   79 (1062)
T KOG1912|consen   18 RNAADW---SPSG-LIAYGSHS-LVSVVDSRSL-------------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQ   79 (1062)
T ss_pred             cccccc---Cccc-eEEEecCc-eEEEEehhhh-------------hhhhccccCccceeEEEeccCCCchhccCccccc
Confidence            457777   7755 78888754 7888887654             347788899999999999872            1


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCC---CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN---SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      -.|+++.-.|.|.+||...+..+..+..|..++..++|-+..   ...|++-....+|.+|+..+++....         
T Consensus        80 lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk---------  150 (1062)
T KOG1912|consen   80 LLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK---------  150 (1062)
T ss_pred             eeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec---------
Confidence            246677778999999999999999999999999999997632   24666667778999999998875442         


Q ss_pred             cccccccccccccccceecccccccEEEEEEeec-CCEEEEEeecCCeEEEEeccCccce------ecccCCCccccc-c
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD-EVSIATASAVNSIVKFWDTRNLKAQ------ITQAWPHAESSS-A  269 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~g~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~-~  269 (512)
                                        .........|+.+.|- .+.+.+.| ..|.+.+-+.-.....      .....++..... .
T Consensus       151 ------------------~~ys~~iLs~f~~DPfd~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le  211 (1062)
T KOG1912|consen  151 ------------------YDYSHEILSCFRVDPFDSRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE  211 (1062)
T ss_pred             ------------------cccCCcceeeeeeCCCCcceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence                              2223345666888874 44455444 4666666654322111      111111110000 0


Q ss_pred             c-----cccc---------cCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE
Q 010390          270 K-----ETRL---------HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI  335 (512)
Q Consensus       270 ~-----~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  335 (512)
                      .     ..+.         .-.-.++|+|.-+.++.......+.++|++-...  +....-......+..+--.|+...|
T Consensus       212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~--l~vvpier~~akfv~vlP~~~rd~L  289 (1062)
T KOG1912|consen  212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECC--LAVVPIERGGAKFVDVLPDPRRDAL  289 (1062)
T ss_pred             hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhce--eEEEEeccCCcceeEeccCCCcceE
Confidence            0     0000         0022356777766666666788899999865322  2222222212223333333445679


Q ss_pred             EEecCCCCEEEEecCCCCCCCce---------------ecc-ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          336 LSGSSDGNAYVWQVNKPQADPIK---------------LKS-HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       336 ~~g~~dg~i~iw~~~~~~~~~~~---------------~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      +++-.||.+.+|-.+........               +.. .+-.+......|..+..++.--.+|.+.+|.+.+|+.-
T Consensus       290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~  369 (1062)
T KOG1912|consen  290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH  369 (1062)
T ss_pred             EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence            99999999999976542111111               000 11123333445654456666667889999999987754


Q ss_pred             c
Q 010390          400 S  400 (512)
Q Consensus       400 ~  400 (512)
                      .
T Consensus       370 ~  370 (1062)
T KOG1912|consen  370 L  370 (1062)
T ss_pred             c
Confidence            3

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.09  E-value=6.3e-10  Score=114.64  Aligned_cols=189  Identities=12%  Similarity=0.195  Sum_probs=145.1

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCWIKEDTNILTASGDQT  131 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~  131 (512)
                      |..|..+.-+|...+-+||+.||.|++|....+.+             +..+. +-...|+.+.|+.+|..+..+..||.
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~-------------v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ-------------VVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCceEEEEeccCCCe-------------EEEeeccCcchhhhhhhcccCCceeeeccCCc
Confidence            33444443388889999999999999999876643             22222 23388999999999999999999999


Q ss_pred             EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEe---CCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS---RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      +.+|.+. .++....+.|......+.|-.   ..+++++   .++.+.+||..-.....                     
T Consensus      2275 l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s--------------------- 2329 (2439)
T KOG1064|consen 2275 LSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNS--------------------- 2329 (2439)
T ss_pred             eeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccc---------------------
Confidence            9999976 667777888999999999875   5677665   46899999975332111                     


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                         .  .-..|.+.++++++.|....+++ |+.+|.|++||++..+......                .    ++ ...+
T Consensus      2330 ---~--v~~~H~~gaT~l~~~P~~qllis-ggr~G~v~l~D~rqrql~h~~~----------------~----~~-~~~~ 2382 (2439)
T KOG1064|consen 2330 ---L--VHTCHDGGATVLAYAPKHQLLIS-GGRKGEVCLFDIRQRQLRHTFQ----------------A----LD-TREY 2382 (2439)
T ss_pred             ---e--eeeecCCCceEEEEcCcceEEEe-cCCcCcEEEeehHHHHHHHHhh----------------h----hh-hhhe
Confidence               1  11689999999999999888887 6699999999999766554321                1    34 5668


Q ss_pred             EEEEecCCeEEEEEcccC
Q 010390          289 LTASCMDHRIYLYNVLQL  306 (512)
Q Consensus       289 l~~~~~dg~i~i~d~~~~  306 (512)
                      +++++..|.|+||++...
T Consensus      2383 f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             eeccCcccceEEEEcccc
Confidence            999999999999998653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.07  E-value=3.8e-08  Score=81.92  Aligned_cols=241  Identities=10%  Similarity=-0.011  Sum_probs=152.8

Q ss_pred             cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeeee
Q 010390           66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKKKCTG  144 (512)
Q Consensus        66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~  144 (512)
                      .+||.|+..|...+|...+.+..            +.....|...|+-+.=.. ....+..++.|.++++.+++.+....
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h------------~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~  152 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGH------------LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF  152 (344)
T ss_pred             cEEEeccccceeeeecccCcccc------------eeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc
Confidence            48999999999999998865432            223334444443322111 22346677889999999887654332


Q ss_pred             cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390          145 ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT  224 (512)
Q Consensus       145 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  224 (512)
                      .+....-.++++++++++ .++++.+....|-.|.+.........                        .........-.
T Consensus       153 ~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~------------------------~~~a~t~D~gF  207 (344)
T KOG4532|consen  153 AVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIEN------------------------IYEAPTSDHGF  207 (344)
T ss_pred             eeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeee------------------------eEecccCCCce
Confidence            222111238899999988 89999999999999998755432111                        01122234456


Q ss_pred             EEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC--EEEEEecCCeEEEEE
Q 010390          225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV--FLTASCMDHRIYLYN  302 (512)
Q Consensus       225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d  302 (512)
                      +..|+.....+++ +..||.+.|||++....+......      ....|.+.+..+.|++.|.  +|+..-.-+.+.+.|
T Consensus       208 ~~S~s~~~~~FAv-~~Qdg~~~I~DVR~~~tpm~~~ss------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D  280 (344)
T KOG4532|consen  208 YNSFSENDLQFAV-VFQDGTCAIYDVRNMATPMAEISS------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD  280 (344)
T ss_pred             eeeeccCcceEEE-EecCCcEEEEEecccccchhhhcc------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence            7788888888777 569999999999987655433221      3455889999999998664  566666678999999


Q ss_pred             cccCCCCceEeeeece----eceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390          303 VLQLDKGPIQHFSGCR----IESFYVKSEICPNASHILSGSSDGNAYVWQVNK  351 (512)
Q Consensus       303 ~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~  351 (512)
                      +++.....+.......    ....+....|+.++.-+.+.+.+. +.-|++.+
T Consensus       281 ~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~s  332 (344)
T KOG4532|consen  281 TRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILS  332 (344)
T ss_pred             cccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeeccc
Confidence            9886544333222211    112244456666666555554432 45555544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.07  E-value=2.4e-08  Score=83.09  Aligned_cols=229  Identities=10%  Similarity=0.077  Sum_probs=142.0

Q ss_pred             CCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCC----CCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          129 DQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPT----NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       129 dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      ...+.+|++-+..  .+...       ..+.|.|.    ...+|+.|+.-|.+.+|...+.+.....+.           
T Consensus        51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd-----------  112 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD-----------  112 (344)
T ss_pred             eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeec-----------
Confidence            3457777765543  22222       23444442    125789999999999999886553322211           


Q ss_pred             ccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                     .+...|+-+.-.-+.. .+.. ++.|.++++.++........           .....-.+.+++
T Consensus       113 ---------------~snn~v~~~~r~cd~~~~~~i-~sndht~k~~~~~~~s~~~~-----------~h~~~~~~ns~~  165 (344)
T KOG4532|consen  113 ---------------VSNNDVTLVKRYCDLKFPLNI-ASNDHTGKTMVVSGDSNKFA-----------VHNQNLTQNSLH  165 (344)
T ss_pred             ---------------ccccchhhhhhhcccccceee-ccCCcceeEEEEecCcccce-----------eeccccceeeeE
Confidence                           1111111111111111 2222 34688888887765443221           111112378899


Q ss_pred             eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce---
Q 010390          282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK---  358 (512)
Q Consensus       282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~---  358 (512)
                      ++++++++++.+....|..|.+........... ....+..-.+..|+.....+|++..||++.|||++....+...   
T Consensus       166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss  244 (344)
T KOG4532|consen  166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS  244 (344)
T ss_pred             EcCCCceEEEecCCCcceEEEeCCccceeeeeE-ecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence            999999999999999999999876544433322 2222333445789999999999999999999999876543322   


Q ss_pred             -eccccCCeEEEEeCCCCCC-eEEEEeCCCcEEEEeCCCCccccccc
Q 010390          359 -LKSHDGEVTAVNWCPNEAG-KIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       359 -~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                       -..|.+.+..+.|++.|.. +|.-.-.=+.+.+-|+.+++-.+...
T Consensus       245 trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  245 TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence             2358899999999987643 33333345789999999987666533

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=1.8e-07  Score=88.78  Aligned_cols=194  Identities=10%  Similarity=0.036  Sum_probs=119.2

Q ss_pred             cEEEEEEecCCCE-EEEEeC---CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCC
Q 010390          110 AIFDLCWIKEDTN-ILTASG---DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCK  183 (512)
Q Consensus       110 ~V~~l~~s~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~  183 (512)
                      .+....|+|||+. ++..+.   +..|.++|+.+++...... ..+......|+|++..++++.+.++  .|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            7788999999985 554333   3569999998886554333 4455667889999966666665554  5666677654


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~  261 (512)
                      ....                            +..+........|+|||+.++.+....+  .|.+.|+.+++.....  
T Consensus       268 ~~~~----------------------------LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--  317 (419)
T PRK04043        268 TLTQ----------------------------ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV--  317 (419)
T ss_pred             cEEE----------------------------cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--
Confidence            3211                            1111112334579999999888764444  5777788766543211  


Q ss_pred             CCccccccccccccCeeEEEeCCCCCEEEEEecC---------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390          262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA  332 (512)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  332 (512)
                              ..+.    ....|+|+|+.|+.....         ..|.+.|+.....   ..+....   ......|+|||
T Consensus       318 --------~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~LT~~~---~~~~p~~SPDG  379 (419)
T PRK04043        318 --------FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI---RRLTANG---VNQFPRFSSDG  379 (419)
T ss_pred             --------cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe---EECCCCC---CcCCeEECCCC
Confidence                    1111    124899999988876643         3678888765432   2222221   11237899999


Q ss_pred             CEEEEecCC-C--CEEEEecCCC
Q 010390          333 SHILSGSSD-G--NAYVWQVNKP  352 (512)
Q Consensus       333 ~~l~~g~~d-g--~i~iw~~~~~  352 (512)
                      +.|+....+ +  .+.+.+++..
T Consensus       380 ~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        380 GSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CEEEEEEccCCcEEEEEEecCCC
Confidence            988665443 3  3556666543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.97  E-value=6.2e-09  Score=86.10  Aligned_cols=149  Identities=14%  Similarity=0.190  Sum_probs=96.2

Q ss_pred             CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-----cCCeEEEEEcccC
Q 010390          232 EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-----MDHRIYLYNVLQL  306 (512)
Q Consensus       232 ~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~  306 (512)
                      +..+++ +..||.+.+++.+.........          ......-.+..+...++.+.++.     .-+..+.|+++..
T Consensus       101 ~t~V~~-~~~dg~~~v~s~~~~~~~~~~i----------~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~  169 (319)
T KOG4714|consen  101 DNRVCI-GYADGSLAVFSTDKDLALMSRI----------PSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI  169 (319)
T ss_pred             CCceEe-cCCCceEEEEechHHHhhhhhc----------ccccccccccceeecccEEecCCcceEeeccceeeeccccc
Confidence            444555 5589999999988732222110          00001111222223444444432     1234555665432


Q ss_pred             CCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390          307 DKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD  385 (512)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  385 (512)
                      ......    ......+.+++-+|.. +.+++|+.||.+-+||.+....+...+..|+.+|+.+.|+|..+..|+++++|
T Consensus       170 ~t~~~~----~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed  245 (319)
T KOG4714|consen  170 KTLIPS----KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED  245 (319)
T ss_pred             cccccc----ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence            211111    1111226667778864 55688999999999999998877788999999999999999999999999999


Q ss_pred             CcEEEEeCCC
Q 010390          386 YTVRLWSLEN  395 (512)
Q Consensus       386 g~i~vwd~~~  395 (512)
                      |.+--||-.+
T Consensus       246 Gslw~wdas~  255 (319)
T KOG4714|consen  246 GSLWHWDAST  255 (319)
T ss_pred             CcEEEEcCCC
Confidence            9999999875

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.97  E-value=4.8e-07  Score=86.03  Aligned_cols=267  Identities=10%  Similarity=0.058  Sum_probs=149.4

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      ++..+++++.+|.+..+|.++++..-             ... -.+.+.+.-.. .+..++.++.+|.|..||.++|+.+
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W-------------~~~-~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~  168 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELW-------------RAK-LSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERL  168 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEee-------------eec-cCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCcee
Confidence            46678888889999999988775311             111 11222211111 3456777788999999999999887


Q ss_pred             ecccCcCCCEE-----EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccc
Q 010390          144 GALMGHTGSIK-----SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA  218 (512)
Q Consensus       144 ~~~~~h~~~v~-----~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (512)
                      ..+......+.     +....  + ..++.+..+|.+..+|.++++.........       ..+.      ........
T Consensus       169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~-------~~g~------~~~~~~~~  232 (377)
T TIGR03300       169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVAL-------PKGR------TELERLVD  232 (377)
T ss_pred             eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecccc-------CCCC------Cchhhhhc
Confidence            76653322111     11122  2 467778888999999998876543211000       0000      00000000


Q ss_pred             ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeE
Q 010390          219 ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRI  298 (512)
Q Consensus       219 ~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  298 (512)
                      .   .....+  .+..+++ ++.+|.+..||..+++.......             .......  ..+..+++++.+|.+
T Consensus       233 ~---~~~p~~--~~~~vy~-~~~~g~l~a~d~~tG~~~W~~~~-------------~~~~~p~--~~~~~vyv~~~~G~l  291 (377)
T TIGR03300       233 V---DGDPVV--DGGQVYA-VSYQGRVAALDLRSGRVLWKRDA-------------SSYQGPA--VDDNRLYVTDADGVV  291 (377)
T ss_pred             c---CCccEE--ECCEEEE-EEcCCEEEEEECCCCcEEEeecc-------------CCccCce--EeCCEEEEECCCCeE
Confidence            0   000111  2344554 44689999999998876654321             0111122  245678888899999


Q ss_pred             EEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeE-EEEeCCCCCC
Q 010390          299 YLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVT-AVNWCPNEAG  377 (512)
Q Consensus       299 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~  377 (512)
                      ..+|..+++.  +-...... .........  .+..|++++.+|.|+++|..+++.. ..+..+...+. +..+. +  .
T Consensus       292 ~~~d~~tG~~--~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~-~~~~~~~~~~~~sp~~~-~--~  362 (377)
T TIGR03300       292 VALDRRSGSE--LWKNDELK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV-ARLKTDGSGIASPPVVV-G--D  362 (377)
T ss_pred             EEEECCCCcE--EEcccccc-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE-EEEEcCCCccccCCEEE-C--C
Confidence            9999865432  11111100 000111111  3678889999999999999888763 44544443332 22232 3  3


Q ss_pred             eEEEEeCCCcEEEE
Q 010390          378 KIVTSSDDYTVRLW  391 (512)
Q Consensus       378 ~l~s~~~dg~i~vw  391 (512)
                      .|+.++.||.|+.+
T Consensus       363 ~l~v~~~dG~l~~~  376 (377)
T TIGR03300       363 GLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEEeCCceEEEe
Confidence            68889999998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=2.5e-09  Score=97.60  Aligned_cols=227  Identities=13%  Similarity=0.186  Sum_probs=152.9

Q ss_pred             eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390          143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS  222 (512)
Q Consensus       143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (512)
                      ++.+.+|...|..++-..+. +-+++++.|.+|++|.++.......                    ..........|..+
T Consensus       728 L~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~--------------------tsaCQfTY~aHkk~  786 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIG--------------------TSACQFTYQAHKKP  786 (1034)
T ss_pred             eecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccc--------------------cceeeeEhhhccCc
Confidence            56678899988887655444 8899999999999999975432111                    12234467789999


Q ss_pred             EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEE
Q 010390          223 ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLY  301 (512)
Q Consensus       223 v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~  301 (512)
                      |.++.|..+.+.+++   .||.|.+||.--++.........      ..+..+.|.++.-- +...++.+ +...+|+++
T Consensus       787 i~~igfL~~lr~i~S---cD~giHlWDPFigr~Laq~~dap------k~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~  856 (1034)
T KOG4190|consen  787 IHDIGFLADLRSIAS---CDGGIHLWDPFIGRLLAQMEDAP------KEGAGGNIKCLENV-DRHILIAGCSAESTVKLF  856 (1034)
T ss_pred             ccceeeeeccceeee---ccCcceeecccccchhHhhhcCc------ccCCCceeEecccC-cchheeeeccchhhheee
Confidence            999999999888876   38999999987666554332111      11222233333221 33344444 678899999


Q ss_pred             EcccCCCCceEeee-eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEE
Q 010390          302 NVLQLDKGPIQHFS-GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIV  380 (512)
Q Consensus       302 d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~  380 (512)
                      |.+..+...-.... ....+..+.+++..+.|++++++-.+|.|.+.|.++++. +...+..+-....++- |.+ +.|+
T Consensus       857 DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v-INswrpmecdllqlaa-psd-q~L~  933 (1034)
T KOG4190|consen  857 DARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV-INSWRPMECDLLQLAA-PSD-QALA  933 (1034)
T ss_pred             ecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce-eccCCcccchhhhhcC-chh-HHHH
Confidence            98765443322222 222335677899999999999999999999999998875 2334433434444433 444 6888


Q ss_pred             EEeCCCcEEE-EeCCCCccccccc
Q 010390          381 TSSDDYTVRL-WSLENSRCSSMRS  403 (512)
Q Consensus       381 s~~~dg~i~v-wd~~~~~~~~~~~  403 (512)
                      ....|.++.+ |...+|.......
T Consensus       934 ~saldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  934 QSALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             hhcccceeEeeehhcCCeeeeccC
Confidence            8888999999 9888877655433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.9e-08  Score=89.80  Aligned_cols=264  Identities=12%  Similarity=0.113  Sum_probs=174.8

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      |.+.|+.|..   + -.+++.+++.||.++.|.-..-.          ....+..+..|...|.+++.+-++..+.|.+.
T Consensus         8 hrd~i~hv~~---t-ka~fiiqASlDGh~KFWkKs~is----------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d   73 (558)
T KOG0882|consen    8 HRDVITHVFP---T-KAKFIIQASLDGHKKFWKKSRIS----------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVED   73 (558)
T ss_pred             ccceeeeEee---e-hhheEEeeecchhhhhcCCCCcc----------ceeehhhhHHHHHHHHhhhccccceeEeeccC
Confidence            7777777765   2 35799999999999999754311          12336677889999999999999999999777


Q ss_pred             -CCcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCC--CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          129 -DQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNS--DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       129 -dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                       |..++++|+++-..+.-++  ...+.+..+ .++.+.  .+-++.-.++.+.++|-....+....              
T Consensus        74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~--------------  138 (558)
T KOG0882|consen   74 PDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY--------------  138 (558)
T ss_pred             cccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccce--------------
Confidence             9999999998765443222  222333222 222211  22333345789999997755432211              


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-c---cceecccCCCccccccccccccCeeE
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-L---KAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                 ....|..+|.++.+++.+..+++ ....|.|..|.... .   +........+...............+
T Consensus       139 -----------fkklH~sPV~~i~y~qa~Ds~vS-iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts  206 (558)
T KOG0882|consen  139 -----------FKKLHFSPVKKIRYNQAGDSAVS-IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS  206 (558)
T ss_pred             -----------ecccccCceEEEEeeccccceee-ccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence                       33467789999999999988876 44689999998873 1   11111222222222234455667899


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceE---------------eeeec--------------eeceeEEEEEECC
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQ---------------HFSGC--------------RIESFYVKSEICP  330 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------------~~~~~--------------~~~~~~~~~~~s~  330 (512)
                      +.|+|++..+.+-+.|..|++++..++......               .+...              ......+.+.|..
T Consensus       207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde  286 (558)
T KOG0882|consen  207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE  286 (558)
T ss_pred             eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence            999999999999999999999997654321100               00000              0111234578999


Q ss_pred             CCCEEEEecCCCCEEEEecCCCCC
Q 010390          331 NASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      .+++|+-|+-=| |++.++.+...
T Consensus       287 s~~flly~t~~g-ikvin~~tn~v  309 (558)
T KOG0882|consen  287 SGNFLLYGTILG-IKVINLDTNTV  309 (558)
T ss_pred             CCCEEEeeccee-EEEEEeecCeE
Confidence            999999998777 88888877543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.93  E-value=3.6e-07  Score=82.39  Aligned_cols=120  Identities=13%  Similarity=0.178  Sum_probs=96.6

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCC-cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDG-YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA  126 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~  126 (512)
                      ||.+.   |.+..+..+++-++.|..|| .+-|+|.++++              +..+...-+.|.++..+++|++++.+
T Consensus       357 ~~~~~---VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--------------~kr~e~~lg~I~av~vs~dGK~~vva  419 (668)
T COG4946         357 GKKGG---VRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--------------VKRIEKDLGNIEAVKVSPDGKKVVVA  419 (668)
T ss_pred             CCCCc---eEEEEEccCCcceEEeccCCceEEEEecCCce--------------EEEeeCCccceEEEEEcCCCcEEEEE
Confidence            45555   45555588888899999999 89999998764              45556677899999999999999999


Q ss_pred             eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC----cEEEEeCCCCCC
Q 010390          127 SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG----SFAIWDLRCKSS  185 (512)
Q Consensus       127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~  185 (512)
                      .....|.+.|++++.....=+...+-|+.+.|+|++ .++|-+--+|    .|+++|+.+++.
T Consensus       420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             cCceEEEEEEecCCCeeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeE
Confidence            988999999999998765555566789999999987 7888766554    689999987653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=3.1e-07  Score=87.25  Aligned_cols=191  Identities=10%  Similarity=0.010  Sum_probs=113.8

Q ss_pred             CcceEEEEEecCCCcE-EEEeeC---CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE-E
Q 010390           52 PPLAVSFCKTSKNSHI-FAVSDE---DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT-A  126 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~-latg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~  126 (512)
                      ....-.|   ||||+. ++..+.   +..|.++|+.+++.           ..+.   ...+......|+|||+.|+. .
T Consensus       189 ~~~~p~w---SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------~~lt---~~~g~~~~~~~SPDG~~la~~~  251 (419)
T PRK04043        189 LNIFPKW---ANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----------EKIA---SSQGMLVVSDVSKDGSKLLLTM  251 (419)
T ss_pred             CeEeEEE---CCCCCcEEEEEEccCCCCEEEEEECCCCcE-----------EEEe---cCCCcEEeeEECCCCCEEEEEE
Confidence            3444555   999984 665433   35688889877642           2222   24455667889999988774 3


Q ss_pred             eC--CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          127 SG--DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       127 ~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      +.  +..|.++|+.+++... +..+........|+|++..++++....+  .|.+.|+.+++.....             
T Consensus       252 ~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-------------  317 (419)
T PRK04043        252 APKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-------------  317 (419)
T ss_pred             ccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-------------
Confidence            33  3568888987776433 4333333345679999955555554444  4666677654431110             


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecC--------CeEEEEeccCccceecccCCCccccccccccc
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--------SIVKFWDTRNLKAQITQAWPHAESSSAKETRL  274 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  274 (512)
                                   ..+.    ....|+|+|+.++.+...+        ..|.+.|+.++.....            ... 
T Consensus       318 -------------~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L------------T~~-  367 (419)
T PRK04043        318 -------------FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL------------TAN-  367 (419)
T ss_pred             -------------cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC------------CCC-
Confidence                         0010    1238999999998876443        3678888877653321            111 


Q ss_pred             cCeeEEEeCCCCCEEEEEecC-C--eEEEEEc
Q 010390          275 HGISSLSQDSNGVFLTASCMD-H--RIYLYNV  303 (512)
Q Consensus       275 ~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~  303 (512)
                      .......|+|||+.++....+ +  .+.+.++
T Consensus       368 ~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        368 GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence            123358899999988766543 2  3455555

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=7e-09  Score=89.32  Aligned_cols=155  Identities=12%  Similarity=0.174  Sum_probs=110.1

Q ss_pred             EEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee
Q 010390          236 ATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS  315 (512)
Q Consensus       236 ~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  315 (512)
                      +++| .+..|-+-|+.++....             ......|.++.|...+.++..|+.+|.|..+|++...........
T Consensus       228 fs~G-~sqqv~L~nvetg~~qs-------------f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~  293 (425)
T KOG2695|consen  228 FSVG-LSQQVLLTNVETGHQQS-------------FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ  293 (425)
T ss_pred             eccc-ccceeEEEEeecccccc-------------cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence            4445 57788888888875432             224567999999999999999999999999999876433222222


Q ss_pred             eceeceeEEEEEECC-CCCEEEEecCCCCEEEEecCCCCC--CCceeccccCCeEEE--EeCCCCCCeEEEEeCCCcEEE
Q 010390          316 GCRIESFYVKSEICP-NASHILSGSSDGNAYVWQVNKPQA--DPIKLKSHDGEVTAV--NWCPNEAGKIVTSSDDYTVRL  390 (512)
Q Consensus       316 ~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~v--~~~~~~~~~l~s~~~dg~i~v  390 (512)
                      ..-+.+.++++..-. ++++|++.+.+|.|.+||++-.++  .+..+.+|-..-.-+  ...+.. ..++++|+|...||
T Consensus       294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRi  372 (425)
T KOG2695|consen  294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRI  372 (425)
T ss_pred             EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEE
Confidence            222233455555544 678999999999999999986554  245677774432222  234445 68999999999999


Q ss_pred             EeCCCCcccccccCc
Q 010390          391 WSLENSRCSSMRSPS  405 (512)
Q Consensus       391 wd~~~~~~~~~~~~~  405 (512)
                      |.+..|.++.+....
T Consensus       373 Wsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  373 WSLDSGHLLCTIPFP  387 (425)
T ss_pred             EecccCceeeccCCC
Confidence            999999988875543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=3.6e-08  Score=88.06  Aligned_cols=259  Identities=12%  Similarity=0.053  Sum_probs=177.7

Q ss_pred             cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC--C-eeeecccCcCCCEEEEEeeCCCCCeEEEEeC-CCcEEEEeCC
Q 010390          106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK--K-KCTGALMGHTGSIKSLCSHPTNSDILVSGSR-DGSFAIWDLR  181 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~  181 (512)
                      -|...|+.+.-. -.+++.+++.||.++.|.-..  + +.+..+..|...|.+++.+-++ .++.+.+. |..++++|++
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence            377777776654 567899999999999997543  2 4455667888899999998887 88899787 9999999998


Q ss_pred             CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee-cC---CEEEEEeecCCeEEEEeccCcccee
Q 010390          182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DE---VSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                      +-..........                            ....+.|.. .|   ..++++...++.+.++|-....+..
T Consensus        85 n~DminmiKL~~----------------------------lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~  136 (558)
T KOG0882|consen   85 NFDMINMIKLVD----------------------------LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD  136 (558)
T ss_pred             ccchhhhccccc----------------------------CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc
Confidence            765443221111                            111122211 11   1345555578899999987665433


Q ss_pred             cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc----eEe-------eeeceeceeEEEE
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP----IQH-------FSGCRIESFYVKS  326 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~-------~~~~~~~~~~~~~  326 (512)
                      ..         ....|..+|..+.+.+.+..+++....|.|..|.....-+.+    ...       +..........++
T Consensus       137 ~~---------fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~  207 (558)
T KOG0882|consen  137 GY---------FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF  207 (558)
T ss_pred             ce---------ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccce
Confidence            22         456778899999999999999999999999999976311111    001       1111223446679


Q ss_pred             EECCCCCEEEEecCCCCEEEEecCCCCCCCc-------------------------------eeccccC-CeEEEEeCCC
Q 010390          327 EICPNASHILSGSSDGNAYVWQVNKPQADPI-------------------------------KLKSHDG-EVTAVNWCPN  374 (512)
Q Consensus       327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~-------------------------------~~~~h~~-~v~~v~~~~~  374 (512)
                      .|+|++..+.+-+.|..|+++++.+++....                               .+..|.. .-+.+.|...
T Consensus       208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes  287 (558)
T KOG0882|consen  208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES  287 (558)
T ss_pred             EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC
Confidence            9999999999999999999999987643110                               0111222 2345668777


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCcccccccCc
Q 010390          375 EAGKIVTSSDDYTVRLWSLENSRCSSMRSPS  405 (512)
Q Consensus       375 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  405 (512)
                      + ++|+-++-=| |+|.++.++++.+.+-..
T Consensus       288 ~-~flly~t~~g-ikvin~~tn~v~ri~gk~  316 (558)
T KOG0882|consen  288 G-NFLLYGTILG-IKVINLDTNTVVRILGKD  316 (558)
T ss_pred             C-CEEEeeccee-EEEEEeecCeEEEEeccc
Confidence            7 7888887766 999999999988875433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.90  E-value=3.1e-08  Score=87.28  Aligned_cols=158  Identities=16%  Similarity=0.261  Sum_probs=107.5

Q ss_pred             ecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE---EEeCCCcEEEEeC
Q 010390           61 TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL---TASGDQTIKIWDA  137 (512)
Q Consensus        61 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~---s~~~dg~i~iwd~  137 (512)
                      .++++++||++..+....++++......         .+.+... .-...-+++.|..+.....   .++....+.+|+.
T Consensus        70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~---------~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   70 TSDSGRLVAVATSSKQRAVFDYRENPKG---------AKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cCCCceEEEEEeCCCceEEEEEecCCCc---------ceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            3899999999988888778877654220         0111111 1122333444444444443   3445566777776


Q ss_pred             CCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc
Q 010390          138 EKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK  217 (512)
Q Consensus       138 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (512)
                      ..+. ...+.+|-..++.++|+|++ .+++++..|..|++-..........+                          ..
T Consensus       140 ~~~~-~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Iesf--------------------------cl  191 (390)
T KOG3914|consen  140 DSGR-CEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESF--------------------------CL  191 (390)
T ss_pred             cccC-cchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhh--------------------------cc
Confidence            6643 44566899999999999998 99999999999999877654433322                          33


Q ss_pred             cccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       218 ~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      +|...|..++.-++.. |++ |+-|++|++||+.+++.+.+
T Consensus       192 GH~eFVS~isl~~~~~-LlS-~sGD~tlr~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  192 GHKEFVSTISLTDNYL-LLS-GSGDKTLRLWDITSGKLLDT  230 (390)
T ss_pred             ccHhheeeeeeccCce-eee-cCCCCcEEEEecccCCcccc
Confidence            7888899999876654 555 44699999999999987754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.90  E-value=8.6e-09  Score=97.46  Aligned_cols=226  Identities=18%  Similarity=0.237  Sum_probs=151.4

Q ss_pred             eeeeeeEeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE
Q 010390           37 TEIGAVTVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC  115 (512)
Q Consensus        37 ~~~~~~~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  115 (512)
                      .....+-+.++||...|+.+.|   +|.. ..||+++.|-.|..||+....            .++..+..-......++
T Consensus       101 ss~~aIef~lhghsraitd~n~---~~q~pdVlatcsvdt~vh~wd~rSp~------------~p~ys~~~w~s~asqVk  165 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINF---NPQHPDVLATCSVDTYVHAWDMRSPH------------RPFYSTSSWRSAASQVK  165 (1081)
T ss_pred             CCccceEEEEecCccceecccc---CCCCCcceeeccccccceeeeccCCC------------cceeeeecccccCceee
Confidence            3445677889999999999999   4433 589999999999999997653            33444555556778899


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          116 WIKEDTNILTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       116 ~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      |+-....+++.+..+.|++||...| .++..+++|...|+.+.|.......+.+++.||+|+.||.........      
T Consensus       166 wnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~------  239 (1081)
T KOG0309|consen  166 WNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK------  239 (1081)
T ss_pred             ecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc------
Confidence            9885555655667778999999876 567888999999999999876556899999999999999875433221      


Q ss_pred             eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec-CCeEEEEeccCccceecccCCCcccccccccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-NSIVKFWDTRNLKAQITQAWPHAESSSAKETR  273 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  273 (512)
                                          ....-..++..-.+.|-|...++--.. +..+.+++.++....... .....+...+.+|
T Consensus       240 --------------------~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~-~~~~~pVh~F~GH  298 (1081)
T KOG0309|consen  240 --------------------RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV-FDLNTPVHTFVGH  298 (1081)
T ss_pred             --------------------eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcc-ccCCcceeeecCc
Confidence                                111223456666666655543321111 224444544433222111 1111222256777


Q ss_pred             ccCeeEEEeCCC----------CCEEEEEecCCeEEEEEcc
Q 010390          274 LHGISSLSQDSN----------GVFLTASCMDHRIYLYNVL  304 (512)
Q Consensus       274 ~~~i~~~~~~~~----------~~~l~~~~~dg~i~i~d~~  304 (512)
                      ...|....|-..          .-.|++=+.|..+++|-+.
T Consensus       299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence            777766655332          2379999999999999863

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.85  E-value=3.6e-06  Score=71.54  Aligned_cols=233  Identities=13%  Similarity=0.142  Sum_probs=133.5

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCCCC--eeeec---ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390          114 LCWIKEDTNILTASGDQTIKIWDAEKK--KCTGA---LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       114 l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~---~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  188 (512)
                      ++.+.+|+.||.- .|..|.|-..++.  .++..   -+.....-..++|+|++ .+||.+...|+|+++|+........
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccceeEEc
Confidence            4556788877755 6777888766543  12222   22223345779999998 8999999999999999986443211


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEEeecC------CEEEEEeecCCeEEEEeccCcc-----cee
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE------VSIATASAVNSIVKFWDTRNLK-----AQI  257 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~g~~dg~i~iwd~~~~~-----~~~  257 (512)
                      .....                     ........|..+.|.+..      ..+++.. .+|.++-|-+..+.     ...
T Consensus        81 ~p~~~---------------------~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-Y~G~L~Sy~vs~gt~q~y~e~h  138 (282)
T PF15492_consen   81 PPAMS---------------------FPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-YRGQLRSYLVSVGTNQGYQENH  138 (282)
T ss_pred             Ccccc---------------------cCCccccceeeeEeeccccccccceeEEEEe-ccceeeeEEEEcccCCcceeeE
Confidence            11000                     000123456666665432      2344434 57777777653321     111


Q ss_pred             cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCe-----------EEEEEcccCCCCceEeeeeceeceeEEEE
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR-----------IYLYNVLQLDKGPIQHFSGCRIESFYVKS  326 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  326 (512)
                      .+.        .......+|.++.++|..++|++|+....           +..|.+-                      
T Consensus       139 sfs--------f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL----------------------  188 (282)
T PF15492_consen  139 SFS--------FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRIL----------------------  188 (282)
T ss_pred             EEE--------ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEc----------------------
Confidence            110        11223568999999999998888874422           1112111                      


Q ss_pred             EECCCCCEEEEecCCCC------EEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          327 EICPNASHILSGSSDGN------AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       327 ~~s~~~~~l~~g~~dg~------i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      .-+|..+.+ +...|+.      -.+|.+-+.+.. .........|..+..+||| ..||+...+|.|.+|++.+-++..
T Consensus       189 ~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~f-s~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~~~  265 (282)
T PF15492_consen  189 SDSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFF-SRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRLQR  265 (282)
T ss_pred             CCCCcEEEc-cccCccccccccccceeeccceeee-eccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchhhc
Confidence            111222221 1222221      123333221110 1112245689999999999 899999999999999999887776


Q ss_pred             ccc
Q 010390          401 MRS  403 (512)
Q Consensus       401 ~~~  403 (512)
                      ...
T Consensus       266 ~W~  268 (282)
T PF15492_consen  266 SWK  268 (282)
T ss_pred             ccc
Confidence            544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.84  E-value=1.1e-07  Score=92.51  Aligned_cols=194  Identities=14%  Similarity=0.199  Sum_probs=136.2

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      ++..+..|+-...+..+|+++...             .+...-..+.|+-|+.  +++++.+|...|+|.+-|.++.+.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e-------------~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~i  210 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKE-------------TRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETI  210 (1118)
T ss_pred             CCcceeecchhhheeeeeccccee-------------eeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCcee
Confidence            345566666666777777765432             2222222334666654  6788888888999999999888889


Q ss_pred             ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390          144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI  223 (512)
Q Consensus       144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (512)
                      +++..|.+.|..+...  | ++|+++|..+  +.+.+                                           
T Consensus       211 ht~~aHs~siSDfDv~--G-NlLitCG~S~--R~~~l-------------------------------------------  242 (1118)
T KOG1275|consen  211 HTFDAHSGSISDFDVQ--G-NLLITCGYSM--RRYNL-------------------------------------------  242 (1118)
T ss_pred             eeeeccccceeeeecc--C-CeEEEeeccc--ccccc-------------------------------------------
Confidence            9999999888876654  5 7888888643  22111                                           


Q ss_pred             EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEE
Q 010390          224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYN  302 (512)
Q Consensus       224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d  302 (512)
                                  +    .|.-|++||++..+.+.-...+.            ...-+.|+|. ...+++++..|...+-|
T Consensus       243 ------------~----~D~FvkVYDLRmmral~PI~~~~------------~P~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  243 ------------A----MDPFVKVYDLRMMRALSPIQFPY------------GPQFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             ------------c----ccchhhhhhhhhhhccCCccccc------------CchhhhhcccccceEEEEecccceeecc
Confidence                        1    37889999999877654322111            1234566664 35788888999999999


Q ss_pred             cccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          303 VLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                      .......+.....-+.....+..+++|++++.++.|..+|.|.+|.
T Consensus       295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            6555555555666666667788999999999999999999999997

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.82  E-value=8.2e-06  Score=72.41  Aligned_cols=228  Identities=11%  Similarity=0.016  Sum_probs=136.8

Q ss_pred             EEEEec-CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          113 DLCWIK-EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       113 ~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      ++.|.+ ++.++++--..+.|..|+..+++... +...  ....+++...+ ..|+.+..+ .+.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeec
Confidence            578888 66666676678999999998876543 2212  27778888334 445555554 456668776532111000


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-------CeEEEEeccCccceecccCCCc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-------SIVKFWDTRNLKAQITQAWPHA  264 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-------g~i~iwd~~~~~~~~~~~~~~~  264 (512)
                                            ..........+.+++.++|...++.....       |.|..++.. ++...       
T Consensus        79 ----------------------~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-------  128 (246)
T PF08450_consen   79 ----------------------PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-------  128 (246)
T ss_dssp             ----------------------ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-------
T ss_pred             ----------------------cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-------
Confidence                                  00001345788999999999666533211       557777777 33221       


Q ss_pred             cccccccccccCeeEEEeCCCCCEEE-EEecCCeEEEEEcccCCCCc--eEeeee-ceeceeEEEEEECCCCCEEEEecC
Q 010390          265 ESSSAKETRLHGISSLSQDSNGVFLT-ASCMDHRIYLYNVLQLDKGP--IQHFSG-CRIESFYVKSEICPNASHILSGSS  340 (512)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~--~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~  340 (512)
                           ........+.++|+|+++.|+ +-+..+.|..|++.......  ...+.. .......-.+++..+|++.++...
T Consensus       129 -----~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~  203 (246)
T PF08450_consen  129 -----VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG  203 (246)
T ss_dssp             -----EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET
T ss_pred             -----EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC
Confidence                 222345578999999999776 45577899999986433211  122211 111123566899999998888777


Q ss_pred             CCCEEEEecCCCCCCCceeccccCCeEEEEeC-CCCCCeEEEE
Q 010390          341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC-PNEAGKIVTS  382 (512)
Q Consensus       341 dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~l~s~  382 (512)
                      .+.|.+++.+ ++. ...+.-....+++++|. ++...+++|.
T Consensus       204 ~~~I~~~~p~-G~~-~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  204 GGRIVVFDPD-GKL-LREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             TTEEEEEETT-SCE-EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCEEEEECCC-ccE-EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            8899999987 443 23333334589999994 5553455554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.82  E-value=9.2e-06  Score=72.12  Aligned_cols=223  Identities=12%  Similarity=0.063  Sum_probs=135.9

Q ss_pred             eEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe-cCCCEEEEEeCCCcE
Q 010390           55 AVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI-KEDTNILTASGDQTI  132 (512)
Q Consensus        55 ~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~s~~~dg~i  132 (512)
                      ++.|   .+ ++.++++--..+.|..|+..++..              ..+..  .....+++. +++ .|+.+..++ +
T Consensus         4 gp~~---d~~~g~l~~~D~~~~~i~~~~~~~~~~--------------~~~~~--~~~~G~~~~~~~g-~l~v~~~~~-~   62 (246)
T PF08450_consen    4 GPVW---DPRDGRLYWVDIPGGRIYRVDPDTGEV--------------EVIDL--PGPNGMAFDRPDG-RLYVADSGG-I   62 (246)
T ss_dssp             EEEE---ETTTTEEEEEETTTTEEEEEETTTTEE--------------EEEES--SSEEEEEEECTTS-EEEEEETTC-E
T ss_pred             ceEE---ECCCCEEEEEEcCCCEEEEEECCCCeE--------------EEEec--CCCceEEEEccCC-EEEEEEcCc-e
Confidence            4556   66 778888888899999999876532              11111  127788888 564 555555555 5


Q ss_pred             EEEeCCCCeeeecccC-----cCCCEEEEEeeCCCCCeEEEEeCC--------CcEEEEeCCCCCCCCCccccceeeecc
Q 010390          133 KIWDAEKKKCTGALMG-----HTGSIKSLCSHPTNSDILVSGSRD--------GSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      .++|+.+++.......     .....+.+++.++| ++.++....        |.|..++.. ++.              
T Consensus        63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--------------  126 (246)
T PF08450_consen   63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKV--------------  126 (246)
T ss_dssp             EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE--------------
T ss_pred             EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeE--------------
Confidence            6669988865433322     33568899999988 666666543        345555554 211              


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                    ......-...+.++|+|+++.++++-+..+.|..+++..............    ...........
T Consensus       127 --------------~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~g~pDG  188 (246)
T PF08450_consen  127 --------------TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI----DFPGGPGYPDG  188 (246)
T ss_dssp             --------------EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE----E-SSSSCEEEE
T ss_pred             --------------EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE----EcCCCCcCCCc
Confidence                          011122345789999999999988787889999999874433111000000    11111134778


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE-CCCCCEEEE
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI-CPNASHILS  337 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~  337 (512)
                      ++++.+|++.++....+.|.++|..   ...+..+...  ...+++++| .++.+.|+.
T Consensus       189 ~~vD~~G~l~va~~~~~~I~~~~p~---G~~~~~i~~p--~~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  189 LAVDSDGNLWVADWGGGRIVVFDPD---GKLLREIELP--VPRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             EEEBTTS-EEEEEETTTEEEEEETT---SCEEEEEE-S--SSSEEEEEEESTTSSEEEE
T ss_pred             ceEcCCCCEEEEEcCCCEEEEECCC---ccEEEEEcCC--CCCEEEEEEECCCCCEEEE
Confidence            9999999988888789999999974   2233333322  124677888 466555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.78  E-value=2.2e-08  Score=59.81  Aligned_cols=37  Identities=24%  Similarity=0.620  Sum_probs=35.1

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWD  136 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd  136 (512)
                      ++..+.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4778899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=5e-06  Score=73.71  Aligned_cols=85  Identities=21%  Similarity=0.253  Sum_probs=74.8

Q ss_pred             eeccccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          101 ISDWVAHQNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      ..-+.+|...|.+++|+|..+ +|..++.+..|+|.|+++..++..+..+ ..+++++|.-++.+++++|-.+|.|.+||
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            445567888999999999776 6778999999999999999999888877 78999999999889999999999999999


Q ss_pred             CCCCCCC
Q 010390          180 LRCKSSP  186 (512)
Q Consensus       180 ~~~~~~~  186 (512)
                      ++..+..
T Consensus       265 ~R~~~~~  271 (463)
T KOG1645|consen  265 MRQPEGP  271 (463)
T ss_pred             ccCCCch
Confidence            9976643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.72  E-value=2.2e-05  Score=79.56  Aligned_cols=268  Identities=12%  Similarity=0.092  Sum_probs=155.2

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC----CCC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL----RCK  183 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~----~~~  183 (512)
                      ...|.++.|..+...|+.+..+|.|.+-|.++.... ....-...|.+++|+|+. ..++..+.++++.+-+-    -..
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhc
Confidence            368999999999999999999999999998776432 222244689999999998 78888887777766432    111


Q ss_pred             CCCCCc-cccceeeeccccc--------ccccccccccce-----ecccccccEEEEEEeecCCEEEEEe---ecC-CeE
Q 010390          184 SSPKSN-CAESFVFSSAVVK--------GAHLLSQSKRVS-----RRKAASMSITSVLYLKDEVSIATAS---AVN-SIV  245 (512)
Q Consensus       184 ~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~g---~~d-g~i  245 (512)
                      +....- ..........+.+        .+...+ .....     ........=++|.|--||.++++++   ..+ ..|
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~-~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAA-RQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcc-cccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence            111000 0000000000000        000000 00000     0001223345699999999988743   124 789


Q ss_pred             EEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe---cCCeEEEEEcccCCCCceEeeeeceecee
Q 010390          246 KFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC---MDHRIYLYNVLQLDKGPIQHFSGCRIESF  322 (512)
Q Consensus       246 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  322 (512)
                      ++||.+ +.....           .....+--.+++|-|.|..+++-.   .|+.|.+|.-+....... .+........
T Consensus       225 rV~drE-g~Lns~-----------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f-~l~~p~de~~  291 (1265)
T KOG1920|consen  225 RVYDRE-GALNST-----------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF-VLPFPLDEKE  291 (1265)
T ss_pred             EEeccc-chhhcc-----------cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc-ccCCcccccc
Confidence            999987 332211           111223356799999999888754   556899998654333211 1111111222


Q ss_pred             EEEEEECCCCCEEEE---ecCCCCEEEEecCCCCCCCc-eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          323 YVKSEICPNASHILS---GSSDGNAYVWQVNKPQADPI-KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       323 ~~~~~~s~~~~~l~~---g~~dg~i~iw~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      +..++|+.++..|++   ......|++|-+.+..-.+. .+.-.....  +.|+|..+..|..-..+|...++++
T Consensus       292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             hheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence            677999999999987   44445599998876543211 111111122  7788766555655556666655554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.72  E-value=3.4e-08  Score=58.94  Aligned_cols=39  Identities=18%  Similarity=0.431  Sum_probs=36.3

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEE
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFD   81 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd   81 (512)
                      +.++..+.+|.++|.+|+|   +|++++||+|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~---~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAW---SPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEE---ETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEE---ecccccceeeCCCCEEEEEC
Confidence            4567889999999999999   99999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.68  E-value=1.1e-05  Score=77.10  Aligned_cols=288  Identities=9%  Similarity=-0.000  Sum_probs=153.2

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC-CCcEE-EEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-QNAIF-DLCWIKEDTNILTASGDQTIKIWDAEKKK  141 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~-~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  141 (512)
                      .+..+++++.+|.|.-+|.++++..-......    ....+... ...+. .+..  ++..++.++.+|.+..+|.++|+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~  141 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSE----KDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGE  141 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCC----cccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCC
Confidence            35567777788889999988775421100000    00000000 00110 1111  35667778889999999999999


Q ss_pred             eeecccCcCCCEEE-EEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccc
Q 010390          142 CTGALMGHTGSIKS-LCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAAS  220 (512)
Q Consensus       142 ~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (512)
                      .+....... .+.+ ....  + ..++.+..++.|..+|..+++..-........                  .......
T Consensus       142 ~~W~~~~~~-~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~------------------~~~~~~~  199 (394)
T PRK11138        142 VAWQTKVAG-EALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPS------------------LTLRGES  199 (394)
T ss_pred             CcccccCCC-ceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCc------------------ccccCCC
Confidence            887775433 2222 1222  3 46667778899999999988765433211000                  0000001


Q ss_pred             ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC--CCCEEEEEecCCeE
Q 010390          221 MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS--NGVFLTASCMDHRI  298 (512)
Q Consensus       221 ~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i  298 (512)
                      .++.    . ++ .+++ +..+|.+..+|..+++................    .....+..+|  .+..++.++.+|.+
T Consensus       200 sP~v----~-~~-~v~~-~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~----~~~~~~~~sP~v~~~~vy~~~~~g~l  268 (394)
T PRK11138        200 APAT----A-FG-GAIV-GGDNGRVSAVLMEQGQLIWQQRISQPTGATEI----DRLVDVDTTPVVVGGVVYALAYNGNL  268 (394)
T ss_pred             CCEE----E-CC-EEEE-EcCCCEEEEEEccCChhhheeccccCCCccch----hcccccCCCcEEECCEEEEEEcCCeE
Confidence            1111    1 22 3443 44688999999988877654322111000000    0000111112  24467777789999


Q ss_pred             EEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCe
Q 010390          299 YLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGK  378 (512)
Q Consensus       299 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~  378 (512)
                      ..+|..+++..-...+.     . ...+.  ..+..|+.++.+|.+..+|..+++........-.....+....  + .+
T Consensus       269 ~ald~~tG~~~W~~~~~-----~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~  337 (394)
T PRK11138        269 VALDLRSGQIVWKREYG-----S-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GY  337 (394)
T ss_pred             EEEECCCCCEEEeecCC-----C-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CE
Confidence            99998765321111111     0 00111  2456777788899999999988764221111001112222221  3 57


Q ss_pred             EEEEeCCCcEEEEeCCCCccccc
Q 010390          379 IVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       379 l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      |+.++.||.|.+.|..+|+.+..
T Consensus       338 l~v~~~~G~l~~ld~~tG~~~~~  360 (394)
T PRK11138        338 LVVGDSEGYLHWINREDGRFVAQ  360 (394)
T ss_pred             EEEEeCCCEEEEEECCCCCEEEE
Confidence            88899999999999999987654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.68  E-value=8.6e-06  Score=71.54  Aligned_cols=189  Identities=17%  Similarity=0.231  Sum_probs=122.9

Q ss_pred             ecCCCcEEEEe-----eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-------
Q 010390           61 TSKNSHIFAVS-----DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-------  128 (512)
Q Consensus        61 ~s~~~~~latg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-------  128 (512)
                      ||+||++|.+.     ...|.|-|||....            ...+.++..|.-.-..+.+.||++.|+.+..       
T Consensus        58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~------------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd  125 (305)
T PF07433_consen   58 FSPDGRLLYTTENDYETGRGVIGVYDAARG------------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPD  125 (305)
T ss_pred             EcCCCCEEEEeccccCCCcEEEEEEECcCC------------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcc
Confidence            49999999986     45688999999733            2447777888777888999999988887632       


Q ss_pred             -----------CCcEEEEeCCCCeeeec--c--cCcCCCEEEEEeeCCCCCeEEEEeCCCc-------EEEEeCCCCCCC
Q 010390          129 -----------DQTIKIWDAEKKKCTGA--L--MGHTGSIKSLCSHPTNSDILVSGSRDGS-------FAIWDLRCKSSP  186 (512)
Q Consensus       129 -----------dg~i~iwd~~~~~~~~~--~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~-------i~vwd~~~~~~~  186 (512)
                                 +-.+..-|..+|+.+..  +  ..|.-.|..+++.+++ ..++..-..|.       |-+++...  ..
T Consensus       126 ~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~--~~  202 (305)
T PF07433_consen  126 SGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGG--AL  202 (305)
T ss_pred             cCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCC--cc
Confidence                       23455566777776655  4  3366788888888876 44444433321       22222111  11


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                      .                    ...............+-+|++++++..+++++-..+.+.+||..++.......      
T Consensus       203 ~--------------------~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~------  256 (305)
T PF07433_consen  203 R--------------------LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP------  256 (305)
T ss_pred             e--------------------eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc------
Confidence            0                    00111112234456899999999999999888889999999999988764332      


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIY  299 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  299 (512)
                             ...+..++..+++ ++++.+ .|.+.
T Consensus       257 -------l~D~cGva~~~~~-f~~ssG-~G~~~  280 (305)
T PF07433_consen  257 -------LPDACGVAPTDDG-FLVSSG-QGQLI  280 (305)
T ss_pred             -------cCceeeeeecCCc-eEEeCC-CccEE
Confidence                   2336667777776 444443 44433

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=8.1e-08  Score=82.94  Aligned_cols=156  Identities=19%  Similarity=0.240  Sum_probs=108.6

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK----  140 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----  140 (512)
                      |-.+++| .+-.|-|-|++++.               .+....++.|.++.|...+..+..|..+|.|...|++.+    
T Consensus       225 gyhfs~G-~sqqv~L~nvetg~---------------~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~  288 (425)
T KOG2695|consen  225 GYHFSVG-LSQQVLLTNVETGH---------------QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN  288 (425)
T ss_pred             eeeeccc-ccceeEEEEeeccc---------------ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC
Confidence            3344444 46678888888763               223346789999999988999999999999999999765    


Q ss_pred             -eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc
Q 010390          141 -KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA  219 (512)
Q Consensus       141 -~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (512)
                       .+...+. |...|+++.......++|++.+.+|+|++||.+..+....                        +....+|
T Consensus       289 ~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~------------------------V~qYeGH  343 (425)
T KOG2695|consen  289 GWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS------------------------VMQYEGH  343 (425)
T ss_pred             CcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc------------------------eeeeecc
Confidence             3344443 8899999987764448899999999999999986554321                        1122333


Q ss_pred             cccEEEE--EEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390          220 SMSITSV--LYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       220 ~~~v~~~--~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~  262 (512)
                      -..-.-+  ..++....+++ +++|...+||.++.+....+...+
T Consensus       344 vN~~a~l~~~v~~eeg~I~s-~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  344 VNLSAYLPAHVKEEEGSIFS-VGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             cccccccccccccccceEEE-ccCeeEEEEEecccCceeeccCCC
Confidence            3222222  22345555665 558999999999998877665443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=3.4e-06  Score=81.34  Aligned_cols=191  Identities=17%  Similarity=0.142  Sum_probs=131.0

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      +.+.|+++     .+++||-|..+|.|++++.+..               ..+...|...      ..+|.+++||+.||
T Consensus        40 D~is~~av-----~~~~~~~GtH~g~v~~~~~~~~---------------~~~~~~~s~~------~~~Gey~asCS~DG   93 (846)
T KOG2066|consen   40 DAISCCAV-----HDKFFALGTHRGAVYLTTCQGN---------------PKTNFDHSSS------ILEGEYVASCSDDG   93 (846)
T ss_pred             hHHHHHHh-----hcceeeeccccceEEEEecCCc---------------cccccccccc------ccCCceEEEecCCC
Confidence            44555555     4689999999999999998653               1222344433      45899999999999


Q ss_pred             cEEEEeCCCCeeeecccCcCCCEEEEEeeCC----CCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPT----NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      +|.|-.+-+.+...++. ...++.+++++|+    ....+++|+.-| +.++.-+=.....                   
T Consensus        94 kv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~-------------------  152 (846)
T KOG2066|consen   94 KVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD-------------------  152 (846)
T ss_pred             cEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc-------------------
Confidence            99999999888877776 4468999999997    236899999888 7776533111110                   


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG  286 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  286 (512)
                            ........++|.++.|.  |..++-+  .|-.|++||+.+.+.+.....+...     .....-...+.|.++.
T Consensus       153 ------~v~l~~~eG~I~~i~W~--g~lIAWa--nd~Gv~vyd~~~~~~l~~i~~p~~~-----~R~e~fpphl~W~~~~  217 (846)
T KOG2066|consen  153 ------SVVLSEGEGPIHSIKWR--GNLIAWA--NDDGVKVYDTPTRQRLTNIPPPSQS-----VRPELFPPHLHWQDED  217 (846)
T ss_pred             ------ceeeecCccceEEEEec--CcEEEEe--cCCCcEEEeccccceeeccCCCCCC-----CCcccCCCceEecCCC
Confidence                  01234557899999996  5667765  3666999999998877666555521     1112224457777655


Q ss_pred             CEEEEEecCCeEEEEEccc
Q 010390          287 VFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       287 ~~l~~~~~dg~i~i~d~~~  305 (512)
                      + |+.| ...+|++..++.
T Consensus       218 ~-LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  218 R-LVIG-WGDSVKICSIKK  234 (846)
T ss_pred             e-EEEe-cCCeEEEEEEec
Confidence            4 4444 555788888763

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.62  E-value=1.5e-05  Score=74.66  Aligned_cols=268  Identities=15%  Similarity=0.152  Sum_probs=135.4

Q ss_pred             cCCCcEEEEe---------eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390           62 SKNSHIFAVS---------DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI  132 (512)
Q Consensus        62 s~~~~~latg---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i  132 (512)
                      |||+++++..         +..+.+.|||++++.              ...+......+....|+|+|+.|+... ++.|
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~--------------~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nl   65 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE--------------ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNL   65 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE--------------EEESS-EETTBSEEEE-SSSTEEEEEE-TTEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc--------------eEECcCCccccccceeecCCCeeEEEe-cCce
Confidence            6888877773         235679999998753              222222257788999999999999875 6789


Q ss_pred             EEEeCCCCeeeeccc-C-------c---------CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          133 KIWDAEKKKCTGALM-G-------H---------TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~-~-------h---------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      .+++..+++..+.-. +       -         -+.-.++-|+|++..+++.--.+..|..+.+........       
T Consensus        66 y~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-------  138 (353)
T PF00930_consen   66 YLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-------  138 (353)
T ss_dssp             EEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------
T ss_pred             EEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------
Confidence            999987775443221 1       0         112346789999944444444455666655431111000       


Q ss_pred             eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                             ....+..+.+-.-|....     .-.+.++|+.+++...... +.     .......
T Consensus       139 -----------------------~yp~~~~~~YPk~G~~np-----~v~l~v~~~~~~~~~~~~~-~~-----~~~~~~~  184 (353)
T PF00930_consen  139 -----------------------QYPEVESIRYPKAGDPNP-----RVSLFVVDLASGKTTELDP-PN-----SLNPQDY  184 (353)
T ss_dssp             -----------------------SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE----H-----HHHTSSE
T ss_pred             -----------------------cCCcccccccCCCCCcCC-----ceEEEEEECCCCcEEEeee-cc-----ccCCCcc
Confidence                                   011344555533333221     1236778887776532110 00     1123345


Q ss_pred             CeeEEEeCCCCCEEEEEe--cCC---eEEEEEcccCCCCceEeeeeceeceeEEEEEEC-CC-CCEEEEecCCCCEEEEe
Q 010390          276 GISSLSQDSNGVFLTASC--MDH---RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-PN-ASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~--~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~-~~~l~~g~~dg~i~iw~  348 (512)
                      -+..+.|.+++..|+..-  .+.   .+.++|..+.....+.......--.......+. ++ +.+|.....+|.-+||-
T Consensus       185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~  264 (353)
T PF00930_consen  185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL  264 (353)
T ss_dssp             EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred             CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence            588999999998444333  332   455666655333322221111100111123443 44 45555555777766655


Q ss_pred             cCCCCCCCceeccccCCeEE-EEeCCCCCCeEEEEeCC
Q 010390          349 VNKPQADPIKLKSHDGEVTA-VNWCPNEAGKIVTSSDD  385 (512)
Q Consensus       349 ~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~d  385 (512)
                      +.........+....-.|+. +.|++++..++.++..+
T Consensus       265 ~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~  302 (353)
T PF00930_consen  265 YDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD  302 (353)
T ss_dssp             EETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred             EcccccceeccccCceeecccceEcCCCCEEEEEecCC
Confidence            54433222344444556755 66788874555566653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.61  E-value=7e-05  Score=65.94  Aligned_cols=244  Identities=13%  Similarity=0.094  Sum_probs=135.9

Q ss_pred             eEEEEEecC-CCcEEEEeeCCCc-EEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----
Q 010390           55 AVSFCKTSK-NSHIFAVSDEDGY-VSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----  128 (512)
Q Consensus        55 ~v~~~~~s~-~~~~latg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----  128 (512)
                      +++.   +| .+..+|.+-.-|. ..+||..++......     ....-+.|.+|      -.|++||++|++.-.    
T Consensus         9 ~~a~---~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-----~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~   74 (305)
T PF07433_consen    9 GVAA---HPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-----WAPPGRHFYGH------GVFSPDGRLLYTTENDYET   74 (305)
T ss_pred             ceee---CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-----cCCCCCEEecC------EEEcCCCCEEEEeccccCC
Confidence            5555   77 5567777766665 678898877542211     11223445566      579999999997644    


Q ss_pred             -CCcEEEEeCC-CCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC-------CCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          129 -DQTIKIWDAE-KKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR-------DGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       129 -dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                       .|.|-|||.. +-+.+.++..|.-.-..+.+.|++ ..|+.+-.       .|.-++ ++.+.+.....        . 
T Consensus        75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~--------l-  143 (305)
T PF07433_consen   75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKL-NLDTMQPSLVY--------L-  143 (305)
T ss_pred             CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceec-ChhhcCCceEE--------E-
Confidence             5889999998 667788888887777888999998 44544421       111111 11111110000        0 


Q ss_pred             cccccccccccccce--ec--ccccccEEEEEEeecCCEEEEEeecCC-------eEEEEeccCccceecccCCCccccc
Q 010390          200 VVKGAHLLSQSKRVS--RR--KAASMSITSVLYLKDEVSIATASAVNS-------IVKFWDTRNLKAQITQAWPHAESSS  268 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~--~~--~~~~~~v~~~~~~~~~~~l~~~g~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~  268 (512)
                            ....+..+.  .+  ..|...+.-+++.++|..++..= ..|       .|-+++....  ......+..    
T Consensus       144 ------d~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q-~qg~~~~~~PLva~~~~g~~--~~~~~~p~~----  210 (305)
T PF07433_consen  144 ------DARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQ-YQGDPGDAPPLVALHRRGGA--LRLLPAPEE----  210 (305)
T ss_pred             ------ecCCCceeeeeecCccccccceeeEEecCCCcEEEEEe-cCCCCCccCCeEEEEcCCCc--ceeccCChH----
Confidence                  000111111  12  34666889999998887666432 222       2333333221  111111110    


Q ss_pred             cccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390          269 AKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA  344 (512)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  344 (512)
                      ......+.+-+|+++.++..+++++ ..|.+.+||..+........+      ..+..++-.+++ ++++.+ .|.+
T Consensus       211 ~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l------~D~cGva~~~~~-f~~ssG-~G~~  279 (305)
T PF07433_consen  211 QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL------PDACGVAPTDDG-FLVSSG-QGQL  279 (305)
T ss_pred             HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc------CceeeeeecCCc-eEEeCC-CccE
Confidence            2334456689999999998776665 778999999866432222111      123345555555 555554 3443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=4.1e-06  Score=74.23  Aligned_cols=98  Identities=23%  Similarity=0.234  Sum_probs=80.3

Q ss_pred             EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390          132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK  211 (512)
Q Consensus       132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (512)
                      +++.+..+.+....+.+|...|..++|+|.+..++..++.+..|+|.|+++.......                      
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy----------------------  232 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY----------------------  232 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe----------------------
Confidence            6667666666666777888999999999998558999999999999999976554432                      


Q ss_pred             cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390          212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                           .. ...+++++|.-+....+.+|..+|.|.+||++..+...
T Consensus       233 -----~a-~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~  272 (463)
T KOG1645|consen  233 -----IA-YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL  272 (463)
T ss_pred             -----ec-cCCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence                 12 26899999999999999999999999999999876544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.55  E-value=3.4e-05  Score=75.28  Aligned_cols=224  Identities=13%  Similarity=0.196  Sum_probs=133.5

Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCC-EEEEEeeCCCCCeEEEEeCCC-----cEEEEeCCCCCCCCC
Q 010390          115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGS-IKSLCSHPTNSDILVSGSRDG-----SFAIWDLRCKSSPKS  188 (512)
Q Consensus       115 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~  188 (512)
                      +|++.+..++.|+.+|.|.+.+ +.-+.++.++.+... |..+ +.-++.++|++.+.|+     .|++|+++..+....
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            4567888999999999887776 344555778877776 4444 4444446888888775     489999975532211


Q ss_pred             ccccceeeecccccccccccccccce--ecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVS--RRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                         +.+...             .++.  .......++.+++.+.+-+.++ +|..+|.|..+.-+-.+.....       
T Consensus       108 ---P~c~~~-------------~ri~~~~np~~~~p~s~l~Vs~~l~~Iv-~Gf~nG~V~~~~GDi~RDrgsr-------  163 (933)
T KOG2114|consen  108 ---PQCLYE-------------HRIFTIKNPTNPSPASSLAVSEDLKTIV-CGFTNGLVICYKGDILRDRGSR-------  163 (933)
T ss_pred             ---cceeee-------------eeeeccCCCCCCCcceEEEEEccccEEE-EEecCcEEEEEcCcchhccccc-------
Confidence               001000             0000  1112355788888888855555 5889999999853321111100       


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV  346 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  346 (512)
                      .........+|+.+++..++..++-...-..|.+|.+... ......+..+.  ....|..+++....+++++.+ .+.+
T Consensus       164 ~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr-~p~~~~ld~~G--~~lnCss~~~~t~qfIca~~e-~l~f  239 (933)
T KOG2114|consen  164 QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR-TPSLKVLDNNG--ISLNCSSFSDGTYQFICAGSE-FLYF  239 (933)
T ss_pred             eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC-CcceeeeccCC--ccceeeecCCCCccEEEecCc-eEEE
Confidence            0022334568999999998887444445668999998742 22233233332  345667777765545555544 4999


Q ss_pred             EecCCCCCCCceec-cccCCeEEE
Q 010390          347 WQVNKPQADPIKLK-SHDGEVTAV  369 (512)
Q Consensus       347 w~~~~~~~~~~~~~-~h~~~v~~v  369 (512)
                      |+....+.. ..+. +|...+..+
T Consensus       240 Y~sd~~~~c-faf~~g~kk~~~~~  262 (933)
T KOG2114|consen  240 YDSDGRGPC-FAFEVGEKKEMLVF  262 (933)
T ss_pred             EcCCCccee-eeecCCCeEEEEEE
Confidence            998865553 3444 666544433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.55  E-value=3e-06  Score=82.09  Aligned_cols=108  Identities=17%  Similarity=0.270  Sum_probs=84.3

Q ss_pred             EEecCCCcEEEEee----CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEE
Q 010390           59 CKTSKNSHIFAVSD----EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKI  134 (512)
Q Consensus        59 ~~~s~~~~~latg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~i  134 (512)
                      +.|+|...++|+++    ..|.|.||- +++++..           -.+..   -.+++++|+|..-.|+.|-.-|.+.+
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-----------~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v   85 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-----------DVTYP---VHATSLCWHPEEFVLAQGWEMGVSDV   85 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-----------ccccc---eehhhhccChHHHHHhhccccceeEE
Confidence            34488888888874    457898884 3333311           11111   23567999999888999999999999


Q ss_pred             EeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          135 WDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC  182 (512)
Q Consensus       135 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  182 (512)
                      |...+.+.-.....|..+|..+.|+++| ..++++..-|.|.+|....
T Consensus        86 ~~~~~~e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   86 QKTNTTETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             EecCCceeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence            9988877776677899999999999998 8999999999999998763

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.52  E-value=9.4e-08  Score=92.54  Aligned_cols=204  Identities=16%  Similarity=0.255  Sum_probs=141.0

Q ss_pred             eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccc
Q 010390          141 KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAAS  220 (512)
Q Consensus       141 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (512)
                      +...+|..|....+|++|+-.. +.|+.|+..|.|+++++.++....                           ...+|.
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~---------------------------s~ncH~ 1143 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEE---------------------------SVNCHQ 1143 (1516)
T ss_pred             ccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccc---------------------------cccccc
Confidence            3456677888999999999876 899999999999999999876543                           456888


Q ss_pred             ccEEEEEEeecCCEEEEEeecCC-eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390          221 MSITSVLYLKDEVSIATASAVNS-IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY  299 (512)
Q Consensus       221 ~~v~~~~~~~~~~~l~~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  299 (512)
                      ..++-+.-+.+|..++++++... ...+|++..--..              ......-.++.|+...+.-+.|+......
T Consensus      1144 SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~--------------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1144 SAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP--------------RHSFDEDKAVKFSNSLQFRALGTEADDAL 1209 (1516)
T ss_pred             cccccccccCCcceeeeeccccCchHHHhccccccCc--------------cccccccceeehhhhHHHHHhcccccceE
Confidence            99999999999999888776555 5678988752211              11123456788887766666676667899


Q ss_pred             EEEcccCCCCceEe-eeeceece-eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCC
Q 010390          300 LYNVLQLDKGPIQH-FSGCRIES-FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAG  377 (512)
Q Consensus       300 i~d~~~~~~~~~~~-~~~~~~~~-~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  377 (512)
                      +||+.+...  +.+ +.+..... .-....|+|+..+++   +||  .+||++..+. +..+......+. -.|+|.| .
T Consensus      1210 ~YDvqT~~~--l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a-Ih~FD~ft~~~~-G~FHP~g-~ 1279 (1516)
T KOG1832|consen 1210 LYDVQTCSP--LQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA-IHRFDQFTDYGG-GGFHPSG-N 1279 (1516)
T ss_pred             EEecccCcH--HHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHH-Hhhhhhheeccc-ccccCCC-c
Confidence            999876432  222 11111111 113478999998887   355  5899988754 344444332232 3499999 6


Q ss_pred             eEEEEeCCCcEEEEeCCCCccccc
Q 010390          378 KIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       378 ~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      .++.-+.     |||+.+.++++.
T Consensus      1280 eVIINSE-----IwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1280 EVIINSE-----IWDMRTFKLLHS 1298 (1516)
T ss_pred             eEEeech-----hhhhHHHHHHhc
Confidence            6666543     899999887765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.50  E-value=6.4e-06  Score=72.86  Aligned_cols=224  Identities=13%  Similarity=0.026  Sum_probs=125.5

Q ss_pred             CCcEEEEeCCCCeeeecccCc--CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          129 DQTIKIWDAEKKKCTGALMGH--TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      +|+|..||..+|+.+.....-  .....+... +.+ ..+++++.++.|..||..+++........              
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~--------------   65 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDG-GRVYVASGDGNLYALDAKTGKVLWRFDLP--------------   65 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EET-TEEEEEETTSEEEEEETTTSEEEEEEECS--------------
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeC-CEEEEEcCCCEEEEEECCCCCEEEEeecc--------------
Confidence            688999999999988777531  122221122 234 56777789999999999877643322110              


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc-cCCCccccccccccccCeeEEEeCCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ-AWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                                    ..+.... ...+..+++.. .++.|..+|..+++..... ....+    ...  ........+  +
T Consensus        66 --------------~~~~~~~-~~~~~~v~v~~-~~~~l~~~d~~tG~~~W~~~~~~~~----~~~--~~~~~~~~~--~  121 (238)
T PF13360_consen   66 --------------GPISGAP-VVDGGRVYVGT-SDGSLYALDAKTGKVLWSIYLTSSP----PAG--VRSSSSPAV--D  121 (238)
T ss_dssp             --------------SCGGSGE-EEETTEEEEEE-TTSEEEEEETTTSCEEEEEEE-SSC----TCS--TB--SEEEE--E
T ss_pred             --------------cccccee-eeccccccccc-ceeeeEecccCCcceeeeecccccc----ccc--cccccCceE--e
Confidence                          0000001 22344444433 6889999999999887762 21110    000  111122222  3


Q ss_pred             CCEEEEEecCCeEEEEEcccCCCCceEeeeeceece-------eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIES-------FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      +..++++..++.|..+|..+++..-...........       ....+.+. ++ .++.++.++.+.-+|+.+++.. ..
T Consensus       122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~-w~  198 (238)
T PF13360_consen  122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKL-WS  198 (238)
T ss_dssp             TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEE-EE
T ss_pred             cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEE-EE
Confidence            778888888999999998765432222221111000       11222333 44 6666766775444499888743 22


Q ss_pred             eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      ..  ...+..+ ...++ ..|+.++.++.|..||+.+|+.+
T Consensus       199 ~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  199 KP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTTTEEE
T ss_pred             ec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCCCCEE
Confidence            22  2223332 23455 57777779999999999999853

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.49  E-value=0.00011  Score=70.27  Aligned_cols=265  Identities=10%  Similarity=0.043  Sum_probs=145.1

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEE-EEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFD-LCWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      +..++.++.+|.+.-+|.++++..-             +.... +.+.+ ...  .+..++.+..++.|.-+|.++|+.+
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W-------------~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~  183 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAW-------------QTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVK  183 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcc-------------cccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence            4566778889999999998875421             11111 11211 111  2446677778999999999999988


Q ss_pred             ecccCcCCCE-----EEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc-
Q 010390          144 GALMGHTGSI-----KSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK-  217 (512)
Q Consensus       144 ~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  217 (512)
                      ..+......+     .+-...  + ..++.++.+|.+..+|..+++..........       .+.      .....+. 
T Consensus       184 W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~-------~~~------~~~~~~~~  247 (394)
T PRK11138        184 WTVNLDVPSLTLRGESAPATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQP-------TGA------TEIDRLVD  247 (394)
T ss_pred             eeecCCCCcccccCCCCCEEE--C-CEEEEEcCCCEEEEEEccCChhhheeccccC-------CCc------cchhcccc
Confidence            7665321110     011111  2 3566677889999999888765432211000       000      0000000 


Q ss_pred             cccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCe
Q 010390          218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR  297 (512)
Q Consensus       218 ~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  297 (512)
                      ....++    .  .+..+++++ .+|.+..+|..+++........             ....+..  .+..++.++.+|.
T Consensus       248 ~~~sP~----v--~~~~vy~~~-~~g~l~ald~~tG~~~W~~~~~-------------~~~~~~~--~~~~vy~~~~~g~  305 (394)
T PRK11138        248 VDTTPV----V--VGGVVYALA-YNGNLVALDLRSGQIVWKREYG-------------SVNDFAV--DGGRIYLVDQNDR  305 (394)
T ss_pred             cCCCcE----E--ECCEEEEEE-cCCeEEEEECCCCCEEEeecCC-------------CccCcEE--ECCEEEEEcCCCe
Confidence            000111    1  234455434 6899999999998876643211             0111222  4557777888999


Q ss_pred             EEEEEcccCCCCceEe-eeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE-EEeCCCC
Q 010390          298 IYLYNVLQLDKGPIQH-FSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA-VNWCPNE  375 (512)
Q Consensus       298 i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~-v~~~~~~  375 (512)
                      +..+|..+++..-... ........    ...  .+..|+.++.+|.+++.|..+++.. ....-....+.+ ..+  .+
T Consensus       306 l~ald~~tG~~~W~~~~~~~~~~~s----p~v--~~g~l~v~~~~G~l~~ld~~tG~~~-~~~~~~~~~~~s~P~~--~~  376 (394)
T PRK11138        306 VYALDTRGGVELWSQSDLLHRLLTA----PVL--YNGYLVVGDSEGYLHWINREDGRFV-AQQKVDSSGFLSEPVV--AD  376 (394)
T ss_pred             EEEEECCCCcEEEcccccCCCcccC----CEE--ECCEEEEEeCCCEEEEEECCCCCEE-EEEEcCCCcceeCCEE--EC
Confidence            9999986643211000 00111111    111  2567888899999999999888653 232222222222 222  23


Q ss_pred             CCeEEEEeCCCcEEEEeC
Q 010390          376 AGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       376 ~~~l~s~~~dg~i~vwd~  393 (512)
                       ..|+.++.||.|+.+++
T Consensus       377 -~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        377 -DKLLIQARDGTVYAITR  393 (394)
T ss_pred             -CEEEEEeCCceEEEEeC
Confidence             47888899999988764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.49  E-value=1.3e-05  Score=70.87  Aligned_cols=199  Identities=19%  Similarity=0.137  Sum_probs=112.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc-cccceeee
Q 010390          119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN-CAESFVFS  197 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~  197 (512)
                      ++..+++++.++.|..||..+|+.+..+.. ...+...... .+ ..++.++.++.|..+|..+++..... ...     
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~-----  106 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTS-----  106 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ET-TEEEEEETTSEEEEEETTTSCEEEEEEE-S-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cc-cccccccceeeeEecccCCcceeeeecccc-----
Confidence            567788888999999999999998877654 2221111121 23 56677778889999998887754321 000     


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                        ..... ..........+..+++.. .++.|..+|.++++................. ....+
T Consensus       107 ------------------~~~~~-~~~~~~~~~~~~~~~~~~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-~~~~~  165 (238)
T PF13360_consen  107 ------------------SPPAG-VRSSSSPAVDGDRLYVGT-SSGKLVALDPKTGKLLWKYPVGEPRGSSPIS-SFSDI  165 (238)
T ss_dssp             ------------------SCTCS-TB--SEEEEETTEEEEEE-TCSEEEEEETTTTEEEEEEESSTT-SS--EE-EETTE
T ss_pred             ------------------ccccc-cccccCceEecCEEEEEe-ccCcEEEEecCCCcEEEEeecCCCCCCccee-eeccc
Confidence                              00000 111222222366666644 5999999999999887665432211000000 11112


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      ..-....++ .++.+..++.+..+|+.+.+.  +  .... ... .. .....++..|+.++.++.|..||+.+++.
T Consensus       166 ~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~--~--w~~~-~~~-~~-~~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  166 NGSPVISDG-RVYVSSGDGRVVAVDLATGEK--L--WSKP-ISG-IY-SLPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             EEEEECCTT-EEEEECCTSSEEEEETTTTEE--E--EEEC-SS--EC-ECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             ccceEEECC-EEEEEcCCCeEEEEECCCCCE--E--EEec-CCC-cc-CCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            222222344 677777777544348866441  1  1111 111 11 11346778888887899999999998865

...

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.48  E-value=0.00045  Score=58.14  Aligned_cols=104  Identities=13%  Similarity=0.054  Sum_probs=67.3

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      -|++++.|+..|.+++-+.+++..             ...+..-..--......+++..+..|+.|++.+..|..+..++
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~-------------~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV  128 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQ-------------IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV  128 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhh-------------eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence            367899999999999999988743             2222221111112234568999999999999999999999988


Q ss_pred             ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390          144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR  181 (512)
Q Consensus       144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  181 (512)
                      ...+...+.-.+-+..|-. ..|..+...|.|.--..+
T Consensus       129 ykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  129 YKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             EecccCCceeccceecCCC-ceEEEEeccceEEEEccC
Confidence            8876444333344455533 344444555655544443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=2.2e-07  Score=90.14  Aligned_cols=221  Identities=13%  Similarity=0.130  Sum_probs=147.6

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC-cEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG-SFAI  177 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~v  177 (512)
                      +..+.+..|....+|++|+-+.++|+.|+..|.|+++++.+|.......+|..+|+-+.-+.++..+|.+++... -..+
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence            446677889999999999999999999999999999999999999999999999999998888855555555544 5778


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                      |++.......                              ..-..-.++.|+.....-+. |.......+||+.++....
T Consensus      1172 W~~~s~~~~~------------------------------Hsf~ed~~vkFsn~~q~r~~-gt~~d~a~~YDvqT~~~l~ 1220 (1516)
T KOG1832|consen 1172 WDASSTGGPR------------------------------HSFDEDKAVKFSNSLQFRAL-GTEADDALLYDVQTCSPLQ 1220 (1516)
T ss_pred             hccccccCcc------------------------------ccccccceeehhhhHHHHHh-cccccceEEEecccCcHHH
Confidence            9986421111                              01123456677655333333 5456779999999988776


Q ss_pred             cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  337 (512)
                      +...+..       .....-++..|+|+..+++   .||  .+||++..  ..+..+.....   ...-.|+|.|.-++.
T Consensus      1221 tylt~~~-------~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~--~aIh~FD~ft~---~~~G~FHP~g~eVII 1283 (1516)
T KOG1832|consen 1221 TYLTDTV-------TSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIP--EAIHRFDQFTD---YGGGGFHPSGNEVII 1283 (1516)
T ss_pred             HhcCcch-------hhhhhccccccCCCcceEe---eCc--eeeeeccH--HHHhhhhhhee---cccccccCCCceEEe
Confidence            5433221       1112236788999887765   344  47998764  23333332221   112468999998887


Q ss_pred             ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCC
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE  375 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~  375 (512)
                      .+     .|||+++.+.... ..  .-.-..|.|+..|
T Consensus      1284 NS-----EIwD~RTF~lLh~-VP--~Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1284 NS-----EIWDMRTFKLLHS-VP--SLDQCAVTFNSTG 1313 (1516)
T ss_pred             ec-----hhhhhHHHHHHhc-Cc--cccceEEEeccCc
Confidence            65     4899988654311 11  1123456676666

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=2.3e-05  Score=76.39  Aligned_cols=209  Identities=10%  Similarity=0.113  Sum_probs=128.8

Q ss_pred             eeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc-EEEEEEeecCCEEE
Q 010390          158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS-ITSVLYLKDEVSIA  236 (512)
Q Consensus       158 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~  236 (512)
                      |++.+ ..++.|+.+|.|.+.+-.-.                            ....+.++... +..+....+...++
T Consensus        31 ~~s~~-~~vvigt~~G~V~~Ln~s~~----------------------------~~~~fqa~~~siv~~L~~~~~~~~L~   81 (933)
T KOG2114|consen   31 CSSST-GSVVIGTADGRVVILNSSFQ----------------------------LIRGFQAYEQSIVQFLYILNKQNFLF   81 (933)
T ss_pred             EcCCC-ceEEEeeccccEEEecccce----------------------------eeehheecchhhhhHhhcccCceEEE
Confidence            55555 78999999999888764311                            11122333334 33333333335666


Q ss_pred             EEeecCC----eEEEEeccCcccee--cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc
Q 010390          237 TASAVNS----IVKFWDTRNLKAQI--TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP  310 (512)
Q Consensus       237 ~~g~~dg----~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  310 (512)
                      +.|-.++    .|++||++..+...  .....+............++.+++++.+-+.+++|-.+|.|..+.-.-.....
T Consensus        82 sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg  161 (933)
T KOG2114|consen   82 SVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG  161 (933)
T ss_pred             EEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence            6664444    69999998643111  00000000000112235678899999999999999999999998642222222


Q ss_pred             eEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390          311 IQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL  390 (512)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v  390 (512)
                      .+..-.+.....++.+++..++..++-......|.+|.+.........+..|...+.|..+++.. ..++.++. ..+.+
T Consensus       162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-~qfIca~~-e~l~f  239 (933)
T KOG2114|consen  162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-YQFICAGS-EFLYF  239 (933)
T ss_pred             cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC-ccEEEecC-ceEEE
Confidence            33344455567789999999988733223345699999985553344577888899999999876 44555544 35999


Q ss_pred             EeCCCCc
Q 010390          391 WSLENSR  397 (512)
Q Consensus       391 wd~~~~~  397 (512)
                      |+.+...
T Consensus       240 Y~sd~~~  246 (933)
T KOG2114|consen  240 YDSDGRG  246 (933)
T ss_pred             EcCCCcc
Confidence            9987544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.42  E-value=9.2e-05  Score=75.24  Aligned_cols=203  Identities=13%  Similarity=0.127  Sum_probs=129.5

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD  129 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d  129 (512)
                      .+.|.++.|   .-+++-++.+...|.|.+-|.++...              ...-.-.+.|.+++|+||++.++..+.+
T Consensus        68 d~~i~s~~f---l~d~~~i~v~~~~G~iilvd~et~~~--------------eivg~vd~GI~aaswS~Dee~l~liT~~  130 (1265)
T KOG1920|consen   68 DDEIVSVQF---LADTNSICVITALGDIILVDPETLEL--------------EIVGNVDNGISAASWSPDEELLALITGR  130 (1265)
T ss_pred             CcceEEEEE---ecccceEEEEecCCcEEEEcccccce--------------eeeeeccCceEEEeecCCCcEEEEEeCC
Confidence            367888888   77888888899999999998766532              1122345799999999999999988888


Q ss_pred             CcEEEEeC----CC-------------------CeeeecccCc---------------------CCCEEEEEeeCCCCCe
Q 010390          130 QTIKIWDA----EK-------------------KKCTGALMGH---------------------TGSIKSLCSHPTNSDI  165 (512)
Q Consensus       130 g~i~iwd~----~~-------------------~~~~~~~~~h---------------------~~~v~~l~~~~~~~~~  165 (512)
                      +++.+-.-    -.                   |+....|++.                     .+.=++|+|--+| .+
T Consensus       131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~  209 (1265)
T KOG1920|consen  131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EY  209 (1265)
T ss_pred             cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cE
Confidence            87766432    00                   0111112210                     1112358898887 77


Q ss_pred             EEEEe----CC-CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee
Q 010390          166 LVSGS----RD-GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA  240 (512)
Q Consensus       166 l~s~~----~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~  240 (512)
                      +++..    .+ ..|++||-+ +......                           ....+.-.+++|-|.|..+++...
T Consensus       210 fAVs~~~~~~~~RkirV~drE-g~Lns~s---------------------------e~~~~l~~~LsWkPsgs~iA~iq~  261 (1265)
T KOG1920|consen  210 FAVSFVESETGTRKIRVYDRE-GALNSTS---------------------------EPVEGLQHSLSWKPSGSLIAAIQC  261 (1265)
T ss_pred             EEEEEEeccCCceeEEEeccc-chhhccc---------------------------CcccccccceeecCCCCeEeeeee
Confidence            77732    23 799999977 3221110                           111234467899999988887542


Q ss_pred             --cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEE---EecCCeEEEEEcccC
Q 010390          241 --VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTA---SCMDHRIYLYNVLQL  306 (512)
Q Consensus       241 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~  306 (512)
                        .|+.|.+|.-+..+.-.-. .       ........+..++|+.++..|++   ......|++|-+.+.
T Consensus       262 ~~sd~~IvffErNGL~hg~f~-l-------~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  262 KTSDSDIVFFERNGLRHGEFV-L-------PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cCCCCcEEEEecCCccccccc-c-------CCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence              3567888886654332110 0       11222233899999999999987   444455999987554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.37  E-value=6.2e-06  Score=80.67  Aligned_cols=148  Identities=21%  Similarity=0.243  Sum_probs=114.5

Q ss_pred             CCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC---------CCcEE
Q 010390           63 KNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---------DQTIK  133 (512)
Q Consensus        63 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---------dg~i~  133 (512)
                      .+++++.+|...|.|.+-|.++.+.             +.++.+|++.|.++..  .|+.|+++|.         |..|+
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~-------------iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~Fvk  249 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFET-------------IHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVK  249 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCce-------------eeeeeccccceeeeec--cCCeEEEeecccccccccccchhh
Confidence            4789999999999999999987654             8889999999988776  6889999886         56789


Q ss_pred             EEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccc
Q 010390          134 IWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRV  213 (512)
Q Consensus       134 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (512)
                      |||++..+.+.-+.-+.++ .-+.|+|.-...++.++..|...+-|..+-....                       ...
T Consensus       250 VYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-----------------------~~~  305 (1118)
T KOG1275|consen  250 VYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-----------------------AGV  305 (1118)
T ss_pred             hhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc-----------------------cce
Confidence            9999998887777666554 4577899887889999999999999843322111                       000


Q ss_pred             eecccccccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390          214 SRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDT  250 (512)
Q Consensus       214 ~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~  250 (512)
                      .........+..+++++++..++. |..+|.|.+|.-
T Consensus       306 ~~v~p~~s~i~~fDiSsn~~alaf-gd~~g~v~~wa~  341 (1118)
T KOG1275|consen  306 KMVNPNGSGISAFDISSNGDALAF-GDHEGHVNLWAD  341 (1118)
T ss_pred             eEEccCCCcceeEEecCCCceEEE-ecccCcEeeecC
Confidence            111222345899999999999988 668999999973

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.36  E-value=0.00016  Score=69.26  Aligned_cols=114  Identities=12%  Similarity=0.116  Sum_probs=87.3

Q ss_pred             EEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 010390           56 VSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIW  135 (512)
Q Consensus        56 v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iw  135 (512)
                      |.+-+++..+++++.|+.-|.+++|+-..+..            ......+-.+.+..+..+++..++|.|+..|.|.|+
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~------------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~  103 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM------------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVF  103 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhh------------hcccccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence            33444477899999999999999999876542            122333355667778888888888899999999999


Q ss_pred             eCCCCeeee-----cc-cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          136 DAEKKKCTG-----AL-MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC  182 (512)
Q Consensus       136 d~~~~~~~~-----~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  182 (512)
                      -++.+.+..     .. ..|...|++++|++++ ..+++|...|.|.+-.+..
T Consensus       104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhhccCCCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence            887643211     11 2378899999999988 8999999999999988875

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.32  E-value=3.6e-07  Score=85.58  Aligned_cols=207  Identities=18%  Similarity=0.280  Sum_probs=135.7

Q ss_pred             CCEEEEEeeCCCC-CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390          151 GSIKSLCSHPTNS-DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL  229 (512)
Q Consensus       151 ~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  229 (512)
                      ..+.|+++.-+.. .+++.|..+|.|-+-.++.....                         ......++....++++|+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------------------------s~E~tp~~ar~Ct~lAwn  111 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------------------------SAEVTPGYARPCTSLAWN  111 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------------------cceecccccccccccccc
Confidence            3566666554432 57888889999999888754322                         111334566788999999


Q ss_pred             ecCCEEEEEee----cCCeEEEEeccCccceecccCCCcccccccc-ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc
Q 010390          230 KDEVSIATASA----VNSIVKFWDTRNLKAQITQAWPHAESSSAKE-TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL  304 (512)
Q Consensus       230 ~~~~~l~~~g~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  304 (512)
                      +-....+++|-    .|..+.|||+.+.-.......       .+. ....+..+++|..+.+.+++|.....+.++|++
T Consensus       112 eLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~-------~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR  184 (783)
T KOG1008|consen  112 ELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP-------LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR  184 (783)
T ss_pred             cccHHHHHhhhhhhcccCCccceecccccCCCcccc-------ccccccccCccccccccCcchhhcccccchhhhhhhh
Confidence            86555555563    356799999987633111110       111 234456689999999999999999999999997


Q ss_pred             cCCCCceEeeeeceeceeEEEEEECC-CCCEEEEecCCCCEEEEe-cCCCCCCCceecccc----CCeEEEEeCCCCCCe
Q 010390          305 QLDKGPIQHFSGCRIESFYVKSEICP-NASHILSGSSDGNAYVWQ-VNKPQADPIKLKSHD----GEVTAVNWCPNEAGK  378 (512)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iw~-~~~~~~~~~~~~~h~----~~v~~v~~~~~~~~~  378 (512)
                      ..... ...+.    ...+..+..+| .++++++-. ||.|.+|| ..+-+.+.......+    ..+..++|+|....+
T Consensus       185 qs~~~-~~svn----Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl  258 (783)
T KOG1008|consen  185 QSLDS-VSSVN----TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL  258 (783)
T ss_pred             hhhhh-hhhhh----hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence            42111 11111    11234467778 678887766 99999999 444444333332222    249999999988788


Q ss_pred             EEEEeCC-CcEEEEeCCC
Q 010390          379 IVTSSDD-YTVRLWSLEN  395 (512)
Q Consensus       379 l~s~~~d-g~i~vwd~~~  395 (512)
                      +++...| ++|+++|+..
T Consensus       259 la~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  259 LAVLSRDSITIRLYDICV  276 (783)
T ss_pred             hhhhccCcceEEEecccc
Confidence            8888866 7899999864

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.28  E-value=1.7e-05  Score=74.52  Aligned_cols=80  Identities=14%  Similarity=0.209  Sum_probs=64.2

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      ..........|.++++   +|+.+.|+.|+.||.|.+||...+               +..+..+.-..+.++|+|+|..
T Consensus       252 svtsipL~s~v~~ca~---sp~E~kLvlGC~DgSiiLyD~~~~---------------~t~~~ka~~~P~~iaWHp~gai  313 (545)
T PF11768_consen  252 SVTSIPLPSQVICCAR---SPSEDKLVLGCEDGSIILYDTTRG---------------VTLLAKAEFIPTLIAWHPDGAI  313 (545)
T ss_pred             EEEEEecCCcceEEec---CcccceEEEEecCCeEEEEEcCCC---------------eeeeeeecccceEEEEcCCCcE
Confidence            3334456667777777   999999999999999999998765               3333344556889999999999


Q ss_pred             EEEEeCCCcEEEEeCCCC
Q 010390          123 ILTASGDQTIKIWDAEKK  140 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~  140 (512)
                      +++|+..|.+.+||+.-.
T Consensus       314 ~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  314 FVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCceEEEEEeecC
Confidence            999999999999998643

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=7.3e-05  Score=72.55  Aligned_cols=146  Identities=12%  Similarity=0.163  Sum_probs=97.7

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-----CCEEEEEeCCCcEEEEeCC
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-----DTNILTASGDQTIKIWDAE  138 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-----~~~l~s~~~dg~i~iwd~~  138 (512)
                      +|.++|+|+.||.|.|-.+-+...             ..++ ....++.+++++|+     .+++++||.-| +.++.-.
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~-------------~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~  146 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDE-------------ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN  146 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCcc-------------ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence            589999999999999998766532             2222 23578999999997     57899999988 7776522


Q ss_pred             --CCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceec
Q 010390          139 --KKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR  216 (512)
Q Consensus       139 --~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (512)
                        ..+....+..-.++|.++.|.  + +++|=+..+| |++||+...+.+.......                     ..
T Consensus       147 wlgnk~~v~l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l~~i~~p~---------------------~~  201 (846)
T KOG2066|consen  147 WLGNKDSVVLSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRLTNIPPPS---------------------QS  201 (846)
T ss_pred             hhcCccceeeecCccceEEEEec--C-cEEEEecCCC-cEEEeccccceeeccCCCC---------------------CC
Confidence              111122455567899999997  3 7777777664 8999998776554332211                     00


Q ss_pred             ccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC
Q 010390          217 KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN  252 (512)
Q Consensus       217 ~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~  252 (512)
                      ...+.....+.|.++.+.++  | ...+|++..++.
T Consensus       202 ~R~e~fpphl~W~~~~~LVI--G-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  202 VRPELFPPHLHWQDEDRLVI--G-WGDSVKICSIKK  234 (846)
T ss_pred             CCcccCCCceEecCCCeEEE--e-cCCeEEEEEEec
Confidence            11122344577776665554  5 577899998883

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.23  E-value=0.00043  Score=67.03  Aligned_cols=242  Identities=12%  Similarity=0.049  Sum_probs=122.6

Q ss_pred             cCCCcEEEEeeC-CCcEEEEECCCCCCccccccccccccceeccc--cCCCcEEE-----EEEecCCCEEE-EEeCCCcE
Q 010390           62 SKNSHIFAVSDE-DGYVSLFDSRRKLPSFACHRENAEKARISDWV--AHQNAIFD-----LCWIKEDTNIL-TASGDQTI  132 (512)
Q Consensus        62 s~~~~~latg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~-----l~~s~~~~~l~-s~~~dg~i  132 (512)
                      ..||+||..-.. ++.|-..+++..+......-.+.....-..+.  .+++-|.+     +=+.|||+.+. +.-..+.+
T Consensus       138 ~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v  217 (635)
T PRK02888        138 TYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLF  217 (635)
T ss_pred             ccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEE
Confidence            457888888764 55666666665433221111111000000111  12233322     33455676554 33335678


Q ss_pred             EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCCCCCCccc---------cceee-e-
Q 010390          133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKSSPKSNCA---------ESFVF-S-  197 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~---------~~~~~-~-  197 (512)
                      .+.|.++.+...++.-- +....+.+++++ .++++.+.+    .++..-+.........+..         ..... . 
T Consensus       218 SvID~etmeV~~qV~Vd-gnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~g  295 (635)
T PRK02888        218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGG  295 (635)
T ss_pred             EEEECccceEEEEEEeC-CCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECC
Confidence            88888887776665432 244567788887 555555421    1222222211110000000         00000 0 


Q ss_pred             --cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390          198 --SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       198 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                        .....................-......+.++|||+++++++..+..|.+.|+.+.+....-.............-..
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl  375 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL  375 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence              000000000000012223333455677899999999999999999999999999866432111110000001111123


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                      .....+|+++|....+-..|..|..||+..
T Consensus       376 GPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        376 GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            455688999999888888999999999865

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.18  E-value=0.0027  Score=60.50  Aligned_cols=221  Identities=14%  Similarity=0.184  Sum_probs=110.9

Q ss_pred             cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390          131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS  210 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (512)
                      .|.||+. .|+.+.++.-..+.|.++.|..+  ..|+....||.++++|+.... ....  .                  
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~-~fsl--~------------------  117 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEF-QFSL--G------------------  117 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCCCce-eech--h------------------
Confidence            4999985 56666666544489999999874  467777899999999986433 1000  0                  


Q ss_pred             ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc-CeeE-EEeCCCCCE
Q 010390          211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH-GISS-LSQDSNGVF  288 (512)
Q Consensus       211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~-~~~~~~~~~  288 (512)
                      .........+..+....+..+|-.+++   .++.+.+.+-.............+..  ....+.. .... ..++.+...
T Consensus       118 ~~i~~~~v~e~~i~~~~~~~~GivvLt---~~~~~~~v~n~~~~~~~~~~~~~p~~--~~~~~~~~~~~~i~~l~~~~~~  192 (410)
T PF04841_consen  118 EEIEEEKVLECRIFAIWFYKNGIVVLT---GNNRFYVVNNIDEPVKLRRLPEIPGL--WTKFHWWPSWTVIPLLSSDRVV  192 (410)
T ss_pred             hhccccCcccccccccccCCCCEEEEC---CCCeEEEEeCccccchhhccccCCCc--ccccccccccccceEeecCcce
Confidence            000001111112222233334422222   24444443222211111100000000  0000000 1111 334455555


Q ss_pred             EEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec-cccCCeE
Q 010390          289 LTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK-SHDGEVT  367 (512)
Q Consensus       289 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~  367 (512)
                      .+....++.+.+.+-.....     +   .....+..+++||++++||.-..+|.+.+.+.+-.+.. ..+. .-.....
T Consensus       193 ~i~~~~g~~i~~i~~~~~~~-----i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~-~e~~~~~~~~p~  263 (410)
T PF04841_consen  193 EILLANGETIYIIDENSFKQ-----I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL-CEFDTDSKSPPK  263 (410)
T ss_pred             EEEEecCCEEEEEEcccccc-----c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccccee-EEeecCcCCCCc
Confidence            55555666666555322100     1   11245788999999999999999999999876544332 2222 2245667


Q ss_pred             EEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          368 AVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       368 ~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      .+.|+-++ ..++.-  +..|.+..
T Consensus       264 ~~~WCG~d-av~l~~--~~~l~lvg  285 (410)
T PF04841_consen  264 QMAWCGND-AVVLSW--EDELLLVG  285 (410)
T ss_pred             EEEEECCC-cEEEEe--CCEEEEEC
Confidence            78887654 333332  33455554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.15  E-value=0.0029  Score=62.17  Aligned_cols=305  Identities=8%  Similarity=-0.029  Sum_probs=149.7

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEE--EEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIF--DLCWIKEDTNILTASGDQTIKIWDAEKKKC  142 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  142 (512)
                      +..+.+++.++.|.-.|..+++..-.......       ...+...+.  .+... ++..++.++.++.|+-+|.++|+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~-------~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~  132 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLP-------ADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ  132 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCC-------ccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE
Confidence            44566677789999999887754221100000       000000110  11111 226788888899999999999998


Q ss_pred             eecccCcCCC-----EE-EEEeeCCCCCeEEEEe---------CCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          143 TGALMGHTGS-----IK-SLCSHPTNSDILVSGS---------RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       143 ~~~~~~h~~~-----v~-~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      +..+......     +. +..+.  + .+++.++         .+|.|..+|..+++..-........        ....
T Consensus       133 ~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~--------~~~~  201 (488)
T cd00216         133 VWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD--------PNAF  201 (488)
T ss_pred             eeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC--------cCCC
Confidence            8776543221     11 12222  2 3444443         3678888999888765433211000        0000


Q ss_pred             cccccc-eecccccccE-EEEEEeecCCEEEEEeecCC------------------eEEEEeccCccceecccCCCcccc
Q 010390          208 SQSKRV-SRRKAASMSI-TSVLYLKDEVSIATASAVNS------------------IVKFWDTRNLKAQITQAWPHAESS  267 (512)
Q Consensus       208 ~~~~~~-~~~~~~~~~v-~~~~~~~~~~~l~~~g~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~  267 (512)
                      ...... .........+ ...++.+.+..+++ ++.++                  .|.-+|..+++.............
T Consensus       202 ~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~v-g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~  280 (488)
T cd00216         202 PTWGPDRQMWGPGGGTSWASPTYDPKTNLVYV-GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLW  280 (488)
T ss_pred             CCCCCCcceecCCCCCccCCeeEeCCCCEEEE-ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCc
Confidence            000000 0000000111 12344444455554 32343                  799999999998876532211000


Q ss_pred             ccccccccC-eeEEEeCCCCC---EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-----
Q 010390          268 SAKETRLHG-ISSLSQDSNGV---FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-----  338 (512)
Q Consensus       268 ~~~~~~~~~-i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-----  338 (512)
                       .......+ +..+. .-++.   .+++++.+|.+..+|..+++..-......       ..++.+|  ..++.+     
T Consensus       281 -~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-------~~~~~~~--~~vyv~~~~~~  349 (488)
T cd00216         281 -DYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-------QPMAYDP--GLVYLGAFHIP  349 (488)
T ss_pred             -ccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-------cccccCC--ceEEEcccccc
Confidence             00011111 11111 11332   67788889999999987754322221110       0122333  222221     


Q ss_pred             -------------cCCCCEEEEecCCCCCCCceecc-cc------CCe--EEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          339 -------------SSDGNAYVWQVNKPQADPIKLKS-HD------GEV--TAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       339 -------------~~dg~i~iw~~~~~~~~~~~~~~-h~------~~v--~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                                   ..+|.+.-.|+.+++.....-.+ +.      .+.  ..+..  .+ .+|+.++.||.|+.+|..+|
T Consensus       350 ~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG  426 (488)
T cd00216         350 LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTG  426 (488)
T ss_pred             ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCC
Confidence                         23566777777777653222111 00      111  11222  33 58888899999999999999


Q ss_pred             ccccccc
Q 010390          397 RCSSMRS  403 (512)
Q Consensus       397 ~~~~~~~  403 (512)
                      +.+-...
T Consensus       427 ~~lW~~~  433 (488)
T cd00216         427 KELWKFR  433 (488)
T ss_pred             ceeeEEE
Confidence            9776533

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.13  E-value=0.00039  Score=66.21  Aligned_cols=233  Identities=13%  Similarity=0.136  Sum_probs=111.1

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      ...-.+..+++   +|+|+++++++ ||.-.|+......                  ....+.-...+|.+.+ .+|+-.
T Consensus        30 ~~~~~p~~ls~---npngr~v~V~g-~geY~iyt~~~~r------------------~k~~G~g~~~vw~~~n-~yAv~~   86 (443)
T PF04053_consen   30 SCEIYPQSLSH---NPNGRFVLVCG-DGEYEIYTALAWR------------------NKAFGSGLSFVWSSRN-RYAVLE   86 (443)
T ss_dssp             E-SS--SEEEE----TTSSEEEEEE-TTEEEEEETTTTE------------------EEEEEE-SEEEE-TSS-EEEEE-
T ss_pred             CCCcCCeeEEE---CCCCCEEEEEc-CCEEEEEEccCCc------------------ccccCceeEEEEecCc-cEEEEE
Confidence            34556889999   99999999955 7888888743221                  0122455678899855 466666


Q ss_pred             CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      ..++|.|+.--+.+....+... ..+..|-.   | .+|...+.+ .|.+||+.+++.....                  
T Consensus        87 ~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~~i------------------  142 (443)
T PF04053_consen   87 SSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIRRI------------------  142 (443)
T ss_dssp             TTS-EEEEETTEE-TT-----S-S-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEEEE------------------
T ss_pred             CCCeEEEEEcCccccceEEcCC-cccceEEc---C-cEEEEECCC-CEEEEEhhHcceeeEE------------------
Confidence            6888999642233333344322 23554432   5 667766654 8999999977543322                  


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV  287 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (512)
                               .  -..|..+.|++++..++..+  +..+.+++.+.........................|.+..|..+  
T Consensus       143 ---------~--v~~vk~V~Ws~~g~~val~t--~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--  207 (443)
T PF04053_consen  143 ---------D--VSAVKYVIWSDDGELVALVT--KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--  207 (443)
T ss_dssp             ---------S--S-E-EEEEE-TTSSEEEEE---S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--
T ss_pred             ---------e--cCCCcEEEEECCCCEEEEEe--CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--
Confidence                     1  12389999999999999876  55677776553310000000000000011111456888888766  


Q ss_pred             EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      .++-.... .|+.  +..++...+..+..     .+.-+.+.+..+.+.....|+.|..+.+.
T Consensus       208 ~fiYtT~~-~lkY--l~~Ge~~~i~~ld~-----~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  208 CFIYTTSN-HLKY--LVNGETGIIAHLDK-----PLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEEEE-TT-EEEE--EETTEEEEEEE-SS-------EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             EEEEEcCC-eEEE--EEcCCcceEEEcCC-----ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            33333333 6665  32333323333221     12224455666677777777777777664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.11  E-value=5e-05  Score=74.00  Aligned_cols=109  Identities=16%  Similarity=0.193  Sum_probs=82.2

Q ss_pred             EEEEEecCCCEEEEEeC----CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390          112 FDLCWIKEDTNILTASG----DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK  187 (512)
Q Consensus       112 ~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  187 (512)
                      +-..|+|...+++.++-    .|.|.|+- ++|++.+... ..-.+++++|+|.. ..|+.|-.-|.+.+|...+.+.-.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHH-HHHhhccccceeEEEecCCceeee
Confidence            33578998888887764    58899984 6777554333 22346779999986 788888888999999877543211


Q ss_pred             CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390          188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR  251 (512)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~  251 (512)
                                                 ....|..+|..+.|+++|..+++ +..-|.|.+|...
T Consensus        96 ---------------------------v~~th~a~i~~l~wS~~G~~l~t-~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   96 ---------------------------VVETHPAPIQGLDWSHDGTVLMT-LDNPGSVHLWRYD  131 (1416)
T ss_pred             ---------------------------eccCCCCCceeEEecCCCCeEEE-cCCCceeEEEEee
Confidence                                       33467889999999999999997 5578999999876

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.08  E-value=0.0037  Score=57.17  Aligned_cols=297  Identities=10%  Similarity=0.052  Sum_probs=122.9

Q ss_pred             ecCCCcE-EEEeeCCCcE--EEEECCCCCCccccccccccccceeccccCC-CcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 010390           61 TSKNSHI-FAVSDEDGYV--SLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCWIKEDTNILTASGDQTIKIWD  136 (512)
Q Consensus        61 ~s~~~~~-latg~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~i~iwd  136 (512)
                      |.+||+. |.++..||.-  .+-|+.+++              +.++..+. .......++|+++.|+-......|+-.|
T Consensus        43 ft~dG~kllF~s~~dg~~nly~lDL~t~~--------------i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vd  108 (386)
T PF14583_consen   43 FTDDGRKLLFASDFDGNRNLYLLDLATGE--------------ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVD  108 (386)
T ss_dssp             B-TTS-EEEEEE-TTSS-EEEEEETTT-E--------------EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEE
T ss_pred             cCCCCCEEEEEeccCCCcceEEEEcccCE--------------EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEE
Confidence            4788964 4455556654  444665543              33343332 2222466778888887666667888899


Q ss_pred             CCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc-cceeeeccccccccccccccccee
Q 010390          137 AEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA-ESFVFSSAVVKGAHLLSQSKRVSR  215 (512)
Q Consensus       137 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  215 (512)
                      +++.+....+......+-...|..+.....+.+..     +=. ........... ..+...........+.........
T Consensus       109 L~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e-----~~~-~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~  182 (386)
T PF14583_consen  109 LDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIE-----ISR-EDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV  182 (386)
T ss_dssp             TTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEE-----EEG-GG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred             CCcCcEEEEEECCcccccccceeeCCCccEEEEEE-----Eee-hhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence            99987766665555555555664322122333321     000 00000000000 000000000000000000111122


Q ss_pred             cccccccEEEEEEeecCCEEEEEeecCC-----eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEE
Q 010390          216 RKAASMSITSVLYLKDEVSIATASAVNS-----IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT  290 (512)
Q Consensus       216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  290 (512)
                      .......+.-+.|+|....++.-|- .|     .-+||-+++..........        ......+..=-|.+||..+.
T Consensus       183 v~~~~~wlgH~~fsP~dp~li~fCH-EGpw~~Vd~RiW~i~~dg~~~~~v~~--------~~~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  183 VFEDTDWLGHVQFSPTDPTLIMFCH-EGPWDLVDQRIWTINTDGSNVKKVHR--------RMEGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             EEEESS-EEEEEEETTEEEEEEEEE--S-TTTSS-SEEEEETTS---EESS-----------TTEEEEEEEE-TTSS-EE
T ss_pred             EEecCccccCcccCCCCCCEEEEec-cCCcceeceEEEEEEcCCCcceeeec--------CCCCcccccccccCCCCEEE
Confidence            2233456678889998777766553 33     1366666543322221111        11123345556788888665


Q ss_pred             EEe-----cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC----------------CEEEEec
Q 010390          291 ASC-----MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG----------------NAYVWQV  349 (512)
Q Consensus       291 ~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg----------------~i~iw~~  349 (512)
                      --+     .+..|.-+|+.+.+...+....      ....+..++||++++-=+.|.                .|+++++
T Consensus       254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~  327 (386)
T PF14583_consen  254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMP------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV  327 (386)
T ss_dssp             EEEEETTT--EEEEEE-TTT--EEEEEEE-------SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred             EEeecCCCCceEEEeeCCCCCCceEEEeCC------ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence            422     2335666776654332221111      233456678998886533332                3566777


Q ss_pred             CCCCCCCceecccc----------C-CeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          350 NKPQADPIKLKSHD----------G-EVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       350 ~~~~~~~~~~~~h~----------~-~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      ..+..  ..+..|.          . .=-...|+||+...|.++...|...||=++
T Consensus       328 ~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  328 EAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             TTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             ccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            65432  1121121          1 124578999996667777788877777543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.08  E-value=0.00092  Score=62.81  Aligned_cols=125  Identities=15%  Similarity=0.100  Sum_probs=78.3

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcc--------ccc---------c-------c------ccccccee
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSF--------ACH---------R-------E------NAEKARIS  102 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~--------~~~---------~-------~------~~~~~~~~  102 (512)
                      |..|+|   .++..-||+|...|.|.||.....+.-.        ...         .       .      .....+..
T Consensus         4 v~~vs~---a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~   80 (395)
T PF08596_consen    4 VTHVSF---APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT   80 (395)
T ss_dssp             EEEEEE---ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred             EEEEEe---cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence            556666   8888889999999999999865432211        000         0       0      01123344


Q ss_pred             ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec--ccC------cCCCEEEEEeeC----CC---CCeEE
Q 010390          103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA--LMG------HTGSIKSLCSHP----TN---SDILV  167 (512)
Q Consensus       103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~------h~~~v~~l~~~~----~~---~~~l~  167 (512)
                      .+....++|++++.| |=-+++.|..+|.+.|.|++....+..  +..      ....|+++.|.-    ++   .-.++
T Consensus        81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            445567999999998 555899999999999999987766543  111      334688888862    11   13688


Q ss_pred             EEeCCCcEEEEeCC
Q 010390          168 SGSRDGSFAIWDLR  181 (512)
Q Consensus       168 s~~~dg~i~vwd~~  181 (512)
                      +|...|.+.+|.+.
T Consensus       160 vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  160 VGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEETTSEEEEEEEE
T ss_pred             EEeCCCCEEEEEEe
Confidence            88999999999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.07  E-value=0.00026  Score=51.79  Aligned_cols=104  Identities=13%  Similarity=0.213  Sum_probs=73.8

Q ss_pred             cceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390           53 PLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT  131 (512)
Q Consensus        53 v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~  131 (512)
                      |.+++++.|..||. -|++|+.|..|+||+-+..               +..+. -.+.|++++-... ..++.+..+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---------------~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGT   64 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---------------VAEIT-ETDKVTSLCSLGG-GRFAYALANGT   64 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE---------------EEEEe-cccceEEEEEcCC-CEEEEEecCCE
Confidence            67889988877764 8999999999999985432               33333 3467888877655 67999999999


Q ss_pred             EEEEeCCCCeeeecccCcCCCEEEEEeeC---CCCCeEEEEeCCCcEE
Q 010390          132 IKIWDAEKKKCTGALMGHTGSIKSLCSHP---TNSDILVSGSRDGSFA  176 (512)
Q Consensus       132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~  176 (512)
                      |-+|+-  .+.+..++.. ..+.++.+..   ++...|++|-.+|.|-
T Consensus        65 VGvY~~--~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   65 VGVYDR--SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEeC--cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            999974  3334444432 3466666543   3445799999998774

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.04  E-value=0.00055  Score=64.97  Aligned_cols=190  Identities=20%  Similarity=0.169  Sum_probs=111.1

Q ss_pred             cccCCCcEEEEEEecCCCEEEEEe---CC-CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE--
Q 010390          104 WVAHQNAIFDLCWIKEDTNILTAS---GD-QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI--  177 (512)
Q Consensus       104 ~~~h~~~V~~l~~s~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v--  177 (512)
                      +..-...+..-+|+|+++.++...   .. ..+.++++++++....+. ..+.-..-+|+|++..++++...||...+  
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            333446777888999998876432   22 459999999886544433 22233456799999778888888886555  


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEE--eccCccc
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW--DTRNLKA  255 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw--d~~~~~~  255 (512)
                      .|+.......                            +....+.-..-.|+|+|+.++.+++..|.-.||  +.+....
T Consensus       267 ~dl~~~~~~~----------------------------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~  318 (425)
T COG0823         267 MDLDGKNLPR----------------------------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV  318 (425)
T ss_pred             EcCCCCccee----------------------------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence            4555444211                            111222233567899999999988777765544  5544433


Q ss_pred             eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC-Ce--EEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390          256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD-HR--IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA  332 (512)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  332 (512)
                      ..            .......-..-.|+|||++++..+.. |.  |.+.|+.....  ...+.....   .....+.+++
T Consensus       319 ~r------------iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~~~---~e~ps~~~ng  381 (425)
T COG0823         319 TR------------LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK--IRILTSTYL---NESPSWAPNG  381 (425)
T ss_pred             eE------------eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc--EEEcccccc---CCCCCcCCCC
Confidence            21            11111222267899999998877643 44  55555543322  222222111   1124677788


Q ss_pred             CEEEEec
Q 010390          333 SHILSGS  339 (512)
Q Consensus       333 ~~l~~g~  339 (512)
                      +.+...+
T Consensus       382 ~~i~~~s  388 (425)
T COG0823         382 RMIMFSS  388 (425)
T ss_pred             ceEEEec
Confidence            7775443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.04  E-value=2.2e-06  Score=80.54  Aligned_cols=206  Identities=17%  Similarity=0.244  Sum_probs=128.4

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeC-
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASG-  128 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~-  128 (512)
                      .-+.||++. +.-|..++++|..+|.|.+-.+....-.           -.....+|...+++++|++ |...||.|-. 
T Consensus        57 qy~kcva~~-y~~d~cIlavG~atG~I~l~s~r~~hdS-----------s~E~tp~~ar~Ct~lAwneLDtn~LAagldk  124 (783)
T KOG1008|consen   57 QYVKCVASF-YGNDRCILAVGSATGNISLLSVRHPHDS-----------SAEVTPGYARPCTSLAWNELDTNHLAAGLDK  124 (783)
T ss_pred             CCceeehhh-cCCchhhhhhccccCceEEeecCCcccc-----------cceecccccccccccccccccHHHHHhhhhh
Confidence            335566551 1334468999999999999887654321           0122356788999999999 6677777643 


Q ss_pred             ---CCcEEEEeCCCC--eee--ecccC-cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          129 ---DQTIKIWDAEKK--KCT--GALMG-HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       129 ---dg~i~iwd~~~~--~~~--~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                         |..+.|||+.++  .+.  ..+.+ -.....+++|..+. .++.+|.....+.++|++........           
T Consensus       125 hrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~s-----------  192 (783)
T KOG1008|consen  125 HRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSS-----------  192 (783)
T ss_pred             hcccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhh-----------
Confidence               677999999876  221  22222 33456688898554 88889988889999999843221110           


Q ss_pred             ccccccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEe-ccCccceecccCCCccccccccccccCee
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWD-TRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                       -....+..+...| ...+++. . .||.|.+|| .++-+........      ........+.
T Consensus       193 -----------------vnTk~vqG~tVdp~~~nY~cs-~-~dg~iAiwD~~rnienpl~~i~~------~~N~~~~~l~  247 (783)
T KOG1008|consen  193 -----------------VNTKYVQGITVDPFSPNYFCS-N-SDGDIAIWDTYRNIENPLQIILR------NENKKPKQLF  247 (783)
T ss_pred             -----------------hhhhhcccceecCCCCCceec-c-ccCceeeccchhhhccHHHHHhh------CCCCccccee
Confidence                             1122566777788 4555543 3 599999999 4443333221111      1111223588


Q ss_pred             EEEeCCCCC-EEEEEe-cCCeEEEEEccc
Q 010390          279 SLSQDSNGV-FLTASC-MDHRIYLYNVLQ  305 (512)
Q Consensus       279 ~~~~~~~~~-~l~~~~-~dg~i~i~d~~~  305 (512)
                      .++|.|... .+++.. ..++|++||+..
T Consensus       248 ~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  248 ALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eEEeccCCcchhhhhccCcceEEEecccc
Confidence            999998543 344444 558999999854

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.02  E-value=0.0013  Score=61.82  Aligned_cols=241  Identities=11%  Similarity=0.075  Sum_probs=119.4

Q ss_pred             CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC-Cccc---------------cceeeeccccccccccccccccee
Q 010390          152 SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK-SNCA---------------ESFVFSSAVVKGAHLLSQSKRVSR  215 (512)
Q Consensus       152 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~  215 (512)
                      .|+.+.|.++. ..|+.|...|.|.+|.....+... ....               ...+..........+.........
T Consensus         3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            58899999987 789999999999999876543322 0000               000000000000000111222334


Q ss_pred             cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC-----CCC---C
Q 010390          216 RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD-----SNG---V  287 (512)
Q Consensus       216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~---~  287 (512)
                      +....++|++++.+.- . +++.|+++|.+.|.|+|....+.......   ..........++++.|.     .|+   -
T Consensus        82 ~~~~~g~vtal~~S~i-G-Fvaigy~~G~l~viD~RGPavI~~~~i~~---~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDI-G-FVAIGYESGSLVVIDLRGPAVIYNENIRE---SFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             E---S-SEEEEEE-BT-S-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             eeccCCcEeEEecCCC-c-EEEEEecCCcEEEEECCCCeEEeeccccc---cccccccccCeeEEEEEEEecCCCcccce
Confidence            4555789999998733 3 44457799999999999887766532111   00112233446677765     333   4


Q ss_pred             EEEEEecCCeEEEEEccc-CCCCceEeeeec--eeceeEEEEE-ECCC---------------------CCEEEEecCCC
Q 010390          288 FLTASCMDHRIYLYNVLQ-LDKGPIQHFSGC--RIESFYVKSE-ICPN---------------------ASHILSGSSDG  342 (512)
Q Consensus       288 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~--~~~~~~~~~~-~s~~---------------------~~~l~~g~~dg  342 (512)
                      .|++|...|.+.+|.+.- ........+.+.  .....+..+. ++.+                     ..++++++ +.
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~  235 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ES  235 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SS
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-cc
Confidence            788999999999999852 222222122211  1112222222 2211                     12444444 56


Q ss_pred             CEEEEecCCCCCCCceeccccCCeEEEEeC-----CCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          343 NAYVWQVNKPQADPIKLKSHDGEVTAVNWC-----PNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       343 ~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      .++++...+.+.....+ ...-....+.+.     ..+ ..|++-..+|.|+++.+..-+.+..
T Consensus       236 ~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lkei~~  297 (395)
T PF08596_consen  236 DIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKEIKS  297 (395)
T ss_dssp             EEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--EEEE
T ss_pred             ceEEEeCCCCcccceee-ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchHhhc
Confidence            69999988766533333 221223334442     234 6788889999999999988665543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.00  E-value=0.0069  Score=54.78  Aligned_cols=248  Identities=12%  Similarity=0.146  Sum_probs=127.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      .++.|+.|..+| +.++++........+. +...|..+...++- +.|++-+ |+.+.++++..-...........    
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~----   77 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF----   77 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccc----
Confidence            578899999999 9999983332222222 22349999999876 5555554 49999999986554331110000    


Q ss_pred             ccccccccccccccceecccccccEEEEE--EeecCCEEEEEeecCCeEEEEeccCcccee-cccCCCcccccccccccc
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVL--YLKDEVSIATASAVNSIVKFWDTRNLKAQI-TQAWPHAESSSAKETRLH  275 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~  275 (512)
                               ...............+...+  -...+...+++. ....|.+|......... ...        ....-..
T Consensus        78 ---------~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~--------ke~~lp~  139 (275)
T PF00780_consen   78 ---------PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLL--------KEISLPD  139 (275)
T ss_pred             ---------cccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCccccccee--------EEEEcCC
Confidence                     00000000011112233333  112333333333 46688888877642111 000        1122235


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece--------eceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR--------IESFYVKSEICPNASHILSGSSDGNAYVW  347 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  347 (512)
                      .+..++|.  ++.++.|. .+...+.|+.+.....+.......        ....+..+.. +++.+|++.  |..-.+.
T Consensus       140 ~~~~i~~~--~~~i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv  213 (275)
T PF00780_consen  140 PPSSIAFL--GNKICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFV  213 (275)
T ss_pred             CcEEEEEe--CCEEEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEE
Confidence            68888888  45677775 445788888754443333222111        0111222222 345666654  3333344


Q ss_pred             ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          348 QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       348 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      |..........+.- ...+.++++..   .+|+..+.+ .|.||++.+++++++..
T Consensus       214 ~~~G~~~r~~~i~W-~~~p~~~~~~~---pyli~~~~~-~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  214 NKNGEPSRKSTIQW-SSAPQSVAYSS---PYLIAFSSN-SIEVRSLETGELVQTIP  264 (275)
T ss_pred             cCCCCcCcccEEEc-CCchhEEEEEC---CEEEEECCC-EEEEEECcCCcEEEEEE
Confidence            44332221123332 33566677643   366666655 49999999999888754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.96  E-value=0.019  Score=54.74  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=59.8

Q ss_pred             ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390          272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK  351 (512)
Q Consensus       272 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~  351 (512)
                      .....+.+.+++|+...|+.|+.||.|.+||......    ...  ......+.++|+|+|..+++|+..|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----LLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee----eee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            3446799999999999999999999999999754321    111  1123456689999999999999999999999864


Q ss_pred             C
Q 010390          352 P  352 (512)
Q Consensus       352 ~  352 (512)
                      .
T Consensus       331 s  331 (545)
T PF11768_consen  331 S  331 (545)
T ss_pred             C
Confidence            4

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.95  E-value=0.0023  Score=57.31  Aligned_cols=255  Identities=12%  Similarity=0.099  Sum_probs=134.3

Q ss_pred             cCCCcEEEEe----------eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC--C
Q 010390           62 SKNSHIFAVS----------DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG--D  129 (512)
Q Consensus        62 s~~~~~latg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~--d  129 (512)
                      |||++.++++          -..-.|.+||..+..+..+..-.  ..   .... .......++++.|+++++....  .
T Consensus        44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP--~k---~R~~-~~~~~~~~~ls~dgk~~~V~N~TPa  117 (342)
T PF06433_consen   44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP--PK---PRAQ-VVPYKNMFALSADGKFLYVQNFTPA  117 (342)
T ss_dssp             -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET--TS----B---BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred             CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC--Cc---chhe-ecccccceEEccCCcEEEEEccCCC
Confidence            8999988873          33446999999886543221100  00   0000 0012233577889998886543  5


Q ss_pred             CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390          130 QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ  209 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (512)
                      -.|.|-|+..++.+.++... +   |.-..|.++.-|.+-|.||.+.-..+............                 
T Consensus       118 ~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~-----------------  176 (342)
T PF06433_consen  118 TSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK-----------------  176 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE-----------------
T ss_pred             CeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc-----------------
Confidence            67999999999988877632 2   22233545567889999999999998844332211000                 


Q ss_pred             cccceecccccc-cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc-ccccccccCeeEEEeCCCCC
Q 010390          210 SKRVSRRKAASM-SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS-SAKETRLHGISSLSQDSNGV  287 (512)
Q Consensus       210 ~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~  287 (512)
                           .+..... .+..-++...+..++... .+|.|+-.|+..........+...... ....-..++-.-+++++...
T Consensus       177 -----~F~~~~dp~f~~~~~~~~~~~~~F~S-y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~  250 (342)
T PF06433_consen  177 -----VFDPDDDPLFEHPAYSRDGGRLYFVS-YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG  250 (342)
T ss_dssp             -----ESSTTTS-B-S--EEETTTTEEEEEB-TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred             -----ccCCCCcccccccceECCCCeEEEEe-cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence                 1111111 122223344444343323 688888888776654332211110000 00111223455678887666


Q ss_pred             EEEEEecC--------C--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEE-ecCCCCEEEEecCCCCC
Q 010390          288 FLTASCMD--------H--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILS-GSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       288 ~l~~~~~d--------g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~-g~~dg~i~iw~~~~~~~  354 (512)
                      .|++.-..        +  .|.++|+.+.  +.+..+...   ..+.+++.+.+.+ +|++ ...++.+.+||..+++.
T Consensus       251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~--krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTH--KRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             EEEEEEEE--TT-TTS-EEEEEEEETTTT--EEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred             eEEEEecCCCCCCccCCceEEEEEECCCC--eEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence            55554321        2  5777777553  333333321   2344678888765 4544 34578999999999865

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.93  E-value=0.0021  Score=62.46  Aligned_cols=71  Identities=11%  Similarity=0.023  Sum_probs=51.6

Q ss_pred             EEEEEECCCCCEEEEe-cCCCCEEEEecCCCCCCC-----------ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390          323 YVKSEICPNASHILSG-SSDGNAYVWQVNKPQADP-----------IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL  390 (512)
Q Consensus       323 ~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~-----------~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v  390 (512)
                      ...++++|||++++++ ..+.+|.|+|+.+.+...           ....- .......+|.++| ..+.|.--|..|..
T Consensus       323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~k  400 (635)
T PRK02888        323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVK  400 (635)
T ss_pred             ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEE
Confidence            3458999999998655 458999999998754311           11111 2234567899998 78888899999999


Q ss_pred             EeCCC
Q 010390          391 WSLEN  395 (512)
Q Consensus       391 wd~~~  395 (512)
                      ||+..
T Consensus       401 wn~~~  405 (635)
T PRK02888        401 WNIEA  405 (635)
T ss_pred             EehHH
Confidence            99986

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.91  E-value=0.0043  Score=57.48  Aligned_cols=223  Identities=15%  Similarity=0.188  Sum_probs=123.4

Q ss_pred             CcEEEEeCCCCeeeecccCc-CCCEEEEEe---eCC---CCCeEEEEeC----------CCcEEEEeCCCC-CCCCCccc
Q 010390          130 QTIKIWDAEKKKCTGALMGH-TGSIKSLCS---HPT---NSDILVSGSR----------DGSFAIWDLRCK-SSPKSNCA  191 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~~~~h-~~~v~~l~~---~~~---~~~~l~s~~~----------dg~i~vwd~~~~-~~~~~~~~  191 (512)
                      ..|++.|..+.+.+..+.-. ...+++++.   ..+   ...+|+.|..          .|.|.++++... .....   
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~---   78 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK---   78 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E---
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE---
Confidence            35788888887766555322 234555443   221   1356776653          288999998864 10000   


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc-ceecccCCCccccccc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK-AQITQAWPHAESSSAK  270 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~  270 (512)
                                         ..........++|++++-. ++ .++++  .++.|.+|++...+ .....          .
T Consensus        79 -------------------l~~i~~~~~~g~V~ai~~~-~~-~lv~~--~g~~l~v~~l~~~~~l~~~~----------~  125 (321)
T PF03178_consen   79 -------------------LKLIHSTEVKGPVTAICSF-NG-RLVVA--VGNKLYVYDLDNSKTLLKKA----------F  125 (321)
T ss_dssp             -------------------EEEEEEEEESS-EEEEEEE-TT-EEEEE--ETTEEEEEEEETTSSEEEEE----------E
T ss_pred             -------------------EEEEEEEeecCcceEhhhh-CC-EEEEe--ecCEEEEEEccCcccchhhh----------e
Confidence                               0001112346688888876 33 45543  37899999999877 22211          1


Q ss_pred             cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      ......+.++...  ++++++|.....+.++.... ....+..+........++++.+-++++.+++++.+|.+.++...
T Consensus       126 ~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~-~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  126 YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE-ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET-TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc-cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            1111235555544  56999999888888886644 22223333333334567778887666799999999999999886


Q ss_pred             CCC--------CCCceeccc-cCCeEEE---EeCC--CCCC-----eEEEEeCCCcEEEE
Q 010390          351 KPQ--------ADPIKLKSH-DGEVTAV---NWCP--NEAG-----KIVTSSDDYTVRLW  391 (512)
Q Consensus       351 ~~~--------~~~~~~~~h-~~~v~~v---~~~~--~~~~-----~l~s~~~dg~i~vw  391 (512)
                      ...        .......-| ...|+++   .+.|  .+..     .++-++.+|.|.+.
T Consensus       203 ~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  203 PEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            311        111111222 4567777   5555  2212     37888888888843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.90  E-value=0.007  Score=57.81  Aligned_cols=229  Identities=14%  Similarity=0.133  Sum_probs=113.3

Q ss_pred             ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE-eCC
Q 010390          103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW-DLR  181 (512)
Q Consensus       103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw-d~~  181 (512)
                      .+....-....+.++|+|++++.+ .||...|+.....+...     .+.-...+|.+.  +.+|+-...+.|.++ ++.
T Consensus        27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSR--NRYAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TS--SEEEEE-TTS-EEEEETTE
T ss_pred             cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecC--ccEEEEECCCeEEEEEcCc
Confidence            333445568899999999999985 57888888844433322     123445778884  567777778899996 343


Q ss_pred             CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390          182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~  261 (512)
                      ... .....                            ....+..+-.   |..++..+  ++.|.+||..+++.+.... 
T Consensus        99 ~~~-~k~i~----------------------------~~~~~~~If~---G~LL~~~~--~~~i~~yDw~~~~~i~~i~-  143 (443)
T PF04053_consen   99 NEV-VKSIK----------------------------LPFSVEKIFG---GNLLGVKS--SDFICFYDWETGKLIRRID-  143 (443)
T ss_dssp             E-T-T---------------------------------SS-EEEEE----SSSEEEEE--TTEEEEE-TTT--EEEEES-
T ss_pred             ccc-ceEEc----------------------------CCcccceEEc---CcEEEEEC--CCCEEEEEhhHcceeeEEe-
Confidence            222 11110                            0112333333   77777654  5689999999988765432 


Q ss_pred             CCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC------C---CCceEeeeeceeceeEEEEEECCCC
Q 010390          262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL------D---KGPIQHFSGCRIESFYVKSEICPNA  332 (512)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~---~~~~~~~~~~~~~~~~~~~~~s~~~  332 (512)
                                  ..+|..+.|++++.+++..+.+ .+.+++....      +   ...+....  .....+.+.+|..+ 
T Consensus       144 ------------v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d-  207 (443)
T PF04053_consen  144 ------------VSAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED-  207 (443)
T ss_dssp             ------------S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT-
T ss_pred             ------------cCCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE--EecceeEEEEEEcC-
Confidence                        1238899999999999988755 6677664321      0   00111111  11223444566554 


Q ss_pred             CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       333 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      -++.+.. . .++.  +-.+..  ..+..-+.++.=+.+.+.. +.+.....|+.|..+.+....
T Consensus       208 ~fiYtT~-~-~lkY--l~~Ge~--~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  208 CFIYTTS-N-HLKY--LVNGET--GIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             EEEEE-T-T-EEEE--EETTEE--EEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--HHH
T ss_pred             EEEEEcC-C-eEEE--EEcCCc--ceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEEEECHHH
Confidence            2333322 2 4444  222322  1222224556666677765 678888888888888776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.88  E-value=0.0033  Score=54.73  Aligned_cols=217  Identities=10%  Similarity=0.061  Sum_probs=108.7

Q ss_pred             cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390          145 ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT  224 (512)
Q Consensus       145 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  224 (512)
                      .+.+-...+..|+|.|+.+.++++....+.|...+.. ++.+...                         .+ ...+...
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-------------------------~l-~g~~D~E   68 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-------------------------PL-DGFGDYE   68 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-------------------------E--SS-SSEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-------------------------eC-CCCCCce
Confidence            4455556799999999875777777788888777764 3322111                         11 1235688


Q ss_pred             EEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc
Q 010390          225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL  304 (512)
Q Consensus       225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  304 (512)
                      .|++..++.++++ ...++.+.++++.........................++..++|++.++.|+++....-..+|.+.
T Consensus        69 gI~y~g~~~~vl~-~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~  147 (248)
T PF06977_consen   69 GITYLGNGRYVLS-EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN  147 (248)
T ss_dssp             EEEE-STTEEEEE-ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             eEEEECCCEEEEE-EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence            8999877766665 445889999988543211110000000000112345678999999998888888777666777765


Q ss_pred             cCC--CC-ceEeeeec----eeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceecc--c-----cCCeEEE
Q 010390          305 QLD--KG-PIQHFSGC----RIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLKS--H-----DGEVTAV  369 (512)
Q Consensus       305 ~~~--~~-~~~~~~~~----~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~--h-----~~~v~~v  369 (512)
                      ...  .. ........    .....+..++++|. +.+++....+..|.++|....-.....+..  |     -...-.|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGI  227 (248)
T PF06977_consen  148 GFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGI  227 (248)
T ss_dssp             STT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred             cccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEE
Confidence            311  11 11111111    11123556888886 556677777788888884432111112221  1     1257789


Q ss_pred             EeCCCCCCeEEEEeCCCcEEEE
Q 010390          370 NWCPNEAGKIVTSSDDYTVRLW  391 (512)
Q Consensus       370 ~~~~~~~~~l~s~~~dg~i~vw  391 (512)
                      +|.++| .+.+ .+.-+..+++
T Consensus       228 a~d~~G-~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  228 AFDPDG-NLYI-VSEPNLFYRF  247 (248)
T ss_dssp             EE-TT---EEE-EETTTEEEEE
T ss_pred             EECCCC-CEEE-EcCCceEEEe
Confidence            999988 4444 4455555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.88  E-value=0.011  Score=51.46  Aligned_cols=222  Identities=12%  Similarity=0.143  Sum_probs=112.0

Q ss_pred             EeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      ...+.|-..-+.+|+|   .|+. .++|+....+.|...+.+.. .           .....+.+ .+..-.|++..++.
T Consensus        14 ~~~l~g~~~e~SGLTy---~pd~~tLfaV~d~~~~i~els~~G~-v-----------lr~i~l~g-~~D~EgI~y~g~~~   77 (248)
T PF06977_consen   14 AKPLPGILDELSGLTY---NPDTGTLFAVQDEPGEIYELSLDGK-V-----------LRRIPLDG-FGDYEGITYLGNGR   77 (248)
T ss_dssp             EEE-TT--S-EEEEEE---ETTTTEEEEEETTTTEEEEEETT---E-----------EEEEE-SS--SSEEEEEE-STTE
T ss_pred             eeECCCccCCccccEE---cCCCCeEEEEECCCCEEEEEcCCCC-E-----------EEEEeCCC-CCCceeEEEECCCE
Confidence            3455565666889999   8864 57777888888888886532 1           11122333 35688888887787


Q ss_pred             EEEEEeCCCcEEEEeCCCCe------eeecc-----cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390          122 NILTASGDQTIKIWDAEKKK------CTGAL-----MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC  190 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~------~~~~~-----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  190 (512)
                      ++++.-.++.+.+.++....      ....+     ..++..+-.++|.+.+ +.|+.+-...-..+|.+......... 
T Consensus        78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~-  155 (248)
T PF06977_consen   78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDL-  155 (248)
T ss_dssp             EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS---
T ss_pred             EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccce-
Confidence            77766568999999884321      11111     1345678999999987 55555666666677766541100000 


Q ss_pred             ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390          191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                         ...            ...........-..+.+++++|....+++.+..+..|..+| .+++...........  ..+
T Consensus       156 ---~~~------------~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~--~gl  217 (248)
T PF06977_consen  156 ---FVS------------DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF--HGL  217 (248)
T ss_dssp             ---EEE------------E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG--GG-
T ss_pred             ---eec------------cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc--cCc
Confidence               000            00000001122345789999998877777777889999999 444433322111100  011


Q ss_pred             cccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390          271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLY  301 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  301 (512)
                      ...-.....|+++++|++.+++ .-+..++|
T Consensus       218 ~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  218 SKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             ccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            1122347789999999655554 45544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.87  E-value=0.00039  Score=66.75  Aligned_cols=162  Identities=14%  Similarity=0.137  Sum_probs=109.2

Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY  301 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  301 (512)
                      .+.--++...+++++. |+.-|.+++|+-..+.....          ...+....+....++++..+++.|+..|.|.++
T Consensus        35 ~v~lTc~dst~~~l~~-GsS~G~lyl~~R~~~~~~~~----------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~  103 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAM-GSSAGSVYLYNRHTGEMRKL----------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVF  103 (726)
T ss_pred             eEEEEEeecCCceEEE-ecccceEEEEecCchhhhcc----------cccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence            3444455667777777 66799999999877665432          122234456677888999999999999999999


Q ss_pred             EcccCCCCceEeeeece--eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC---CCCceeccccCCeEEEEeCCCCC
Q 010390          302 NVLQLDKGPIQHFSGCR--IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ---ADPIKLKSHDGEVTAVNWCPNEA  376 (512)
Q Consensus       302 d~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~  376 (512)
                      -+..........+....  +...|++++|++++..+++|...|.|..-.++...   .....+..-.+.|..+.....  
T Consensus       104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~--  181 (726)
T KOG3621|consen  104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS--  181 (726)
T ss_pred             hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccc--
Confidence            98774333333332222  35679999999999999999999999999887721   112233344678888887653  


Q ss_pred             CeEEEEeCCCcEEEEeCCCCcc
Q 010390          377 GKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       377 ~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      .+|++...  .-.+++++.++.
T Consensus       182 ~LLVStl~--r~~Lc~tE~eti  201 (726)
T KOG3621|consen  182 YLLVSTLT--RCILCQTEAETI  201 (726)
T ss_pred             eehHhhhh--hhheeecchhHH
Confidence            35555443  334566655543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.83  E-value=0.0015  Score=61.33  Aligned_cols=250  Identities=11%  Similarity=0.095  Sum_probs=124.8

Q ss_pred             ecCCCEEEEEe---------CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390          117 IKEDTNILTAS---------GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK  187 (512)
Q Consensus       117 s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  187 (512)
                      |||+++++...         ..+.+.|+|+++++....... ...+....|+|++ +.++-.. ++.|.+++..++....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g-~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDG-KYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSS-TEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCC-CeeEEEe-cCceEEEECCCCCeEE
Confidence            57777777632         246789999999876554443 5678889999998 6666665 5789999887653221


Q ss_pred             CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc
Q 010390          188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS  267 (512)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  267 (512)
                      .....    ...+..+....     +-. ..--..-..+-|+||++.|+..-.++..|..+.+........         
T Consensus        78 lT~dg----~~~i~nG~~dw-----vye-EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~---------  138 (353)
T PF00930_consen   78 LTTDG----EPGIYNGVPDW-----VYE-EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS---------  138 (353)
T ss_dssp             SES------TTTEEESB--H-----HHH-HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---------
T ss_pred             ecccc----ceeEEcCccce-----ecc-ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---------
Confidence            11100    00000000000     000 000112356889999999998887777777765543211100         


Q ss_pred             ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee-eceeceeEEEEEECCCCCEEEEe--cCC---
Q 010390          268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS-GCRIESFYVKSEICPNASHILSG--SSD---  341 (512)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g--~~d---  341 (512)
                           ....+..+.+-.-|.--.    .-.+.++|+.+.+...+.... .......+..+.|.++++.|+..  ..+   
T Consensus       139 -----~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~  209 (353)
T PF00930_consen  139 -----QYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNR  209 (353)
T ss_dssp             -----SS-EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTE
T ss_pred             -----cCCcccccccCCCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCE
Confidence                 000122333321121111    114667887654433222110 12335678889999999844332  222   


Q ss_pred             CCEEEEecCCCCCCCceeccccCCe---EEEEeC-CCCCCeEEEEeCCCcE--EEEeCCCCc
Q 010390          342 GNAYVWQVNKPQADPIKLKSHDGEV---TAVNWC-PNEAGKIVTSSDDYTV--RLWSLENSR  397 (512)
Q Consensus       342 g~i~iw~~~~~~~~~~~~~~h~~~v---~~v~~~-~~~~~~l~s~~~dg~i--~vwd~~~~~  397 (512)
                      ..+.++|..++...........+.|   ....|. +++..+|.....||--  .+.+...+.
T Consensus       210 ~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~  271 (353)
T PF00930_consen  210 LDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK  271 (353)
T ss_dssp             EEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred             EEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence            2366777766554322222222332   244554 6664666666677744  445555555

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.83  E-value=0.028  Score=54.33  Aligned_cols=252  Identities=12%  Similarity=0.042  Sum_probs=127.8

Q ss_pred             cEEEEEEecCCCEEEEE-eCCC----cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC----------Cc
Q 010390          110 AIFDLCWIKEDTNILTA-SGDQ----TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD----------GS  174 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----------g~  174 (512)
                      .+....++|++++||.+ +..|    .|++.|+.+++.+...-... .-..+.|.+++..++.+...+          ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467889999999844 3333    59999999997765321111 122389999884445554333          13


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc-ccc-EEEEEEeecCCEEEEEeecC---CeEEEEe
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA-SMS-ITSVLYLKDEVSIATASAVN---SIVKFWD  249 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-v~~~~~~~~~~~l~~~g~~d---g~i~iwd  249 (512)
                      |..|++.+.....                         ...+... ... ...+..+++++++++.....   ..+.+.|
T Consensus       204 v~~~~~gt~~~~d-------------------------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d  258 (414)
T PF02897_consen  204 VYRHKLGTPQSED-------------------------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLD  258 (414)
T ss_dssp             EEEEETTS-GGG--------------------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEE
T ss_pred             EEEEECCCChHhC-------------------------eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEe
Confidence            6677765443210                         0011111 112 56788899999987644333   3577778


Q ss_pred             ccCc---cceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe---cCCeEEEEEcccCCCCceE-eeeeceecee
Q 010390          250 TRNL---KAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC---MDHRIYLYNVLQLDKGPIQ-HFSGCRIESF  322 (512)
Q Consensus       250 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~  322 (512)
                      +...   .....          ........+....-+.++.+++...   ..+.|...++......... .+..+.....
T Consensus       259 ~~~~~~~~~~~~----------~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~  328 (414)
T PF02897_consen  259 LDDGGSPDAKPK----------LLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS  328 (414)
T ss_dssp             CCCTTTSS-SEE----------EEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred             ccccCCCcCCcE----------EEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee
Confidence            7764   11111          1122222233222222444444333   2367777777664432222 3333222223


Q ss_pred             EEEEEECCCCCEEE-EecCCC--CEEEEecC-CCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC---CCcEEEEeCCC
Q 010390          323 YVKSEICPNASHIL-SGSSDG--NAYVWQVN-KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD---DYTVRLWSLEN  395 (512)
Q Consensus       323 ~~~~~~s~~~~~l~-~g~~dg--~i~iw~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~---dg~i~vwd~~~  395 (512)
                      +..+.  ..+++|+ ....++  .|+++++. .... ......-.+.|..+...++++.+.++.+.   -+++..||+.+
T Consensus       329 l~~~~--~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~-~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t  405 (414)
T PF02897_consen  329 LEDVS--LFKDYLVLSYRENGSSRLRVYDLDDGKES-REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT  405 (414)
T ss_dssp             EEEEE--EETTEEEEEEEETTEEEEEEEETT-TEEE-EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEE--EECCEEEEEEEECCccEEEEEECCCCcEE-eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            33333  3344454 443443  48888888 3322 12222224456777766666455555442   36899999999


Q ss_pred             Ccccc
Q 010390          396 SRCSS  400 (512)
Q Consensus       396 ~~~~~  400 (512)
                      ++...
T Consensus       406 ~~~~~  410 (414)
T PF02897_consen  406 GELTL  410 (414)
T ss_dssp             TCEEE
T ss_pred             CCEEE
Confidence            87543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.75  E-value=0.0095  Score=58.60  Aligned_cols=26  Identities=12%  Similarity=0.210  Sum_probs=22.0

Q ss_pred             CCCEEEEecCCCCEEEEecCCCCCCC
Q 010390          331 NASHILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                      .+..|++++.||.|+.+|..+++...
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~lW  430 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKELW  430 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCceee
Confidence            45788889999999999999988743

The alignment model contains an 8-bladed beta-propeller.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.74  E-value=0.0077  Score=54.09  Aligned_cols=273  Identities=8%  Similarity=0.045  Sum_probs=132.9

Q ss_pred             CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----------CCcEEEEeCCCCeeee
Q 010390           75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----------DQTIKIWDAEKKKCTG  144 (512)
Q Consensus        75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~  144 (512)
                      +.+.|+|.++++.             +-.+..  +-.-.+..+|+++.+++++.          .-.|.+||..+-....
T Consensus        17 ~rv~viD~d~~k~-------------lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~   81 (342)
T PF06433_consen   17 SRVYVIDADSGKL-------------LGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG   81 (342)
T ss_dssp             EEEEEEETTTTEE-------------EEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred             ceEEEEECCCCcE-------------EEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc
Confidence            4788888776532             222221  12223567899999887543          3469999999987766


Q ss_pred             cccCcCC-CE------EEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390          145 ALMGHTG-SI------KSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR  215 (512)
Q Consensus       145 ~~~~h~~-~v------~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (512)
                      .+.-... ..      +.+.++.++ ++++..-.  -..|.|.|+...+.......                        
T Consensus        82 EI~iP~k~R~~~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------------------------  136 (342)
T PF06433_consen   82 EIEIPPKPRAQVVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDT------------------------  136 (342)
T ss_dssp             EEEETTS-B--BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEG------------------------
T ss_pred             eEecCCcchheecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecC------------------------
Confidence            5432211 11      122344444 33322211  12444555543332211111                        


Q ss_pred             cccccccEEEEEEeecC-CEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC-eeEEEeCCCCCEEEEEe
Q 010390          216 RKAASMSITSVLYLKDE-VSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG-ISSLSQDSNGVFLTASC  293 (512)
Q Consensus       216 ~~~~~~~v~~~~~~~~~-~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~  293 (512)
                             .-|....|.+ ..+.+.| .||.+.-..+............      .+.....+ +..-++...+..++--+
T Consensus       137 -------PGC~~iyP~~~~~F~~lC-~DGsl~~v~Ld~~Gk~~~~~t~------~F~~~~dp~f~~~~~~~~~~~~~F~S  202 (342)
T PF06433_consen  137 -------PGCWLIYPSGNRGFSMLC-GDGSLLTVTLDADGKEAQKSTK------VFDPDDDPLFEHPAYSRDGGRLYFVS  202 (342)
T ss_dssp             -------TSEEEEEEEETTEEEEEE-TTSCEEEEEETSTSSEEEEEEE------ESSTTTS-B-S--EEETTTTEEEEEB
T ss_pred             -------CCEEEEEecCCCceEEEe-cCCceEEEEECCCCCEeEeecc------ccCCCCcccccccceECCCCeEEEEe
Confidence                   1122222322 2333333 5888888888743222211000      11111112 22333444555555577


Q ss_pred             cCCeEEEEEcccCCCCceEeeeec----eec----eeEEEEEECCCCCEEEEec---C-----CC--CEEEEecCCCCCC
Q 010390          294 MDHRIYLYNVLQLDKGPIQHFSGC----RIE----SFYVKSEICPNASHILSGS---S-----DG--NAYVWQVNKPQAD  355 (512)
Q Consensus       294 ~dg~i~i~d~~~~~~~~~~~~~~~----~~~----~~~~~~~~s~~~~~l~~g~---~-----dg--~i~iw~~~~~~~~  355 (512)
                      .+|.|+-.|+............-.    ...    +-..-+++++..+.|++--   .     |+  .|-++|+.+.+..
T Consensus       203 y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv  282 (342)
T PF06433_consen  203 YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV  282 (342)
T ss_dssp             TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE
T ss_pred             cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE
Confidence            899999999865432222222110    000    0112266766555444321   1     22  2666677776653


Q ss_pred             CceeccccCCeEEEEeCCCCCCeEEEE-eCCCcEEEEeCCCCccccccc
Q 010390          356 PIKLKSHDGEVTAVNWCPNEAGKIVTS-SDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~  403 (512)
                       ..+. -..++.+|+.+.+..-+|++. ..++.|.+||..+|+.++...
T Consensus       283 -~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  283 -ARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             -EEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             -EEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence             3332 134677999998875566655 468999999999999877644

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.73  E-value=0.0052  Score=62.12  Aligned_cols=135  Identities=13%  Similarity=0.172  Sum_probs=90.0

Q ss_pred             CCCcEEEEECCCCCCccccccccccccceeccccCCCc-EEEEEEec-----CCCEEEEEeCCCcEEEEeCCCCe--eee
Q 010390           73 EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA-IFDLCWIK-----EDTNILTASGDQTIKIWDAEKKK--CTG  144 (512)
Q Consensus        73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~--~~~  144 (512)
                      ....|+-.|++.++             .+..|..|... |..++=..     +....+.|-.+..+..||.+-..  ++.
T Consensus       502 ~~~~ly~mDLe~GK-------------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~  568 (794)
T PF08553_consen  502 NPNKLYKMDLERGK-------------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD  568 (794)
T ss_pred             CCCceEEEecCCCc-------------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence            34567777777664             37778877654 55554221     23445677788889999987532  221


Q ss_pred             c-c--cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccc
Q 010390          145 A-L--MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM  221 (512)
Q Consensus       145 ~-~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (512)
                      . .  ........|++-..+|  +||.|+.+|.||+||--..+                           ....+.+-..
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~---------------------------AKT~lp~lG~  619 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKR---------------------------AKTALPGLGD  619 (794)
T ss_pred             ccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchh---------------------------hhhcCCCCCC
Confidence            1 1  1133456777766554  89999999999999943211                           1113345567


Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTR  251 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~  251 (512)
                      +|..|..+.||+++++++  +..|.++++.
T Consensus       620 pI~~iDvt~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  620 PIIGIDVTADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             CeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence            999999999999999876  7888888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00022  Score=67.56  Aligned_cols=98  Identities=15%  Similarity=0.185  Sum_probs=76.5

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEE-EEEEecCCCEEEEEe
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIF-DLCWIKEDTNILTAS  127 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~s~~~~~l~s~~  127 (512)
                      -..-...+.++-|+|.-.+||++..+|.|.+..++-              +.+-++.-|...++ +++|.|||+.||.|-
T Consensus        16 ~~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~--------------qRlwtip~p~~~v~~sL~W~~DGkllaVg~   81 (665)
T KOG4640|consen   16 VMSLPINIKRIEWNPKMDLIATRTEKGELLIHRLNW--------------QRLWTIPIPGENVTASLCWRPDGKLLAVGF   81 (665)
T ss_pred             hhccccceEEEEEcCccchhheeccCCcEEEEEecc--------------ceeEeccCCCCccceeeeecCCCCEEEEEe
Confidence            333445666777799999999999999999988762              23556665767777 999999999999999


Q ss_pred             CCCcEEEEeCCCCeeeecc-cCcCCCEEEEEeeC
Q 010390          128 GDQTIKIWDAEKKKCTGAL-MGHTGSIKSLCSHP  160 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~  160 (512)
                      .||+|++.|++++..+... ..-..+|.++.|.+
T Consensus        82 kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   82 KDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             cCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            9999999999998776663 22445788888864

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.67  E-value=0.0079  Score=55.12  Aligned_cols=226  Identities=12%  Similarity=0.057  Sum_probs=97.3

Q ss_pred             EEecCCCEEEEEeC-C--CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          115 CWIKEDTNILTASG-D--QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       115 ~~s~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      +|.+||+.|+.++. |  ..+.+.|+.+++..+.-.+.........++|++ +.++-...+..|+-.|+.+.+.....  
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy--  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLEERVVY--  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--EEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCcEEEEE--
Confidence            56778988776554 4  457777999988766544322223345667877 55554545568888888876432111  


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEe--ecCCEEEEEee---------------------cCCeEEEE
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL--KDEVSIATASA---------------------VNSIVKFW  248 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~g~---------------------~dg~i~iw  248 (512)
                                               ......+-...|.  .++..++-+-.                     -...|.-.
T Consensus       119 -------------------------~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i  173 (386)
T PF14583_consen  119 -------------------------EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI  173 (386)
T ss_dssp             -------------------------E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred             -------------------------ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence                                     1111122223332  22333221100                     11234444


Q ss_pred             eccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC-----eEEEEEcccCCCCceEeeeeceeceeE
Q 010390          249 DTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH-----RIYLYNVLQLDKGPIQHFSGCRIESFY  323 (512)
Q Consensus       249 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~  323 (512)
                      |+.+++...            .......+..+.++|...-+++-|.+|     .-+||-+.... .....+..+.....+
T Consensus       174 dl~tG~~~~------------v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~~~e~~  240 (386)
T PF14583_consen  174 DLKTGERKV------------VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRMEGESV  240 (386)
T ss_dssp             ETTT--EEE------------EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEE
T ss_pred             ECCCCceeE------------EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCCCCccc
Confidence            555544322            223345577888998766666655543     13566654322 222222222223334


Q ss_pred             EEEEECCCCCEEEE-----ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390          324 VKSEICPNASHILS-----GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD  385 (512)
Q Consensus       324 ~~~~~s~~~~~l~~-----g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  385 (512)
                      ..--|.|||..|.-     ++.+..|.-+|..+++..  .+ ........+--++|+ .+++-=+.|
T Consensus       241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~--~~-~~~p~~~H~~ss~Dg-~L~vGDG~d  303 (386)
T PF14583_consen  241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR--RL-MEMPWCSHFMSSPDG-KLFVGDGGD  303 (386)
T ss_dssp             EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE--EE-EEE-SEEEEEE-TTS-SEEEEEE--
T ss_pred             ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce--EE-EeCCceeeeEEcCCC-CEEEecCCC
Confidence            45578999987743     223445777777766442  22 112244456667887 555543444

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.66  E-value=0.003  Score=60.04  Aligned_cols=203  Identities=16%  Similarity=0.106  Sum_probs=112.3

Q ss_pred             cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      .+.+=|.. +.....+......+..-.|+|++..+....-..   ..+.++|+.++.......                 
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------  235 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------  235 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------
Confidence            34444433 444445544555677778999884433332222   358889998776543221                 


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeE--EEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIV--KFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                                 ..+.-..-.|+|||+.++.+...||..  .+.|+.......            +....+.-..=.|+||
T Consensus       236 -----------~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~------------Lt~~~gi~~~Ps~spd  292 (425)
T COG0823         236 -----------FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR------------LTNGFGINTSPSWSPD  292 (425)
T ss_pred             -----------cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee------------cccCCccccCccCCCC
Confidence                       123344567999999999988888864  555666555221            1111122235678999


Q ss_pred             CCEEEEEe-cCCe--EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC-CCC--EEEEecCCCCCCCcee
Q 010390          286 GVFLTASC-MDHR--IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-DGN--AYVWQVNKPQADPIKL  359 (512)
Q Consensus       286 ~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~--i~iw~~~~~~~~~~~~  359 (512)
                      |+.++-.+ ..|.  |.++|...... ...+.......    ...|+|||++|+..+. +|.  |.+.++.++.. . ..
T Consensus       293 G~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~----~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~-~~  365 (425)
T COG0823         293 GSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS----NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-I-RI  365 (425)
T ss_pred             CCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc----CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-E-EE
Confidence            99877654 4555  55555433222 11122221111    4689999999977664 344  66666655543 1 22


Q ss_pred             ccccCCeEEEEeCCCCCCeEEEE
Q 010390          360 KSHDGEVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       360 ~~h~~~v~~v~~~~~~~~~l~s~  382 (512)
                      ..+......-.|.+++ ..++..
T Consensus       366 lt~~~~~e~ps~~~ng-~~i~~~  387 (425)
T COG0823         366 LTSTYLNESPSWAPNG-RMIMFS  387 (425)
T ss_pred             ccccccCCCCCcCCCC-ceEEEe
Confidence            2233334455677777 444433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.027  Score=53.42  Aligned_cols=250  Identities=13%  Similarity=0.093  Sum_probs=152.6

Q ss_pred             cEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390          110 AIFDLCWIKEDTNILTAS-GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  188 (512)
                      ....+...+++..+.... ....+.+-+................-..++.++.+.+.++....+..|.+.|.........
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            455667777775554333 2224555554422222212211134456788888866777777778999999654433221


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee--cCCeEEEEeccCccceecccCCCccc
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA--VNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                      .                            .-......+++.++++.+.++..  .++.+.+.|..+.+......      
T Consensus       112 ~----------------------------~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~------  157 (381)
T COG3391         112 I----------------------------PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP------  157 (381)
T ss_pred             e----------------------------eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe------
Confidence            1                            11115678899999998888776  46889999988877765421      


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeee-eceeceeEEEEEECCCCCEEEEecCC---
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFS-GCRIESFYVKSEICPNASHILSGSSD---  341 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~d---  341 (512)
                          .+. .+ ..++++|+|..+++.. .++.|.+.|........ .... ..........+.++++|.++.+....   
T Consensus       158 ----vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~  230 (381)
T COG3391         158 ----VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS  230 (381)
T ss_pred             ----cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence                111 22 7899999999777665 78899999965432211 0000 01111223347899999976554433   


Q ss_pred             CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEE-eCCCcEEEEeCCCCccccc
Q 010390          342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTS-SDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       342 g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~  401 (512)
                      +.+...|..+..........-......+..+|++ ..+... +..+.+.+-|..+......
T Consensus       231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g-~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAG-KAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             ceEEEEeCCCceEEEeccccccCCCCceeECCCC-CEEEEEecCCCeEEEEeCCCCceeee
Confidence            5888888877654222111111146678999999 565555 5558899999888776654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.59  E-value=0.089  Score=52.11  Aligned_cols=230  Identities=10%  Similarity=0.034  Sum_probs=108.9

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG  144 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  144 (512)
                      +..|.+++.++.|.-.|..+++..-........  ...........-..+++  .+..++.++.|+.|.-.|..+|+.+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~--~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPD--DVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCc--ccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            456666777888888898887542211100000  00000000000011222  23467778889999999999999877


Q ss_pred             cccCc--C--CCEEE-EEeeCCCCCeEEEEe------CCCcEEEEeCCCCCCCCCccccceeee----cc----cccccc
Q 010390          145 ALMGH--T--GSIKS-LCSHPTNSDILVSGS------RDGSFAIWDLRCKSSPKSNCAESFVFS----SA----VVKGAH  205 (512)
Q Consensus       145 ~~~~h--~--~~v~~-l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~----~~~~~~  205 (512)
                      .....  .  ..+.+ -...  + ..++.+.      .+|.|..+|.++++.+-..........    ..    ...+..
T Consensus       145 ~~~~~~~~~~~~~tssP~v~--~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~  221 (527)
T TIGR03075       145 SKKNGDYKAGYTITAAPLVV--K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK  221 (527)
T ss_pred             ecccccccccccccCCcEEE--C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccC
Confidence            65421  1  11211 1111  2 3444443      268899999998886644322110000    00    000000


Q ss_pred             cccccccceecccccccE-EEEEEeecCCEEEEEeec----CC-----------eEEEEeccCccceecccCCCcccccc
Q 010390          206 LLSQSKRVSRRKAASMSI-TSVLYLKDEVSIATASAV----NS-----------IVKFWDTRNLKAQITQAWPHAESSSA  269 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~g~~----dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~  269 (512)
                      .. ..   .........+ ..+.+.+....++...++    ++           .|.-.|+++++....+...+...- .
T Consensus       222 tw-~~---~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~w-D  296 (527)
T TIGR03075       222 TW-PG---DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEW-D  296 (527)
T ss_pred             CC-CC---CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCc-c
Confidence            00 00   0001111122 234555555544442222    11           567778888888776543221100 0


Q ss_pred             ccccccCeeEEEeCCCCC---EEEEEecCCeEEEEEcccCC
Q 010390          270 KETRLHGISSLSQDSNGV---FLTASCMDHRIYLYNVLQLD  307 (512)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~  307 (512)
                      +... ....-+.+..+|+   .++.+..+|.+++.|-.+++
T Consensus       297 ~d~~-~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       297 YDGV-NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             ccCC-CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence            0000 1122233334665   77788999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.59  E-value=0.076  Score=50.80  Aligned_cols=63  Identities=16%  Similarity=0.351  Sum_probs=42.8

Q ss_pred             cCCCcEEEEeeCC----------C-cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           62 SKNSHIFAVSDED----------G-YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        62 s~~~~~latg~~d----------g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      +|.|..+|....+          . .|.||+.....              +..+.--.+.|.++.|+.+ ..|+.-..||
T Consensus        37 a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~l--------------l~~i~w~~~~iv~~~wt~~-e~LvvV~~dG  101 (410)
T PF04841_consen   37 APYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKL--------------LSSIPWDSGRIVGMGWTDD-EELVVVQSDG  101 (410)
T ss_pred             cCCCceEEEEecCcccccccCCCCcEEEEECCCCCE--------------eEEEEECCCCEEEEEECCC-CeEEEEEcCC
Confidence            6667666666433          2 48888876542              3333223389999999875 5566667899


Q ss_pred             cEEEEeCCC
Q 010390          131 TIKIWDAEK  139 (512)
Q Consensus       131 ~i~iwd~~~  139 (512)
                      .++++|+..
T Consensus       102 ~v~vy~~~G  110 (410)
T PF04841_consen  102 TVRVYDLFG  110 (410)
T ss_pred             EEEEEeCCC
Confidence            999999863

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>smart00320 WD40 WD40 repeats

Probab=97.59  E-value=0.00014  Score=42.52  Aligned_cols=36  Identities=25%  Similarity=0.529  Sum_probs=32.3

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWD  136 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd  136 (512)
                      ...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            455668889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.00051  Score=65.17  Aligned_cols=80  Identities=19%  Similarity=0.209  Sum_probs=70.4

Q ss_pred             CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEE-EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390          107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIK-SLCSHPTNSDILVSGSRDGSFAIWDLRCKSS  185 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  185 (512)
                      -...|.-+.|+|.-+.||.+..+|.|.+..++ .+.+.++.-|...++ +++|.|+| ++|+.|-.||+|++.|++.+..
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCc
Confidence            34578889999999999999999999999987 777888887777777 99999998 9999999999999999998876


Q ss_pred             CCC
Q 010390          186 PKS  188 (512)
Q Consensus       186 ~~~  188 (512)
                      ...
T Consensus        97 l~~   99 (665)
T KOG4640|consen   97 LVS   99 (665)
T ss_pred             eec
Confidence            553

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.51  E-value=0.028  Score=52.14  Aligned_cols=218  Identities=12%  Similarity=0.112  Sum_probs=91.2

Q ss_pred             CCCcEEEEee-CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC------CCcEEEE
Q 010390           63 KNSHIFAVSD-EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG------DQTIKIW  135 (512)
Q Consensus        63 ~~~~~latg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------dg~i~iw  135 (512)
                      .+.++|+..+ ..+.|.|+|+.+....-..++. .+...+.. +.--..-..+..-|+|+.++|+-.      -|-+.+.
T Consensus        85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv-Ie~~ev~~-k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll  162 (461)
T PF05694_consen   85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV-IEPEEVFE-KTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL  162 (461)
T ss_dssp             --S-EEEEEBTTT--EEEEE--S-TTS-EEEEE-E-HHHHHH-HH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred             ccCCcEEeeeeccCcEEEEECCCCCCCCceEee-eCHHHHHh-hcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence            3456777765 7889999999854221111110 11101110 001122333444578988887533      2558888


Q ss_pred             eCCCCeeeecccCcC---CCEEEEEeeCCCCCeEEEEe--------------------CCCcEEEEeCCCCCCCCCcccc
Q 010390          136 DAEKKKCTGALMGHT---GSIKSLCSHPTNSDILVSGS--------------------RDGSFAIWDLRCKSSPKSNCAE  192 (512)
Q Consensus       136 d~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~~--------------------~dg~i~vwd~~~~~~~~~~~~~  192 (512)
                      |-++.+.........   ..-..+-|.|.. +.++|..                    ...++.+||+.+.+.++.+...
T Consensus       163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg  241 (461)
T PF05694_consen  163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG  241 (461)
T ss_dssp             -TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred             cCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence            888777766654322   234566677866 7777765                    2368999999877654433211


Q ss_pred             ceeeecccccccccccccccceecccccccEEEEEEe--ecCCEEEEEeecCCeEEEEec-cCccceec--ccCCCc---
Q 010390          193 SFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL--KDEVSIATASAVNSIVKFWDT-RNLKAQIT--QAWPHA---  264 (512)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~g~~dg~i~iwd~-~~~~~~~~--~~~~~~---  264 (512)
                                               ........+.|.  |+...-++.+...++|..|-- ..++-...  ...+..   
T Consensus       242 -------------------------~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~  296 (461)
T PF05694_consen  242 -------------------------EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE  296 (461)
T ss_dssp             -------------------------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred             -------------------------CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence                                     111124445553  444444443434555555543 32221111  000000   


Q ss_pred             -----cccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCC
Q 010390          265 -----ESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDK  308 (512)
Q Consensus       265 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~  308 (512)
                           .....+..-..-|+.+.+|.|.++|++++ ..|.|+.||+.+...
T Consensus       297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred             cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence                 00001111124489999999999999888 689999999977543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.50  E-value=0.04  Score=51.04  Aligned_cols=186  Identities=15%  Similarity=0.198  Sum_probs=100.4

Q ss_pred             CCEEEEEeC----------CCcEEEEeCCCC-----ee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          120 DTNILTASG----------DQTIKIWDAEKK-----KC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC  182 (512)
Q Consensus       120 ~~~l~s~~~----------dg~i~iwd~~~~-----~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  182 (512)
                      ..+|+.|+.          .|.|.++++...     +.  +... ...++|++++-.. + . |+++. ++.|.+|++..
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~-~-~-lv~~~-g~~l~v~~l~~  116 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFN-G-R-LVVAV-GNKLYVYDLDN  116 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEET-T-E-EEEEE-TTEEEEEEEET
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhC-C-E-EEEee-cCEEEEEEccC
Confidence            467776654          288999999884     22  2222 3568899998772 3 4 44444 37999999986


Q ss_pred             CC-CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390          183 KS-SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       183 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~  261 (512)
                      .+ ....                          ........+.++...  +..+++ |.....+.++..+......... 
T Consensus       117 ~~~l~~~--------------------------~~~~~~~~i~sl~~~--~~~I~v-gD~~~sv~~~~~~~~~~~l~~v-  166 (321)
T PF03178_consen  117 SKTLLKK--------------------------AFYDSPFYITSLSVF--KNYILV-GDAMKSVSLLRYDEENNKLILV-  166 (321)
T ss_dssp             TSSEEEE--------------------------EEE-BSSSEEEEEEE--TTEEEE-EESSSSEEEEEEETTTE-EEEE-
T ss_pred             cccchhh--------------------------heecceEEEEEEecc--ccEEEE-EEcccCEEEEEEEccCCEEEEE-
Confidence            65 1110                          001112245555554  456665 5566677776544321111100 


Q ss_pred             CCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC-----CCC-ceEeeeeceeceeEEEE---EECCC-
Q 010390          262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL-----DKG-PIQHFSGCRIESFYVKS---EICPN-  331 (512)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~-~~~~~~~~~~~~~~~~~---~~s~~-  331 (512)
                             ........++++.+-.+++.++++..+|.+.++.....     ... .+...........++++   ++.|. 
T Consensus       167 -------a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~  239 (321)
T PF03178_consen  167 -------ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS  239 (321)
T ss_dssp             -------EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred             -------EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence                   12222345888888866679999999999999987532     112 23333333344455555   44451 


Q ss_pred             -C------CEEEEecCCCCEEEE
Q 010390          332 -A------SHILSGSSDGNAYVW  347 (512)
Q Consensus       332 -~------~~l~~g~~dg~i~iw  347 (512)
                       +      ..++.++.+|.|...
T Consensus       240 ~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  240 GSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CCCcccccceEEEEecCCEEEEE
Confidence             2      247777788888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.051  Score=51.56  Aligned_cols=202  Identities=13%  Similarity=0.131  Sum_probs=132.6

Q ss_pred             cceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC---
Q 010390           53 PLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---  128 (512)
Q Consensus        53 v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---  128 (512)
                      ...++.   ++++. ..++...++.|.+.|......             .... .-...-..+++++++..+..+..   
T Consensus        76 p~~i~v---~~~~~~vyv~~~~~~~v~vid~~~~~~-------------~~~~-~vG~~P~~~~~~~~~~~vYV~n~~~~  138 (381)
T COG3391          76 PAGVAV---NPAGNKVYVTTGDSNTVSVIDTATNTV-------------LGSI-PVGLGPVGLAVDPDGKYVYVANAGNG  138 (381)
T ss_pred             ccceee---CCCCCeEEEecCCCCeEEEEcCcccce-------------eeEe-eeccCCceEEECCCCCEEEEEecccC
Confidence            345666   77777 455555568999999655432             1111 11126678999999988876655   


Q ss_pred             CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      ++++.+.|..+++.+.....-..+ ..+++.|++...+++-..++.|.+.|........ ....                
T Consensus       139 ~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~----------------  200 (381)
T COG3391         139 NNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG----------------  200 (381)
T ss_pred             CceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc----------------
Confidence            688999999988888775443344 8899999995566666678999999966544331 1000                


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecC--CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG  286 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  286 (512)
                            ...........+.+.+++..+.+....+  +.+...|..+........         ..... ....+..+|+|
T Consensus       201 ------~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~---------~~~~~-~~~~v~~~p~g  264 (381)
T COG3391         201 ------SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL---------PVGSG-APRGVAVDPAG  264 (381)
T ss_pred             ------cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc---------ccccC-CCCceeECCCC
Confidence                  0112233456788999999877765444  588888888876554311         11111 35668899999


Q ss_pred             CEEEEEecC-CeEEEEEccc
Q 010390          287 VFLTASCMD-HRIYLYNVLQ  305 (512)
Q Consensus       287 ~~l~~~~~d-g~i~i~d~~~  305 (512)
                      ..+.+.... +.+.+-|...
T Consensus       265 ~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         265 KAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             CEEEEEecCCCeEEEEeCCC
Confidence            998888544 7888888644

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.44  E-value=0.084  Score=47.70  Aligned_cols=237  Identities=12%  Similarity=0.068  Sum_probs=122.6

Q ss_pred             CCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390           63 KNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC  142 (512)
Q Consensus        63 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  142 (512)
                      ..++.|+.|+.+| |.+++......            ....  .+...|..+...++-+.|++-+ |+.+.++++..-..
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~------------~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~   68 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSK------------PTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP   68 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcc------------ceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence            3578899999998 89999832211            0111  1223399999999777776554 59999999876543


Q ss_pred             eecc--------------cCcCCCEEEEE--eeCCCCCeEEEEeCCCcEEEEeCCCCCCCC-Cccccceeeecccccccc
Q 010390          143 TGAL--------------MGHTGSIKSLC--SHPTNSDILVSGSRDGSFAIWDLRCKSSPK-SNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       143 ~~~~--------------~~h~~~v~~l~--~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~  205 (512)
                      ....              ......+...+  -...+...|+.+ ....|.+|......... ..                
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~----------------  131 (275)
T PF00780_consen   69 VSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKL----------------  131 (275)
T ss_pred             ccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccce----------------
Confidence            3311              11223444444  112332344444 44589998887542211 00                


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc-cccccccccCeeEEEeCC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES-SSAKETRLHGISSLSQDS  284 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~  284 (512)
                              .....-...+.+++|.  ++.+++ |. .....+.|+.++............. .........++..+... 
T Consensus       132 --------~ke~~lp~~~~~i~~~--~~~i~v-~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-  198 (275)
T PF00780_consen  132 --------LKEISLPDPPSSIAFL--GNKICV-GT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-  198 (275)
T ss_pred             --------eEEEEcCCCcEEEEEe--CCEEEE-Ee-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-
Confidence                    0111223678889998  445555 42 5668889998665433221111100 00011112233344443 


Q ss_pred             CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      ++.+|++-  +..-.+.|....... ...+.-.   .....+++  ...+|++.+.++ |.||++.+++.
T Consensus       199 ~~e~Ll~~--~~~g~fv~~~G~~~r-~~~i~W~---~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~l  259 (275)
T PF00780_consen  199 DNEFLLCY--DNIGVFVNKNGEPSR-KSTIQWS---SAPQSVAY--SSPYLIAFSSNS-IEVRSLETGEL  259 (275)
T ss_pred             CceEEEEe--cceEEEEcCCCCcCc-ccEEEcC---CchhEEEE--ECCEEEEECCCE-EEEEECcCCcE
Confidence            34555543  444444554322111 1111111   12223444  345777766554 99999998865

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.43  E-value=0.012  Score=43.23  Aligned_cols=66  Identities=20%  Similarity=0.432  Sum_probs=50.1

Q ss_pred             EEEEEEec-CC---CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390          111 IFDLCWIK-ED---TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR  181 (512)
Q Consensus       111 V~~l~~s~-~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  181 (512)
                      |++|++.. ++   +.|+.|+.|..|+||+  ..+.+..+.. .+.|++++-...  ..|+.+-.+|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCc
Confidence            66777765 32   5799999999999997  3466666663 457888876654  679999999999998753

>smart00320 WD40 WD40 repeats

Probab=97.43  E-value=0.00036  Score=40.66  Aligned_cols=39  Identities=36%  Similarity=0.665  Sum_probs=33.4

Q ss_pred             CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          140 KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       140 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      +++...+..|...|.++.|.+.+ .++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            34556677788999999999987 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.40  E-value=0.12  Score=48.69  Aligned_cols=94  Identities=13%  Similarity=0.120  Sum_probs=60.2

Q ss_pred             cCCCcEEEEeeCCCcEEE---EECCCCCCccccccccccccceeccccC-CCcEEEEEEec-----------CCCEEEEE
Q 010390           62 SKNSHIFAVSDEDGYVSL---FDSRRKLPSFACHRENAEKARISDWVAH-QNAIFDLCWIK-----------EDTNILTA  126 (512)
Q Consensus        62 s~~~~~latg~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~s~-----------~~~~l~s~  126 (512)
                      +|++++||.+..+..+.+   |+..........+    ...-...+..- .+.|+++.|-|           |...++.|
T Consensus        10 s~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~----~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen   10 SPDGDLLAIARGQRLVILTSKWDSSRKGENENTY----SISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             cCCCCEEEEEcCCEEEEEEeeccccccCCCCCeE----EEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            999999999987777666   6442221100000    00001111111 15788888766           24678899


Q ss_pred             eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeC
Q 010390          127 SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHP  160 (512)
Q Consensus       127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~  160 (512)
                      ..+|.|++|.. +|..+..-.-|..+|..|.+..
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            99999999984 7777666666889999998753

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.35  E-value=0.0045  Score=62.77  Aligned_cols=103  Identities=18%  Similarity=0.344  Sum_probs=77.1

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      -+..+|.|+..|.|...|......            +...-..-.++|++++|+.+|..++.|-.+|.|.+||...++..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~------------~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l  165 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLG------------PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL  165 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccc------------hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence            456789999999999998765311            11222234689999999999999999999999999999999998


Q ss_pred             ecccCcCCCEEEEE---eeCCCCCeEEEEeCCCcEEEEeCC
Q 010390          144 GALMGHTGSIKSLC---SHPTNSDILVSGSRDGSFAIWDLR  181 (512)
Q Consensus       144 ~~~~~h~~~v~~l~---~~~~~~~~l~s~~~dg~i~vwd~~  181 (512)
                      +.+..|..+++++-   +..++ ..++++...|.  +|.+.
T Consensus       166 ~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  166 KVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eeeeecCCccceEEEEEEeCCC-cEEEEccCCCc--eEEEE
Confidence            88877766665554   34444 56888777776  66654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.31  E-value=0.0055  Score=62.00  Aligned_cols=149  Identities=9%  Similarity=0.029  Sum_probs=91.3

Q ss_pred             cCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc-CeeEEEeCC-----CCCEEEEEecCCeEEEEEcc
Q 010390          231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH-GISSLSQDS-----NGVFLTASCMDHRIYLYNVL  304 (512)
Q Consensus       231 ~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~  304 (512)
                      +...++........|+-.|+..++.+..-           ..+.. +|..++-..     +....++|-.++.+..||.+
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW-----------~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR  560 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEW-----------KVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR  560 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEe-----------ecCCCcceeEecccccccccCCCceEEEECCCceEEeccC
Confidence            33444443345578888899988877532           22222 244433321     13356677789999999987


Q ss_pred             cCCCCceE-eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe
Q 010390          305 QLDKGPIQ-HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       305 ~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~  383 (512)
                      -.....+. ............|++-+.+| +||+|+.+|.||+||--. ......+.+-..+|.+|..+.|| ++|++.+
T Consensus       561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc  637 (794)
T PF08553_consen  561 LSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPIIGIDVTADG-KWILATC  637 (794)
T ss_pred             CCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCCCCCCCeeEEEecCCC-cEEEEee
Confidence            54322221 11111222334556555554 789999999999999543 33345566778999999999999 5655555


Q ss_pred             CCCcEEEEeCC
Q 010390          384 DDYTVRLWSLE  394 (512)
Q Consensus       384 ~dg~i~vwd~~  394 (512)
                      . ..|.+++..
T Consensus       638 ~-tyLlLi~t~  647 (794)
T PF08553_consen  638 K-TYLLLIDTL  647 (794)
T ss_pred             c-ceEEEEEEe
Confidence            4 457777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.27  E-value=0.019  Score=49.50  Aligned_cols=199  Identities=16%  Similarity=0.201  Sum_probs=110.3

Q ss_pred             ecCCCcEEEEee-----CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC------
Q 010390           61 TSKNSHIFAVSD-----EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD------  129 (512)
Q Consensus        61 ~s~~~~~latg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d------  129 (512)
                      |||||.+|...-     ..|.|-|||...+.            ..+.++..|.-.-..+.|.+||+.|+.+...      
T Consensus       121 fs~dG~~LYATEndfd~~rGViGvYd~r~~f------------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpd  188 (366)
T COG3490         121 FSPDGRLLYATENDFDPNRGVIGVYDAREGF------------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPD  188 (366)
T ss_pred             cCCCCcEEEeecCCCCCCCceEEEEeccccc------------ceecccccCCcCcceeEEecCCcEEEEeCCceecccc
Confidence            599999988763     34779999987542            4477788888888999999999999876430      


Q ss_pred             ------------CcEEEEeCCCCeeeecc--c--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          130 ------------QTIKIWDAEKKKCTGAL--M--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       130 ------------g~i~iwd~~~~~~~~~~--~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                                  -++.+.|..+|+.+...  .  .+.-.|..++.-+++ ..++.+-..|.       .......     
T Consensus       189 fgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~-------~~d~ppL-----  255 (366)
T COG3490         189 FGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGP-------RNDLPPL-----  255 (366)
T ss_pred             cCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCC-------CccCCcc-----
Confidence                        12233343444433221  1  233345556665554 33333322211       0000000     


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR  273 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  273 (512)
                         ...+.++..+................|-+++.+.+...++.++-..+...+||..++........+           
T Consensus       256 ---vg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~-----------  321 (366)
T COG3490         256 ---VGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP-----------  321 (366)
T ss_pred             ---eeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-----------
Confidence               000000111111111111223344578888988877777777766778899999999876542211           


Q ss_pred             ccCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 010390          274 LHGISSLSQDSNGVFLTASCMDHRIYLYN  302 (512)
Q Consensus       274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  302 (512)
                        ....++.  ...-+++.+.+|.+..+.
T Consensus       322 --daaGva~--~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         322 --DAAGVAA--AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             --cccccee--ccCceEEecCCceEEecc
Confidence              1222333  333466677788888775

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.15  E-value=0.27  Score=47.52  Aligned_cols=117  Identities=11%  Similarity=0.097  Sum_probs=67.6

Q ss_pred             cceEEEEEecCCCcEEEEe-eCCC----cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           53 PLAVSFCKTSKNSHIFAVS-DEDG----YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      ...+....+||||++||.+ +..|    .|+++|+++++...            ..+..  ..-..+.|.++++.|+...
T Consensus       123 ~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~------------d~i~~--~~~~~~~W~~d~~~~~y~~  188 (414)
T PF02897_consen  123 YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP------------DGIEN--PKFSSVSWSDDGKGFFYTR  188 (414)
T ss_dssp             -EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE------------EEEEE--EESEEEEECTTSSEEEEEE
T ss_pred             eEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC------------Ccccc--cccceEEEeCCCCEEEEEE
Confidence            4555566679999999976 3333    49999998874310            01111  1112399999988887554


Q ss_pred             CCC-----------cEEEEeCCCCeee--ecccCcCCC--EEEEEeeCCCCCeEEEEeCCC---cEEEEeCCCC
Q 010390          128 GDQ-----------TIKIWDAEKKKCT--GALMGHTGS--IKSLCSHPTNSDILVSGSRDG---SFAIWDLRCK  183 (512)
Q Consensus       128 ~dg-----------~i~iwd~~~~~~~--~~~~~h~~~--v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~  183 (512)
                      .+.           .|+.|.+.+...-  ..+......  ...+..++++..+++......   .+.+.|+...
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  189 FDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             CSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             eCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            333           3788888776432  333333322  567888988844444444433   4677777653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.11  E-value=0.14  Score=43.67  Aligned_cols=106  Identities=10%  Similarity=0.039  Sum_probs=71.1

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG  144 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  144 (512)
                      ..+++.|+..+.+.--|.+++..-            -.  .--...|.+-+.- -|++++.|...|.+++.+.++|+...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~------------We--~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w   87 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLI------------WE--AILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIW   87 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEE------------ee--hhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhee
Confidence            356777777887777777766321            00  1112333333322 47789999999999999999998877


Q ss_pred             cccCcCCCEEE-EEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390          145 ALMGHTGSIKS-LCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK  187 (512)
Q Consensus       145 ~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  187 (512)
                      .+.... .|.+ ....+++ .++..|+.|++....|.++.....
T Consensus        88 ~f~~~~-~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   88 NFVILE-TVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             eeeehh-hhccceEEcCCC-ceEEEecCCCcEEEecccccceEE
Confidence            765332 3322 2344555 899999999999999998765443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.099  Score=49.30  Aligned_cols=144  Identities=16%  Similarity=0.188  Sum_probs=90.6

Q ss_pred             CCCcEEEE-eeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC--E-----EEEEeCCCcEEE
Q 010390           63 KNSHIFAV-SDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT--N-----ILTASGDQTIKI  134 (512)
Q Consensus        63 ~~~~~lat-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~--~-----l~s~~~dg~i~i  134 (512)
                      .+.++|.. +.....++--|++.++             .+..++-|.. |+-+.+.|+.+  .     -+.|-.|..|.-
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GK-------------IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfr  408 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGK-------------IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFR  408 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccce-------------eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEE
Confidence            34444333 4444455556666553             3677777766 77778887543  2     234667888999


Q ss_pred             EeCCCC-e-eeecccCcC----CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          135 WDAEKK-K-CTGALMGHT----GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       135 wd~~~~-~-~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      ||.+-. . .+...++|.    ....|.+-..  .-+++.|+.+|.|++||-- +...+                     
T Consensus       409 iDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri-~~~AK---------------------  464 (644)
T KOG2395|consen  409 IDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRI-GRRAK---------------------  464 (644)
T ss_pred             ecccccCcceeeeeeccccccccccceeeecC--CceEEEeecCCcEEeehhh-hhhhh---------------------
Confidence            998632 1 122222222    2344544443  3589999999999999963 22111                     


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR  251 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~  251 (512)
                           ..+.+...+|..|..+.+|+++++++  +..+.+.++.
T Consensus       465 -----TAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~  500 (644)
T KOG2395|consen  465 -----TALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL  500 (644)
T ss_pred             -----hcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence                 13445667899999999999999865  7778777765

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.04  E-value=0.12  Score=47.03  Aligned_cols=200  Identities=9%  Similarity=0.034  Sum_probs=108.2

Q ss_pred             EeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEE
Q 010390          157 CSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIA  236 (512)
Q Consensus       157 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  236 (512)
                      .|.++...++.+--..+.|.-|+..++....                             ......+.++.....+..|+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-----------------------------~~~p~~~~~~~~~d~~g~Lv   81 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-----------------------------FPSPGGFSSGALIDAGGRLI   81 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-----------------------------EECCCCcccceeecCCCeEE
Confidence            4666664466666667778888776443211                             11223445555555555666


Q ss_pred             EEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec-----------CCeEEEEEccc
Q 010390          237 TASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM-----------DHRIYLYNVLQ  305 (512)
Q Consensus       237 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~  305 (512)
                      ++   +..+.+++.+++.........      .........+.....|+|.+.+....           -|.++.+|.. 
T Consensus        82 ~~---~~g~~~~~~~~~~~~t~~~~~------~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-  151 (307)
T COG3386          82 AC---EHGVRLLDPDTGGKITLLAEP------EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-  151 (307)
T ss_pred             EE---ccccEEEeccCCceeEEeccc------cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-
Confidence            53   445677777544442111110      11122244667888889887665444           1334444421 


Q ss_pred             CCCCceEeeeeceeceeEEEEEECCCCCEEEEecC-CCCEEEEecCC--CC----CCCceeccccCCeEEEEeCCCCCCe
Q 010390          306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-DGNAYVWQVNK--PQ----ADPIKLKSHDGEVTAVNWCPNEAGK  378 (512)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~--~~----~~~~~~~~h~~~v~~v~~~~~~~~~  378 (512)
                        .........+  -.....++||||++.|+.+.. .+.|+-|++..  ..    ..........+..-.++...+| .+
T Consensus       152 --g~~~~l~~~~--~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~l  226 (307)
T COG3386         152 --GGVVRLLDDD--LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NL  226 (307)
T ss_pred             --CCEEEeecCc--EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CE
Confidence              1122222221  122345899999988766654 47788887763  11    1111222234566667777777 56


Q ss_pred             EEEEeCCC-cEEEEeCCCCccccc
Q 010390          379 IVTSSDDY-TVRLWSLENSRCSSM  401 (512)
Q Consensus       379 l~s~~~dg-~i~vwd~~~~~~~~~  401 (512)
                      .+++..+| .|.+|+.+ |+.+..
T Consensus       227 w~~a~~~g~~v~~~~pd-G~l~~~  249 (307)
T COG3386         227 WVAAVWGGGRVVRFNPD-GKLLGE  249 (307)
T ss_pred             EEecccCCceEEEECCC-CcEEEE
Confidence            65554444 89999998 666554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.03  E-value=0.0018  Score=53.75  Aligned_cols=140  Identities=14%  Similarity=0.115  Sum_probs=74.1

Q ss_pred             eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece
Q 010390          239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR  318 (512)
Q Consensus       239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  318 (512)
                      .+.+|.|.-++++.-+.....          ...+...   ...-.-+.-+++|+.+|.|.+|+......  ........
T Consensus        36 ~sa~~~v~~~~~~k~k~s~rs----------e~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~--~~d~~~s~  100 (238)
T KOG2444|consen   36 TSADGLVRERKVRKHKESCRS----------ERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA--HSDRVCSG  100 (238)
T ss_pred             ccCCcccccchhhhhhhhhhh----------hhhhhcc---eeecccCceEEeecccceEEEecCCccch--HHHhhhcc
Confidence            346888888887754433221          1111111   12222355799999999999999752111  11111111


Q ss_pred             eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc-CCeEEEEeCCCCCCeEEEE--eCCCcEEEEeCCC
Q 010390          319 IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD-GEVTAVNWCPNEAGKIVTS--SDDYTVRLWSLEN  395 (512)
Q Consensus       319 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~--~~dg~i~vwd~~~  395 (512)
                      .+.....+.--.++.+.++++.||.|+.|++.-.+. ......|. .++.....+..+ ..++.+  |.|..++.|++..
T Consensus       101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence            112122233334566889999999999999876654 23444455 333333333333 344444  5555555555543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.16  Score=44.35  Aligned_cols=178  Identities=11%  Similarity=0.051  Sum_probs=101.4

Q ss_pred             ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      +.+-...|.++.|+|+. +.|++......-.+|=..+++.+......                          .-.....
T Consensus        81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~--------------------------g~~DpE~  133 (316)
T COG3204          81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLT--------------------------GFSDPET  133 (316)
T ss_pred             cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEeccc--------------------------ccCChhH
Confidence            44555669999999998 66666666666666654445443322111                          1224556


Q ss_pred             EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                      +.|..++.+.++ -..++.+.++.+.............- +.........+...++|+|....|+.+-.-+-+.||.+..
T Consensus       134 Ieyig~n~fvi~-dER~~~l~~~~vd~~t~~~~~~~~~i-~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~  211 (316)
T COG3204         134 IEYIGGNQFVIV-DERDRALYLFTVDADTTVISAKVQKI-PLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ  211 (316)
T ss_pred             eEEecCCEEEEE-ehhcceEEEEEEcCCccEEeccceEE-eccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence            777777766665 55778888887765543332221100 0001222256788999999999999998877777777653


Q ss_pred             CCCCceEeee-ece-----eceeEEEEEECCC-CCEEEEecCCCCEEEEecCCC
Q 010390          306 LDKGPIQHFS-GCR-----IESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       306 ~~~~~~~~~~-~~~-----~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~  352 (512)
                      .......... ...     .-..+..+.|++. +.+|+-+.+++.+.-.|....
T Consensus       212 ~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         212 SPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             CCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            3211111110 000     0112345667764 556666666777776666543

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.99  E-value=0.21  Score=50.09  Aligned_cols=156  Identities=20%  Similarity=0.168  Sum_probs=78.0

Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY  301 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  301 (512)
                      ....-.|+|+|..+.+....+..+++.+-.....+..........  .. .....|..+.|+|||..++... +|.|++-
T Consensus       398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~--~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va  473 (591)
T PRK13616        398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV--AS-RVPGPISELQLSRDGVRAAMII-GGKVYLA  473 (591)
T ss_pred             CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh--hh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence            367778999988777654211223333221111111000000000  01 2345699999999999888765 5788774


Q ss_pred             EcccCCCCceEe-----eeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc--ccCCeEEEEeCCC
Q 010390          302 NVLQLDKGPIQH-----FSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS--HDGEVTAVNWCPN  374 (512)
Q Consensus       302 d~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~v~~~~~  374 (512)
                      -+..........     +. .........+.|..++.++ ++..++...+|.+.-.......+..  ....+.+|+=++.
T Consensus       474 ~Vvr~~~G~~~l~~~~~l~-~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        474 VVEQTEDGQYALTNPREVG-PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS  551 (591)
T ss_pred             EEEeCCCCceeecccEEee-cccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence            433322222111     11 1112224668899999865 4444444445544322221112122  2567777877762


Q ss_pred             CCCeEEEEeCCC
Q 010390          375 EAGKIVTSSDDY  386 (512)
Q Consensus       375 ~~~~l~s~~~dg  386 (512)
                         .++....+|
T Consensus       552 ---~iyv~~~~g  560 (591)
T PRK13616        552 ---TVYVTDARA  560 (591)
T ss_pred             ---eEEEEcCCc
Confidence               344555566

>PRK10115 protease 2; Provisional

Probab=96.96  E-value=0.59  Score=48.17  Aligned_cols=73  Identities=8%  Similarity=-0.005  Sum_probs=46.5

Q ss_pred             CcEEEEEEecCCCEEEEEeC-----CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC-----CcEEEE
Q 010390          109 NAIFDLCWIKEDTNILTASG-----DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD-----GSFAIW  178 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vw  178 (512)
                      -.+..+.|+||+++|+.+..     ...|++-|+.+++.+.......  -..++|.+++..++++...+     ..|..+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            45777899999999885432     2458899998886432222121  14589999885555554432     356667


Q ss_pred             eCCCC
Q 010390          179 DLRCK  183 (512)
Q Consensus       179 d~~~~  183 (512)
                      ++.++
T Consensus       205 ~lgt~  209 (686)
T PRK10115        205 TIGTP  209 (686)
T ss_pred             ECCCC
Confidence            77655

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.95  E-value=0.14  Score=51.18  Aligned_cols=102  Identities=8%  Similarity=0.027  Sum_probs=59.7

Q ss_pred             CcceEEEEEecCCCcEEEEee------CCC--cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           52 PPLAVSFCKTSKNSHIFAVSD------EDG--YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      .+.+.+.   ||||+.+|..-      .|+  .|.+++....            ...+  ..+  ...+.-.|+|+|+.|
T Consensus       351 ~vsspai---SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~------------~~~l--t~g--~~~t~PsWspDG~~l  411 (591)
T PRK13616        351 NITSAAL---SRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV------------AVQV--LEG--HSLTRPSWSLDADAV  411 (591)
T ss_pred             CcccceE---CCCCCEEEEEEeecCCCCCcceEEEEEeCCCc------------ceee--ecC--CCCCCceECCCCCce
Confidence            3455556   99999887765      243  4444454221            0111  122  237888999998888


Q ss_pred             EEEeCC------------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE
Q 010390          124 LTASGD------------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI  177 (512)
Q Consensus       124 ~s~~~d------------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  177 (512)
                      ++....            +.+.+.++..++...   ...+.|..+.|+|+| ..++... +|.|.+
T Consensus       412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v~V  472 (591)
T PRK13616        412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDG-VRAAMII-GGKVYL  472 (591)
T ss_pred             EEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEEEE
Confidence            776432            233333444443322   235679999999999 5444443 467766

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.91  E-value=0.37  Score=45.03  Aligned_cols=231  Identities=11%  Similarity=0.120  Sum_probs=95.6

Q ss_pred             CCCEEEEEe-CCCcEEEEeCCCC----eeeecccC---cC----CCEEEEEeeCCCCCeEEEEeCC------CcEEEEeC
Q 010390          119 EDTNILTAS-GDQTIKIWDAEKK----KCTGALMG---HT----GSIKSLCSHPTNSDILVSGSRD------GSFAIWDL  180 (512)
Q Consensus       119 ~~~~l~s~~-~dg~i~iwd~~~~----~~~~~~~~---h~----~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~  180 (512)
                      +.++|+..+ ..+.|+|.|+.+.    +..+.+..   +.    ..-..+..-|++ .+++++-.|      |.+.+.|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcC
Confidence            456777655 6788999998743    33333322   11    122334445666 677766322      45666665


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe-------------------ec
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS-------------------AV  241 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g-------------------~~  241 (512)
                      ++.+......                        .-......-..+-|.|..+.++++.                   ..
T Consensus       165 ~tf~v~g~We------------------------~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~y  220 (461)
T PF05694_consen  165 ETFEVKGRWE------------------------KDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKY  220 (461)
T ss_dssp             TT--EEEE--------------------------SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S
T ss_pred             ccccccceec------------------------cCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccc
Confidence            5432211100                        0011122345566667666666542                   13


Q ss_pred             CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC--CCCCEEEEEe-cCCeEEEEEc-ccCCC--CceEeee
Q 010390          242 NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD--SNGVFLTASC-MDHRIYLYNV-LQLDK--GPIQHFS  315 (512)
Q Consensus       242 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~-~dg~i~i~d~-~~~~~--~~~~~~~  315 (512)
                      ...+.+||+.+.+...+...+.         ...-...+.|.  |+..+=++++ ...+|..|-- ....-  ..+..+.
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~---------~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip  291 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGE---------EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP  291 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-T---------TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred             cCeEEEEECCCCcEeeEEecCC---------CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence            5689999999988776653221         11224445554  4444444433 3445554432 22111  1122222


Q ss_pred             ece---------------eceeEEEEEECCCCCEEEEec-CCCCEEEEecCCCCCCCceec---c---------------
Q 010390          316 GCR---------------IESFYVKSEICPNASHILSGS-SDGNAYVWQVNKPQADPIKLK---S---------------  361 (512)
Q Consensus       316 ~~~---------------~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~---~---------------  361 (512)
                      ...               ....++.+.+|.|.++|.... .+|.|+.||+.....+...-+   +               
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~  371 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR  371 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred             CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence            111               134578899999999996655 589999999998765432211   0               


Q ss_pred             ccCCeEEEEeCCCCCCeEEEEe
Q 010390          362 HDGEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       362 h~~~v~~v~~~~~~~~~l~s~~  383 (512)
                      -.+...-|..|-||.++.+|.|
T Consensus       372 l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  372 LRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             --S----EEE-TTSSEEEEE--
T ss_pred             cCCCCCeEEEccCCeEEEEEee
Confidence            1223466778888844455544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.89  E-value=0.33  Score=44.16  Aligned_cols=204  Identities=10%  Similarity=0.078  Sum_probs=104.8

Q ss_pred             cCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 010390           62 SKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK  140 (512)
Q Consensus        62 s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  140 (512)
                      .++.. ++.+--..+.|.-|+..++.              ...+ .+.+.+.++..-..+..|+++. .| +.+++.+++
T Consensus        33 ~~~~~~L~w~DI~~~~i~r~~~~~g~--------------~~~~-~~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~   95 (307)
T COG3386          33 DPDRGALLWVDILGGRIHRLDPETGK--------------KRVF-PSPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTG   95 (307)
T ss_pred             cCCCCEEEEEeCCCCeEEEecCCcCc--------------eEEE-ECCCCcccceeecCCCeEEEEc-cc-cEEEeccCC
Confidence            55555 55555667788888876542              1222 2233445555544555666553 33 677887666


Q ss_pred             eeeeccc----C-cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390          141 KCTGALM----G-HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR  215 (512)
Q Consensus       141 ~~~~~~~----~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (512)
                      ..+..+.    + .....+.+...|+| .+.++... .    ++  ..........  .+        ....+.......
T Consensus        96 ~~~t~~~~~~~~~~~~r~ND~~v~pdG-~~wfgt~~-~----~~--~~~~~~~~~G--~l--------yr~~p~g~~~~l  157 (307)
T COG3386          96 GKITLLAEPEDGLPLNRPNDGVVDPDG-RIWFGDMG-Y----FD--LGKSEERPTG--SL--------YRVDPDGGVVRL  157 (307)
T ss_pred             ceeEEeccccCCCCcCCCCceeEcCCC-CEEEeCCC-c----cc--cCccccCCcc--eE--------EEEcCCCCEEEe
Confidence            5432221    1 11345667777876 43333322 1    11  0000000000  00        000001111122


Q ss_pred             cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC
Q 010390          216 RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD  295 (512)
Q Consensus       216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  295 (512)
                      ...+-..-+.++|+||++.++.+-+..+.|.-|++..........    ..........+..-.++.+.+|.+.+++..+
T Consensus       158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~----~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~  233 (307)
T COG3386         158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR----RGFVDFDEEPGLPDGMAVDADGNLWVAAVWG  233 (307)
T ss_pred             ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc----ceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence            223344568899999999999887777888888876311100000    0000122234556678888888877655555


Q ss_pred             C-eEEEEEcc
Q 010390          296 H-RIYLYNVL  304 (512)
Q Consensus       296 g-~i~i~d~~  304 (512)
                      | .|.+|+..
T Consensus       234 g~~v~~~~pd  243 (307)
T COG3386         234 GGRVVRFNPD  243 (307)
T ss_pred             CceEEEECCC
Confidence            4 89999864

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.87  E-value=0.3  Score=48.89  Aligned_cols=231  Identities=11%  Similarity=0.106  Sum_probs=114.3

Q ss_pred             CCCcEEEEeeCCC------cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC------C
Q 010390           63 KNSHIFAVSDEDG------YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD------Q  130 (512)
Q Consensus        63 ~~~~~latg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d------g  130 (512)
                      ..+.+++.||.++      .+..||..++...           ....+. +...-.+++.. ++...++||.|      .
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-----------~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~  349 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-----------SLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLS  349 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEe-----------ecCCCC-cccccccEEEE-CCEEEEEccccCCCcccc
Confidence            3467888888774      5778887765321           122222 22223444444 56777888888      3


Q ss_pred             cEEEEeCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCCCc-----EEEEeCCCCCCCCCccccceeeecccccc
Q 010390          131 TIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRDGS-----FAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       131 ~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      ++..||..+++-..  .+....... +++..  ++.+.+.||.||.     +-.||..+.+-....              
T Consensus       350 ~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--------------  412 (571)
T KOG4441|consen  350 SVERYDPRTNQWTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--------------  412 (571)
T ss_pred             eEEEecCCCCceeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccC--------------
Confidence            57788887765332  222221111 12222  3378899998864     556666654322211              


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCC------eEEEEeccCccceecccCCCccccccccccccCe
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS------IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                    .............-+..+.++|+.++      .+..||..+..-.....         +.......
T Consensus       413 --------------~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~---------M~~~R~~~  469 (571)
T KOG4441|consen  413 --------------PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP---------MNTRRSGF  469 (571)
T ss_pred             --------------CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC---------cccccccc
Confidence                          11112233333333344444455443      46778887765433211         11111111


Q ss_pred             eEEEeCCCCCEEEEEecCC-----eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC-----EEEE
Q 010390          278 SSLSQDSNGVFLTASCMDH-----RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN-----AYVW  347 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-----i~iw  347 (512)
                      . ++. -++.+.+.|+.|+     +|..||........+...........    ...-++...++|+.||.     |..|
T Consensus       470 g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g----~~~~~~~ly~vGG~~~~~~l~~ve~y  543 (571)
T KOG4441|consen  470 G-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG----VVVLGGKLYAVGGFDGNNNLNTVECY  543 (571)
T ss_pred             e-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc----EEEECCEEEEEecccCccccceeEEc
Confidence            1 222 2567778888776     36778765543333221111111110    11134566778887763     5566


Q ss_pred             ecCCC
Q 010390          348 QVNKP  352 (512)
Q Consensus       348 ~~~~~  352 (512)
                      |..+.
T Consensus       544 dp~~d  548 (571)
T KOG4441|consen  544 DPETD  548 (571)
T ss_pred             CCCCC
Confidence            55443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.86  E-value=0.016  Score=54.29  Aligned_cols=152  Identities=11%  Similarity=0.031  Sum_probs=95.4

Q ss_pred             EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-------EEEEEecCCeE
Q 010390          226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-------FLTASCMDHRI  298 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i  298 (512)
                      +....+.+.++..+.....++-.|+..++.+..           ...+.. |.-+.+.|+.+       .-+.|-.++.|
T Consensus       339 mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeE-----------Wk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~v  406 (644)
T KOG2395|consen  339 MLHRADSNLILMDGGEQDKLYKLDIERGKIVEE-----------WKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSV  406 (644)
T ss_pred             hhhccccceEeeCCCCcCcceeeecccceeeeE-----------eeccCC-cceeeccCCcchhcccccccEEeecCCce
Confidence            344456666777676677888889998887653           222222 66666666542       23456678999


Q ss_pred             EEEEcccCCCCceEeeeecee--ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCC
Q 010390          299 YLYNVLQLDKGPIQHFSGCRI--ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEA  376 (512)
Q Consensus       299 ~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~  376 (512)
                      .-||.+-.....+....++..  .....|.+-. ...+|++|+.+|.|++||- .+......+.+...+|..|..+.+| 
T Consensus       407 friDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadG-  483 (644)
T KOG2395|consen  407 FRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADG-  483 (644)
T ss_pred             EEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccC-
Confidence            999987433322222233221  1112233322 3458999999999999998 4444345677888999999999999 


Q ss_pred             CeEEEEeCCCcEEEEeC
Q 010390          377 GKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       377 ~~l~s~~~dg~i~vwd~  393 (512)
                      .+|+..+. ..+.+-++
T Consensus       484 Kwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  484 KWILATCK-TYLLLIDT  499 (644)
T ss_pred             cEEEEecc-cEEEEEEE
Confidence            55555443 45555554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.83  E-value=0.0051  Score=37.59  Aligned_cols=34  Identities=9%  Similarity=0.160  Sum_probs=30.0

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC  142 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  142 (512)
                      ...|..++|+|..++||.+..+|.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 5543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.82  E-value=0.032  Score=53.27  Aligned_cols=161  Identities=9%  Similarity=0.086  Sum_probs=95.1

Q ss_pred             ccEEEEEEeecCCEEEEEee--cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC----CCEEEEEec
Q 010390          221 MSITSVLYLKDEVSIATASA--VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN----GVFLTASCM  294 (512)
Q Consensus       221 ~~v~~~~~~~~~~~l~~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~  294 (512)
                      .++..++|. ||+.++.+.-  .+|.+++=|..                  ..+.-..|..+.|.|-    ...|++.-.
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~------------------viGqFEhV~GlsW~P~~~~~~paLLAVQH   80 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK------------------VIGQFEHVHGLSWAPPCTADTPALLAVQH   80 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCcc------------------EeeccceeeeeeecCcccCCCCceEEEec
Confidence            367888886 5555544331  23333332222                  2223345889999884    334555567


Q ss_pred             CCeEEEEEcccCC--C-CceEeeeec---eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE
Q 010390          295 DHRIYLYNVLQLD--K-GPIQHFSGC---RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA  368 (512)
Q Consensus       295 dg~i~i~d~~~~~--~-~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~  368 (512)
                      ...|.+|.+....  . +.+.....+   ........+.|+|....|++-.....-.++++......+..-..-.+.|.|
T Consensus        81 kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhC  160 (671)
T PF15390_consen   81 KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHC  160 (671)
T ss_pred             cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEE
Confidence            8899999985221  1 111111111   111122347899999988776665555666766554433333345678999


Q ss_pred             EEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          369 VNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       369 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      .+|.+||++++++.+..=.-+|||-.......
T Consensus       161 ACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~  192 (671)
T PF15390_consen  161 ACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHR  192 (671)
T ss_pred             EEecCcCCEEEEEeCCeEEEEEecCchhhhhh
Confidence            99999996666666776677899976654433

>PHA02713 hypothetical protein; Provisional

Probab=96.76  E-value=0.23  Score=49.76  Aligned_cols=68  Identities=3%  Similarity=-0.031  Sum_probs=39.8

Q ss_pred             CCCCEEEEecCC------CCEEEEecCC-CC-CCCceeccccCCeEEEEeCCCCCCeEEEEeCCC--cEEEEeCCCCccc
Q 010390          330 PNASHILSGSSD------GNAYVWQVNK-PQ-ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY--TVRLWSLENSRCS  399 (512)
Q Consensus       330 ~~~~~l~~g~~d------g~i~iw~~~~-~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~  399 (512)
                      -+++..+.|+.+      ..+..||..+ .+ .....+.........+.+  ++ .+.+.||.||  .+..||..+.+..
T Consensus       462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeecceeehhhcCccccccc
Confidence            346666777654      2367888876 32 212222222223333333  45 7899999888  6777888777655


Q ss_pred             c
Q 010390          400 S  400 (512)
Q Consensus       400 ~  400 (512)
                      .
T Consensus       539 ~  539 (557)
T PHA02713        539 H  539 (557)
T ss_pred             c
Confidence            4

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.73  E-value=0.1  Score=45.27  Aligned_cols=107  Identities=14%  Similarity=0.222  Sum_probs=67.0

Q ss_pred             eEEEEEecCCC-cEEEEeeCCCc-EEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---
Q 010390           55 AVSFCKTSKNS-HIFAVSDEDGY-VSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---  129 (512)
Q Consensus        55 ~v~~~~~s~~~-~~latg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---  129 (512)
                      .|.+   +|.- .-++.+-.-|+ ..++|.++......     .....-+.+.+|.      .|||||.+|...-.|   
T Consensus        72 gi~~---~p~~~ravafARrPGtf~~vfD~~~~~~pv~-----~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~  137 (366)
T COG3490          72 GIAF---HPALPRAVAFARRPGTFAMVFDPNGAQEPVT-----LVSQEGRHFYGHG------VFSPDGRLLYATENDFDP  137 (366)
T ss_pred             Ceec---CCCCcceEEEEecCCceEEEECCCCCcCcEE-----EecccCceeeccc------ccCCCCcEEEeecCCCCC
Confidence            5666   4433 34555555554 56788776543110     0011123344553      689999999865443   


Q ss_pred             --CcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390          130 --QTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus       130 --g~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                        |.|-|||...+ +.+.++..|.-.-..+.+.+|+ ..++.+.  |-|..-
T Consensus       138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG-rtlvvan--GGIeth  186 (366)
T COG3490         138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETH  186 (366)
T ss_pred             CCceEEEEecccccceecccccCCcCcceeEEecCC-cEEEEeC--Cceecc
Confidence              78999998755 5577788888788889999998 6665543  445444

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.72  E-value=0.37  Score=42.27  Aligned_cols=181  Identities=6%  Similarity=0.095  Sum_probs=111.3

Q ss_pred             ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCc-CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGH-TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      .+-...|.++.|+|+.+.|++......-.||=-.+|+.+.++.-. -....+|.+...+ ++.++--.++.+.++.+...
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCC
Confidence            445566999999999999998888887778877788888876421 2345567777655 66667677888888887755


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      ..........                 -........+.....++|.|.+..++++- +-.-+.||.+............ 
T Consensus       161 t~~~~~~~~~-----------------i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~~~~~~l~~~~~-  221 (316)
T COG3204         161 TTVISAKVQK-----------------IPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVTQSPSSLSVHAS-  221 (316)
T ss_pred             ccEEeccceE-----------------EeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEecCCcccccccc-
Confidence            3322211100                 00111122255788999999999988865 5666777766633211111000 


Q ss_pred             ccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEccc
Q 010390          264 AESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~  305 (512)
                      ..+.....-....|.++.|++. +.+|+.+..++.+.-.|...
T Consensus       222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence            0000011222345788888864 55666666777787788644

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.71  E-value=0.9  Score=46.65  Aligned_cols=295  Identities=11%  Similarity=0.105  Sum_probs=158.7

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      +-+.-+++|-+..+-.|..+|.++..||.+.-|-++.....+..         .+.-.--..++.--.|+..++.-+-+.
T Consensus       578 ~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd---------~Kk~~lGt~P~~Lr~f~sk~~t~vfa~  648 (1096)
T KOG1897|consen  578 SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSD---------RKKVTLGTQPISLRTFSSKSRTAVFAL  648 (1096)
T ss_pred             CCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcc---------ccccccCCCCcEEEEEeeCCceEEEEe
Confidence            34455677777777778899999999999987765543221100         111111234555556665554444445


Q ss_pred             CCCcEEEEeCCCCeeeecccCcCCCEEEEE-eeC-CCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLC-SHP-TNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~-~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      .|.-..+|.-+..-+...+.-  ..+..++ |+. ..+..++++.. +.+++..++.-+.....                
T Consensus       649 sdrP~viY~~n~kLv~spls~--kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~ir----------------  709 (1096)
T KOG1897|consen  649 SDRPTVIYSSNGKLVYSPLSL--KEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIR----------------  709 (1096)
T ss_pred             CCCCEEEEecCCcEEEeccch--HHhhhhcccccccCCceEEEecC-CceEEEEecchhhccee----------------
Confidence            566666776433222222211  1122111 222 22244555544 56777766643332211                


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEee----------cC---CeEEEEeccCccceecccCCCccccccccc
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA----------VN---SIVKFWDTRNLKAQITQAWPHAESSSAKET  272 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~----------~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  272 (512)
                               . ..-......+++.+....+++.+.          ..   ..++++|-++.+.........       ..
T Consensus       710 ---------t-vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~-------~E  772 (1096)
T KOG1897|consen  710 ---------T-VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER-------NE  772 (1096)
T ss_pred             ---------e-ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccc-------cc
Confidence                     0 112223444555543333322210          01   246677777665544322111       11


Q ss_pred             cccCeeEEEeCCC-CCEEEEEec----------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390          273 RLHGISSLSQDSN-GVFLTASCM----------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD  341 (512)
Q Consensus       273 ~~~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  341 (512)
                      ....+.+..|..| +.++++|..          .|.|.+|.+..  ...+.....+...+.+.++.. -+|++||.-  +
T Consensus       773 ~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e--~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n  847 (1096)
T KOG1897|consen  773 TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE--LNSLELVAETVVKGAVYALVE-FNGKLLAGI--N  847 (1096)
T ss_pred             eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec--CCceeeeeeeeeccceeehhh-hCCeEEEec--C
Confidence            1123555668777 677777752          47888888765  334444444444443433322 246666544  5


Q ss_pred             CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       342 g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      ..|++|+..+.+. +.....|..++..+...-.+ ..++.|.-=+.+.+-...
T Consensus       848 ~~vrLye~t~~~e-Lr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  848 QSVRLYEWTTERE-LRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             cEEEEEEccccce-ehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEEEe
Confidence            6799999988755 34556677889999888888 789998877776664443

>PHA02713 hypothetical protein; Provisional

Probab=96.64  E-value=0.3  Score=48.92  Aligned_cols=66  Identities=8%  Similarity=-0.034  Sum_probs=36.4

Q ss_pred             CCCEEEEEecC------CeEEEEEccc-CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC--CEEEEecCCCCC
Q 010390          285 NGVFLTASCMD------HRIYLYNVLQ-LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG--NAYVWQVNKPQA  354 (512)
Q Consensus       285 ~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~iw~~~~~~~  354 (512)
                      +++..+.|+.+      ..+..||..+ .....+..+.......   .++ .-+++..++|+.++  .+..||..+.+-
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~---~~~-~~~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL---HTI-LHDNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc---eeE-EECCEEEEEeeecceeehhhcCcccccc
Confidence            45666666643      2467788765 3333322222221111   111 13678888999888  677777776554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.63  E-value=0.01  Score=49.47  Aligned_cols=105  Identities=17%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEE-EEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDL-CWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      +.-+++|+.+|.|.+|..+....            .......-.+.|-++ .--.++.+..+++.||.|+.|++.-.+.+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~------------~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~  137 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGA------------HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL  137 (238)
T ss_pred             CceEEeecccceEEEecCCccch------------HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCcee
Confidence            45688899999999998762211            011111112233222 22224557789999999999999988888


Q ss_pred             ecccCcC-CCEEEEEeeCCCCCeEEEE--eCCCcEEEEeCCC
Q 010390          144 GALMGHT-GSIKSLCSHPTNSDILVSG--SRDGSFAIWDLRC  182 (512)
Q Consensus       144 ~~~~~h~-~~v~~l~~~~~~~~~l~s~--~~dg~i~vwd~~~  182 (512)
                      .....|. .++..+..+..+ ..++.+  +.|..++.|++..
T Consensus       138 g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  138 GYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence            8777777 455544444444 555555  6667777777653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.62  E-value=0.27  Score=49.18  Aligned_cols=234  Identities=13%  Similarity=0.077  Sum_probs=119.7

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCC------CcEEEEeCCCCC
Q 010390          119 EDTNILTASGD------QTIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRD------GSFAIWDLRCKS  184 (512)
Q Consensus       119 ~~~~l~s~~~d------g~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~~  184 (512)
                      .+..++.||.+      ..+..+|..+++..  ..+. ....-.+++... + .+.++||.|      .++..||.+..+
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCc
Confidence            35566677776      36788898877432  2233 233344555554 3 788999988      346667776554


Q ss_pred             CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC-----eEEEEeccCccceecc
Q 010390          185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS-----IVKFWDTRNLKAQITQ  259 (512)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg-----~i~iwd~~~~~~~~~~  259 (512)
                      -....                            .....-.......-+..+.+.|+.||     .+..||..+.+-....
T Consensus       361 W~~~a----------------------------~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va  412 (571)
T KOG4441|consen  361 WTPVA----------------------------PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA  412 (571)
T ss_pred             eeccC----------------------------CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC
Confidence            22211                            00011111222222344555566776     4777887765533221


Q ss_pred             cCCCccccccccccccCeeEEEeCCCCCEEEEEecCC------eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH------RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  333 (512)
                      .         ........-..  .-+|.+.++|+.++      ++..||..+........+.......   . .-.-++.
T Consensus       413 ~---------m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~---g-~a~~~~~  477 (571)
T KOG4441|consen  413 P---------MLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF---G-VAVLNGK  477 (571)
T ss_pred             C---------CCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc---e-EEEECCE
Confidence            0         11111111111  22677777887553      5677886654433332222211111   1 1124567


Q ss_pred             EEEEecCCCC-----EEEEecCCCCCCCce-eccccCCeEEEEeCCCCCCeEEEEeCCC-----cEEEEeCCCCccccc
Q 010390          334 HILSGSSDGN-----AYVWQVNKPQADPIK-LKSHDGEVTAVNWCPNEAGKIVTSSDDY-----TVRLWSLENSRCSSM  401 (512)
Q Consensus       334 ~l~~g~~dg~-----i~iw~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~  401 (512)
                      +.+.|+.|+.     |..||..+.+-.... +......+..+.+  ++ .+.+.|+.||     +|..||..+.+....
T Consensus       478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~-~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~  553 (571)
T KOG4441|consen  478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GG-KLYAVGGFDGNNNLNTVECYDPETDTWTEV  553 (571)
T ss_pred             EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CC-EEEEEecccCccccceeEEcCCCCCceeeC
Confidence            7788887763     777887765432211 2222223333333  23 6888888775     667777777665443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.59  E-value=0.009  Score=36.50  Aligned_cols=30  Identities=20%  Similarity=0.338  Sum_probs=25.1

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR   83 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~   83 (512)
                      .+|.+++|   +|..++||.|..+|.|.||.++
T Consensus        12 ~~v~~~~w---~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSW---CPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEE---CCCCCEEEEEECCCeEEEEECC
Confidence            34555555   9999999999999999999984

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.53  E-value=0.0061  Score=60.64  Aligned_cols=59  Identities=22%  Similarity=0.352  Sum_probs=43.9

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .-..++.-|.||+|-++.-++..+..+|.|++-+.++..              ...+.+|...+..++|...|
T Consensus       178 p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--------------~~l~rsHs~~~~d~a~~~~g  236 (1283)
T KOG1916|consen  178 PYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--------------RSLFRSHSQRVTDMAFFAEG  236 (1283)
T ss_pred             cCCCCcceeeecccccccceeeeccCCCceeEeeechHH--------------HHHHHhcCCCcccHHHHhhc
Confidence            344556889999999999999999999999998776432              23455688887777765443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.42  E-value=0.66  Score=41.95  Aligned_cols=152  Identities=11%  Similarity=0.147  Sum_probs=76.0

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      +.+..+..   ++||+++|++..-....-||-....-           .+.  -+.-...|..|.|.|++...+.+ ..|
T Consensus       145 gs~~~~~r---~~dG~~vavs~~G~~~~s~~~G~~~w-----------~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg  207 (302)
T PF14870_consen  145 GSINDITR---SSDGRYVAVSSRGNFYSSWDPGQTTW-----------QPH--NRNSSRRIQSMGFSPDGNLWMLA-RGG  207 (302)
T ss_dssp             --EEEEEE----TTS-EEEEETTSSEEEEE-TT-SS------------EEE--E--SSS-EEEEEE-TTS-EEEEE-TTT
T ss_pred             ceeEeEEE---CCCCcEEEEECcccEEEEecCCCccc-----------eEE--ccCccceehhceecCCCCEEEEe-CCc
Confidence            44556555   89999999987555556777432110           111  12245789999999997765644 888


Q ss_pred             cEEEEe-CCCCee----eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          131 TIKIWD-AEKKKC----TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       131 ~i~iwd-~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      .|+.=+ ....+.    +..+....-.+..++|.+++ ...++|+ .|.+.+ ....++.=.                  
T Consensus       208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l~~-S~DgGktW~------------------  266 (302)
T PF14870_consen  208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTLLV-STDGGKTWQ------------------  266 (302)
T ss_dssp             EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-EEE-ESSTTSS-E------------------
T ss_pred             EEEEccCCCCccccccccCCcccCceeeEEEEecCCC-CEEEEeC-CccEEE-eCCCCccce------------------
Confidence            888876 222221    11122233358899999875 5666555 455433 333332111                  


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEE
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW  248 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw  248 (512)
                            .......-...++.+.|....+-++. | .+|.|.-|
T Consensus       267 ------~~~~~~~~~~n~~~i~f~~~~~gf~l-G-~~G~ll~~  301 (302)
T PF14870_consen  267 ------KDRVGENVPSNLYRIVFVNPDKGFVL-G-QDGVLLRY  301 (302)
T ss_dssp             ------E-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred             ------ECccccCCCCceEEEEEcCCCceEEE-C-CCcEEEEe
Confidence                  00111122446888999877666665 6 68887655

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.085  Score=54.43  Aligned_cols=157  Identities=10%  Similarity=0.068  Sum_probs=91.7

Q ss_pred             ccEEEEEEeecCCEEEEEee-cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeE
Q 010390          221 MSITSVLYLKDEVSIATASA-VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRI  298 (512)
Q Consensus       221 ~~v~~~~~~~~~~~l~~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i  298 (512)
                      ..+..+...+|....++..+ ++-.|..||+++..........................++.|.|.-. ..++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            35666666777665554443 34478899998765433221111000001222223456788887543 45566688999


Q ss_pred             EEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC-Ccee-ccccCCeEEEEeCCCCC
Q 010390          299 YLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD-PIKL-KSHDGEVTAVNWCPNEA  376 (512)
Q Consensus       299 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~-~~~~-~~h~~~v~~v~~~~~~~  376 (512)
                      ++..+.....    ...........++++|+|.|+.++.|-..|++.-|...-.... +... ......|.+|.|-... 
T Consensus       181 ~V~~~~~~~~----~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~-  255 (1405)
T KOG3630|consen  181 RVKSTKQLAQ----NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQ-  255 (1405)
T ss_pred             hhhhhhhhhh----hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecce-
Confidence            8888743221    1111233455788999999999999999999998865432110 0011 1114689999998766 


Q ss_pred             CeEEEE
Q 010390          377 GKIVTS  382 (512)
Q Consensus       377 ~~l~s~  382 (512)
                      .++++-
T Consensus       256 eflvvy  261 (1405)
T KOG3630|consen  256 EFLVVY  261 (1405)
T ss_pred             eEEEEe
Confidence            455543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.19  E-value=0.29  Score=47.13  Aligned_cols=120  Identities=17%  Similarity=0.243  Sum_probs=73.7

Q ss_pred             cCCCcEEEEEEecC----CCEEEEEeCCCcEEEEeCCC-----Ceeee----cccCcCCC--EEEEEeeCCCCCeEEEEe
Q 010390          106 AHQNAIFDLCWIKE----DTNILTASGDQTIKIWDAEK-----KKCTG----ALMGHTGS--IKSLCSHPTNSDILVSGS  170 (512)
Q Consensus       106 ~h~~~V~~l~~s~~----~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~h~~~--v~~l~~~~~~~~~l~s~~  170 (512)
                      +.-+.|..++|.|-    ...|++......|.||.+..     .+.+.    .+. ..-+  -....|+|.. ..|+.-.
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~-e~~pvLpQGCVWHPk~-~iL~VLT  131 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIR-EPFPVLPQGCVWHPKK-AILTVLT  131 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeecc-CCcccCCCcccccCCC-ceEEEEe
Confidence            34467999999993    44566666788899998752     22221    111 0111  1345699987 5666555


Q ss_pred             CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390          171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDT  250 (512)
Q Consensus       171 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~  250 (512)
                      ....-.+++++.....                          +.......+.|.|.+|.+||+.++++-+..-.-++||-
T Consensus       132 ~~dvSV~~sV~~d~sr--------------------------VkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSR--------------------------VKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             cCceeEeeeeeeCCce--------------------------EEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            5444455565533211                          11122345689999999999999887655556788886


Q ss_pred             cCc
Q 010390          251 RNL  253 (512)
Q Consensus       251 ~~~  253 (512)
                      ...
T Consensus       186 ~qK  188 (671)
T PF15390_consen  186 AQK  188 (671)
T ss_pred             chh
Confidence            644

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.16  E-value=0.23  Score=51.47  Aligned_cols=157  Identities=10%  Similarity=-0.023  Sum_probs=89.5

Q ss_pred             CEEEEEeeCCCCCeEE-EEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390          152 SIKSLCSHPTNSDILV-SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK  230 (512)
Q Consensus       152 ~v~~l~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  230 (512)
                      ++..+...++.....+ ..+.+-.|..||++.-..........                ...............++.|+|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~p----------------l~~s~ts~ek~vf~~~~~wnP  165 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVP----------------LKNSATSFEKPVFQLKNVWNP  165 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccc----------------cccccchhccccccccccccC
Confidence            4555556666422222 33333478889987543322111000                000111122234567788888


Q ss_pred             cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc
Q 010390          231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP  310 (512)
Q Consensus       231 ~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  310 (512)
                      .-....++...|+.|.+..+........           ........++++|+|.|+.++.|...|++.-|...-.   .
T Consensus       166 ~vp~n~av~l~dlsl~V~~~~~~~~~v~-----------s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le---i  231 (1405)
T KOG3630|consen  166 LVPLNSAVDLSDLSLRVKSTKQLAQNVT-----------SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE---I  231 (1405)
T ss_pred             Cccchhhhhccccchhhhhhhhhhhhhc-----------ccCcccceeeEEeccccceeeEecCCCeEEEeecccc---e
Confidence            7655555566788888877664333221           1223345899999999999999999999999985321   1


Q ss_pred             eEeeeece--eceeEEEEEECCCCCEEEEe
Q 010390          311 IQHFSGCR--IESFYVKSEICPNASHILSG  338 (512)
Q Consensus       311 ~~~~~~~~--~~~~~~~~~~s~~~~~l~~g  338 (512)
                      ...+.+..  ....+.+++|-....++++-
T Consensus       232 k~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  232 KSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             eecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            12222111  13457788887777777653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.09  E-value=1.7  Score=43.21  Aligned_cols=26  Identities=8%  Similarity=0.107  Sum_probs=21.0

Q ss_pred             CCCEEEEecCCCCEEEEecCCCCCCC
Q 010390          331 NASHILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                      .+.+++.++.+|.++.+|.++++...
T Consensus       471 ~g~lvf~g~~~G~l~a~D~~TGe~lw  496 (527)
T TIGR03075       471 AGDLVFYGTLEGYFKAFDAKTGEELW  496 (527)
T ss_pred             CCcEEEEECCCCeEEEEECCCCCEeE
Confidence            44567778889999999999998743

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.83  E-value=0.069  Score=54.70  Aligned_cols=101  Identities=13%  Similarity=0.211  Sum_probs=69.8

Q ss_pred             EEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee
Q 010390          236 ATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS  315 (512)
Q Consensus       236 ~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  315 (512)
                      ++.|+..|.+-..|....-....          ....-.++|++++|+.+|..++.|-.+|.|.+||+............
T Consensus       102 ivi~Ts~ghvl~~d~~~nL~~~~----------~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen  102 IVIGTSHGHVLLSDMTGNLGPLH----------QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             EEEEcCchhhhhhhhhcccchhh----------cCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            33466788888888776422111          23444578999999999999999999999999999765444444555


Q ss_pred             eceeceeEEEEEECCCCCEEEEecCCCCEEEEec
Q 010390          316 GCRIESFYVKSEICPNASHILSGSSDGNAYVWQV  349 (512)
Q Consensus       316 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~  349 (512)
                      +++... +..+.+..++..++++...|.  +|.+
T Consensus       172 ~ap~t~-vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  172 GAPVTG-VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCccce-EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            555444 444555566667888887776  5544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.82  E-value=1.6  Score=40.59  Aligned_cols=273  Identities=10%  Similarity=0.095  Sum_probs=119.3

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccce-eccccCCCcEEEEEEecC---CCEEE-EE
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARI-SDWVAHQNAIFDLCWIKE---DTNIL-TA  126 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~s~~---~~~l~-s~  126 (512)
                      .+++|+|   .|||++|++ ...|.|++++.+.... .       ....+ ............++++|+   ..+|. +.
T Consensus         3 ~P~~~a~---~pdG~l~v~-e~~G~i~~~~~~g~~~-~-------~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~   70 (331)
T PF07995_consen    3 NPRSMAF---LPDGRLLVA-ERSGRIWVVDKDGSLK-T-------PVADLPEVFADGERGLLGIAFHPDFASNGYLYVYY   70 (331)
T ss_dssp             SEEEEEE---ETTSCEEEE-ETTTEEEEEETTTEEC-E-------EEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEE
T ss_pred             CceEEEE---eCCCcEEEE-eCCceEEEEeCCCcCc-c-------eecccccccccccCCcccceeccccCCCCEEEEEE
Confidence            3567888   899987665 5699999999332210 0       00001 123445678999999994   33443 33


Q ss_pred             eCC--------CcEEEEeCCCC-------eee-ecccC---cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390          127 SGD--------QTIKIWDAEKK-------KCT-GALMG---HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK  187 (512)
Q Consensus       127 ~~d--------g~i~iwd~~~~-------~~~-~~~~~---h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  187 (512)
                      +..        ..|.-|....+       +.+ ..+..   ....-..|.|.|++ .+.++.+..+.     ....+...
T Consensus        71 t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~-----~~~~~~~~  144 (331)
T PF07995_consen   71 TNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGN-----DDNAQDPN  144 (331)
T ss_dssp             EEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTT-----GGGGCSTT
T ss_pred             EcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCC-----cccccccc
Confidence            321        23444444333       111 11111   22345679999998 77676665544     11111111


Q ss_pred             Cccccceeeecc-cccccccc--cccccceecccccccEEEEEEeec-CCEEEEEeecCCeEEEEeccCccce---ecc-
Q 010390          188 SNCAESFVFSSA-VVKGAHLL--SQSKRVSRRKAASMSITSVLYLKD-EVSIATASAVNSIVKFWDTRNLKAQ---ITQ-  259 (512)
Q Consensus       188 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~g~~dg~i~iwd~~~~~~~---~~~-  259 (512)
                      ......+..... ........  ........+...-.....++|+|. +..+++--+.+..=.|--+..+...   ... 
T Consensus       145 ~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~  224 (331)
T PF07995_consen  145 SLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEG  224 (331)
T ss_dssp             SSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSS
T ss_pred             cccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcC
Confidence            111110000000 00000000  000011122223345678999998 6555543333333333333322210   000 


Q ss_pred             -------------cCC-CccccccccccccCeeEEEeCC-------CCCEEEEEecCCeEEEEEcccCCCCceEeeee--
Q 010390          260 -------------AWP-HAESSSAKETRLHGISSLSQDS-------NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG--  316 (512)
Q Consensus       260 -------------~~~-~~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--  316 (512)
                                   ..+ ...+...+ .+...+..+.|..       .+.+++..-..+.|....+.....  +.....  
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~  301 (331)
T PF07995_consen  225 GPKYSGPPIGDAPSCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS--VTEEEEFL  301 (331)
T ss_dssp             SCSTTSS-ECTGSS-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE--EEEEEEEC
T ss_pred             CCCCCCCccccccCCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC--ccceEEcc
Confidence                         000 00011111 2224455666643       345666666667888888753211  111111  


Q ss_pred             ceeceeEEEEEECCCCCEEEEecCCCCEE
Q 010390          317 CRIESFYVKSEICPNASHILSGSSDGNAY  345 (512)
Q Consensus       317 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  345 (512)
                      ......++.+++.|||.+.++-+.+|.|+
T Consensus       302 ~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  302 GGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             ccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            12223577899999999988888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.74  E-value=0.41  Score=48.12  Aligned_cols=159  Identities=15%  Similarity=0.111  Sum_probs=95.1

Q ss_pred             CCEEEEEeecCCeEEEEeccCccceec------cc-CCCccc-----cccccccccCeeEEEeCC--CCCEEEEEecCCe
Q 010390          232 EVSIATASAVNSIVKFWDTRNLKAQIT------QA-WPHAES-----SSAKETRLHGISSLSQDS--NGVFLTASCMDHR  297 (512)
Q Consensus       232 ~~~l~~~g~~dg~i~iwd~~~~~~~~~------~~-~~~~~~-----~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~  297 (512)
                      ...++++  ..+.|.||+.+.......      .. .+....     ..... ..+.|+.|....  +...|+.+..||.
T Consensus        49 ~n~LFiA--~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~  125 (717)
T PF08728_consen   49 RNLLFIA--YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGD  125 (717)
T ss_pred             CCEEEEE--ECCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCe
Confidence            5566664  389999999876544221      00 000000     00011 334566665543  5568999999999


Q ss_pred             EEEEEcccCC-----------C----CceEeeeeceeceeEEEEEEC--CCCCEEEEecCCCCEEEEecCCC--CCCCce
Q 010390          298 IYLYNVLQLD-----------K----GPIQHFSGCRIESFYVKSEIC--PNASHILSGSSDGNAYVWQVNKP--QADPIK  358 (512)
Q Consensus       298 i~i~d~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~s--~~~~~l~~g~~dg~i~iw~~~~~--~~~~~~  358 (512)
                      |.+|.+....           .    ..+..............++++  ...++||++++...|.||-+...  +.....
T Consensus       126 V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~  205 (717)
T PF08728_consen  126 VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP  205 (717)
T ss_pred             EEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence            9999863210           0    000011111223346678887  77889999999888988876543  211111


Q ss_pred             eccccCCeEEEEeCCCC--CC---eEEEEeCCCcEEEEeC
Q 010390          359 LKSHDGEVTAVNWCPNE--AG---KIVTSSDDYTVRLWSL  393 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~--~~---~l~s~~~dg~i~vwd~  393 (512)
                      -..|...|-+|.|.++.  +.   .|++++-.|.+-+|++
T Consensus       206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            22356679999997654  22   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.59  E-value=0.26  Score=45.74  Aligned_cols=164  Identities=10%  Similarity=0.058  Sum_probs=101.8

Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY  301 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  301 (512)
                      ..+.+-|...++.++++-  .|.+.=|.+.....-.        +........++|.++.|++|.+.|++--.+.+|.++
T Consensus        24 esngvFfDDaNkqlfavr--SggatgvvvkgpndDV--------piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~   93 (657)
T KOG2377|consen   24 ESNGVFFDDANKQLFAVR--SGGATGVVVKGPNDDV--------PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFC   93 (657)
T ss_pred             cccceeeccCcceEEEEe--cCCeeEEEEeCCCCCC--------CceeeecCCCceeEEEeccCcceEEEEecCceEEEE
Confidence            345566666666666543  5666666655433111        001223344689999999999999999999999999


Q ss_pred             EcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEE
Q 010390          302 NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT  381 (512)
Q Consensus       302 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s  381 (512)
                      +....+...............+....|+.+ .-+|.-...| +.+|.+...+...+....|.-.|.=..|+++..-.|++
T Consensus        94 nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen   94 NFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             ecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence            974433222222222222233667888776 5566666555 88888776666566677788888888899887333444


Q ss_pred             Ee-CCCcEEEEeCCCCc
Q 010390          382 SS-DDYTVRLWSLENSR  397 (512)
Q Consensus       382 ~~-~dg~i~vwd~~~~~  397 (512)
                      .+ ..+++.=+.+.++.
T Consensus       172 t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  172 TTVLENVLNPFHFRAGT  188 (657)
T ss_pred             ccccccccccEEEeece
Confidence            44 34444445444443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=1.1  Score=41.90  Aligned_cols=108  Identities=16%  Similarity=0.272  Sum_probs=76.2

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      .+++|.+|.|   |+|.+.||+--.+..|.+++....++..         ....+.+.....|....|+.+ .-+|.-..
T Consensus        65 d~G~I~SIkF---SlDnkilAVQR~~~~v~f~nf~~d~~~l---------~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~  131 (657)
T KOG2377|consen   65 DKGEIKSIKF---SLDNKILAVQRTSKTVDFCNFIPDNSQL---------EYTQECKTKNANILGFCWTSS-TEIAFITD  131 (657)
T ss_pred             CCCceeEEEe---ccCcceEEEEecCceEEEEecCCCchhh---------HHHHHhccCcceeEEEEEecC-eeEEEEec
Confidence            5678999999   9999999999999999999985443211         123334445567999999855 66776665


Q ss_pred             CCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEe
Q 010390          129 DQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGS  170 (512)
Q Consensus       129 dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  170 (512)
                      .| +-+|-.... +.++..+.|+..|+-..|.++..-.|++.+
T Consensus       132 ~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  132 QG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             CC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            56 777765443 345566778888998899987633344444

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.15  E-value=2.2  Score=42.71  Aligned_cols=52  Identities=15%  Similarity=0.326  Sum_probs=38.8

Q ss_pred             CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      --.|+|++. +|+.+..+.-..+.+-.+.|+.+  ..|++...||++++|++...
T Consensus        63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD--EELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             ceeEEEEec-cccchHHHHhcCCCeeeecccCC--ceEEEEeccceEEEeecchh
Confidence            345888885 56666665544458889999875  57888899999999998643

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.13  E-value=2.2  Score=37.84  Aligned_cols=160  Identities=14%  Similarity=0.085  Sum_probs=92.0

Q ss_pred             cEEEEEEeecCCEEEEEe--ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390          222 SITSVLYLKDEVSIATAS--AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY  299 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  299 (512)
                      .+.+.+.++++..+++..  .....+.++.........            .  ....+..-.|++++...+....+...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~------------~--~g~~l~~PS~d~~g~~W~v~~~~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV------------L--TGGSLTRPSWDPDGWVWTVDDGSGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee------------c--cCCccccccccCCCCEEEEEcCCCceE
Confidence            688999999999888766  333455555443322211            1  223577888999988777776666666


Q ss_pred             EEE-cccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec---CCCCEEEEecCCCCCC--------CceeccccCCeE
Q 010390          300 LYN-VLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS---SDGNAYVWQVNKPQAD--------PIKLKSHDGEVT  367 (512)
Q Consensus       300 i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iw~~~~~~~~--------~~~~~~h~~~v~  367 (512)
                      ++. ......... ..........|..+.+||||..++...   .++.|.+--+.....-        ..........++
T Consensus        91 ~~~~~~~g~~~~~-~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~  169 (253)
T PF10647_consen   91 VVRDSASGTGEPV-EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVT  169 (253)
T ss_pred             EEEecCCCcceeE-EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcce
Confidence            664 222222111 111111111688899999999886654   3466777655322111        111122346899


Q ss_pred             EEEeCCCCCCeEEEEe-CCCcEEE-EeCCCCc
Q 010390          368 AVNWCPNEAGKIVTSS-DDYTVRL-WSLENSR  397 (512)
Q Consensus       368 ~v~~~~~~~~~l~s~~-~dg~i~v-wd~~~~~  397 (512)
                      +++|.+++ .+++.+. .++.+.. ..+..+.
T Consensus       170 ~v~W~~~~-~L~V~~~~~~~~~~~~v~~dG~~  200 (253)
T PF10647_consen  170 DVAWSDDS-TLVVLGRSAGGPVVRLVSVDGGP  200 (253)
T ss_pred             eeeecCCC-EEEEEeCCCCCceeEEEEccCCc
Confidence            99999998 5555554 3443444 4454443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=94.78  E-value=2.1  Score=42.99  Aligned_cols=62  Identities=13%  Similarity=0.189  Sum_probs=32.4

Q ss_pred             CCCEEEEEeCCC------cEEEEeCCCCeeeec--ccCcCCCEEEEEeeCCCCCeEEEEeCCC-----cEEEEeCCCC
Q 010390          119 EDTNILTASGDQ------TIKIWDAEKKKCTGA--LMGHTGSIKSLCSHPTNSDILVSGSRDG-----SFAIWDLRCK  183 (512)
Q Consensus       119 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~  183 (512)
                      ++..++.||.++      .+..||..+.+....  +....... +++.. ++ .+++.||.++     .+..||..+.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~-~~-~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVF-NN-RIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEE-CC-EEEEEeCCCCCEecceEEEEcCCCC
Confidence            566667776542      577888877654221  11111112 22222 23 6777777652     4566776544

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.66  E-value=4.2  Score=38.76  Aligned_cols=149  Identities=14%  Similarity=0.180  Sum_probs=83.1

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-----CCCEEEEEeCCCcEEEEeCC
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-----EDTNILTASGDQTIKIWDAE  138 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~i~iwd~~  138 (512)
                      +.+.|++|+..|.++||+........        .. +.--..-+.+|..+..-+     +...||. -.-..+.||.+.
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~--------~~-lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~  105 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQP--------ED-LLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVS  105 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCC--------cc-EEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEE
Confidence            44699999999999999985433210        01 111123346788777542     2223333 455677788762


Q ss_pred             C--Ce-------eeecccCcC--CCEEEEEeeCCC----CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          139 K--KK-------CTGALMGHT--GSIKSLCSHPTN----SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       139 ~--~~-------~~~~~~~h~--~~v~~l~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      .  |.       .+..+..|.  .....+++-|-|    ..+++.-+.||.+.+++-+.-....                
T Consensus       106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~----------------  169 (418)
T PF14727_consen  106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR----------------  169 (418)
T ss_pred             ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE----------------
Confidence            1  11       112222232  223334443322    3689999999999999876322100                


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR  251 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~  251 (512)
                                  .....--...+.|.+....++++. .+..+..|...
T Consensus       170 ------------~lp~~llPgPl~Y~~~tDsfvt~s-ss~~l~~Yky~  204 (418)
T PF14727_consen  170 ------------FLPDFLLPGPLCYCPRTDSFVTAS-SSWTLECYKYQ  204 (418)
T ss_pred             ------------EcCCCCCCcCeEEeecCCEEEEec-CceeEEEecHH
Confidence                        001111234567888777787755 46778887654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.62  E-value=3  Score=36.82  Aligned_cols=281  Identities=11%  Similarity=0.023  Sum_probs=145.4

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD  129 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d  129 (512)
                      .+-+..+.+     .+++...+..+.-++|.|+.+....          .++..+. ..+--+++..  .|++...+..|
T Consensus        86 ~~l~~Dv~v-----se~yvyvad~ssGL~IvDIS~P~sP----------~~~~~ln-t~gyaygv~v--sGn~aYVadld  147 (370)
T COG5276          86 RDLFADVRV-----SEEYVYVADWSSGLRIVDISTPDSP----------TLIGFLN-TDGYAYGVYV--SGNYAYVADLD  147 (370)
T ss_pred             hhhhheeEe-----cccEEEEEcCCCceEEEeccCCCCc----------ceecccc-CCceEEEEEe--cCCEEEEeecc
Confidence            344556666     3567777777888999999876421          1122222 1133344443  58888887755


Q ss_pred             CcEEEEeCCCCe---eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          130 QTIKIWDAEKKK---CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       130 g~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      .-+.+.|+.+.+   ....+......-..++.+  | ++-..+..|+-+.+-|+.+.........               
T Consensus       148 dgfLivdvsdpssP~lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~---------------  209 (370)
T COG5276         148 DGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGS---------------  209 (370)
T ss_pred             CcEEEEECCCCCCceeeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEE---------------
Confidence            557788987653   334444444555667776  4 6777888899999999987654431100               


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG  286 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  286 (512)
                                ......+.++..+++..+++. .  +--+.+-|..+.+.......-.       ......++.+..  .+
T Consensus       210 ----------~n~g~g~~sv~vsdnr~y~vv-y--~egvlivd~s~~ssp~~~gsye-------t~~p~~~s~v~V--s~  267 (370)
T COG5276         210 ----------YNTGPGTYSVSVSDNRAYLVV-Y--DEGVLIVDVSGPSSPTVFGSYE-------TSNPVSISTVPV--SG  267 (370)
T ss_pred             ----------EecCCceEEEEecCCeeEEEE-c--ccceEEEecCCCCCceEeeccc-------cCCcccccceec--cc
Confidence                      011225666666666555544 2  4456677777665443221100       000111222233  45


Q ss_pred             CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCe
Q 010390          287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEV  366 (512)
Q Consensus       287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v  366 (512)
                      ++......+.-+.+-|+.+.....+..   +-............-+.++..+..+ ...+-+....+.+ -...+....+
T Consensus       268 ~~~Yvadga~gl~~idisnp~spfl~s---s~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s~m-~~~~g~~ti~  342 (370)
T COG5276         268 EYAYVADGAKGLPIIDISNPPSPFLSS---SLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPSMM-DKRPGRPTIG  342 (370)
T ss_pred             ceeeeeccccCceeEeccCCCCCchhc---cccCCCccccceEEecCeeEeccCC-ceEEEeCCChhhc-ccccCcceEe
Confidence            666676667677777775533222111   1000000000111223444444433 3444444433221 1111222233


Q ss_pred             EEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          367 TAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       367 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      .+.+.+-+. +.+.+...++-+.+|+..
T Consensus       343 ~s~~v~~~~-q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         343 QSCDVSVDT-QIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             eecceEEEe-eEEEEeecCCCEEEEEec
Confidence            444444445 577788888889999853

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.50  E-value=1.7  Score=44.63  Aligned_cols=76  Identities=17%  Similarity=0.288  Sum_probs=52.8

Q ss_pred             eeEEEEEECCCCCEEEEecCCCCEEEEecCC----------CCCCC--ce--------eccccCCeEEEEeCCCC--CCe
Q 010390          321 SFYVKSEICPNASHILSGSSDGNAYVWQVNK----------PQADP--IK--------LKSHDGEVTAVNWCPNE--AGK  378 (512)
Q Consensus       321 ~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~----------~~~~~--~~--------~~~h~~~v~~v~~~~~~--~~~  378 (512)
                      -.|..+.++++|.+|+..|..| |.|-.+..          ++..+  ..        ...+...|..+.|+|.+  ...
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3567789999999999888766 55555432          11100  11        12334589999999974  368


Q ss_pred             EEEEeCCCcEEEEeCCCCc
Q 010390          379 IVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       379 l~s~~~dg~i~vwd~~~~~  397 (512)
                      |+.-..|+++|+||+...+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            8889999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.44  E-value=1.2  Score=44.59  Aligned_cols=114  Identities=15%  Similarity=0.157  Sum_probs=71.1

Q ss_pred             EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC--CCCCEEEEEecCCeEEE
Q 010390          223 ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD--SNGVFLTASCMDHRIYL  300 (512)
Q Consensus       223 v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i  300 (512)
                      ..-+.-+.-++..++ .+....+.|||.+.+......          .....+.|..+.|.  |+++.+++.+..+.|.+
T Consensus        32 ~~li~gss~~k~a~V-~~~~~~LtIWD~~~~~lE~~~----------~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l  100 (631)
T PF12234_consen   32 PSLISGSSIKKIAVV-DSSRSELTIWDTRSGVLEYEE----------SFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL  100 (631)
T ss_pred             cceEeecccCcEEEE-ECCCCEEEEEEcCCcEEEEee----------eecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence            333444443443333 545778999999988755432          22345678999885  68898888889999999


Q ss_pred             EEccc-------CCCCceEeeeecee-ceeEEEEEECCCCCEEEEecCCCCEEEEec
Q 010390          301 YNVLQ-------LDKGPIQHFSGCRI-ESFYVKSEICPNASHILSGSSDGNAYVWQV  349 (512)
Q Consensus       301 ~d~~~-------~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~  349 (512)
                      |--..       ....++..+.-... ...+.+..|.++|.++++.+  +.+.|++-
T Consensus       101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            86421       11122333322111 23466788999998776654  55888864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=94.40  E-value=2.2  Score=42.92  Aligned_cols=110  Identities=6%  Similarity=0.010  Sum_probs=53.6

Q ss_pred             CCCEEEEEecC------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC--------CEEEEecC
Q 010390          285 NGVFLTASCMD------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG--------NAYVWQVN  350 (512)
Q Consensus       285 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--------~i~iw~~~  350 (512)
                      ++++.+.|+.+      +.+..||..+...............   . .+...++..++.|+.++        .+.+||..
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~---~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  464 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG---G-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPV  464 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC---c-eEEEECCEEEEECCccCCCCCcccceEEEecCC
Confidence            56666666632      4578888765433222211111100   1 12223566667776432        27888887


Q ss_pred             CCCCCC-ceeccccCCeEEEEeCCCCCCeEEEEeCC-----CcEEEEeCCCCccccc
Q 010390          351 KPQADP-IKLKSHDGEVTAVNWCPNEAGKIVTSSDD-----YTVRLWSLENSRCSSM  401 (512)
Q Consensus       351 ~~~~~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~  401 (512)
                      +.+-.. ..+.........+.+  ++ .+++.||.+     ..+.++|..+.+....
T Consensus       465 ~~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  518 (534)
T PHA03098        465 TNKWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNTWTLF  518 (534)
T ss_pred             CCceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence            653211 111111111122223  44 677777754     4678888887765443

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.36  E-value=3.3  Score=36.34  Aligned_cols=186  Identities=15%  Similarity=0.026  Sum_probs=97.4

Q ss_pred             CEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390          152 SIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL  229 (512)
Q Consensus       152 ~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  229 (512)
                      -...+.|..++ .++-+.+.-|  .|+.+|+.+++.......+.                          ..--..++..
T Consensus        46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--------------------------~~FgEGit~~   98 (264)
T PF05096_consen   46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--------------------------RYFGEGITIL   98 (264)
T ss_dssp             EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--------------------------T--EEEEEEE
T ss_pred             cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--------------------------cccceeEEEE
Confidence            45678886666 7888888776  78899998876433211110                          1112233333


Q ss_pred             ecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC
Q 010390          230 KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG  309 (512)
Q Consensus       230 ~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  309 (512)
                      .  ..+.-..-.++...+||..+.+.......         .   +.-..++  .++..|+.+.....|+++|..+.+..
T Consensus        99 ~--d~l~qLTWk~~~~f~yd~~tl~~~~~~~y---------~---~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~  162 (264)
T PF05096_consen   99 G--DKLYQLTWKEGTGFVYDPNTLKKIGTFPY---------P---GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV  162 (264)
T ss_dssp             T--TEEEEEESSSSEEEEEETTTTEEEEEEE----------S---SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred             C--CEEEEEEecCCeEEEEccccceEEEEEec---------C---CcceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence            2  23333345789999999998776654321         1   2233444  46778888877889999997654322


Q ss_pred             ceEeee-eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee---------------ccccCCeEEEEeCC
Q 010390          310 PIQHFS-GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL---------------KSHDGEVTAVNWCP  373 (512)
Q Consensus       310 ~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---------------~~h~~~v~~v~~~~  373 (512)
                      ...... ....-..+.-+.|- +|...|=.=....|...|..+++.. ..+               ....+-.+.|||.|
T Consensus       163 ~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~-~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~  240 (264)
T PF05096_consen  163 RTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV-GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDP  240 (264)
T ss_dssp             EEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE-EEEE-HHHHHHHTSTTST--TTS-EEEEEEET
T ss_pred             EEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE-EEEEhhHhhhcccccccccccCCeeEeEeEeC
Confidence            211111 11111123334442 4444443333445666666665431 111               01145689999999


Q ss_pred             CCCCeEEEE
Q 010390          374 NEAGKIVTS  382 (512)
Q Consensus       374 ~~~~~l~s~  382 (512)
                      ....+++||
T Consensus       241 ~~~~l~vTG  249 (264)
T PF05096_consen  241 ETDRLFVTG  249 (264)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCEEEEEe
Confidence            885666666

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=94.32  E-value=4.1  Score=37.25  Aligned_cols=61  Identities=8%  Similarity=0.114  Sum_probs=40.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCC--CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          120 DTNILTASGDQTIKIWDAEK--KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      +++|+.|+++| +.+-++..  ++..+.+  +...|+++...+..+-+++.++....++++++..-
T Consensus        13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L   75 (302)
T smart00036       13 GKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL   75 (302)
T ss_pred             CcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence            36899999999 66666654  2333333  45689999999877334444444455999998543

Unpublished observations.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.27  E-value=0.93  Score=39.68  Aligned_cols=115  Identities=10%  Similarity=-0.004  Sum_probs=67.4

Q ss_pred             cEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCeeeecccCc-CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390          110 AIFDLCWIKEDTNILTASGDQ--TIKIWDAEKKKCTGALMGH-TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      -.-.+.|..++.++-+.+.-|  .|+.+|+.+++......-. .---..++...+  .+..-.-.++...+||..+.+..
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceEE
Confidence            345678877887777877766  7999999999876544321 122334455432  45555567889999998754432


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                      ...                            .....=..++  .++..++.+.+ ...+.++|..+.+...
T Consensus       124 ~~~----------------------------~y~~EGWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~  163 (264)
T PF05096_consen  124 GTF----------------------------PYPGEGWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVR  163 (264)
T ss_dssp             EEE----------------------------E-SSS--EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEE
T ss_pred             EEE----------------------------ecCCcceEEE--cCCCEEEEECC-ccceEEECCcccceEE
Confidence            211                            1122344455  56667776443 5689999987765543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.09  E-value=2.1  Score=42.83  Aligned_cols=123  Identities=10%  Similarity=0.097  Sum_probs=71.2

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEee--CCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390          110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSH--PTNSDILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      ...-+.-+.-++.-++-+....+.|||...+.....-. ...+.|..+.|.  |++ +.+++.|....|.++.-......
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhh
Confidence            33334444444443444445679999998886433222 346789999985  455 77888888889999864321111


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR  251 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~  251 (512)
                      ...               ......+.+.....-..+|.+..|.++|..++.+   +..+.|+|-.
T Consensus       110 ~~~---------------p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s---GNqlfv~dk~  156 (631)
T PF12234_consen  110 NKG---------------PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS---GNQLFVFDKW  156 (631)
T ss_pred             cCC---------------cccceeEEEEeecCCCCCccceeEecCCeEEEEe---CCEEEEECCC
Confidence            000               0000111111111122578999999999888764   4678888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.87  E-value=0.0099  Score=55.15  Aligned_cols=151  Identities=15%  Similarity=0.194  Sum_probs=101.5

Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEE-EEecCCeEEE
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT-ASCMDHRIYL  300 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i  300 (512)
                      ......|-+.+..++.++ .+..+..||-......             .....+....|+|+.++..++ .+-..+.+.+
T Consensus        36 ~pi~~~w~~e~~nlavac-a~tiv~~YD~agq~~l-------------e~n~tg~aldm~wDkegdvlavlAek~~piyl  101 (615)
T KOG2247|consen   36 GPIIHRWRPEGHNLAVAC-ANTIVIYYDKAGQVIL-------------ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYL  101 (615)
T ss_pred             ccceeeEecCCCceehhh-hhhHHHhhhhhcceec-------------ccCCchhHhhhhhccccchhhhhhhcCCCeee
Confidence            444566788888887766 5888888886543322             111223456788888777555 4557789999


Q ss_pred             EEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEE
Q 010390          301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIV  380 (512)
Q Consensus       301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~  380 (512)
                      ||+.+.....+.. .+......   +.|++.+..++.|...|.+.|++....+.. .....|...+++++|.+.+  +.+
T Consensus       102 wd~n~eytqqLE~-gg~~s~sl---l~wsKg~~el~ig~~~gn~viynhgtsR~i-iv~Gkh~RRgtq~av~lEd--~vi  174 (615)
T KOG2247|consen  102 WDVNSEYTQQLES-GGTSSKSL---LAWSKGTPELVIGNNAGNIVIYNHGTSRRI-IVMGKHQRRGTQIAVTLED--YVI  174 (615)
T ss_pred             chhhhhhHHHHhc-cCcchHHH---HhhccCCccccccccccceEEEeccchhhh-hhhcccccceeEEEecccc--eee
Confidence            9997643332222 12111121   689999999999999999999998877653 3444499999999999986  677


Q ss_pred             EEeCCCcEEEEeC
Q 010390          381 TSSDDYTVRLWSL  393 (512)
Q Consensus       381 s~~~dg~i~vwd~  393 (512)
                      .++.|..+.+-..
T Consensus       175 l~dcd~~L~v~~q  187 (615)
T KOG2247|consen  175 LCDCDNTLSVTTQ  187 (615)
T ss_pred             ecCcHHHHHHhhh
Confidence            7777766554443

>PRK10115 protease 2; Provisional

Probab=93.81  E-value=9.5  Score=39.56  Aligned_cols=112  Identities=4%  Similarity=-0.040  Sum_probs=64.2

Q ss_pred             ceEEEEEecCCCcEEEEeeC-----CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           54 LAVSFCKTSKNSHIFAVSDE-----DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        54 ~~v~~~~~s~~~~~latg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      .++....+||||++||.+..     .-.|++-|+.++...            ...+.+   .-..++|.+|++.|+....
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l------------~~~i~~---~~~~~~w~~D~~~~~y~~~  191 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY------------PELLDN---VEPSFVWANDSWTFYYVRK  191 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC------------CccccC---cceEEEEeeCCCEEEEEEe
Confidence            56666667999999988632     234888888766421            011111   1156999999987775543


Q ss_pred             C------CcEEEEeCCCC--eeeecccCcCCCEEEEEeeC-CCCCeEEEEeC---CCcEEEEeCC
Q 010390          129 D------QTIKIWDAEKK--KCTGALMGHTGSIKSLCSHP-TNSDILVSGSR---DGSFAIWDLR  181 (512)
Q Consensus       129 d------g~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~---dg~i~vwd~~  181 (512)
                      +      ..|+.+++.++  +....+........-..+.+ ++ .+++..+.   ++.+.+++..
T Consensus       192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSK-HYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCC-CEEEEEEECCccccEEEEECc
Confidence            2      36788888887  33333443333333223334 55 44433332   3578888854

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.80  E-value=0.28  Score=29.05  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=27.1

Q ss_pred             CCEEEEEeeCCCC--CeEEEEeCCCcEEEEeCCC
Q 010390          151 GSIKSLCSHPTNS--DILVSGSRDGSFAIWDLRC  182 (512)
Q Consensus       151 ~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~  182 (512)
                      +.|.++.|+|...  .+|+-+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998764  6888888889999999985

It contains a characteristic DLL sequence motif.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.61  E-value=11  Score=39.44  Aligned_cols=249  Identities=10%  Similarity=0.072  Sum_probs=125.8

Q ss_pred             cCCcceEEEEEecCCC-cEEEEe---eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE--Eec-CCCE
Q 010390           50 ETPPLAVSFCKTSKNS-HIFAVS---DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC--WIK-EDTN  122 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~-~~latg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~s~-~~~~  122 (512)
                      -+||..+.....-.+| ..++|+   ..||+++|..-.-+.          +......+.| -..++.+.  +.+ -..+
T Consensus       353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I----------~e~A~i~l~G-ikg~w~lk~~v~~~~d~y  421 (1096)
T KOG1897|consen  353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGI----------DELASIDLPG-IKGMWSLKSMVDENYDNY  421 (1096)
T ss_pred             ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccccc----------ceeeEeecCC-ccceeEeeccccccCCcE
Confidence            4577777776543112 244443   578999998643221          1122334444 45667776  444 1235


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      |+.+--+. -++..+...-......+.......+..+.-+.+.|+=... ..||+++-....  .               
T Consensus       422 lvlsf~~e-Trvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~~~~--~---------------  482 (1096)
T KOG1897|consen  422 LVLSFISE-TRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSAGLR--S---------------  482 (1096)
T ss_pred             EEEEeccc-eEEEEEccceEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcchhhh--h---------------
Confidence            65554433 3455543332222223333334444444333333333332 356666543110  0               


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ  282 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (512)
                                  .+ ...+.++....+.+...+++++ .++.+...++........          ........|.|+.+
T Consensus       483 ------------~W-~~p~~~ti~~~~~n~sqVvvA~-~~~~l~y~~i~~~~l~e~----------~~~~~e~evaCLDi  538 (1096)
T KOG1897|consen  483 ------------EW-RPPGKITIGVVSANASQVVVAG-GGLALFYLEIEDGGLREV----------SHKEFEYEVACLDI  538 (1096)
T ss_pred             ------------cc-cCCCceEEEEEeecceEEEEec-CccEEEEEEeeccceeee----------eeheecceeEEEec
Confidence                        11 1122444445555555676666 367777777765552211          22333466999999


Q ss_pred             CCCC------CEEEEEecCCeEEEEEccc-CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390          283 DSNG------VFLTASCMDHRIYLYNVLQ-LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       283 ~~~~------~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~  352 (512)
                      +|-|      +++++|..+..+.+.-... ........+........+.-.++-.|..+|.++..||.+.-|.+...
T Consensus       539 sp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~  615 (1096)
T KOG1897|consen  539 SPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN  615 (1096)
T ss_pred             ccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence            8742      3788888776655543322 11111111222222233444566677899999999999887766543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.55  E-value=5.4  Score=42.81  Aligned_cols=175  Identities=11%  Similarity=0.109  Sum_probs=96.7

Q ss_pred             CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEee--------CCCCCeEEEEeCCCcEEEE
Q 010390          107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH--------PTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--------~~~~~~l~s~~~dg~i~vw  178 (512)
                      |...-..+-+.|.=.+... +-|+.+.+|+.+++.....+.+-...|..+..-        |.=.++|+.+. --.|.++
T Consensus        77 ~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~il  154 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVIL  154 (1311)
T ss_pred             CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEE
Confidence            4444445555553333332 247889999999987777777777677766542        22212333333 3456666


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc--Cccce
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NLKAQ  256 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~~~~  256 (512)
                      -+.-.+.......  +                ............|.++....+|+.+++ | .||  .+|.+.  ....-
T Consensus       155 gV~~~~~~~~~~~--f----------------~~~~~i~~dg~~V~~I~~t~nGRIF~~-G-~dg--~lyEl~Yq~~~gW  212 (1311)
T KOG1900|consen  155 GVSFDEFTGELSI--F----------------NTSFKISVDGVSVNCITYTENGRIFFA-G-RDG--NLYELVYQAEDGW  212 (1311)
T ss_pred             EEEeccccCcccc--c----------------ccceeeecCCceEEEEEeccCCcEEEe-e-cCC--CEEEEEEeccCch
Confidence            5432221111000  0                000122233457899997778877764 5 677  444432  11000


Q ss_pred             ecc----cCCCc-------cccccc-cccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          257 ITQ----AWPHA-------ESSSAK-ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       257 ~~~----~~~~~-------~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                      ...    .....       ...... ..+..+|..++++..-..+++-+..|+|.+||+..
T Consensus       213 f~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  213 FGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            000    00000       001112 25567899999999889999999999999999865

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.53  E-value=0.089  Score=52.87  Aligned_cols=124  Identities=9%  Similarity=0.103  Sum_probs=71.1

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec---CCCE
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK---EDTN  122 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~---~~~~  122 (512)
                      .+|+.+.|..+.|..  -+-..++  -.-|.+.|||++--+...++      .-.+.....-...+.-+.|.|   +..+
T Consensus       128 ~kgf~G~v~dl~fah--~~~pk~~--~~vg~lfVy~vd~l~G~iq~------~l~v~~~~p~gs~~~~V~wcp~~~~~~~  197 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAH--TKCPKGR--RLVGELFVYDVDVLQGEIQP------QLEVTPITPYGSDPQLVSWCPIAVNKVY  197 (1283)
T ss_pred             HhcCCCCcccccccc--cCChHHH--HHhhhhheeehHhhcccccc------ceEEeecCcCCCCcceeeecccccccce
Confidence            567888898888842  2222222  34467899997642211111      111222222334445556655   6677


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCC----------CeEEEEeCCCcEEEEeC
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS----------DILVSGSRDGSFAIWDL  180 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~----------~~l~s~~~dg~i~vwd~  180 (512)
                      +..+..+++|++.++++... ..+.+|...+..++|...|-          ..|+.++.||.+++|.+
T Consensus       198 ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  198 ICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            77888889999887765433 55666888777776644332          45555555555555543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.47  E-value=0.35  Score=28.65  Aligned_cols=32  Identities=13%  Similarity=0.250  Sum_probs=26.7

Q ss_pred             CCeEEEEeCCCCC--CeEEEEeCCCcEEEEeCCC
Q 010390          364 GEVTAVNWCPNEA--GKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       364 ~~v~~v~~~~~~~--~~l~s~~~dg~i~vwd~~~  395 (512)
                      +.|.++.|+|...  .+|+.+-.-|.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998663  5888888889999999985

It contains a characteristic DLL sequence motif.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.36  E-value=3  Score=35.47  Aligned_cols=120  Identities=17%  Similarity=0.082  Sum_probs=73.0

Q ss_pred             eeeEeecCCccCC--------cceEEEEEecCCCcEEEE-eeCCCcEEEEE--CCCCCCccccccccccccceecccc--
Q 010390           40 GAVTVEHHGEETP--------PLAVSFCKTSKNSHIFAV-SDEDGYVSLFD--SRRKLPSFACHRENAEKARISDWVA--  106 (512)
Q Consensus        40 ~~~~~~~~gh~~~--------v~~v~~~~~s~~~~~lat-g~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~--  106 (512)
                      |.++.-+.+|.-.        .++++|   +.+.+.+.. -+.+-.|.-||  ..++....        .+.+..++.  
T Consensus       139 g~Ly~~~~~h~v~~i~~~v~IsNgl~W---d~d~K~fY~iDsln~~V~a~dyd~~tG~~sn--------r~~i~dlrk~~  207 (310)
T KOG4499|consen  139 GELYSWLAGHQVELIWNCVGISNGLAW---DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN--------RKVIFDLRKSQ  207 (310)
T ss_pred             cEEEEeccCCCceeeehhccCCccccc---cccCcEEEEEccCceEEeeeecCCCcccccC--------cceeEEeccCC
Confidence            3555555555422        356777   666665544 45666777787  44443211        111222211  


Q ss_pred             -CC-CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEe
Q 010390          107 -HQ-NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS  170 (512)
Q Consensus       107 -h~-~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  170 (512)
                       .. -.--.++...+|.+.++.-..++|...|..+|+.+.++.-....|++.+|--.+-.+|++..
T Consensus       208 ~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  208 PFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence             00 01112333457888888888899999999999999999888899999999754324444433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.35  E-value=0.46  Score=47.77  Aligned_cols=128  Identities=10%  Similarity=0.112  Sum_probs=79.2

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccc-------ccccceeccccCCCcEEEEEEe--cCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHREN-------AEKARISDWVAHQNAIFDLCWI--KEDT  121 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~V~~l~~s--~~~~  121 (512)
                      ..|+-|....+ -+...|+.+..||.|.+|.++.-..........       ...++...+. -...+++++++  ...+
T Consensus       101 HtIN~i~v~~l-g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r  178 (717)
T PF08728_consen  101 HTINFIKVGDL-GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR  178 (717)
T ss_pred             ceeeEEEeccc-CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce
Confidence            33555544333 345689999999999999764321100000000       0111222222 34589999998  7888


Q ss_pred             EEEEEeCCCcEEEEeCCCC--eeee-cccCcCCCEEEEEeeCCC--CC---eEEEEeCCCcEEEEeC
Q 010390          122 NILTASGDQTIKIWDAEKK--KCTG-ALMGHTGSIKSLCSHPTN--SD---ILVSGSRDGSFAIWDL  180 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~--~~~~-~~~~h~~~v~~l~~~~~~--~~---~l~s~~~dg~i~vwd~  180 (512)
                      +||.++....|.||-....  +... .-..|...|-+|+|.++.  +.   .+++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8898888888888865442  1111 111256689999998754  22   7888899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.28  E-value=5.6  Score=35.29  Aligned_cols=113  Identities=14%  Similarity=0.107  Sum_probs=64.8

Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEe-ccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe---cCCe
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWD-TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC---MDHR  297 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~  297 (512)
                      .+..-.|.+++...++.. .+....++. ...+.......        ........|..+.++|||..++...   .++.
T Consensus        67 ~l~~PS~d~~g~~W~v~~-~~~~~~~~~~~~~g~~~~~~v--------~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~  137 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDD-GSGGVRVVRDSASGTGEPVEV--------DWPGLRGRITALRVSPDGTRVAVVVEDGGGGR  137 (253)
T ss_pred             ccccccccCCCCEEEEEc-CCCceEEEEecCCCcceeEEe--------cccccCCceEEEEECCCCcEEEEEEecCCCCe
Confidence            667778888866665533 355555553 22222221110        1111111799999999999888765   3578


Q ss_pred             EEEEEcccCCCC-ceEeeee----ceeceeEEEEEECCCCCEEEEecCCCC
Q 010390          298 IYLYNVLQLDKG-PIQHFSG----CRIESFYVKSEICPNASHILSGSSDGN  343 (512)
Q Consensus       298 i~i~d~~~~~~~-~~~~~~~----~~~~~~~~~~~~s~~~~~l~~g~~dg~  343 (512)
                      |.+--+...... +......    ......+..++|.+++.+++.+...+.
T Consensus       138 v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  138 VYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             EEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence            888776543333 1111111    111345778999999998877665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.24  E-value=1.5  Score=41.63  Aligned_cols=147  Identities=10%  Similarity=0.063  Sum_probs=84.5

Q ss_pred             EeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-------CEEEEEecCCeEEE
Q 010390          228 YLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-------VFLTASCMDHRIYL  300 (512)
Q Consensus       228 ~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~~~~~dg~i~i  300 (512)
                      ...+...++..|.....++--|+..++.+..           ...+.. + -+.+.|+.       ..-++|-++..|.-
T Consensus       475 h~~dssli~~dg~~~~kLykmDIErGkvvee-----------W~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFr  541 (776)
T COG5167         475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEE-----------WDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFR  541 (776)
T ss_pred             ecCCcceEEecCCCcccceeeecccceeeeE-----------eecCCc-c-eeecCCchhHHhcCccceEEeecccceEE
Confidence            3445566666666666777777777766542           222221 2 35555532       22345556666766


Q ss_pred             EEcccCCCCceEeeeeceeceeEEEEEEC----CCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCC
Q 010390          301 YNVLQLDKGPIQHFSGCRIESFYVKSEIC----PNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEA  376 (512)
Q Consensus       301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~  376 (512)
                      .|.+-... .+.....   ..+.+.-.|+    ....++|+|+..|-|++||--.... ...+.+....|..+..+.+| 
T Consensus       542 IDPR~~gN-Ki~v~es---KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA-KtalP~lG~aIk~idvta~G-  615 (776)
T COG5167         542 IDPRARGN-KIKVVES---KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA-KTALPGLGDAIKHIDVTANG-  615 (776)
T ss_pred             ecccccCC-ceeeeee---hhccccccccccccccCceEEEecCCCceeeehhhcchh-hhcCcccccceeeeEeecCC-
Confidence            67544221 1111111   1122222333    3456999999999999999755443 34566777899999999999 


Q ss_pred             CeEEEEeCCCcEEEEeCC
Q 010390          377 GKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       377 ~~l~s~~~dg~i~vwd~~  394 (512)
                      .++++.+. ..+.+-|+.
T Consensus       616 k~ilaTCk-~yllL~d~~  632 (776)
T COG5167         616 KHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cEEEEeec-ceEEEEecc
Confidence            45444443 356666654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.04  E-value=2.7  Score=35.43  Aligned_cols=107  Identities=10%  Similarity=0.170  Sum_probs=65.1

Q ss_pred             CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC------CCEEEE---ecCC-C-CCC
Q 010390          287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD------GNAYVW---QVNK-P-QAD  355 (512)
Q Consensus       287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------g~i~iw---~~~~-~-~~~  355 (512)
                      ..|+.+...+.|.+|++..........+...   +.+..+.++..|++|++--.+      ..+|+|   +... . ...
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            4555556778899999985555555555443   567789999999999985332      246665   2221 1 110


Q ss_pred             Cceecc---------------------ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          356 PIKLKS---------------------HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       356 ~~~~~~---------------------h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      ...+.|                     -..++.+++..|-. .-|+.|+ ++++.+|.+..+..
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~t-G~LlVg~-~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVT-GNLLVGC-GNKLVLFTLKYQTI  167 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCC-CCEEEEc-CCEEEEEEEEEEEE
Confidence            111112                     23467788888876 3455554 35799998876543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.84  E-value=5.5  Score=33.96  Aligned_cols=103  Identities=7%  Similarity=-0.059  Sum_probs=59.6

Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEe--ccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWD--TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY  299 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  299 (512)
                      .-+.++|+.+.+.+...-+.+-.|.-||  ..++........-....  ...........++++.+|++.++.-..++|.
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk--~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRK--SQPFESLEPDGMTIDTEGNLYVATFNGGTVQ  236 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEecc--CCCcCCCCCCcceEccCCcEEEEEecCcEEE
Confidence            3467889888888888777788887787  44443221100000000  0000111233466677888888888899999


Q ss_pred             EEEcccCCCCceEeeeeceeceeEEEEEECC
Q 010390          300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICP  330 (512)
Q Consensus       300 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  330 (512)
                      ..|..+++......+.    ...+++++|--
T Consensus       237 ~~dp~tGK~L~eiklP----t~qitsccFgG  263 (310)
T KOG4499|consen  237 KVDPTTGKILLEIKLP----TPQITSCCFGG  263 (310)
T ss_pred             EECCCCCcEEEEEEcC----CCceEEEEecC
Confidence            9998775433333333    23466777753

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.75  E-value=0.69  Score=39.82  Aligned_cols=72  Identities=26%  Similarity=0.247  Sum_probs=53.6

Q ss_pred             ECCCCCEEEEecCCCCEEEEecCCCCCCCce------ec-------cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          328 ICPNASHILSGSSDGNAYVWQVNKPQADPIK------LK-------SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       328 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~------~~-------~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      +..++++|++-+.+|.+++||+.+.+.....      +.       .....|..+.++.+| .-+++-+ +|..+.|+.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEeccc
Confidence            4467889999999999999999987653322      22       355678999999888 6666655 5789999988


Q ss_pred             CCccccc
Q 010390          395 NSRCSSM  401 (512)
Q Consensus       395 ~~~~~~~  401 (512)
                      -+.-+..
T Consensus        96 L~~W~~v  102 (219)
T PF07569_consen   96 LGCWIRV  102 (219)
T ss_pred             cceeEEe
Confidence            7665554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.68  E-value=3  Score=39.52  Aligned_cols=148  Identities=7%  Similarity=-0.020  Sum_probs=74.9

Q ss_pred             cEEEEEEeecCCEEEEEe----------ecCC-eEEEEeccCcc--ceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390          222 SITSVLYLKDEVSIATAS----------AVNS-IVKFWDTRNLK--AQITQAWPHAESSSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g----------~~dg-~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                      ....|+|.++|+.+++..          ...+ .|.+++-.++.  .....         .+.........+++.+++  
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~---------vfa~~l~~p~Gi~~~~~G--   83 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN---------VFAEELSMVTGLAVAVGG--   83 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE---------EeecCCCCccceeEecCC--
Confidence            577899999999777642          1123 67777644322  11100         111222346788998888  


Q ss_pred             EEEEecCCeEEEEEcccCC--C-CceEeeeece-----eceeEEEEEECCCCCEEEEecCC-------------------
Q 010390          289 LTASCMDHRIYLYNVLQLD--K-GPIQHFSGCR-----IESFYVKSEICPNASHILSGSSD-------------------  341 (512)
Q Consensus       289 l~~~~~dg~i~i~d~~~~~--~-~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~g~~d-------------------  341 (512)
                      |++++.....++.|.....  . .....+.+..     .......++|.|||.+.++-+..                   
T Consensus        84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~  163 (367)
T TIGR02604        84 VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG  163 (367)
T ss_pred             EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence            4444444333343442211  0 1111112111     12335568999999876654421                   


Q ss_pred             CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe
Q 010390          342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       342 g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~  383 (512)
                      |.|.-++..+...  ..+...-.....++|++++ .++++-.
T Consensus       164 g~i~r~~pdg~~~--e~~a~G~rnp~Gl~~d~~G-~l~~tdn  202 (367)
T TIGR02604       164 GGLFRYNPDGGKL--RVVAHGFQNPYGHSVDSWG-DVFFCDN  202 (367)
T ss_pred             ceEEEEecCCCeE--EEEecCcCCCccceECCCC-CEEEEcc
Confidence            3344444443332  2222112345789999988 6766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.66  E-value=7.7  Score=35.24  Aligned_cols=154  Identities=13%  Similarity=0.073  Sum_probs=74.5

Q ss_pred             cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390          220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY  299 (512)
Q Consensus       220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  299 (512)
                      ...+..+...+++.++++ +.......-||--...-..           ........|.+|.|.+++.+.+.+ ..|.|+
T Consensus       144 ~gs~~~~~r~~dG~~vav-s~~G~~~~s~~~G~~~w~~-----------~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~  210 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAV-SSRGNFYSSWDPGQTTWQP-----------HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQ  210 (302)
T ss_dssp             ---EEEEEE-TTS-EEEE-ETTSSEEEEE-TT-SS-EE-----------EE--SSS-EEEEEE-TTS-EEEEE-TTTEEE
T ss_pred             cceeEeEEECCCCcEEEE-ECcccEEEEecCCCccceE-----------EccCccceehhceecCCCCEEEEe-CCcEEE
Confidence            357888888999998877 4333344566644221111           112233569999999998766655 888888


Q ss_pred             EEEcccCCCCceEeeeeceece-eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec---cccCCeEEEEeCCCC
Q 010390          300 LYNVLQLDKGPIQHFSGCRIES-FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK---SHDGEVTAVNWCPNE  375 (512)
Q Consensus       300 i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~---~h~~~v~~v~~~~~~  375 (512)
                      .=+.......-........... .+..++|.+++...++|+. |.+ +...+.++. .....   .-...++.|.|.++.
T Consensus       211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~~~  287 (302)
T PF14870_consen  211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKT-WQKDRVGENVPSNLYRIVFVNPD  287 (302)
T ss_dssp             EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS--EE-GGGTTSSS---EEEEEETT
T ss_pred             EccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCcc-ceECccccCCCCceEEEEEcCCC
Confidence            8872110000000011111122 3678999999888887764 433 344444443 22221   224468888887654


Q ss_pred             CCeEEEEeCCCcEEEE
Q 010390          376 AGKIVTSSDDYTVRLW  391 (512)
Q Consensus       376 ~~~l~s~~~dg~i~vw  391 (512)
                        .-...+.||.|.-|
T Consensus       288 --~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  288 --KGFVLGQDGVLLRY  301 (302)
T ss_dssp             --EEEEE-STTEEEEE
T ss_pred             --ceEEECCCcEEEEe
Confidence              55566678887655

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.52  E-value=6.7  Score=36.47  Aligned_cols=112  Identities=10%  Similarity=0.091  Sum_probs=56.9

Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCcc-ceecccCCCccccccccccccCeeEEEeCCC---CCEEEEEec-C-
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLK-AQITQAWPHAESSSAKETRLHGISSLSQDSN---GVFLTASCM-D-  295 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~-d-  295 (512)
                      ..++|+|.|++..+++  ...|.|.+++..... ...... +.     ...........++++|+   ..+|++... . 
T Consensus         3 ~P~~~a~~pdG~l~v~--e~~G~i~~~~~~g~~~~~v~~~-~~-----v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~   74 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA--ERSGRIWVVDKDGSLKTPVADL-PE-----VFADGERGLLGIAFHPDFASNGYLYVYYTNAD   74 (331)
T ss_dssp             SEEEEEEETTSCEEEE--ETTTEEEEEETTTEECEEEEE--TT-----TBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred             CceEEEEeCCCcEEEE--eCCceEEEEeCCCcCcceeccc-cc-----ccccccCCcccceeccccCCCCEEEEEEEccc
Confidence            4689999999877664  369999999933322 111110 00     23344567899999994   233333332 1 


Q ss_pred             -------CeEEEEEcccCCCC------ceEeeee-ceeceeEEEEEECCCCCEEEEecCC
Q 010390          296 -------HRIYLYNVLQLDKG------PIQHFSG-CRIESFYVKSEICPNASHILSGSSD  341 (512)
Q Consensus       296 -------g~i~i~d~~~~~~~------~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~d  341 (512)
                             ..|.-|........      .+..... .........++|.|||.+.++.+..
T Consensus        75 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   75 EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence                   24444554332000      1111111 0122334569999999777665543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.34  E-value=1.2  Score=38.40  Aligned_cols=74  Identities=9%  Similarity=0.082  Sum_probs=50.0

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecc-----ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-----VAHQNAIFDLCWIKEDTNILTASGDQTIKIWD  136 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd  136 (512)
                      ..++++|.+-+.+|.+++||+.+.+......    ...++...     ......|..+..+.+|.-|++-+ +|..+.|+
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~----Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPV----SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCc----cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            3478899999999999999999876543220    00011100     04567888899988887777654 57788888


Q ss_pred             CCCC
Q 010390          137 AEKK  140 (512)
Q Consensus       137 ~~~~  140 (512)
                      ..-+
T Consensus        94 ~~L~   97 (219)
T PF07569_consen   94 PDLG   97 (219)
T ss_pred             cccc
Confidence            6544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.26  E-value=10  Score=35.84  Aligned_cols=105  Identities=13%  Similarity=0.201  Sum_probs=55.7

Q ss_pred             CCcceEEEEEecCCCcEEEEee-----------CCC-cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSD-----------EDG-YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK  118 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~  118 (512)
                      ..+.+|+|   .++|+++++-.           ..+ .|.+++-.++.-.         ......+.......+.+++.+
T Consensus        14 ~~P~~ia~---d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~---------~d~~~vfa~~l~~p~Gi~~~~   81 (367)
T TIGR02604        14 RNPIAVCF---DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK---------YDKSNVFAEELSMVTGLAVAV   81 (367)
T ss_pred             CCCceeeE---CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC---------cceeEEeecCCCCccceeEec
Confidence            34567777   99999777642           223 6777764322110         011223333334568899998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC-----e---eeecccC----cCCCEEEEEeeCCCCCeEEEEe
Q 010390          119 EDTNILTASGDQTIKIWDAEKK-----K---CTGALMG----HTGSIKSLCSHPTNSDILVSGS  170 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~-----~---~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~  170 (512)
                      ++ .++ +......++.|....     +   .+..+..    +......+.|.|++ .+.++-+
T Consensus        82 ~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G  142 (367)
T TIGR02604        82 GG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG  142 (367)
T ss_pred             CC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence            88 444 444443334454321     1   1122322    23457789999988 5555444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA02790 Kelch-like protein; Provisional

Probab=92.19  E-value=8.3  Score=38.09  Aligned_cols=60  Identities=12%  Similarity=0.000  Sum_probs=30.9

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCC
Q 010390          119 EDTNILTASGDQ-----TIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLR  181 (512)
Q Consensus       119 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~  181 (512)
                      ++..++.||.++     .+..||..+++...  .+....... +++. -++ .+.+.||.++  .+..||..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~-~~~-~iYviGG~~~~~sve~ydp~  339 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVP-ANN-KLYVVGGLPNPTSVERWFHG  339 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEE-ECC-EEEEECCcCCCCceEEEECC
Confidence            455566777543     46778887765322  222111112 2222 233 6777777543  46667654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.97  E-value=8.8  Score=34.34  Aligned_cols=239  Identities=8%  Similarity=0.047  Sum_probs=123.5

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEeCC------CC-eeeecccC-----cCCCEEEEEeeCCC-----------CCeE
Q 010390          110 AIFDLCWIKEDTNILTASGDQTIKIWDAE------KK-KCTGALMG-----HTGSIKSLCSHPTN-----------SDIL  166 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~-----h~~~v~~l~~~~~~-----------~~~l  166 (512)
                      .-+.|+++|.+.+-++...-+...+||..      .. ..+.++..     .....+.+.|+...           ...+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45679999999888888788999999986      11 22333331     22467778887432           1246


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE-EEEEEe--ecCCEEEEEeecCC
Q 010390          167 VSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI-TSVLYL--KDEVSIATASAVNS  243 (512)
Q Consensus       167 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~l~~~g~~dg  243 (512)
                      +.+++||+|.-|...-.........  ..                   .-......| ..+++.  ..+..|.++--.++
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~--~~-------------------~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g  162 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAE--IV-------------------VDASQQGNVYKGLAVGPTGGGDYLYAANFRQG  162 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccE--EE-------------------EccCCCcceeeeeEEeecCCCceEEEeccCCC
Confidence            7888999999998542221000000  00                   000001112 233333  34677777777889


Q ss_pred             eEEEEeccCccceec--ccCCCc----ccc-ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee
Q 010390          244 IVKFWDTRNLKAQIT--QAWPHA----ESS-SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG  316 (512)
Q Consensus       244 ~i~iwd~~~~~~~~~--~~~~~~----~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  316 (512)
                      +|.+||-.-.+....  ...+..    .+- ....+..--|+-..-++++..=+.+..-|.|-+||...   ..++.+..
T Consensus       163 ~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G---~l~~r~as  239 (336)
T TIGR03118       163 RIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG---QLLRRVAS  239 (336)
T ss_pred             ceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC---cEEEEecc
Confidence            999998654332211  000000    000 00000001122222233332223333447888888742   34444433


Q ss_pred             ceeceeEEEEEECC------CCCEEEEecCCCCEEEEecCCCCCCCceecccc------CCeEEEEeCC
Q 010390          317 CRIESFYVKSEICP------NASHILSGSSDGNAYVWQVNKPQADPIKLKSHD------GEVTAVNWCP  373 (512)
Q Consensus       317 ~~~~~~~~~~~~s~------~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~------~~v~~v~~~~  373 (512)
                      ...-.....++..|      .+.+|+---.||+|..||..+++.. -.+....      ..++.|+|-.
T Consensus       240 ~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~-g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       240 SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL-GQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee-eeecCCCCCeEEecCeEEeeeCC
Confidence            22222233455544      4667777667999999999877642 2232222      3467788865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.73  E-value=5  Score=30.97  Aligned_cols=112  Identities=13%  Similarity=0.104  Sum_probs=68.3

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCCCCe--------eeecccCcCCCEEEEEeeC---C-CCCeEEEEeCCCcEEEEeCC
Q 010390          114 LCWIKEDTNILTASGDQTIKIWDAEKKK--------CTGALMGHTGSIKSLCSHP---T-NSDILVSGSRDGSFAIWDLR  181 (512)
Q Consensus       114 l~~s~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~~~---~-~~~~l~s~~~dg~i~vwd~~  181 (512)
                      -.|......|+.++.-|.|.|.+.....        .+..+. -...|++|+--+   + +...|+.|+. ..|..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            3455556678888899999999876432        233333 456788876544   2 2356777665 589999998


Q ss_pred             CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee---cCCEEEEEeecCCeEEEEeccCccce
Q 010390          182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK---DEVSIATASAVNSIVKFWDTRNLKAQ  256 (512)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~g~~dg~i~iwd~~~~~~~  256 (512)
                      ........                            .-...+.++.+-.   ....++.+|+ +..|.-||....+..
T Consensus        82 ~N~d~Fyk----------------------------e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   82 NNSDLFYK----------------------------EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIF  130 (136)
T ss_pred             cCchhhhh----------------------------hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence            76544322                            2234566666533   2334555563 677777776654433

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.72  E-value=7.9  Score=36.47  Aligned_cols=173  Identities=14%  Similarity=0.086  Sum_probs=96.9

Q ss_pred             cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee-EEEeCCCCCEEEEEec
Q 010390          216 RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS-SLSQDSNGVFLTASCM  294 (512)
Q Consensus       216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~  294 (512)
                      +......+..+-..|+++.+.+-.  ...+.++++.+............     .....+.|+ .+..-..|.-|++++.
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~--g~~~~v~~L~~r~l~~rkl~~ds-----pg~~~~~Vte~l~lL~Gg~SLLv~~~  288 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRT--GSELVVALLDKRSLQIRKLVDDS-----PGDSRHQVTEQLYLLSGGFSLLVVHE  288 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEec--CCeEEEEeecccccchhhhhhcC-----CCchHHHHHHHHHHHhCceeEEEEcC
Confidence            344456778888899999998764  36788888776443222110000     000011122 2223345677888888


Q ss_pred             CCeEEEE-EcccCCCCceEeeeeceec-eeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeC
Q 010390          295 DHRIYLY-NVLQLDKGPIQHFSGCRIE-SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC  372 (512)
Q Consensus       295 dg~i~i~-d~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~  372 (512)
                      ||.|.-| |.+.............+.. ..+.-+.-..+.+-+++-+.+|++.++.....+..  .+..--..+.-+++|
T Consensus       289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l--L~~~~~~~~~~~~~S  366 (733)
T COG4590         289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL--LFERAYQAPQLVAMS  366 (733)
T ss_pred             CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce--ehhhhhcCcceeeeC
Confidence            9888765 5555443333222222111 11111222223455677777888888866544432  222223467778999


Q ss_pred             CCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          373 PNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       373 ~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      |.+ .+|++- +.|.|+++.+++....
T Consensus       367 p~~-~~Ll~e-~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         367 PNQ-AYLLSE-DQGKIRLAQLENRNPE  391 (733)
T ss_pred             ccc-chheee-cCCceEEEEecCCCCC
Confidence            998 677654 4578999999887643

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.69  E-value=7.4  Score=32.90  Aligned_cols=128  Identities=11%  Similarity=0.090  Sum_probs=68.6

Q ss_pred             CEEEEEeCCCcEEEEeCCC--CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC------cEEEE-eCCCCCCCCCccc
Q 010390          121 TNILTASGDQTIKIWDAEK--KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG------SFAIW-DLRCKSSPKSNCA  191 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg------~i~vw-d~~~~~~~~~~~~  191 (512)
                      +.|+.+...+.|.+|++.+  .+....+..- +.|..+.++..| ++++|--.+.      .+|+| +.+........  
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~--  104 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP--  104 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCc--
Confidence            4554445667899999983  3456666644 789999999988 8888875432      45553 33322111000  


Q ss_pred             cceeeecc-cccccccccccccce-ecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390          192 ESFVFSSA-VVKGAHLLSQSKRVS-RRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA  255 (512)
Q Consensus       192 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~  255 (512)
                       ....-.. .............+. ....-...+.+++..|....+++++  ++.+.+|.+.....
T Consensus       105 -v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  105 -VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTI  167 (215)
T ss_pred             -EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEE
Confidence             0000000 000000000010011 1112255788999988666666633  78999998875443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.60  E-value=6.6  Score=37.70  Aligned_cols=79  Identities=16%  Similarity=0.212  Sum_probs=53.1

Q ss_pred             eeEEEEEECCCCCEEEEecCCCCEEEEecC----------CCCCCC--c-------ee-ccccCCeEEEEeCCCC--CCe
Q 010390          321 SFYVKSEICPNASHILSGSSDGNAYVWQVN----------KPQADP--I-------KL-KSHDGEVTAVNWCPNE--AGK  378 (512)
Q Consensus       321 ~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~----------~~~~~~--~-------~~-~~h~~~v~~v~~~~~~--~~~  378 (512)
                      -.+..+..++.|..++..+.+|.+ |..+.          +++..+  +       .+ ....-.+..++|+|+.  ...
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~-vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLM-VMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeE-EEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            346678889999999999999954 43331          121100  0       01 1112256788999986  567


Q ss_pred             EEEEeCCCcEEEEeCCCCcccc
Q 010390          379 IVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       379 l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      |+.-+.|.+||+||+...+.+.
T Consensus       183 L~iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             EEEEecCcEEEEEecCCcchhh
Confidence            8888899999999998876654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.52  E-value=9.1  Score=33.59  Aligned_cols=236  Identities=11%  Similarity=0.050  Sum_probs=138.4

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390          110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN  189 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  189 (512)
                      .-..++-.|||..-+++...+.|--.|..+|+....-.+....-..|..-|++. ..++-+.. .|.-.|-++.+.... 
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~evt~f-  139 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTLEVTRF-  139 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCcccceEEe-
Confidence            445667778888888888888888888888887665555555666777888874 33332222 344444433321110 


Q ss_pred             cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC----------eEEEEeccCccceecc
Q 010390          190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS----------IVKFWDTRNLKAQITQ  259 (512)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg----------~i~iwd~~~~~~~~~~  259 (512)
                                             ...............|.+.|...++ + ..|          .|++|+.-.       
T Consensus       140 -----------------------~lp~~~a~~nlet~vfD~~G~lWFt-~-q~G~yGrLdPa~~~i~vfpaPq-------  187 (353)
T COG4257         140 -----------------------PLPLEHADANLETAVFDPWGNLWFT-G-QIGAYGRLDPARNVISVFPAPQ-------  187 (353)
T ss_pred             -----------------------ecccccCCCcccceeeCCCccEEEe-e-ccccceecCcccCceeeeccCC-------
Confidence                                   0012233456777888888887776 3 222          344443332       


Q ss_pred             cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS  339 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  339 (512)
                                    ...-+.|+..|+|..-++.-.++.|-..|........+..-...  ..-...+--+|.|+.-++-.
T Consensus       188 --------------G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~--~~gsRriwsdpig~~wittw  251 (353)
T COG4257         188 --------------GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNAL--KAGSRRIWSDPIGRAWITTW  251 (353)
T ss_pred             --------------CCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcc--cccccccccCccCcEEEecc
Confidence                          23467789999999888887888888888655432222111110  11122345567787777777


Q ss_pred             CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ..+.++.||-....-....+.+....-.++.....+ ....+--.-|.|.-+|.++.+
T Consensus       252 g~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g-rVW~sea~agai~rfdpeta~  308 (353)
T COG4257         252 GTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG-RVWLSEADAGAIGRFDPETAR  308 (353)
T ss_pred             CCceeeEeCcccccceeeeCCCCCCCcceeeeccCC-cEEeeccccCceeecCcccce
Confidence            778888888766543334444555555666665555 444444444556556655443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.46  E-value=14  Score=37.30  Aligned_cols=168  Identities=14%  Similarity=0.115  Sum_probs=83.4

Q ss_pred             cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390          220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY  299 (512)
Q Consensus       220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  299 (512)
                      ...+-.+.|+.+...+++.  .+|.+.+|++-.........        ........|....+..+|-.+++  .+|.+.
T Consensus        83 ~~~lI~mgWs~~eeLI~v~--k~g~v~Vy~~~ge~ie~~sv--------g~e~~~~~I~ec~~f~~GVavlt--~~g~v~  150 (829)
T KOG2280|consen   83 HGELIGMGWSDDEELICVQ--KDGTVHVYGLLGEFIESNSV--------GFESQMSDIVECRFFHNGVAVLT--VSGQVI  150 (829)
T ss_pred             CCCeeeecccCCceEEEEe--ccceEEEeecchhhhccccc--------ccccccCceeEEEEecCceEEEe--cCCcEE
Confidence            3478899999888777664  79999999987543322100        11222233444444445544333  344444


Q ss_pred             EEE-cccCCCCceEeeeeceeceeEEEE-EECCCC--CEEEEec-CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCC
Q 010390          300 LYN-VLQLDKGPIQHFSGCRIESFYVKS-EICPNA--SHILSGS-SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN  374 (512)
Q Consensus       300 i~d-~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~--~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~  374 (512)
                      +-+ ............+......  .+. ++.|..  ..++-.. ..+ ..++...........+..-.+.+..+..||+
T Consensus       151 ~i~~~~~~~~~~~~diP~~~~~~--~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n  227 (829)
T KOG2280|consen  151 LINGVEEPKLRKMPDIPYNELPK--SCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPN  227 (829)
T ss_pred             EEcCCCcchhhhCCCCCCccCCC--cceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCC
Confidence            333 2211111111111111110  111 122211  1111111 111 2223222222211222222356788899999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          375 EAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       375 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      . ++|+--..+|.|.+-+.+..++...+.
T Consensus       228 ~-~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  228 R-RFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             c-ceEEEEecCCcEEEEecchhhhhhccC
Confidence            8 899999999999999988887766654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=91.18  E-value=3.6  Score=39.13  Aligned_cols=83  Identities=8%  Similarity=0.115  Sum_probs=55.9

Q ss_pred             eccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEE-EEeeCCCC-----------------
Q 010390          102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKS-LCSHPTNS-----------------  163 (512)
Q Consensus       102 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~-----------------  163 (512)
                      ..+......+.+++.+|++++.++...-|.|.++|+.++..++.+++-.+.=.. +.....+.                 
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l  380 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL  380 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence            344455677999999999998888877899999999999888887765432111 11100000                 


Q ss_pred             CeEEEEeCCCcEEEEeCCCCC
Q 010390          164 DILVSGSRDGSFAIWDLRCKS  184 (512)
Q Consensus       164 ~~l~s~~~dg~i~vwd~~~~~  184 (512)
                      .+++-+-.-|.|-||+++.+.
T Consensus       381 ~LvIyaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  381 FLVIYAPRRGILEVWSMRQGP  401 (415)
T ss_pred             EEEEEeccCCeEEEEecCCCC
Confidence            123444556889999988654

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.87  E-value=9.5  Score=41.19  Aligned_cols=36  Identities=19%  Similarity=0.504  Sum_probs=29.0

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECC
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR   83 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~   83 (512)
                      ...|.......++|   +|...++|.|...|.|.+|-..
T Consensus        30 ~~~G~~~~~~~~af---D~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   30 NRHGFPSTPSALAF---DPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             eecCCCCCCcceee---ccccceEEEEEecccEEEeccc
Confidence            34455566677777   9999999999999999999754

>PHA02790 Kelch-like protein; Provisional

Probab=90.57  E-value=19  Score=35.60  Aligned_cols=62  Identities=11%  Similarity=0.087  Sum_probs=32.6

Q ss_pred             CCCEEEEEeCC--CcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCC---cEEEEeCCCC
Q 010390          119 EDTNILTASGD--QTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDG---SFAIWDLRCK  183 (512)
Q Consensus       119 ~~~~l~s~~~d--g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~  183 (512)
                      ++...+.||.+  ..+..||..+++-  +..+....... +++.. ++ .+.+.||.++   .+..||.++.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~~~-~g-~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVASI-NN-VIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEEEE-CC-EEEEecCcCCCCccEEEEeCCCC
Confidence            67777777754  3578888766532  22222111111 22222 23 6777777653   3566776543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.24  E-value=0.05  Score=50.72  Aligned_cols=249  Identities=12%  Similarity=0.144  Sum_probs=137.4

Q ss_pred             CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390          107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      |-..-....|-+.+.-++.++.+..+..|| +.++.+..+. ..+....++|..+++..++.+-..+.+.+||+.+....
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq  110 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ  110 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence            334445567888777788888999999999 4455444444 34556678898888777788888899999999855322


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                      ....                           +....-.-+.|++....++. |...|.+.+++..+.+...         
T Consensus       111 qLE~---------------------------gg~~s~sll~wsKg~~el~i-g~~~gn~viynhgtsR~ii---------  153 (615)
T KOG2247|consen  111 QLES---------------------------GGTSSKSLLAWSKGTPELVI-GNNAGNIVIYNHGTSRRII---------  153 (615)
T ss_pred             HHhc---------------------------cCcchHHHHhhccCCccccc-cccccceEEEeccchhhhh---------
Confidence            2110                           00111111567776666665 5578899999988766553         


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceecee--EEE-EEECCCCCEEEEecCCCC
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESF--YVK-SEICPNASHILSGSSDGN  343 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~-~~~s~~~~~l~~g~~dg~  343 (512)
                        ....|...++++++.+.+..+.. +.|..+.+-...+. ........+...+..  ... -.|..-|..+.+.-. |.
T Consensus       154 --v~Gkh~RRgtq~av~lEd~vil~-dcd~~L~v~~qege-ta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gK  228 (615)
T KOG2247|consen  154 --VMGKHQRRGTQIAVTLEDYVILC-DCDNTLSVTTQEGE-TASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GK  228 (615)
T ss_pred             --hhcccccceeEEEecccceeeec-CcHHHHHHhhhccc-eeeeeeccCccchhhhheeeeeccccccceeeeeee-cH
Confidence              23447778999999987754443 33433332222110 000111111111100  000 122233333332211 11


Q ss_pred             EEEE--ecCCC-CCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          344 AYVW--QVNKP-QADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       344 i~iw--~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      +++.  .+... ++.-..+..-.+.+.|+.|--||  +|.-+-+-|.|..-.+.++++...
T Consensus       229 khl~yak~nE~D~pval~fq~~~gni~cyrwylDg--~i~igf~ag~iV~iS~h~aeLgae  287 (615)
T KOG2247|consen  229 KHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDG--YILIGFDAGYIVSISAHNAELGAE  287 (615)
T ss_pred             HHHHHHhhcCCCCccceEeeecCCceeEEEEeccc--cccccccceeEEEEeccchHHHHH
Confidence            1111  11111 11112444556778899998886  555566666777777777776554

>PRK13684 Ycf48-like protein; Provisional

Probab=90.18  E-value=16  Score=34.07  Aligned_cols=153  Identities=8%  Similarity=0.091  Sum_probs=80.6

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEE-EECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSL-FDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD  129 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d  129 (512)
                      +.+.++.+   .|++.++++|. .|.+.. +|-. ++. .         ..+  ...-...++++.+.++++.++.+ ..
T Consensus       173 g~~~~i~~---~~~g~~v~~g~-~G~i~~s~~~g-g~t-W---------~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~  234 (334)
T PRK13684        173 GVVRNLRR---SPDGKYVAVSS-RGNFYSTWEPG-QTA-W---------TPH--QRNSSRRLQSMGFQPDGNLWMLA-RG  234 (334)
T ss_pred             ceEEEEEE---CCCCeEEEEeC-CceEEEEcCCC-CCe-E---------EEe--eCCCcccceeeeEcCCCCEEEEe-cC
Confidence            34566666   88887777665 554432 2211 110 0         001  12334688999999988876665 56


Q ss_pred             CcEEEEeCCCCeeeecccC----cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          130 QTIKIWDAEKKKCTGALMG----HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      |.+++=..+.+..-.....    ....+.++.+.+++ . ++.++.+|.+.. ....++.-....               
T Consensus       235 G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~-~-~~~~G~~G~v~~-S~d~G~tW~~~~---------------  296 (334)
T PRK13684        235 GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG-E-IWAGGGNGTLLV-SKDGGKTWEKDP---------------  296 (334)
T ss_pred             CEEEEccCCCCCccccccCCccccccceeeEEEcCCC-C-EEEEcCCCeEEE-eCCCCCCCeECC---------------
Confidence            7665323344432221111    12357888898865 4 445556676543 333332211100               


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDT  250 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~  250 (512)
                               ....-......+.|..++..+++ | ..|.|..|+-
T Consensus       297 ---------~~~~~~~~~~~~~~~~~~~~~~~-G-~~G~il~~~~  330 (334)
T PRK13684        297 ---------VGEEVPSNFYKIVFLDPEKGFVL-G-QRGVLLRYVG  330 (334)
T ss_pred             ---------cCCCCCcceEEEEEeCCCceEEE-C-CCceEEEecC
Confidence                     00011235777887777666554 5 5888877653

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.02  E-value=15  Score=33.40  Aligned_cols=197  Identities=9%  Similarity=-0.029  Sum_probs=93.1

Q ss_pred             cEEEEeCCCCeeeecccC------cCCCEEEEEeeCCCC-----CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          131 TIKIWDAEKKKCTGALMG------HTGSIKSLCSHPTNS-----DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~-----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      .|.+||+.+++.++++.-      ..+.++.+.+....+     ...++=+..+.|.|+|+.+++.-...........  
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p--  112 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP--  112 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS---
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec--
Confidence            688999999988776532      245678888876432     2334444456899999987654322211000000  


Q ss_pred             cccccccccccccceecccccccEEEEEEee---cCCEEEEEeecCCeEEEEeccCccceecccCCCc--ccccccccc-
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLK---DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA--ESSSAKETR-  273 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~-  273 (512)
                        ........+.   .+ .....+..++.+|   +++.+....-..  -++|.+.+............  .......+. 
T Consensus       113 --~~~~~~i~g~---~~-~~~dg~~gial~~~~~d~r~LYf~~lss--~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k  184 (287)
T PF03022_consen  113 --DAGPFTIGGE---SF-QWPDGIFGIALSPISPDGRWLYFHPLSS--RKLYRVPTSVLRDPSLSDAQALASQVQDLGDK  184 (287)
T ss_dssp             --SSEEEEETTE---EE-EETTSEEEEEE-TTSTTS-EEEEEETT---SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-
T ss_pred             --cccceeccCc---eE-ecCCCccccccCCCCCCccEEEEEeCCC--CcEEEEEHHHhhCccccccccccccceecccc
Confidence              0000000000   11 1122377777765   565666543222  23333332111100000000  000011122 


Q ss_pred             ccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC-ceEeeee-ceeceeEEEEEECC--CCCEEEE
Q 010390          274 LHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG-PIQHFSG-CRIESFYVKSEICP--NASHILS  337 (512)
Q Consensus       274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~s~--~~~~l~~  337 (512)
                      ......++++++|.++++--..+.|..|+....-.. ....+.. ...-.+...+.+.+  +|.+.+.
T Consensus       185 ~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~  252 (287)
T PF03022_consen  185 GSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL  252 (287)
T ss_dssp             --SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred             CCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence            235678899999999988889999999997642111 2222222 22134556677776  5544433

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.87  E-value=1.6  Score=44.08  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=46.8

Q ss_pred             CCCcEEEEeeCCCcEEEEECCCCC---Cc-ccc-ccccccccceeccc--------cCCCcEEEEEEec----CCCEEEE
Q 010390           63 KNSHIFAVSDEDGYVSLFDSRRKL---PS-FAC-HRENAEKARISDWV--------AHQNAIFDLCWIK----EDTNILT  125 (512)
Q Consensus        63 ~~~~~latg~~dg~i~iwd~~~~~---~~-~~~-~~~~~~~~~~~~~~--------~h~~~V~~l~~s~----~~~~l~s  125 (512)
                      ++...++++..||.+...+.....   .. ... +....-...+..+.        .-.+.+..++.+.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            467788888999999888866411   10 000 00000001111111        1134566666666    7789999


Q ss_pred             EeCCCcEEEEeCCCCeeeecc
Q 010390          126 ASGDQTIKIWDAEKKKCTGAL  146 (512)
Q Consensus       126 ~~~dg~i~iwd~~~~~~~~~~  146 (512)
                      .+.|+++|+||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.19  E-value=19  Score=34.35  Aligned_cols=112  Identities=8%  Similarity=0.019  Sum_probs=60.8

Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC--
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA--  354 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~--  354 (512)
                      ...+...+++.+++++.....++-||-..    ..-..........+..+.+.+++.+++++. +|.+ ++....+..  
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~----~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l-~~S~d~G~~~~  314 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ----PYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGL-YVSKGTGLTEE  314 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCC----cceEEecCCCccceeeeeEcCCCCEEEEeC-CceE-EEecCCCCccc
Confidence            45566778888777775554444455211    100111111223466788889998887774 4544 333333321  


Q ss_pred             --CCceecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          355 --DPIKLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       355 --~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                        .......  -...++++.|.+++  .++.++.+|.+.... +.|+
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~--~~~a~G~~G~v~~s~-D~G~  358 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKK--EAWAAGGSGILLRST-DGGK  358 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCC--cEEEEECCCcEEEeC-CCCc
Confidence              1111111  12358999999876  456666778776664 4444

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.10  E-value=1.9  Score=24.92  Aligned_cols=30  Identities=10%  Similarity=0.196  Sum_probs=20.2

Q ss_pred             cCCCcEEEEEEecCCCEEEE-EeCC--CcEEEE
Q 010390          106 AHQNAIFDLCWIKEDTNILT-ASGD--QTIKIW  135 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s-~~~d--g~i~iw  135 (512)
                      .....-....|+|||++|+- +..+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34557788999999999984 4445  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.81  E-value=9.3  Score=29.53  Aligned_cols=112  Identities=13%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCC------CCceEeeeeceeceeEEEEE---ECC--CCCEEEEecCCCCEEEEe
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLD------KGPIQHFSGCRIESFYVKSE---ICP--NASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~---~s~--~~~~l~~g~~dg~i~iw~  348 (512)
                      -.|+.....|++++.-|+|.|++.....      ...+..+.   ....+++++   +.|  +...|+.|+. ..+..||
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN---in~~italaaG~l~~~~~~D~LliGt~-t~llaYD   79 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN---INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD   79 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE---CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence            3455566678889999999999865432      11222222   223344443   332  3566777775 4599999


Q ss_pred             cCCCCCCCceeccccCCeEEEEeCCCC--CCeEEEEeCCCcEEEEeCCCCc
Q 010390          349 VNKPQADPIKLKSHDGEVTAVNWCPNE--AGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +......  .++.-.+.|.++.+-.-+  +.-|+..+.+..|.-+|.+..+
T Consensus        80 V~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   80 VENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             cccCchh--hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            9877653  333344667777763211  1345555556677777766544

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.40  E-value=9.3  Score=41.17  Aligned_cols=140  Identities=9%  Similarity=0.022  Sum_probs=82.3

Q ss_pred             cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe--------CCCCCEEEEEecCCeEEEEEcccCCCCc-e
Q 010390          241 VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ--------DSNGVFLTASCMDHRIYLYNVLQLDKGP-I  311 (512)
Q Consensus       241 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~  311 (512)
                      .|..+.+|+.++......           ..+..+.|..+..        -|.=+++++-..--.|.++-+...+... .
T Consensus        97 iDn~L~lWny~~~~e~~~-----------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~  165 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAE-----------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL  165 (1311)
T ss_pred             eCCeEEEEEcCCCCcccc-----------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc
Confidence            489999999998554432           3333334444433        2222444444455566666553322111 1


Q ss_pred             ----EeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC----CCC----C----------------CCceecccc
Q 010390          312 ----QHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN----KPQ----A----------------DPIKLKSHD  363 (512)
Q Consensus       312 ----~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~----~~~----~----------------~~~~~~~h~  363 (512)
                          ..+.-......+.++....+|+.+++|-++   .+|.+.    .+.    +                .......+.
T Consensus       166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~  242 (1311)
T KOG1900|consen  166 SIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK  242 (1311)
T ss_pred             cccccceeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence                111111223457778878888888777654   444432    110    0                001112567


Q ss_pred             CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      ++|..+...... +++.+-+..|+|.+||+..
T Consensus       243 dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  243 DPIRQITIDNSR-NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence            799999998877 8999999999999999987

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.99  E-value=22  Score=32.94  Aligned_cols=173  Identities=13%  Similarity=0.143  Sum_probs=88.7

Q ss_pred             ccEEEEEEeecCCEEEEEeecCCe------EEEEeccCccc-----eecccCCCccc-cccccccccCeeEEEeCCCCCE
Q 010390          221 MSITSVLYLKDEVSIATASAVNSI------VKFWDTRNLKA-----QITQAWPHAES-SSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       221 ~~v~~~~~~~~~~~l~~~g~~dg~------i~iwd~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                      +.+..+.+.+++..+++.+ ++|.      +..+++.....     ......+.... -..+........+|++.+++.+
T Consensus        20 GGlSgl~~~~~~~~~~avS-D~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVS-DRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEE-CCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            4678899986555555544 5676      65555554110     00000000000 0001111224567888788888


Q ss_pred             EEEEecC------CeEEEEEcccCCCCce---Eee-------eeceeceeEEEEEECCCCCEEEEecC-----CC--C--
Q 010390          289 LTASCMD------HRIYLYNVLQLDKGPI---QHF-------SGCRIESFYVKSEICPNASHILSGSS-----DG--N--  343 (512)
Q Consensus       289 l~~~~~d------g~i~i~d~~~~~~~~~---~~~-------~~~~~~~~~~~~~~s~~~~~l~~g~~-----dg--~--  343 (512)
                      +++.-.+      ..|+.++........+   ..+       .....+.-.-.++++|+|+.|+++..     |+  .  
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            8887777      7888888652111111   011       22233445667999999996655432     22  1  


Q ss_pred             -----EEEEecCCC--CCCCc----eecc-----ccCCeEEEEeCCCCCCeEEEE-----eCCCcEEEEeCCC
Q 010390          344 -----AYVWQVNKP--QADPI----KLKS-----HDGEVTAVNWCPNEAGKIVTS-----SDDYTVRLWSLEN  395 (512)
Q Consensus       344 -----i~iw~~~~~--~~~~~----~~~~-----h~~~v~~v~~~~~~~~~l~s~-----~~dg~i~vwd~~~  395 (512)
                           ++|+.+...  .....    .+..     ....|+.+.+-+++ ++|+-=     +....++|+.+.-
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLvLER~~~~~~~~~~ri~~v~l  250 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLVLERDFSPGTGNYKRIYRVDL  250 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEEEEccCCCCccceEEEEEEEc
Confidence                 556554432  21111    1121     34678999999998 555431     1334555655543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=87.86  E-value=26  Score=33.49  Aligned_cols=110  Identities=9%  Similarity=0.032  Sum_probs=62.7

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-----eeecccC--cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-----CTGALMG--HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL  180 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  180 (512)
                      ...++++.|.+++..++++ .+|.+ +|....++     .......  -...+.++.|.+++ . ++.++.+|.+.... 
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~v~~s~-  354 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKK-E-AWAAGGSGILLRST-  354 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCC-c-EEEEECCCcEEEeC-
Confidence            4578999999888877665 56654 44444553     1222221  12358889998765 4 55556677766653 


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEE
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW  248 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw  248 (512)
                      ..++.-...                        .....-...++.+.|.++++.+++ | .+|.|.-|
T Consensus       355 D~G~tW~~~------------------------~~~~~~~~~ly~v~f~~~~~g~~~-G-~~G~il~~  396 (398)
T PLN00033        355 DGGKSWKRD------------------------KGADNIAANLYSVKFFDDKKGFVL-G-NDGVLLRY  396 (398)
T ss_pred             CCCcceeEc------------------------cccCCCCcceeEEEEcCCCceEEE-e-CCcEEEEe
Confidence            222211100                        000122346788998877766665 5 68877654

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=87.44  E-value=43  Score=35.59  Aligned_cols=69  Identities=22%  Similarity=0.298  Sum_probs=43.9

Q ss_pred             CCcEEEEEEecCC------CEEEEEeCCCcEEEEeCCCCeeeecc--cCcCCCEEEEEeeCC---C-----CCeEEEEeC
Q 010390          108 QNAIFDLCWIKED------TNILTASGDQTIKIWDAEKKKCTGAL--MGHTGSIKSLCSHPT---N-----SDILVSGSR  171 (512)
Q Consensus       108 ~~~V~~l~~s~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~---~-----~~~l~s~~~  171 (512)
                      +..|.|+++.++.      ++++.|+.|+++++..+.-..++..+  ++-..++.++.+-+.   +     .-+|.+|-.
T Consensus       582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~  661 (1205)
T KOG1898|consen  582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR  661 (1205)
T ss_pred             ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence            4678888887754      67999999999999998765555444  334445555554332   2     124556666


Q ss_pred             CCcEE
Q 010390          172 DGSFA  176 (512)
Q Consensus       172 dg~i~  176 (512)
                      +|.+.
T Consensus       662 NGvll  666 (1205)
T KOG1898|consen  662 NGVLL  666 (1205)
T ss_pred             ccEEE
Confidence            66543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.41  E-value=15  Score=37.01  Aligned_cols=68  Identities=12%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR  181 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  181 (512)
                      ...++++.-+|.++.++.+..||.|+++++.....  +.+..   .+-..+.|...|   |++...|..+.-|.-+
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tnhg---l~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTNHG---LVTATSDRRALAWKED   83 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeeccc---eEEEeccchhheeecc
Confidence            45678888889999999999999999999865543  33322   233445565433   7777778888888643

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.32  E-value=22  Score=32.01  Aligned_cols=228  Identities=11%  Similarity=0.073  Sum_probs=112.8

Q ss_pred             CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec
Q 010390          152 SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD  231 (512)
Q Consensus       152 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  231 (512)
                      .-+.|+++|.+ .+.++...-+...+||.......-..  +.+........             -.......+.+.|+..
T Consensus        24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~--~~L~vtiP~~~-------------~~~~~~~PTGiVfN~~   87 (336)
T TIGR03118        24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQ--DPLVVVIPAPP-------------PLAAEGTPTGQVFNGS   87 (336)
T ss_pred             ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCc--cceEEEecCCC-------------CCCCCCCccEEEEeCC
Confidence            45789999987 77777777789999998732211100  00110000000             0011234566666533


Q ss_pred             CCE------------EEEEeecCCeEEEEeccCccc---eecccCCCccccccccccccCeeEEEeC--CCCCEEEEEe-
Q 010390          232 EVS------------IATASAVNSIVKFWDTRNLKA---QITQAWPHAESSSAKETRLHGISSLSQD--SNGVFLTASC-  293 (512)
Q Consensus       232 ~~~------------l~~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~-  293 (512)
                      ...            ++. +++||+|.-|...-...   .......       ......-...+++.  ..+.+|+.+. 
T Consensus        88 ~~F~vt~~g~~~~a~Fif-~tEdGTisaW~p~v~~t~~~~~~~~~d-------~s~~gavYkGLAi~~~~~~~~LYaadF  159 (336)
T TIGR03118        88 DTFVVSGEGITGPSRFLF-VTEDGTLSGWAPALGTTRMTRAEIVVD-------ASQQGNVYKGLAVGPTGGGDYLYAANF  159 (336)
T ss_pred             CceEEcCCCcccceeEEE-EeCCceEEeecCcCCcccccccEEEEc-------cCCCcceeeeeEEeecCCCceEEEecc
Confidence            221            333 44899999998543222   0000000       00011112334444  3456666665 


Q ss_pred             cCCeEEEEEcccCCCCceEeee--------------eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          294 MDHRIYLYNVLQLDKGPIQHFS--------------GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       294 ~dg~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      ..++|.+||-.-.....-..+.              .....-+|+=..-.++.+.=+.|-.-|.|-+||+...-.....-
T Consensus       160 ~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as  239 (336)
T TIGR03118       160 RQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS  239 (336)
T ss_pred             CCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc
Confidence            6789999985321100000000              00011112212223333333445556789999987543211112


Q ss_pred             ccccCCeEEEEeCCC-----CCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          360 KSHDGEVTAVNWCPN-----EAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       360 ~~h~~~v~~v~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      .+.-..-+.|+..|-     ...+|+--=-||+|..+|..+++.+..+.
T Consensus       240 ~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       240 SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence            233345667776552     11566665679999999999888665533

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.06  E-value=14  Score=35.57  Aligned_cols=121  Identities=12%  Similarity=0.086  Sum_probs=70.1

Q ss_pred             ceeccccCCCcEEEEEEecCCC-------EEEEEeCCCcEEEEeCCC-CeeeecccCcCCCEEEEEeeC---CCCCeEEE
Q 010390          100 RISDWVAHQNAIFDLCWIKEDT-------NILTASGDQTIKIWDAEK-KKCTGALMGHTGSIKSLCSHP---TNSDILVS  168 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~-------~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~---~~~~~l~s  168 (512)
                      .+..+.-|...  -+.|.|+.+       .-+.|-.+..|.-.|.+- |..+.... ....++.-.|+.   ....+++.
T Consensus       502 vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~  578 (776)
T COG5167         502 VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAA  578 (776)
T ss_pred             eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhccccccccccccccCceEEE
Confidence            36666666554  567777421       233344555566566543 21121111 122222222322   11258999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEE
Q 010390          169 GSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW  248 (512)
Q Consensus       169 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw  248 (512)
                      ++..|-|++||--......                           .+.+....|..+....+|..++++|  ...+.+-
T Consensus       579 as~kGDirLyDRig~rAKt---------------------------alP~lG~aIk~idvta~Gk~ilaTC--k~yllL~  629 (776)
T COG5167         579 ASRKGDIRLYDRIGKRAKT---------------------------ALPGLGDAIKHIDVTANGKHILATC--KNYLLLT  629 (776)
T ss_pred             ecCCCceeeehhhcchhhh---------------------------cCcccccceeeeEeecCCcEEEEee--cceEEEE
Confidence            9999999999954322211                           2334456788899999999999876  5678887


Q ss_pred             eccC
Q 010390          249 DTRN  252 (512)
Q Consensus       249 d~~~  252 (512)
                      |++-
T Consensus       630 d~~i  633 (776)
T COG5167         630 DVPI  633 (776)
T ss_pred             eccc
Confidence            7663

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.96  E-value=14  Score=39.89  Aligned_cols=33  Identities=12%  Similarity=0.112  Sum_probs=26.9

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK  141 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  141 (512)
                      .....++|+|....++.+...|.|+++-...-+
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceE
Confidence            455678899999999999999999999754433

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.94  E-value=7.3  Score=32.17  Aligned_cols=31  Identities=3%  Similarity=0.262  Sum_probs=24.7

Q ss_pred             CcEEEEEEecCC------CEEEEEeCCCcEEEEeCCC
Q 010390          109 NAIFDLCWIKED------TNILTASGDQTIKIWDAEK  139 (512)
Q Consensus       109 ~~V~~l~~s~~~------~~l~s~~~dg~i~iwd~~~  139 (512)
                      ..|.+++|||.|      ..|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            379999999933      4677888899999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.69  E-value=28  Score=32.72  Aligned_cols=205  Identities=10%  Similarity=0.075  Sum_probs=103.1

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEee----CCCCC--eEEEEeCC---CcEEEEeCCCCCCCCC
Q 010390          118 KEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH----PTNSD--ILVSGSRD---GSFAIWDLRCKSSPKS  188 (512)
Q Consensus       118 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~----~~~~~--~l~s~~~d---g~i~vwd~~~~~~~~~  188 (512)
                      |...+|+....++-+.+||+. |+.++.+.  .+.++.+..-    -.+..  ++++...+   ..|++|.+....... 
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-  141 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-  141 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-
Confidence            355677878888889999986 44555553  2344444432    12212  23333332   469999876321100 


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEEee---cCCEEEEEeecCCeEEEEeccCc-c--ceecccCC
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK---DEVSIATASAVNSIVKFWDTRNL-K--AQITQAWP  262 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~g~~dg~i~iwd~~~~-~--~~~~~~~~  262 (512)
                             ...           .............++.+|...   ++...+.....+|.+..|.+... .  ......  
T Consensus       142 -------~~v-----------~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lV--  201 (381)
T PF02333_consen  142 -------TDV-----------TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLV--  201 (381)
T ss_dssp             -------EE------------CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEE--
T ss_pred             -------eEc-----------CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEE--
Confidence                   000           000000111123467777643   45666666778999988887532 1  111110  


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc---eEeeeeceeceeEEEEEE--CCCC-CEE-
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP---IQHFSGCRIESFYVKSEI--CPNA-SHI-  335 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~--s~~~-~~l-  335 (512)
                            ....-...+..+..+.....|+.+-.+.-|+-|+........   +....+.....-+-.+++  ..++ .|| 
T Consensus       202 ------R~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLi  275 (381)
T PF02333_consen  202 ------REFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLI  275 (381)
T ss_dssp             ------EEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEE
T ss_pred             ------EEecCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEE
Confidence                  112223468889999888899999999888888875432221   111122222222333433  3443 344 


Q ss_pred             EEecCCCCEEEEecCCC
Q 010390          336 LSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       336 ~~g~~dg~i~iw~~~~~  352 (512)
                      ++.-.+++..||+....
T Consensus       276 vSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  276 VSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEGGGTEEEEEESSTT
T ss_pred             EEcCCCCeEEEEecCCC
Confidence            55555778999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.57  E-value=11  Score=33.88  Aligned_cols=94  Identities=14%  Similarity=0.214  Sum_probs=56.3

Q ss_pred             CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe------CCCcEEEEeCCCCeeeeccc
Q 010390           74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS------GDQTIKIWDAEKKKCTGALM  147 (512)
Q Consensus        74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~  147 (512)
                      ...|++||..+.+-             ...-.+-.+.|+++.|..+.+.++.|.      ....+..||+.+..-...-.
T Consensus        15 C~~lC~yd~~~~qW-------------~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~   81 (281)
T PF12768_consen   15 CPGLCLYDTDNSQW-------------SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG   81 (281)
T ss_pred             CCEEEEEECCCCEe-------------ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence            45699999876543             111123457899999986666666654      35568889987765322211


Q ss_pred             ----CcCCCEEEEEeeCCCC-CeEEEEe-CCC--cEEEEeC
Q 010390          148 ----GHTGSIKSLCSHPTNS-DILVSGS-RDG--SFAIWDL  180 (512)
Q Consensus       148 ----~h~~~v~~l~~~~~~~-~~l~s~~-~dg--~i~vwd~  180 (512)
                          .-.++|..+.+...+. ++.++|. .+|  .|..||=
T Consensus        82 ~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   82 GSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             cccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence                1247888888754443 3444444 333  4555653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.55  E-value=46  Score=34.99  Aligned_cols=69  Identities=7%  Similarity=0.015  Sum_probs=46.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCC--------EEEEEeeCC---------------CCCeEEEEeCCCcE
Q 010390          119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGS--------IKSLCSHPT---------------NSDILVSGSRDGSF  175 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~--------v~~l~~~~~---------------~~~~l~s~~~dg~i  175 (512)
                      .+..|+.++.++.|.-.|..+|+.+..+......        ...+.+...               ....++.++.|+.|
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            3557777888899999999999888776532210        122333211               12478888889999


Q ss_pred             EEEeCCCCCCCC
Q 010390          176 AIWDLRCKSSPK  187 (512)
Q Consensus       176 ~vwd~~~~~~~~  187 (512)
                      .-.|.++++...
T Consensus       273 iALDA~TGk~~W  284 (764)
T TIGR03074       273 IALDADTGKLCE  284 (764)
T ss_pred             EEEECCCCCEEE
Confidence            999998887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.33  E-value=2.2  Score=43.07  Aligned_cols=37  Identities=27%  Similarity=0.505  Sum_probs=27.4

Q ss_pred             CCeEEEEeCC----CCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          364 GEVTAVNWCP----NEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       364 ~~v~~v~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      +.+..++.+.    +. .+|++.+.|+++|+||+.+++++..
T Consensus       215 ~~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  215 SVAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             --EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTCEEEE
T ss_pred             CccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCeEEEE
Confidence            3455666665    44 7999999999999999999999554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.57  E-value=36  Score=33.11  Aligned_cols=116  Identities=10%  Similarity=0.095  Sum_probs=62.0

Q ss_pred             cccEEEEEEeecCCEEEEEeec-CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC------CEEEEE
Q 010390          220 SMSITSVLYLKDEVSIATASAV-NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG------VFLTAS  292 (512)
Q Consensus       220 ~~~v~~~~~~~~~~~l~~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~  292 (512)
                      -...+.|+|.|++..+++ - . .|.|++++..+.........+..    ...........|+++|+-      .+|++.
T Consensus        29 L~~Pw~maflPDG~llVt-E-R~~G~I~~v~~~~~~~~~~~~l~~v----~~~~ge~GLlglal~PdF~~~~~n~~lYvs  102 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVT-E-RATGKILRVNPETGEVKVVFTLPEI----VNDAQHNGLLGLALHPDFMQEKGNPYVYIS  102 (454)
T ss_pred             CCCceEEEEcCCCeEEEE-E-ecCCEEEEEeCCCCceeeeecCCce----eccCCCCceeeEEECCCccccCCCcEEEEE
Confidence            446889999999976665 2 4 59999998665432211111110    011135778999999874      244444


Q ss_pred             e----------cCCeEEEEEcccCCC---CceEeeeece--eceeEEEEEECCCCCEEEEecCC
Q 010390          293 C----------MDHRIYLYNVLQLDK---GPIQHFSGCR--IESFYVKSEICPNASHILSGSSD  341 (512)
Q Consensus       293 ~----------~dg~i~i~d~~~~~~---~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~d  341 (512)
                      .          ....|.-|.+.....   .....+....  ....-..++|.|||.+.++.++.
T Consensus       103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence            2          123455565532111   1111121111  11223468899999877655543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=85.56  E-value=30  Score=33.53  Aligned_cols=31  Identities=16%  Similarity=0.183  Sum_probs=25.4

Q ss_pred             cCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          275 HGISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       275 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                      ..|..+...+..+.|++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3499999999889999999999999999965

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.13  E-value=7.8  Score=32.00  Aligned_cols=32  Identities=13%  Similarity=0.342  Sum_probs=26.7

Q ss_pred             CeEEEEeCCCC-----CCeEEEEeCCCcEEEEeCCCC
Q 010390          365 EVTAVNWCPNE-----AGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       365 ~v~~v~~~~~~-----~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      .|.+++|||.|     .-+|++...+|.|.||.-...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            78999999954     247999999999999997754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=84.99  E-value=37  Score=32.57  Aligned_cols=126  Identities=17%  Similarity=0.180  Sum_probs=76.4

Q ss_pred             ccCCcceEEEEEecCC-C-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC--CCcEEEEEEec----C-
Q 010390           49 EETPPLAVSFCKTSKN-S-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH--QNAIFDLCWIK----E-  119 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~-~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~s~----~-  119 (512)
                      -..||..|.+-.|.+. . ..||+ -.-..+.||.+.........    .....+.....|  ......+++-|    . 
T Consensus        70 l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~----g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~  144 (418)
T PF14727_consen   70 LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH----GNQYQLELIYEHSLQRTAYNMCCGPFGGVKG  144 (418)
T ss_pred             cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc----CcEEEEEEEEEEecccceeEEEEEECCCCCC
Confidence            4589999999888443 3 35665 55678999988432211000    111122223333  23444455444    2 


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR  181 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  181 (512)
                      .++|..-+.||.+.+++-+.-...+.+.. ---.-.+.|.+.. ..|++++.+..|..|...
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHH
Confidence            36788889999999999665544444433 2222346777766 789999988899988764

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=84.94  E-value=65  Score=35.31  Aligned_cols=27  Identities=11%  Similarity=-0.016  Sum_probs=17.9

Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTR  251 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~  251 (512)
                      ....++++.+|...++   +...|++.|..
T Consensus       476 ~PkGIa~dk~g~lYfa---D~t~IR~iD~~  502 (1899)
T KOG4659|consen  476 FPKGIAFDKMGNLYFA---DGTRIRVIDTT  502 (1899)
T ss_pred             cCCceeEccCCcEEEe---cccEEEEeccC
Confidence            4556788887776665   34567777755

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=84.65  E-value=49  Score=33.64  Aligned_cols=89  Identities=15%  Similarity=0.157  Sum_probs=50.1

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCCCc-EEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDEDGY-VSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      +..|.|+.......+.++.++|-.++. -++-.+..+...........+......++ -.+.|..+.|.++++.+++...
T Consensus        71 t~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~  149 (670)
T PF10395_consen   71 TTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLE  149 (670)
T ss_pred             CceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEE-cccceEEEEEecCCCEEEEEEc
Confidence            445666666554443456666644433 34433333211000000001111122222 3678999999999999999999


Q ss_pred             CCcEEEEeCCC
Q 010390          129 DQTIKIWDAEK  139 (512)
Q Consensus       129 dg~i~iwd~~~  139 (512)
                      +|.|.+||...
T Consensus       150 nG~i~~~d~~~  160 (670)
T PF10395_consen  150 NGSIQIYDFSE  160 (670)
T ss_pred             CCcEEEEeccc
Confidence            99999999943

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=84.46  E-value=23  Score=29.78  Aligned_cols=128  Identities=13%  Similarity=0.081  Sum_probs=60.2

Q ss_pred             eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc--eEeeee
Q 010390          239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP--IQHFSG  316 (512)
Q Consensus       239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~  316 (512)
                      .-.+|.-..+|.++.+..-....         ++   .-..+  ..|+..|+.+.....++.-|..+.....  .....+
T Consensus       107 Tw~egvaf~~d~~t~~~lg~~~y---------~G---eGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g  172 (262)
T COG3823         107 TWKEGVAFKYDADTLEELGRFSY---------EG---EGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDG  172 (262)
T ss_pred             EeccceeEEEChHHhhhhccccc---------CC---cceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECC
Confidence            44688889999998776654322         11   12222  2355557776666666666654322211  111112


Q ss_pred             ceeceeEEEEEECCCCCEEEEe----------cCCCCEEEE-ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEE
Q 010390          317 CRIESFYVKSEICPNASHILSG----------SSDGNAYVW-QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       317 ~~~~~~~~~~~~s~~~~~l~~g----------~~dg~i~iw-~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~  382 (512)
                      .++.. +.-+.| -+|...|-.          -..|.|.-| |+..-......-..|..-.+.+++.|++.+++++|
T Consensus       173 ~pv~~-LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         173 VPVSK-LNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             eeccc-ccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            11110 111111 122222111          112333333 44332222222334566788999999886666666

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=84.40  E-value=4.3  Score=23.39  Aligned_cols=29  Identities=17%  Similarity=0.021  Sum_probs=21.9

Q ss_pred             cccEEEEEEeecCCEEEEEeecC--CeEEEE
Q 010390          220 SMSITSVLYLKDEVSIATASAVN--SIVKFW  248 (512)
Q Consensus       220 ~~~v~~~~~~~~~~~l~~~g~~d--g~i~iw  248 (512)
                      ...-....|+|||+.++.++..+  |...||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34677889999999999988777  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.33  E-value=4.4  Score=23.69  Aligned_cols=31  Identities=16%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             cCCCEEEEEe-CCCcEEEEeCCCCeeeecccC
Q 010390          118 KEDTNILTAS-GDQTIKIWDAEKKKCTGALMG  148 (512)
Q Consensus       118 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~  148 (512)
                      |++++|+++. .+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4677666544 578999999988887777654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=83.90  E-value=33  Score=35.11  Aligned_cols=71  Identities=15%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             EEEECCCCCEEEEecCCC-----CEEEEecCCCCCCCc-eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          325 KSEICPNASHILSGSSDG-----NAYVWQVNKPQADPI-KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       325 ~~~~s~~~~~l~~g~~dg-----~i~iw~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      .+.|-|+|..+++-+.||     .|.++.-+.-+.-.. .-.+.+..+..++|+-.. ..+ .....+.|++|-..+-.
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s-~vl-av~~~n~~~lwttkNyh  327 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS-TVL-AVAEGNLLKLWTTKNYH  327 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH-HHH-HHhhcceEEEEEccceE
Confidence            488999999999877554     366665543322111 122344567778887654 333 34456689999877654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=83.81  E-value=28  Score=33.77  Aligned_cols=108  Identities=8%  Similarity=0.000  Sum_probs=59.1

Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec---eeceeEEEEEECCCC------CEEEEec-------
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC---RIESFYVKSEICPNA------SHILSGS-------  339 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~------~~l~~g~-------  339 (512)
                      ....|+|.||+++|++--..|.|++++-.......+..+...   ....-...++++|+-      .+|....       
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~  110 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK  110 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence            467899999998777665579999998544322222222111   113456789999874      2443321       


Q ss_pred             ---CCCCEEEEecCCCC----CCCceec------cccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390          340 ---SDGNAYVWQVNKPQ----ADPIKLK------SHDGEVTAVNWCPNEAGKIVTSSDDY  386 (512)
Q Consensus       340 ---~dg~i~iw~~~~~~----~~~~~~~------~h~~~v~~v~~~~~~~~~l~s~~~dg  386 (512)
                         ....|.-|.+....    .....+.      .|.  -..|+|.||+ .++++.++.+
T Consensus       111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG-~LYVs~GD~g  167 (454)
T TIGR03606       111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDG-KIYYTIGEQG  167 (454)
T ss_pred             CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCC-cEEEEECCCC
Confidence               12234445543211    0111121      232  3467799999 6777666543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=83.74  E-value=5.3  Score=37.53  Aligned_cols=176  Identities=13%  Similarity=0.089  Sum_probs=89.0

Q ss_pred             eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390          143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS  222 (512)
Q Consensus       143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (512)
                      +..+......|..+-..|++ +.+..-+. ..+.++++.+.........+..              .+.       ....
T Consensus       213 i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~ds--------------pg~-------~~~~  269 (733)
T COG4590         213 IRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDS--------------PGD-------SRHQ  269 (733)
T ss_pred             hhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcC--------------CCc-------hHHH
Confidence            34455555678888899998 66655544 5788888875543221100000              000       0001


Q ss_pred             EE-EEEEeecCCEEEEEeecCCeEEEE-eccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEE
Q 010390          223 IT-SVLYLKDEVSIATASAVNSIVKFW-DTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYL  300 (512)
Q Consensus       223 v~-~~~~~~~~~~l~~~g~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  300 (512)
                      |+ .+.....+..+++ +..||.|.-| |.+........   +   .........++..+.-..+.+-+++-+..|++.+
T Consensus       270 Vte~l~lL~Gg~SLLv-~~~dG~vsQWFdvr~~~~p~l~---h---~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~  342 (733)
T COG4590         270 VTEQLYLLSGGFSLLV-VHEDGLVSQWFDVRRDGQPHLN---H---IRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQS  342 (733)
T ss_pred             HHHHHHHHhCceeEEE-EcCCCceeeeeeeecCCCCcce---e---eeccccCcccceeeccccccceEEEEcCCCceee
Confidence            11 1111223444554 5578888766 55543221100   0   0011111223333444444556777777888887


Q ss_pred             EEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      +.-............     ....-+++||.+.++++-. .|.|+++.+++...
T Consensus       343 f~st~~~~lL~~~~~-----~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P  390 (733)
T COG4590         343 FYSTSEKLLLFERAY-----QAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNP  390 (733)
T ss_pred             eecccCcceehhhhh-----cCcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence            764322111111111     1123378999999998765 46699999887654

>PRK13684 Ycf48-like protein; Provisional

Probab=83.48  E-value=39  Score=31.53  Aligned_cols=156  Identities=8%  Similarity=-0.041  Sum_probs=80.7

Q ss_pred             cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390          220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY  299 (512)
Q Consensus       220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  299 (512)
                      ...+.++.+.+++..+++ | ..|.+..- .+.+......         ........++++.+.++++.++++ ..|.++
T Consensus       172 ~g~~~~i~~~~~g~~v~~-g-~~G~i~~s-~~~gg~tW~~---------~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~  238 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAV-S-SRGNFYST-WEPGQTAWTP---------HQRNSSRRLQSMGFQPDGNLWMLA-RGGQIR  238 (334)
T ss_pred             cceEEEEEECCCCeEEEE-e-CCceEEEE-cCCCCCeEEE---------eeCCCcccceeeeEcCCCCEEEEe-cCCEEE
Confidence            346788888888765544 5 46655432 1111111111         111223568899999998877765 557665


Q ss_pred             EEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec---cccCCeEEEEeCCCCC
Q 010390          300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK---SHDGEVTAVNWCPNEA  376 (512)
Q Consensus       300 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~  376 (512)
                      +=....+..-.............+..+.+.+++..+++| .+|.+. ...+.++. .....   .-....+.+.|..++ 
T Consensus       239 ~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~-  314 (334)
T PRK13684        239 FNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT-WEKDPVGEEVPSNFYKIVFLDPE-  314 (334)
T ss_pred             EccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC-CeECCcCCCCCcceEEEEEeCCC-
Confidence            321111111000011100011235567888887766655 466444 34443332 12221   122357788887665 


Q ss_pred             CeEEEEeCCCcEEEEeC
Q 010390          377 GKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       377 ~~l~s~~~dg~i~vwd~  393 (512)
                      .. +..+..|.|..|+-
T Consensus       315 ~~-~~~G~~G~il~~~~  330 (334)
T PRK13684        315 KG-FVLGQRGVLLRYVG  330 (334)
T ss_pred             ce-EEECCCceEEEecC
Confidence            44 55667888887764

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=83.42  E-value=65  Score=34.05  Aligned_cols=80  Identities=11%  Similarity=0.051  Sum_probs=51.8

Q ss_pred             ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc----cCCCccccccc----cccccCeeEEEeCCCCCEEE
Q 010390          219 ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ----AWPHAESSSAK----ETRLHGISSLSQDSNGVFLT  290 (512)
Q Consensus       219 ~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~  290 (512)
                      ....|.++....-+..++. ...||.|.++|..+.+.....    ..+........    ......+..++|+|++..++
T Consensus       258 ~~~~V~si~~~~~~~~v~~-~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v  336 (753)
T PF11635_consen  258 LNKRVVSITSPELDIVVAF-AFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV  336 (753)
T ss_pred             cCCeEEEEEecccCcEEEE-EEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence            3456888887777776666 448999999999988766544    11110000000    01112455689999999999


Q ss_pred             EEecCCeEE
Q 010390          291 ASCMDHRIY  299 (512)
Q Consensus       291 ~~~~dg~i~  299 (512)
                      .-..+|.+.
T Consensus       337 ~~~~~~~~~  345 (753)
T PF11635_consen  337 QIDEDGKTK  345 (753)
T ss_pred             EEecCCCce
Confidence            988888865

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=82.44  E-value=38  Score=30.72  Aligned_cols=160  Identities=13%  Similarity=0.065  Sum_probs=81.8

Q ss_pred             cccEEEEEEeecC-----CEEEEEeecCCeEEEEeccCccceecccCCC-cccc-------ccccccccCeeEEEeCC--
Q 010390          220 SMSITSVLYLKDE-----VSIATASAVNSIVKFWDTRNLKAQITQAWPH-AESS-------SAKETRLHGISSLSQDS--  284 (512)
Q Consensus       220 ~~~v~~~~~~~~~-----~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~i~~~~~~~--  284 (512)
                      .+.+..+.+....     .++..+-...+.|.++|+.+++......... ..+.       ........++..++.+|  
T Consensus        60 ~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~  139 (287)
T PF03022_consen   60 DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPIS  139 (287)
T ss_dssp             CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTS
T ss_pred             ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCC
Confidence            4467777776532     3444545455689999999876543322111 0000       01112233477777765  


Q ss_pred             -CCCEEEEEecCC-eEEEEEcccCCCC----------ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390          285 -NGVFLTASCMDH-RIYLYNVLQLDKG----------PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       285 -~~~~l~~~~~dg-~i~i~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~  352 (512)
                       +++.|+-....+ .++--........          .+..+ +... .....++++++|.++++--..+.|..|+..+.
T Consensus       140 ~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~-~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~  217 (287)
T PF03022_consen  140 PDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG-SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGP  217 (287)
T ss_dssp             TTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----SECEEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred             CCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccC-CCCceEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence             777777665443 3444432211111          11111 1111 12345788899999999989999999998863


Q ss_pred             CCC--Ccee-cc-c-cCCeEEEEeCC--CCCCeEEEE
Q 010390          353 QAD--PIKL-KS-H-DGEVTAVNWCP--NEAGKIVTS  382 (512)
Q Consensus       353 ~~~--~~~~-~~-h-~~~v~~v~~~~--~~~~~l~s~  382 (512)
                      -..  ...+ .. . -..+.++.+.+  ++ .+.+..
T Consensus       218 ~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g-~L~v~s  253 (287)
T PF03022_consen  218 YTPENFEILAQDPRTLQWPDGLKIDPEGDG-YLWVLS  253 (287)
T ss_dssp             B-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred             cCccchheeEEcCceeeccceeeeccccCc-eEEEEE
Confidence            211  1111 11 1 24678888888  66 444443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=82.14  E-value=37  Score=30.36  Aligned_cols=202  Identities=12%  Similarity=0.061  Sum_probs=108.3

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccC--cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMG--HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS  185 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  185 (512)
                      .+-+..+.++  +++...+..+.-++|.|+.+......+..  -.+--.++..+  | ++...+..|.-+.+.|+.+.+.
T Consensus        86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCCC
Confidence            3556677775  45666666777799999987654333221  11334444444  4 7888888677788899987654


Q ss_pred             CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                      .....                        +..........++.+  |++...+. .|+-+.+.|+.+.......      
T Consensus       161 P~lag------------------------rya~~~~d~~~v~IS--Gn~AYvA~-~d~GL~ivDVSnp~sPvli------  207 (370)
T COG5276         161 PQLAG------------------------RYALPGGDTHDVAIS--GNYAYVAW-RDGGLTIVDVSNPHSPVLI------  207 (370)
T ss_pred             ceeee------------------------eeccCCCCceeEEEe--cCeEEEEE-eCCCeEEEEccCCCCCeEE------
Confidence            33110                        111112222344444  44444433 6888999999876654321      


Q ss_pred             ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEE
Q 010390          266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAY  345 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  345 (512)
                         ........+.++..+++-.+++..  +--+.+-|........+.-.........+.  .+.-.+++......+.-+.
T Consensus       208 ---~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s--~v~Vs~~~~Yvadga~gl~  280 (370)
T COG5276         208 ---GSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSIS--TVPVSGEYAYVADGAKGLP  280 (370)
T ss_pred             ---EEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCccccc--ceecccceeeeeccccCce
Confidence               111122257777777765555544  344666666543322222111111111111  2233455565555566677


Q ss_pred             EEecCCCCC
Q 010390          346 VWQVNKPQA  354 (512)
Q Consensus       346 iw~~~~~~~  354 (512)
                      +-|+.+...
T Consensus       281 ~idisnp~s  289 (370)
T COG5276         281 IIDISNPPS  289 (370)
T ss_pred             eEeccCCCC
Confidence            777776544

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=81.63  E-value=76  Score=33.65  Aligned_cols=243  Identities=7%  Similarity=0.065  Sum_probs=0.0

Q ss_pred             ccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEee-----CCCCCeEEE
Q 010390           94 ENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH-----PTNSDILVS  168 (512)
Q Consensus        94 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~~~~l~s  168 (512)
                      .......+....|..+.+..++.......-.....+..+++--+.......-.-.-..+|..|+|.     .+....++.
T Consensus        23 ~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~  102 (765)
T PF10214_consen   23 GSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIKQIKFATLSESFDEKSRWLA  102 (765)
T ss_pred             CCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCCCeeEEEecccccccCCcCcEEE


Q ss_pred             EeCCCcEEEEe------CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC
Q 010390          169 GSRDGSFAIWD------LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN  242 (512)
Q Consensus       169 ~~~dg~i~vwd------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d  242 (512)
                      .-....+.|+.      +..............+.......-+..               +...++|+|....-++.-...
T Consensus       103 Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~---------------~~aDv~FnP~~~~q~AiVD~~  167 (765)
T PF10214_consen  103 VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGF---------------PHADVAFNPWDQRQFAIVDEK  167 (765)
T ss_pred             EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCC---------------ccceEEeccCccceEEEEecc


Q ss_pred             CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceecee
Q 010390          243 SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESF  322 (512)
Q Consensus       243 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  322 (512)
                      |...|||+.......                           ...+-+.....|.| ++|....              ..
T Consensus       168 G~Wsvw~i~~~~~~~---------------------------~~~~~~~~~~~gsi-~~d~~e~--------------s~  205 (765)
T PF10214_consen  168 GNWSVWDIKGRPKRK---------------------------SSNLRLSRNISGSI-IFDPEEL--------------SN  205 (765)
T ss_pred             CcEEEEEeccccccC---------------------------CcceeeccCCCccc-cCCCccc--------------Cc


Q ss_pred             EEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC-ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          323 YVKSEICPNASHILSGSSDGNAYVWQVNKPQADP-IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       323 ~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      ...+.|.++.+.|+.++... +.++|+.+..... .........|.++.-++..+.+++.-.. ..|...++..
T Consensus       206 w~rI~W~~~~~~lLv~~r~~-l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~  277 (765)
T PF10214_consen  206 WKRILWVSDSNRLLVCNRSK-LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS  277 (765)
T ss_pred             ceeeEecCCCCEEEEEcCCc-eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccC

These proteins are found in fungi.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=81.26  E-value=74  Score=33.22  Aligned_cols=77  Identities=12%  Similarity=0.142  Sum_probs=54.1

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCC----------CCee--e-ec-------c-cCcCCCEEEEEeeCCC--CC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAE----------KKKC--T-GA-------L-MGHTGSIKSLCSHPTN--SD  164 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~----------~~~~--~-~~-------~-~~h~~~v~~l~~~~~~--~~  164 (512)
                      .-.|..|..+|+|++|+..|..| |.|-.+.          .|+.  . ++       + ..+...|..+.|+|.+  +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            35799999999999999888776 4444432          1111  1 11       1 2344678999999974  46


Q ss_pred             eEEEEeCCCcEEEEeCCCCCC
Q 010390          165 ILVSGSRDGSFAIWDLRCKSS  185 (512)
Q Consensus       165 ~l~s~~~dg~i~vwd~~~~~~  185 (512)
                      .|+.-..|+++|+||+.....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             eEEEEecCCEEEEEecCCCCC
Confidence            888888999999999975443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=80.28  E-value=52  Score=30.81  Aligned_cols=114  Identities=7%  Similarity=-0.011  Sum_probs=68.1

Q ss_pred             CcEEEEeCCCCeeeecccCcC--CCEEEEEeeC--CCC-CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          130 QTIKIWDAEKKKCTGALMGHT--GSIKSLCSHP--TNS-DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~~--~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      ..+.+|...+++..+++.-..  --+..+.|..  +.. -+.-++-.++.++++.....+...    ...+. ..     
T Consensus       229 ~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~----~~vis-vp-----  298 (476)
T KOG0918|consen  229 SHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSA----EVVIS-VP-----  298 (476)
T ss_pred             eeeEEEecCCccceeEEecCCCCcceEEeeeccCCCcccceeeeeccCCceeeeeccccccce----eEEEe-cC-----
Confidence            457889998888887775333  3456677743  221 133333445566766554321111    00000 00     


Q ss_pred             ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ  256 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~  256 (512)
                         ...-.........+-|+.+..+-|.+++.+++-.-|.|+-||+.....+
T Consensus       299 ---~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~  347 (476)
T KOG0918|consen  299 ---PLKVENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNP  347 (476)
T ss_pred             ---ccccccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCc
Confidence               0000112334556779999999999999999988999999999876654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	512
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-12
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-12
2h9l_A	329	Wdr5delta23 Length = 329		2e-12
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-12
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-12
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-12
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-12
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-12
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-12
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-12
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-12
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-12
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-12
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-12
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-11
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-10
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-09
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-08
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-08
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-08
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-07
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		7e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		9e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		9e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		4e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		9e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		7e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		6e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		6e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		6e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		9e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		4e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		7e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		7e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		8e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		8e-04

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 69  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 127
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 128 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 160
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 161 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 206
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 207 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 264 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 314

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 85  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 143
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 144 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 176
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 177 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 222
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 223 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 279
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 280 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 330

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 87  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 145
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 146 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 178
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 179 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 224
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 225 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 281
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 282 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 332

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 80  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 138
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 139 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 171
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 172 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 217
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 218 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 274
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 275 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 325

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 63  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 121
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 122 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 154
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 155 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 200
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 201 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 258 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 308

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 63  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 121
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 122 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 154
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 155 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 200
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 201 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 258 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 308

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 59  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 117
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 118 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 150
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 151 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 196
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 197 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 253
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 254 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 304

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 64  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 122
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 123 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 155
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 156 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 201
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 202 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 258
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 259 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 309

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 62  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 120
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 121 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 153
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 154 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 199
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 200 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 256
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 257 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 307

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 69  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 127
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 128 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 160
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 161 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 206
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 207 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 264 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 314

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 69  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 127
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 128 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 160
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 161 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 206
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 207 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 264 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 314

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 68  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 126
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 127 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 159
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 160 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 205
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 206 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 262
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 263 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 313

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 124
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 125 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 157
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 158 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 203
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 204 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 261 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 311

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 125/294 (42%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 124
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++        C ++    S  V   H                    
Sbjct: 125 IVSGSFDESVRIWDVK-----TGMCLKTLPAHSDPVSAVH-------------------- 159
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
                 + S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 160 ---FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 203
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 204 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 261 DNMVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 311

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 125/294 (42%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 124
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++        C ++    S  V   H                    
Sbjct: 125 IVSGSFDESVRIWDVK-----TGMCLKTLPAHSDPVSAVH-------------------- 159
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
                 + S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 160 ---FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 203
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 204 SPNGKYILAATLDNDLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++LW
Sbjct: 261 DNMVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 311

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 124
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 125 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 157
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 158 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 203
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 204 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++L+
Sbjct: 261 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLY 311

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 128/293 (43%), Gaps = 56/293 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H+  I D+ W  +   +++AS D+T+KIWD    KC   L GH+  +   C+    S++
Sbjct: 66  GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 124
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           +VSGS D S  IWD++                             K +    A S  +++
Sbjct: 125 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 157
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
           V + +D  S+  +S+ + + + WDT +   LK  I    P              +S +  
Sbjct: 158 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 203
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
             NG ++ A+ +D+ + L++     KG  ++ ++G + E + + +         I+SGS 
Sbjct: 204 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRL 390
           D   Y+W +   +    KL+ H   V +    P E   I+ S+   +D T++L
Sbjct: 261 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKL 310

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 124/278 (44%), Gaps = 25/278 (8%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182
           I++ S D T+K+W A   KC   L+GHTG +    S     +I++SGS D +  +W+   
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV---WSSQMRDNIIISGSTDRTLKVWN--- 185
Query: 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAV 241
             +    C  +    ++ V+  HL  + + VS  + A++ +  +   +   V +   +AV
Sbjct: 186 --AETGECIHTLYGHTSTVRCMHL-HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242
Query: 242 NSIVKFWDTRNLKAQ----ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR 297
             +   +D R + +     + + W     +     + H     S   +G+ + +  +D  
Sbjct: 243 RCVQ--YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTS 300
Query: 298 IYLYNVLQLDKGPIQH-FSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356
           I +++V   + G   H  +G   +S     E+  N   ++SG++D    +W +   Q   
Sbjct: 301 IRVWDV---ETGNCIHTLTG--HQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQ 353
Query: 357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394
             L+  +   +AV         ++TSSDD TV+LW L+
Sbjct: 354 -TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 111/271 (40%), Gaps = 37/271 (13%)
Query: 111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS 170
           I  +C+  +   + T + D+ I+IWD E +K    L GH   I SL   P+  D LVSGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGS 184
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG------AHLLSQSKRVSRRKAASM--- 221
            D +  IWDLR      +   E  V + AV  G      A  L ++ RV   +   +   
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 222 -------------SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS 268
                        S+ SV++ +D  S+ + S ++  VK W+ +N   +     P+   S 
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPN---SG 300
Query: 269 AKETRLHG----ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYV 324
             E    G    + S++   N  ++ +   D  +  ++  +    P+    G R     V
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD--KKSGNPLLMLQGHRNSVISV 358
Query: 325 K----SEICPNASHILSGSSDGNAYVWQVNK 351
                S + P  +   +GS D  A +W+  K
Sbjct: 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
           ++TAS D TIKIWD + K C   L GH  ++     HPT   I++SGS DG+  IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
           ++TAS D TIKIWD + K C   L GH  ++     HPT   I++SGS DG+  IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
           ++TAS D TIKIWD + K C   L GH  ++     HPT   I++SGS DG+  IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
           ++TAS D TIKIWD + K C   L GH  ++     HPT   I++SGS DG+  IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 69  AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL---T 125
           A S +D Y++   + +K+  +    ++A    +  +  H   + + C     +N L   T
Sbjct: 671 AFSSDDSYIATCSADKKVKIW----DSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLAT 725
Query: 126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS 185
            S D  +K+WD  +K+C   + GHT S+   C    + ++L S S DG+  +WD+R  + 
Sbjct: 726 GSNDFFLKLWDLNQKECRNTMFGHTNSVNH-CRFSPDDELLASCSADGTLRLWDVRSANE 784
Query: 186 PKSNCAESFVFSS 198
            KS   + F  SS
Sbjct: 785 RKSINVKRFFLSS 797

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 69  AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL---T 125
           A S +D Y++   + +K+  +    ++A    +  +  H   + + C     +N L   T
Sbjct: 664 AFSSDDSYIATCSADKKVKIW----DSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLAT 718
Query: 126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS 185
            S D  +K+WD  +K+C   + GHT S+   C    + ++L S S DG+  +WD+R  + 
Sbjct: 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNH-CRFSPDDELLASCSADGTLRLWDVRSANE 777
Query: 186 PKSNCAESFVFSS 198
            KS   + F  SS
Sbjct: 778 RKSINVKRFFLSS 790

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 93/242 (38%), Gaps = 42/242 (17%)
Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS-DI 165
           H N +    +   D  ILTASGD T  +WD E  +   +  GH   +  L   P+ + + 
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
            VSG  D    +WD+R        C ++F                      +     + S
Sbjct: 213 FVSGGCDKKAMVWDMR-----SGQCVQAF----------------------ETHESDVNS 245
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285
           V Y     + A+ S  ++  + +D R  +              +KE+ + G SS+    +
Sbjct: 246 VRYYPSGDAFASGSD-DATCRLYDLRADREVAIY---------SKESIIFGASSVDFSLS 295
Query: 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAY 345
           G  L A   D+ I +++VL+  +  I      R+ +  V     P+ +   SGS D    
Sbjct: 296 GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----PDGTAFCSGSWDHTLR 351
Query: 346 VW 347
           VW
Sbjct: 352 VW 353

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 101/249 (40%), Gaps = 42/249 (16%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH 159
           R+S  +A        C   +D  I+T+SGD T  +WD E  + T    GHTG + SL   
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
           P ++ + VSG+ D S  +WD+R     +  C ++F    +                    
Sbjct: 194 P-DTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHES-------------------- 227
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279
              I ++ +  +  + AT S  ++  + +D R  +  +T          + +  + GI+S
Sbjct: 228 --DINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY---------SHDNIICGITS 275
Query: 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339
           +S   +G  L A   D    +++ L+ D+  +      R+    V  +       + +GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD----GMAVATGS 331
Query: 340 SDGNAYVWQ 348
            D    +W 
Sbjct: 332 WDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 101/249 (40%), Gaps = 42/249 (16%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH 159
           R+S  +A        C   +D  I+T+SGD T  +WD E  + T    GHTG + SL   
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
           P ++ + VSG+ D S  +WD+R     +  C ++F    +                    
Sbjct: 194 P-DTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHES-------------------- 227
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279
              I ++ +  +  + AT S  ++  + +D R  +  +T          + +  + GI+S
Sbjct: 228 --DINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY---------SHDNIICGITS 275
Query: 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339
           +S   +G  L A   D    +++ L+ D+  +      R+    V  +       + +GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD----GMAVATGS 331
Query: 340 SDGNAYVWQ 348
            D    +W 
Sbjct: 332 WDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 101/249 (40%), Gaps = 42/249 (16%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH 159
           R+S  +A        C   +D  I+T+SGD T  +WD E  + T    GHTG + SL   
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
           P ++ + VSG+ D S  +WD+R     +  C ++F    +                    
Sbjct: 194 P-DTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHES-------------------- 227
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279
              I ++ +  +  + AT S  ++  + +D R  +  +T          + +  + GI+S
Sbjct: 228 --DINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY---------SHDNIICGITS 275
Query: 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339
           +S   +G  L A   D    +++ L+ D+  +      R+    V  +       + +GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD----GMAVATGS 331
Query: 340 SDGNAYVWQ 348
            D    +W 
Sbjct: 332 WDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 101/249 (40%), Gaps = 42/249 (16%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH 159
           R+S  +A        C   +D  I+T+SGD T  +WD E  + T    GHTG + SL   
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
           P ++ + VSG+ D S  +WD+R     +  C ++F    +                    
Sbjct: 194 P-DTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHES-------------------- 227
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279
              I ++ +  +  + AT S  ++  + +D R  +  +T          + +  + GI+S
Sbjct: 228 --DINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY---------SHDNIICGITS 275
Query: 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339
           +S   +G  L A   D    +++ L+ D+  +      R+    V  +       + +GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD----GMAVATGS 331
Query: 340 SDGNAYVWQ 348
            D    +W 
Sbjct: 332 WDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 42/248 (16%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH 159
           R+S  +A        C   +D  I+T+SGD T  +WD E  + T    GHTG + SL   
Sbjct: 145 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 204
Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
           P ++ + VSG+ D S  +WD+R     +  C ++F    +                    
Sbjct: 205 P-DTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHES-------------------- 238
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279
              I ++ +  +  + AT S  ++  + +D R  +  +T          + +  + GI+S
Sbjct: 239 --DINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY---------SHDNIICGITS 286
Query: 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339
           +S   +G  L A   D    +++ L+ D+  +      R+    V  +       + +GS
Sbjct: 287 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD----GMAVATGS 342
Query: 340 SDGNAYVW 347
            D    +W
Sbjct: 343 WDSFLKIW 350

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 40/299 (13%)
Query: 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174
           C   +D  I++   D TIKIWD    +C   L GHTGS+  L     +  ++++GS D +
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL---QYDERVIITGSSDST 194
Query: 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS 234
             +WD+       +                 +++ SK  S       S T +   +  V 
Sbjct: 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR--VL 252
Query: 235 IATASAVNSIVKFWDTRNLKA---QITQAWPHAESSSAKETRLH--GISSLSQDSNGVFL 289
           +   +AVN +V F D   + A   +  + W  +     +    H  GI+ L      V  
Sbjct: 253 VGHRAAVN-VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVS 311
Query: 290 TASCMDHRIYLYNV-----LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344
            +S  D+ I L+++     L++ +G  +     R ++             I+SG+ DG  
Sbjct: 312 GSS--DNTIRLWDIECGACLRVLEGHEELVRCIRFDN-----------KRIVSGAYDGKI 358
Query: 345 YVWQV-----NKPQADPIKLKS---HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
            VW +      +  A  + L++   H G V  + +   +  +IV+SS D T+ +W   N
Sbjct: 359 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWDFLN 414

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 110/281 (39%), Gaps = 66/281 (23%)
Query: 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174
           C   ED  ++T + D+ I+++D+  KK    L GH G + +L     +  ILVSGS D +
Sbjct: 127 CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWAL--KYAHGGILVSGSTDRT 184
Query: 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS 234
             +WD++     K  C   F   ++ V+                       ++  K+   
Sbjct: 185 VRVWDIK-----KGCCTHVFEGHNSTVR--------------------CLDIVEYKNIKY 219
Query: 235 IATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM 294
           I T S  N++                W   + SS  +   HG      D   VF T    
Sbjct: 220 IVTGSRDNTL--------------HVWKLPKESSVPD---HG---EEHDYPLVFHTP--- 256
Query: 295 DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354
           +   Y   VL+     ++  SG              + + ++SGS D    VW V + + 
Sbjct: 257 EENPYFVGVLRGHXASVRTVSG--------------HGNIVVSGSYDNTLIVWDVAQXKC 302
Query: 355 DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
             I L  H   + +  +  +E  + +++S D T+R+W LEN
Sbjct: 303 LYI-LSGHTDRIYSTIY-DHERKRCISASXDTTIRIWDLEN 341

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 110/281 (39%), Gaps = 66/281 (23%)
Query: 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174
           C   ED  ++T + D+ I+++D+  KK    L GH G + +L     +  ILVSGS D +
Sbjct: 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL--KYAHGGILVSGSTDRT 184
Query: 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS 234
             +WD++     K  C   F   ++ V+                       ++  K+   
Sbjct: 185 VRVWDIK-----KGCCTHVFEGHNSTVR--------------------CLDIVEYKNIKY 219
Query: 235 IATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM 294
           I T S  N++                W   + SS  +   HG      D   VF T    
Sbjct: 220 IVTGSRDNTL--------------HVWKLPKESSVPD---HG---EEHDYPLVFHTP--- 256
Query: 295 DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354
           +   Y   VL+     ++  SG              + + ++SGS D    VW V + + 
Sbjct: 257 EENPYFVGVLRGHMASVRTVSG--------------HGNIVVSGSYDNTLIVWDVAQMKC 302
Query: 355 DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
             I L  H   + +  +  +E  + +++S D T+R+W LEN
Sbjct: 303 LYI-LSGHTDRIYSTIY-DHERKRCISASMDTTIRIWDLEN 341

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 131/332 (39%), Gaps = 69/332 (20%)
Query: 87  PSFACHRENAEKARISDW-----------VAHQNAIFDLCWIKEDTNILTASGDQTIKIW 135
           P F+     +E A I  W             H +++ D+ +      + + S D TIK+W
Sbjct: 118 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
Query: 136 DAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195
           D +  +C   + GH  ++ S+   P N D +VS SRD +  +W+++        C ++F 
Sbjct: 178 DFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQT-----GYCVKTF- 230
Query: 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW--DTRNL 253
                               R+   M    V   +D   IA+ S  +  V+ W   T+  
Sbjct: 231 -----------------TGHREWVRM----VRPNQDGTLIASCSN-DQTVRVWVVATKEC 268
Query: 254 KAQITQ--------AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV-- 303
           KA++ +        +W   ESS +  +   G  +      G FL +   D  I +++V  
Sbjct: 269 KAELREHRHVVECISWA-PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327
Query: 304 ----LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359
               + L    + H +  R   F+           ILS + D    VW     +     L
Sbjct: 328 GMCLMTL----VGHDNWVRGVLFH------SGGKFILSCADDKTLRVWDYKNKRCMKT-L 376
Query: 360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
            +H+  VT++++    A  +VT S D TV++W
Sbjct: 377 NAHEHFVTSLDF-HKTAPYVVTGSVDQTVKVW 407

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
           I++AS D+T+K+W+    K    L GHTG + ++   P  S +  SG +DG   +WDL
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDL 590

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 137/344 (39%), Gaps = 57/344 (16%)
Query: 85  KLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKK-- 141
           K P  A   ENA+K  I   +   +A     W    T ++  ASG QT+    A  +   
Sbjct: 313 KDPRIAATMENAQKGEIMPNIPQMSAF----WYAVRTAVINAASGRQTVDAALAAAQTNA 368
Query: 142 -----CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL----------RCKSSP 186
                  G +  HT  + ++ +   N+DI+VS SRD S  +W L          + + + 
Sbjct: 369 AAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG 428
Query: 187 KSNCAESFVFSSAVVKGAHLLSQS----KRVSRRKAASMSITSVLYLKDEVSIATASAVN 242
            S+  E  V SS    G   LS S     R+    A   +   V + KD +S+A +    
Sbjct: 429 HSHFVEDVVLSS---DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 243 SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV--FLTASCMDHRIYL 300
            IV     R +K   T        S   E     +S +    N +   + ++  D  + +
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 301 YNVLQLDKGPIQHFSGCRIESF------YVKS-EICPNASHILSGSSDGNAYVWQVNKPQ 353
           +N+           S C++ S       YV +  + P+ S   SG  DG   +W +    
Sbjct: 546 WNL-----------SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL---- 590
Query: 354 ADPIKLKSHDGE--VTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
           A+  KL S +    + A+ + PN     + ++ ++ +++W LE+
Sbjct: 591 AEGKKLYSLEANSVIHALCFSPNR--YWLCAATEHGIKIWDLES 632

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 46/239 (19%)
Query: 119 EDTNILTASGDQTIKIWD---AEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDG 173
           ++T ++T SGDQT  +WD    ++    G+    GHT  + SL  +  N+++ +SGS D 
Sbjct: 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT 228
Query: 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV 233
           +  +WDLR               +S  V+  H                 I SV +  D  
Sbjct: 229 TVRLWDLR--------------ITSRAVRTYH------------GHEGDINSVKFFPDGQ 262
Query: 234 SIATASAVNSIVKFWDTR-NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS 292
              T S  +   + +D R   + Q+    P        +  L  ++S++   +G  L A 
Sbjct: 263 RFGTGSD-DGTCRLFDMRTGHQLQVYNREP-----DRNDNELPIVTSVAFSISGRLLFAG 316
Query: 293 CMDHRIYLYNVLQ----LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW 347
             +   Y+++ L     L+ G +Q+    RI    + S+     S + +GS D N  +W
Sbjct: 317 YSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD----GSALCTGSWDKNLKIW 371

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
           +DWV+    + +     +   I++A  D+ +K W+  + +     +GH  +I +L + P 
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
            + ++ S  +DG   +W+L  K +  +  A+  VFS A
Sbjct: 208 GT-LIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLA 244

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
           +DWV+    + +     +   I++A  D+ +K W+  + +     +GH  +I +L + P 
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
            + ++ S  +DG   +W+L  K +  +  A+  VFS A
Sbjct: 208 GT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
           +DWV+    + +     +   I++A  D+ +K W+  + +     +GH  +I +L + P 
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
            + ++ S  +DG   +W+L  K +  +  A+  VFS A
Sbjct: 208 GT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 111/288 (38%), Gaps = 53/288 (18%)
Query: 111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS 170
           I  + WIKE   +   +    +++WD +++K    +  H+  + SL     NS IL SGS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGS 217
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
           R G     D+R         AE  V   A + G                S  +  + +  
Sbjct: 218 RSGHIHHHDVR--------VAEHHV---ATLSG---------------HSQEVCGLRWAP 251
Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290
           D   +A+    N +V  W +    A     W   ++ +  +  +  ++     SN +   
Sbjct: 252 DGRHLASGGNDN-LVNVWPS----APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 306
Query: 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-----PNASHILSGS--SDGN 343
               D  I ++NV           SG  + +    S++C     P+   ++SG   +   
Sbjct: 307 GGTSDRHIRIWNVC----------SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 356
Query: 344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
             +W+     A   +LK H   V ++   P+ A  + +++ D T+RLW
Sbjct: 357 LVIWKY-PTMAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLW 402

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
           +DWV+    + +     +   I++A  D+ +K W+  + +     +GH  +I +L + P 
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
            + ++ S  +DG   +W+L  K +  +  A+  VFS A
Sbjct: 208 GT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 130/316 (41%), Gaps = 41/316 (12%)
Query: 90  ACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGH 149
             H    E+ R+    AH +++  + +  +   I +AS D+T+K+W+    +    L GH
Sbjct: 1   GSHMGVKERNRLE---AHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 56
Query: 150 TGSIKSLCSHPTNSDILVSGSRDGSFAIWD--------LRCKSSPKSNCAES----FVFS 197
           + S+  +   P +   + S S D +  +W+        L   SS     A S     + S
Sbjct: 57  SSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 115
Query: 198 SAVVKGAHLLSQSKRVSRRKAA-SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ 256
           ++  K   L +++ ++ +     S S+  V +  D  +IA+AS  +  VK W   N   Q
Sbjct: 116 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLW---NRNGQ 171
Query: 257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV-LQLDKGPIQHFS 315
           + Q      SS         +  ++   +G  + ++  D  + L+N   QL +    H S
Sbjct: 172 LLQTLTGHSSS---------VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 222
Query: 316 GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE 375
             R  +F       P+   I S S D    +W  N        L  H   V  V + P +
Sbjct: 223 SVRGVAF------SPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHSSSVNGVAFRP-D 273
Query: 376 AGKIVTSSDDYTVRLW 391
              I ++SDD TV+LW
Sbjct: 274 GQTIASASDDKTVKLW 289

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
           +DWV+    + +     +   I++A  D+ +K W+  + +     +GH  +I +L + P 
Sbjct: 142 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 201
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
            + ++ S  +DG   +W+L  K +  +  A+  VFS A
Sbjct: 202 GT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 238

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
           +DWV+    + +     +   I++A  D+ +K W+  + +     +GH  +I +L + P 
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
            + ++ S  +DG   +W+L  K +  +  A+  VFS A
Sbjct: 208 GT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 112/281 (39%), Gaps = 43/281 (15%)
Query: 138 EKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS----PKSNCAES 193
           E+    G L GH G +  + + P   D+++S SRD +  +W L    +    P+      
Sbjct: 3   EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 62
Query: 194 FVFSSAVV---KGAHLLSQS----KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIV- 245
             F S VV    G   LS S     R+      + +   V + KD +S+A +S    IV 
Sbjct: 63  SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 122
Query: 246 -------KFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRI 298
                  K W+T  +     Q   H+E  S            S +S+   + +   D  +
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR--------FSPNSSNPIIVSCGWDKLV 174
Query: 299 YLYNV--LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356
            ++N+   +L    I H        +     + P+ S   SG  DG A +W +N+ +   
Sbjct: 175 KVWNLANCKLKTNHIGH------TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--- 225
Query: 357 IKLKSHDGE--VTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
             L + DG   + A+ + PN     + ++   ++++W LE 
Sbjct: 226 -HLYTLDGGDIINALCFSPNR--YWLCAATGPSIKIWDLEG 263

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 111/288 (38%), Gaps = 53/288 (18%)
Query: 111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS 170
           I  + WIKE   +   +    +++WD +++K    +  H+  + SL     NS IL SGS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGS 206
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
           R G     D+R         AE  V   A + G                S  +  + +  
Sbjct: 207 RSGHIHHHDVR--------VAEHHV---ATLSG---------------HSQEVCGLRWAP 240
Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290
           D   +A+    N +V  W +    A     W   ++ +  +  +  ++     SN +   
Sbjct: 241 DGRHLASGGNDN-LVNVWPS----APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 295
Query: 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-----PNASHILSGS--SDGN 343
               D  I ++NV           SG  + +    S++C     P+   ++SG   +   
Sbjct: 296 GGTSDRHIRIWNVC----------SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 345
Query: 344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
             +W+     A   +LK H   V ++   P+ A  + +++ D T+RLW
Sbjct: 346 LVIWKY-PTMAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLW 391

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 112/281 (39%), Gaps = 43/281 (15%)
Query: 138 EKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS----PKSNCAES 193
           E+    G L GH G +  + + P   D+++S SRD +  +W L    +    P+      
Sbjct: 26  EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 85
Query: 194 FVFSSAVV---KGAHLLSQS----KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIV- 245
             F S VV    G   LS S     R+      + +   V + KD +S+A +S    IV 
Sbjct: 86  SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 145
Query: 246 -------KFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRI 298
                  K W+T  +     Q   H+E  S            S +S+   + +   D  +
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR--------FSPNSSNPIIVSCGWDKLV 197
Query: 299 YLYNV--LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356
            ++N+   +L    I H        +     + P+ S   SG  DG A +W +N+ +   
Sbjct: 198 KVWNLANCKLKTNHIGH------TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--- 248
Query: 357 IKLKSHDGE--VTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
             L + DG   + A+ + PN     + ++   ++++W LE 
Sbjct: 249 -HLYTLDGGDIINALCFSPNR--YWLCAATGPSIKIWDLEG 286

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 131/330 (39%), Gaps = 39/330 (11%)
Query: 67  IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126
           +FA +  DG + L++      +     ++ +       VAH  ++F L W  + T I +A
Sbjct: 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN------VAHSGSVFGLTWSPDGTKIASA 257
Query: 127 SGDQTIKIWDAEKKKCTGAL----------MGHTGSIKSLCSHPTNSDILVSGSRDGSF- 175
           S D+TIKIW+    K    +          +G   + ++L S   N  I       GS  
Sbjct: 258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSID 317
Query: 176 -AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ--SKRVSRRKAASMSITSVLYLKDE 232
              +      +  S+ A+     SA  +G H+ S   S  +S R    +  T +  +K  
Sbjct: 318 QVRYGHNKAITALSSSADGKTLFSADAEG-HINSWDISTGISNRVFPDVHATMITGIK-- 374
Query: 233 VSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS-SLSQDSNGVFLTA 291
               T S  +     WD  +LK  +       +SS A   +L      L+  ++G    A
Sbjct: 375 ----TTSKGDLFTVSWD-DHLKV-VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 428
Query: 292 SCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351
           +C  H I +Y+  +L + PI + S C          +  +   +  G  D   +V++++ 
Sbjct: 429 ACYKH-IAIYSHGKLTEVPISYNSSCV--------ALSNDKQFVAVGGQDSKVHVYKLSG 479
Query: 352 PQADPIKLKSHDGEVTAVNWCPNEAGKIVT 381
                +K   H  E+T+V +  N A  + T
Sbjct: 480 ASVSEVKTIVHPAEITSVAFSNNGAFLVAT 509

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181
           ++AS D ++++W+ +  +C    +GHT  + S+   P N  I VSG RD +  +W+++
Sbjct: 83  VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI-VSGGRDNALRVWNVK 139

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 104/296 (35%), Gaps = 74/296 (25%)
Query: 106 AHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEKKKCTGALM-------GHTGSIKSLC 157
            HQ   + L W      ++L+AS D TI +WD       G ++       GHT  ++ + 
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217
            H  +  +  S + D    IWD R  ++ K                      S  V    
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKP---------------------SHSVDAHT 273
Query: 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277
           A    ++   Y   E  +AT SA +  V  WD RNLK ++     H +     +   H  
Sbjct: 274 AEVNCLSFNPY--SEFILATGSA-DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-- 328
Query: 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
                  N   L +S  D R+   NV  L K               +  E  P       
Sbjct: 329 -------NETILASSGTDRRL---NVWDLSK---------------IGEEQSP------E 357
Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
            + DG   +  ++           H  +++  +W PNE   I + S+D  +++W +
Sbjct: 358 DAEDGPPELLFIH---------GGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 71/343 (20%), Positives = 122/343 (35%), Gaps = 85/343 (24%)
Query: 63  KNSHIFAVSDEDGYVSLFDSRRKL----PSFACHRENAEKARISDWVAHQNAIFDLCWIK 118
           +N HI A       V +FD  +      PS  C+ +     R+     HQ   + L W  
Sbjct: 137 QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPD----LRLR---GHQKEGYGLSWNS 189
Query: 119 E-DTNILTASGDQTIKIWDAEKKKCTGALM-------GHTGSIKSLCSHPTNSDILVSGS 170
               ++L+AS D T+ +WD       G ++       GH+  ++ +  H  +  +  S +
Sbjct: 190 NLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVA 249
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
            D    IWD R               S+   K +HL      V    A    ++   Y  
Sbjct: 250 DDQKLMIWDTR---------------SNTTSKPSHL------VDAHTAEVNCLSFNPY-- 286
Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290
            E  +AT SA +  V  WD RNLK ++     H +         H         N   L 
Sbjct: 287 SEFILATGSA-DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH---------NETILA 336
Query: 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350
           +S  D R+ ++++ ++ +           E     +E  P     + G            
Sbjct: 337 SSGTDRRLNVWDLSKIGE-----------EQSAEDAEDGPPELLFIHG------------ 373
Query: 351 KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
                      H  +++  +W PNE   I + S+D  +++W +
Sbjct: 374 ----------GHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSL-CSHPTNSDI 165
           H   + D+CW  + + + TAS D+T K+WD    +    +  H   +K++      N   
Sbjct: 85  HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSC 143
Query: 166 LVSGSRDGSFAIWDLR 181
           +++GS D +   WD R
Sbjct: 144 VMTGSWDKTLKFWDTR 159

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/288 (19%), Positives = 107/288 (37%), Gaps = 53/288 (18%)
Query: 111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS 170
           I  + WIKE   +   +    +++WD +++K    +  H+  + SL     NS IL SGS
Sbjct: 70  ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL---SWNSYILSSGS 126
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
           R G     D+R                               V+     S  +  + +  
Sbjct: 127 RSGHIHHHDVRVA--------------------------EHHVATLSGHSQEVCGLRWAP 160
Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290
           D   +A+    N +V  W +    A     W   ++ +  +  +  ++     SN +   
Sbjct: 161 DGRHLASGGNDN-LVNVWPS----APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 215
Query: 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-----PNASHILSGS--SDGN 343
               D  I ++NV           SG  + +    S++C     P+   ++SG   +   
Sbjct: 216 GGTSDRHIRIWNVC----------SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 265
Query: 344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
             +W+     A   +LK H   V ++   P+ A  + +++ D T+RLW
Sbjct: 266 LVIWKY-PTMAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLW 311

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 106 AHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEK-------KKCTGALMGHTGSIKSLC 157
            H   + D+ W   + N++ + S D T+ +W+          ++    L GHT  +  + 
Sbjct: 79  GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 158 SHPTNSDILVSGSRDGSFAIWDL 180
            HPT  ++L+S   D    +WD+
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDV 161

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 105/296 (35%), Gaps = 74/296 (25%)
Query: 106 AHQNAIFDLCWIKE-DTNILTASGDQTIKIWD--AEKKK-----CTGALMGHTGSIKSLC 157
            HQ   + L W    +  +L+AS D TI +WD  A  K+           GHT  ++ + 
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217
            H  +  +  S + D    IWD R  ++ K                      S  V    
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKP---------------------SHTVDAHT 277
Query: 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277
           A    ++   Y   E  +AT SA +  V  WD RNLK ++     H +     +   H  
Sbjct: 278 AEVNCLSFNPY--SEFILATGSA-DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-- 332
Query: 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
                  N   L +S  D R++++++ ++ +           E     +E  P     + 
Sbjct: 333 -------NETILASSGTDRRLHVWDLSKIGE-----------EQSTEDAEDGPPELLFIH 374
Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
           G                       H  +++  +W PNE   I + S+D  +++W +
Sbjct: 375 GG----------------------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 80/207 (38%), Gaps = 43/207 (20%)
Query: 63  KNSHIFAVSDEDGYVSLFDSRRKL----PSFACHRENAEKARISDWVAHQNAIFDLCWIK 118
           +N HI A       V +FD  +      PS  C+ +     R+     HQ   + L W  
Sbjct: 137 QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPD----LRLR---GHQKEGYGLSWNS 189
Query: 119 E-DTNILTASGDQTIKIWDAEKKKCTGALM-------GHTGSIKSLCSHPTNSDILVSGS 170
               ++L+AS D T+ +WD       G ++       GH+  ++ +  H  +  +  S +
Sbjct: 190 NLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVA 249
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
            D    IWD R               S+   K +HL      V    A    ++   Y  
Sbjct: 250 DDQKLXIWDTR---------------SNTTSKPSHL------VDAHTAEVNCLSFNPY-- 286
Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQI 257
            E  +AT SA +  V  WD RNLK ++
Sbjct: 287 SEFILATGSA-DKTVALWDLRNLKLKL 312

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 105/296 (35%), Gaps = 74/296 (25%)
Query: 106 AHQNAIFDLCWIKE-DTNILTASGDQTIKIWD--AEKKK-----CTGALMGHTGSIKSLC 157
            HQ   + L W    +  +L+AS D TI +WD  A  K+           GHT  ++ + 
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217
            H  +  +  S + D    IWD R  ++ K                      S  V    
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKP---------------------SHTVDAHT 281
Query: 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277
           A    ++   Y   E  +AT SA +  V  WD RNLK ++     H +     +   H  
Sbjct: 282 AEVNCLSFNPY--SEFILATGSA-DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-- 336
Query: 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
                  N   L +S  D R++++++ ++ +           E     +E  P     + 
Sbjct: 337 -------NETILASSGTDRRLHVWDLSKIGE-----------EQSTEDAEDGPPELLFIH 378
Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
           G                       H  +++  +W PNE   I + S+D  +++W +
Sbjct: 379 GG----------------------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 105/296 (35%), Gaps = 74/296 (25%)
Query: 106 AHQNAIFDLCWIKE-DTNILTASGDQTIKIWD--AEKKK-----CTGALMGHTGSIKSLC 157
            HQ   + L W    +  +L+AS D TI +WD  A  K+           GHT  ++ + 
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217
            H  +  +  S + D    IWD R  ++ K                      S  V    
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKP---------------------SHTVDAHT 279
Query: 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277
           A    ++   Y   E  +AT SA +  V  WD RNLK ++     H +     +   H  
Sbjct: 280 AEVNCLSFNPY--SEFILATGSA-DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-- 334
Query: 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
                  N   L +S  D R++++++ ++ +           E     +E  P     + 
Sbjct: 335 -------NETILASSGTDRRLHVWDLSKIGE-----------EQSTEDAEDGPPELLFIH 376
Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
           G                       H  +++  +W PNE   I + S+D  +++W +
Sbjct: 377 GG----------------------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	512
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.64
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.64
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.63
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.62
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.54
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.49
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.46
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.46
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.41
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.4
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.37
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.36
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.35
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.32
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.29
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.29
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.28
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.18
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.16
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.07
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.05
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.04
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.04
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.0
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.97
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.94
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.89
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.88
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.88
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.87
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.85
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.83
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.81
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.66
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.63
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.62
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.62
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.61
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.56
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.55
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.55
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.54
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.53
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.5
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.5
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.49
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.48
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.45
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.44
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.42
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.42
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.42
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.41
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.39
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.38
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.37
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.36
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.35
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.34
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.31
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.27
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.26
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.23
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.19
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.17
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.16
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.16
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.15
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.09
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.08
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.07
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.07
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.07
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.05
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.9
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.89
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.88
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.85
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.82
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.82
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.78
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.71
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.71
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.68
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.66
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.63
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.58
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.56
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.51
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.47
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.22
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.18
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.16
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.15
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.12
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.1
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.1
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.08
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.08
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.01
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.95
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.93
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.9
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.88
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.77
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.75
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.67
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.29
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.09
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.08
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.02
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.96
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.85
3ott_A	758	Two-component system sensor histidine kinase; beta	95.71
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.66
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.44
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.35
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.29
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.24
3ott_A	758	Two-component system sensor histidine kinase; beta	94.75
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.7
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.26
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.67
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.33
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.43
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	88.85
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.38
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.55
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	86.82
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.46

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.7e-47  Score=363.39  Aligned_cols=290  Identities=21%  Similarity=0.331  Sum_probs=255.4

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      ...+.||.++|++++|   +|++.+||+|+.||.|+|||+.++..             ...+.+|.+.|++++|+|++++
T Consensus       101 ~~~l~gh~~~V~~~~~---~p~~~~l~s~s~Dg~i~vwd~~~~~~-------------~~~l~~h~~~V~~v~~~~~~~~  164 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIF---HPVFSVMVSASEDATIKVWDYETGDF-------------ERTLKGHTDSVQDISFDHSGKL  164 (410)
T ss_dssp             SCEEECCSSCEEEEEE---CSSSSEEEEEESSSCEEEEETTTCCC-------------CEEECCCSSCEEEEEECTTSSE
T ss_pred             eEeecccCCcEEEEEE---cCCCCEEEEEeCCCeEEEEECCCCcE-------------EEEEeccCCcEEEEEEcCCCCE
Confidence            3456799999999999   99999999999999999999987643             6778899999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      |++|+.|++|+|||+.+++++..+.+|...|.+++|+|++ .+|++|+.|++|++||++++...                
T Consensus       165 l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~----------------  227 (410)
T 1vyh_C          165 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----------------  227 (410)
T ss_dssp             EEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred             EEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----------------
Confidence            9999999999999999999999999999999999999988 89999999999999999865432                


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ  282 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (512)
                                 ..+.+|...|.++.+++++..+++ |+.|+.|++||+++.....           .+..|...|.+++|
T Consensus       228 -----------~~~~~h~~~v~~~~~~~~g~~l~s-~s~D~~v~vwd~~~~~~~~-----------~~~~h~~~v~~~~~  284 (410)
T 1vyh_C          228 -----------KTFTGHREWVRMVRPNQDGTLIAS-CSNDQTVRVWVVATKECKA-----------ELREHRHVVECISW  284 (410)
T ss_dssp             -----------EEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCCEEE-----------EECCCSSCEEEEEE
T ss_pred             -----------EEEeCCCccEEEEEECCCCCEEEE-EcCCCeEEEEECCCCceee-----------EecCCCceEEEEEE
Confidence                       245578889999999999998887 4589999999999877654           35677788999999


Q ss_pred             CCC--------------------CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390          283 DSN--------------------GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG  342 (512)
Q Consensus       283 ~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  342 (512)
                      +|+                    +.+|++|+.|+.|++||+++.  ..+..+.+|  ...+.+++|+|++++|++|+.|+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~  360 (410)
T 1vyh_C          285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGH--DNWVRGVLFHSGGKFILSCADDK  360 (410)
T ss_dssp             CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--EEEEEEECC--SSCEEEEEECSSSSCEEEEETTT
T ss_pred             cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC--ceEEEEECC--CCcEEEEEEcCCCCEEEEEeCCC
Confidence            996                    678999999999999999763  345555555  35688899999999999999999


Q ss_pred             CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          343 NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       343 ~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      .|++||+.+++. ...+.+|...|++++|+|++ .+|++|+.||+|++|+++
T Consensus       361 ~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~-~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          361 TLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEEEECCTTSCC-CEEEECCSSCEEEEEECSSS-SCEEEEETTSEEEEEC--
T ss_pred             eEEEEECCCCce-EEEEcCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Confidence            999999988765 57889999999999999999 899999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.6e-47  Score=349.85  Aligned_cols=300  Identities=21%  Similarity=0.294  Sum_probs=256.6

Q ss_pred             CceeeeeeEeecCCccCCcceEEEEEecC----CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCc
Q 010390           35 DFTEIGAVTVEHHGEETPPLAVSFCKTSK----NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA  110 (512)
Q Consensus        35 ~~~~~~~~~~~~~gh~~~v~~v~~~~~s~----~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  110 (512)
                      +....+.++...++|.+.|.+|+|   +|    ++.+||+|+.|+.|+|||+.....           .....+.+|...
T Consensus        17 ~~~~~g~~~~~~~~H~~~V~~v~~---~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-----------~~~~~l~gh~~~   82 (321)
T 3ow8_A           17 GTNQYGILFKQEQAHDDAIWSVAW---GTNKKENSETVVTGSLDDLVKVWKWRDERL-----------DLQWSLEGHQLG   82 (321)
T ss_dssp             ----CEEEEEETTSSSSCEEEEEE---C-------CEEEEEETTSCEEEEEEETTEE-----------EEEEEECCCSSC
T ss_pred             hhhhhhheeeecccCCCcEEEEEE---ecCCCCCCCEEEEEcCCCCEEEEECCCCCe-----------eeeeeeccCCCC
Confidence            346678888899999999999999   65    467999999999999999875421           224567899999


Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390          111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC  190 (512)
Q Consensus       111 V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  190 (512)
                      |.+++|++++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++ .+|++++.||.|++||++++...    
T Consensus        83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~----  157 (321)
T 3ow8_A           83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE----  157 (321)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE----
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee----
Confidence            9999999999999999999999999999999999999999999999999998 89999999999999999865422    


Q ss_pred             ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390          191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                                             ..+..+...+.+++|+|+++.+++ |+.|+.|++||+++++...           .+
T Consensus       158 -----------------------~~~~~~~~~v~~~~~spdg~~las-g~~dg~i~iwd~~~~~~~~-----------~~  202 (321)
T 3ow8_A          158 -----------------------YSLDTRGKFILSIAYSPDGKYLAS-GAIDGIINIFDIATGKLLH-----------TL  202 (321)
T ss_dssp             -----------------------EEEECSSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTTEEEE-----------EE
T ss_pred             -----------------------EEecCCCceEEEEEECCCCCEEEE-EcCCCeEEEEECCCCcEEE-----------EE
Confidence                                   133456678999999999999887 5589999999999887654           35


Q ss_pred             cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      ..|...|.+++|+|++++|++++.|+.|++||++..  .....+.++  ...+.+++|+|++++|++|+.|+.|++||+.
T Consensus       203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA--NLAGTLSGH--ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC--CEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc--ceeEEEcCC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            677888999999999999999999999999998753  334455554  3568899999999999999999999999999


Q ss_pred             CCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          351 KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       351 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      +++. ...+.+|.+.|.+++|+|++ .+|++++.||.|++||..
T Consensus       279 ~~~~-~~~~~~h~~~v~~v~~s~~g-~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          279 TRTC-VHTFFDHQDQVWGVKYNGNG-SKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTEE-EEEECCCSSCEEEEEECTTS-SEEEEEETTCCEEEEECC
T ss_pred             CCEE-EEEEcCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEeCC
Confidence            8766 46788999999999999999 899999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.3e-46  Score=349.17  Aligned_cols=291  Identities=17%  Similarity=0.261  Sum_probs=250.6

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .....+.||.++|.+++|   +||+++||+|+.||.|+|||..++.             .+..+..|...|.+++|+|++
T Consensus        46 ~~~~~l~gH~~~v~~~~~---s~d~~~l~s~s~Dg~v~iWd~~~~~-------------~~~~~~~~~~~v~~~~~s~~~  109 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHW---GTDSRLLLSASQDGKLIIWDSYTTN-------------KVHAIPLRSSWVMTCAYAPSG  109 (340)
T ss_dssp             CEEEEECCCSSCEEEEEE---CTTSSEEEEEETTTEEEEEETTTCC-------------EEEEEECSSSCEEEEEECTTS
T ss_pred             hhheeecCCCCceEEEEE---CCCCCEEEEEeCCCcEEEEECCCCC-------------cceEeecCCccEEEEEECCCC
Confidence            445678999999999999   9999999999999999999987663             366678899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          121 TNILTASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      ++|++|+.|+.|++||+.++    +....+.+|.+.|.++.|++++  .+++++.|+.|++||+++++.           
T Consensus       110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~-----------  176 (340)
T 1got_B          110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQ-----------  176 (340)
T ss_dssp             SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEE-----------
T ss_pred             CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcE-----------
Confidence            99999999999999999875    3456778999999999999865  599999999999999986532           


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                      ...+.+|...|.+++|+|++..+++ |+.|+.|++||++++....           .+..|...
T Consensus       177 ----------------~~~~~~h~~~v~~~~~~~~~~~l~s-g~~d~~v~~wd~~~~~~~~-----------~~~~h~~~  228 (340)
T 1got_B          177 ----------------TTTFTGHTGDVMSLSLAPDTRLFVS-GACDASAKLWDVREGMCRQ-----------TFTGHESD  228 (340)
T ss_dssp             ----------------EEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCSEEE-----------EECCCSSC
T ss_pred             ----------------EEEEcCCCCceEEEEECCCCCEEEE-EeCCCcEEEEECCCCeeEE-----------EEcCCcCC
Confidence                            2245578889999999999998877 5589999999999876654           45678889


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                      |.+++|+|++.+|++++.||.|++||++...  .+..+........+.+++|+|++++|++|+.|+.|++||+.+... .
T Consensus       229 v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~  305 (340)
T 1got_B          229 INAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-A  305 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-E
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE-e
Confidence            9999999999999999999999999987532  233333333334588899999999999999999999999988765 4


Q ss_pred             ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      ..+.+|.+.|++++|+|++ .+|++|+.||.|+|||
T Consensus       306 ~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          306 GVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred             eEeecCCCcEEEEEEcCCC-CEEEEEcCCccEEecC
Confidence            6788999999999999999 8999999999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1e-45  Score=346.37  Aligned_cols=311  Identities=18%  Similarity=0.279  Sum_probs=248.8

Q ss_pred             eeEeecCCccC-CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           41 AVTVEHHGEET-PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        41 ~~~~~~~gh~~-~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      .+...+.+|.+ .|.+++|   +|+|++||+|+.||.|+|||+.++..          ........+|...|.+++|+|+
T Consensus         6 ~~~~~~~~h~~~~v~~l~~---sp~g~~las~~~D~~i~iw~~~~~~~----------~~~~~~~~~h~~~v~~~~~sp~   72 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAW---NPAGTLLASCGGDRRIRIWGTEGDSW----------ICKSVLSEGHQRTVRKVAWSPC   72 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEE---CTTSSCEEEEETTSCEEEEEEETTEE----------EEEEEECSSCSSCEEEEEECTT
T ss_pred             EEeeeecCCCCCcEEEEEE---CCCCCEEEEEcCCCeEEEEEcCCCcc----------eeeeeeccccCCcEEEEEECCC
Confidence            45677889988 8999999   99999999999999999999876521          0112234689999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          120 DTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      +++|++|+.|++|+|||+.++  +++..+.+|...|.+++|+|++ ++|++|+.|+.|++||++.....           
T Consensus        73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~-----------  140 (345)
T 3fm0_A           73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEY-----------  140 (345)
T ss_dssp             SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCE-----------
T ss_pred             CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCe-----------
Confidence            999999999999999998776  4677889999999999999988 89999999999999999754321           


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                   .....+..|...|.+++|+|++..+++ ++.|+.|++||.++.......         .+.+|...|
T Consensus       141 -------------~~~~~~~~h~~~v~~~~~~p~~~~l~s-~s~d~~i~~w~~~~~~~~~~~---------~~~~h~~~v  197 (345)
T 3fm0_A          141 -------------ECVSVLNSHTQDVKHVVWHPSQELLAS-ASYDDTVKLYREEEDDWVCCA---------TLEGHESTV  197 (345)
T ss_dssp             -------------EEEEEECCCCSCEEEEEECSSSSCEEE-EETTSCEEEEEEETTEEEEEE---------EECCCSSCE
T ss_pred             -------------EEEEEecCcCCCeEEEEECCCCCEEEE-EeCCCcEEEEEecCCCEEEEE---------EecCCCCce
Confidence                         112245578889999999999998887 558999999999876533211         467788899


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc-------------eEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP-------------IQHFSGCRIESFYVKSEICPNASHILSGSSDGNA  344 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------------~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  344 (512)
                      .+++|+|++++|++++.|++|++||........             +..+.+ .....+.+++|+|++..|++++.|+.|
T Consensus       198 ~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i  276 (345)
T 3fm0_A          198 WSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAI  276 (345)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeE
Confidence            999999999999999999999999974322111             111111 133568889999999999999999999


Q ss_pred             EEEecCCCCCCC--------ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          345 YVWQVNKPQADP--------IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       345 ~iw~~~~~~~~~--------~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      ++|+........        ....+|...|++++|+|+++.+|++|+.||.|++|++.+++...
T Consensus       277 ~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          277 RVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             EEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             EEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence            999987653211        12357999999999999985699999999999999999887544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.8e-45  Score=334.66  Aligned_cols=295  Identities=16%  Similarity=0.233  Sum_probs=247.0

Q ss_pred             eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      +...+.+|.+.|.+|+|   +|++++||+|+.||.|+|||++++.             .+..+..|...|.+++|+|+++
T Consensus         5 ~~~~~~~h~~~V~~~~f---sp~~~~l~s~~~dg~v~lWd~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~   68 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDF---HPTEPWVLTTLYSGRVELWNYETQV-------------EVRSIQVTETPVRAGKFIARKN   68 (304)
T ss_dssp             CEEEEEEECSCEEEEEE---CSSSSEEEEEETTSEEEEEETTTTE-------------EEEEEECCSSCEEEEEEEGGGT
T ss_pred             eEEeecCCCCceEEEEE---CCCCCEEEEEcCCCcEEEEECCCCc-------------eeEEeeccCCcEEEEEEeCCCC
Confidence            35567899999999999   9999999999999999999997753             3677889999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      +|++|+.|++|++||+.+++++..+.+|...|++++|+|++ .+|++|+.|++|++||++++..                
T Consensus        69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~----------------  131 (304)
T 2ynn_A           69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWA----------------  131 (304)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTE----------------
T ss_pred             EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcc----------------
Confidence            99999999999999999999999999999999999999988 8999999999999999875421                


Q ss_pred             cccccccccccceecccccccEEEEEEeec-CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKD-EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                ....+.+|...|.+++|+|+ +..+++ |+.|+.|++||+++......          ....+...+..+
T Consensus       132 ----------~~~~~~~h~~~v~~v~~~p~~~~~l~s-gs~D~~v~iwd~~~~~~~~~----------~~~~~~~~v~~~  190 (304)
T 2ynn_A          132 ----------LEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQSTPNFT----------LTTGQERGVNYV  190 (304)
T ss_dssp             ----------EEEEECCCCSCEEEEEECTTCTTEEEE-EETTSEEEEEETTCSSCSEE----------EECCCTTCEEEE
T ss_pred             ----------hhhhhcccCCcEEEEEECCCCCCEEEE-EeCCCeEEEEECCCCCccce----------eccCCcCcEEEE
Confidence                      11245578889999999995 455555 66899999999987655433          233455678888


Q ss_pred             EeCC--CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          281 SQDS--NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       281 ~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      .+++  ++.+|++++.|+.|++||++..  ..+..+.+|.  ..+..++|+|++++|++|+.||.|++||+.+.+. ...
T Consensus       191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~--~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~-~~~  265 (304)
T 2ynn_A          191 DYYPLPDKPYMITASDDLTIKIWDYQTK--SCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-EKT  265 (304)
T ss_dssp             EECCSTTCCEEEEEETTSEEEEEETTTT--EEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEE
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEeCCCC--ccceeeCCCC--CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce-eee
Confidence            8876  7789999999999999999763  4455666654  4578899999999999999999999999998775 467


Q ss_pred             eccccCCeEEEEeCCCCCC-eEEEEeCCCcEEEEeCCCC
Q 010390          359 LKSHDGEVTAVNWCPNEAG-KIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~  396 (512)
                      +..|...+.+++|+|++.. ++++|+.|| +.+|++.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          266 LNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             ECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred             ccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence            8889999999999998744 477776655 788887653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.4e-45  Score=342.48  Aligned_cols=292  Identities=16%  Similarity=0.205  Sum_probs=247.6

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .....+.||.++|++++|   +|++++||+|+.||.|+|||..+...             ...+..|...|.+++|+|++
T Consensus        55 ~~~~~l~gH~~~V~~~~~---s~d~~~l~s~s~Dg~v~vWd~~~~~~-------------~~~~~~~~~~v~~~~~sp~g  118 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDW---CKDKRRIVSSSQDGKVIVWDSFTTNK-------------EHAVTMPCTWVMACAYAPSG  118 (354)
T ss_dssp             CEEEEEECCSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTTCCE-------------EEEEECSSSCCCEEEECTTS
T ss_pred             EEEEEecCCCCeEEEEEE---CCCCCEEEEEeCCCeEEEEECCCCCc-------------ceEEecCCCCEEEEEECCCC
Confidence            345678899999999999   99999999999999999999876532             55567788999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCC------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          121 TNILTASGDQTIKIWDAEKK------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      .+|++|+.|+.+++|++...      .....+.+|...|.+++|+|++ ..|++++.|++|++||+++++..        
T Consensus       119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~--------  189 (354)
T 2pbi_B          119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL--------  189 (354)
T ss_dssp             SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE--------
T ss_pred             CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE--------
Confidence            99999999999999998653      2345567899999999999987 89999999999999999865432        


Q ss_pred             eeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET  272 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  272 (512)
                                         ..+.+|...|.++.++|+  +..+++ |+.||.|++||+++++...           .+..
T Consensus       190 -------------------~~~~~h~~~v~~~~~~~~~~g~~l~s-gs~Dg~v~~wd~~~~~~~~-----------~~~~  238 (354)
T 2pbi_B          190 -------------------QSFHGHGADVLCLDLAPSETGNTFVS-GGCDKKAMVWDMRSGQCVQ-----------AFET  238 (354)
T ss_dssp             -------------------EEEECCSSCEEEEEECCCSSCCEEEE-EETTSCEEEEETTTCCEEE-----------EECC
T ss_pred             -------------------EEEcCCCCCeEEEEEEeCCCCCEEEE-EeCCCeEEEEECCCCcEEE-----------EecC
Confidence                               245578889999999885  456665 6689999999999887654           3567


Q ss_pred             cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390          273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       273 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~  352 (512)
                      |...|.+++|+|++.+|++++.|++|++||++...  .+..+..+.....+.+++|+|++++|++|+.|+.|++||+.++
T Consensus       239 h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  316 (354)
T 2pbi_B          239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR--EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG  316 (354)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence            88899999999999999999999999999997532  2333333333345778999999999999999999999999887


Q ss_pred             CCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          353 QADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       353 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      .. ...+.+|.+.|++++|+|++ .+|++|+.||+|++|+
T Consensus       317 ~~-~~~l~~h~~~v~~l~~spdg-~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          317 SR-VSILFGHENRVSTLRVSPDG-TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SE-EEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred             ce-EEEEECCCCcEEEEEECCCC-CEEEEEcCCCCEEecC
Confidence            65 46788999999999999999 8999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-44  Score=334.59  Aligned_cols=300  Identities=15%  Similarity=0.289  Sum_probs=247.8

Q ss_pred             eeeeeEeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390           38 EIGAVTVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW  116 (512)
Q Consensus        38 ~~~~~~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  116 (512)
                      +.-.+...+.||.++|.+|+|   +|++ ++|++|+.|+.|++||+.....        ....++..+.+|...|.+++|
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~---~~~~~~~l~s~s~D~~v~~W~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~   73 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLAT---SAGQPNLLLSASRDKTLISWKLTGDDQ--------KFGVPVRSFKGHSHIVQDCTL   73 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEE---CSSCTTEEEEEETTSEEEEEEEEEETT--------EEEEEEEEEECCSSCEEEEEE
T ss_pred             eEEEEEEEEccccceEEEEEc---cCCCccEEEEecCCccEEEecCCCCCc--------cccccceEEeCCcccEEEEEE
Confidence            445667789999999999999   8865 8999999999999999865322        112346778999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          117 IKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       117 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      +|++++|++|+.|++|+|||+.+++++..+.+|...|.+++|+|++ .+|++|+.|++|++||++..             
T Consensus        74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~-------------  139 (319)
T 3frx_A           74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ-------------  139 (319)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC-------------
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-------------
Confidence            9999999999999999999999999999999999999999999988 89999999999999998632             


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCC------EEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV------SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                                     ....+.+|...+.++.+.|...      .+++ ++.|+.|++||+++.+...           .+
T Consensus       140 ---------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~-----------~~  192 (319)
T 3frx_A          140 ---------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIIS-AGNDKMVKAWNLNQFQIEA-----------DF  192 (319)
T ss_dssp             ---------------EEEEECCCSSCEEEEEECCC------CCEEEE-EETTSCEEEEETTTTEEEE-----------EE
T ss_pred             ---------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEE-EeCCCEEEEEECCcchhhe-----------ee
Confidence                           1224457888999999998543      4554 6689999999999876554           46


Q ss_pred             cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      .+|...|.+++|+|++++|++++.||.|++||+...  ..+..+..   ...+.+++|+|++.+|++++.++ +++|++.
T Consensus       193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~--~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~  266 (319)
T 3frx_A          193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK--KAMYTLSA---QDEVFSLAFSPNRYWLAAATATG-IKVFSLD  266 (319)
T ss_dssp             CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEEEEEEC---CSCEEEEEECSSSSEEEEEETTE-EEEEEET
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEecC---CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeC
Confidence            678889999999999999999999999999998763  23344433   24588899999999999988655 9999987


Q ss_pred             CCCCC-------CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          351 KPQAD-------PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       351 ~~~~~-------~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      .....       ......|...+.+++|+|++ ++|++|+.||.|++||+.++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG-QTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             TEEEEEEECCCCTTCCGGGCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEEC
T ss_pred             cCeeeeccCccccccccCcCcceeEEEECCCC-CEEEEeecCceEEEEEEeec
Confidence            64321       11123467789999999999 89999999999999998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-45  Score=343.58  Aligned_cols=303  Identities=16%  Similarity=0.163  Sum_probs=236.1

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  124 (512)
                      ....|...|.+++|   +|||++|++++ |+.+++||........  ...............|...|++++|+|++ .|+
T Consensus        25 ~~~~~~~~v~~~~f---s~dG~~l~~~s-d~~~r~Wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~   97 (344)
T 4gqb_B           25 APACMERQLEAARY---RSDGALLLGAS-SLSGRCWAGSLWLFKD--PCAAPNEGFCSAGVQTEAGVADLTWVGER-GIL   97 (344)
T ss_dssp             SCSSCCSEEEEEEE---CTTSCEEEEEE-CCSSSCCCEEEEEESS--GGGTTCGGGCSEEEEESSCEEEEEEETTT-EEE
T ss_pred             CcccccCCEEEEEE---CCCCCEEEEEe-CCceEEeeceeeeecc--ccccCCcceeeeeeccCCCEEEEEEeCCC-eEE
Confidence            34457777888888   99999999887 7788888742110000  00001111122234567889999999985 788


Q ss_pred             EEeCCCcEEEEeCCCCeeeec----ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          125 TASGDQTIKIWDAEKKKCTGA----LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      +|+.||+|+|||+.+++.+..    +.+|.+.|++++|+|++ ++|++|+.|++|++||+++++.               
T Consensus        98 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~---------------  161 (344)
T 4gqb_B           98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVV---------------  161 (344)
T ss_dssp             EEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE---------------
T ss_pred             EEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE---------------
Confidence            999999999999999876543    34899999999999988 8999999999999999986532               


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                  ...+.+|...|.+++|++++..++++++.|+.|++||+++++.....         ....+...+.++
T Consensus       162 ------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------~~~~~~~~~~~~  220 (344)
T 4gqb_B          162 ------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI---------GCSAPGYLPTSL  220 (344)
T ss_dssp             ------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC---------C----CCCEEEE
T ss_pred             ------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee---------ecceeeccceee
Confidence                        23566889999999999999876666779999999999988766543         233445668999


Q ss_pred             EeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEecCCCCCCCce
Q 010390          281 SQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       281 ~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      +|+|+ +.+|++|+.||.|++||+++.  ..+..+.+|.  ..+.+++|+|++ ++|++|+.|++|+|||+.+++.  ..
T Consensus       221 ~~~p~~~~~l~sg~~dg~v~~wd~~~~--~~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~--~~  294 (344)
T 4gqb_B          221 AWHPQQSEVFVFGDENGTVSLVDTKST--SCVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--FR  294 (344)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEESCC----CCEEEECCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE--EE
T ss_pred             eecCCCCcceEEeccCCcEEEEECCCC--cEEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE--EE
Confidence            99984 578899999999999999764  4556666654  568899999997 5799999999999999988764  46


Q ss_pred             eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +.+|.+.|++++|+|++..+|+++|.||+|++|++.+..
T Consensus       295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            789999999999999986678899999999999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.7e-46  Score=354.35  Aligned_cols=306  Identities=14%  Similarity=0.263  Sum_probs=249.8

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      ......+.||.++|++++|   +|++++||+|+.||.|+|||..++.             ....+..|...|.+++|+|+
T Consensus        56 ~~~~~~l~gH~~~V~~~~~---sp~~~~l~s~s~D~~v~iWd~~~~~-------------~~~~~~~h~~~v~~~~~s~~  119 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDW---TPEKNWIVSASQDGRLIVWNALTSQ-------------KTHAIKLHCPWVMECAFAPN  119 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEE---CTTSSCEEEEETTSEEEEEETTTTE-------------EEEEEECCCTTCCCCEECTT
T ss_pred             eEEeecccccccEEEEEEE---cCCCCEEEEEeCCCeEEEEECCCCc-------------cceEEecCCCCEEEEEECCC
Confidence            4456778999999999999   9999999999999999999987653             36678899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCe-------eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccc
Q 010390          120 DTNILTASGDQTIKIWDAEKKK-------CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAE  192 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  192 (512)
                      +++|++|+.|+.|+|||+.+..       ....+.+|.+.|.++.|+|+++..|++|+.|++|++||+++++......  
T Consensus       120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~--  197 (380)
T 3iz6_a          120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFG--  197 (380)
T ss_dssp             SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEEC--
T ss_pred             CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEee--
Confidence            9999999999999999987532       3456789999999999999876889999999999999998765332110  


Q ss_pred             ceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc
Q 010390          193 SFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET  272 (512)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  272 (512)
                                          .....+|...|.++.|++.+..++++|+.|+.|++||++.......          .+.+
T Consensus       198 --------------------~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~----------~~~~  247 (380)
T 3iz6_a          198 --------------------SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR----------TYHG  247 (380)
T ss_dssp             --------------------CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE----------EECC
T ss_pred             --------------------cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE----------EECC
Confidence                                0012467889999999884444444577899999999985432221          4677


Q ss_pred             cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece-----eceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390          273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-----IESFYVKSEICPNASHILSGSSDGNAYVW  347 (512)
Q Consensus       273 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  347 (512)
                      |...|.+++|+|++.+|++++.||+|++||++...  .+..+..+.     ....+.+++|+|+|++|++|+.||.|++|
T Consensus       248 h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw  325 (380)
T 3iz6_a          248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW  325 (380)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred             cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc--EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence            88999999999999999999999999999997643  222332221     11246789999999999999999999999


Q ss_pred             ecCCCCCCCcee----ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          348 QVNKPQADPIKL----KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       348 ~~~~~~~~~~~~----~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      |+..++.. ..+    .+|.+.|++++|+|++ .+|++|+.||+|++|++...+
T Consensus       326 d~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          326 DTLLAEMV-LNLGTLQNSHEGRISCLGLSSDG-SALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             ETTTCCEE-EEECCSCSSCCCCCCEEEECSSS-SEEEEECTTSCEEEEECCSSS
T ss_pred             ECCCCceE-EEEecccCCCCCceEEEEECCCC-CEEEEeeCCCCEEEEecCCCc
Confidence            99876642 233    6899999999999999 899999999999999998764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.5e-44  Score=363.01  Aligned_cols=333  Identities=15%  Similarity=0.202  Sum_probs=252.6

Q ss_pred             EeecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      ...+.||.+.|.+|+|   +|++. +|++|+.|+.|++||....             +....+.+|.+.|++++|+|+++
T Consensus       140 ~~~l~gh~~~v~~v~f---~p~~~~~l~s~s~D~~v~lwd~~~~-------------~~~~~l~~H~~~V~~v~fspdg~  203 (611)
T 1nr0_A          140 NGNLTGQARAMNSVDF---KPSRPFRIISGSDDNTVAIFEGPPF-------------KFKSTFGEHTKFVHSVRYNPDGS  203 (611)
T ss_dssp             CBCCCCCSSCEEEEEE---CSSSSCEEEEEETTSCEEEEETTTB-------------EEEEEECCCSSCEEEEEECTTSS
T ss_pred             cceecCCCCCceEEEE---CCCCCeEEEEEeCCCeEEEEECCCC-------------eEeeeeccccCceEEEEECCCCC
Confidence            3467899999999999   99987 6999999999999997653             33667889999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeeccc-------CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc-
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALM-------GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES-  193 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-  193 (512)
                      +|++|+.|++|++||+.+++++..+.       +|.+.|.+++|+|++ .+|++++.|++|++||+++++......... 
T Consensus       204 ~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence            99999999999999999998887773       799999999999988 899999999999999998765433221100 


Q ss_pred             ---eeeeccc----------ccccc--cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          194 ---FVFSSAV----------VKGAH--LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       194 ---~~~~~~~----------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                         ......+          .....  ..........+.+|...|.+++|+|+++.+++++ .|+.|++||+.++.....
T Consensus       283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRV  361 (611)
T ss_dssp             GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEC
T ss_pred             ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeee
Confidence               0000000          00000  0011122335568999999999999999998754 899999999987654322


Q ss_pred             ccCCCcccc-----------------------------------------------------------------------
Q 010390          259 QAWPHAESS-----------------------------------------------------------------------  267 (512)
Q Consensus       259 ~~~~~~~~~-----------------------------------------------------------------------  267 (512)
                      ....+....                                                                       
T Consensus       362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~  441 (611)
T 1nr0_A          362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK  441 (611)
T ss_dssp             SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred             cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence            110000000                                                                       


Q ss_pred             ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390          268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW  347 (512)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  347 (512)
                      .....+...+.+++|+|+|++|++|+.|+.|++||+.......... .  .+...+.+++|+|++++|++++.|+.|++|
T Consensus       442 ~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~--~h~~~v~~v~fspdg~~las~s~d~~v~~w  518 (611)
T 1nr0_A          442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-I--VHPAEITSVAFSNNGAFLVATDQSRKVIPY  518 (611)
T ss_dssp             EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-E--ECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-c--CCCCceEEEEECCCCCEEEEEcCCCCEEEE
Confidence            0000123457899999999999999999999999986532111222 2  234568899999999999999999999999


Q ss_pred             ecCC-CCCCCc-eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          348 QVNK-PQADPI-KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       348 ~~~~-~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ++.+ .+.... .+.+|...|++++|+|++ ++|++|+.|++|++||+.+++
T Consensus       519 ~~~~~~~~~~~~~~~~H~~~V~~v~fspdg-~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          519 SVANNFELAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             EGGGTTEESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTT
T ss_pred             EcCCCCceeeeeeeeecccceeEEEECCCC-CEEEEEECCCcEEEEECCCcc
Confidence            9987 433222 234599999999999999 899999999999999998765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.2e-45  Score=341.47  Aligned_cols=299  Identities=19%  Similarity=0.234  Sum_probs=230.6

Q ss_pred             eEeecCCccCCcceEEEEEecCCCcEEEEeeC------CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDE------DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC  115 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  115 (512)
                      ......+|+..|.+|+|   ||||++||+|+.      ||.|++|+..++.+.         ........+|...|++++
T Consensus        34 p~~~p~~H~~~V~~v~f---SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~---------~~~~~~~~~~~~~V~~~~  101 (357)
T 4g56_B           34 PVTAPACMEVQIGAVRY---RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN---------ESLCTAGVQTEAGVTDVA  101 (357)
T ss_dssp             ------CCCSEEEEEEE---CSSSCEEEEEECSSSSSCCEEEEEESSCC---C---------GGGCSEEEECSSCEEEEE
T ss_pred             CCCCcccccCCEEEEEE---CCCCCEEEEEcCCCCccccCeEEEEECCCCCcc---------eeEecccCCCCCCEEEEE
Confidence            33445679999999999   999999999987      788999998765431         122344567999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCCCCeeeec----ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          116 WIKEDTNILTASGDQTIKIWDAEKKKCTGA----LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       116 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      |+|++. +++++.||+|+|||+.+++....    ..+|...|++++|+|++ ++|++|+.|+.|++||+++++.      
T Consensus       102 ~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~------  173 (357)
T 4g56_B          102 WVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAV------  173 (357)
T ss_dssp             EETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEE------
T ss_pred             EcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcE------
Confidence            999875 55678899999999998875433    34799999999999988 8999999999999999986532      


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE  271 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  271 (512)
                                           ...+..|...|.+++|++++..++++++.|+.|++||+++++.....         ...
T Consensus       174 ---------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---------~~~  223 (357)
T 4g56_B          174 ---------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---------DFC  223 (357)
T ss_dssp             ---------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---------CCT
T ss_pred             ---------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---------eec
Confidence                                 22456788899999999998766656778999999999987765432         234


Q ss_pred             ccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEec
Q 010390          272 TRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQV  349 (512)
Q Consensus       272 ~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~  349 (512)
                      .+...+.+++|+|+ +.+|++|+.|+.|++||+++..  ....+.++  ...+.+++|+|++ ++|++|+.|++|+|||+
T Consensus       224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--~~~~~~~~--~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~  299 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--SAQTSAVH--SQNITGLAYSYHSSPFLASISEDCTVAVLDA  299 (357)
T ss_dssp             TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--GCEEECCC--SSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred             cccccccchhhhhcccceEEEeecccceeEEECCCCc--EeEEEecc--ceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence            45667999999997 5688999999999999997643  44455544  3458889999987 57899999999999999


Q ss_pred             CCCCCCCceeccccCCeEEEEeCC-CCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          350 NKPQADPIKLKSHDGEVTAVNWCP-NEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       350 ~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ++++.  ....+|.+.|++|+|+| ++ .+|+|++.||+|++|++.+..
T Consensus       300 ~~~~~--~~~~~H~~~V~~vafsP~d~-~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          300 DFSEV--FRDLSHRDFVTGVAWSPLDH-SKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             TSCEE--EEECCCSSCEEEEEECSSST-TEEEEEETTSCEEEEECC---
T ss_pred             CCCcE--eEECCCCCCEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCCC
Confidence            88765  34568999999999999 56 899999999999999997643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=6.2e-44  Score=330.13  Aligned_cols=296  Identities=24%  Similarity=0.433  Sum_probs=251.0

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      ..+...+.||.++|.+++|   +|++++||+|+.||.|+||+..++.             ....+.+|...|.+++|+|+
T Consensus        13 ~~~~~~~~gh~~~v~~~~~---s~~~~~l~s~~~dg~i~iw~~~~~~-------------~~~~~~~h~~~v~~~~~~~~   76 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKF---SPNGEWLASSSADKLIKIWGAYDGK-------------FEKTISGHKLGISDVAWSSD   76 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTCC-------------EEEEECCCSSCEEEEEECTT
T ss_pred             ceeEEEEcccCCcEEEEEE---CCCCCEEEEeeCCCeEEEEeCCCcc-------------cchhhccCCCceEEEEEcCC
Confidence            4567788999999999999   9999999999999999999987653             25667899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      +++|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++..             
T Consensus        77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~-------------  142 (312)
T 4ery_A           77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCL-------------  142 (312)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEE-------------
T ss_pred             CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEE-------------
Confidence            9999999999999999999999999999999999999999988 89999999999999999865422             


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                    ..+..|...|.+++|+|++..+++ ++.||.|++||+++++.....          ...+...+..
T Consensus       143 --------------~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~----------~~~~~~~~~~  197 (312)
T 4ery_A          143 --------------KTLPAHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDTASGQCLKTL----------IDDDNPPVSF  197 (312)
T ss_dssp             --------------EEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCCEEEEE----------CCSSCCCEEE
T ss_pred             --------------EEecCCCCcEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeeEE----------eccCCCceEE
Confidence                          244567789999999999998887 558999999999987765432          2334567899


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE-CCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI-CPNASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      ++|+|++++|++++.||.|++||+...  ..+..+.++..........+ .+++.+|++|+.||.|++||+.+++. ...
T Consensus       198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~  274 (312)
T 4ery_A          198 VKFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQK  274 (312)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTT--EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE-EEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh-hhh
Confidence            999999999999999999999998763  34445555443332222333 46789999999999999999988765 578


Q ss_pred             eccccCCeEEEEeCCCCCCeEEEEe--CCCcEEEEeCC
Q 010390          359 LKSHDGEVTAVNWCPNEAGKIVTSS--DDYTVRLWSLE  394 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~~l~s~~--~dg~i~vwd~~  394 (512)
                      +.+|...|.+++|+|++ .+|++++  .|+.|++|+.+
T Consensus       275 ~~~h~~~v~~~~~~p~~-~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          275 LQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ECCCSSCEEEEEECSSS-SEEEEEECTTTCCEEEEECC
T ss_pred             hhccCCcEEEEeecCcC-CceEEEEccCCccEEEecCC
Confidence            88999999999999999 8999887  69999999975

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.7e-44  Score=362.73  Aligned_cols=333  Identities=17%  Similarity=0.205  Sum_probs=254.1

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccc----cccc---------c------------
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFA----CHRE---------N------------   95 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~----~~~~---------~------------   95 (512)
                      .....+.||.+.|.+++|   +|||++||+|+.||.|+|||+.++.....    .+..         +            
T Consensus        50 ~~~~~~~~h~~~v~~~~~---spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~  126 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKT---SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE  126 (611)
T ss_dssp             SCCEEECCCSSCEEEEEE---CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred             ccCeEecCCCCceEEEEE---CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence            445567899999999999   99999999999999999999865432110    0000         0            


Q ss_pred             --------ccccceeccccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeE
Q 010390           96 --------AEKARISDWVAHQNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDIL  166 (512)
Q Consensus        96 --------~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  166 (512)
                              ........+.+|...|++++|+|++. .|++|+.|++|++||..++++...+.+|...|++++|+|++ .+|
T Consensus       127 ~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~l  205 (611)
T 1nr0_A          127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLF  205 (611)
T ss_dssp             CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEE
T ss_pred             ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC-CEE
Confidence                    00123345789999999999999987 59999999999999999999999999999999999999998 899


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEE
Q 010390          167 VSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVK  246 (512)
Q Consensus       167 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~  246 (512)
                      ++++.|++|++||+.+++.......                    ......+|...|.+++|+|++..+++++ .|+.|+
T Consensus       206 as~s~D~~i~lwd~~~g~~~~~~~~--------------------~~~~~~~h~~~V~~v~~spdg~~l~s~s-~D~~v~  264 (611)
T 1nr0_A          206 ASTGGDGTIVLYNGVDGTKTGVFED--------------------DSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIK  264 (611)
T ss_dssp             EEEETTSCEEEEETTTCCEEEECBC--------------------TTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEE
T ss_pred             EEEECCCcEEEEECCCCcEeeeecc--------------------ccccccccCCCEEEEEECCCCCEEEEEe-CCCeEE
Confidence            9999999999999886653221100                    0001226888999999999999988754 899999


Q ss_pred             EEeccCccceecccCCCc--------------------------------cccccccccccCeeEEEeCCCCCEEEEEec
Q 010390          247 FWDTRNLKAQITQAWPHA--------------------------------ESSSAKETRLHGISSLSQDSNGVFLTASCM  294 (512)
Q Consensus       247 iwd~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  294 (512)
                      +||+++++..........                                .......+|...|.+++|+|++++|++++.
T Consensus       265 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~  344 (611)
T 1nr0_A          265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA  344 (611)
T ss_dssp             EEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence            999998765443321100                                011134578889999999999999999999


Q ss_pred             CCeEEEEEcccCCCCc---------eEee-------------------------------------e-------------
Q 010390          295 DHRIYLYNVLQLDKGP---------IQHF-------------------------------------S-------------  315 (512)
Q Consensus       295 dg~i~i~d~~~~~~~~---------~~~~-------------------------------------~-------------  315 (512)
                      |+.|++||+.+.....         +..+                                     .             
T Consensus       345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  424 (611)
T 1nr0_A          345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD  424 (611)
T ss_dssp             TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred             CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence            9999999986432100         0000                                     0             


Q ss_pred             -------------------eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCC
Q 010390          316 -------------------GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEA  376 (512)
Q Consensus       316 -------------------~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~  376 (512)
                                         .......+.+++|+|+|++|++|+.|+.|++||+.+.........+|...|++++|+|++ 
T Consensus       425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg-  503 (611)
T 1nr0_A          425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-  503 (611)
T ss_dssp             CEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS-
T ss_pred             EEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCC-
Confidence                               000112356899999999999999999999999987543212236799999999999999 


Q ss_pred             CeEEEEeCCCcEEEEeCCC-Cccc
Q 010390          377 GKIVTSSDDYTVRLWSLEN-SRCS  399 (512)
Q Consensus       377 ~~l~s~~~dg~i~vwd~~~-~~~~  399 (512)
                      ++|++++.|++|++||+.+ +++.
T Consensus       504 ~~las~s~d~~v~~w~~~~~~~~~  527 (611)
T 1nr0_A          504 AFLVATDQSRKVIPYSVANNFELA  527 (611)
T ss_dssp             SEEEEEETTSCEEEEEGGGTTEES
T ss_pred             CEEEEEcCCCCEEEEEcCCCCcee
Confidence            8999999999999999987 5443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.6e-43  Score=330.06  Aligned_cols=307  Identities=16%  Similarity=0.272  Sum_probs=242.8

Q ss_pred             eeeEeecCCccCCcceEEEEE---ecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390           40 GAVTVEHHGEETPPLAVSFCK---TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW  116 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~---~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  116 (512)
                      ..+...+.||.++|++|+|..   .++++++||+|+.|+.|+|||+.......      ........+.+|...|++++|
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~------~~~~~~~~l~~h~~~V~~~~~   84 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG------YFGIPHKALTGHNHFVSDLAL   84 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS------BSEEEEEEECCCSSCEEEEEE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc------ccccccchhccCCCceEEEEE
Confidence            345667889999999998721   13489999999999999999987543210      012345678899999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          117 IKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       117 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      +|++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+......          
T Consensus        85 ~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~----------  153 (343)
T 2xzm_R           85 SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF----------  153 (343)
T ss_dssp             CSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE----------
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee----------
Confidence            9999999999999999999999999999999999999999999988 89999999999999998632110          


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecC----------CEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE----------VSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                                     .......|...|.+++|+|++          ..+++ ++.|+.|++||... ....         
T Consensus       154 ---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~-~~~~---------  207 (343)
T 2xzm_R          154 ---------------SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS-VGWDGRLKVWNTNF-QIRY---------  207 (343)
T ss_dssp             ---------------ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE-EETTSEEEEEETTT-EEEE---------
T ss_pred             ---------------eeecccCCCceeeeeeeccccccccccCCCCCEEEE-EcCCCEEEEEcCCC-ceeE---------
Confidence                           001123567789999999987          45555 66899999999543 2221         


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV  346 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  346 (512)
                        .+..|...|.+++|+|++++|++++.||.|++||+..... ....+..   ...+.+++|+|++.++++|+ |+.|++
T Consensus       208 --~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~---~~~v~~v~~sp~~~~la~~~-d~~v~i  280 (343)
T 2xzm_R          208 --TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY-PQREFDA---GSTINQIAFNPKLQWVAVGT-DQGVKI  280 (343)
T ss_dssp             --EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS-CSEEEEC---SSCEEEEEECSSSCEEEEEE-SSCEEE
T ss_pred             --EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc-cceeecC---CCcEEEEEECCCCCEEEEEC-CCCEEE
Confidence              4567888999999999999999999999999999854322 2222211   23478899999999887665 777999


Q ss_pred             EecCCCCCCC-cee-----------ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          347 WQVNKPQADP-IKL-----------KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       347 w~~~~~~~~~-~~~-----------~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      |++.+.+... ..+           .+|...|++++|+|++ .+|++|+.||.|++|+++++.
T Consensus       281 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          281 FNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG-KKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS-CCEEEEETTSEEEEEEEEEEE
T ss_pred             EEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC-CeEEEecCCceEEEEEEEccC
Confidence            9998765422 122           2688899999999999 899999999999999987653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-43  Score=325.74  Aligned_cols=302  Identities=19%  Similarity=0.232  Sum_probs=230.8

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecc-cc-CCCcEEEEEEec
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-VA-HQNAIFDLCWIK  118 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~l~~s~  118 (512)
                      .+...+.||.++|.+++|   +|+  +||+|+.||.|+|||+..+..           .....+ .+ |...|++++|+|
T Consensus         5 ~~~~~~~~h~~~v~~~~~---s~~--~las~~~D~~i~lw~~~~~~~-----------~~~~~~~~~~h~~~v~~v~~sp   68 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDF---SQG--ILATGSTDRKIKLVSVKYDDF-----------TLIDVLDETAHKKAIRSVAWRP   68 (330)
T ss_dssp             EEEEEEECCSSCEEEEEE---ETT--EEEEEESSSCEEEEECSSSCC-----------EEEEEECTTCCCSCEEEEEECT
T ss_pred             ccceeeccCCCceeeecc---CCC--EEEEEcCCCEEEEEEecCCCe-----------EEEEEEecCCccCCEEEEEECC
Confidence            345678899999999999   776  999999999999999976421           113333 34 999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCC-------CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          119 EDTNILTASGDQTIKIWDAEK-------KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      ++++|++|+.|++|+|||+..       .+++..+.+|...|.+++|+|++ .+|++|+.|++|++||++.....     
T Consensus        69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~-----  142 (330)
T 2hes_X           69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEE-----  142 (330)
T ss_dssp             TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCC-----
T ss_pred             CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCC-----
Confidence            999999999999999999853       35667788999999999999988 89999999999999999533211     


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE  271 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  271 (512)
                                        ......+..|...|.+++|+|++..+++ ++.|+.|++||..+.......         .+.
T Consensus       143 ------------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s-~s~D~~i~iW~~~~~~~~~~~---------~~~  194 (330)
T 2hes_X          143 ------------------YECISVLQEHSQDVKHVIWHPSEALLAS-SSYDDTVRIWKDYDDDWECVA---------VLN  194 (330)
T ss_dssp             ------------------CEEEEEECCCSSCEEEEEECSSSSEEEE-EETTSCEEEEEEETTEEEEEE---------EEC
T ss_pred             ------------------eEEEEEeccCCCceEEEEECCCCCEEEE-EcCCCeEEEEECCCCCeeEEE---------Ecc
Confidence                              1122345678889999999999998887 558999999998765311111         467


Q ss_pred             ccccCeeEEEeCCC--CCEEEEEecCCeEEEEEcccCCCCc------eEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390          272 TRLHGISSLSQDSN--GVFLTASCMDHRIYLYNVLQLDKGP------IQHFSGCRIESFYVKSEICPNASHILSGSSDGN  343 (512)
Q Consensus       272 ~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  343 (512)
                      +|...|.+++|+|+  +.+|++++.|++|++||+.......      ...+.. .+...+.+++|++++ +|++++.||.
T Consensus       195 ~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~  272 (330)
T 2hes_X          195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGV  272 (330)
T ss_dssp             CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSC
T ss_pred             CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCE
Confidence            78889999999998  7799999999999999986542211      111111 134568899999665 8999999999


Q ss_pred             EEEEecCCCCC--CCceeccccC-CeEEEEeCC--CCCCeEEEEeCCCcEEEEeCCC
Q 010390          344 AYVWQVNKPQA--DPIKLKSHDG-EVTAVNWCP--NEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       344 i~iw~~~~~~~--~~~~~~~h~~-~v~~v~~~~--~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      |++|+..++..  ......+|.. .|.+++|+|  ++ .+|++|+.||.|++||++.
T Consensus       273 v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~-~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          273 LAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGK-TILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEEETTEEEEEEEESCTTTTSCEEEEEEC------CCEEEEETTSEEEEEEC--
T ss_pred             EEEEEcCCCceEEEeccccccccceEEEEEEecCCCc-eEEEEecCCCcEEEEEecc
Confidence            99999976532  1123357877 899999999  56 8999999999999999865

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.7e-43  Score=333.04  Aligned_cols=308  Identities=22%  Similarity=0.316  Sum_probs=238.1

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccc-----ccccceeccccCCCcEEEEEEecCCC
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHREN-----AEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      .+|.+.|.+++|   +|||++||+|+ ++.++||++.++..........     ...........+...|++++|+|+++
T Consensus        61 ~~h~~~V~~v~f---spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           61 LDHTSVVCCVKF---SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             EECSSCCCEEEE---CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             cCCCCEEEEEEE---CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence            369999999999   99999999987 7899999998764321110000     00000001112334599999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      +|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++...              
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~--------------  201 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL--------------  201 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE--------------
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEE--------------
Confidence            99999999999999999999999999999999999999988 899999999999999998654221              


Q ss_pred             cccccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                    ...+...+.+++|+| ++..+++ |+.|+.|++||++++...........    ....|...|.++
T Consensus       202 --------------~~~~~~~v~~~~~~~~~~~~l~~-~s~d~~v~iwd~~~~~~~~~~~~~~~----~~~~h~~~v~~v  262 (393)
T 1erj_A          202 --------------TLSIEDGVTTVAVSPGDGKYIAA-GSLDRAVRVWDSETGFLVERLDSENE----SGTGHKDSVYSV  262 (393)
T ss_dssp             --------------EEECSSCEEEEEECSTTCCEEEE-EETTSCEEEEETTTCCEEEEEC----------CCCSSCEEEE
T ss_pred             --------------EEEcCCCcEEEEEECCCCCEEEE-EcCCCcEEEEECCCCcEEEeeccccc----CCCCCCCCEEEE
Confidence                          112445799999999 6666665 66899999999998775543321111    235678899999


Q ss_pred             EeCCCCCEEEEEecCCeEEEEEcccCCC----------CceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          281 SQDSNGVFLTASCMDHRIYLYNVLQLDK----------GPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      +|+|++++|++++.|+.|++||+.....          .....+.+|  ...+.+++|+|++++|++|+.|+.|++||+.
T Consensus       263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~  340 (393)
T 1erj_A          263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKK  340 (393)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            9999999999999999999999875322          112233333  3568889999999999999999999999999


Q ss_pred             CCCCCCceeccccCCeEEEEeCC------CCCCeEEEEeCCCcEEEEeCCCC
Q 010390          351 KPQADPIKLKSHDGEVTAVNWCP------NEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       351 ~~~~~~~~~~~h~~~v~~v~~~~------~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      +++. ...+.+|.+.|.+++|++      ++ .+|++|+.||+|++|++...
T Consensus       341 ~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~~-~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          341 SGNP-LLMLQGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             TCCE-EEEEECCSSCEEEEEECSSCTTCTTC-EEEEEEETTSEEEEEEEEEC
T ss_pred             CCeE-EEEECCCCCCEEEEEecCCcCcCCCC-CEEEEECCCCcEEECccccc
Confidence            8776 467889999999999986      56 79999999999999998643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.6e-41  Score=318.01  Aligned_cols=304  Identities=15%  Similarity=0.261  Sum_probs=246.9

Q ss_pred             eeeeeEeecCCccCCcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390           38 EIGAVTVEHHGEETPPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW  116 (512)
Q Consensus        38 ~~~~~~~~~~gh~~~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  116 (512)
                      +...+...++||.+.|++|+|   +|+ +++||+|+.||.|+|||+.+....        ...+...+.+|...|.+++|
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~---sp~~~~~l~S~s~D~~i~vWd~~~~~~~--------~~~~~~~l~~h~~~V~~~~~   94 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIAT---TPQFPDMILSASRDKTIIMWKLTRDETN--------YGIPQRALRGHSHFVSDVVI   94 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEE---CTTCTTEEEEEETTSCEEEEEECCSSSC--------SEEEEEEECCCSSCEEEEEE
T ss_pred             CceEEEEEECCccCCEEEEEE---eCCCCCEEEEEcCCCeEEEEECCCCCcc--------cceeeEEEeCCCCCEEEEEE
Confidence            344566679999999999999   987 689999999999999999865431        12346678899999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          117 IKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       117 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      +|++++|++++.|+.|++|+............+...+..+.+++.+ .+|++++.|+.+++||+.....           
T Consensus        95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~-----------  162 (340)
T 4aow_A           95 SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCK-----------  162 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEE-----------
T ss_pred             CCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCce-----------
Confidence            9999999999999999999999998888888888999999999987 8999999999999999864321           


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                     .......|...+..++|++++. .++++++.|+.|++||+++.+...           .+..|..
T Consensus       163 ---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~-----------~~~~h~~  216 (340)
T 4aow_A          163 ---------------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT-----------NHIGHTG  216 (340)
T ss_dssp             ---------------EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE-----------EECCCSS
T ss_pred             ---------------EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee-----------EecCCCC
Confidence                           1123446778899999988754 344556789999999999887655           4567788


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC-
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA-  354 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~-  354 (512)
                      .|++++|+|++++|++++.||.|++||++..  ..+..+..   ...+..++|+|++.+++ ++.|+.|++||+++... 
T Consensus       217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--~~~~~~~~---~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~  290 (340)
T 4aow_A          217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--KHLYTLDG---GDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIV  290 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTT--EEEEEEEC---SSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEeccC--ceeeeecC---CceEEeeecCCCCceee-ccCCCEEEEEECCCCeEE
Confidence            9999999999999999999999999998753  33334433   24578899999876655 55689999999986532 


Q ss_pred             -------CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          355 -------DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       355 -------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                             ......+|...|++++|+|++ .+|++|+.||.|+|||+.+|+
T Consensus       291 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          291 DELKQEVISTSSKAEPPQCTSLAWSADG-QTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEECCC-------CCCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEC--
T ss_pred             EeccccceeeeccCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEeCCCcC
Confidence                   112345788999999999999 899999999999999999885

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.6e-41  Score=341.74  Aligned_cols=364  Identities=18%  Similarity=0.297  Sum_probs=275.4

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      ..++||+++|++|+|   ||||++||+|+.|+.|+|||.. +             +.+..+.+|.+.|++++|+|++++|
T Consensus        10 ~~L~GH~~~V~~~a~---spdg~~las~~~d~~v~iWd~~-~-------------~~~~~l~gh~~~V~~l~fspdg~~l   72 (577)
T 2ymu_A           10 NRLEAHSSSVRGVAF---SPDGQTIASASDDKTVKLWNRN-G-------------QLLQTLTGHSSSVWGVAFSPDGQTI   72 (577)
T ss_dssp             EEECCCSSCEEEEEE---CTTSSCEEEEETTSEEEEECTT-S-------------CEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             eEECCCCCcEEEEEE---CCCCCEEEEEeCCCEEEEEECC-C-------------CEEEEEeCCCCCEEEEEECCCCCEE
Confidence            458899999999999   9999999999999999999963 2             2367789999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      ++++.|++|+|||+ +++++..+.+|...|.+++|+|++ .+|++++.|+.+++|+...............+........
T Consensus        73 as~~~d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  150 (577)
T 2ymu_A           73 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD  150 (577)
T ss_dssp             EEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTT
T ss_pred             EEEeCCCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCC-CEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecC
Confidence            99999999999995 678888999999999999999988 8999999999999999764432211111111111111111


Q ss_pred             cc-------------cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390          204 AH-------------LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       204 ~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                      ..             .............+...+.++.++|++..+++ ++.|+.|++||... +...           ..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~w~~~~-~~~~-----------~~  217 (577)
T 2ymu_A          151 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS-ASDDKTVKLWNRNG-QLLQ-----------TL  217 (577)
T ss_dssp             SSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEE-EETTSEEEEECTTS-CEEE-----------EE
T ss_pred             CccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEE-EcCCCEEEEEeCCC-cEEE-----------EE
Confidence            00             01112223345677889999999999999887 55899999999643 2222           45


Q ss_pred             cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      ..|...|.+++|+|++.+|++++.|+.|++||..   ...+..+.++  ...+.+++|+|++++|++++.|+.|++|+..
T Consensus       218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~---~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~  292 (577)
T 2ymu_A          218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLWNRN  292 (577)
T ss_dssp             ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT---SCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC---CCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC
Confidence            6777889999999999999999999999999963   3344555544  3568889999999999999999999999975


Q ss_pred             CCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccccCCCC--
Q 010390          351 KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEP--  428 (512)
Q Consensus       351 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  428 (512)
                      ..  ....+.+|...|.+++|+|++ .+|++++.|+.|++||+........   ..+...+.++.+.+..+.++.+..  
T Consensus       293 ~~--~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~~~dg  366 (577)
T 2ymu_A          293 GQ--LLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHLQTL---TGHSSSVWGVAFSPDGQTIASASDDK  366 (577)
T ss_dssp             SC--EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             Cc--EEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeeEEE---eCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            43  245788999999999999999 8999999999999999876654332   222344445555544444332211  


Q ss_pred             -----------------cccccCCCCcCCCchhcccCCCC
Q 010390          429 -----------------GWLAKGSDRSYNSDDVLNQINSS  451 (512)
Q Consensus       429 -----------------~~~~~~~~~~~~p~~~~~~~~~~  451 (512)
                                       +...+. .++|+||+++++.++.
T Consensus       367 ~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~~~  405 (577)
T 2ymu_A          367 TVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASD  405 (577)
T ss_dssp             EEEEEETTCCEEEEEECCSSCEE-EEEECTTSSCEEEEET
T ss_pred             EEEEEcCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEeC
Confidence                             111122 5788999988877643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.3e-41  Score=310.04  Aligned_cols=260  Identities=13%  Similarity=0.205  Sum_probs=222.1

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      ...++.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++ ++|++|+.|+.|++||
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEE
Confidence            366788999999999999999999999999999999999999999999999999999999988 8999999999999999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~  259 (512)
                      +.+++.                           ...+.+|...|.+++|+|++..+++ |+.|+.|++||+++...... 
T Consensus        84 ~~~~~~---------------------------~~~~~~h~~~v~~~~~~~~~~~l~s-gs~D~~v~lWd~~~~~~~~~-  134 (304)
T 2ynn_A           84 YNTGEK---------------------------VVDFEAHPDYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWALEQ-  134 (304)
T ss_dssp             TTTCCE---------------------------EEEEECCSSCEEEEEECSSSSEEEE-EETTSCEEEEEGGGTTEEEE-
T ss_pred             CCCCcE---------------------------EEEEeCCCCcEEEEEEcCCCCEEEE-ECCCCeEEEEECCCCcchhh-
Confidence            986543                           2245678899999999999998887 55899999999987644332 


Q ss_pred             cCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC--CCCEEE
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP--NASHIL  336 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~  336 (512)
                               .+..|...|.+++|+| ++.+|++++.|+.|++||+.....  ...+.... ...+..++|+|  ++.+|+
T Consensus       135 ---------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~~~l~  202 (304)
T 2ynn_A          135 ---------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQ-ERGVNYVDYYPLPDKPYMI  202 (304)
T ss_dssp             ---------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--SEEEECCC-TTCEEEEEECCSTTCCEEE
T ss_pred             ---------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--cceeccCC-cCcEEEEEEEEcCCCCEEE
Confidence                     4667888999999999 678999999999999999966432  22222211 23355677766  788999


Q ss_pred             EecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       337 ~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      +|+.|+.|++||+++++. ...+.+|...|.+++|+|++ .+|++|+.||.|++||+.++++++.+.
T Consensus       203 s~s~D~~i~iWd~~~~~~-~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~~~~~~~  267 (304)
T 2ynn_A          203 TASDDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVEKTLN  267 (304)
T ss_dssp             EEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEcCCCeEEEEeCCCCcc-ceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeecc
Confidence            999999999999998765 57889999999999999999 899999999999999999998777643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-40  Score=314.24  Aligned_cols=308  Identities=16%  Similarity=0.230  Sum_probs=258.0

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .-...+.||.++|.+++|   +|++++||+|+.||.|+|||+.++.             .+..+.+|.+.|.+++|+|++
T Consensus        23 ~~~~~l~~h~~~v~~~~~---s~~~~~l~~~~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~   86 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKY---NKEGDLLFSCSKDSSASVWYSLNGE-------------RLGTLDGHTGTIWSIDVDCFT   86 (369)
T ss_dssp             EEEEEEECCSSCEEEEEE---CTTSCEEEEEESSSCEEEEETTTCC-------------EEEEECCCSSCEEEEEECTTS
T ss_pred             cccEEEEEeeceEEEEEE---cCCCCEEEEEeCCCEEEEEeCCCch-------------hhhhhhhcCCcEEEEEEcCCC
Confidence            334568899999999999   9999999999999999999997763             367788999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC-----CcEEEEeCCCCCCCCCcccccee
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD-----GSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      ++|++++.||.|++||+.+++.+..+. +...|.+++|+|++ .+|++++.+     +.|++||+............   
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~---  161 (369)
T 3zwl_B           87 KYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKV---  161 (369)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE---
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeeccc---
Confidence            999999999999999999999988888 88899999999988 899999998     99999999876544322110   


Q ss_pred             eecccccccccccccccceecccccc--cEEEEEEeecCCEEEEEeecCCeEEEEeccCc-cceecccCCCccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASM--SITSVLYLKDEVSIATASAVNSIVKFWDTRNL-KAQITQAWPHAESSSAKET  272 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~  272 (512)
                                   ..........+..  .+.+++|+|++..+++ ++.||.|++||+++. ....           ....
T Consensus       162 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~-----------~~~~  216 (369)
T 3zwl_B          162 -------------SEEPIHKIITHEGLDAATVAGWSTKGKYIIA-GHKDGKISKYDVSNNYEYVD-----------SIDL  216 (369)
T ss_dssp             -------------CSSCSEEEECCTTCCCEEEEEECGGGCEEEE-EETTSEEEEEETTTTTEEEE-----------EEEC
T ss_pred             -------------ccceeeeccCCcCccceeEEEEcCCCCEEEE-EcCCCEEEEEECCCCcEeEE-----------EEec
Confidence                         1112223344455  8999999999998887 558999999999983 3332           3566


Q ss_pred             cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC----------
Q 010390          273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG----------  342 (512)
Q Consensus       273 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg----------  342 (512)
                      |...|.+++|+|++.+|++++.||.|++||+....  ....+.   ....+..++|+|+++++++++.++          
T Consensus       217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  291 (369)
T 3zwl_B          217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSAN  291 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEE---CSSCEEEEEECSSSSEEEEEECCC----------
T ss_pred             CCCceeEEEECCCCCEEEEecCCceEEEEECCCCc--eeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecC
Confidence            77889999999999999999999999999997633  333333   345577899999999999999888          


Q ss_pred             ----CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          343 ----NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       343 ----~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                          .+++||+.+.+. ...+.+|...|++++|+|++ .+|++++.||.|++|+++.+.....
T Consensus       292 ~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          292 EGKFEARFYHKIFEEE-IGRVQGHFGPLNTVAISPQG-TSYASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             ---CEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEEECHHHHTCC
T ss_pred             CCcceeEEEecCCCcc-hhheecccCcEEEEEECCCC-CEEEEEcCCCeEEEEECccccchhH
Confidence                899999988776 46788999999999999999 8999999999999999998765443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.2e-42  Score=330.32  Aligned_cols=301  Identities=14%  Similarity=0.156  Sum_probs=229.2

Q ss_pred             eecCCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCC
Q 010390           44 VEHHGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDT  121 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~  121 (512)
                      ....+|...|+||+|   +| ++++||+|+.||.|+|||+.++..           .....+.+|.+.|++|+|+| ++.
T Consensus       113 ~~~~~~~~~V~~l~~---~P~~~~~lasGs~dg~i~lWd~~~~~~-----------~~~~~~~gH~~~V~~l~f~p~~~~  178 (435)
T 4e54_B          113 QKAAPFDRRATSLAW---HPTHPSTVAVGSKGGDIMLWNFGIKDK-----------PTFIKGIGAGGSITGLKFNPLNTN  178 (435)
T ss_dssp             CEEEECSSCEEEEEE---CSSCTTCEEEEETTSCEEEECSSCCSC-----------CEEECCCSSSCCCCEEEECSSCTT
T ss_pred             ccCCCCCCCEEEEEE---eCCCCCEEEEEeCCCEEEEEECCCCCc-----------eeEEEccCCCCCEEEEEEeCCCCC
Confidence            345678899999999   88 567999999999999999976543           23556779999999999998 789


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      +|++|+.||+|+|||++++.......  .+...+.+++|+|++ .+|++|+.||.|++||++...               
T Consensus       179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~---------------  242 (435)
T 4e54_B          179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE---------------  242 (435)
T ss_dssp             EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB---------------
T ss_pred             EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce---------------
Confidence            99999999999999998765433333  344567899999988 899999999999999986432               


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                   ...+..|...|.+++|+|++..++++|+.|+.|++||+++.+......        ....|...|++
T Consensus       243 -------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~--------~~~~h~~~v~~  301 (435)
T 4e54_B          243 -------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL--------YSLPHRHPVNA  301 (435)
T ss_dssp             -------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS--------BCCBCSSCEEE
T ss_pred             -------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE--------Eeeeccccccc
Confidence                         113457888999999999998777778899999999998866543221        34567889999


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeecee----ceeEEEEEECCCCCEEEEec------------CCCC
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI----ESFYVKSEICPNASHILSGS------------SDGN  343 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~g~------------~dg~  343 (512)
                      ++|+|++.+|++++.||.|++||+.....  ...+..+..    ........|+|++.+++++.            .++.
T Consensus       302 ~~~spdg~~l~s~~~D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  379 (435)
T 4e54_B          302 ACFSPDGARLLTTDQKSEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT  379 (435)
T ss_dssp             CCBCTTSSEEEEEESSSCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred             eeECCCCCeeEEEcCCCEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence            99999999999999999999999976433  222222111    11122345555555555443            3467


Q ss_pred             EEEEecCCCCCCCceeccccCCeEEE-EeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          344 AYVWQVNKPQADPIKLKSHDGEVTAV-NWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       344 i~iw~~~~~~~~~~~~~~h~~~v~~v-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      |++||..+++.......+|...|.++ +|+|++ .+|++|+ |+.|+|||+++++..
T Consensus       380 i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg-~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG-DTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             EEEECSSSCCEEEEECCSSCCCCCCEEEECTTS-SCEEEEC-SSEEEECCCC-----
T ss_pred             EEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC-CEEEEEc-CCcEEEEECCcCeee
Confidence            99999998876444456788889887 699999 7888876 789999999998754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-41  Score=325.55  Aligned_cols=312  Identities=13%  Similarity=0.269  Sum_probs=246.9

Q ss_pred             ccCCcceEEEEEecCCCc-EEEEe----------eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe
Q 010390           49 EETPPLAVSFCKTSKNSH-IFAVS----------DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI  117 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~-~latg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  117 (512)
                      +..+|.+++|   +|+++ +||+|          +.||.|+|||+.+....          ..+.. ..|...|++++|+
T Consensus        11 ~~~~v~~~~~---sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------~~~~~-~~~~~~v~~~~~s   76 (416)
T 2pm9_A           11 EFSRTATFAW---SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------KPIAS-LQVDSKFNDLDWS   76 (416)
T ss_dssp             EEEESCBCCB---CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------SCSCC-CCCSSCEEEEEEC
T ss_pred             hhhhcceEee---CCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC----------cEEEE-EecCCceEEEEEC
Confidence            3456778888   99997 99999          89999999999865320          11222 3588999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCC----CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          118 KEDTNILTASGDQTIKIWDAEK----KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       118 ~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      |++++|++|+.||.|++||+.+    .+.+..+.+|...|.+++|+|+++.+|++++.||.|++||+.+.........  
T Consensus        77 ~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--  154 (416)
T 2pm9_A           77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT--  154 (416)
T ss_dssp             SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC--
T ss_pred             CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc--
Confidence            9999999999999999999987    4578888999999999999998558999999999999999987652110000  


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR  273 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  273 (512)
                                      .........|...|.+++|+|++..++++++.|+.|++||+++.+.........     ....|
T Consensus       155 ----------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~~  213 (416)
T 2pm9_A          155 ----------------PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS-----PNSGI  213 (416)
T ss_dssp             ----------------CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC-----CSSCC
T ss_pred             ----------------ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc-----ccccc
Confidence                            000112346788999999999954444446689999999999887665432211     12233


Q ss_pred             ccCeeEEEeCCCC-CEEEEEecCC---eEEEEEcccCCCCceEeee-eceeceeEEEEEECC-CCCEEEEecCCCCEEEE
Q 010390          274 LHGISSLSQDSNG-VFLTASCMDH---RIYLYNVLQLDKGPIQHFS-GCRIESFYVKSEICP-NASHILSGSSDGNAYVW  347 (512)
Q Consensus       274 ~~~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iw  347 (512)
                      ...|.+++|+|++ .++++++.|+   .|++||++... .....+. ++  ...+.+++|+| ++++|++++.||.|++|
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~w  290 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLW  290 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence            6789999999997 6899999998   99999997642 2333333 33  35688999999 89999999999999999


Q ss_pred             ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          348 QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       348 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      |+.+++. ...+.+|...|++++|+|+++.+|++++.||.|++||+.+++....
T Consensus       291 d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          291 NPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             CSSSCCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred             eCCCCcc-ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence            9998765 5678899999999999999867999999999999999998876554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.6e-40  Score=339.24  Aligned_cols=298  Identities=15%  Similarity=0.250  Sum_probs=239.8

Q ss_pred             eEeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      +...+++|.+.|++|+|   +|++ ++|++|+.||.|+|||+.+....        .......+.+|...|.+++|+|++
T Consensus       374 ~~~~l~~H~~~V~~v~~---~~~~~~~l~s~s~D~~i~~W~~~~~~~~--------~~~~~~~~~~h~~~v~~v~~s~~g  442 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIAT---PIDNADIIVSASRDKSIILWKLTKDDKA--------YGVAQRRLTGHSHFVEDVVLSSDG  442 (694)
T ss_dssp             EEEEEECCSSCEEEEEC---CTTCCSEEEEEETTSEEEEEECCCSTTC--------SCEEEEEEECCSSCEEEEEECTTS
T ss_pred             hhhhcccCCceeEEEEe---cCCCCCEEEEEeCCCcEEEEEccCCCcc--------cccccceecCCCCcEEEEEECCCC
Confidence            34567899999999998   8764 79999999999999998764321        112356688999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      ++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||+.......             
T Consensus       443 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~-------------  508 (694)
T 3dm0_A          443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYT-------------  508 (694)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEE-------------
T ss_pred             CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCccee-------------
Confidence            999999999999999999999999999999999999999988 899999999999999975321100             


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                 .......|...|.+++|+|++. .++++++.|+.|++||+++.+...           .+..|...|.+
T Consensus       509 -----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~-----------~~~~h~~~v~~  566 (694)
T 3dm0_A          509 -----------ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS-----------TLAGHTGYVST  566 (694)
T ss_dssp             -----------ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE-----------EECCCSSCEEE
T ss_pred             -----------eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE-----------EEcCCCCCEEE
Confidence                       0012246778899999999873 344456789999999999876554           46678889999


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      ++|+|++++|++++.||.|++||+.+..  .+..+.   ....+.+++|+|++.+|++++. +.|++||+.+.... ..+
T Consensus       567 v~~spdg~~l~sg~~Dg~i~iwd~~~~~--~~~~~~---~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~-~~~  639 (694)
T 3dm0_A          567 VAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLE---ANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIV-EDL  639 (694)
T ss_dssp             EEECTTSSEEEEEETTSBCEEEETTTTE--EEECCB---CSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEE-EEE
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEECCCCc--eEEEec---CCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCCh-hhh
Confidence            9999999999999999999999997642  233332   2345888999999998888764 55999999876532 222


Q ss_pred             cc-------------------ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          360 KS-------------------HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       360 ~~-------------------h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      ..                   +...+++++|+|++ .+|++|+.||.|+||++.
T Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg-~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          640 KVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG-STLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CCCCC----------------CCCCEEEEEECTTS-SEEEEEETTSEEEEEEC-
T ss_pred             ccccccccccccccccccCCceeEEeeeEEEcCCC-CEEEEEcCCCeEEEEecc
Confidence            11                   12247899999999 899999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.8e-40  Score=330.87  Aligned_cols=284  Identities=22%  Similarity=0.404  Sum_probs=244.5

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .+...+.+|.+.|.+++|   +|++++|++++.||.|++||....              .+..+.+|...|.+++|+|++
T Consensus       294 ~~~~~~~~h~~~v~~~~~---~~~~~~l~t~~~d~~i~~w~~~~~--------------~~~~~~~~~~~v~~~~~s~~g  356 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAF---SPDGQTIASASDDKTVKLWNRNGQ--------------HLQTLTGHSSSVWGVAFSPDG  356 (577)
T ss_dssp             CEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTSC--------------EEEEECCCSSCEEEEEECTTS
T ss_pred             cEEEEEecCCCCeEEEEE---CCCCCEEEEEeCCCeEEEEeCCCC--------------eeEEEeCCCCCEEEEEECCCC
Confidence            445667899999999999   999999999999999999997643              255678899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      ++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||... +                
T Consensus       357 ~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~----------------  417 (577)
T 2ymu_A          357 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-Q----------------  417 (577)
T ss_dssp             SEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-C----------------
T ss_pred             CEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-C----------------
Confidence            99999999999999995 677888899999999999999988 8999999999999999542 1                


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                 ....+..|...|.+++|+|+++.+++++ .|+.|++||... +...           ....|...|.++
T Consensus       418 -----------~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~-~~~~-----------~~~~~~~~v~~~  473 (577)
T 2ymu_A          418 -----------LLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNG-QLLQ-----------TLTGHSSSVRGV  473 (577)
T ss_dssp             -----------EEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTS-CEEE-----------EEECCSSCEEEE
T ss_pred             -----------EEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCC-CEEE-----------EEcCCCCCEEEE
Confidence                       1224557888999999999999988754 899999999754 2222           456778899999


Q ss_pred             EeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390          281 SQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK  360 (512)
Q Consensus       281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~  360 (512)
                      +|+|++++|++++.|+.|++||..   ...+..+.+|.  ..+.+++|+|++++|++++.||.|++||.. ++. +..+.
T Consensus       474 ~~spd~~~las~~~d~~i~iw~~~---~~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~-~~~~~  546 (577)
T 2ymu_A          474 AFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL-LQTLT  546 (577)
T ss_dssp             EECTTSCEEEEEETTSEEEEEETT---SCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSEEEEECTT-SCE-EEEEE
T ss_pred             EEcCCCCEEEEEeCCCEEEEEcCC---CCEEEEEeCCC--CCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCE-EEEEc
Confidence            999999999999999999999953   34566666654  568899999999999999999999999964 333 56788


Q ss_pred             cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       361 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      +|.+.|++++|+||+ ++|+|++.|++|++||
T Consensus       547 ~h~~~v~~~~fs~dg-~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          547 GHSSSVWGVAFSPDG-QTIASASSDKTVKLWN  577 (577)
T ss_dssp             CCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEEEcCCC-CEEEEEeCCCEEEEeC
Confidence            999999999999999 8999999999999997

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-40  Score=318.46  Aligned_cols=255  Identities=20%  Similarity=0.344  Sum_probs=223.9

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL  180 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  180 (512)
                      ...+.+|.+.|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|++++|+|++ .+|++|+.|++|++||+
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDF  179 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEET
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Confidence            45678999999999999999999999999999999999999999999999999999999988 89999999999999999


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA  260 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~  260 (512)
                      .+.+.                           ...+.+|...|.+++|+|++..+++ |+.|+.|++||++++....   
T Consensus       180 ~~~~~---------------------------~~~~~~h~~~V~~v~~~p~~~~l~s-~s~D~~i~~wd~~~~~~~~---  228 (410)
T 1vyh_C          180 QGFEC---------------------------IRTMHGHDHNVSSVSIMPNGDHIVS-ASRDKTIKMWEVQTGYCVK---  228 (410)
T ss_dssp             TSSCE---------------------------EECCCCCSSCEEEEEECSSSSEEEE-EETTSEEEEEETTTCCEEE---
T ss_pred             CCCce---------------------------eEEEcCCCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCcEEE---
Confidence            76432                           2245578889999999999998887 5589999999999887654   


Q ss_pred             CCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC---------
Q 010390          261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN---------  331 (512)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---------  331 (512)
                              .+..|...|.++.+++++.+|++++.|+.|++||+...  .....+.++  ...+.+++|+|+         
T Consensus       229 --------~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~--~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~  296 (410)
T 1vyh_C          229 --------TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK--ECKAELREH--RHVVECISWAPESSYSSISEA  296 (410)
T ss_dssp             --------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCC--SSCEEEEEECCSCGGGGGGGC
T ss_pred             --------EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC--ceeeEecCC--CceEEEEEEcCcccccchhhh
Confidence                    45678888999999999999999999999999998763  334444444  356888999996         


Q ss_pred             -----------CCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          332 -----------ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       332 -----------~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                                 +.+|++|+.|+.|++||+.++.. ...+.+|...|++++|+|++ .+|++|+.||.|++||+.+++++.
T Consensus       297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~i~vwd~~~~~~~~  374 (410)
T 1vyh_C          297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMK  374 (410)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCE
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEECCCCce-EEEEECCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEE
Confidence                       67899999999999999998776 46788999999999999999 899999999999999999888766


Q ss_pred             c
Q 010390          401 M  401 (512)
Q Consensus       401 ~  401 (512)
                      .
T Consensus       375 ~  375 (410)
T 1vyh_C          375 T  375 (410)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.7e-40  Score=315.71  Aligned_cols=313  Identities=16%  Similarity=0.137  Sum_probs=247.7

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-  119 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-  119 (512)
                      .+...+.+|.++|.+|+|   +|  ++||+|+.||.|+|||+.+....       .....+..+.+|...|++++|+|+ 
T Consensus         7 ~~~~~~~~h~~~i~~~~~---~~--~~l~s~~~dg~i~iw~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~   74 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSA---CN--SFTVSCSGDGYLKVWDNKLLDNE-------NPKDKSYSHFVHKSGLHHVDVLQAI   74 (397)
T ss_dssp             EEEEESSCSSSCEEEEEE---CS--SEEEEEETTSEEEEEESBCCTTC-------CGGGGEEEEECCTTCEEEEEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEe---cC--CeEEEEcCCCEEEEEECCCcccc-------cCCCcceEEecCCCcEEEEEEeccc
Confidence            455678899999999999   77  89999999999999999876421       112346777899999999999999 


Q ss_pred             ---C---CEEEEEeCCCcEEEEeCCCCee-----eecccCc-----CCCEEEEEee----CCCCCe-EEEEeCCCcEEEE
Q 010390          120 ---D---TNILTASGDQTIKIWDAEKKKC-----TGALMGH-----TGSIKSLCSH----PTNSDI-LVSGSRDGSFAIW  178 (512)
Q Consensus       120 ---~---~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~h-----~~~v~~l~~~----~~~~~~-l~s~~~dg~i~vw  178 (512)
                         +   ++|++++.||.|++||+.+++.     ...+..|     ...|.+++|+    |++ .+ |++++.||.|++|
T Consensus        75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iw  153 (397)
T 1sq9_A           75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIW  153 (397)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEE
T ss_pred             ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEE
Confidence               9   9999999999999999998887     7888888     5899999999    887 77 9999999999999


Q ss_pred             eCCC------CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC
Q 010390          179 DLRC------KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN  252 (512)
Q Consensus       179 d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~  252 (512)
                      |++.      ...........+.               ........|...+.+++|+|++ .+++ ++.|+.|++||+++
T Consensus       154 d~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~-~l~~-~~~dg~i~i~d~~~  216 (397)
T 1sq9_A          154 KFHPFADESNSLTLNWSPTLELQ---------------GTVESPMTPSQFATSVDISERG-LIAT-GFNNGTVQISELST  216 (397)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEE---------------EEECCSSSSCCCCCEEEECTTS-EEEE-ECTTSEEEEEETTT
T ss_pred             eCCccccccccceeeccCcceee---------------eeeccccCCCCCceEEEECCCc-eEEE-EeCCCcEEEEECCC
Confidence            9987      3332200000000               0000113567889999999999 5555 66899999999998


Q ss_pred             ccceecccCCCccccccccc---c---ccCeeEEEeCCCCCEEEEEecC---CeEEEEEcccCCCCceEeeeece-----
Q 010390          253 LKAQITQAWPHAESSSAKET---R---LHGISSLSQDSNGVFLTASCMD---HRIYLYNVLQLDKGPIQHFSGCR-----  318 (512)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~-----  318 (512)
                      .+....           ...   |   ...|.+++|+|++.+|++++.|   |.|++||+...  ..+..+....     
T Consensus       217 ~~~~~~-----------~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~  283 (397)
T 1sq9_A          217 LRPLYN-----------FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG--ERIGSLSVPTHSSQA  283 (397)
T ss_dssp             TEEEEE-----------EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC--CEEEEECBC------
T ss_pred             CceeEE-----------EeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC--cccceeccCcccccc
Confidence            766543           344   6   7889999999999999999999   99999999763  3444444410     


Q ss_pred             ------eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec------cc---------------cCCeEEEEe
Q 010390          319 ------IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK------SH---------------DGEVTAVNW  371 (512)
Q Consensus       319 ------~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~------~h---------------~~~v~~v~~  371 (512)
                            ....+.+++|+|++++|++++.||.|++||+.+.+. ...+.      +|               ...|++++|
T Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~  362 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF  362 (397)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred             cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce-eEEEecccCcccchhhhhccccccccccCCceeEEEe
Confidence                  346688999999999999999999999999988765 45666      67               899999999


Q ss_pred             CCCCC---------CeEEEEeCCCcEEEEeCCCCc
Q 010390          372 CPNEA---------GKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       372 ~~~~~---------~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +|++.         .+|++++.||.|++||+.+|+
T Consensus       363 ~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          363 LKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             ECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            99973         499999999999999998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-39  Score=310.06  Aligned_cols=297  Identities=12%  Similarity=0.161  Sum_probs=234.4

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK  118 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~  118 (512)
                      ..+...+.+|.+.|.+++|   +|++ ++||+|+.||.|+|||+.+...           .......+|...|.+++|+|
T Consensus        63 ~~~~~~~~~h~~~v~~~~~---~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~h~~~v~~~~~~~  128 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEW---HPTHPTTVAVGSKGGDIILWDYDVQNK-----------TSFIQGMGPGDAITGMKFNQ  128 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEE---CSSCTTEEEEEEBTSCEEEEETTSTTC-----------EEEECCCSTTCBEEEEEEET
T ss_pred             cceEEeccCCCCCEEEEEE---CCCCCCEEEEEcCCCeEEEEeCCCccc-----------ceeeecCCcCCceeEEEeCC
Confidence            4556678899999999999   9999 8999999999999999987643           12333457999999999999


Q ss_pred             -CCCEEEEEeCCCcEEEEeCCCCeeeeccc---CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          119 -EDTNILTASGDQTIKIWDAEKKKCTGALM---GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       119 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                       ++.+|++++.|+.|++||+.+ ..+..+.   .|...|.+++|+|++ .+|++++.|+.|++||++. +          
T Consensus       129 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~----------  195 (383)
T 3ei3_B          129 FNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDG-H----------  195 (383)
T ss_dssp             TEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTS-C----------
T ss_pred             CCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCC-C----------
Confidence             789999999999999999986 4444443   344789999999988 8999999999999999842 1          


Q ss_pred             eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL  274 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  274 (512)
                                       ....+..|...|.+++|+|++..++++++.|+.|++||+++.+......        ....|.
T Consensus       196 -----------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~  250 (383)
T 3ei3_B          196 -----------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI--------AEMPHE  250 (383)
T ss_dssp             -----------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE--------EEEECS
T ss_pred             -----------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE--------EEecCC
Confidence                             1224557888999999999999444456689999999999743211100        223577


Q ss_pred             cCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeecee---------------ceeEEEEEECCCCCEEEEe
Q 010390          275 HGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI---------------ESFYVKSEICPNASHILSG  338 (512)
Q Consensus       275 ~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~l~~g  338 (512)
                      ..|.+++|+| ++.+|++++.|+.|++||+++.....  .+..+..               ...+..++|+|++++  +|
T Consensus       251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~  326 (383)
T 3ei3_B          251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD--QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LL  326 (383)
T ss_dssp             SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS--EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CT
T ss_pred             CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc--ccccccccccccccceEEeccCCCCceEEEecCCccc--cc
Confidence            8999999999 99999999999999999998754432  2222110               123445777888877  88


Q ss_pred             cCCCCEEEEecCCCCCCCceecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          339 SSDGNAYVWQVNKPQADPIKLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      +.|+.|++||+.+++. ...+.+  |...+..++|+|++ .+|++++ ||.|++||+++
T Consensus       327 s~d~~i~iwd~~~~~~-~~~l~~~~~~~~~~~~~~s~~g-~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          327 NDKRTIDIYDANSGGL-VHQLRDPNAAGIISLNKFSPTG-DVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TCCCCEEEEETTTCCE-EEEECBTTBCSCCCEEEECTTS-SEEEEEE-TTEEEEEECC-
T ss_pred             CCCCeEEEEecCCCce-eeeecCCCCCceEEEEEEecCc-cEEEEec-CCcEEEEecCC
Confidence            8999999999998776 456665  56778888999999 8999997 99999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.4e-39  Score=301.69  Aligned_cols=288  Identities=17%  Similarity=0.225  Sum_probs=241.9

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecc--ccCCCcEEEEEEecCCC
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW--VAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~s~~~~  121 (512)
                      ....+|.++|.+++|   +|++++|++++ ||.|++||+.+....          ..+..+  .+|...|.+++|+|+++
T Consensus        45 ~~~~~h~~~v~~~~~---~~~~~~l~~~~-dg~i~iw~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~  110 (337)
T 1gxr_A           45 INTLNHGEVVCAVTI---SNPTRHVYTGG-KGCVKVWDISHPGNK----------SPVSQLDCLNRDNYIRSCKLLPDGC  110 (337)
T ss_dssp             EEEECCSSCCCEEEE---CSSSSEEEEEC-BSEEEEEETTSTTCC----------SCSEEEECSCTTSBEEEEEECTTSS
T ss_pred             ceeccCCCceEEEEE---ecCCcEEEEcC-CCeEEEEECCCCCce----------eeeecccccCCCCcEEEEEEcCCCC
Confidence            344479999999999   99999999999 999999999875421          112222  37999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          122 NILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      +|++++.||.|++||+.+++  ....+..|...|.+++|+|++ .+|++++.||.|++||+++++.              
T Consensus       111 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~--------------  175 (337)
T 1gxr_A          111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTL--------------  175 (337)
T ss_dssp             EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE--------------
T ss_pred             EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCce--------------
Confidence            99999999999999999887  566778899999999999987 8999999999999999986432              


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                   ...+..|...+.+++|+|++..++++ +.|+.|++||+++++....            ..+...+.+
T Consensus       176 -------------~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~------------~~~~~~v~~  229 (337)
T 1gxr_A          176 -------------VRQFQGHTDGASCIDISNDGTKLWTG-GLDNTVRSWDLREGRQLQQ------------HDFTSQIFS  229 (337)
T ss_dssp             -------------EEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEEEEE------------EECSSCEEE
T ss_pred             -------------eeeeecccCceEEEEECCCCCEEEEE-ecCCcEEEEECCCCceEee------------ecCCCceEE
Confidence                         22445678899999999999988875 4899999999998776542            234567999


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      ++|+|++.+|++++.++.|++||+....   ...+..  ....+.+++|+|++++|++++.||.|++|++.+++..  ..
T Consensus       230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--~~  302 (337)
T 1gxr_A          230 LGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQ  302 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSC---EEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EE
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCC---eEEEcC--CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE--EE
Confidence            9999999999999999999999997643   223333  3456889999999999999999999999999987653  44


Q ss_pred             ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      ..|...|.+++|+|++ .+|++++.||.|++|++.
T Consensus       303 ~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          303 SKESSSVLSCDISVDD-KYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EECSSCEEEEEECTTS-CEEEEEETTSCEEEEEEE
T ss_pred             ecCCCcEEEEEECCCC-CEEEEecCCCeEEEEEEe
Confidence            5688999999999999 899999999999999963

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=306.43  Aligned_cols=304  Identities=17%  Similarity=0.243  Sum_probs=236.9

Q ss_pred             eEeecCCccCCcceEEEEEecCCCc-EEEEeeC---CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSH-IFAVSDE---DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI  117 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~-~latg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  117 (512)
                      +...+.+|.++|.+|+|   +|++. ++++|+.   ||.|+|||+.++..            ......+|...|++++|+
T Consensus        10 ~~~~~~~h~~~v~~~~~---~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~------------~~~~~~~~~~~v~~~~~~   74 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKW---VPCSAKFVTMGNFARGTGVIQLYEIQHGDL------------KLLREIEKAKPIKCGTFG   74 (357)
T ss_dssp             EEEEEEECSSCEEEEEE---CTTSSEEEEEEC--CCCEEEEEEEECSSSE------------EEEEEEEESSCEEEEECT
T ss_pred             hhhhccCCCCceEEEEE---cCCCceEEEecCccCCCcEEEEEeCCCCcc------------cceeeecccCcEEEEEEc
Confidence            34455789999999999   99996 5566665   99999999987542            112233789999999999


Q ss_pred             cC---CCEEEEEeCCCcEEEEeCCCCe-eeecccCcCCCEEEEEe------eCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390          118 KE---DTNILTASGDQTIKIWDAEKKK-CTGALMGHTGSIKSLCS------HPTNSDILVSGSRDGSFAIWDLRCKSSPK  187 (512)
Q Consensus       118 ~~---~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~------~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  187 (512)
                      |+   +.+|++|+.||.|++||+.+++ .+..+.+|...|.++.|      +|++ .+|++++.||.|++||++++....
T Consensus        75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~  153 (357)
T 3i2n_A           75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPV  153 (357)
T ss_dssp             TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCS
T ss_pred             CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcc
Confidence            98   6999999999999999999988 88889999999999965      5666 899999999999999998765211


Q ss_pred             -CccccceeeecccccccccccccccceecccccccEEEEE----EeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390          188 -SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVL----YLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       188 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~  262 (512)
                       ....                       ....+...+.++.    |++++..+++ ++.||.|++||+++.+...     
T Consensus       154 ~~~~~-----------------------~~~~~~~~v~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~-----  204 (357)
T 3i2n_A          154 ANMEP-----------------------VQGENKRDCWTVAFGNAYNQEERVVCA-GYDNGDIKLFDLRNMALRW-----  204 (357)
T ss_dssp             EEECC-----------------------CTTSCCCCEEEEEEECCCC-CCCEEEE-EETTSEEEEEETTTTEEEE-----
T ss_pred             eeccc-----------------------cCCCCCCceEEEEEEeccCCCCCEEEE-EccCCeEEEEECccCceee-----
Confidence             1100                       0011133788888    6788888887 5589999999999877542     


Q ss_pred             CccccccccccccCeeEEEeCC---CCCEEEEEecCCeEEEEEcccCCCCceEee-eeceeceeEEEEEECCCCC-EEEE
Q 010390          263 HAESSSAKETRLHGISSLSQDS---NGVFLTASCMDHRIYLYNVLQLDKGPIQHF-SGCRIESFYVKSEICPNAS-HILS  337 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~-~l~~  337 (512)
                             ...+...|.+++|+|   ++.+|++++.||.|++||++.......... ........+.+++|+|+++ +|++
T Consensus       205 -------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  277 (357)
T 3i2n_A          205 -------ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLT  277 (357)
T ss_dssp             -------EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred             -------ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEE
Confidence                   455667899999999   999999999999999999977544332221 1112345688999999998 8999


Q ss_pred             ecCCCCEEEEecCCCCCC------------------CceeccccCCeEEEEeCCCCCCeEE-EEeCCCcEEEEeCCCCcc
Q 010390          338 GSSDGNAYVWQVNKPQAD------------------PIKLKSHDGEVTAVNWCPNEAGKIV-TSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~------------------~~~~~~h~~~v~~v~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~  398 (512)
                      |+.||.|++||+......                  ...+.+|...|++++|+|++ .+|+ +++.||.|++||+.+.+.
T Consensus       278 ~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          278 AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK-RGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS-TTEEEEEETTSEEEEEEECC---
T ss_pred             EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC-CeEEEEecCCCcEEEEECCCccc
Confidence            999999999999865432                  34577899999999999999 6776 899999999999987653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.1e-40  Score=310.11  Aligned_cols=308  Identities=11%  Similarity=0.160  Sum_probs=242.0

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA  126 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~  126 (512)
                      ..|.++|.+++|   +|++++||+|+.||.|+|||+.++.           ...+..+.+|...|++++|+|++++|+++
T Consensus         5 ~~~~~~i~~~~~---s~~~~~l~~~~~d~~v~i~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   70 (372)
T 1k8k_C            5 SFLVEPISCHAW---NKDRTQIAICPNNHEVHIYEKSGNK-----------WVQVHELKEHNGQVTGVDWAPDSNRIVTC   70 (372)
T ss_dssp             ESCSSCCCEEEE---CTTSSEEEEECSSSEEEEEEEETTE-----------EEEEEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred             cccCCCeEEEEE---CCCCCEEEEEeCCCEEEEEeCCCCc-----------EEeeeeecCCCCcccEEEEeCCCCEEEEE
Confidence            448999999999   9999999999999999999987652           12477788999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCeeeec--ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          127 SGDQTIKIWDAEKKKCTGA--LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       127 ~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      +.||.|++||+.+++....  +..|...|.+++|+|++ .+|++++.|+.|++||++.......                
T Consensus        71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~----------------  133 (372)
T 1k8k_C           71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWV----------------  133 (372)
T ss_dssp             ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEE----------------
T ss_pred             cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCccee----------------
Confidence            9999999999988865433  46789999999999988 8999999999999999986542110                


Q ss_pred             ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc-------CCCccccccccccccCe
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA-------WPHAESSSAKETRLHGI  277 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i  277 (512)
                             .......|...|.+++|+|++..+++ ++.||.|++||++.........       .+.......+..|...|
T Consensus       134 -------~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (372)
T 1k8k_C          134 -------CKHIKKPIRSTVLSLDWHPNSVLLAA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV  205 (372)
T ss_dssp             -------EEEECTTCCSCEEEEEECTTSSEEEE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred             -------eeeeecccCCCeeEEEEcCCCCEEEE-EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence                   01122456789999999999998887 5589999999975322110000       00001111345677889


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC--CC--
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK--PQ--  353 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~--~~--  353 (512)
                      .+++|+|++.+|++++.||.|++||+...  ..+..+..+  ...+.+++|+|++++|++| .|+.|++|++..  +.  
T Consensus       206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~  280 (372)
T 1k8k_C          206 HGVCFSANGSRVAWVSHDSTVCLADADKK--MAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLS  280 (372)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEEGGGT--TEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCC--ceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEE
Confidence            99999999999999999999999999764  345555544  3457889999999999888 899999999987  31  


Q ss_pred             ------------------------------CC------CceeccccCCeEEEEeCCCCC---CeEEEEeCCCcEEEEeCC
Q 010390          354 ------------------------------AD------PIKLKSHDGEVTAVNWCPNEA---GKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       354 ------------------------------~~------~~~~~~h~~~v~~v~~~~~~~---~~l~s~~~dg~i~vwd~~  394 (512)
                                                    ..      .....+|...|++++|.+.+.   .+|+||+.||.|++||+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          281 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             ECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             EeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence                                          00      112258999999999886553   699999999999999998


Q ss_pred             CCcc
Q 010390          395 NSRC  398 (512)
Q Consensus       395 ~~~~  398 (512)
                      +++.
T Consensus       361 ~~~~  364 (372)
T 1k8k_C          361 SLES  364 (372)
T ss_dssp             HHHH
T ss_pred             ChhH
Confidence            7654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8e-40  Score=302.73  Aligned_cols=256  Identities=21%  Similarity=0.361  Sum_probs=216.4

Q ss_pred             eeccccCCCcEEEEEEecC----CCEEEEEeCCCcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390          101 ISDWVAHQNAIFDLCWIKE----DTNILTASGDQTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGS  174 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~----~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  174 (512)
                      ...+++|.+.|++++|+|+    +.+|++|+.|++|+|||+.+++.  ...+.+|...|.+++|++++ .++++++.|++
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~  103 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAH  103 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSE
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCc
Confidence            4556799999999999984    67899999999999999987754  45688999999999999988 89999999999


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      |++||+.+++..                           ..+..+...+.+++|+|+++.+++ |+.|+.|++||+++++
T Consensus       104 i~lWd~~~~~~~---------------------------~~~~~~~~~~~~~~~spdg~~l~~-g~~dg~v~i~~~~~~~  155 (321)
T 3ow8_A          104 IRLWDLENGKQI---------------------------KSIDAGPVDAWTLAFSPDSQYLAT-GTHVGKVNIFGVESGK  155 (321)
T ss_dssp             EEEEETTTTEEE---------------------------EEEECCTTCCCCEEECTTSSEEEE-ECTTSEEEEEETTTCS
T ss_pred             EEEEECCCCCEE---------------------------EEEeCCCccEEEEEECCCCCEEEE-EcCCCcEEEEEcCCCc
Confidence            999999865422                           233456667889999999999887 5589999999999877


Q ss_pred             ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE
Q 010390          255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH  334 (512)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  334 (512)
                      ...           ....+...|.+++|+|++++|++++.||.|++||+.+.  ..+..+.++.  ..+.+++|+|++++
T Consensus       156 ~~~-----------~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~--~~~~~~~~h~--~~v~~l~~spd~~~  220 (321)
T 3ow8_A          156 KEY-----------SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHA--MPIRSLTFSPDSQL  220 (321)
T ss_dssp             EEE-----------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCS--SCCCEEEECTTSCE
T ss_pred             eeE-----------EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEcccC--CceeEEEEcCCCCE
Confidence            654           34556677999999999999999999999999998763  3445555543  45778999999999


Q ss_pred             EEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          335 ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       335 l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      |++|+.|+.|++||+.+... ...+.+|...|.+++|+|++ .+|++++.|++|++||+.+++++..+
T Consensus       221 l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          221 LVTASDDGYIKIYDVQHANL-AGTLSGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             EEEECTTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCeEEEEECCCcce-eEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence            99999999999999988765 46788999999999999999 89999999999999999998877653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=303.39  Aligned_cols=251  Identities=15%  Similarity=0.219  Sum_probs=205.1

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      |...|.+|+|   +|++ .|++|+.||.|+|||+++++...         .....+.+|.+.|++++|+|++++|++|+.
T Consensus        81 ~~~~v~~~~~---s~d~-~l~~~s~dg~v~lWd~~~~~~~~---------~~~~~~~~H~~~V~~v~~spdg~~l~sgs~  147 (344)
T 4gqb_B           81 TEAGVADLTW---VGER-GILVASDSGAVELWELDENETLI---------VSKFCKYEHDDIVSTVSVLSSGTQAVSGSK  147 (344)
T ss_dssp             ESSCEEEEEE---ETTT-EEEEEETTSEEEEEEECTTSSCE---------EEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCCCEEEEEE---eCCC-eEEEEECCCEEEEEeccCCCcee---------EeeccccCCCCCEEEEEECCCCCEEEEEeC
Confidence            5677888888   8885 67899999999999998765421         112345689999999999999999999999


Q ss_pred             CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      |++|+|||+.+++++..+.+|...|++++|++++..+|++++.|++|++||+++++.....                   
T Consensus       148 d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-------------------  208 (344)
T 4gqb_B          148 DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI-------------------  208 (344)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-------------------
T ss_pred             CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeee-------------------
Confidence            9999999999999999999999999999999998778999999999999999876543321                   


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-C
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-V  287 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  287 (512)
                            ....+...+.+++|+|++..++++|+.||.|++||+++++.+.           .+..|...|++++|+|++ +
T Consensus       209 ------~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~-----------~~~~h~~~v~~v~fsp~g~~  271 (344)
T 4gqb_B          209 ------GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL-----------SSAVHSQCVTGLVFSPHSVP  271 (344)
T ss_dssp             ------C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE-----------EEECCSSCEEEEEECSSSSC
T ss_pred             ------ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE-----------EEcCCCCCEEEEEEccCCCe
Confidence                  1123455789999999877776678899999999999887665           467788999999999998 5


Q ss_pred             EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCC
Q 010390          288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~  353 (512)
                      +|++++.|++|++||+...   .+..+.+|  ...|.+++|+|+++ +|++|+.|++|++|++.+..
T Consensus       272 ~lasgs~D~~i~vwd~~~~---~~~~~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          272 FLASLSEDCSLAVLDSSLS---ELFRSQAH--RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CEEEEETTSCEEEECTTCC---EEEEECCC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEEEEeCCCeEEEEECCCC---cEEEEcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            7999999999999998653   23444444  46789999999986 56789999999999997654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.7e-39  Score=307.53  Aligned_cols=309  Identities=13%  Similarity=0.255  Sum_probs=237.2

Q ss_pred             eecCCccCCcceEEEEEecCC----CcEEEEeeCCCcEEEEECCCCCCccccccccccccceec--cccCCCcEEEEEEe
Q 010390           44 VEHHGEETPPLAVSFCKTSKN----SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISD--WVAHQNAIFDLCWI  117 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~----~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~l~~s  117 (512)
                      ....||.++|.+|+|   +|+    ...+++++.++.|+|||+.++...          ..+..  ...|...|++++|+
T Consensus        12 ~~~~~h~~~v~~i~~---~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~   78 (366)
T 3k26_A           12 SLKEDHNQPLFGVQF---NWHSKEGDPLVFATVGSNRVTLYECHSQGEI----------RLLQSYVDADADENFYTCAWT   78 (366)
T ss_dssp             EEECTTCSCEEEEEE---CTTCCTTSCEEEEEEETTEEEEEEECGGGCE----------EEEEEEECSCTTCCEEEEEEE
T ss_pred             EeecCCCCceEEEEE---ecccCCCCceEEEECCCCEEEEEEcCCCcEE----------EeeeeccccCCCCcEEEEEec
Confidence            345689999999999   763    445666666779999999765331          11111  12377899999999


Q ss_pred             cC----CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          118 KE----DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       118 ~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      |+    +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++.+|++++.||.|++||+++++....     
T Consensus        79 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----  153 (366)
T 3k26_A           79 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI-----  153 (366)
T ss_dssp             ECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE-----
T ss_pred             cCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE-----
Confidence            98    679999999999999999999999999999999999999994449999999999999999986542211     


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC-----CC-----
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW-----PH-----  263 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~-----~~-----  263 (512)
                                         ......|...|.+++|+|++..+++++ .||.|++||+++.+.......     +.     
T Consensus       154 -------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (366)
T 3k26_A          154 -------------------FGGVEGHRDEVLSADYDLLGEKIMSCG-MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP  213 (366)
T ss_dssp             -------------------ECSTTSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSC
T ss_pred             -------------------ecccccccCceeEEEECCCCCEEEEec-CCCCEEEEECCCCccccccceeEEecCCCCccc
Confidence                               001246888999999999999888754 799999999998765432110     00     


Q ss_pred             -------ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCC------------CceEeeeeceeceeEE
Q 010390          264 -------AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDK------------GPIQHFSGCRIESFYV  324 (512)
Q Consensus       264 -------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~  324 (512)
                             .........|...|.+++|+  +.+|++++.||.|++||+.....            ..+..+..+  ...+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~  289 (366)
T 3k26_A          214 FISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIW  289 (366)
T ss_dssp             CCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSS
T ss_pred             ccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEE
Confidence                   00001223378889999998  77999999999999999876543            123333333  23466


Q ss_pred             EEEECCC--CCEEEEecCCCCEEEEecCCCCCC---Cceeccc--cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          325 KSEICPN--ASHILSGSSDGNAYVWQVNKPQAD---PIKLKSH--DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       325 ~~~~s~~--~~~l~~g~~dg~i~iw~~~~~~~~---~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      +++|+|+  +++|++|+.||.|++||+.+++..   ...+.+|  ...|++++|+|++ .+|++++.||.|++||+.+
T Consensus       290 ~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          290 YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS-SILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEEC--
T ss_pred             EEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC-CeEEEEeCCCEEEEEEecC
Confidence            7888898  999999999999999999887542   2256677  7899999999999 8999999999999999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.9e-40  Score=313.26  Aligned_cols=303  Identities=13%  Similarity=0.126  Sum_probs=225.1

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA  126 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~  126 (512)
                      +.|.++|.+++|   +|++++||+|+.||.|+|||+.++..           ..+..+.+|.+.|++++|+|++++|+++
T Consensus         8 ~~~~~~v~~~~~---s~~g~~l~~~~~d~~i~iw~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~~~~~l~s~   73 (377)
T 3dwl_C            8 HILPKPSYEHAF---NSQRTEFVTTTATNQVELYEQDGNGW-----------KHARTFSDHDKIVTCVDWAPKSNRIVTC   73 (377)
T ss_dssp             EECSSCCSCCEE---CSSSSEEECCCSSSCBCEEEEETTEE-----------EECCCBCCCSSCEEEEEECTTTCCEEEE
T ss_pred             ecCCCcEEEEEE---CCCCCEEEEecCCCEEEEEEccCCce-----------EEEEEEecCCceEEEEEEeCCCCEEEEE
Confidence            346789999999   99999999999999999999976521           3367788999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCe---eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          127 SGDQTIKIWDAEKKK---CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       127 ~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      +.|++|++||+.+++   ....+.+|...|.+++|+|++ .+|++++.|+.|++||++.++...                
T Consensus        74 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~----------------  136 (377)
T 3dwl_C           74 SQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWW----------------  136 (377)
T ss_dssp             ETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CC----------------
T ss_pred             eCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccce----------------
Confidence            999999999999887   667778899999999999987 899999999999999998764211                


Q ss_pred             cccccccccceeccc-ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC-------Ccccccccccccc
Q 010390          204 AHLLSQSKRVSRRKA-ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP-------HAESSSAKETRLH  275 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~  275 (512)
                              ....+.. |...|.+++|+|++..+++ ++.|+.|++||++...........       .......+ .|..
T Consensus       137 --------~~~~~~~~h~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  206 (377)
T 3dwl_C          137 --------VSKHLKRPLRSTILSLDWHPNNVLLAA-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG  206 (377)
T ss_dssp             --------CCEEECSSCCSCEEEEEECTTSSEEEE-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS
T ss_pred             --------eeeEeecccCCCeEEEEEcCCCCEEEE-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc
Confidence                    0112334 7889999999999998887 458999999999743321110000       00011123 7788


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc--eEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP--IQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      .|.+++|+|++++|++++.||.|++||+.......  +..+..+  ...+.+++|+|++++|++|+.++.+ +|+.....
T Consensus       207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~  283 (377)
T 3dwl_C          207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESG  283 (377)
T ss_dssp             SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCCC--
T ss_pred             eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCc
Confidence            89999999999999999999999999998754422  3444444  3458889999999999999876655 77665211


Q ss_pred             -CCC--------------------------------------------------ceeccccCCeEEEEeCCCCCC---eE
Q 010390          354 -ADP--------------------------------------------------IKLKSHDGEVTAVNWCPNEAG---KI  379 (512)
Q Consensus       354 -~~~--------------------------------------------------~~~~~h~~~v~~v~~~~~~~~---~l  379 (512)
                       ...                                                  .....|...|+++++.+....   .|
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~  363 (377)
T 3dwl_C          284 WAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAF  363 (377)
T ss_dssp             -CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEE
T ss_pred             eEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEE
Confidence             000                                                  011239999999998765434   69


Q ss_pred             EEEeCCCcEEEEeC
Q 010390          380 VTSSDDYTVRLWSL  393 (512)
Q Consensus       380 ~s~~~dg~i~vwd~  393 (512)
                      +|||.||.|++||+
T Consensus       364 ~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          364 TSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEETTSEEEEECC
T ss_pred             EeecCCCcEEEecC
Confidence            99999999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.9e-39  Score=304.89  Aligned_cols=288  Identities=13%  Similarity=0.184  Sum_probs=204.2

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----  128 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----  128 (512)
                      -.++..   .+++.++.+ ..+.....|++...                 ....|+..|++++|+|||++|++|+.    
T Consensus         8 ~sg~d~---g~~~~~~~~-~g~~~~~~w~~p~~-----------------~p~~H~~~V~~v~fSpDG~~las~s~d~~~   66 (357)
T 4g56_B            8 SSGVDL---GTENLYFQS-NGSSKGSAWGRPVT-----------------APACMEVQIGAVRYRRDGALLLAASSLSSR   66 (357)
T ss_dssp             -----------------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSS
T ss_pred             ccCCCC---CccceEEec-CCCccccccCCCCC-----------------CcccccCCEEEEEECCCCCEEEEEcCCCCc
Confidence            344555   555555444 44677899987432                 23579999999999999999999997    


Q ss_pred             --CCcEEEEeCCCCeeeecc----cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          129 --DQTIKIWDAEKKKCTGAL----MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       129 --dg~i~iwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                        |+.|++|+..++.....+    .+|...|.+++|+|++  .+++++.||+|++||+.+++.....             
T Consensus        67 ~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~~-------------  131 (357)
T 4g56_B           67 TWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK--GILVASDSGAVELWEILEKESLLVN-------------  131 (357)
T ss_dssp             SCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT--EEEEEETTSCEEEC--------CCC-------------
T ss_pred             cccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC--CEEEEECCCEEEEeeccccceeEEE-------------
Confidence              788999998877654333    4688899999999976  4667888999999999876543321             


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ  282 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (512)
                                .....+|...|.+++|+|+++.+++ |+.|+.|++||+++++...           .+..|...|.+++|
T Consensus       132 ----------~~~~~~h~~~V~~v~~spdg~~l~s-gs~dg~v~iwd~~~~~~~~-----------~~~~h~~~v~~v~~  189 (357)
T 4g56_B          132 ----------KFAKYEHDDIVKTLSVFSDGTQAVS-GGKDFSVKVWDLSQKAVLK-----------SYNAHSSEVNCVAA  189 (357)
T ss_dssp             ----------CEEECCCSSCEEEEEECSSSSEEEE-EETTSCEEEEETTTTEEEE-----------EECCCSSCEEEEEE
T ss_pred             ----------eeccCCCCCCEEEEEECCCCCEEEE-EeCCCeEEEEECCCCcEEE-----------EEcCCCCCEEEEEE
Confidence                      1133468889999999999999887 5589999999999887665           46678889999999


Q ss_pred             CCCCC-EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390          283 DSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLK  360 (512)
Q Consensus       283 ~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~  360 (512)
                      ++++. ++++++.||.|++||++..+..  ..+........+.+++|+|+ +.+|++|+.|+.|++||+.+++. ...+.
T Consensus       190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~-~~~~~  266 (357)
T 4g56_B          190 CPGKDTIFLSCGEDGRILLWDTRKPKPA--TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS-AQTSA  266 (357)
T ss_dssp             CTTCSSCEEEEETTSCEEECCTTSSSCB--CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG-CEEEC
T ss_pred             ccCCCceeeeeccCCceEEEECCCCcee--eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE-eEEEe
Confidence            99875 7889999999999999765432  33333333456788999998 56889999999999999998776 57889


Q ss_pred             cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       361 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      +|...|++++|+|++..+|++|+.|++|+|||+++++++..
T Consensus       267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence            99999999999999867899999999999999999876654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-39  Score=310.34  Aligned_cols=325  Identities=11%  Similarity=0.117  Sum_probs=246.2

Q ss_pred             eecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEEC----CCCCCccccccccccccceecc------ccCCCcEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDS----RRKLPSFACHRENAEKARISDW------VAHQNAIF  112 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~------~~h~~~V~  112 (512)
                      .....|.++|.+++|   +|+++ +||+|+.||.|+|||+    .++.......   ........+      .+|.+.|+
T Consensus        39 ~~~~~~~~~v~~~~~---s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~  112 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTW---NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLT---IIAELRHPFALSASSGKTTNQVT  112 (425)
T ss_dssp             CEEEEECSCCSEEEE---CSSCTTEEEEEETBTEEEEEEEEEC------CEEEE---EEEEEECCCCCC------CBCEE
T ss_pred             eeeeeccCceEEEEE---CCCCCcEEEEecCCceEEEEEEecccCCcccccccc---ccccccccccccccccCCCCceE
Confidence            344557799999999   99999 9999999999999999    6654200000   000011111      23788999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccc
Q 010390          113 DLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAE  192 (512)
Q Consensus       113 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  192 (512)
                      +++|+|++++|++|+.||.|++|| .+++.+..+..|...|.+++|+|++ .+|++++.||.|++||+.+++........
T Consensus       113 ~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  190 (425)
T 1r5m_A          113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELK  190 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeecc
Confidence            999999999999999999999999 6788888899999999999999988 89999999999999999876543322111


Q ss_pred             ce----------------eeecccccccc-------------cccccccceecccccccEEEEEEeecCCEEEEEeecCC
Q 010390          193 SF----------------VFSSAVVKGAH-------------LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS  243 (512)
Q Consensus       193 ~~----------------~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg  243 (512)
                      ..                +....+.....             ..........+..|...|.+++|+|++..+++ ++.|+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~  269 (425)
T 1r5m_A          191 ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS-ASDDG  269 (425)
T ss_dssp             ---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE-EETTS
T ss_pred             ccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE-EcCCC
Confidence            10                11111111110             01112333455678899999999999998887 45899


Q ss_pred             eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeE
Q 010390          244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFY  323 (512)
Q Consensus       244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  323 (512)
                      .|++||+++.+...           ....|...|.+++|+|++ ++++++.|+.|++||+...  ..+..+..+  ...+
T Consensus       270 ~i~i~d~~~~~~~~-----------~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~--~~~~~~~~~--~~~i  333 (425)
T 1r5m_A          270 TLRIWHGGNGNSQN-----------CFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN--TLLALSIVD--GVPI  333 (425)
T ss_dssp             CEEEECSSSBSCSE-----------EECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT--EEEEEEECT--TCCE
T ss_pred             EEEEEECCCCccce-----------EecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC--cEeEecccC--CccE
Confidence            99999999876554           345677889999999999 9999999999999998653  234444433  3468


Q ss_pred             EEEEECCCCCEEEEecCCCCEEEEecCCCC-------------------CCCceeccccC--CeEEEEeCCCCCCeEEEE
Q 010390          324 VKSEICPNASHILSGSSDGNAYVWQVNKPQ-------------------ADPIKLKSHDG--EVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       324 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~-------------------~~~~~~~~h~~--~v~~v~~~~~~~~~l~s~  382 (512)
                      .+++|+|++++|++++.||.|++||+.+..                   .....+.+|..  .|++++|+|++ .+|+++
T Consensus       334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~  412 (425)
T 1r5m_A          334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKISVA  412 (425)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-ceEEEE
Confidence            889999999999999999999999998765                   02466778866  99999999999 899999


Q ss_pred             eCCCcEEEEeCC
Q 010390          383 SDDYTVRLWSLE  394 (512)
Q Consensus       383 ~~dg~i~vwd~~  394 (512)
                      +.||.|++||++
T Consensus       413 ~~dg~i~iw~~~  424 (425)
T 1r5m_A          413 YSLQEGSVVAIP  424 (425)
T ss_dssp             ESSSCCEEEECC
T ss_pred             ecCceEEEEeec
Confidence            999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.4e-38  Score=297.45  Aligned_cols=260  Identities=17%  Similarity=0.276  Sum_probs=218.9

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      .....+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++ .+|++|+.|+.|++|
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw  124 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIY  124 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEE
Confidence            3466789999999999999999999999999999999999999999999999999999999988 899999999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      |+.+.....                       .....+.+|...|.++.|++++. +++ ++.|+.|++||+++++... 
T Consensus       125 ~~~~~~~~~-----------------------~~~~~~~~h~~~v~~~~~~~~~~-l~s-~s~d~~i~~wd~~~~~~~~-  178 (340)
T 1got_B          125 NLKTREGNV-----------------------RVSRELAGHTGYLSCCRFLDDNQ-IVT-SSGDTTCALWDIETGQQTT-  178 (340)
T ss_dssp             ETTTCSBSC-----------------------EEEEEEECCSSCEEEEEEEETTE-EEE-EETTSCEEEEETTTTEEEE-
T ss_pred             ECccCCCcc-----------------------eeEEEecCCCccEEEEEECCCCc-EEE-EECCCcEEEEECCCCcEEE-
Confidence            997643211                       11224567888999999998876 444 5589999999999887654 


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  338 (512)
                                .+..|...|.+++|+|++.++++++.|+.|++||++..  .....+.+|  ...+.+++|+|++++|++|
T Consensus       179 ----------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~--~~~~~~~~h--~~~v~~v~~~p~~~~l~s~  244 (340)
T 1got_B          179 ----------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGH--ESDINAICFFPNGNAFATG  244 (340)
T ss_dssp             ----------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--SEEEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred             ----------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--eeEEEEcCC--cCCEEEEEEcCCCCEEEEE
Confidence                      45678889999999999999999999999999999763  344555554  3568889999999999999


Q ss_pred             cCCCCEEEEecCCCCCCCceec--cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          339 SSDGNAYVWQVNKPQADPIKLK--SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      +.||.|++||++..+.. ..+.  .+...|++++|+|++ .+|++|+.||.|++||+.+++.+..
T Consensus       245 s~d~~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~  307 (340)
T 1got_B          245 SDDATCRLFDLRADQEL-MTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             ETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             cCCCcEEEEECCCCcEE-EEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEEcccCcEeeE
Confidence            99999999999876542 2332  233579999999999 8999999999999999988776543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-38  Score=306.85  Aligned_cols=296  Identities=14%  Similarity=0.184  Sum_probs=236.7

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      ..+.+++|   +|+|++|++|+.||.|++||+.+...             ...+..| ..+....|++++++|++|+.||
T Consensus        57 ~~~~~~~~---s~~g~~l~~~~~d~~v~i~d~~~~~~-------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg  119 (420)
T 3vl1_A           57 DAGKGNTF---EKVGSHLYKARLDGHDFLFNTIIRDG-------------SKMLKRA-DYTAVDTAKLQMRRFILGTTEG  119 (420)
T ss_dssp             BCCTTCEE---EEEETTEEEEEETTEEEEEECCSEET-------------TTTSCSC-CEEEEEEECSSSCEEEEEETTS
T ss_pred             ccccceee---eecCCeEEEEEcCCcEEEEEecccce-------------eeEEecC-CceEEEEEecCCCEEEEEECCC
Confidence            33457777   99999999999999999999876532             3334455 4555567899999999999999


Q ss_pred             cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390          131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS  210 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (512)
                      .|++||+.+++....+.+|...|++++|+|++ .+|++++.|+.|++||+++++...                       
T Consensus       120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~-----------------------  175 (420)
T 3vl1_A          120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPR-----------------------  175 (420)
T ss_dssp             CEEEECTTSCEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCE-----------------------
T ss_pred             CEEEEeCCCcceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCce-----------------------
Confidence            99999999999999889999999999999988 899999999999999998765432                       


Q ss_pred             ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc--c-----------cccccccccCe
Q 010390          211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE--S-----------SSAKETRLHGI  277 (512)
Q Consensus       211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~i  277 (512)
                          .+..|...|.+++|+|++..+++ ++.|+.|++||+++++...........  .           ......+...+
T Consensus       176 ----~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          176 ----TLIGHRATVTDIAIIDRGRNVLS-ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             ----EEECCSSCEEEEEEETTTTEEEE-EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             ----EEcCCCCcEEEEEEcCCCCEEEE-EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence                44578889999999999998887 558999999999988766544321100  0           00112234667


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCCCCC
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                      .+++|+|++++|++++.||.|++||++...  ....+.. .....+.+++|+|+++ +|++|+.||.|++||+.+++...
T Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~  327 (420)
T 3vl1_A          251 NNLEFGTYGKYVIAGHVSGVITVHNVFSKE--QTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPV  327 (420)
T ss_dssp             CTTCSSCTTEEEEEEETTSCEEEEETTTCC--EEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS
T ss_pred             cceEEcCCCCEEEEEcCCCeEEEEECCCCc--eeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCch
Confidence            788889999999999999999999997632  2223222 2245688999999999 99999999999999999887656


Q ss_pred             ceecc-ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          357 IKLKS-HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       357 ~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ..+.+ |...|+++.|. ++ .+|++++.||.|++|++...+
T Consensus       328 ~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~~~~~~  367 (420)
T 3vl1_A          328 GEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDIISDPE  367 (420)
T ss_dssp             EEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEEECCTT
T ss_pred             hhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEeccCCC
Confidence            66666 67788888664 66 799999999999999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=303.68  Aligned_cols=328  Identities=16%  Similarity=0.171  Sum_probs=245.0

Q ss_pred             eeeEeecCCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK  118 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~  118 (512)
                      +.....+.+|.++|.+++|   +| ++++||+|+.||.|+|||+.+.....................+|...|.+++|+|
T Consensus        33 ~~~~~~~~~h~~~v~~~~~---s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  109 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDI---EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP  109 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEE---CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred             CcceeeeeccCCcEEEEEE---ecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence            4445677889999999999   99 9999999999999999999876542211100000001112246999999999999


Q ss_pred             -CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCC--CeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          119 -EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS--DILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       119 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                       ++.+|++++.||.|++||+.+++....+. +...+.++.|++.+.  .++++++.||.|++||+++++...        
T Consensus       110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~--------  180 (408)
T 4a11_B          110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH--------  180 (408)
T ss_dssp             TCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE--------
T ss_pred             CCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee--------
Confidence             78899999999999999999999888776 778899999998642  499999999999999998665432        


Q ss_pred             eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC-----ccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH-----AESSSAK  270 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~  270 (512)
                                         .+..|...|.+++|+|++..++++++.||.|++||+++...........     .......
T Consensus       181 -------------------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (408)
T 4a11_B          181 -------------------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN  241 (408)
T ss_dssp             -------------------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred             -------------------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence                               4456788999999999999766667799999999998776333222111     1111133


Q ss_pred             cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee--ceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG--CRIESFYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                      ..|...|.+++|+|++++|++++.||.|++||+.+...........  ........ ......+..+++++.++.|++||
T Consensus       242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~d  320 (408)
T 4a11_B          242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF-TVSCGCSSEFVFVPYGSTIAVYT  320 (408)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCC-EECCSSSSCEEEEEETTEEEEEE
T ss_pred             ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccccccee-EEecCCCceEEEEecCCEEEEEE
Confidence            6778899999999999999999999999999997754322211110  00011111 22223455666777899999999


Q ss_pred             cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      +.+++. ...+.+|.+.|++++|+|++ .+|++++.||.|++||+.+++.+..
T Consensus       321 ~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          321 VYSGEQ-ITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             TTTCCE-EEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC------
T ss_pred             CcCCcc-eeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCCccCC
Confidence            998776 57788999999999999999 8999999999999999999887654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-38  Score=347.39  Aligned_cols=369  Identities=16%  Similarity=0.230  Sum_probs=281.4

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      ...+.+|.+.|++++|   +|+|++||+|+.||.|+|||+.++..             +..+.+|.+.|.+++|+|++++
T Consensus       608 ~~~~~~h~~~v~~~~~---s~~~~~l~s~~~d~~i~vw~~~~~~~-------------~~~~~~h~~~v~~~~~s~~~~~  671 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACF---SQDGQRIASCGADKTLQVFKAETGEK-------------LLDIKAHEDEVLCCAFSSDDSY  671 (1249)
T ss_dssp             SEEECCCSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTCCE-------------EEEECCCSSCEEEEEECTTSSE
T ss_pred             eEEEecccccEEEEEE---CCCCCEEEEEeCCCeEEEEECCCCCE-------------EEEeccCCCCEEEEEEecCCCE
Confidence            3467899999999999   99999999999999999999987643             6778899999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      |++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++ ..++++|+.|+.|++||++++...               
T Consensus       672 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~---------------  736 (1249)
T 3sfz_A          672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR---------------  736 (1249)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE---------------
T ss_pred             EEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh---------------
Confidence            9999999999999999999999999999999999999953 368999999999999999865422               


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC--------------------
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW--------------------  261 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~--------------------  261 (512)
                                  ..+.+|...|.+++|+|++..+++ ++.||.|++||++++........                    
T Consensus       737 ------------~~~~~h~~~v~~~~~sp~~~~l~s-~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  803 (1249)
T 3sfz_A          737 ------------NTMFGHTNSVNHCRFSPDDELLAS-CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC  803 (1249)
T ss_dssp             ------------EEECCCSSCEEEEEECSSTTEEEE-EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred             ------------heecCCCCCEEEEEEecCCCEEEE-EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence                        245578889999999999998887 45799999999987643222110                    


Q ss_pred             ----------------------------------CCc--------------------------------ccccccccccc
Q 010390          262 ----------------------------------PHA--------------------------------ESSSAKETRLH  275 (512)
Q Consensus       262 ----------------------------------~~~--------------------------------~~~~~~~~~~~  275 (512)
                                                        .+.                                ........|..
T Consensus       804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~  883 (1249)
T 3sfz_A          804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS  883 (1249)
T ss_dssp             CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc
Confidence                                              000                                00012345677


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc---------------------------eEeeee------ceecee
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP---------------------------IQHFSG------CRIESF  322 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---------------------------~~~~~~------~~~~~~  322 (512)
                      .|.+++|+|++.+|++++.||.|++||+.......                           ......      ......
T Consensus       884 ~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  963 (1249)
T 3sfz_A          884 WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ  963 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSC
T ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCc
Confidence            78999999999999999999999999975321100                           000000      011235


Q ss_pred             EEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          323 YVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       323 ~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      +.+++|+|+++++++|+.+|.|++|++.++.. ...+.+|...|++++|+|++ .+|++++.||.|++||+.+++.....
T Consensus       964 i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~-~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~ 1041 (1249)
T 3sfz_A          964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV-FSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYVFLQ 1041 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCCEEEETTTTSC-EEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEECCB
T ss_pred             EEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-eeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceEEEe
Confidence            77899999999999999999999999988765 46778999999999999999 89999999999999999999877543


Q ss_pred             cCccccceeeeeccchhcccccCCCC-------------------cccccCCCCcCCCchhcccCCCCCCCCCCeecCc
Q 010390          403 SPSSVRRRVMAIPSTECRKLFMNGEP-------------------GWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP  462 (512)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  462 (512)
                      .   +...+..+.+.+...++..+.+                   +...+. .++|+||++.++.++... .+..|...
T Consensus      1042 ~---~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~s~s~d~-~v~iwd~~ 1115 (1249)
T 3sfz_A         1042 A---HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL-SCAISSDATKFSSTSADK-TAKIWSFD 1115 (1249)
T ss_dssp             C---CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCC-CEEECSSSSSCEEECCSS-CCCEECSS
T ss_pred             c---CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEE-EEEECCCCCEEEEEcCCC-cEEEEECC
Confidence            2   2233333333333322221111                   112233 678999999888775532 34555554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-40  Score=316.19  Aligned_cols=302  Identities=16%  Similarity=0.222  Sum_probs=241.4

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCEEEE
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTNILT  125 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s  125 (512)
                      .+|...|.+++|   +|++++||+|+.||.|+|||+.....         ....+..+.+|...|++++|+|+ +.+|++
T Consensus        64 ~~~~~~v~~~~~---s~~~~~l~~~~~dg~v~vw~~~~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  131 (416)
T 2pm9_A           64 LQVDSKFNDLDW---SHNNKIIAGALDNGSLELYSTNEANN---------AINSMARFSNHSSSVKTVKFNAKQDNVLAS  131 (416)
T ss_dssp             CCCSSCEEEEEE---CSSSSCEEEEESSSCEEEECCSSTTS---------CCCEEEECCCSSSCCCEEEECSSSTTBEEE
T ss_pred             EecCCceEEEEE---CCCCCeEEEEccCCeEEEeecccccc---------cccchhhccCCccceEEEEEcCCCCCEEEE
Confidence            358888999999   99999999999999999999976321         11247778899999999999998 899999


Q ss_pred             EeCCCcEEEEeCCCCe------eee---cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          126 ASGDQTIKIWDAEKKK------CTG---ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       126 ~~~dg~i~iwd~~~~~------~~~---~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      ++.|+.|++||+.+++      ...   .+..|...|.+++|+|+++.+|++++.||.|++||+++++.......     
T Consensus       132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----  206 (416)
T 2pm9_A          132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY-----  206 (416)
T ss_dssp             ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC-----
T ss_pred             EcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec-----
Confidence            9999999999999886      332   34679999999999999668999999999999999986543221100     


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC---eEEEEeccCccceecccCCCcccccccc-c
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS---IVKFWDTRNLKAQITQAWPHAESSSAKE-T  272 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~  272 (512)
                                      .....+|...+.+++|+|++..++++++.|+   .|++||+++......          ... .
T Consensus       207 ----------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~----------~~~~~  260 (416)
T 2pm9_A          207 ----------------TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ----------TLNQG  260 (416)
T ss_dssp             ----------------CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB----------CCCSC
T ss_pred             ----------------cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE----------EeecC
Confidence                            0011233678999999999865555566788   999999998643322          344 6


Q ss_pred             cccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEecC
Q 010390          273 RLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       273 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~  350 (512)
                      |...|.+++|+| ++.+|++++.||.|++||+.+.  ..+..+..+.  ..+.+++|+|++ .+|++++.|+.|++|++.
T Consensus       261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~--~~~~~~~~~~--~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--EQLSQFPARG--NWCFKTKFAPEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--CEEEEEECSS--SCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred             ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--ccceeecCCC--CceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence            778999999999 9999999999999999998763  4455555543  457789999999 899999999999999998


Q ss_pred             CCCCCCce----------------------------------eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          351 KPQADPIK----------------------------------LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       351 ~~~~~~~~----------------------------------~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      +.......                                  ...|...+++++|+|+| ++|++++.|+.|+||++.+.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          337 NLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG-KLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT-EEECBCTTSSCBCCBCCCCC
T ss_pred             CCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC-eEEEEeCCCCeEEEEEeccC
Confidence            76532211                                  11166788899999999 89999999999999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-39  Score=307.31  Aligned_cols=298  Identities=10%  Similarity=0.052  Sum_probs=220.9

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCC-------cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDG-------YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      -||++|+|   +|||++||+|+.+.       .|+||+++........   .........+.+|...|.+++++  +..+
T Consensus        15 ~PV~sv~f---s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~---~~~~~~~~~l~~~~~~v~s~~~~--~~~~   86 (365)
T 4h5i_A           15 YPAYGAKF---LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE---QFHILSEFALEDNDDSPTAIDAS--KGII   86 (365)
T ss_dssp             SCEEEEEE---EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH---HEEEEEEEECCTTSCCCCEEEEE--TTEE
T ss_pred             CCEEEEEE---eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee---eeeeeeEEEccCCCCceEEEEeC--CCEE
Confidence            48999999   99999999997543       5999998765431110   00111223567888999888775  5566


Q ss_pred             EEEe-----------CCCcEEEEeCCCCeee----e-----cccCcCCCEEEEEeeCCCCCeEE--EEeCCCcEEEEeCC
Q 010390          124 LTAS-----------GDQTIKIWDAEKKKCT----G-----ALMGHTGSIKSLCSHPTNSDILV--SGSRDGSFAIWDLR  181 (512)
Q Consensus       124 ~s~~-----------~dg~i~iwd~~~~~~~----~-----~~~~h~~~v~~l~~~~~~~~~l~--s~~~dg~i~vwd~~  181 (512)
                      ++|.           .|+.+++|++......    .     ....+...+.+++|+|++ ++++  +++.|++|++||+.
T Consensus        87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~  165 (365)
T 4h5i_A           87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPS  165 (365)
T ss_dssp             EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETT
T ss_pred             EEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECC
Confidence            6653           4778999997654321    1     112345568999999998 6655  44578999999998


Q ss_pred             CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390          182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~  261 (512)
                      +++...                           . ..|...|.+++|+|+++.+++++  ++.+.+|+..++......  
T Consensus       166 ~~~~~~---------------------------~-~~~~~~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~~~~~~~--  213 (365)
T 4h5i_A          166 DLTEKF---------------------------E-IETRGEVKDLHFSTDGKVVAYIT--GSSLEVISTVTGSCIARK--  213 (365)
T ss_dssp             TTEEEE---------------------------E-EECSSCCCEEEECTTSSEEEEEC--SSCEEEEETTTCCEEEEE--
T ss_pred             CCcEEE---------------------------E-eCCCCceEEEEEccCCceEEecc--ceeEEEEEeccCcceeee--
Confidence            654321                           1 13667899999999999988754  566777777766654432  


Q ss_pred             CCccccccccccccCeeEEEeCCCCCEEEEEecCC----eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390          262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH----RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  337 (512)
                             ....|...|.+++|+|++.++++++.|+    .+++|++...................+.+++|+|+|++||+
T Consensus       214 -------~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las  286 (365)
T 4h5i_A          214 -------TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL  286 (365)
T ss_dssp             -------CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred             -------ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence                   3455667899999999999999999887    68889886543333222222333456889999999999999


Q ss_pred             ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      |+.|++|+|||+.+++.....+.+|...|++|+|+||+ ++|+|||.|++|+|||+....
T Consensus       287 gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          287 ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS-TYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECCTTT
T ss_pred             EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCC
Confidence            99999999999998876434468999999999999999 899999999999999996543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.4e-38  Score=288.22  Aligned_cols=261  Identities=13%  Similarity=0.205  Sum_probs=208.8

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CCC
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--EDT  121 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~  121 (512)
                      ..+.||.+.|.+++|   +|+|++||+|+.||.|+|||+.+..           ...+..+.+|.+.|++++|++  +++
T Consensus         3 ~~~~~h~~~V~~~~~---s~~g~~las~s~D~~v~iw~~~~~~-----------~~~~~~l~gH~~~V~~v~~s~~~~g~   68 (297)
T 2pm7_B            3 VIANAHNEMIHDAVM---DYYGKRMATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFGT   68 (297)
T ss_dssp             EECCSCSSCEEEEEE---CTTSSEEEEEETTSCEEEEEBCSSC-----------BCCCEEECCCSSCEEEEEECCGGGCS
T ss_pred             eeccCCcCceEEEEE---CCCCCEEEEEeCCCEEEEEecCCCC-----------cEEEEEEccccCCeEEEEecCCCcCC
Confidence            457899999999999   9999999999999999999986432           133677899999999999986  489


Q ss_pred             EEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          122 NILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      +|++|+.|++|+|||+.+++  .+..+.+|...|.+++|+|+. +.+|++++.|+.|++||++......           
T Consensus        69 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-----------  137 (297)
T 2pm7_B           69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-----------  137 (297)
T ss_dssp             EEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-----------
T ss_pred             EEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-----------
Confidence            99999999999999998874  556678899999999999972 3899999999999999997643211           


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecC-------------CEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE-------------VSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                                    ...+..|...|.+++|+|++             ..+++ |+.|+.|++||+++........     
T Consensus       138 --------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~-----  197 (297)
T 2pm7_B          138 --------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLE-----  197 (297)
T ss_dssp             --------------CEEEECCSSCEEEEEECCCC------------CCEEEE-EETTSCEEEEEEETTTTEEEEE-----
T ss_pred             --------------eeeeecccCccceEeecCCcccccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEE-----
Confidence                          11345778899999999973             45555 6689999999998765321110     


Q ss_pred             ccccccccccCeeEEEeCCCC---CEEEEEecCCeEEEEEcccCCCCce-EeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390          266 SSSAKETRLHGISSLSQDSNG---VFLTASCMDHRIYLYNVLQLDKGPI-QHFSGCRIESFYVKSEICPNASHILSGSSD  341 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  341 (512)
                        ..+.+|...|.+++|+|++   .+|++++.|++|++||+........ ..+........+.+++|+|++++|++++.|
T Consensus       198 --~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D  275 (297)
T 2pm7_B          198 --STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD  275 (297)
T ss_dssp             --EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred             --EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence              0466788999999999985   8999999999999999876432222 122112334668899999999999999999


Q ss_pred             CCEEEEecCC
Q 010390          342 GNAYVWQVNK  351 (512)
Q Consensus       342 g~i~iw~~~~  351 (512)
                      +.|+||+...
T Consensus       276 ~~v~lw~~~~  285 (297)
T 2pm7_B          276 NKVTLWKENL  285 (297)
T ss_dssp             SCEEEEEECT
T ss_pred             CcEEEEEECC
Confidence            9999999763

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=297.65  Aligned_cols=261  Identities=19%  Similarity=0.318  Sum_probs=212.4

Q ss_pred             cceeccccCCC-cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee---cccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390           99 ARISDWVAHQN-AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG---ALMGHTGSIKSLCSHPTNSDILVSGSRDGS  174 (512)
Q Consensus        99 ~~~~~~~~h~~-~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  174 (512)
                      ..+.++.+|.+ .|++++|+|++++|++|+.|++|+|||+.+++...   ...+|...|.+++|+|++ .+|++|+.|+.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDAT   84 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCc
Confidence            44677889988 99999999999999999999999999998876432   236899999999999988 89999999999


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      |++||+.....                         .....+.+|...|.+++|+|+++.+++ |+.|+.|++||+++..
T Consensus        85 v~iw~~~~~~~-------------------------~~~~~~~~h~~~v~~v~~sp~~~~l~s-~s~D~~v~iwd~~~~~  138 (345)
T 3fm0_A           85 TCIWKKNQDDF-------------------------ECVTTLEGHENEVKSVAWAPSGNLLAT-CSRDKSVWVWEVDEED  138 (345)
T ss_dssp             EEEEEECCC-E-------------------------EEEEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEEECTTS
T ss_pred             EEEEEccCCCe-------------------------EEEEEccCCCCCceEEEEeCCCCEEEE-EECCCeEEEEECCCCC
Confidence            99999875421                         122355688999999999999998887 4589999999998764


Q ss_pred             ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE
Q 010390          255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH  334 (512)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  334 (512)
                      .....        .....|...|.+++|+|++.+|++++.|+.|++||+..........+.+|  ...+.+++|+|++++
T Consensus       139 ~~~~~--------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~  208 (345)
T 3fm0_A          139 EYECV--------SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQR  208 (345)
T ss_dssp             CEEEE--------EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSE
T ss_pred             CeEEE--------EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCE
Confidence            32211        03567788899999999999999999999999999876433334455554  456889999999999


Q ss_pred             EEEecCCCCEEEEecCCCCCC--------------Cceecc-ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          335 ILSGSSDGNAYVWQVNKPQAD--------------PIKLKS-HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       335 l~~g~~dg~i~iw~~~~~~~~--------------~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      |++|+.|++|++|+.......              ...+.+ |...|.+++|+|++ ..|++++.|+.|++|+...+.
T Consensus       209 l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          209 LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             EEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEETTSCEEEEEECTTS
T ss_pred             EEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEeCCCeEEEEEeCCCC
Confidence            999999999999997543211              112233 88899999999999 899999999999999988764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.8e-37  Score=298.94  Aligned_cols=289  Identities=18%  Similarity=0.293  Sum_probs=233.8

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI  132 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i  132 (512)
                      .+.|+|   |++ ++||+|. |++|+|||..++..           ..+..+.+|...|++|+|+|+|++|++|+.||+|
T Consensus       108 ~~~l~w---S~~-n~lAvgl-d~tV~lWd~~tg~~-----------~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v  171 (420)
T 4gga_A          108 LNLVDW---SSG-NVLAVAL-DNSVYLWSASSGDI-----------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV  171 (420)
T ss_dssp             CBCEEE---CTT-SEEEEEE-TTEEEEEETTTCCE-----------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ceeEEE---CCC-CEEEEEe-CCEEEEEECCCCCE-----------EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeE
Confidence            455777   865 5888886 89999999988753           2244566888999999999999999999999999


Q ss_pred             EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccc
Q 010390          133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKR  212 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (512)
                      +|||+.+++++..+.+|...+.++++++   .+|++|+.|+.+++||......                          .
T Consensus       172 ~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~--------------------------~  222 (420)
T 4gga_A          172 QLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH--------------------------H  222 (420)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC--------------------------E
T ss_pred             EEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccce--------------------------e
Confidence            9999999999999999999999998864   7899999999999999875432                          2


Q ss_pred             ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEE
Q 010390          213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTA  291 (512)
Q Consensus       213 ~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~  291 (512)
                      ...+..|...+..+.+++++..+++++ .|+.+++||..+++......       .....+...|.+++|+|++. ++++
T Consensus       223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~-~D~~v~i~~~~~~~~~~~~~-------~~~~~~~~~V~~~~~~p~~~~~la~  294 (420)
T 4gga_A          223 VATLSGHSQEVCGLRWAPDGRHLASGG-NDNLVNVWPSAPGEGGWVPL-------QTFTQHQGAVKAVAWCPWQSNVLAT  294 (420)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEESSCCSSCSCCS-------EEECCCSSCEEEEEECTTCTTEEEE
T ss_pred             eEEecccccceeeeeecCCCCeeeeee-ccccceEEeeccccccceee-------eeecccCCceeeeeeCCCcccEEEE
Confidence            234567888999999999999988754 89999999998765432111       13566778899999999664 5554


Q ss_pred             --EecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec--CCCCEEEEecCCCCCCCceeccccCCeE
Q 010390          292 --SCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS--SDGNAYVWQVNKPQADPIKLKSHDGEVT  367 (512)
Q Consensus       292 --~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~h~~~v~  367 (512)
                        |+.|+.|++||+.+..  ....+..   ...+.++.|+++++.+++++  .|+.|+|||+.+++. +..+.+|.+.|+
T Consensus       295 ~~gs~D~~I~iwd~~t~~--~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~-v~~l~gH~~~V~  368 (420)
T 4gga_A          295 GGGTSDRHIRIWNVCSGA--CLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-VAELKGHTSRVL  368 (420)
T ss_dssp             EECTTTCEEEEEETTTTE--EEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-EEEECCCSSCEE
T ss_pred             EeecCCCEEEEEeCCccc--cceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE-EEEEcCCCCCEE
Confidence              3579999999987642  3333332   24577889999999887654  789999999998876 578899999999


Q ss_pred             EEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          368 AVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      +++|+|++ .+|+||+.|++|+|||+......+.
T Consensus       369 ~l~~spdg-~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          369 SLTMSPDG-ATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             EEEECTTS-SCEEEEETTTEEEEECCSCSSCC--
T ss_pred             EEEEcCCC-CEEEEEecCCeEEEEECCCCCccch
Confidence            99999999 8999999999999999987665443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5e-39  Score=305.20  Aligned_cols=309  Identities=15%  Similarity=0.165  Sum_probs=239.3

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      ....+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++ .+|++|+.|+.+++||
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~  136 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFN  136 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEE
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEE
Confidence            367789999999999999999999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~  259 (512)
                      +........                    .......+.+|...+.++.|.|++...+++|+.|+.|++||+++++.....
T Consensus       137 ~~~~~~~~~--------------------~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~  196 (380)
T 3iz6_a          137 LSSQADRDG--------------------NMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF  196 (380)
T ss_dssp             CCCCSSCCC--------------------SSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE
T ss_pred             CCCCccccC--------------------CccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe
Confidence            975432110                    011122456888999999999986654555778999999999988765433


Q ss_pred             cCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  338 (512)
                      ...      ...+|...|.++.+++ ++.+|++|+.|+.|++||++.. ...+..+.+|.  ..+.+++|+|++++|++|
T Consensus       197 ~~~------~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~  267 (380)
T 3iz6_a          197 GSE------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-SRAVRTYHGHE--GDINSVKFFPDGQRFGTG  267 (380)
T ss_dssp             CCC------SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-CCCCEEECCCS--SCCCEEEECTTSSEEEEE
T ss_pred             ecc------cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-CcceEEECCcC--CCeEEEEEecCCCeEEEE
Confidence            111      1256778899999987 8899999999999999998643 23455555553  457889999999999999


Q ss_pred             cCCCCEEEEecCCCCCCCceeccc-------cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCcccccee
Q 010390          339 SSDGNAYVWQVNKPQADPIKLKSH-------DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRV  411 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  411 (512)
                      +.||+|++||+.++... ..+..+       ...|++++|+|++ .+|++|+.||.|++||+..++....+..       
T Consensus       268 s~D~~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------  338 (380)
T 3iz6_a          268 SDDGTCRLFDMRTGHQL-QVYNREPDRNDNELPIVTSVAFSISG-RLLFAGYSNGDCYVWDTLLAEMVLNLGT-------  338 (380)
T ss_dssp             CSSSCEEEEETTTTEEE-EEECCCCSSSCCSSCSCSEEEECSSS-SEEEEECTTSCEEEEETTTCCEEEEECC-------
T ss_pred             cCCCeEEEEECCCCcEE-EEecccccccccccCceEEEEECCCC-CEEEEEECCCCEEEEECCCCceEEEEec-------
Confidence            99999999999987652 333332       2358999999999 8999999999999999988876543211       


Q ss_pred             eeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCc
Q 010390          412 MAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP  462 (512)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  462 (512)
                                   ....+...+. .++|+||+.+++.++... .+.+|...
T Consensus       339 -------------~~~~h~~~v~-~l~~s~dg~~l~sgs~D~-~i~iW~~~  374 (380)
T 3iz6_a          339 -------------LQNSHEGRIS-CLGLSSDGSALCTGSWDK-NLKIWAFS  374 (380)
T ss_dssp             -------------SCSSCCCCCC-EEEECSSSSEEEEECTTS-CEEEEECC
T ss_pred             -------------ccCCCCCceE-EEEECCCCCEEEEeeCCC-CEEEEecC
Confidence                         0011122223 678888888887775543 34455543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-37  Score=286.67  Aligned_cols=290  Identities=20%  Similarity=0.262  Sum_probs=239.3

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .+...+.||.++|.+++|    |++++||+|+.||.|++||+.+..             ....+..|...|.+++|+|++
T Consensus         9 ~~~~~l~~h~~~v~~~~~----~~~~~l~s~~~dg~v~vw~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~   71 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA----VDDSKVASVSRDGTVRLWSKDDQW-------------LGTVVYTGQGFLNSVCYDSEK   71 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE----EETTEEEEEETTSEEEEEEESSSE-------------EEEEEEECSSCEEEEEEETTT
T ss_pred             HHHHHhhCCCCCcEEEEe----cCCCEEEEEEcCCcEEEEECCCCE-------------EEEEeecCCccEEEEEECCCC
Confidence            566788999999999987    578899999999999999997653             356677899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          121 TNILTASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      ++|++++.||.|++|++...   +.+..+.+|...|.+++|.  + .++++++.||.|++||..                
T Consensus        72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d~~----------------  132 (313)
T 3odt_A           72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWKEG----------------  132 (313)
T ss_dssp             TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETT----------------
T ss_pred             CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEcCC----------------
Confidence            99999999999999998754   5677788999999999994  4 799999999999999921                


Q ss_pred             cccccccccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                   ........|...+.++.|.+ ++..+++ ++.||.|++||.......            ....+...
T Consensus       133 -------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~------------~~~~~~~~  186 (313)
T 3odt_A          133 -------------SLVYNLQAHNASVWDAKVVSFSENKFLT-ASADKTIKLWQNDKVIKT------------FSGIHNDV  186 (313)
T ss_dssp             -------------EEEEEEECCSSCEEEEEEEETTTTEEEE-EETTSCEEEEETTEEEEE------------ECSSCSSC
T ss_pred             -------------cEEEecccCCCceeEEEEccCCCCEEEE-EECCCCEEEEecCceEEE------------EeccCccc
Confidence                         11224456788999999999 7777766 558999999994432221            12226678


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                      +.+++|+|++. +++++.||.|++||++..  ..+..+..+  ...+.+++|+|++ .|++++.||.|++||+.+++. .
T Consensus       187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~--~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~-~  259 (313)
T 3odt_A          187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTG--DVLRTYEGH--ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL-K  259 (313)
T ss_dssp             EEEEEEEETTE-EEEEETTSEEEEEETTTC--CEEEEEECC--SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE-E
T ss_pred             EEEEEEcCCCe-EEEccCCCeEEEEECCch--hhhhhhhcC--CceEEEEEEecCC-CEEEEecCCEEEEEECCCCce-e
Confidence            99999999998 999999999999999763  345555544  3568899999999 588999999999999998876 4


Q ss_pred             ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ..+..|...|++++|+|++ . +++++.||.|++||+.+++....
T Consensus       260 ~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          260 QVITLPAISIWSVDCMSNG-D-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             EEEECSSSCEEEEEECTTS-C-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             EEEeccCceEEEEEEccCC-C-EEEEeCCCcEEEEeCCCCceeeh
Confidence            6778899999999999998 5 77899999999999999887664

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.7e-38  Score=295.66  Aligned_cols=289  Identities=16%  Similarity=0.243  Sum_probs=238.0

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      |.++|.+++|   +|||++++++..++.+.+|+....             .......+|.+.|++++|+|++++|++++ 
T Consensus         8 ~~~~v~~~~~---s~dg~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-   70 (337)
T 1gxr_A            8 GSKPAYSFHV---TADGQMQPVPFPPDALIGPGIPRH-------------ARQINTLNHGEVVCAVTISNPTRHVYTGG-   70 (337)
T ss_dssp             EEEECCEEEE---CSSSCEEECCCCTTSSSSTTCCSE-------------EEEEEEECCSSCCCEEEECSSSSEEEEEC-
T ss_pred             cCCceeEEEE---CCCCCEEEeecCCCcEeccccCCc-------------cccceeccCCCceEEEEEecCCcEEEEcC-
Confidence            5678899999   999999999988887766654322             12333457999999999999999999998 


Q ss_pred             CCcEEEEeCCCCeeeeccc-----CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          129 DQTIKIWDAEKKKCTGALM-----GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      ||.|++||+.+++....+.     .|...|.+++|+|++ ++|++++.||.|++||+++++..                 
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~-----------------  132 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPR-----------------  132 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--E-----------------
T ss_pred             CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcc-----------------
Confidence            9999999998876443332     688999999999987 89999999999999999865421                 


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                              .......|...+.+++|+|++..++++ +.||.|++||+++++...           ....|...+.+++|+
T Consensus       133 --------~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~-----------~~~~~~~~i~~~~~~  192 (337)
T 1gxr_A          133 --------IKAELTSSAPACYALAISPDSKVCFSC-CSDGNIAVWDLHNQTLVR-----------QFQGHTDGASCIDIS  192 (337)
T ss_dssp             --------EEEEEECSSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEE-----------EECCCSSCEEEEEEC
T ss_pred             --------eeeecccCCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceee-----------eeecccCceEEEEEC
Confidence                    122445677889999999999988874 489999999999876554           345677889999999


Q ss_pred             CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc
Q 010390          284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD  363 (512)
Q Consensus       284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~  363 (512)
                      |++.+|++++.||.|++||++...  ....+   .....+.+++|+|++++|++++.++.|++||+.+.+.  ..+..|.
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~  265 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLREGR--QLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLHLHE  265 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTE--EEEEE---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--EEECCCS
T ss_pred             CCCCEEEEEecCCcEEEEECCCCc--eEeee---cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe--EEEcCCc
Confidence            999999999999999999987642  22222   2345678899999999999999999999999988754  4678899


Q ss_pred             CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      ..|.+++|+|++ .+|++++.||.|++||+.+++.+.
T Consensus       266 ~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          266 SCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             SCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cceeEEEECCCC-CEEEEecCCCcEEEEECCCCeEEE
Confidence            999999999999 899999999999999999887653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-38  Score=309.28  Aligned_cols=298  Identities=11%  Similarity=0.145  Sum_probs=230.5

Q ss_pred             eeeeeeEeec-CCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCC---CCCccccccccccccceeccccCCCcE
Q 010390           37 TEIGAVTVEH-HGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRR---KLPSFACHRENAEKARISDWVAHQNAI  111 (512)
Q Consensus        37 ~~~~~~~~~~-~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V  111 (512)
                      ...+.+...+ .+|.++|.+|+|   +| ++++||+|+.||.|+|||+.+   +..          ......+ +|...|
T Consensus        49 ~~~g~~~~~~~~~h~~~V~~~~~---s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----------~~~~~~~-~h~~~v  114 (437)
T 3gre_A           49 NLRGKLIATLMENEPNSITSSAV---SPGETPYLITGSDQGVIKIWNLKEIIVGEV----------YSSSLTY-DCSSTV  114 (437)
T ss_dssp             GCCCCEEEEECTTTTSCEEEEEE---ECSSSCEEEEEETTSEEEEEEHHHHHTTCC----------CSCSEEE-ECSSCE
T ss_pred             cccceEEeeeccCCCCceEEEEE---CCCCCCEEEEecCCceEEEeECcccccCcc----------cceeeec-cCCCCE
Confidence            3446667777 899999999999   99 999999999999999999875   211          0112222 599999


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEeCC---CCeeeecccC------------cCCCEEEEE--eeCCCCCeEEEEeCCCc
Q 010390          112 FDLCWIKEDTNILTASGDQTIKIWDAE---KKKCTGALMG------------HTGSIKSLC--SHPTNSDILVSGSRDGS  174 (512)
Q Consensus       112 ~~l~~s~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~------------h~~~v~~l~--~~~~~~~~l~s~~~dg~  174 (512)
                      ++++|+|++++|++|+.||.|++||+.   +++....+..            +...+.++.  +++++ .+|++++.||.
T Consensus       115 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~  193 (437)
T 3gre_A          115 TQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSR  193 (437)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSE
T ss_pred             EEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCe
Confidence            999999999999999999999999995   5544433322            445666666  44666 89999999999


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceeccc--ccccEEEEEEeecCCEEEEEeecCCeEEEEeccC
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA--ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN  252 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~  252 (512)
                      |++||+++++...                           .+..  |...|.+++|+|++..+++ |+.||.|++||+++
T Consensus       194 i~iwd~~~~~~~~---------------------------~~~~~~h~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~  245 (437)
T 3gre_A          194 VIIFDIRTLERLQ---------------------------IIENSPRHGAVSSICIDEECCVLIL-GTTRGIIDIWDIRF  245 (437)
T ss_dssp             EEEEETTTCCEEE---------------------------EEECCGGGCCEEEEEECTTSCEEEE-EETTSCEEEEETTT
T ss_pred             EEEEeCCCCeeeE---------------------------EEccCCCCCceEEEEECCCCCEEEE-EcCCCeEEEEEcCC
Confidence            9999998754322                           2333  7789999999999998887 55899999999998


Q ss_pred             ccceecccCCCccccccccccccCeeEEEe----CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec-----------
Q 010390          253 LKAQITQAWPHAESSSAKETRLHGISSLSQ----DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC-----------  317 (512)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------  317 (512)
                      ++.....          ...+...|.+++|    ++++.+|++++.||.|++||+.+..  ....+.++           
T Consensus       246 ~~~~~~~----------~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~  313 (437)
T 3gre_A          246 NVLIRSW----------SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH--CQYAFINSDEQPSMEHFLP  313 (437)
T ss_dssp             TEEEEEE----------BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE--EEEEEESSSSCCCGGGGSC
T ss_pred             ccEEEEE----------ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc--EEEEEEcCCCCCccceecc
Confidence            7765432          1245567999955    4578899999999999999997543  22333322           


Q ss_pred             -------------eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc-----------------------
Q 010390          318 -------------RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS-----------------------  361 (512)
Q Consensus       318 -------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~-----------------------  361 (512)
                                   .....+.+++|+ ++++|++|+.|+.|++||+.+++.. ..+.+                       
T Consensus       314 ~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (437)
T 3gre_A          314 IEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS-KAVISPSRFSDVFIPTQVTANLTMLLRK  391 (437)
T ss_dssp             BCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC-EEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred             cccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc-eEEecccccCceEEEEEeecceEEEEEe
Confidence                         134457788999 7899999999999999999887653 33333                       


Q ss_pred             --------------ccCCeEEEEeCCC--CCCeEEEEeCCCcEEEEe
Q 010390          362 --------------HDGEVTAVNWCPN--EAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       362 --------------h~~~v~~v~~~~~--~~~~l~s~~~dg~i~vwd  392 (512)
                                    |.+.|++++|+++  + .+|++|+.||.|+||+
T Consensus       392 ~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~-~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          392 MKRTSTHSVDDSLYHHDIINSISTCEVDET-PLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CC-------------CCCEEEEEEEESSSS-EEEEEEETTSCEEEEC
T ss_pred             cccccccccCcccccccceeeEeeeccCCc-eEEEEEcCCceEEEeC
Confidence                          8899999999998  5 7999999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.3e-37  Score=302.65  Aligned_cols=328  Identities=16%  Similarity=0.247  Sum_probs=252.8

Q ss_pred             eEeecCCccCCc-ceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           42 VTVEHHGEETPP-LAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        42 ~~~~~~gh~~~v-~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      ....+.||.+.+ .++.+     ++++|++|+.||.|++||+.+++             .+..+.+|.+.|++++|+|++
T Consensus       113 ~~~~l~~h~~~v~~~~~~-----~~~~l~sgs~dg~i~vwd~~~~~-------------~~~~~~~h~~~V~~l~~~~~~  174 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINKK-------------FLLQLSGHDGGVWALKYAHGG  174 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE-----ETTEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEECSTT
T ss_pred             ceEEEcCCCCCcEEEEEE-----CCCEEEEEcCCCcEEEEECCCCc-------------EEEEEeCCCcCEEEEEEcCCC
Confidence            345778998886 45544     67899999999999999997763             377788999999999999887


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeC--CCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHP--TNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                       +|++|+.||+|++||+.+++++..+.+|...|.+++|++  ++ .++++++.||.|++||+++................
T Consensus       175 -~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~  252 (464)
T 3v7d_B          175 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV  252 (464)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred             -EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence             999999999999999999999999999999999999995  44 89999999999999999877654322111000000


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                      ..    .............+|...+.++  ++++..+++ |+.|+.|++||+++++...           ....|...|.
T Consensus       253 ~~----~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~-~~~d~~i~vwd~~~~~~~~-----------~~~~~~~~v~  314 (464)
T 3v7d_B          253 FH----TPEENPYFVGVLRGHMASVRTV--SGHGNIVVS-GSYDNTLIVWDVAQMKCLY-----------ILSGHTDRIY  314 (464)
T ss_dssp             ES----CGGGCTTEEEEECCCSSCEEEE--EEETTEEEE-EETTSCEEEEETTTTEEEE-----------EECCCSSCEE
T ss_pred             ee----ccCCCeEEEEEccCccceEEEE--cCCCCEEEE-EeCCCeEEEEECCCCcEEE-----------EecCCCCCEE
Confidence            00    0000111233556777888877  577888877 5589999999999877665           3566788899


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      +++|+|++.++++++.||.|++||+.+.  ..+..+.++  ...+.+++|+  +++|++|+.||.|++||+.+....  .
T Consensus       315 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~--~  386 (464)
T 3v7d_B          315 STIYDHERKRCISASMDTTIRIWDLENG--ELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--F  386 (464)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTTT--EEEEEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE--E
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee--e
Confidence            9999999999999999999999998763  345555554  3457778887  589999999999999999886542  2


Q ss_pred             eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccch
Q 010390          359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTE  418 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (512)
                      ...|...+..++|++++ .+|++++ ||.|++||+.+++++...... ....++.+.+++
T Consensus       387 ~~~~~~~~~~~~~~~~~-~~l~~~~-dg~i~iwd~~~g~~~~~~~~~-~~~~v~~v~~~~  443 (464)
T 3v7d_B          387 SYHHTNLSAITTFYVSD-NILVSGS-ENQFNIYNLRSGKLVHANILK-DADQIWSVNFKG  443 (464)
T ss_dssp             EEECTTCCCEEEEEECS-SEEEEEE-TTEEEEEETTTCCEEESCTTT-TCSEEEEEEEET
T ss_pred             eecCCCCccEEEEEeCC-CEEEEec-CCeEEEEECCCCcEEehhhcc-CCCcEEEEEecC
Confidence            23466778889999999 8999988 899999999999988753322 245666666653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.1e-37  Score=290.85  Aligned_cols=262  Identities=14%  Similarity=0.234  Sum_probs=219.3

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      ....+.+|.+.|++++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|++ .+|++++.|+.+++|+
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYP  134 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEE
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEE
Confidence            366788999999999999999999999999999999999999888888899999999999998 9999999999999999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~  259 (512)
                      +........                     ......+..|...|.++.|+|++..++++ +.|+.|++||+++++...  
T Consensus       135 ~~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~D~~v~lwd~~~~~~~~--  190 (354)
T 2pbi_B          135 LTFDKNENM---------------------AAKKKSVAMHTNYLSACSFTNSDMQILTA-SGDGTCALWDVESGQLLQ--  190 (354)
T ss_dssp             CCCCTTCCS---------------------GGGCEEEEECSSCEEEEEECSSSSEEEEE-ETTSEEEEEETTTCCEEE--
T ss_pred             Eeccccccc---------------------cccceeeeccCCcEEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCeEEE--
Confidence            875432110                     11223455788999999999999998874 479999999999887654  


Q ss_pred             cCCCccccccccccccCeeEEEeCC--CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDS--NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  337 (512)
                               .+..|...|.+++++|  ++.+|++++.||.|++||+++.  ..+..+..|  ...+.+++|+|++++|++
T Consensus       191 ---------~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~--~~~~~~~~h--~~~v~~v~~~p~~~~l~s  257 (354)
T 2pbi_B          191 ---------SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG--QCVQAFETH--ESDVNSVRYYPSGDAFAS  257 (354)
T ss_dssp             ---------EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC--CEEEEECCC--SSCEEEEEECTTSSEEEE
T ss_pred             ---------EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC--cEEEEecCC--CCCeEEEEEeCCCCEEEE
Confidence                     4667888899999987  5789999999999999999764  344555544  356889999999999999


Q ss_pred             ecCCCCEEEEecCCCCCCCceecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      |+.|++|++||++..... ..+..  +...+.+++|+|++ .+|++|+.|+.|++||+.+++.+..
T Consensus       258 ~s~D~~v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~~g-~~l~~g~~d~~i~vwd~~~~~~~~~  321 (354)
T 2pbi_B          258 GSDDATCRLYDLRADREV-AIYSKESIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRVSI  321 (354)
T ss_dssp             EETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEE
T ss_pred             EeCCCeEEEEECCCCcEE-EEEcCCCcccceeEEEEeCCC-CEEEEEECCCcEEEEECCCCceEEE
Confidence            999999999999876542 33332  34578999999999 8999999999999999988875543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-37  Score=297.16  Aligned_cols=297  Identities=15%  Similarity=0.268  Sum_probs=235.1

Q ss_pred             eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEEecCC
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCWIKED  120 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~  120 (512)
                      ......+|.+.+....+   ++++..+++++.||.|+|||+.++..             ...+. .|...|++++|+|++
T Consensus        83 ~~~~~~~~~~~~~~~~~---~~s~~~l~~~~~d~~v~lw~~~~~~~-------------~~~~~~~~~~~v~~v~~s~~~  146 (401)
T 4aez_A           83 RVLDAPGIIDDYYLNLL---DWSNLNVVAVALERNVYVWNADSGSV-------------SALAETDESTYVASVKWSHDG  146 (401)
T ss_dssp             EEEECTTCCCCTTCBCE---EECTTSEEEEEETTEEEEEETTTCCE-------------EEEEECCTTCCEEEEEECTTS
T ss_pred             eeeeCCCCcCCceEEEE---eecCCCEEEEECCCeEEEeeCCCCcE-------------eEeeecCCCCCEEEEEECCCC
Confidence            34555677776554333   22345577788899999999987643             22233 388999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      ++|++|+.||.|++||+.+++.+..+.+|...|.+++|++   .+|++++.||.|++||++....               
T Consensus       147 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~---------------  208 (401)
T 4aez_A          147 SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANH---------------  208 (401)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC---------------
T ss_pred             CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcc---------------
Confidence            9999999999999999999999999999999999999953   7999999999999999984321               


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                 ....+..|...|.+++|+|++..+++ |+.|+.|++||+++.....           ....|...|.++
T Consensus       209 -----------~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~v~iwd~~~~~~~~-----------~~~~~~~~v~~~  265 (401)
T 4aez_A          209 -----------QIGTLQGHSSEVCGLAWRSDGLQLAS-GGNDNVVQIWDARSSIPKF-----------TKTNHNAAVKAV  265 (401)
T ss_dssp             -----------EEEEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTCSSEEE-----------EECCCSSCCCEE
T ss_pred             -----------eeeEEcCCCCCeeEEEEcCCCCEEEE-EeCCCeEEEccCCCCCccE-----------EecCCcceEEEE
Confidence                       12245578889999999999998887 4589999999999876654           355677889999


Q ss_pred             EeCCCCC-EEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE--ecCCCCEEEEecCCCCCC
Q 010390          281 SQDSNGV-FLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS--GSSDGNAYVWQVNKPQAD  355 (512)
Q Consensus       281 ~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg~i~iw~~~~~~~~  355 (512)
                      +|+|++. ++++++  .|+.|++||+.+.  ..+..+.   ....+.+++|+|++++|++  |+.||.|++|++.++...
T Consensus       266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~--~~~~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~  340 (401)
T 4aez_A          266 AWCPWQSNLLATGGGTMDKQIHFWNAATG--ARVNTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT  340 (401)
T ss_dssp             EECTTSTTEEEEECCTTTCEEEEEETTTC--CEEEEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred             EECCCCCCEEEEecCCCCCEEEEEECCCC--CEEEEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence            9999765 555654  7999999998763  3333333   2346889999999999998  668999999999886432


Q ss_pred             -CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          356 -PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       356 -~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                       ...+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..
T Consensus       341 ~~~~~~~h~~~v~~~~~s~dg-~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          341 KQVDIPAHDTRVLYSALSPDG-RILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             EEEEEECCSSCCCEEEECTTS-SEEEEECTTSEEEEEECCC------
T ss_pred             eEEEecCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCccccc
Confidence             23467899999999999999 8999999999999999999987664

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.2e-37  Score=282.45  Aligned_cols=256  Identities=19%  Similarity=0.227  Sum_probs=206.8

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC--CeeeecccCcCCCEEEEEeeCC-CCCeEEEEeCCCcEEE
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK--KKCTGALMGHTGSIKSLCSHPT-NSDILVSGSRDGSFAI  177 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~v  177 (512)
                      +..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+  .+++.++.+|.+.|++++|++. .+.+|++|+.|++|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            345679999999999999999999999999999999974  3678889999999999999864 2389999999999999


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCccc
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLKA  255 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~~  255 (512)
                      ||++++....                         ...+..|...|.+++|+|+  +..+++ ++.|+.|++||+++...
T Consensus        82 Wd~~~~~~~~-------------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s-~s~d~~v~~wd~~~~~~  135 (297)
T 2pm7_B           82 WKEENGRWSQ-------------------------IAVHAVHSASVNSVQWAPHEYGPMLLV-ASSDGKVSVVEFKENGT  135 (297)
T ss_dssp             EEBSSSCBCC-------------------------CEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEEBCSSSC
T ss_pred             EEcCCCceEE-------------------------EEEeecCCCceeEEEeCcCCCCcEEEE-EECCCcEEEEEecCCCc
Confidence            9998653211                         1134467889999999997  666766 56899999999987532


Q ss_pred             eecccCCCccccccccccccCeeEEEeCCC-------------CCEEEEEecCCeEEEEEcccCCCC--ceEeeeeceec
Q 010390          256 QITQAWPHAESSSAKETRLHGISSLSQDSN-------------GVFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRIE  320 (512)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~  320 (512)
                      ....         ....|...|.+++|+|+             +++|++++.|+.|++||++.....  ....+.+|  .
T Consensus       136 ~~~~---------~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H--~  204 (297)
T 2pm7_B          136 TSPI---------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--S  204 (297)
T ss_dssp             BCCE---------EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--S
T ss_pred             eeee---------eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC--C
Confidence            2111         45678889999999997             579999999999999999764322  23344444  4


Q ss_pred             eeEEEEEECCCC---CEEEEecCCCCEEEEecCCCCCCC--cee--ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          321 SFYVKSEICPNA---SHILSGSSDGNAYVWQVNKPQADP--IKL--KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       321 ~~~~~~~~s~~~---~~l~~g~~dg~i~iw~~~~~~~~~--~~~--~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      ..+.+++|+|++   ++|++|+.|++|+|||+.......  ..+  ..|...|.+++|+|++ .+|++++.||.|++|+.
T Consensus       205 ~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          205 DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEE
T ss_pred             CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEE
Confidence            568899999984   899999999999999998753211  122  4678899999999999 89999999999999997


Q ss_pred             C
Q 010390          394 E  394 (512)
Q Consensus       394 ~  394 (512)
                      .
T Consensus       284 ~  284 (297)
T 2pm7_B          284 N  284 (297)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6e-38  Score=343.07  Aligned_cols=363  Identities=20%  Similarity=0.317  Sum_probs=269.7

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-  118 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-  118 (512)
                      +.....+.+|.+.|.+++|   +|+|++||+|+.||.|+|||+.++.             .+..+.+|...|.+++|+| 
T Consensus       647 ~~~~~~~~~h~~~v~~~~~---s~~~~~l~s~~~d~~v~vwd~~~~~-------------~~~~~~~~~~~v~~~~~~~~  710 (1249)
T 3sfz_A          647 GEKLLDIKAHEDEVLCCAF---SSDDSYIATCSADKKVKIWDSATGK-------------LVHTYDEHSEQVNCCHFTNK  710 (1249)
T ss_dssp             CCEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEECSS
T ss_pred             CCEEEEeccCCCCEEEEEE---ecCCCEEEEEeCCCeEEEEECCCCc-------------eEEEEcCCCCcEEEEEEecC
Confidence            3456677899999999999   9999999999999999999998764             3777889999999999999 


Q ss_pred             -CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc----
Q 010390          119 -EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES----  193 (512)
Q Consensus       119 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----  193 (512)
                       ++.++++|+.|+.|++||+.+++++..+.+|.+.|++++|+|++ .+|++++.||.|++||+.++..........    
T Consensus       711 ~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~  789 (1249)
T 3sfz_A          711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLS  789 (1249)
T ss_dssp             SSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--
T ss_pred             CCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccc
Confidence             55689999999999999999999999999999999999999988 899999999999999997653221110000    


Q ss_pred             ----------ee------------------------------------------eecccccccc--------------cc
Q 010390          194 ----------FV------------------------------------------FSSAVVKGAH--------------LL  207 (512)
Q Consensus       194 ----------~~------------------------------------------~~~~~~~~~~--------------~~  207 (512)
                                .+                                          ....+.+.+.              ..
T Consensus       790 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~  869 (1249)
T 3sfz_A          790 SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI  869 (1249)
T ss_dssp             ------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEET
T ss_pred             cCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Confidence                      00                                          0000000000              00


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec-----------------------------
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT-----------------------------  258 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~-----------------------------  258 (512)
                      ..........+|...|.+++|+|++..+++++ .||.|++||+.+......                             
T Consensus       870 ~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  948 (1249)
T 3sfz_A          870 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL  948 (1249)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEE
T ss_pred             CCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEE
Confidence            11222345567889999999999999988754 799999999764211000                             


Q ss_pred             ---------------------------------------ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390          259 ---------------------------------------QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY  299 (512)
Q Consensus       259 ---------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  299 (512)
                                                             ..............|...|.+++|+|++++|++++.||.|+
T Consensus       949 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A          949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp             EEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEE
T ss_pred             EecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence                                                   00000011123456778899999999999999999999999


Q ss_pred             EEEcccCCCC--------------------------------------ceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390          300 LYNVLQLDKG--------------------------------------PIQHFSGCRIESFYVKSEICPNASHILSGSSD  341 (512)
Q Consensus       300 i~d~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  341 (512)
                      +||+.+....                                      ....+.+  ....+.+++|+|++++|++++.|
T Consensus      1029 vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~s~s~d 1106 (1249)
T 3sfz_A         1029 VWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC--HQGTVLSCAISSDATKFSSTSAD 1106 (1249)
T ss_dssp             EEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC--CSSCCCCEEECSSSSSCEEECCS
T ss_pred             EEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc--cCCcEEEEEECCCCCEEEEEcCC
Confidence            9997543210                                      0111111  22346678999999999999999


Q ss_pred             CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCc-------cccceeeee
Q 010390          342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPS-------SVRRRVMAI  414 (512)
Q Consensus       342 g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~  414 (512)
                      |.|++||+.++.. ...+.+|.+.|++++|+|++ .+|++++.||.|++||+.+++++....+.       .+...+..+
T Consensus      1107 ~~v~iwd~~~~~~-~~~l~~h~~~v~~~~~s~dg-~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A         1107 KTAKIWSFDLLSP-LHELKGHNGCVRCSAFSLDG-ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp             SCCCEECSSSSSC-SBCCCCCSSCEEEEEECSSS-SEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred             CcEEEEECCCcce-eeeeccCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence            9999999988775 56788999999999999999 89999999999999999999987765321       223344445


Q ss_pred             ccchhccccc
Q 010390          415 PSTECRKLFM  424 (512)
Q Consensus       415 ~~~~~~~~~~  424 (512)
                      .+++...+++
T Consensus      1185 ~fs~dg~~l~ 1194 (1249)
T 3sfz_A         1185 CFSPDSKTLV 1194 (1249)
T ss_dssp             EECTTSSCEE
T ss_pred             EECCCCCEEE
Confidence            5555444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.4e-37  Score=325.80  Aligned_cols=298  Identities=15%  Similarity=0.228  Sum_probs=250.2

Q ss_pred             eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      +...+.+|.+.|.+++|   +|+|++||+|+.||.|+|||+.++.             .+..+.+|.+.|++++|+|+++
T Consensus         5 ~~~~~~~h~~~v~~i~~---sp~~~~la~~~~~g~v~iwd~~~~~-------------~~~~~~~~~~~v~~~~~s~~~~   68 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDF---HPTEPWVLTTLYSGRVEIWNYETQV-------------EVRSIQVTETPVRAGKFIARKN   68 (814)
T ss_dssp             CEEEEEEECSCEEEEEE---CSSSSEEEEEETTSEEEEEETTTTE-------------EEEEEECCSSCEEEEEEEGGGT
T ss_pred             cceeeecCCCceEEEEE---CCCCCEEEEEeCCCEEEEEECCCCc-------------eEEEEecCCCcEEEEEEeCCCC
Confidence            34567899999999999   9999999999999999999997753             3677889999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      +|++|+.||.|+|||+.+++.+..+.+|.+.|.+++|+|++ .+|++++.||.|++||+.++.                 
T Consensus        69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~-----------------  130 (814)
T 3mkq_A           69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNW-----------------  130 (814)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTS-----------------
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCc-----------------
Confidence            99999999999999999999999999999999999999998 899999999999999987542                 


Q ss_pred             cccccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                               .....+..|...|.+++|+| ++..+++ ++.||.|++||+.+.......          ...+...+.++
T Consensus       131 ---------~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~v~vwd~~~~~~~~~~----------~~~~~~~v~~~  190 (814)
T 3mkq_A          131 ---------ALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQSTPNFTL----------TTGQERGVNYV  190 (814)
T ss_dssp             ---------EEEEEEECCSSCEEEEEEETTEEEEEEE-EETTSEEEEEETTCSSCSEEE----------ECCCTTCCCEE
T ss_pred             ---------eEEEEEcCCCCcEEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCcceeEE----------ecCCCCCEEEE
Confidence                     11224557788999999999 6666665 668999999999876654432          23334779999


Q ss_pred             EeCC--CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          281 SQDS--NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       281 ~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      +|+|  ++.+|++++.||.|++||+...  .....+.++  ...+.+++|+|++++|++++.||.|++||+.+++. ...
T Consensus       191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-~~~  265 (814)
T 3mkq_A          191 DYYPLPDKPYMITASDDLTIKIWDYQTK--SCVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-EKT  265 (814)
T ss_dssp             EECCSTTCCEEEEECTTSEEEEEETTTT--EEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE-EEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCC--cEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEE
Confidence            9999  9999999999999999998653  334445444  35588899999999999999999999999988765 467


Q ss_pred             eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      +..|...|.+++|+|++...+++++.|+.+.+|++..+..
T Consensus       266 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          266 LNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP  305 (814)
T ss_dssp             ECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred             eecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence            7888899999999999844445556677799999876554

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.5e-37  Score=291.90  Aligned_cols=315  Identities=18%  Similarity=0.191  Sum_probs=226.3

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CCC
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--EDT  121 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~  121 (512)
                      ..+.||.+.|.+++|   +|++++||+|+.||.|+|||+.+....         ......+.+|...|++++|+|  +++
T Consensus         5 ~~~~gH~~~v~~~~~---~~~~~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~d~~   72 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVY---DFYGRHVATCSSDQHIKVFKLDKDTSN---------WELSDSWRAHDSSIVAIDWASPEYGR   72 (351)
T ss_dssp             CEECCCSSCEEEEEE---CSSSSEEEEEETTSEEEEEEECSSSCC---------EEEEEEEECCSSCEEEEEECCGGGCS
T ss_pred             ccCcccccceeEEEE---cCCCCEEEEeeCCCeEEEEECCCCCCc---------ceecceeccCCCcEEEEEEcCCCCCC
Confidence            456799999999999   999999999999999999999865321         134667789999999999999  699


Q ss_pred             EEEEEeCCCcEEEEeCCCC---------eeeecccCcCCCEEEEEeeCC--CCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390          122 NILTASGDQTIKIWDAEKK---------KCTGALMGHTGSIKSLCSHPT--NSDILVSGSRDGSFAIWDLRCKSSPKSNC  190 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  190 (512)
                      +|++|+.||.|++||+.++         +.+..+..|...|.+++|+|+  + .+|++++.||.|++||+++++......
T Consensus        73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~  151 (351)
T 3f3f_A           73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWT  151 (351)
T ss_dssp             EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred             EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccc
Confidence            9999999999999999887         557788899999999999998  6 899999999999999999887655432


Q ss_pred             ccceeeecccccccccccccccceecccccccEEEEEEeec---CCEEEEEeecCCeEEEEeccCccceecccCCCcccc
Q 010390          191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD---EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS  267 (512)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  267 (512)
                      ........              ......+...+.+++|+|+   +..+++ ++.++.+.+|+..........        
T Consensus       152 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~--------  208 (351)
T 3f3f_A          152 LTSEMKVL--------------SIPPANHLQSDFCLSWCPSRFSPEKLAV-SALEQAIIYQRGKDGKLHVAA--------  208 (351)
T ss_dssp             EEEEEESC--------------SCCCSSCSCCCEEEEECCCSSSCCEEEE-EETTEEEEEEECTTSCEEEEE--------
T ss_pred             cccccccc--------------ccccCCcccceeEEEeccCCCCCcEEEE-ecCCCcEEEEccCCCceeeee--------
Confidence            21111100              0112356778999999997   666666 557999988887766542221        


Q ss_pred             ccccccccCeeEEEeCCCC----CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec----
Q 010390          268 SAKETRLHGISSLSQDSNG----VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS----  339 (512)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----  339 (512)
                       ....|...|.+++|+|++    .+|++++.||.|++||++........  ...  .........++....++.+.    
T Consensus       209 -~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~  283 (351)
T 3f3f_A          209 -KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLAS--EES--LTNSNMFDNSADVDMDAQGRSDSN  283 (351)
T ss_dssp             -ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred             -ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcccc--CCc--ccceeccCCCcccccccccccccc
Confidence             456678899999999998    89999999999999999764322111  111  11111223333333443333    


Q ss_pred             CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ....+.+|+....+. ...+.+|...|++++|+|++ .+|++++.||.|++||+.+++....
T Consensus       284 ~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          284 TEEKAELQSNLQVEL-LSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             -------CCSEEEEE-EEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             cceeeeecccccccE-EEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCcchhh
Confidence            334455555444333 45678899999999999999 8999999999999999998865543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=280.57  Aligned_cols=285  Identities=18%  Similarity=0.285  Sum_probs=228.7

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI  132 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i  132 (512)
                      .++|+|   |+++ +||+|. |++|+|||+++++.           .....+.+|...|++++|+|++++|++|+.||+|
T Consensus        28 ~~~l~W---S~~~-~lAvg~-D~tV~iWd~~tg~~-----------~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v   91 (318)
T 4ggc_A           28 LNLVDW---SSGN-VLAVAL-DNSVYLWSASSGDI-----------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV   91 (318)
T ss_dssp             CBCEEE---CTTS-EEEEEE-TTEEEEEETTTCCE-----------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ceEEEE---CCCC-EEEEEe-CCEEEEEECCCCCE-----------EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence            467888   8876 888875 99999999988743           2234456788999999999999999999999999


Q ss_pred             EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccc
Q 010390          133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKR  212 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (512)
                      ++||+++++++..+.+|...+.++.+.+   ..+++++.++.+++|+......                          .
T Consensus        92 ~iw~~~~~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~--------------------------~  142 (318)
T 4ggc_A           92 QLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEH--------------------------H  142 (318)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSC--------------------------E
T ss_pred             EEeecCCceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCce--------------------------e
Confidence            9999999999999999999998877653   7899999999999999875432                          2


Q ss_pred             ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEE---
Q 010390          213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL---  289 (512)
Q Consensus       213 ~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---  289 (512)
                      ......|...+..+.+.+++..+++ ++.|+.|++||+++++.......       ....+...|.++.+++++..+   
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~  214 (318)
T 4ggc_A          143 VATLSGHSQEVCGLRWAPDGRHLAS-GGNDNLVNVWPSAPGEGGWVPLQ-------TFTQHQGAVKAVAWCPWQSNVLAT  214 (318)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEESSCBTTBSCCSE-------EECCCCSCEEEEEECTTSTTEEEE
T ss_pred             EEEEcCccCceEEEEEcCCCCEEEE-EecCcceeEEECCCCccccccee-------eecccCCceEEEEecCCCCcEEEE
Confidence            2345678889999999999998887 55899999999998764432211       345566789999999876533   


Q ss_pred             EEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe--cCCCCEEEEecCCCCCCCceeccccCCeE
Q 010390          290 TASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG--SSDGNAYVWQVNKPQADPIKLKSHDGEVT  367 (512)
Q Consensus       290 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g--~~dg~i~iw~~~~~~~~~~~~~~h~~~v~  367 (512)
                      ++++.++.|++||......  ...   ......+..+.|+++++.++++  +.|+.|++||+.+++. +..+.+|.+.|+
T Consensus       215 ~~~~~~~~i~lwd~~~~~~--~~~---~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~-~~~l~gH~~~V~  288 (318)
T 4ggc_A          215 GGGTSDRHIRIWNVCSGAC--LSA---VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-VAELKGHTSRVL  288 (318)
T ss_dssp             EECTTTCEEEEEETTTCCE--EEE---EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-EEEECCCSSCEE
T ss_pred             EecCCCCEEEEEecccccc--ccc---ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE-EEEEcCCCCCEE
Confidence            4566889999999865322  111   1223446778999999888654  4799999999998876 578899999999


Q ss_pred             EEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          368 AVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +++|+|++ .+|+|||.||+|+|||+.+.+
T Consensus       289 ~l~~spdg-~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          289 SLTMSPDG-ATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEECTTS-SCEEEEETTTEEEEECCSCCC
T ss_pred             EEEEcCCC-CEEEEEecCCeEEEEECCCCC
Confidence            99999999 899999999999999997643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.1e-37  Score=287.14  Aligned_cols=289  Identities=13%  Similarity=0.131  Sum_probs=236.5

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC-EE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT-NI  123 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l  123 (512)
                      ...+|.+.|.+++|   +|++++|++|+.||.|+|||+.+...          ......+.+|...|++++|+|+++ +|
T Consensus         6 ~~~~h~~~v~~~~~---s~~~~~l~~~~~d~~v~iw~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l   72 (342)
T 1yfq_A            6 IEQAPKDYISDIKI---IPSKSLLLITSWDGSLTVYKFDIQAK----------NVDLLQSLRYKHPLLCCNFIDNTDLQI   72 (342)
T ss_dssp             CSSCCSSCEEEEEE---EGGGTEEEEEETTSEEEEEEEETTTT----------EEEEEEEEECSSCEEEEEEEESSSEEE
T ss_pred             cccCCCCcEEEEEE---cCCCCEEEEEcCCCeEEEEEeCCCCc----------cccceeeeecCCceEEEEECCCCCcEE
Confidence            34589999999999   99999999999999999999976531          112344568999999999999999 99


Q ss_pred             EEEeCCCcEEEEeC-CCCeeeecccC--cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC---------CCCCCCccc
Q 010390          124 LTASGDQTIKIWDA-EKKKCTGALMG--HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC---------KSSPKSNCA  191 (512)
Q Consensus       124 ~s~~~dg~i~iwd~-~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~  191 (512)
                      ++|+.||.|++||+ .+++. ..+.+  |...|.+++|+| + .+|++++.|+.|++||+++         .+...    
T Consensus        73 ~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~----  145 (342)
T 1yfq_A           73 YVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN----  145 (342)
T ss_dssp             EEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSS----
T ss_pred             EEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeee----
Confidence            99999999999999 77755 66778  999999999999 6 8999999999999999875         32221    


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCccccccc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAK  270 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~  270 (512)
                                             .+ .+...+.+++|++++  +++ ++.|+.|++||+++ .......         ..
T Consensus       146 -----------------------~~-~~~~~v~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~---------~~  189 (342)
T 1yfq_A          146 -----------------------NT-KVKNKIFTMDTNSSR--LIV-GMNNSQVQWFRLPLCEDDNGTI---------EE  189 (342)
T ss_dssp             -----------------------SS-SSCCCEEEEEECSSE--EEE-EESTTEEEEEESSCCTTCCCEE---------EE
T ss_pred             -----------------------EE-eeCCceEEEEecCCc--EEE-EeCCCeEEEEECCcccccccee---------ee
Confidence                                   12 267789999999887  554 56899999999998 5432211         23


Q ss_pred             cccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccC--C--CCceEeeeecee-------ceeEEEEEECCCCCEEEEe
Q 010390          271 ETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQL--D--KGPIQHFSGCRI-------ESFYVKSEICPNASHILSG  338 (512)
Q Consensus       271 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~--~--~~~~~~~~~~~~-------~~~~~~~~~s~~~~~l~~g  338 (512)
                      ..+...+.+++|+| ++.++++++.||.|++|++...  .  ......+..+..       ...+.+++|+|++++|++|
T Consensus       190 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  269 (342)
T 1yfq_A          190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA  269 (342)
T ss_dssp             CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred             cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe
Confidence            45567899999999 9999999999999999998764  1  245555665533       3368899999999999999


Q ss_pred             cCCCCEEEEecCCCCCCCceeccc-cCCeEEEEeCCCCCCeEEEEeCCCc-EEEEeC
Q 010390          339 SSDGNAYVWQVNKPQADPIKLKSH-DGEVTAVNWCPNEAGKIVTSSDDYT-VRLWSL  393 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~~dg~-i~vwd~  393 (512)
                      +.||.|++||+.+++. ...+.+| ...|++++  |++ .+|++++.||. .+.|..
T Consensus       270 ~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~~~--~~~-~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          270 GSDGIISCWNLQTRKK-IKNFAKFNEDSVVKIA--CSD-NILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ETTSCEEEEETTTTEE-EEECCCCSSSEEEEEE--ECS-SEEEEEEECTHHHHCSSS
T ss_pred             cCCceEEEEcCccHhH-hhhhhcccCCCceEec--CCC-CeEEEEecCCcccccccc
Confidence            9999999999998776 4667788 99999999  888 89999999998 555553

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.8e-37  Score=295.85  Aligned_cols=300  Identities=15%  Similarity=0.235  Sum_probs=234.1

Q ss_pred             EecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 010390           60 KTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK  139 (512)
Q Consensus        60 ~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~  139 (512)
                      .+++++++||+|+.||.|+|||+.++.             ....+.+|.+.|++++|+|++++|++|+.|+.|++||+.+
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~  170 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNL-------------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD  170 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCE-------------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcc-------------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence            359999999999999999999987653             3566789999999999999999999999999999999999


Q ss_pred             CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc----eeeeccccccccccccccccee
Q 010390          140 KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES----FVFSSAVVKGAHLLSQSKRVSR  215 (512)
Q Consensus       140 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  215 (512)
                      ++.+..+.+|...|.+++|+|++ .+|++++.||.|++||+++++.........    .+....+...       .....
T Consensus       171 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~  242 (420)
T 3vl1_A          171 GSNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVG-------TDRQL  242 (420)
T ss_dssp             CCCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEEC-------CCSSC
T ss_pred             CcCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecC-------Cccee
Confidence            99999999999999999999988 899999999999999998765433221100    0000000000       00001


Q ss_pred             cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEEEec
Q 010390          216 RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCM  294 (512)
Q Consensus       216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~  294 (512)
                      ...+...+.+++|+|++..+++ |+.||.|++||+++++.....          ...|...|.+++|+|++. +|++++.
T Consensus       243 ~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~~g~~  311 (420)
T 3vl1_A          243 HEISTSKKNNLEFGTYGKYVIA-GHVSGVITVHNVFSKEQTIQL----------PSKFTCSCNSLTVDGNNANYIYAGYE  311 (420)
T ss_dssp             GGGCCCCCCTTCSSCTTEEEEE-EETTSCEEEEETTTCCEEEEE----------CCTTSSCEEEEEECSSCTTEEEEEET
T ss_pred             eecccCcccceEEcCCCCEEEE-EcCCCeEEEEECCCCceeEEc----------ccccCCCceeEEEeCCCCCEEEEEeC
Confidence            2234566777888899988877 558999999999988765542          345667899999999999 9999999


Q ss_pred             CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC--------CceeccccCCe
Q 010390          295 DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD--------PIKLKSHDGEV  366 (512)
Q Consensus       295 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~--------~~~~~~h~~~v  366 (512)
                      ||.|++||+++... ++..+..+. ...+..+. .+++++|++++.|+.|++|++......        ...+..|.+.|
T Consensus       312 dg~i~vwd~~~~~~-~~~~~~~~~-~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v  388 (420)
T 3vl1_A          312 NGMLAQWDLRSPEC-PVGEFLINE-GTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAV  388 (420)
T ss_dssp             TSEEEEEETTCTTS-CSEEEEEST-TSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCC
T ss_pred             CCeEEEEEcCCCcC-chhhhhccC-CCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcce
Confidence            99999999977533 344444432 23455564 467889999999999999999874221        23566788999


Q ss_pred             EEEEeCCCCCC---eEEEEeCCCcEEEEeCCC
Q 010390          367 TAVNWCPNEAG---KIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       367 ~~v~~~~~~~~---~l~s~~~dg~i~vwd~~~  395 (512)
                      .+++|+|++ .   .+++++.+|.+.+|++++
T Consensus       389 ~~~~~s~~~-~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          389 SQFCYVSDD-ESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CEEEEECCS-SSSCEEEEEETTTEEEEEESCC
T ss_pred             EEEEEccCC-CCcceEEEEcCCceEEEEeccC
Confidence            999999999 6   688888899999999875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-38  Score=307.85  Aligned_cols=300  Identities=12%  Similarity=0.076  Sum_probs=216.8

Q ss_pred             ecCCccCCcceEEEEEecCC------CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390           45 EHHGEETPPLAVSFCKTSKN------SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK  118 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~------~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~  118 (512)
                      .+.+|.+.|.+|+|   +|+      +.+||+|+.||+|+|||+..+.......  .....+...+.+|...|++++|++
T Consensus       202 ~l~~~~~~V~~v~w---sp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--~~~~~p~~~l~~h~~~v~sv~~s~  276 (524)
T 2j04_B          202 TIVHSFGEVWDLKW---HEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--KMCEKPSLTLSLADSLITTFDFLS  276 (524)
T ss_dssp             EEEECCCSEEEEEE---CSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--ECCCSCSEEECCTTTCEEEEEESS
T ss_pred             EEEecCCcEEEEEE---CCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--eeecCceEEEEcCCCCEEEEEecC
Confidence            34567889999999   665      6799999999999999997653210000  000122456789999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCe-eeecccCcCCCEEEE--EeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          119 EDTNILTASGDQTIKIWDAEKKK-CTGALMGHTGSIKSL--CSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l--~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      + ..|++|+.||+|++||+++++ +...+.+|...|+++  .|+|++.++|++++.|++|++||+++++...        
T Consensus       277 ~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~--------  347 (524)
T 2j04_B          277 P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK--------  347 (524)
T ss_dssp             S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC--------
T ss_pred             C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc--------
Confidence            6 489999999999999999774 445688999999999  4666544799999999999999998543221        


Q ss_pred             eecccccccccccccccceeccccc--ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAAS--MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR  273 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  273 (512)
                                         .+.+|.  ..|.+++|+|++..+++ ++.|+.|++||++++....           .+.+|
T Consensus       348 -------------------~~~~~~~~~~v~~v~fsp~~~~l~s-~~~d~tv~lwd~~~~~~~~-----------~l~gH  396 (524)
T 2j04_B          348 -------------------TTVSRFRGSNLVPVVYCPQIYSYIY-SDGASSLRAVPSRAAFAVH-----------PLVSR  396 (524)
T ss_dssp             -------------------EEEEECSCCSCCCEEEETTTTEEEE-ECSSSEEEEEETTCTTCCE-----------EEEEC
T ss_pred             -------------------ccccccccCcccceEeCCCcCeEEE-eCCCCcEEEEECcccccce-----------eeecC
Confidence                               112222  24789999999998776 4479999999999876544           35678


Q ss_pred             ccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec---eeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          274 LHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC---RIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      ...|++++|+|++++|++|+.||+|++||+...   .+......   .....+..++|+|+++.+.. ..+  +.+|+..
T Consensus       397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~---~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~  470 (524)
T 2j04_B          397 ETTITAIGVSRLHPMVLAGSADGSLIITNAARR---LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLT  470 (524)
T ss_dssp             SSCEEEEECCSSCCBCEEEETTTEEECCBSCSS---TTTCC------CCCCEEEECBCCSSSCEEEE-CCC--CCCCC--
T ss_pred             CCceEEEEeCCCCCeEEEEECCCEEEEEechHh---hccccccCccceeeeEEEEeccCCCCCeEEc-cCC--ceecccc
Confidence            899999999999999999999999999997542   11111110   11124567899999985532 222  3344333


Q ss_pred             -CCCCCCceeccccCCeEEEEeCCCCC--CeEEEEeCCCcEEEEeCCCC
Q 010390          351 -KPQADPIKLKSHDGEVTAVNWCPNEA--GKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       351 -~~~~~~~~~~~h~~~v~~v~~~~~~~--~~l~s~~~dg~i~vwd~~~~  396 (512)
                       ++. ....+.+|...|.+|+|+|+++  ..+++|+.||.|+||++...
T Consensus       471 ~~g~-~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          471 VNDV-SKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             ------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             cCCc-ceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence             223 3467889999999999999962  48999999999999998754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.2e-37  Score=282.68  Aligned_cols=258  Identities=19%  Similarity=0.297  Sum_probs=215.4

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      .....+.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++ ++|++++.|+.|++|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIW   92 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEE
Confidence            4466788999999999999999999999999999999999999999999999999999999988 899999999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      |+++++.                           ...+..|...|.++.|+|++..+++ |+.|+.|++||+++++... 
T Consensus        93 d~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~-  143 (312)
T 4ery_A           93 DVSSGKC---------------------------LKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVKTGKCLK-  143 (312)
T ss_dssp             ETTTCCE---------------------------EEEEECCSSCEEEEEECSSSSEEEE-EETTSCEEEEETTTCCEEE-
T ss_pred             ECCCCcE---------------------------EEEEcCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCEEEE-
Confidence            9986542                           2245577889999999999998887 5589999999999877654 


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  338 (512)
                                ....|...|.+++|+|++.+|++++.||.|++||++...  .+..+.. .....+..++|+|++++|+++
T Consensus       144 ----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  210 (312)
T 4ery_A          144 ----------TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLID-DDNPPVSFVKFSPNGKYILAA  210 (312)
T ss_dssp             ----------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECC-SSCCCEEEEEECTTSSEEEEE
T ss_pred             ----------EecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeeEEec-cCCCceEEEEECCCCCEEEEE
Confidence                      355677889999999999999999999999999987632  2332222 123457779999999999999


Q ss_pred             cCCCCEEEEecCCCCCCCceeccccCCeE--EEEeC-CCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          339 SSDGNAYVWQVNKPQADPIKLKSHDGEVT--AVNWC-PNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~~~~~~~h~~~v~--~v~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      +.|+.|++||+.+++. ...+.+|...+.  ...++ +++ .+|++|+.||.|++||+.+++++..
T Consensus       211 ~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~  274 (312)
T 4ery_A          211 TLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIFANFSVTGG-KWIVSGSEDNLVYIWNLQTKEIVQK  274 (312)
T ss_dssp             ETTTEEEEEETTTTEE-EEEECSSCCSSSCCCEEEECSSS-CEEEECCTTSCEEEEETTTCCEEEE
T ss_pred             cCCCeEEEEECCCCcE-EEEEEecCCceEEEEEEEEeCCC-cEEEEECCCCEEEEEECCCchhhhh
Confidence            9999999999988765 456777765432  23344 555 8999999999999999999886654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.5e-36  Score=294.94  Aligned_cols=284  Identities=23%  Similarity=0.413  Sum_probs=234.5

Q ss_pred             EeecCCccCCc-ceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390           43 TVEHHGEETPP-LAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        43 ~~~~~gh~~~v-~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      ...+.||.+.| .++     +++|++|++|+.||.|++||+.++.             .+..+.+|.+.|.+++|+  +.
T Consensus       111 ~~~l~~h~~~v~~~~-----~~~g~~l~sg~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~~~~~--~~  170 (445)
T 2ovr_B          111 PKVLKGHDDHVITCL-----QFCGNRIVSGSDDNTLKVWSAVTGK-------------CLRTLVGHTGGVWSSQMR--DN  170 (445)
T ss_dssp             CEEEECSTTSCEEEE-----EEETTEEEEEETTSCEEEEETTTCC-------------EEEECCCCSSCEEEEEEE--TT
T ss_pred             eEEecccCCCcEEEE-----EEcCCEEEEEECCCcEEEEECCCCc-------------EEEEEcCCCCCEEEEEec--CC
Confidence            35678999876 444     3478999999999999999998764             367788999999999997  67


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      +|++|+.||+|++||+.+++.+..+.+|...|.++.|++   ..+++|+.||.|++||+++++..               
T Consensus       171 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~---------------  232 (445)
T 2ovr_B          171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL---------------  232 (445)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE---------------
T ss_pred             EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE---------------
Confidence            999999999999999999999999999999999999963   68999999999999999865422               


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                  ..+..|...+.++.+  ++..+++ |+.||.|++||+++++...           ....|...|.++.
T Consensus       233 ------------~~~~~~~~~v~~~~~--~~~~l~~-~~~dg~i~iwd~~~~~~~~-----------~~~~~~~~v~~~~  286 (445)
T 2ovr_B          233 ------------HVLMGHVAAVRCVQY--DGRRVVS-GAYDFMVKVWDPETETCLH-----------TLQGHTNRVYSLQ  286 (445)
T ss_dssp             ------------EEEECCSSCEEEEEE--CSSCEEE-EETTSCEEEEEGGGTEEEE-----------EECCCSSCEEEEE
T ss_pred             ------------EEEcCCcccEEEEEE--CCCEEEE-EcCCCEEEEEECCCCcEeE-----------EecCCCCceEEEE
Confidence                        244567889999998  6677776 5589999999999877655           3556778899999


Q ss_pred             eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc
Q 010390          282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS  361 (512)
Q Consensus       282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~  361 (512)
                      +  ++.++++++.||.|++||+.+.  ..+..+.++.  ..+.++.+  ++++|++|+.||.|++||+.+++. ...+.+
T Consensus       287 ~--~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~  357 (445)
T 2ovr_B          287 F--DGIHVVSGSLDTSIRVWDVETG--NCIHTLTGHQ--SLTSGMEL--KDNILVSGNADSTVKIWDIKTGQC-LQTLQG  357 (445)
T ss_dssp             E--CSSEEEEEETTSCEEEEETTTC--CEEEEECCCC--SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE-EEEECS
T ss_pred             E--CCCEEEEEeCCCeEEEEECCCC--CEEEEEcCCc--ccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcE-EEEEcc
Confidence            9  7889999999999999999763  3445555443  33444554  578999999999999999988765 355554


Q ss_pred             ---ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          362 ---HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       362 ---h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                         |...|++++|++   .+|++|+.||.|++||+.+++.+..+
T Consensus       358 ~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          358 PNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             TTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceeeee
Confidence               888999999963   79999999999999999999877654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6e-37  Score=283.59  Aligned_cols=253  Identities=19%  Similarity=0.284  Sum_probs=208.2

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      +.....+.||...|.+++|   +|+|++|++|+.||.|+|||+.+++             .+..+.+|...|.+++|+|+
T Consensus        55 ~~~~~~~~~h~~~v~~~~~---s~dg~~l~s~s~D~~v~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~  118 (319)
T 3frx_A           55 GVPVRSFKGHSHIVQDCTL---TADGAYALSASWDKTLRLWDVATGE-------------TYQRFVGHKSDVMSVDIDKK  118 (319)
T ss_dssp             EEEEEEEECCSSCEEEEEE---CTTSSEEEEEETTSEEEEEETTTTE-------------EEEEEECCSSCEEEEEECTT
T ss_pred             cccceEEeCCcccEEEEEE---CCCCCEEEEEeCCCEEEEEECCCCC-------------eeEEEccCCCcEEEEEEcCC
Confidence            4456678899999999999   9999999999999999999998763             36778899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCC-----CCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN-----SDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      +.+|++|+.|++|++||+. ++++..+.+|...|.++.|.|..     ...|++++.|+.|++||+++.+.         
T Consensus       119 ~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---------  188 (319)
T 3frx_A          119 ASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI---------  188 (319)
T ss_dssp             SCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE---------
T ss_pred             CCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh---------
Confidence            9999999999999999986 56777888999999999999853     24899999999999999975431         


Q ss_pred             eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL  274 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  274 (512)
                                        ...+.+|...|.+++|+|++..++++ +.||.|++||+.+.+.....            .+.
T Consensus       189 ------------------~~~~~~h~~~v~~~~~sp~g~~l~s~-~~dg~i~iwd~~~~~~~~~~------------~~~  237 (319)
T 3frx_A          189 ------------------EADFIGHNSNINTLTASPDGTLIASA-GKDGEIMLWNLAAKKAMYTL------------SAQ  237 (319)
T ss_dssp             ------------------EEEECCCCSCEEEEEECTTSSEEEEE-ETTCEEEEEETTTTEEEEEE------------ECC
T ss_pred             ------------------heeecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEe------------cCC
Confidence                              22455788999999999999998874 48999999999988765432            223


Q ss_pred             cCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee------ceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          275 HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG------CRIESFYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       275 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                      ..|.+++|+|++.+|++++. +.+++|++....  ....+..      ......+.+++|+|+|++|++|+.||.|++||
T Consensus       238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQY--LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             SCEEEEEECSSSSEEEEEET-TEEEEEEETTEE--EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCe--eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            57999999999999988865 569999985421  1222211      11234577899999999999999999999999


Q ss_pred             cCCC
Q 010390          349 VNKP  352 (512)
Q Consensus       349 ~~~~  352 (512)
                      +.+.
T Consensus       315 ~~t~  318 (319)
T 3frx_A          315 VMTA  318 (319)
T ss_dssp             EEEC
T ss_pred             Eeec
Confidence            8653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-36  Score=283.63  Aligned_cols=296  Identities=17%  Similarity=0.217  Sum_probs=223.1

Q ss_pred             cceeccccCCCcEEEEEE-----ec-CCCEEEEEeCCCcEEEEeCCCC-------eeeecccCcCCCEEEEEeeCCCCCe
Q 010390           99 ARISDWVAHQNAIFDLCW-----IK-EDTNILTASGDQTIKIWDAEKK-------KCTGALMGHTGSIKSLCSHPTNSDI  165 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~-----s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~  165 (512)
                      .....+.+|.+.|++++|     ++ ++++|++|+.|++|+|||+.+.       .+...+.+|...|.+++|+|++ .+
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~   90 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CF   90 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CE
Confidence            346678999999999999     76 8999999999999999998753       4566788999999999999988 89


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeE
Q 010390          166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIV  245 (512)
Q Consensus       166 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i  245 (512)
                      +++++.|++|++||+++++.                           ...+.+|...|.+++|+|++..+++++ .|+.|
T Consensus        91 l~s~s~D~~v~lwd~~~~~~---------------------------~~~~~~h~~~v~~v~~sp~~~~l~s~~-~d~~i  142 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGTT---------------------------YKRFVGHQSEVYSVAFSPDNRQILSAG-AEREI  142 (343)
T ss_dssp             EEEEETTSEEEEEETTSSCE---------------------------EEEEECCCSCEEEEEECSSTTEEEEEE-TTSCE
T ss_pred             EEEEcCCCcEEEEECCCCcE---------------------------EEEEcCCCCcEEEEEECCCCCEEEEEc-CCCEE
Confidence            99999999999999986542                           224567889999999999999988754 89999


Q ss_pred             EEEeccCccceecccCCCccccccccccccCeeEEEeCCCC----------CEEEEEecCCeEEEEEcccCCCCceEeee
Q 010390          246 KFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG----------VFLTASCMDHRIYLYNVLQLDKGPIQHFS  315 (512)
Q Consensus       246 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  315 (512)
                      ++||+.........         ....|...|.+++|+|++          .+|++++.||.|++||..   ......+.
T Consensus       143 ~~wd~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~  210 (343)
T 2xzm_R          143 KLWNILGECKFSSA---------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN---FQIRYTFK  210 (343)
T ss_dssp             EEEESSSCEEEECC---------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT---TEEEEEEE
T ss_pred             EEEeccCCceeeee---------cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC---CceeEEEc
Confidence            99999743322111         234677789999999987          799999999999999942   23344444


Q ss_pred             eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          316 GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       316 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      +|  ...+.+++|+|++++|++|+.||.|++||+.........+ .+...|.+++|+|++ .+++ ++.|+.|++||+.+
T Consensus       211 ~h--~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~~la-~~~d~~v~iw~~~~  285 (343)
T 2xzm_R          211 AH--ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKL-QWVA-VGTDQGVKIFNLMT  285 (343)
T ss_dssp             CC--SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSS-CEEE-EEESSCEEEEESSS
T ss_pred             Cc--cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCC-CEEE-EECCCCEEEEEeCC
Confidence            44  3568899999999999999999999999996554433333 355679999999998 6665 55688899999988


Q ss_pred             CcccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390          396 SRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD  452 (512)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  452 (512)
                      ++.........          .+.... .....+...+. .++|+|++++++.++..
T Consensus       286 ~~~~~~~~~~~----------~~~~~~-~~~~~~~~~v~-~~~~sp~g~~l~sg~~D  330 (343)
T 2xzm_R          286 QSKAPVCTIEA----------EPITKA-EGQKGKNPQCT-SLAWNALGKKLFAGFTD  330 (343)
T ss_dssp             CCSCSEEECCC----------CSGGGB-TTBCCSCCCEE-EEEECSSSCCEEEEETT
T ss_pred             CCCCceEEeec----------Ccchhh-hhhcCCCCceE-EEEECCCCCeEEEecCC
Confidence            77554211100          000000 00011111223 67899999988877443

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=288.07  Aligned_cols=298  Identities=13%  Similarity=0.171  Sum_probs=232.7

Q ss_pred             eeEeecCCccCCcceEEEEEecCC---CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKN---SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI  117 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~---~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  117 (512)
                      ..+..+.+|.+.|.+|+|   +|+   |++||+|+.||.|+|||+.+...           .....+.+|.+.|++++|+
T Consensus        30 ~~~~~~~~h~~~v~~~~~---~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~h~~~v~~~~~~   95 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSF---SPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------TIPKAQQMHTGPVLDVCWS   95 (368)
T ss_dssp             CCEECSSCCSSCEEEEEE---CCTTSSSEEEEEEETTSEEEEEEECTTSC-----------EEEEEEEECSSCEEEEEEC
T ss_pred             ceeEeccCCCCceEEEEE---cCCCCCceEEEEECCCCcEEEEEcCCCCc-----------eeEEEeccccCCEEEEEEC
Confidence            445678899999999999   898   69999999999999999976321           2236678899999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEe--eCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          118 KEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCS--HPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       118 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      |++++|++++.||.|++||+.+++.+. +..|...|.+++|  ++++ .+|++++.||.|++||+++++.....      
T Consensus        96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~------  167 (368)
T 3mmy_A           96 DDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVL------  167 (368)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEE------
T ss_pred             cCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEE------
Confidence            999999999999999999999998776 5569999999999  7776 89999999999999999876543321      


Q ss_pred             eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                           . ....+.++.+.+  ..+++ ++.++.+.+|+++.........         ......
T Consensus       168 ---------------------~-~~~~~~~~~~~~--~~~~~-~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~  213 (368)
T 3mmy_A          168 ---------------------Q-LPERCYCADVIY--PMAVV-ATAERGLIVYQLENQPSEFRRI---------ESPLKH  213 (368)
T ss_dssp             ---------------------E-CSSCEEEEEEET--TEEEE-EEGGGCEEEEECSSSCEEEEEC---------CCSCSS
T ss_pred             ---------------------e-cCCCceEEEecC--CeeEE-EeCCCcEEEEEeccccchhhhc---------cccccC
Confidence                                 1 122455555553  45555 4479999999998765543321         122233


Q ss_pred             CeeEEEeCCCCCE----EEEEecCCeEEEEEcccCCC-CceEeeeeceec----------eeEEEEEECCCCCEEEEecC
Q 010390          276 GISSLSQDSNGVF----LTASCMDHRIYLYNVLQLDK-GPIQHFSGCRIE----------SFYVKSEICPNASHILSGSS  340 (512)
Q Consensus       276 ~i~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~----------~~~~~~~~s~~~~~l~~g~~  340 (512)
                      .+.++.+.++...    +++++.||.|++||+..... .....+..+...          ..+.+++|+|++++|++|+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~  293 (368)
T 3mmy_A          214 QHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS  293 (368)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET
T ss_pred             CCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc
Confidence            4555555544433    99999999999999976533 344455554321          15889999999999999999


Q ss_pred             CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       341 dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      ||.|++||+.+++. ...+.+|...|++++|+|++ .+|++++.|+..+.|++.+.
T Consensus       294 dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g-~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          294 DGRFSFWDKDARTK-LKTSEQLDQPISACCFNHNG-NIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             TSCEEEEETTTTEE-EEECCCCSSCEEEEEECTTS-SCEEEEECCCSTTCGGGCCT
T ss_pred             CCeEEEEECCCCcE-EEEecCCCCCceEEEECCCC-CeEEEEecccccccccccCC
Confidence            99999999998766 46778999999999999999 89999999986666665443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.2e-37  Score=286.13  Aligned_cols=259  Identities=15%  Similarity=0.258  Sum_probs=199.6

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CC
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--ED  120 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~  120 (512)
                      ...+.||.++|.+|+|   +|+|++||+|+.|+.|+|||+.++..           ..+..+.+|.+.|++++|++  ++
T Consensus         6 ~~~~~~H~~~V~~v~~---s~~g~~lasgs~D~~v~lwd~~~~~~-----------~~~~~l~gH~~~V~~v~~~~~~~~   71 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQM---DYYGTRLATCSSDRSVKIFDVRNGGQ-----------ILIADLRGHEGPVWQVAWAHPMYG   71 (316)
T ss_dssp             --------CCEEEEEE---CGGGCEEEEEETTTEEEEEEEETTEE-----------EEEEEEECCSSCEEEEEECCGGGS
T ss_pred             eeecccccCeEEEeeE---cCCCCEEEEEeCCCeEEEEEecCCCc-----------EEEEEEcCCCccEEEEEeCCCCCC
Confidence            3456799999999999   99999999999999999999875421           23567889999999999986  48


Q ss_pred             CEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          121 TNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      ++|++|+.|++|+|||+++++  ....+.+|...|++++|+|++ +.+|++|+.|+.|++||++.....           
T Consensus        72 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~-----------  140 (316)
T 3bg1_A           72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW-----------  140 (316)
T ss_dssp             SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-----------
T ss_pred             CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-----------
Confidence            999999999999999998873  566788899999999999973 379999999999999998754210           


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecC-----------------CEEEEEeecCCeEEEEeccCccceeccc
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE-----------------VSIATASAVNSIVKFWDTRNLKAQITQA  260 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~l~~~g~~dg~i~iwd~~~~~~~~~~~  260 (512)
                                   ........|...+.+++|+|+.                 ..++ +|+.|+.|++||++........ 
T Consensus       141 -------------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~-  205 (316)
T 3bg1_A          141 -------------EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEE-  205 (316)
T ss_dssp             -------------EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEE-
T ss_pred             -------------ceeeeeccccCCcceEEEccccCCccccccccccCccccceEE-EecCCCeEEEEEeCCCCcccee-
Confidence                         0011334677788899998873                 4455 4678999999999754211100 


Q ss_pred             CCCccccccccccccCeeEEEeCCCC----CEEEEEecCCeEEEEEcccCCCC--ceEeeeeceeceeEEEEEECCCCCE
Q 010390          261 WPHAESSSAKETRLHGISSLSQDSNG----VFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRIESFYVKSEICPNASH  334 (512)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~  334 (512)
                             ..+..|...|.+++|+|++    .+|++++.|++|++||+......  ....+..+  ...+.+++|+|++++
T Consensus       206 -------~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~  276 (316)
T 3bg1_A          206 -------QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANI  276 (316)
T ss_dssp             -------ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCC
T ss_pred             -------eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCE
Confidence                   0466788899999999986    89999999999999998753211  11223333  456889999999999


Q ss_pred             EEEecCCCCEEEEecC
Q 010390          335 ILSGSSDGNAYVWQVN  350 (512)
Q Consensus       335 l~~g~~dg~i~iw~~~  350 (512)
                      |++++.|+.|++|+..
T Consensus       277 las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          277 LAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEESSSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEEEC
Confidence            9999999999999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=282.41  Aligned_cols=264  Identities=17%  Similarity=0.241  Sum_probs=202.0

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC--eeeecc-cC-cCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--KCTGAL-MG-HTGSIKSLCSHPTNSDILVSGSRDGS  174 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~-~~-h~~~v~~l~~~~~~~~~l~s~~~dg~  174 (512)
                      ..+..+.+|.+.|++++|+|+  +|++|+.|++|++||+.++  +....+ .+ |...|.+++|+|++ .+|++++.|++
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~   81 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDST   81 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSC
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCc
Confidence            346778899999999999987  9999999999999999875  445555 34 99999999999988 89999999999


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      |++||+........                    .......+.+|...|.+++|+|++..+++ |+.|+.|++||++...
T Consensus        82 v~iw~~~~~~~~~~--------------------~~~~~~~~~~h~~~V~~v~~sp~g~~las-~s~D~~v~iwd~~~~~  140 (330)
T 2hes_X           82 VSIWAKEESADRTF--------------------EMDLLAIIEGHENEVKGVAWSNDGYYLAT-CSRDKSVWIWETDESG  140 (330)
T ss_dssp             EEEEEC-------C--------------------CCEEEEEEC----CEEEEEECTTSCEEEE-EETTSCEEEEECCTTC
T ss_pred             EEEEEcccCcCccc--------------------cceeEEEEcCCCCcEEEEEECCCCCEEEE-EeCCCEEEEEeccCCC
Confidence            99999864321000                    01123356688999999999999998887 4589999999995432


Q ss_pred             ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC--C
Q 010390          255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN--A  332 (512)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~  332 (512)
                      .....       ...+..|...|.+++|+|++.+|++++.|+.|++||........+..+.+|.  ..+.+++|+|+  +
T Consensus       141 ~~~~~-------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~  211 (330)
T 2hes_X          141 EEYEC-------ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE--GTVWSSDFDKTEGV  211 (330)
T ss_dssp             CCCEE-------EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCSSSS
T ss_pred             CCeEE-------EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC--CcEEEEEecCCCCe
Confidence            11000       0035678889999999999999999999999999998654334455555553  56888999998  7


Q ss_pred             CEEEEecCCCCEEEEecCCCCC-------CCceecc-ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          333 SHILSGSSDGNAYVWQVNKPQA-------DPIKLKS-HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       333 ~~l~~g~~dg~i~iw~~~~~~~-------~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      .+|++|+.|++|++||+.....       ....+.+ |...|++++|++++  +|++++.||.|++||..+++
T Consensus       212 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTE
T ss_pred             eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc
Confidence            7899999999999999875421       1122333 89999999999754  89999999999999987664

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.9e-36  Score=293.17  Aligned_cols=284  Identities=19%  Similarity=0.333  Sum_probs=229.1

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT  125 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  125 (512)
                      ..+|...|.++++     ++++|++|+.||.|++||+.+++.             +..+.+|.+.|.+++|  ++++|++
T Consensus       129 ~~~~~~~v~~~~~-----d~~~l~~g~~dg~i~iwd~~~~~~-------------~~~~~~h~~~v~~l~~--~~~~l~s  188 (435)
T 1p22_A          129 RSETSKGVYCLQY-----DDQKIVSGLRDNTIKIWDKNTLEC-------------KRILTGHTGSVLCLQY--DERVIIT  188 (435)
T ss_dssp             CCSSCCCEEEEEC-----CSSEEEEEESSSCEEEEESSSCCE-------------EEEECCCSSCEEEEEC--CSSEEEE
T ss_pred             ccCCCCcEEEEEE-----CCCEEEEEeCCCeEEEEeCCCCeE-------------EEEEcCCCCcEEEEEE--CCCEEEE
Confidence            3456677777765     899999999999999999977643             6778899999999999  7889999


Q ss_pred             EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       126 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      |+.||+|++||+.+++.+..+.+|...|.+++|++   ..+++|+.||.|++||++++....                  
T Consensus       189 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~------------------  247 (435)
T 1p22_A          189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDIT------------------  247 (435)
T ss_dssp             EETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCE------------------
T ss_pred             EcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCce------------------
Confidence            99999999999999999999999999999999974   689999999999999998765321                  


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                            ......+|...|.++.|  ++..+++ |+.||.|++||+++++...           ....|...|.++.+  +
T Consensus       248 ------~~~~~~~~~~~v~~~~~--~~~~l~s-~~~dg~i~vwd~~~~~~~~-----------~~~~~~~~v~~~~~--~  305 (435)
T 1p22_A          248 ------LRRVLVGHRAAVNVVDF--DDKYIVS-ASGDRTIKVWNTSTCEFVR-----------TLNGHKRGIACLQY--R  305 (435)
T ss_dssp             ------EEEEECCCSSCEEEEEE--ETTEEEE-EETTSEEEEEETTTCCEEE-----------EEECCSSCEEEEEE--E
T ss_pred             ------eeeEecCCCCcEEEEEe--CCCEEEE-EeCCCeEEEEECCcCcEEE-----------EEcCCCCcEEEEEe--C
Confidence                  11244577889999999  6677776 5589999999999887665           35667788999999  4


Q ss_pred             CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC--------CCc
Q 010390          286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA--------DPI  357 (512)
Q Consensus       286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~--------~~~  357 (512)
                      +.++++|+.||.|++||+++.  ..+..+.++.  ..+.+++|  ++++|++|+.||.|++||+.+...        ...
T Consensus       306 ~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~--~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  379 (435)
T 1p22_A          306 DRLVVSGSSDNTIRLWDIECG--ACLRVLEGHE--ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR  379 (435)
T ss_dssp             TTEEEEEETTSCEEEEETTTC--CEEEEECCCS--SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCC--CEEEEEeCCc--CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchhee
Confidence            679999999999999999763  3455555543  45777777  789999999999999999976541        245


Q ss_pred             eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      .+.+|.+.|++++|  ++ .+|++++.||.|++||+.+......
T Consensus       380 ~~~~h~~~v~~l~~--~~-~~l~s~s~Dg~i~iwd~~~~~~~~~  420 (435)
T 1p22_A          380 TLVEHSGRVFRLQF--DE-FQIVSSSHDDTILIWDFLNDPAAQA  420 (435)
T ss_dssp             EECCCSSCCCCEEE--CS-SCEEECCSSSEEEEEC---------
T ss_pred             eccCCCCCeEEEEe--CC-CEEEEEeCCCEEEEEECCCCCCccc
Confidence            67899999999999  55 7899999999999999998775554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.8e-36  Score=305.89  Aligned_cols=330  Identities=15%  Similarity=0.158  Sum_probs=238.7

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC---cEEEEEE
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN---AIFDLCW  116 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~  116 (512)
                      .....+.+|.+.|.+++|   +|+++ +|++|+.||.|++||..+.             ..+..+.+|..   .|++++|
T Consensus       151 ~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~d~~v~vwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~  214 (615)
T 1pgu_A          151 NSLGEVSGHSQRINACHL---KQSRPMRSMTVGDDGSVVFYQGPPF-------------KFSASDRTHHKQGSFVRDVEF  214 (615)
T ss_dssp             CEEEECCSCSSCEEEEEE---CSSSSCEEEEEETTTEEEEEETTTB-------------EEEEEECSSSCTTCCEEEEEE
T ss_pred             CcceeeecCCccEEEEEE---CCCCCcEEEEEeCCCcEEEEeCCCc-------------ceeeeecccCCCCceEEEEEE
Confidence            345667889999999999   99998 8999999999999998665             33677888999   9999999


Q ss_pred             ecC-CCEEEEEeCCCcEEEEeCCCCeeeecc-c---CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          117 IKE-DTNILTASGDQTIKIWDAEKKKCTGAL-M---GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       117 s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      +|+ +++|++++.||.|++||+.+++.+..+ .   .|...|.+++|+ ++ .+|++++.|+.|++||+++++.......
T Consensus       215 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             CSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            999 999999999999999999999999888 6   899999999999 66 8999999999999999987654433221


Q ss_pred             c-----ceeeeccccccccc-------------ccccccceec---------------------------------cccc
Q 010390          192 E-----SFVFSSAVVKGAHL-------------LSQSKRVSRR---------------------------------KAAS  220 (512)
Q Consensus       192 ~-----~~~~~~~~~~~~~~-------------~~~~~~~~~~---------------------------------~~~~  220 (512)
                      .     .......+..+..+             .........+                                 ..|.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~  372 (615)
T 1pgu_A          293 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHS  372 (615)
T ss_dssp             CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCC
T ss_pred             CCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCccc
Confidence            1     00000000000000             0000111111                                 2344


Q ss_pred             ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc----------------------------------eeccc------
Q 010390          221 MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA----------------------------------QITQA------  260 (512)
Q Consensus       221 ~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~----------------------------------~~~~~------  260 (512)
                      ..|.+++| +++..+++ ++.|+.|++||+.+.+.                                  .....      
T Consensus       373 ~~v~~~~~-~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (615)
T 1pgu_A          373 NLIVSLDN-SKAQEYSS-ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS  450 (615)
T ss_dssp             SCEEEEEC-CSTTCCEE-EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred             CceEEEEE-CCCcEEEE-EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence            44455555 33444443 23455555555543210                                  00000      


Q ss_pred             -------------C-CC---------cccc-ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee
Q 010390          261 -------------W-PH---------AESS-SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG  316 (512)
Q Consensus       261 -------------~-~~---------~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  316 (512)
                                   . ..         .... .....|...|.+++|+|++++|++++.||.|++||+.+.  ..+..+.+
T Consensus       451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~  528 (615)
T 1pgu_A          451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR--EVKTSRWA  528 (615)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEECCSC
T ss_pred             EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC--cceeEeec
Confidence                         0 00         0000 135567788999999999999999999999999999653  23333333


Q ss_pred             ceeceeEEEEEECC----------CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390          317 CRIESFYVKSEICP----------NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY  386 (512)
Q Consensus       317 ~~~~~~~~~~~~s~----------~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg  386 (512)
                      . +...+.+++|+|          ++++|++|+.||.|++||+.+.......+.+|...|++++|+|++ . |++++.||
T Consensus       529 ~-h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~-l~s~~~d~  605 (615)
T 1pgu_A          529 F-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-T-LVSSGADA  605 (615)
T ss_dssp             C-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-E-EEEEETTS
T ss_pred             C-CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC-C-eEEecCCc
Confidence            0 345688999999          999999999999999999998755567788999999999999999 6 99999999


Q ss_pred             cEEEEeCCC
Q 010390          387 TVRLWSLEN  395 (512)
Q Consensus       387 ~i~vwd~~~  395 (512)
                      .|++|+++.
T Consensus       606 ~v~iw~~~~  614 (615)
T 1pgu_A          606 CIKRWNVVL  614 (615)
T ss_dssp             CEEEEEEC-
T ss_pred             eEEEEeeec
Confidence            999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-37  Score=318.57  Aligned_cols=227  Identities=13%  Similarity=0.222  Sum_probs=175.1

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      .....||.+.|.+|+|   +|++++||+|+.||.|+|||..+.+.             ... ..|...|.+++|+| +++
T Consensus        10 ~~~~~gh~~~V~~laf---spdg~~lAsgs~Dg~I~lw~~~~~~~-------------~~~-~~~~~~V~~l~fsp-g~~   71 (902)
T 2oaj_A           10 ETNKYGMSSKPIAAAF---DFTQNLLAIATVTGEVHIYGQQQVEV-------------VIK-LEDRSAIKEMRFVK-GIY   71 (902)
T ss_dssp             EEEEEECSSCEEEEEE---ETTTTEEEEEETTSEEEEECSTTCEE-------------EEE-CSSCCCEEEEEEET-TTE
T ss_pred             cccccCCCCCcEEEEE---CCCCCEEEEEeCCCEEEEEeCCCcEE-------------EEE-cCCCCCEEEEEEcC-CCE
Confidence            3445689999999999   99999999999999999999865421             222 34788999999999 889


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      |++++.|++|+|||+.+++++..+. |...|++++|+|++ ++|++|+.||.|++||++++....      +..     .
T Consensus        72 L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~------~~i-----~  138 (902)
T 2oaj_A           72 LVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSS------FKL-----D  138 (902)
T ss_dssp             EEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEE------EEE-----C
T ss_pred             EEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcccc------cee-----c
Confidence            9999999999999999999888886 67899999999988 999999999999999998654210      000     0


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc--c-----ccccccccc
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE--S-----SSAKETRLH  275 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--~-----~~~~~~~~~  275 (512)
                           ..........+|...|.+++|+|++..++++|+.||.| +||+++.+...........  .     ......|..
T Consensus       139 -----~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~  212 (902)
T 2oaj_A          139 -----NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP  212 (902)
T ss_dssp             -----CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred             -----cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence                 00000012357888999999999765555567789999 9999988765443211000  0     001234557


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccC
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQL  306 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  306 (512)
                      .|.+++|+|+|.+|++++.||.|++||+++.
T Consensus       213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            7999999999999999999999999998653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.5e-37  Score=284.76  Aligned_cols=255  Identities=19%  Similarity=0.257  Sum_probs=200.8

Q ss_pred             ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCC-CCCeEEEEeCCCcEEEEe
Q 010390          103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPT-NSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd  179 (512)
                      .+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++  .+..+.+|.+.|++++|++. ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999999999999999999999999998774  46778999999999999863 238999999999999999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCcccee
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                      ++++...                         ....+.+|...|.+++|+|+  +..+++ |+.|+.|++||++......
T Consensus        88 ~~~~~~~-------------------------~~~~~~~h~~~V~~v~~~p~~~g~~las-gs~D~~i~lwd~~~~~~~~  141 (316)
T 3bg1_A           88 EENGTWE-------------------------KSHEHAGHDSSVNSVCWAPHDYGLILAC-GSSDGAISLLTYTGEGQWE  141 (316)
T ss_dssp             CSSSCCC-------------------------EEEEECCCSSCCCEEEECCTTTCSCEEE-ECSSSCEEEEEECSSSCEE
T ss_pred             CCCCcce-------------------------EEEEccCCCCceEEEEECCCCCCcEEEE-EcCCCCEEEEecCCCCCcc
Confidence            9864321                         11234578889999999998  556665 6689999999998753211


Q ss_pred             cccCCCccccccccccccCeeEEEeCCC-----------------CCEEEEEecCCeEEEEEcccCCC-CceEeeeecee
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSN-----------------GVFLTASCMDHRIYLYNVLQLDK-GPIQHFSGCRI  319 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~  319 (512)
                      ..        .....|...+.+++|+|+                 +.+|++++.|+.|++||+..... .....+.+|  
T Consensus       142 ~~--------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--  211 (316)
T 3bg1_A          142 VK--------KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--  211 (316)
T ss_dssp             EC--------CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--
T ss_pred             ee--------eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--
Confidence            00        035567788999999987                 47899999999999999854221 234444444  


Q ss_pred             ceeEEEEEECCCC----CEEEEecCCCCEEEEecCCCC---CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          320 ESFYVKSEICPNA----SHILSGSSDGNAYVWQVNKPQ---ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       320 ~~~~~~~~~s~~~----~~l~~g~~dg~i~iw~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      ...+.+++|+|++    ++|++|+.|++|++|++.+..   .....+..|...|.+++|+|++ .+|++++.||.|++|+
T Consensus       212 ~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          212 SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWK  290 (316)
T ss_dssp             SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEE
T ss_pred             CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEE
Confidence            3568899999986    889999999999999997632   2234567789999999999999 8999999999999999


Q ss_pred             CC
Q 010390          393 LE  394 (512)
Q Consensus       393 ~~  394 (512)
                      ..
T Consensus       291 ~~  292 (316)
T 3bg1_A          291 ES  292 (316)
T ss_dssp             EC
T ss_pred             EC
Confidence            76

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-36  Score=296.42  Aligned_cols=314  Identities=15%  Similarity=0.251  Sum_probs=226.8

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC------------CcEEEEE
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ------------NAIFDLC  115 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V~~l~  115 (512)
                      .|.+.|.+|+|   +|+|++||+|+.||.|+|||+.+......  ....+......+.+|.            +.|++++
T Consensus        26 ~~~~~V~~v~~---s~~g~~la~g~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           26 AEADIISTVEF---NHSGELLATGDKGGRVVIFQQEQENKIQS--HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             CGGGSEEEEEE---CSSSSEEEEEETTSEEEEEEECC-----C--CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             cccCcEEEEEE---CCCCCEEEEEcCCCeEEEEEecCCCCCCc--ccccceeEecccccccccccccccccccCceEEEE
Confidence            36788999999   99999999999999999999986542100  0011223466788998            8899999


Q ss_pred             EecCC--CEEEEEeCCCcEEEEeCCCCeee---------------------------------------ec-ccCcCCCE
Q 010390          116 WIKED--TNILTASGDQTIKIWDAEKKKCT---------------------------------------GA-LMGHTGSI  153 (512)
Q Consensus       116 ~s~~~--~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~h~~~v  153 (512)
                      |+|++  .+|++++.|++|++||+.+++..                                       .. ..+|...|
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            99998  79999999999999998765432                                       12 36799999


Q ss_pred             EEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecC-
Q 010390          154 KSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE-  232 (512)
Q Consensus       154 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  232 (512)
                      ++++|+|++ .+|++| .|+.|++||++........                   .......+..|...|.+++|+|++ 
T Consensus       181 ~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~~~~~p~~~  239 (447)
T 3dw8_B          181 NSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNI-------------------VDIKPANMEELTEVITAAEFHPNSC  239 (447)
T ss_dssp             CEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEE-------------------EECCCSSGGGCCCCEEEEEECSSCT
T ss_pred             EEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeee-------------------eecccccccccCcceEEEEECCCCC
Confidence            999999987 899998 7999999999732210000                   000011355788899999999998 


Q ss_pred             CEEEEEeecCCeEEEEeccCccc----eecccCCC-ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC
Q 010390          233 VSIATASAVNSIVKFWDTRNLKA----QITQAWPH-AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD  307 (512)
Q Consensus       233 ~~l~~~g~~dg~i~iwd~~~~~~----~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  307 (512)
                      ..+++ |+.||.|++||+++++.    ........ .........|...|.+++|+|++++|++++. +.|++||++.. 
T Consensus       240 ~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~-  316 (447)
T 3dw8_B          240 NTFVY-SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME-  316 (447)
T ss_dssp             TEEEE-EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC-
T ss_pred             cEEEE-EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC-
Confidence            66665 66899999999998775    22111000 0000112233348999999999999999998 99999999752 


Q ss_pred             CCceEeeeeceece-------------eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec--------------
Q 010390          308 KGPIQHFSGCRIES-------------FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK--------------  360 (512)
Q Consensus       308 ~~~~~~~~~~~~~~-------------~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~--------------  360 (512)
                      ...+..+..+....             .+..++|+|++++|++|+.||.|++||+.+++..  .+.              
T Consensus       317 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~~~  394 (447)
T 3dw8_B          317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI--TLEASRENNKPRTVLKP  394 (447)
T ss_dssp             SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE--EEECCSTTCCTTCBCCC
T ss_pred             ccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce--eeeecccccccccccCC
Confidence            23444454443111             0234899999999999999999999999876542  221              


Q ss_pred             -------------------cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          361 -------------------SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       361 -------------------~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                                         .+...|..++|+|++ .+|++++.++ +++|.-.
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~-~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          395 RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKE-NIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSS-SEEEEECSSC-EEEEECC
T ss_pred             ccccccCCcccccccccccccCCceeEEEECCCC-CEEEEEecce-eeeeccc
Confidence                               234578999999999 8999988876 7787643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.9e-36  Score=287.53  Aligned_cols=252  Identities=17%  Similarity=0.326  Sum_probs=204.9

Q ss_pred             ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCC------------------CEEEEEeeCCCCCeE
Q 010390          105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTG------------------SIKSLCSHPTNSDIL  166 (512)
Q Consensus       105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~------------------~v~~l~~~~~~~~~l  166 (512)
                      .+|.+.|++++|+|+|++|++|+ ++.++||++.+++.+..+..|..                  .|.+++|+|++ .+|
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg-~~l  138 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFL  138 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS-SEE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC-CEE
Confidence            36999999999999999999976 68899999999988877765432                  49999999988 899


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEE
Q 010390          167 VSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVK  246 (512)
Q Consensus       167 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~  246 (512)
                      ++|+.|+.|++||+.+++.                           ...+.+|...|.+++|+|++..+++ ++.|+.|+
T Consensus       139 ~s~~~d~~i~iwd~~~~~~---------------------------~~~~~~h~~~v~~~~~~p~~~~l~s-~s~d~~v~  190 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKI---------------------------VMILQGHEQDIYSLDYFPSGDKLVS-GSGDRTVR  190 (393)
T ss_dssp             EEEETTSCEEEEETTTTEE---------------------------EEEECCCSSCEEEEEECTTSSEEEE-EETTSEEE
T ss_pred             EEEcCCCeEEEEECCCCcE---------------------------EEEEccCCCCEEEEEEcCCCCEEEE-ecCCCcEE
Confidence            9999999999999975432                           2245678899999999999999887 55899999


Q ss_pred             EEeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeee-----ceec
Q 010390          247 FWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-----CRIE  320 (512)
Q Consensus       247 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~  320 (512)
                      +||+++++....            ..+...+.+++++| ++.+|++++.|+.|++||+....  .+..+..     ..+.
T Consensus       191 iwd~~~~~~~~~------------~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~  256 (393)
T 1erj_A          191 IWDLRTGQCSLT------------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHK  256 (393)
T ss_dssp             EEETTTTEEEEE------------EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCS
T ss_pred             EEECCCCeeEEE------------EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc--EEEeecccccCCCCCC
Confidence            999998776542            22345699999999 89999999999999999987633  2222211     1234


Q ss_pred             eeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC-----------CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390          321 SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA-----------DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVR  389 (512)
Q Consensus       321 ~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~-----------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~  389 (512)
                      ..+.+++|+|++++|++|+.|+.|++||+.+...           ....+.+|...|.+++|+|++ .+|++|+.|+.|+
T Consensus       257 ~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~  335 (393)
T 1erj_A          257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVL  335 (393)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEE
Confidence            5688999999999999999999999999976432           123567899999999999999 8999999999999


Q ss_pred             EEeCCCCccccc
Q 010390          390 LWSLENSRCSSM  401 (512)
Q Consensus       390 vwd~~~~~~~~~  401 (512)
                      +||+.+++.+..
T Consensus       336 iwd~~~~~~~~~  347 (393)
T 1erj_A          336 FWDKKSGNPLLM  347 (393)
T ss_dssp             EEETTTCCEEEE
T ss_pred             EEECCCCeEEEE
Confidence            999999887654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-36  Score=315.03  Aligned_cols=358  Identities=11%  Similarity=0.043  Sum_probs=245.4

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccce-eccccCCCcEEEEEEecC-CCEEEEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARI-SDWVAHQNAIFDLCWIKE-DTNILTA  126 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~s~~-~~~l~s~  126 (512)
                      |.+.|.+++|   +|++++||+|+.||.|++||+++.....  .. ....... ..+.+|.+.|++++|+|+ +..|++|
T Consensus        97 ~~~~V~~v~~---sp~g~~l~sgs~dg~V~lwd~~~~~~~~--~~-i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g  170 (902)
T 2oaj_A           97 VPGKITSIDT---DASLDWMLIGLQNGSMIVYDIDRDQLSS--FK-LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS  170 (902)
T ss_dssp             CSSCEEEEEC---CTTCSEEEEEETTSCEEEEETTTTEEEE--EE-ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEEE---CCCCCEEEEEcCCCcEEEEECCCCcccc--ce-eccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence            6678888888   9999999999999999999998764210  00 0000000 345789999999999995 5789999


Q ss_pred             eCCCcEEEEeCCCCeeeecccCc------------------CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390          127 SGDQTIKIWDAEKKKCTGALMGH------------------TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       127 ~~dg~i~iwd~~~~~~~~~~~~h------------------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  188 (512)
                      +.||.| +||+.+++++..+..|                  ...|++++|+|++ .+|++++.||.|++||+++++....
T Consensus       171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~  248 (902)
T 2oaj_A          171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMA  248 (902)
T ss_dssp             CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEE
Confidence            999999 9999999888777655                  5789999999998 8999999999999999988764321


Q ss_pred             --c-----c------------ccceeeeccccc----c-ccccccc--------ccce----------------------
Q 010390          189 --N-----C------------AESFVFSSAVVK----G-AHLLSQS--------KRVS----------------------  214 (512)
Q Consensus       189 --~-----~------------~~~~~~~~~~~~----~-~~~~~~~--------~~~~----------------------  214 (512)
                        .     .            ....+....+..    . .......        ..+.                      
T Consensus       249 r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~  328 (902)
T 2oaj_A          249 RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYY  328 (902)
T ss_dssp             ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHH
T ss_pred             EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhh
Confidence              0     0            011222222211    0 0100000        0000                      


Q ss_pred             -------ecc-cccccEEEEEEee----------cCCEEEEEeecCCeEEEEeccCccceeccc------CCC-------
Q 010390          215 -------RRK-AASMSITSVLYLK----------DEVSIATASAVNSIVKFWDTRNLKAQITQA------WPH-------  263 (512)
Q Consensus       215 -------~~~-~~~~~v~~~~~~~----------~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~------~~~-------  263 (512)
                             .+. .+...+.++.+.+          +...+++ ++.|+.|++||+.++.......      ..+       
T Consensus       329 ~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~-~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~  407 (902)
T 2oaj_A          329 ANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL-ILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS  407 (902)
T ss_dssp             HSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE-EETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred             cCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE-EcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence                   010 2356677777755          2224555 4579999999987653221100      000       


Q ss_pred             -----------------ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-------cee
Q 010390          264 -----------------AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-------CRI  319 (512)
Q Consensus       264 -----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~  319 (512)
                                       ......+.+|...+.+++|+|++++|++|+.|++|++||+..........+..       ..+
T Consensus       408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h  487 (902)
T 2oaj_A          408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK  487 (902)
T ss_dssp             EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred             EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence                             00011234556667788899999999999999999999997653221111110       023


Q ss_pred             ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC--------------------------------------------C
Q 010390          320 ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA--------------------------------------------D  355 (512)
Q Consensus       320 ~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~--------------------------------------------~  355 (512)
                      ...+.+++|+|++++||+|+.||+|+||++.+++.                                            +
T Consensus       488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  567 (902)
T 2oaj_A          488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP  567 (902)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred             CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence            45688999999999999999999999999986521                                            1


Q ss_pred             CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc---ccC-ccccceeeeeccc
Q 010390          356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM---RSP-SSVRRRVMAIPST  417 (512)
Q Consensus       356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~-~~~~~~~~~~~~~  417 (512)
                      ...+.+|.+.|++|+|+|+|  +||+|+.|++|++||++++..+..   ... ..+..+|+++.++
T Consensus       568 ~~~l~~h~~~V~svafSpdG--~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs  631 (902)
T 2oaj_A          568 STAVHANKGKTSAINNSNIG--FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV  631 (902)
T ss_dssp             EEEECCCSCSEEEEEECBTS--EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred             eEEEEcCCCcEEEEEecCCc--EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence            34677899999999999998  999999999999999988765431   111 1344556666666

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.6e-36  Score=286.99  Aligned_cols=289  Identities=17%  Similarity=0.257  Sum_probs=227.9

Q ss_pred             EEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEe
Q 010390           59 CKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWD  136 (512)
Q Consensus        59 ~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd  136 (512)
                      ++++|+.. ++++|+.||.|+||++.....         ....+..+.+|.+.|++++|+| ++.+|++|+.||.|+|||
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~---------~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~  110 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGR---------VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE  110 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEE---------CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCC---------CCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence            33388775 444578999999999865321         0123556789999999999999 999999999999999999


Q ss_pred             CCCC-------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390          137 AEKK-------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ  209 (512)
Q Consensus       137 ~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (512)
                      +.++       +++..+.+|...|.+++|+|++.++|++++.||.|++||+++++..                       
T Consensus       111 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~-----------------------  167 (402)
T 2aq5_A          111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV-----------------------  167 (402)
T ss_dssp             CCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE-----------------------
T ss_pred             ccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc-----------------------
Confidence            9988       5677888999999999999997679999999999999999865322                       


Q ss_pred             cccceec--ccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC-eeEEEeCCCC
Q 010390          210 SKRVSRR--KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG-ISSLSQDSNG  286 (512)
Q Consensus       210 ~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~  286 (512)
                          ..+  ..|...|.+++|+|++..++++ +.|+.|++||+++++.....          ...|... +.++.|+|++
T Consensus       168 ----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  232 (402)
T 2aq5_A          168 ----LTLGPDVHPDTIYSVDWSRDGALICTS-CRDKRVRVIEPRKGTVVAEK----------DRPHEGTRPVHAVFVSEG  232 (402)
T ss_dssp             ----EEECTTTCCSCEEEEEECTTSSCEEEE-ETTSEEEEEETTTTEEEEEE----------ECSSCSSSCCEEEECSTT
T ss_pred             ----EEEecCCCCCceEEEEECCCCCEEEEE-ecCCcEEEEeCCCCceeeee----------ccCCCCCcceEEEEcCCC
Confidence                133  4678899999999999988875 48999999999987765532          1344444 8999999999


Q ss_pred             CEEEEE---ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE-EecCCCCEEEEecCCCCCCCceecc-
Q 010390          287 VFLTAS---CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL-SGSSDGNAYVWQVNKPQADPIKLKS-  361 (512)
Q Consensus       287 ~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~~~~~-  361 (512)
                      .+|+++   +.|+.|++||++...... .... ......+..++|+|++++|+ +|+.||.|++||+.+++.....+.. 
T Consensus       233 ~~l~~g~~~~~d~~i~iwd~~~~~~~~-~~~~-~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~  310 (402)
T 2aq5_A          233 KILTTGFSRMSERQVALWDTKHLEEPL-SLQE-LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF  310 (402)
T ss_dssp             EEEEEEECTTCCEEEEEEETTBCSSCS-EEEE-CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred             cEEEEeccCCCCceEEEEcCccccCCc-eEEe-ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence            999999   799999999997754322 2211 12234577899999999986 5667999999999987743344444 


Q ss_pred             -ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          362 -HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       362 -h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                       |...|.+++|+|++ .++++  .|+.+++|++.++++.
T Consensus       311 ~~~~~v~~~~~sp~~-~~~~s--~~~~~~~~~l~~~~~~  346 (402)
T 2aq5_A          311 SSKESQRGMGYMPKR-GLEVN--KCEIARFYKLHERKCE  346 (402)
T ss_dssp             CCSSCCSEEEECCGG-GSCGG--GTEEEEEEEEETTEEE
T ss_pred             ccCCcccceEEeccc-cccee--cceeEEEEEcCCCcEE
Confidence             45899999999998 66654  5679999999987643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.1e-35  Score=297.24  Aligned_cols=311  Identities=11%  Similarity=0.139  Sum_probs=250.7

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCc-EEEEEEec--CC
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA-IFDLCWIK--ED  120 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~s~--~~  120 (512)
                      .....|.+.|.+++|   +|+|++||+++ ++.|+|||+.++..         .......+.+|.+. |++++|+|  ++
T Consensus        12 ~~~~~~~~~v~~~~~---spdg~~l~~~~-~~~v~v~~~~~~~~---------~~~~~~~~~~h~~~~v~~~~~sp~~~~   78 (615)
T 1pgu_A           12 PQPSTQRNFTTHLSY---DPTTNAIAYPC-GKSAFVRCLDDGDS---------KVPPVVQFTGHGSSVVTTVKFSPIKGS   78 (615)
T ss_dssp             CCCCCCTTCCCCCEE---ETTTTEEEEEE-TTEEEEEECCSSCC---------SSCSEEEECTTTTSCEEEEEECSSTTC
T ss_pred             CCCCCccCceeEEEE---CCCCCEEEEec-CCeEEEEECCCCCC---------ccccceEEecCCCceEEEEEECcCCCC
Confidence            345579999999999   99999999998 88999999986510         01237778899999 99999999  99


Q ss_pred             CEEEEEeCCCcEEEEeCCCC--------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCCCCCC
Q 010390          121 TNILTASGDQTIKIWDAEKK--------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKSSPKS  188 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~  188 (512)
                      ++|++|+.||.|+|||+.++        +....+..|...|.+++|+|++ .+|++++.+    +.|++||..  +    
T Consensus        79 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~d~~--~----  151 (615)
T 1pgu_A           79 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSG--N----  151 (615)
T ss_dssp             CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTC--C----
T ss_pred             CEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEEECC--C----
Confidence            99999999999999999754        6777888899999999999998 889999887    689999832  1    


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccc
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS  268 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  268 (512)
                                             ....+..|...|.+++|+|++..++++++.|+.|++||+.+.+...           
T Consensus       152 -----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~-----------  197 (615)
T 1pgu_A          152 -----------------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA-----------  197 (615)
T ss_dssp             -----------------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE-----------
T ss_pred             -----------------------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee-----------
Confidence                                   1224557888999999999998555557789999999998877655           


Q ss_pred             ccccccc---CeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeec--eeceeEEEEEECCCCCEEEEecCCC
Q 010390          269 AKETRLH---GISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC--RIESFYVKSEICPNASHILSGSSDG  342 (512)
Q Consensus       269 ~~~~~~~---~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg  342 (512)
                      .+..|..   .|.+++|+|+ +++|++++.||.|++||+.+.  ..+..+...  .....+.+++|+ ++++|++++.|+
T Consensus       198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~  274 (615)
T 1pgu_A          198 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG--EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA  274 (615)
T ss_dssp             EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC--CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred             eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC--CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence            3455666   8999999999 999999999999999998653  333444110  234568899999 999999999999


Q ss_pred             CEEEEecCCCCCCCceeccc----cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeecc
Q 010390          343 NAYVWQVNKPQADPIKLKSH----DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPS  416 (512)
Q Consensus       343 ~i~iw~~~~~~~~~~~~~~h----~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  416 (512)
                      .|++||+.+++. ...+..+    ...+.++.|. ++ .++++++.||.|++||+.+++.+..+.  .+...+.++.+
T Consensus       275 ~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~--~~~~~v~~~~~  347 (615)
T 1pgu_A          275 TIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTIS--GHNKGITALTV  347 (615)
T ss_dssp             EEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEEC--CCSSCEEEEET
T ss_pred             cEEEEECCCCcE-EEEEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEe--CCCCCEEEEEe
Confidence            999999988765 3455544    4678899986 66 799999999999999999887766543  23445555555

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-35  Score=281.70  Aligned_cols=266  Identities=13%  Similarity=0.229  Sum_probs=216.7

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      |.+...+.||.++|.+++|   +|++++||+|+.||.|+|||+....           ...+..+.+|...|++++|+++
T Consensus         1 G~~~~~~~~h~~~v~~~~~---s~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~   66 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVL---DYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHP   66 (379)
T ss_dssp             ----CCEEECCCCEEEEEE---CSSSSEEEEEETTSCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCG
T ss_pred             CCccEEecCCcccEEEEEE---cCCCCEEEEEECCCcEEEEecCCCc-----------ceeeeEecCCCCcEEEEEeCCC
Confidence            3456778899999999999   9999999999999999999987432           2446778899999999999976


Q ss_pred             --CCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCC--CCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          120 --DTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPT--NSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       120 --~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                        +++|++|+.||.|++||+.+++  .+..+..|...|.+++|+|+  + .+|++++.|+.|++||++.......     
T Consensus        67 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~-----  140 (379)
T 3jrp_A           67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP-----  140 (379)
T ss_dssp             GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCE-----
T ss_pred             CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceee-----
Confidence              9999999999999999999987  77788889999999999998  6 8999999999999999987643221     


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEee-------------cCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-------------DEVSIATASAVNSIVKFWDTRNLKAQITQA  260 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~  260 (512)
                                          .....|...|.+++|+|             ++..+++ ++.|+.|++||+++........
T Consensus       141 --------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~  199 (379)
T 3jrp_A          141 --------------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLE  199 (379)
T ss_dssp             --------------------EEEECCTTCEEEEEECCCC----------CTTCEEEE-EETTSCEEEEEEETTTTEEEEE
T ss_pred             --------------------EEecCCCCceEEEEEcCccccccccccCCCCCCEEEE-EeCCCeEEEEEecCCCcceeeE
Confidence                                13456788999999999             5777776 5589999999998765432111


Q ss_pred             CCCccccccccccccCeeEEEeCCC---CCEEEEEecCCeEEEEEcccCCCCceEe-eeeceeceeEEEEEECCCCCEEE
Q 010390          261 WPHAESSSAKETRLHGISSLSQDSN---GVFLTASCMDHRIYLYNVLQLDKGPIQH-FSGCRIESFYVKSEICPNASHIL  336 (512)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~  336 (512)
                             .....|...|.+++|+|+   +.+|++++.||.|++||+.......... .........+.+++|+|++++|+
T Consensus       200 -------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  272 (379)
T 3jrp_A          200 -------STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA  272 (379)
T ss_dssp             -------EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred             -------EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence                   035667889999999999   8999999999999999997754332222 22223456688999999999999


Q ss_pred             EecCCCCEEEEecCCCC
Q 010390          337 SGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       337 ~g~~dg~i~iw~~~~~~  353 (512)
                      +++.||.|++|++....
T Consensus       273 ~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          273 LSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEESSSSEEEEEEEETT
T ss_pred             EecCCCcEEEEeCCCCC
Confidence            99999999999998543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-36  Score=294.28  Aligned_cols=280  Identities=13%  Similarity=0.078  Sum_probs=199.6

Q ss_pred             ccCCcceEEEEEecCCC------cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           49 EETPPLAVSFCKTSKNS------HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~------~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      +.++|.+|+|++..++.      ++||+|+.++.        .                            -..+|+++.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~----------------------------~~~~~~~~~  175 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D----------------------------EPLNEHLEM  175 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------------------------------------
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C----------------------------Cccchhhhh
Confidence            46789999995432111      79999986531        0                            012688999


Q ss_pred             EEEEeCCCcEEEEeCCCCeee----ecccCcCCCEEEEEeeCCC-----CCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          123 ILTASGDQTIKIWDAEKKKCT----GALMGHTGSIKSLCSHPTN-----SDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~----~~~~~h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      |++++.|++|+|||+.+++..    ..+..|.+.|.+++|+|++     ..+|++++.||+|++||+..+.......   
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~---  252 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF---  252 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE---
T ss_pred             hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc---
Confidence            999999999999999877642    3456678899999999961     3699999999999999998654321000   


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR  273 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  273 (512)
                                   .........+.+|...|++++|++++ .++ +|+.||+|++||++++.....          .+..|
T Consensus       253 -------------~~~~~p~~~l~~h~~~v~sv~~s~~~-~la-sgs~DgtV~lWD~~~~~~~~~----------~~~~H  307 (524)
T 2j04_B          253 -------------KMCEKPSLTLSLADSLITTFDFLSPT-TVV-CGFKNGFVAEFDLTDPEVPSF----------YDQVH  307 (524)
T ss_dssp             -------------ECCCSCSEEECCTTTCEEEEEESSSS-EEE-EEETTSEEEEEETTBCSSCSE----------EEECS
T ss_pred             -------------eeecCceEEEEcCCCCEEEEEecCCC-eEE-EEeCCCEEEEEECCCCCCceE----------Eeecc
Confidence                         00011222456788899999999864 454 577899999999987643221          35678


Q ss_pred             ccCeeEE--EeCCCC-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          274 LHGISSL--SQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       274 ~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      ...|.++  .|++++ .+|++++.|++|++||+++...  ...+.++.....+.+++|+|+++.+++++.|++|++||++
T Consensus       308 ~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~--~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~  385 (524)
T 2j04_B          308 DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT--TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR  385 (524)
T ss_dssp             SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH--HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT
T ss_pred             cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc--ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc
Confidence            8899999  578888 8999999999999999976432  2233333322235678999999999999999999999999


Q ss_pred             CCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          351 KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       351 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      ++.. ...+.+|.+.|++|+|+|++ .+|++|+.||+|++||+..+
T Consensus       386 ~~~~-~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~  429 (524)
T 2j04_B          386 AAFA-VHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARR  429 (524)
T ss_dssp             CTTC-CEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSS
T ss_pred             cccc-ceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHh
Confidence            8766 45778899999999999999 89999999999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-35  Score=280.52  Aligned_cols=258  Identities=19%  Similarity=0.228  Sum_probs=212.5

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC--CCeeeecccCcCCCEEEEEeeCC--CCCeEEEEeCCCcEE
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAE--KKKCTGALMGHTGSIKSLCSHPT--NSDILVSGSRDGSFA  176 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~  176 (512)
                      +..+.+|.+.|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|...|++++|+++  + .+|++++.||.|+
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~   82 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVL   82 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEE
Confidence            56778999999999999999999999999999999998  66778889999999999999876  5 8999999999999


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCcc
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      +||+.+++.                         ........|...|.+++|+|+  +..+++ ++.|+.|++||+++..
T Consensus        83 iwd~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~  136 (379)
T 3jrp_A           83 IWKEENGRW-------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENG  136 (379)
T ss_dssp             EEEEETTEE-------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEECCTTS
T ss_pred             EEEcCCCce-------------------------eEeeeecCCCcceEEEEeCCCCCCCEEEE-ecCCCcEEEEecCCCC
Confidence            999986431                         122244567889999999999  777777 5589999999999874


Q ss_pred             ceecccCCCccccccccccccCeeEEEeCC-------------CCCEEEEEecCCeEEEEEcccCCCC--ceEeeeecee
Q 010390          255 AQITQAWPHAESSSAKETRLHGISSLSQDS-------------NGVFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRI  319 (512)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~  319 (512)
                      .....         ....|...|.+++|+|             ++.+|++++.||.|++||++.....  ....+.+|  
T Consensus       137 ~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h--  205 (379)
T 3jrp_A          137 TTSPI---------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--  205 (379)
T ss_dssp             CCCEE---------EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--
T ss_pred             ceeeE---------EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc--
Confidence            43222         3556778899999999             6999999999999999999765432  22233333  


Q ss_pred             ceeEEEEEECCC---CCEEEEecCCCCEEEEecCCCCCCC----ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          320 ESFYVKSEICPN---ASHILSGSSDGNAYVWQVNKPQADP----IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       320 ~~~~~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~~~----~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      ...+.+++|+|+   +++|++++.||.|++||+.......    .....|...|++++|+|++ .+|++++.||.|++|+
T Consensus       206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK  284 (379)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEE
T ss_pred             cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEe
Confidence            456889999999   8999999999999999998864321    1223488899999999999 8999999999999999


Q ss_pred             CCCCc
Q 010390          393 LENSR  397 (512)
Q Consensus       393 ~~~~~  397 (512)
                      +..+.
T Consensus       285 ~~~~~  289 (379)
T 3jrp_A          285 ENLEG  289 (379)
T ss_dssp             EEETT
T ss_pred             CCCCC
Confidence            98543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.5e-35  Score=272.63  Aligned_cols=301  Identities=18%  Similarity=0.296  Sum_probs=228.8

Q ss_pred             cceeccccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCe-----eeecccCcCCCEEEEEeeCCCCCeEEEEeCC
Q 010390           99 ARISDWVAHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEKKK-----CTGALMGHTGSIKSLCSHPTNSDILVSGSRD  172 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  172 (512)
                      ....+|++|.+.|++|+|+|+ +++|+||+.|++|+|||+.+.+     +...+.+|...|.+++|+|++ .+|++++.|
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d  107 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWD  107 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEccc
Confidence            345678999999999999997 6899999999999999987653     466788999999999999988 899999999


Q ss_pred             CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC
Q 010390          173 GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN  252 (512)
Q Consensus       173 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~  252 (512)
                      +.|++|+.......                           .....+...+..+.+++++..+++ ++.|+.+++||+..
T Consensus       108 ~~i~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~l~s-~s~d~~~~~~d~~~  159 (340)
T 4aow_A          108 GTLRLWDLTTGTTT---------------------------RRFVGHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLG  159 (340)
T ss_dssp             SEEEEEETTTTEEE---------------------------EEEECCSSCEEEEEECTTSSCEEE-EETTSCEEEECTTS
T ss_pred             ccceEEeeccccee---------------------------eeecCCCCceeEEEEeecCcccee-ecCCCeEEEEEeCC
Confidence            99999998754321                           133455667888899999998887 55899999999987


Q ss_pred             ccceecccCCCccccccccccccCeeEEEeCCCC--CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC
Q 010390          253 LKAQITQAWPHAESSSAKETRLHGISSLSQDSNG--VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP  330 (512)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  330 (512)
                      ......          ....|...+..++|++++  .++++++.|+.|++||+...  .....+.++  ...+.+++|+|
T Consensus       160 ~~~~~~----------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~--~~~~~~~~h--~~~v~~~~~s~  225 (340)
T 4aow_A          160 VCKYTV----------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC--KLKTNHIGH--TGYLNTVTVSP  225 (340)
T ss_dssp             CEEEEE----------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT--EEEEEECCC--SSCEEEEEECT
T ss_pred             CceEEE----------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC--ceeeEecCC--CCcEEEEEECC
Confidence            654433          355667789999998764  57889999999999998763  334444444  35688999999


Q ss_pred             CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccce
Q 010390          331 NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRR  410 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  410 (512)
                      ++++|++|+.||.|++||+.+.+. ...+. +...|.+++|+|++  .+++++.|+.|++||++++.++..+.....   
T Consensus       226 ~~~~l~s~s~Dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---  298 (340)
T 4aow_A          226 DGSLCASGGKDGQAMLWDLNEGKH-LYTLD-GGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVI---  298 (340)
T ss_dssp             TSSEEEEEETTCEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-----
T ss_pred             CCCEEEEEeCCCeEEEEEeccCce-eeeec-CCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccce---
Confidence            999999999999999999988765 34444 45689999999986  567777899999999998876654332110   


Q ss_pred             eeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCch
Q 010390          411 VMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPE  463 (512)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  463 (512)
                                  ......+...+. .++|+||+++++.++... .+.+|....
T Consensus       299 ------------~~~~~~h~~~v~-~l~~s~dg~~l~sgs~Dg-~v~iW~~~t  337 (340)
T 4aow_A          299 ------------STSSKAEPPQCT-SLAWSADGQTLFAGYTDN-LVRVWQVTI  337 (340)
T ss_dssp             -----------------CCCCCEE-EEEECTTSSEEEEEETTS-CEEEEEEEC
T ss_pred             ------------eeeccCCCCCEE-EEEECCCCCEEEEEeCCC-EEEEEeCCC
Confidence                        001111222233 678999999888775432 445555443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2e-34  Score=280.05  Aligned_cols=285  Identities=15%  Similarity=0.272  Sum_probs=236.7

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      +.....+.+|.+.|.+++|   +  +++|++|+.||.|++||+.++.             .+..+.+|...|.+++|+  
T Consensus       149 ~~~~~~~~~h~~~v~~~~~---~--~~~l~s~~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~~~~~--  208 (445)
T 2ovr_B          149 GKCLRTLVGHTGGVWSSQM---R--DNIIISGSTDRTLKVWNAETGE-------------CIHTLYGHTSTVRCMHLH--  208 (445)
T ss_dssp             CCEEEECCCCSSCEEEEEE---E--TTEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEE--
T ss_pred             CcEEEEEcCCCCCEEEEEe---c--CCEEEEEeCCCeEEEEECCcCc-------------EEEEECCCCCcEEEEEec--
Confidence            4566778899999999999   4  6799999999999999997763             367788999999999995  


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      ++.|++|+.||.|++||+.+++.+..+.+|...|.+++|  ++ .++++++.||.|++||+++++.              
T Consensus       209 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~--------------  271 (445)
T 2ovr_B          209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETC--------------  271 (445)
T ss_dssp             TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEE--------------
T ss_pred             CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcE--------------
Confidence            578999999999999999999999999999999999999  34 7899999999999999875432              


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                   ...+..|...+.++.|  ++..+++ ++.|+.|++||+++++...           ....|...+.+
T Consensus       272 -------------~~~~~~~~~~v~~~~~--~~~~l~~-~~~d~~i~i~d~~~~~~~~-----------~~~~~~~~v~~  324 (445)
T 2ovr_B          272 -------------LHTLQGHTNRVYSLQF--DGIHVVS-GSLDTSIRVWDVETGNCIH-----------TLTGHQSLTSG  324 (445)
T ss_dssp             -------------EEEECCCSSCEEEEEE--CSSEEEE-EETTSCEEEEETTTCCEEE-----------EECCCCSCEEE
T ss_pred             -------------eEEecCCCCceEEEEE--CCCEEEE-EeCCCeEEEEECCCCCEEE-----------EEcCCcccEEE
Confidence                         2244567889999999  6777776 5589999999999887665           34566677888


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec-eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC-RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      +.++  +.++++++.||.|++||+.+.  ..+..+..+ .....+.+++|+  +++|++|+.||.|++||+.+++.. ..
T Consensus       325 ~~~~--~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~-~~  397 (445)
T 2ovr_B          325 MELK--DNILVSGNADSTVKIWDIKTG--QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI-RN  397 (445)
T ss_dssp             EEEE--TTEEEEEETTSCEEEEETTTC--CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE-EE
T ss_pred             EEEe--CCEEEEEeCCCeEEEEECCCC--cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee-ee
Confidence            7774  669999999999999999763  344455442 134567888885  689999999999999999988753 34


Q ss_pred             e-----ccccCCeEEEEeCCCCCCeEEEEeCCCc----EEEEeCCCC
Q 010390          359 L-----KSHDGEVTAVNWCPNEAGKIVTSSDDYT----VRLWSLENS  396 (512)
Q Consensus       359 ~-----~~h~~~v~~v~~~~~~~~~l~s~~~dg~----i~vwd~~~~  396 (512)
                      +     .+|.+.|++++|+|++ .++++|+.||+    |.+||+...
T Consensus       398 ~~~~~~~~~~~~v~~~~~s~~~-~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          398 LVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCCEEEEEECCCC
T ss_pred             eeccccCCCCceEEEEEecCCE-EEEEEcccCCCCccEEEEEECCCC
Confidence            4     4788899999999999 89999999998    999999753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.7e-34  Score=274.96  Aligned_cols=258  Identities=12%  Similarity=0.139  Sum_probs=206.8

Q ss_pred             cceeccccCCCcEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcE
Q 010390           99 ARISDWVAHQNAIFDLCWIKED-TNILTASGDQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSF  175 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i  175 (512)
                      .....+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+.  +|...|.+++|+|+++.+|++++.|+.|
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            4466778999999999999998 999999999999999999887766654  6999999999999544899999999999


Q ss_pred             EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390          176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA  255 (512)
Q Consensus       176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~  255 (512)
                      ++||++....                         ........+...|.+++|+|++..+++ ++.|+.|++||++ ++.
T Consensus       144 ~iwd~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~-~~~  196 (383)
T 3ei3_B          144 TLRDFSGSVI-------------------------QVFAKTDSWDYWYCCVDVSVSRQMLAT-GDSTGRLLLLGLD-GHE  196 (383)
T ss_dssp             EEEETTSCEE-------------------------EEEECCCCSSCCEEEEEEETTTTEEEE-EETTSEEEEEETT-SCE
T ss_pred             EEEECCCCce-------------------------EEEeccCCCCCCeEEEEECCCCCEEEE-ECCCCCEEEEECC-CCE
Confidence            9999984211                         001112234578999999999998887 5589999999995 333


Q ss_pred             eecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCC--CceEeeeeceeceeEEEEEECC-C
Q 010390          256 QITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDK--GPIQHFSGCRIESFYVKSEICP-N  331 (512)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~-~  331 (512)
                      ..           .+..|...|.+++|+|++. +|++++.|+.|++||++....  ..+..+ +  ....+.+++|+| +
T Consensus       197 ~~-----------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~~~v~~~~~s~~~  262 (383)
T 3ei3_B          197 IF-----------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P--HEKPVNAAYFNPTD  262 (383)
T ss_dssp             EE-----------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E--CSSCEEEEEECTTT
T ss_pred             EE-----------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c--CCCceEEEEEcCCC
Confidence            22           4567888999999999999 999999999999999987442  223333 2  356788999999 9


Q ss_pred             CCEEEEecCCCCEEEEecCCCCCCCceecccc-----------------CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          332 ASHILSGSSDGNAYVWQVNKPQADPIKLKSHD-----------------GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       332 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~-----------------~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      +++|++++.|+.|++||+.+.... ..+.+|.                 +.+..++|+|++ .+  +++.||.|++||+.
T Consensus       263 ~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~  338 (383)
T 3ei3_B          263 STKLLTTDQRNEIRVYSSYDWSKP-DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDAN  338 (383)
T ss_dssp             SCEEEEEESSSEEEEEETTBTTSC-SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETT
T ss_pred             CCEEEEEcCCCcEEEEECCCCccc-cccccccccccccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecC
Confidence            999999999999999999887663 3444332                 345567788887 55  88899999999999


Q ss_pred             CCccccc
Q 010390          395 NSRCSSM  401 (512)
Q Consensus       395 ~~~~~~~  401 (512)
                      +++++..
T Consensus       339 ~~~~~~~  345 (383)
T 3ei3_B          339 SGGLVHQ  345 (383)
T ss_dssp             TCCEEEE
T ss_pred             CCceeee
Confidence            9887665

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-34  Score=281.45  Aligned_cols=284  Identities=16%  Similarity=0.271  Sum_probs=230.8

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-  118 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-  118 (512)
                      +.....+.+|.++|.+++|   +|++ +|++|+.||.|++||++++.             .+..+.+|.+.|.+++|++ 
T Consensus       152 ~~~~~~~~~h~~~V~~l~~---~~~~-~l~s~s~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~l~~~~~  214 (464)
T 3v7d_B          152 KKFLLQLSGHDGGVWALKY---AHGG-ILVSGSTDRTVRVWDIKKGC-------------CTHVFEGHNSTVRCLDIVEY  214 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEE---CSTT-EEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEEES
T ss_pred             CcEEEEEeCCCcCEEEEEE---cCCC-EEEEEeCCCCEEEEECCCCc-------------EEEEECCCCCccEEEEEecC
Confidence            4566678899999999999   8887 99999999999999998763             3677889999999999994 


Q ss_pred             -CCCEEEEEeCCCcEEEEeCCCCee-----------------------eecccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390          119 -EDTNILTASGDQTIKIWDAEKKKC-----------------------TGALMGHTGSIKSLCSHPTNSDILVSGSRDGS  174 (512)
Q Consensus       119 -~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  174 (512)
                       ++.+|++|+.||.|++||+.++..                       +..+.+|...|.++.  +++ .++++++.||.
T Consensus       215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~  291 (464)
T 3v7d_B          215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNT  291 (464)
T ss_dssp             SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSC
T ss_pred             CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCe
Confidence             778999999999999999987653                       445678889998875  445 89999999999


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      |++||+++++.                           ...+..|...|.+++|+|++..+++ |+.||.|++||+++++
T Consensus       292 i~vwd~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~~~l~s-g~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          292 LIVWDVAQMKC---------------------------LYILSGHTDRIYSTIYDHERKRCIS-ASMDTTIRIWDLENGE  343 (464)
T ss_dssp             EEEEETTTTEE---------------------------EEEECCCSSCEEEEEEETTTTEEEE-EETTSCEEEEETTTTE
T ss_pred             EEEEECCCCcE---------------------------EEEecCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCc
Confidence            99999985432                           2245578889999999999999887 5589999999999887


Q ss_pred             ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE
Q 010390          255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH  334 (512)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  334 (512)
                      ...           .+..|...|.++.++  +.+|++++.||.|++||+.+..  ......   ....+..++|++++++
T Consensus       344 ~~~-----------~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~--~~~~~~---~~~~~~~~~~~~~~~~  405 (464)
T 3v7d_B          344 LMY-----------TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--RKFSYH---HTNLSAITTFYVSDNI  405 (464)
T ss_dssp             EEE-----------EECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC--EEEEEE---CTTCCCEEEEEECSSE
T ss_pred             EEE-----------EEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc--eeeeec---CCCCccEEEEEeCCCE
Confidence            665           456788889999997  5799999999999999997633  222221   2233455789999999


Q ss_pred             EEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          335 ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       335 l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      |++|+ ||.|++||+.+++.....+..|...|.+++|+. + .++++++.||.+.+|-
T Consensus       406 l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~-~-~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          406 LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-K-TLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEET-T-EEEEEEEETTEEEEEE
T ss_pred             EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecC-C-EEEEEEEeCCeEEEEE
Confidence            99998 899999999998764444678899999999973 2 5677777888666554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-34  Score=274.93  Aligned_cols=263  Identities=16%  Similarity=0.263  Sum_probs=206.6

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      +|.+.|.+++|   +|++++||+|+.||.|+|||+.++.             .+..+.+|...|.+++|  ++++|++|+
T Consensus       132 ~~~~~v~~v~~---s~~~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~v~~~~~--~~~~l~~~~  193 (401)
T 4aez_A          132 DESTYVASVKW---SHDGSFLSVGLGNGLVDIYDVESQT-------------KLRTMAGHQARVGCLSW--NRHVLSSGS  193 (401)
T ss_dssp             CTTCCEEEEEE---CTTSSEEEEEETTSCEEEEETTTCC-------------EEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred             CCCCCEEEEEE---CCCCCEEEEECCCCeEEEEECcCCe-------------EEEEecCCCCceEEEEE--CCCEEEEEc
Confidence            38889999999   9999999999999999999997763             36777899999999999  467999999


Q ss_pred             CCCcEEEEeCC-CCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          128 GDQTIKIWDAE-KKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       128 ~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      .||.|++||+. .+..+..+.+|.+.|.+++|+|++ .+|++++.||.|++||+++...                     
T Consensus       194 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~---------------------  251 (401)
T 4aez_A          194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIP---------------------  251 (401)
T ss_dssp             TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSE---------------------
T ss_pred             CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCc---------------------
Confidence            99999999998 566788889999999999999987 8999999999999999986432                     


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEee--cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASA--VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS  284 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (512)
                            ...+..|...|.+++|+|++..++++++  .|+.|++||+++++....            ..+...|.+++|+|
T Consensus       252 ------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~------------~~~~~~v~~~~~s~  313 (401)
T 4aez_A          252 ------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNT------------VDAGSQVTSLIWSP  313 (401)
T ss_dssp             ------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEE------------EECSSCEEEEEECS
T ss_pred             ------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEE------------EeCCCcEEEEEECC
Confidence                  1234567889999999998887777764  799999999998876543            23456799999999


Q ss_pred             CCCEEEEE--ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390          285 NGVFLTAS--CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH  362 (512)
Q Consensus       285 ~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h  362 (512)
                      ++.+++++  +.||.|++||+..........+.++  ...+.+++|+|++++|++++.||.|++|++.+++........+
T Consensus       314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h--~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~  391 (401)
T 4aez_A          314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH--DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPIT  391 (401)
T ss_dssp             SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC--SSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----------
T ss_pred             CCCeEEEEeecCCCcEEEEecCCccceeEEEecCC--CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccccccc
Confidence            99999995  4899999999976443333344444  3567889999999999999999999999999877644333333


Q ss_pred             cCCeEEEE
Q 010390          363 DGEVTAVN  370 (512)
Q Consensus       363 ~~~v~~v~  370 (512)
                      .....++.
T Consensus       392 ~~~~~~i~  399 (401)
T 4aez_A          392 KTPSSSIT  399 (401)
T ss_dssp             --------
T ss_pred             CCCcccee
Confidence            44444443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.3e-35  Score=282.89  Aligned_cols=297  Identities=13%  Similarity=0.143  Sum_probs=212.6

Q ss_pred             eeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE
Q 010390          101 ISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI  177 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  177 (512)
                      ......|...|++|+|+| ++.+||+|+.||+|+|||+.+++.  ...+.+|.+.|++|+|+|.++++|++++.||+|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            344567889999999999 567899999999999999987654  44567899999999999966689999999999999


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                      ||++......                         ......+...+.+++|+|++..+++ |+.||.|++||++.... .
T Consensus       192 wd~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~l~~-g~~dg~i~~wd~~~~~~-~  244 (435)
T 4e54_B          192 QDFKGNILRV-------------------------FASSDTINIWFCSLDVSASSRMVVT-GDNVGNVILLNMDGKEL-W  244 (435)
T ss_dssp             EETTSCEEEE-------------------------EECCSSCSCCCCCEEEETTTTEEEE-ECSSSBEEEEESSSCBC-C
T ss_pred             eeccCCceeE-------------------------EeccCCCCccEEEEEECCCCCEEEE-EeCCCcEeeeccCccee-E
Confidence            9997532110                         0011233446789999999998887 55899999999875332 1


Q ss_pred             cccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCce-EeeeeceeceeEEEEEECCCCCEE
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPI-QHFSGCRIESFYVKSEICPNASHI  335 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l  335 (512)
                                 .+..|...|.+++|+|++. +|++++.|+.|++||++....... ....+  +...+.+++|+|++++|
T Consensus       245 -----------~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~spdg~~l  311 (435)
T 4e54_B          245 -----------NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP--HRHPVNAACFSPDGARL  311 (435)
T ss_dssp             -----------CSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCB--CSSCEEECCBCTTSSEE
T ss_pred             -----------EEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeee--ccccccceeECCCCCee
Confidence                       4667888999999999876 788999999999999977543322 12222  34568889999999999


Q ss_pred             EEecCCCCEEEEecCCCCCCCceeccccC------CeEEEEeCCCCCCeEEEE------------eCCCcEEEEeCCCCc
Q 010390          336 LSGSSDGNAYVWQVNKPQADPIKLKSHDG------EVTAVNWCPNEAGKIVTS------------SDDYTVRLWSLENSR  397 (512)
Q Consensus       336 ~~g~~dg~i~iw~~~~~~~~~~~~~~h~~------~v~~v~~~~~~~~~l~s~------------~~dg~i~vwd~~~~~  397 (512)
                      ++|+.||.|+|||+.++... ..+..|..      .+..+.|+|++ .+++++            ..++.|++||..+++
T Consensus       312 ~s~~~D~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~  389 (435)
T 4e54_B          312 LTTDQKSEIRVYSASQWDCP-LGLIPHPHRHFQHLTPIKAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK  389 (435)
T ss_dssp             EEEESSSCEEEEESSSSSSE-EEECCCCCCCCSSSCCCBCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred             EEEcCCCEEEEEECCCCccc-eEEecccccccccceeEEEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence            99999999999999887653 33333321      22334556655 344443            244689999999887


Q ss_pred             ccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCchh
Q 010390          398 CSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPEA  464 (512)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  464 (512)
                      ++..+..                       .+...+....+|+|++.+++.++..  .+.+|...++
T Consensus       390 ~~~~l~~-----------------------~~~~~v~s~~~fspdg~~lasg~d~--~i~iW~~~~g  431 (435)
T 4e54_B          390 MMCQLYD-----------------------PESSGISSLNEFNPMGDTLASAMGY--HILIWSQQEA  431 (435)
T ss_dssp             EEEEECC-----------------------SSCCCCCCEEEECTTSSCEEEECSS--EEEECCCC--
T ss_pred             EEEEEeC-----------------------CCCCcEEEEEEECCCCCEEEEEcCC--cEEEEECCcC
Confidence            6553211                       0111122123688999888877543  4566666544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-35  Score=278.90  Aligned_cols=275  Identities=8%  Similarity=0.051  Sum_probs=211.6

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .+....+.....|.+|+|   ||||+++|+++.|++|+  |....                ..+.+|...|++++|+|+|
T Consensus         6 ~~~~~~~~~~~~v~sv~~---SpDG~~iASas~D~TV~--d~~~~----------------~~l~gh~~~v~~V~FsPdg   64 (588)
T 2j04_A            6 DLLVDRKEFEDWKNNLTW---ARDGTLYLTTFPDISIG--QPKYA----------------KDINCNSKNLFHVKEFPLE   64 (588)
T ss_dssp             CEEECSCCCSSSSCCEEE---CTTSCEEEECSSSEEEE--EECCC----------------SCCSSBGGGTEEEEEECCC
T ss_pred             hhcccHhHhhccEEEEEE---CCCCCEEEEEcCCceee--ccccc----------------ceecCCCccEEEEEECCCC
Confidence            345666778899999999   99999999999999999  64322                3347899999999999998


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                             .++.+.+|+.+.. ....+ .|...|.+++|+|+| .+||+++.||.|++||...  .               
T Consensus        65 -------~~~~~~~~~~~~~-~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~---------------  117 (588)
T 2j04_A           65 -------FENKLDFELAQQN-GLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--M---------------  117 (588)
T ss_dssp             -------CCCTTTTSCCCSS-CSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--E---------------
T ss_pred             -------CcceEEEEeCCCc-eEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--e---------------
Confidence                   4665555554322 23333 458899999999998 9999999999999999542  0               


Q ss_pred             ccccccccccccceecccccc-----cEEEEEEeecCCEEEEEeecCCeEEEEeccCccc-------eecccCCCccccc
Q 010390          201 VKGAHLLSQSKRVSRRKAASM-----SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA-------QITQAWPHAESSS  268 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~  268 (512)
                                  ...+. |..     .+.+++|+|+|+.+++++ .||+|++||+.++..       .....       .
T Consensus       118 ------------l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs-~DGtVkIWd~~~~~l~~~~~i~l~ti~-------~  176 (588)
T 2j04_A          118 ------------LTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN-EDGELQFFSIRKNSENTPEFYFESSIR-------L  176 (588)
T ss_dssp             ------------EEECC-CSSCSTTTCEEEEEECSSSSCEEEEE-TTSEEEEEECCCCTTTCCCCEEEEEEE-------C
T ss_pred             ------------eeecc-CCCccccccEEEEEEcCCCCEEEEEc-CCCEEEEEECCCCccccccceeeeeee-------c
Confidence                        00112 222     599999999999999855 899999999998643       11100       0


Q ss_pred             cccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC-ceEeee-eceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390          269 AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG-PIQHFS-GCRIESFYVKSEICPNASHILSGSSDGNAYV  346 (512)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  346 (512)
                      ...+|...|.+++|+|+|  +++++.|+.|++||+...... ....+. ++  ...+.+++|+  ++.||+++ ++.|++
T Consensus       177 ~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~~~V~svaFs--g~~LASa~-~~tIkL  249 (588)
T 2j04_A          177 SDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--RRKITDLKIV--DYKVVLTC-PGYVHK  249 (588)
T ss_dssp             SCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--SSCCCCEEEE--TTEEEEEC-SSEEEE
T ss_pred             ccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--cCcEEEEEEE--CCEEEEEe-CCeEEE
Confidence            125577899999999999  888899999999999764432 223342 33  2457779998  68899887 699999


Q ss_pred             EecCCCCCCCceeccccCCeEEEEe--CCCCCCeEEEEeCCCcEEEEeCC
Q 010390          347 WQVNKPQADPIKLKSHDGEVTAVNW--CPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       347 w~~~~~~~~~~~~~~h~~~v~~v~~--~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      ||+.+.+.. ....+|.+.|.+++|  +|++ ..|++++.||+ ++|..+
T Consensus       250 Wd~~~~~~~-~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          250 IDLKNYSIS-SLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EETTTTEEE-EEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESS
T ss_pred             EECCCCeEE-EEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeec
Confidence            999886652 233389999999999  9999 89999999999 999987

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=279.82  Aligned_cols=288  Identities=13%  Similarity=0.130  Sum_probs=209.2

Q ss_pred             cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-----------eeecccCcC------------CCEEEEEeeCCC
Q 010390          106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-----------CTGALMGHT------------GSIKSLCSHPTN  162 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~h~------------~~v~~l~~~~~~  162 (512)
                      .|.+.|++++|+|++++|++|+.||.|+|||+.+++           ....+.+|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999999999999999999999999998876           577888998            889999999986


Q ss_pred             C-CeEEEEeCCCcEEEEeCCCCCCCCCccc----cce------eeeccc---ccccccccccccceecccccccEEEEEE
Q 010390          163 S-DILVSGSRDGSFAIWDLRCKSSPKSNCA----ESF------VFSSAV---VKGAHLLSQSKRVSRRKAASMSITSVLY  228 (512)
Q Consensus       163 ~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~  228 (512)
                      . .+|++++.|+.|++||+..+........    ...      +....+   ..................|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence            4 5899999999999999875332100000    000      000000   0000000000001123578999999999


Q ss_pred             eecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEcccCC
Q 010390          229 LKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNVLQLD  307 (512)
Q Consensus       229 ~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~  307 (512)
                      +|++..+++ | .|+.|++||+++............   .....|...|.+++|+|++ .+|++++.||.|++||++...
T Consensus       186 ~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          186 NSDYETYLS-A-DDLRINLWHLEITDRSFNIVDIKP---ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             CTTSSEEEE-E-CSSEEEEEETTEEEEEEEEEECCC---SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             cCCCCEEEE-e-CCCeEEEEECCCCCceeeeeeccc---ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            999998887 5 699999999995433222110000   0356788899999999998 999999999999999997754


Q ss_pred             CC--ceEeeeecee----------ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCC----------
Q 010390          308 KG--PIQHFSGCRI----------ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGE----------  365 (512)
Q Consensus       308 ~~--~~~~~~~~~~----------~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~----------  365 (512)
                      ..  ....+..+..          ...+.+++|+|++++|++++. +.|++||+.........+.+|...          
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN  339 (447)
T ss_dssp             SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred             cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence            31  1344444431          126889999999999999998 999999998744446777778642          


Q ss_pred             -----eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          366 -----VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       366 -----v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                           +..++|+|++ .+|++|+.||.|++||+.+++.+.
T Consensus       340 ~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          340 DCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             SGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCCEEE
T ss_pred             cccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCccee
Confidence                 3349999999 899999999999999999998764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.5e-34  Score=293.81  Aligned_cols=301  Identities=17%  Similarity=0.273  Sum_probs=224.9

Q ss_pred             eeccccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEeCCCC-----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390          101 ISDWVAHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEKK-----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS  174 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  174 (512)
                      ...+++|.+.|++++|+|+ +++|++|+.|++|+|||+.+.     .....+.+|...|.+++|+|++ .+|++|+.||.
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~  453 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGE  453 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCc
Confidence            3457899999999999986 478999999999999998763     3456788999999999999988 99999999999


Q ss_pred             EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390          175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      |++||+.++..                           ...+.+|...|.+++|+|++..+++ |+.|+.|++||+....
T Consensus       454 v~vwd~~~~~~---------------------------~~~~~~h~~~v~~~~~s~~~~~l~s-~s~D~~i~iwd~~~~~  505 (694)
T 3dm0_A          454 LRLWDLAAGVS---------------------------TRRFVGHTKDVLSVAFSLDNRQIVS-ASRDRTIKLWNTLGEC  505 (694)
T ss_dssp             EEEEETTTTEE---------------------------EEEEECCSSCEEEEEECTTSSCEEE-EETTSCEEEECTTSCE
T ss_pred             EEEEECCCCcc---------------------------eeEEeCCCCCEEEEEEeCCCCEEEE-EeCCCEEEEEECCCCc
Confidence            99999975432                           2255688999999999999999887 4589999999986543


Q ss_pred             ceecccCCCccccccccccccCeeEEEeCCCC--CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390          255 AQITQAWPHAESSSAKETRLHGISSLSQDSNG--VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA  332 (512)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  332 (512)
                      ......        ....|...|.+++|+|++  ..|++++.|+.|++||++..  .....+.+|  ...+.+++|+|++
T Consensus       506 ~~~~~~--------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~--~~~~~~~~h--~~~v~~v~~spdg  573 (694)
T 3dm0_A          506 KYTISE--------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC--KLRSTLAGH--TGYVSTVAVSPDG  573 (694)
T ss_dssp             EEEECS--------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC--CEEEEECCC--SSCEEEEEECTTS
T ss_pred             ceeecc--------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC--cEEEEEcCC--CCCEEEEEEeCCC
Confidence            322110        235677889999999987  58999999999999999753  344455554  3568899999999


Q ss_pred             CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceee
Q 010390          333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVM  412 (512)
Q Consensus       333 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  412 (512)
                      ++|++|+.||.|++||+.+++.. ..+ .+...|.+++|+|++ .+|++++ |+.|++||+.+++++..+..........
T Consensus       574 ~~l~sg~~Dg~i~iwd~~~~~~~-~~~-~~~~~v~~~~~sp~~-~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~  649 (694)
T 3dm0_A          574 SLCASGGKDGVVLLWDLAEGKKL-YSL-EANSVIHALCFSPNR-YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEK  649 (694)
T ss_dssp             SEEEEEETTSBCEEEETTTTEEE-ECC-BCSSCEEEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----
T ss_pred             CEEEEEeCCCeEEEEECCCCceE-EEe-cCCCcEEEEEEcCCC-cEEEEEc-CCCEEEEECCCCCChhhhcccccccccc
Confidence            99999999999999999887652 333 345689999999998 6666655 5669999999998776543221100000


Q ss_pred             eeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390          413 AIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD  452 (512)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  452 (512)
                      . ....    ..........+. .++|+||++++++++..
T Consensus       650 ~-~~~~----~~~~~~~~~~~~-~l~~spdg~~l~sgs~D  683 (694)
T 3dm0_A          650 A-DNSG----PAATKRKVIYCT-SLNWSADGSTLFSGYTD  683 (694)
T ss_dssp             ----------------CCCCEE-EEEECTTSSEEEEEETT
T ss_pred             c-cccc----cccCCceeEEee-eEEEcCCCCEEEEEcCC
Confidence            0 0000    000111111223 67899999999877543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1e-33  Score=296.51  Aligned_cols=297  Identities=17%  Similarity=0.204  Sum_probs=238.7

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      +.....+.+|.++|.+++|   +|++++||+|+.||.|+|||+.++..             +..+.+|.+.|++++|+|+
T Consensus        45 ~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~dg~i~vw~~~~~~~-------------~~~~~~~~~~v~~~~~s~~  108 (814)
T 3mkq_A           45 QVEVRSIQVTETPVRAGKF---IARKNWIIVGSDDFRIRVFNYNTGEK-------------VVDFEAHPDYIRSIAVHPT  108 (814)
T ss_dssp             TEEEEEEECCSSCEEEEEE---EGGGTEEEEEETTSEEEEEETTTCCE-------------EEEEECCSSCEEEEEECSS
T ss_pred             CceEEEEecCCCcEEEEEE---eCCCCEEEEEeCCCeEEEEECCCCcE-------------EEEEecCCCCEEEEEEeCC
Confidence            4556677789999999999   99999999999999999999987643             6777899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          120 DTNILTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      +++|++++.||.|++||+.++ .....+.+|...|.+++|+|.++..|++++.||.|++||+..+.....          
T Consensus       109 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~----------  178 (814)
T 3mkq_A          109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT----------  178 (814)
T ss_dssp             SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEE----------
T ss_pred             CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeE----------
Confidence            999999999999999999887 777888899999999999994438999999999999999976543221          


Q ss_pred             ccccccccccccccceecccccccEEEEEEee--cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLK--DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                      ....+...+.+++|+|  ++..+++ ++.||.|++||+++++...           ....|...
T Consensus       179 ----------------~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~-----------~~~~~~~~  230 (814)
T 3mkq_A          179 ----------------LTTGQERGVNYVDYYPLPDKPYMIT-ASDDLTIKIWDYQTKSCVA-----------TLEGHMSN  230 (814)
T ss_dssp             ----------------EECCCTTCCCEEEECCSTTCCEEEE-ECTTSEEEEEETTTTEEEE-----------EEECCSSC
T ss_pred             ----------------EecCCCCCEEEEEEEECCCCCEEEE-EeCCCEEEEEECCCCcEEE-----------EEcCCCCC
Confidence                            1113347899999999  8888777 5589999999999877654           35667788


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC--EEEEecCCCCEEEEecCCCCC
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS--HILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      |.+++|+|++.+|++++.||.|++||+.+.  .....+..+  ...+.+++|+|++.  ++++++ ++.+.+|++.....
T Consensus       231 v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~--~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTY--KVEKTLNVG--LERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEP  305 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTC--SEEEEECCS--SSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSC
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEeecC--CCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCc
Confidence            999999999999999999999999998653  334444333  34578899999987  455555 56688888754321


Q ss_pred             CC------------------------------------------ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          355 DP------------------------------------------IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       355 ~~------------------------------------------~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      ..                                          .....+...+.+++|+|++ .++++++ |+.+.+|+
T Consensus       306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~la~~~-~~~~~i~~  383 (814)
T 3mkq_A          306 TLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG-RFVTVVG-DGEYVIYT  383 (814)
T ss_dssp             CEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS-SEEEEEE-TTEEEEEE
T ss_pred             eeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC-CEEEEec-CCEEEEEE
Confidence            10                                          1123345578999999999 7888888 89999999


Q ss_pred             CCCCc
Q 010390          393 LENSR  397 (512)
Q Consensus       393 ~~~~~  397 (512)
                      +....
T Consensus       384 ~~~~~  388 (814)
T 3mkq_A          384 ALAWR  388 (814)
T ss_dssp             TTTTE
T ss_pred             Ccccc
Confidence            86543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=266.37  Aligned_cols=303  Identities=15%  Similarity=0.160  Sum_probs=235.6

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      .....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.||.|++|
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLW  101 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEE
Confidence            4456788999999999999999999999999999999999999999999999999999999987 899999999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-----CeEEEEeccCc
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-----SIVKFWDTRNL  253 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-----g~i~iwd~~~~  253 (512)
                      |+.+++...                           .. .+...+.+++|+|++..+++++ .+     +.|.+||+...
T Consensus       102 d~~~~~~~~---------------------------~~-~~~~~v~~~~~~~~~~~l~~~~-~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B          102 DVSNGQCVA---------------------------TW-KSPVPVKRVEFSPCGNYFLAIL-DNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             ETTTCCEEE---------------------------EE-ECSSCEEEEEECTTSSEEEEEE-CCBTTBCCEEEEEEEEEC
T ss_pred             ECCCCcEEE---------------------------Ee-ecCCCeEEEEEccCCCEEEEec-CCccCCCCEEEEEEecCC
Confidence            998664322                           11 2567899999999999998855 57     99999999877


Q ss_pred             cceecccCCCcccccccccccc--CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC
Q 010390          254 KAQITQAWPHAESSSAKETRLH--GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN  331 (512)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  331 (512)
                      ...................+..  .+.+++|+|++++|++++.||.|++||+... ......+..+  ...+.+++|+|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~--~~~v~~~~~~~~  229 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-YEYVDSIDLH--EKSISDMQFSPD  229 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-TEEEEEEECC--SSCEEEEEECTT
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-cEeEEEEecC--CCceeEEEECCC
Confidence            5443322222112223344444  8999999999999999999999999998652 2334444443  356888999999


Q ss_pred             CCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC--------------cEEEEeCCCCc
Q 010390          332 ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY--------------TVRLWSLENSR  397 (512)
Q Consensus       332 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg--------------~i~vwd~~~~~  397 (512)
                      +++|++++.|+.|++||+.+.+.. ..+. +...+.+++|+|++ .++++++.++              .+++||+.+++
T Consensus       230 ~~~l~~~~~d~~i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  306 (369)
T 3zwl_B          230 LTYFITSSRDTNSFLVDVSTLQVL-KKYE-TDCPLNTAVITPLK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE  306 (369)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEE-EEEE-CSSCEEEEEECSSS-SEEEEEECCC-------------CEEEEEETTTCC
T ss_pred             CCEEEEecCCceEEEEECCCCcee-eeec-CCCCceeEEecCCC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence            999999999999999999887653 3343 78899999999999 8999999888              89999998887


Q ss_pred             ccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCch
Q 010390          398 CSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTPE  463 (512)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  463 (512)
                      .+..+..                    +    ...+. .++|+|++++++.++... .+.+|....
T Consensus       307 ~~~~~~~--------------------~----~~~v~-~~~~s~~~~~l~s~~~dg-~v~iw~~~~  346 (369)
T 3zwl_B          307 EIGRVQG--------------------H----FGPLN-TVAISPQGTSYASGGEDG-FIRLHHFEK  346 (369)
T ss_dssp             EEEEEEC--------------------C----SSCEE-EEEECTTSSEEEEEETTS-EEEEEEECH
T ss_pred             chhheec--------------------c----cCcEE-EEEECCCCCEEEEEcCCC-eEEEEECcc
Confidence            6554211                    1    11122 567888887777664432 344555543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-34  Score=295.96  Aligned_cols=263  Identities=13%  Similarity=0.220  Sum_probs=211.9

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC--C
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE--D  120 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~  120 (512)
                      ...+.||.++|.+++|   +|+|++||+|+.||.|+|||+.+..           ...+..+.+|.+.|++++|+|+  +
T Consensus         2 ~~~l~gH~~~V~~l~~---s~dg~~latg~~dg~I~vwd~~~~~-----------~~~~~~l~~h~~~V~~l~~s~~~~~   67 (753)
T 3jro_A            2 VVIANAHNELIHDAVL---DYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFG   67 (753)
T ss_dssp             ------CCCCEEEECC---CSSSCCEEEEETTTEEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCTTSC
T ss_pred             eeecccCcceeEEEEE---CCCCCeEEEEECCCcEEEEecCCCC-----------CccceeccCCcCceEEEEecCCCCC
Confidence            3467899999999999   9999999999999999999987432           2446778899999999999987  9


Q ss_pred             CEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCC--CCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          121 TNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPT--NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      ++|++|+.||.|++||+.+++  .+..+.+|...|++++|+|+  + .++++|+.||.|++||++.......        
T Consensus        68 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~--------  138 (753)
T 3jro_A           68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSP--------  138 (753)
T ss_dssp             SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCC--------
T ss_pred             CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcce--------
Confidence            999999999999999999886  67788889999999999998  6 8999999999999999987643221        


Q ss_pred             ecccccccccccccccceecccccccEEEEEEee-------------cCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-------------DEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                                       .....|...|.+++|+|             ++..+++ |+.||.|++||+++........   
T Consensus       139 -----------------~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s-gs~dg~I~iwd~~~~~~~~~~~---  197 (753)
T 3jro_A          139 -----------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLE---  197 (753)
T ss_dssp             -----------------EEEECCSSCEEEEEECCCC---------CGGGCCEEE-EETTSCEEEEEEETTTTEEEEE---
T ss_pred             -----------------eEeecCCCceEEEEecCcccccccccccCCCCCEEEE-EECCCeEEEEeccCCcccceee---
Confidence                             13456788999999999             4677776 5589999999998765322110   


Q ss_pred             ccccccccccccCeeEEEeCCC---CCEEEEEecCCeEEEEEcccCCCCceEe-eeeceeceeEEEEEECCCCCEEEEec
Q 010390          264 AESSSAKETRLHGISSLSQDSN---GVFLTASCMDHRIYLYNVLQLDKGPIQH-FSGCRIESFYVKSEICPNASHILSGS  339 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~  339 (512)
                          .....|...|.+++|+|+   +.+|++++.||.|++||+.......... .........+.+++|+|++++|++|+
T Consensus       198 ----~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  273 (753)
T 3jro_A          198 ----STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (753)
T ss_dssp             ----EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred             ----eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence                145678889999999999   8999999999999999997754322211 12222345677899999999999999


Q ss_pred             CCCCEEEEecCCCC
Q 010390          340 SDGNAYVWQVNKPQ  353 (512)
Q Consensus       340 ~dg~i~iw~~~~~~  353 (512)
                      .||.|++|++....
T Consensus       274 ~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          274 GDNKVTLWKENLEG  287 (753)
T ss_dssp             SSSCEECCBCCSSS
T ss_pred             CCCEEEEEecCCCC
Confidence            99999999998644

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.9e-33  Score=261.20  Aligned_cols=296  Identities=9%  Similarity=0.096  Sum_probs=210.5

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      ....+|.+.|.+|+|   +|||++||+|+.+| ++|||++....             ...  .+...+..+++.++++.+
T Consensus        13 ~~~~~h~~~V~~v~f---s~dg~~la~g~~~~-~~iw~~~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~   73 (355)
T 3vu4_A           13 VPENHVSNPVTDYEF---NQDQSCLILSTLKS-FEIYNVHPVAH-------------IMS--QEMRHLSKVRMLHRTNYV   73 (355)
T ss_dssp             ------CCCCCEEEE---CTTSSEEEEECSSE-EEEEEETTEEE-------------EEE--EECSCCCEEEECTTSSEE
T ss_pred             cccccCCCceEEEEE---CCCCCEEEEEcCCE-EEEEecCCcce-------------eee--eecCCeEEEEEcCCCCEE
Confidence            355789999999999   99999999998775 78999865421             111  222357788899988887


Q ss_pred             E-EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC-CCCCCccccceeeecccc
Q 010390          124 L-TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK-SSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       124 ~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~  201 (512)
                      + +++.|++|+|||+.+++++..+. +...|.+++|+++   .++++ .|+.|++||+.+. +.....            
T Consensus        74 ~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~------------  136 (355)
T 3vu4_A           74 AFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDD------------  136 (355)
T ss_dssp             EEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCC------------
T ss_pred             EEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEe------------
Confidence            4 67888999999999999998887 6679999999874   34444 3789999999876 332211            


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEE-eecCCeEEEEeccCccceecccCCC----ccc-ccccccccc
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA-SAVNSIVKFWDTRNLKAQITQAWPH----AES-SSAKETRLH  275 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-g~~dg~i~iwd~~~~~~~~~~~~~~----~~~-~~~~~~~~~  275 (512)
                                     ..   ....+++++  ..++++ |+.+|.|++||++++..........    ..+ ...+..|..
T Consensus       137 ---------------~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~  196 (355)
T 3vu4_A          137 ---------------IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN  196 (355)
T ss_dssp             ---------------EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS
T ss_pred             ---------------cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC
Confidence                           11   233344555  566665 7789999999999765211100000    000 125678899


Q ss_pred             CeeEEEeCCCCCEEEEEecCCe-EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          276 GISSLSQDSNGVFLTASCMDHR-IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      .|.+++|+|++++|++++.|++ |++||+++.  ..+..+....+...+.+++|+|++++|++++.|+.|++||+.....
T Consensus       197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~  274 (355)
T 3vu4_A          197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD  274 (355)
T ss_dssp             CEEEEEECTTSSEEEEEETTCSEEEEEETTTC--CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred             ceEEEEECCCCCEEEEEeCCCCEEEEEECCCC--cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence            9999999999999999999998 999999763  3455555211345688999999999999999999999999976532


Q ss_pred             CCc-eec---------------------cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          355 DPI-KLK---------------------SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       355 ~~~-~~~---------------------~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      ... .+.                     .+......++|++++ .+|++++.||.+++|++..++.
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~-~~l~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          275 NKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES-SLVVVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             CCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS-EEEEEETTTTEEEEEEEEEETT
T ss_pred             cccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC-CEEEEEeCCCeEEEEEEEcCCC
Confidence            111 110                     112234678999999 8999999999999999977653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.1e-33  Score=271.17  Aligned_cols=267  Identities=18%  Similarity=0.285  Sum_probs=212.2

Q ss_pred             eeccccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEeCCC----------CeeeecccCcCCCEEEEEeeCCCCCeEEEE
Q 010390          101 ISDWVAHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEK----------KKCTGALMGHTGSIKSLCSHPTNSDILVSG  169 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  169 (512)
                      ......|.+.|++++|+|+ +.+|++++.||.|++||+.+          .+.+..+.+|...|.+++|+|++..+|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3456789999999999997 67899999999999999986          567778889999999999999985599999


Q ss_pred             eCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEe
Q 010390          170 SRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWD  249 (512)
Q Consensus       170 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd  249 (512)
                      +.||.|++||+........                    .......+..|...|.+++|+|++..++++++.||.|++||
T Consensus       201 ~~dg~i~vwd~~~~~~~~~--------------------~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHR--------------------VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGG--------------------EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             eCCCeEEEEeCCCCCCCCc--------------------eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            9999999999986432110                    00112345578889999999996555555577899999999


Q ss_pred             ccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE
Q 010390          250 TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI  328 (512)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (512)
                      +++......        ......|...|++++|+|++. +|++++.||.|++||++... .++..+..+  ...+.+++|
T Consensus       261 ~~~~~~~~~--------~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h--~~~v~~i~~  329 (430)
T 2xyi_A          261 TRNNNTSKP--------SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESH--KDEIFQVQW  329 (430)
T ss_dssp             TTCSCSSSC--------SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECC--SSCEEEEEE
T ss_pred             CCCCCCCcc--------eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecC--CCCEEEEEE
Confidence            997631110        003457778899999999987 78899999999999997643 345555554  356889999


Q ss_pred             CCCCC-EEEEecCCCCEEEEecCCCC-------------CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          329 CPNAS-HILSGSSDGNAYVWQVNKPQ-------------ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       329 s~~~~-~l~~g~~dg~i~iw~~~~~~-------------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      +|+++ +|++++.|+.|+|||+....             .......+|...|++++|+|+++.+|++++.||.|+||++.
T Consensus       330 sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            99985 68999999999999998732             22345668899999999999994499999999999999998


Q ss_pred             CCcc
Q 010390          395 NSRC  398 (512)
Q Consensus       395 ~~~~  398 (512)
                      ....
T Consensus       410 ~~~~  413 (430)
T 2xyi_A          410 ENVY  413 (430)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            6543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.3e-33  Score=270.23  Aligned_cols=267  Identities=12%  Similarity=0.181  Sum_probs=213.0

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe------eeecccCcCCCEEEEEeeCC---CC---CeEEE
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK------CTGALMGHTGSIKSLCSHPT---NS---DILVS  168 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~---~~---~~l~s  168 (512)
                      ...+.+|.+.|++++|+|  ++|++|+.||.|+|||+.+++      .+..+.+|...|.+++|+|+   ++   .+|++
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence            566789999999999998  799999999999999999887      77888899999999999997   34   68999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc-----cccEEEEEEe----ecCCE-EEEE
Q 010390          169 GSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA-----SMSITSVLYL----KDEVS-IATA  238 (512)
Q Consensus       169 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~  238 (512)
                      ++.||.|++||+.++......                      ....+..|     ...|.+++|+    |++.. +++ 
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~-  143 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKV----------------------IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA-  143 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCE----------------------EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE-
T ss_pred             EcCCCCEEEEEccCCcccccc----------------------cceeecccccccCCCcEEEEEEeeccCCCCceEEEE-
Confidence            999999999999876531100                      01233445     5899999999    99998 666 


Q ss_pred             eecCCeEEEEeccC------ccceecccCCCccccccc-------cccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          239 SAVNSIVKFWDTRN------LKAQITQAWPHAESSSAK-------ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       239 g~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                      ++.||.|++||+++      .+.....  +.    ..+       ..+...|.+++|+|++ +|++++.||.|++||++.
T Consensus       144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~  216 (397)
T 1sq9_A          144 TDVKGTTYIWKFHPFADESNSLTLNWS--PT----LELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  216 (397)
T ss_dssp             EETTSCEEEEEEESSSSHHHHTTTCCC--CE----EEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             EeCCCcEEEEeCCccccccccceeecc--Cc----ceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC
Confidence            55899999999998      4433200  00    011       4467789999999999 999999999999999976


Q ss_pred             CCCCceEeeee---c-eeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCCCCceecc-------------ccCC
Q 010390          306 LDKGPIQHFSG---C-RIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQADPIKLKS-------------HDGE  365 (512)
Q Consensus       306 ~~~~~~~~~~~---~-~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~-------------h~~~  365 (512)
                      .  ..+..+..   + .....+.+++|+|++++|++++.|   +.|++||+.+.+. ...+.+             |...
T Consensus       217 ~--~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  293 (397)
T 1sq9_A          217 L--RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSW  293 (397)
T ss_dssp             T--EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSC
T ss_pred             C--ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc-cceeccCcccccccccccccCCc
Confidence            3  34444444   2 004568899999999999999999   9999999988765 456777             9999


Q ss_pred             eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          366 VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       366 v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      |.+++|+|++ .+|++++.||.|++||+.+++++..+.
T Consensus       294 v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          294 VMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCC-CEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            9999999999 899999999999999999988766544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-34  Score=281.17  Aligned_cols=286  Identities=17%  Similarity=0.196  Sum_probs=215.4

Q ss_pred             ecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecc-ccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCC
Q 010390           61 TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-VAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAE  138 (512)
Q Consensus        61 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~  138 (512)
                      |+|++..+++++      .|+...              +.+..+ .+|.+.|++++|+| ++++|++|+.||+|+|||+.
T Consensus        35 f~~~~~~~~~~~------~w~~~g--------------~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~   94 (437)
T 3gre_A           35 FGPIQEIVRSPN------MGNLRG--------------KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLK   94 (437)
T ss_dssp             GCCCCCCCCCCC------GGGCCC--------------CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHH
T ss_pred             cCCccccccccc------cccccc--------------eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECc
Confidence            488888888775      376432              336667 88999999999999 99999999999999999987


Q ss_pred             C---Cee---eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC---CCCCCCCccccceeeecccccccccccc
Q 010390          139 K---KKC---TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR---CKSSPKSNCAESFVFSSAVVKGAHLLSQ  209 (512)
Q Consensus       139 ~---~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (512)
                      +   +..   ...+ .|...|.+++|+|++ .+|++++.||.|++||+.   .++........ .+..            
T Consensus        95 ~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~------------  159 (437)
T 3gre_A           95 EIIVGEVYSSSLTY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRK------------  159 (437)
T ss_dssp             HHHTTCCCSCSEEE-ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEE------------
T ss_pred             ccccCcccceeeec-cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEE------------
Confidence            6   432   2222 589999999999987 899999999999999995   33221111000 0000            


Q ss_pred             cccceeccc--ccccEEEEE--EeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc--cccCeeEEEeC
Q 010390          210 SKRVSRRKA--ASMSITSVL--YLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET--RLHGISSLSQD  283 (512)
Q Consensus       210 ~~~~~~~~~--~~~~v~~~~--~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~  283 (512)
                          ..+..  +...+.++.  +++++..+++ |+.|+.|++||+++++....           +..  |...|.+++|+
T Consensus       160 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~-----------~~~~~h~~~v~~~~~s  223 (437)
T 3gre_A          160 ----INLKNFGKNEYAVRMRAFVNEEKSLLVA-LTNLSRVIIFDIRTLERLQI-----------IENSPRHGAVSSICID  223 (437)
T ss_dssp             ----EEGGGGSSCCCEEEEEEEECSSCEEEEE-EETTSEEEEEETTTCCEEEE-----------EECCGGGCCEEEEEEC
T ss_pred             ----EEccCcccccCceEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCeeeEE-----------EccCCCCCceEEEEEC
Confidence                01111  556788887  4567777776 55899999999998877653           333  67899999999


Q ss_pred             CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC----CCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC----PNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      |++.+|++++.||.|++||++.  ...+..+.. .....+.+++|+    +++.+|++|+.||.|++||+.+++.. ..+
T Consensus       224 ~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~  299 (437)
T 3gre_A          224 EECCVLILGTTRGIIDIWDIRF--NVLIRSWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ-YAF  299 (437)
T ss_dssp             TTSCEEEEEETTSCEEEEETTT--TEEEEEEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE-EEE
T ss_pred             CCCCEEEEEcCCCeEEEEEcCC--ccEEEEEec-CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE-EEE
Confidence            9999999999999999999976  233333321 123457788554    56889999999999999999876532 222


Q ss_pred             ------------------------cc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          360 ------------------------KS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       360 ------------------------~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                                              .+  |...|++++|+ ++ .+|++|+.||.|++||+.++++...+.
T Consensus       300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          300 INSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             ESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             EcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECCCcccceEEe
Confidence                                    22  67789999999 66 799999999999999999999887654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.5e-33  Score=260.78  Aligned_cols=252  Identities=14%  Similarity=0.147  Sum_probs=207.9

Q ss_pred             ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---eeecccCcCCCEEEEEeeCCCCC-eEEEEeCCCcEEEE
Q 010390          103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK---CTGALMGHTGSIKSLCSHPTNSD-ILVSGSRDGSFAIW  178 (512)
Q Consensus       103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~dg~i~vw  178 (512)
                      ...+|.+.|++++|+|++++|++++.||.|+|||+.+++   ....+..|...|.+++|+|++ . +|++++.||.|++|
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEE
Confidence            345899999999999999999999999999999998876   344556899999999999987 8 99999999999999


Q ss_pred             eC-CCCCCCCCccccceeeecccccccccccccccceeccc--ccccEEEEEEeecCCEEEEEeecCCeEEEEeccC---
Q 010390          179 DL-RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA--ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN---  252 (512)
Q Consensus       179 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~---  252 (512)
                      |+ .++..                            ..+..  |...|.+++|+| +..+++ ++.|+.|++||+++   
T Consensus        85 d~~~~~~~----------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s-~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           85 DLIGSPSF----------------------------QALTNNEANLGICRICKYG-DDKLIA-ASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             CSSSSSSE----------------------------EECBSCCCCSCEEEEEEET-TTEEEE-EETTSEEEEECHHHHTT
T ss_pred             EeccCCce----------------------------EeccccCCCCceEEEEeCC-CCEEEE-EcCCCeEEEEccccccc
Confidence            99 75432                            13445  888999999999 777776 55899999999986   


Q ss_pred             ------ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc-CCCCceEeeeeceeceeEEE
Q 010390          253 ------LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ-LDKGPIQHFSGCRIESFYVK  325 (512)
Q Consensus       253 ------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~  325 (512)
                            .+....           . .+...|.+++|++++  +++++.|+.|++||++. ..........  .....+.+
T Consensus       135 ~~~~~~~~~~~~-----------~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~i~~  198 (342)
T 1yfq_A          135 GVIAVKNLNSNN-----------T-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEES--GLKYQIRD  198 (342)
T ss_dssp             BCEEEEESCSSS-----------S-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEEC--SCSSCEEE
T ss_pred             ccccccCCeeeE-----------E-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeec--CCCCceeE
Confidence                  443321           2 266789999999887  99999999999999976 4332222222  22346788


Q ss_pred             EEECC-CCCEEEEecCCCCEEEEecCCC-----CCCCceeccccC---------CeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390          326 SEICP-NASHILSGSSDGNAYVWQVNKP-----QADPIKLKSHDG---------EVTAVNWCPNEAGKIVTSSDDYTVRL  390 (512)
Q Consensus       326 ~~~s~-~~~~l~~g~~dg~i~iw~~~~~-----~~~~~~~~~h~~---------~v~~v~~~~~~~~~l~s~~~dg~i~v  390 (512)
                      ++|+| +++++++++.||.|++|+++..     ......+..|..         .|++++|+|++ .+|++++.||.|++
T Consensus       199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~v  277 (342)
T 1yfq_A          199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISC  277 (342)
T ss_dssp             EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEE
T ss_pred             EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEE
Confidence            99999 9999999999999999999876     344567777755         99999999999 89999999999999


Q ss_pred             EeCCCCcccccc
Q 010390          391 WSLENSRCSSMR  402 (512)
Q Consensus       391 wd~~~~~~~~~~  402 (512)
                      ||+.+++++..+
T Consensus       278 wd~~~~~~~~~~  289 (342)
T 1yfq_A          278 WNLQTRKKIKNF  289 (342)
T ss_dssp             EETTTTEEEEEC
T ss_pred             EcCccHhHhhhh
Confidence            999999877653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-33  Score=256.26  Aligned_cols=252  Identities=17%  Similarity=0.263  Sum_probs=210.2

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      +....+.+|.+.|++++| +++.+|++|+.||.|++||+.+++....+..|...|.+++|+|++ .+|++++.||.|++|
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~   86 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGV   86 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEE
Confidence            457788999999999999 999999999999999999999999999999999999999999988 899999999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      ++......                        .....+..|...|.++.|  ++..+++ ++.|+.|++||  ...... 
T Consensus        87 ~~~~~~~~------------------------~~~~~~~~~~~~i~~~~~--~~~~l~~-~~~d~~i~~~d--~~~~~~-  136 (313)
T 3odt_A           87 PLFATSGE------------------------DPLYTLIGHQGNVCSLSF--QDGVVIS-GSWDKTAKVWK--EGSLVY-  136 (313)
T ss_dssp             ETTCCTTS------------------------CC-CEECCCSSCEEEEEE--ETTEEEE-EETTSEEEEEE--TTEEEE-
T ss_pred             EeeecCCC------------------------CcccchhhcccCEEEEEe--cCCEEEE-EeCCCCEEEEc--CCcEEE-
Confidence            99764321                        112245578889999999  4666666 55899999999  222222 


Q ss_pred             ccCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  337 (512)
                                ....|...+.++.+.+ ++.++++++.||.|++||..    .....+.. .....+.+++|+|++. +++
T Consensus       137 ----------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~~~~~-~~~~~i~~~~~~~~~~-~~~  200 (313)
T 3odt_A          137 ----------NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND----KVIKTFSG-IHNDVVRHLAVVDDGH-FIS  200 (313)
T ss_dssp             ----------EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT----EEEEEECS-SCSSCEEEEEEEETTE-EEE
T ss_pred             ----------ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC----ceEEEEec-cCcccEEEEEEcCCCe-EEE
Confidence                      3566778899999988 89999999999999999942    23333333 1345688899999998 899


Q ss_pred             ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ++.||.|++||+.+++. ...+.+|...|++++|+|++  .|++++.||.|++||+.+++++..
T Consensus       201 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~  261 (313)
T 3odt_A          201 CSNDGLIKLVDMHTGDV-LRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQV  261 (313)
T ss_dssp             EETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEEE
T ss_pred             ccCCCeEEEEECCchhh-hhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeEE
Confidence            99999999999998765 46788899999999999998  589999999999999999876654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-33  Score=266.83  Aligned_cols=277  Identities=13%  Similarity=0.220  Sum_probs=212.3

Q ss_pred             ccCCcceEEEEEecCC----CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEE
Q 010390           49 EETPPLAVSFCKTSKN----SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNI  123 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~----~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l  123 (512)
                      |...|.+++|   +|+    +.+|++|+.||.|++||+.+++             .+..+.+|...|.+++|+| ++.+|
T Consensus        68 ~~~~v~~~~~---~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~l  131 (366)
T 3k26_A           68 ADENFYTCAW---TYDSNTSHPLLAVAGSRGIIRIINPITMQ-------------CIKHYVGHGNAINELKFHPRDPNLL  131 (366)
T ss_dssp             TTCCEEEEEE---EECTTTCCEEEEEEETTCEEEEECTTTCC-------------EEEEEESCCSCEEEEEECSSCTTEE
T ss_pred             CCCcEEEEEe---ccCCCCCCCEEEEecCCCEEEEEEchhce-------------EeeeecCCCCcEEEEEECCCCCCEE
Confidence            6677899988   777    7799999999999999998763             3667789999999999999 99999


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecc---cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          124 LTASGDQTIKIWDAEKKKCTGAL---MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      ++|+.||.|++||+.+++.+..+   .+|...|.+++|+|++ .+|++++.||.|++||+++++........     ..+
T Consensus       132 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~  205 (366)
T 3k26_A          132 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKES-----YDY  205 (366)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHH-----HTC
T ss_pred             EEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCcccccccee-----EEe
Confidence            99999999999999999988887   7899999999999987 89999999999999999865432211100     000


Q ss_pred             cccccc------ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc---cccccc
Q 010390          201 VKGAHL------LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE---SSSAKE  271 (512)
Q Consensus       201 ~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~  271 (512)
                      ......      ............|...|.+++|+  +..+++ ++.|+.|++||+++.............   ......
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  282 (366)
T 3k26_A          206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILS-KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD  282 (366)
T ss_dssp             CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEE-ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE
T ss_pred             cCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEE-EecCCEEEEEeCCCccccccccccCCcchheecccc
Confidence            000000      00011122344588999999998  566665 558999999999887653332222111   112456


Q ss_pred             ccccCeeEEEeCCC--CCEEEEEecCCeEEEEEcccCCCC--ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390          272 TRLHGISSLSQDSN--GVFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW  347 (512)
Q Consensus       272 ~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  347 (512)
                      .|...|.+++|+|+  +++|++++.||.|++||+......  ....+..+.....+.+++|+|++++|++++.||.|++|
T Consensus       283 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  362 (366)
T 3k26_A          283 YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW  362 (366)
T ss_dssp             CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence            67788999999999  999999999999999999775432  33355555446779999999999999999999999999


Q ss_pred             ecC
Q 010390          348 QVN  350 (512)
Q Consensus       348 ~~~  350 (512)
                      |+.
T Consensus       363 d~~  365 (366)
T 3k26_A          363 DRL  365 (366)
T ss_dssp             EC-
T ss_pred             Eec
Confidence            985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=267.13  Aligned_cols=302  Identities=12%  Similarity=0.026  Sum_probs=224.6

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCC---Cccccccccc---------------------c-------
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKL---PSFACHRENA---------------------E-------   97 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~---~~~~~~~~~~---------------------~-------   97 (512)
                      +..|+.+|+|   ++||++|+++. ++.|++||+.+++   ..........                     +       
T Consensus         3 ~~~p~~~v~~---s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (450)
T 2vdu_B            3 VIHPLQNLLT---SRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS   78 (450)
T ss_dssp             EECCCCEEEE---CSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC------------------------------
T ss_pred             ccccEEEEEe---cCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence            3467889998   99999777765 7899999998776   2111000000                     0       


Q ss_pred             -------------ccceeccccCCCcEEEEEEecCCCEE-EEEeCCCcEEEEeCC--CCeeeeccc--CcCCCEEEEEee
Q 010390           98 -------------KARISDWVAHQNAIFDLCWIKEDTNI-LTASGDQTIKIWDAE--KKKCTGALM--GHTGSIKSLCSH  159 (512)
Q Consensus        98 -------------~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~h~~~v~~l~~~  159 (512)
                                   ........+|.+.|++++|+|++++| ++|+.||.|+|||+.  +++.+..+.  .|...|.+++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence                         00011123567789999999999996 899999999999999  888888776  567899999999


Q ss_pred             CCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec---CCEEE
Q 010390          160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD---EVSIA  236 (512)
Q Consensus       160 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~  236 (512)
                      |++ .+|++++.||.|++|++.+......                       ....+.+|...|.+++|+|+   +..++
T Consensus       159 p~~-~~l~~~~~~g~v~~~~~~~~~~~~~-----------------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~  214 (450)
T 2vdu_B          159 EDD-TTVIIADKFGDVYSIDINSIPEEKF-----------------------TQEPILGHVSMLTDVHLIKDSDGHQFII  214 (450)
T ss_dssp             TTS-SEEEEEETTSEEEEEETTSCCCSSC-----------------------CCCCSEECSSCEEEEEEEECTTSCEEEE
T ss_pred             CCC-CEEEEEeCCCcEEEEecCCcccccc-----------------------cceeeecccCceEEEEEcCCCCCCcEEE
Confidence            988 8999999999999999987654320                       11134567889999999999   77777


Q ss_pred             EEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee
Q 010390          237 TASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG  316 (512)
Q Consensus       237 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  316 (512)
                      + |+.|+.|++||++++.....          ...+|...|.+++|+ ++.+|++++.|+.|++||+.+..  .+..+..
T Consensus       215 s-~~~d~~i~vwd~~~~~~~~~----------~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~  280 (450)
T 2vdu_B          215 T-SDRDEHIKISHYPQCFIVDK----------WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK--NLSTFDY  280 (450)
T ss_dssp             E-EETTSCEEEEEESCTTCEEE----------ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC--EEEEEEC
T ss_pred             E-EcCCCcEEEEECCCCceeee----------eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc--Eeeeecc
Confidence            6 55899999999998776543          144677889999999 99999999999999999997643  3333332


Q ss_pred             c-----------------------eeceeEEEEEECCCCCEEEEec-CCCCEEEEec--CCCC--CCCceeccccCCeEE
Q 010390          317 C-----------------------RIESFYVKSEICPNASHILSGS-SDGNAYVWQV--NKPQ--ADPIKLKSHDGEVTA  368 (512)
Q Consensus       317 ~-----------------------~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~--~~~~--~~~~~~~~h~~~v~~  368 (512)
                      +                       .....+..++|+|++++|++++ .|+.|++|++  ....  .....+..| +.|.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~  359 (450)
T 2vdu_B          281 NSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVIS  359 (450)
T ss_dssp             HHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEE
T ss_pred             hhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEE
Confidence            1                       1224577899999999999988 8999999999  4331  223456666 88999


Q ss_pred             EEeCCCCCCeEEEEeC-------CCcEEEEeCCC
Q 010390          369 VNWCPNEAGKIVTSSD-------DYTVRLWSLEN  395 (512)
Q Consensus       369 v~~~~~~~~~l~s~~~-------dg~i~vwd~~~  395 (512)
                      ++|+|++  ++++.+.       +..|.+|.+..
T Consensus       360 ~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          360 LSAHNDE--FQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEETTE--EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEecCCc--EEEEEecccCCCCCCcceEEEEEEc
Confidence            9999954  5555443       55688887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-34  Score=273.92  Aligned_cols=253  Identities=13%  Similarity=0.181  Sum_probs=198.3

Q ss_pred             cccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390          104 WVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR  181 (512)
Q Consensus       104 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  181 (512)
                      ++.|.+.|++++|+|++++|++|+.|+.|+|||+.++  +.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC---
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcC
Confidence            3456789999999999999999999999999999988  7888999999999999999988 899999999999999998


Q ss_pred             CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390          182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~  261 (512)
                      ++...                        ........|...|.+++|+|++..++++ +.|+.|++||+++.+...... 
T Consensus        86 ~~~~~------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~-  139 (377)
T 3dwl_C           86 PDGTW------------------------KQTLVLLRLNRAATFVRWSPNEDKFAVG-SGARVISVCYFEQENDWWVSK-  139 (377)
T ss_dssp             ---CC------------------------CCEEECCCCSSCEEEEECCTTSSCCEEE-ESSSCEEECCC-----CCCCE-
T ss_pred             CCCce------------------------eeeeEecccCCceEEEEECCCCCEEEEE-ecCCeEEEEEECCcccceeee-
Confidence            76511                        1122445688899999999999988874 479999999999876311000 


Q ss_pred             CCccccccccc-cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC----------------CCceEeeeeceeceeEE
Q 010390          262 PHAESSSAKET-RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD----------------KGPIQHFSGCRIESFYV  324 (512)
Q Consensus       262 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~~~~  324 (512)
                             .... |...|.+++|+|++++|++++.|+.|++||+....                ...+..+   .+...+.
T Consensus       140 -------~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~  209 (377)
T 3dwl_C          140 -------HLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVH  209 (377)
T ss_dssp             -------EECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEE
T ss_pred             -------EeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEE
Confidence                   2344 77899999999999999999999999999985322                1112222   3345688


Q ss_pred             EEEECCCCCEEEEecCCCCEEEEecCCCCCC---CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          325 KSEICPNASHILSGSSDGNAYVWQVNKPQAD---PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       325 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      +++|+|++++|++++.||.|++||+.+++..   ...+.+|...|.+++|+|++ .+|++++.|+.+ +|+...
T Consensus       210 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          210 AVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             EEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCC
Confidence            9999999999999999999999999987752   46788999999999999999 788888877766 666653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=270.03  Aligned_cols=257  Identities=14%  Similarity=0.186  Sum_probs=205.4

Q ss_pred             cccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEeC----CCCe------eeecccC----------cCCCEEEEEeeCCC
Q 010390          104 WVAHQNAIFDLCWIKEDT-NILTASGDQTIKIWDA----EKKK------CTGALMG----------HTGSIKSLCSHPTN  162 (512)
Q Consensus       104 ~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~----~~~~------~~~~~~~----------h~~~v~~l~~~~~~  162 (512)
                      ...|.+.|++++|+|+++ +|++|+.||.|++||+    .+++      ....+..          |.+.|++++|+|++
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            345679999999999999 9999999999999999    8887      3444433          67799999999987


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC
Q 010390          163 SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN  242 (512)
Q Consensus       163 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d  242 (512)
                       .+|++++.||.|++||.. +.                           ....+..|...|.+++|+|++..+++++ .|
T Consensus       121 -~~l~~~~~dg~i~i~~~~-~~---------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  170 (425)
T 1r5m_A          121 -NSIVTGVENGELRLWNKT-GA---------------------------LLNVLNFHRAPIVSVKWNKDGTHIISMD-VE  170 (425)
T ss_dssp             -SEEEEEETTSCEEEEETT-SC---------------------------EEEEECCCCSCEEEEEECTTSSEEEEEE-TT
T ss_pred             -CEEEEEeCCCeEEEEeCC-CC---------------------------eeeeccCCCccEEEEEECCCCCEEEEEe-cC
Confidence             899999999999999932 21                           1224556888999999999999888754 79


Q ss_pred             CeEEEEeccCccceecccCCCc---------------------------------------------cccccccccccCe
Q 010390          243 SIVKFWDTRNLKAQITQAWPHA---------------------------------------------ESSSAKETRLHGI  277 (512)
Q Consensus       243 g~i~iwd~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~i  277 (512)
                      +.|++||+.+++..........                                             ........|...|
T Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i  250 (425)
T 1r5m_A          171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI  250 (425)
T ss_dssp             CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCE
T ss_pred             CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCce
Confidence            9999999987765543322111                                             1111344677889


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCc
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI  357 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~  357 (512)
                      .+++|+|++++|++++.||.|++||+....  ....+..+  ...+.+++|+|++ ++++++.|+.|++||+.+.+. ..
T Consensus       251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~  324 (425)
T 1r5m_A          251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGN--SQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL-LA  324 (425)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEECSSSBS--CSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE-EE
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEECCCCc--cceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE-eE
Confidence            999999999999999999999999987643  34444433  3568889999999 999999999999999988765 46


Q ss_pred             eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      .+..|...|.+++|+|++ .+|++++.||.|++||+.+++
T Consensus       325 ~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          325 LSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHH
T ss_pred             ecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCc
Confidence            777899999999999999 899999999999999998776

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.6e-33  Score=265.55  Aligned_cols=261  Identities=16%  Similarity=0.220  Sum_probs=201.3

Q ss_pred             eeccccCCCcEEEEEEecCCCEEE-EEeC---CCcEEEEeCCCCeeeecc-cCcCCCEEEEEeeCCC--CCeEEEEeCCC
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNIL-TASG---DQTIKIWDAEKKKCTGAL-MGHTGSIKSLCSHPTN--SDILVSGSRDG  173 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~-s~~~---dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~--~~~l~s~~~dg  173 (512)
                      ...+.+|.+.|++++|+|++..++ +|+.   ||.|+|||+.+++..... .+|...|.+++|+|++  +.+|++++.||
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            344578999999999999997665 5655   999999999988765443 3689999999999983  48999999999


Q ss_pred             cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEE------eecCCEEEEEeecCCeEEE
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY------LKDEVSIATASAVNSIVKF  247 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~g~~dg~i~i  247 (512)
                      .|++||+.+++.                          ....+..|...|.++.|      +|++..+++ ++.||.|++
T Consensus        91 ~i~iwd~~~~~~--------------------------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~-~~~d~~i~v  143 (357)
T 3i2n_A           91 NLHIWNLEAPEM--------------------------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT-GSRDGTVKV  143 (357)
T ss_dssp             CEEEECTTSCSS--------------------------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEE-EETTSCEEE
T ss_pred             eEEEEeCCCCCc--------------------------cEEEEEecccceEEEeeccccccCCCccEEEE-EeCCCeEEE
Confidence            999999987641                          11245578889999965      578888877 558999999


Q ss_pred             EeccCccceecccCCCccccccccccccCeeEEE----eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeE
Q 010390          248 WDTRNLKAQITQAWPHAESSSAKETRLHGISSLS----QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFY  323 (512)
Q Consensus       248 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  323 (512)
                      ||+++..........+      .......+.+++    |++++.+|++++.||.|++||++....   ....  .....+
T Consensus       144 wd~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~--~~~~~v  212 (357)
T 3i2n_A          144 WDPRQKDDPVANMEPV------QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL---RWET--NIKNGV  212 (357)
T ss_dssp             ECTTSCSSCSEEECCC------TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE---EEEE--ECSSCE
T ss_pred             EeCCCCCCcceecccc------CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce---eeec--CCCCce
Confidence            9999876322211110      111133688888    789999999999999999999976432   2222  224568


Q ss_pred             EEEEECC---CCCEEEEecCCCCEEEEecCCCCCCCceec-----cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          324 VKSEICP---NASHILSGSSDGNAYVWQVNKPQADPIKLK-----SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       324 ~~~~~s~---~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      .+++|+|   ++++|++|+.||.|++||+.+.+.. ..+.     +|...|++++|+|++..+|++++.||.|++||+..
T Consensus       213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             EEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            8999999   9999999999999999999876653 3333     89999999999999833899999999999999998


Q ss_pred             Ccccc
Q 010390          396 SRCSS  400 (512)
Q Consensus       396 ~~~~~  400 (512)
                      +....
T Consensus       292 ~~~~~  296 (357)
T 3i2n_A          292 PIQRS  296 (357)
T ss_dssp             CSCC-
T ss_pred             Ccccc
Confidence            76554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.3e-33  Score=266.02  Aligned_cols=252  Identities=16%  Similarity=0.170  Sum_probs=209.0

Q ss_pred             ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC  182 (512)
Q Consensus       105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~  182 (512)
                      ..|.++|++++|+|++++|++++.|+.|++||+.+++  .+..+.+|...|.+++|+|++ .+|++++.||.|++||+++
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEET
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCC
Confidence            4589999999999999999999999999999999987  888899999999999999987 8999999999999999975


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~  262 (512)
                      ++...                         ......|...|.+++|+|++..+++++ .|+.|++||++.........  
T Consensus        84 ~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~--  135 (372)
T 1k8k_C           84 RTWKP-------------------------TLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCK--  135 (372)
T ss_dssp             TEEEE-------------------------EEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEE--
T ss_pred             Ceeee-------------------------eEEeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeee--
Confidence            43111                         112345778999999999999888754 79999999999876321110  


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC----------------CCCceEeeeeceeceeEEEE
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL----------------DKGPIQHFSGCRIESFYVKS  326 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~~~~~~~~~~  326 (512)
                           .....|...|.+++|+|++.+|++++.||.|++||++..                ....+..+..+  ...+.++
T Consensus       136 -----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~  208 (372)
T 1k8k_C          136 -----HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGV  208 (372)
T ss_dssp             -----EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEE
T ss_pred             -----eeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEE
Confidence                 023456788999999999999999999999999997521                12333444433  4568899


Q ss_pred             EECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          327 EICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      +|+|++++|++++.|+.|++||+.+++. ...+..|...|.+++|+|++ .+|+++ .|+.|++|++.+
T Consensus       209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          209 CFSANGSRVAWVSHDSTVCLADADKKMA-VATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EECSSSSEEEEEETTTEEEEEEGGGTTE-EEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEET
T ss_pred             EECCCCCEEEEEeCCCEEEEEECCCCce-eEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccC
Confidence            9999999999999999999999998775 46788899999999999998 677766 999999999988

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=9e-33  Score=266.71  Aligned_cols=266  Identities=20%  Similarity=0.289  Sum_probs=211.5

Q ss_pred             eecCCccCCcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC-
Q 010390           44 VEHHGEETPPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT-  121 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~-  121 (512)
                      ....+|.+.|++++|   +|+ +.+||+|+.||.|+|||+........   .......+..+.+|...|++++|+|++. 
T Consensus       122 ~~~~~h~~~v~~l~~---~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  195 (430)
T 2xyi_A          122 EIKINHEGEVNRARY---MPQNACVIATKTPSSDVLVFDYTKHPSKPE---PSGECQPDLRLRGHQKEGYGLSWNPNLNG  195 (430)
T ss_dssp             EEEEEESSCCSEEEE---ETTEEEEEEEECSSSCEEEEEGGGSCSSCC---TTCCCCCSEEEECCSSCCCCEEECTTSTT
T ss_pred             EEEEcCCCcEEEEEE---CCCCCcEEEEECCCCcEEEEECCCcccccC---ccccCCCcEEecCCCCCeEEEEeCCCCCC
Confidence            556789999999999   886 78999999999999999976311000   0011244677889999999999999988 


Q ss_pred             EEEEEeCCCcEEEEeCCCCee-------eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          122 NILTASGDQTIKIWDAEKKKC-------TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~-------~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      +|++|+.||.|++||+.++..       ...+.+|...|.+++|+|++..+|++++.||.|++||+++....        
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~--------  267 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--------  267 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--------
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--------
Confidence            999999999999999987432       45567899999999999976699999999999999999865311        


Q ss_pred             eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL  274 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  274 (512)
                                      ........|...|++++|+|++..++++|+.||.|++||+++......          .+..|.
T Consensus       268 ----------------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~----------~~~~h~  321 (430)
T 2xyi_A          268 ----------------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----------SFESHK  321 (430)
T ss_dssp             ----------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE----------EEECCS
T ss_pred             ----------------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE----------EeecCC
Confidence                            112234477889999999999987776688999999999997543222          456678


Q ss_pred             cCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCC------------CceEeeeeceeceeEEEEEECCCCC-EEEEecC
Q 010390          275 HGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDK------------GPIQHFSGCRIESFYVKSEICPNAS-HILSGSS  340 (512)
Q Consensus       275 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~  340 (512)
                      ..|.+++|+|++. +|++++.||.|++||+.....            ..+..+.++  ...+.+++|+|+++ +|++++.
T Consensus       322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~  399 (430)
T 2xyi_A          322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSE  399 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEET
T ss_pred             CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEEC
Confidence            8999999999985 799999999999999976332            223333333  45688999999999 8999999


Q ss_pred             CCCEEEEecCC
Q 010390          341 DGNAYVWQVNK  351 (512)
Q Consensus       341 dg~i~iw~~~~  351 (512)
                      ||.|+||++..
T Consensus       400 dg~i~iw~~~~  410 (430)
T 2xyi_A          400 DNIMQVWQMAE  410 (430)
T ss_dssp             TSEEEEEEECH
T ss_pred             CCCEEEeEccc
Confidence            99999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.9e-32  Score=261.62  Aligned_cols=265  Identities=13%  Similarity=0.212  Sum_probs=211.2

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      ..+.+|.+.|++|+|   +|+|++||+|+.||.|+|||++++.             .+..+.+|...|.+++|+  +..|
T Consensus       141 ~~~~~~~~~V~sv~f---spdg~~lasgs~Dg~v~iWd~~~~~-------------~~~~~~~h~~~v~~~s~~--~~~l  202 (420)
T 4gga_A          141 LQMEQPGEYISSVAW---IKEGNYLAVGTSSAEVQLWDVQQQK-------------RLRNMTSHSARVGSLSWN--SYIL  202 (420)
T ss_dssp             EECCSTTCCEEEEEE---CTTSSEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEE--TTEE
T ss_pred             EEecCCCCcEEEEEE---CCCCCEEEEEECCCeEEEEEcCCCc-------------EEEEEeCCCCceEEEeeC--CCEE
Confidence            456688999999999   9999999999999999999998763             377889999999998874  6799


Q ss_pred             EEEeCCCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          124 LTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      ++|+.|+.+++||.... ..+..+.+|...+..+.|+|++ .++++++.|+.+++|+...++....              
T Consensus       203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~--------------  267 (420)
T 4gga_A          203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWV--------------  267 (420)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSC--------------
T ss_pred             EEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccce--------------
Confidence            99999999999998764 4567788999999999999988 8999999999999999987653321              


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEE--eecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA--SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                               .......|...|.+++|+|.+..++++  |+.|+.|++||+.++.....            ......+.++
T Consensus       268 ---------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~------------~~~~~~v~~~  326 (420)
T 4gga_A          268 ---------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA------------VDAHSQVCSI  326 (420)
T ss_dssp             ---------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE------------EECSSCEEEE
T ss_pred             ---------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee------------eccccceeee
Confidence                     122445678899999999987766543  45799999999999876653            2234568999


Q ss_pred             EeCCCCCEEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          281 SQDSNGVFLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       281 ~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      .|++++..+++++  .|+.|++||+.+  ...+..+.+|.  ..|.+++|+|+|++|++|+.|++|+|||+..... ...
T Consensus       327 ~~~~~~~~lv~~sg~~d~~I~iwd~~~--~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~-~~~  401 (420)
T 4gga_A          327 LWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWRCFELDP-ARR  401 (420)
T ss_dssp             EEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC-C--
T ss_pred             eecCCCCeEEEEEecCCCEEEEEECCC--CcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc-cch
Confidence            9999999888765  789999999876  34566777764  5689999999999999999999999999976544 233


Q ss_pred             eccccCCeE
Q 010390          359 LKSHDGEVT  367 (512)
Q Consensus       359 ~~~h~~~v~  367 (512)
                      ...+...+.
T Consensus       402 ~~~~~~~~~  410 (420)
T 4gga_A          402 REREKASAA  410 (420)
T ss_dssp             ---------
T ss_pred             hhhccCCcc
Confidence            344444333

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-33  Score=287.47  Aligned_cols=258  Identities=19%  Similarity=0.232  Sum_probs=210.0

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC--CCeeeecccCcCCCEEEEEeeCC--CCCeEEEEeCCCcEE
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAE--KKKCTGALMGHTGSIKSLCSHPT--NSDILVSGSRDGSFA  176 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~  176 (512)
                      +..+.+|.+.|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|.+.|++++|+|+  + ++|++|+.||.|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEE
Confidence            34568999999999999999999999999999999998  55778889999999999999987  5 8999999999999


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCcc
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      +||+.++..                         ........|...|.+++|+|+  +..+++ |+.||.|++||+++..
T Consensus        81 vwd~~~~~~-------------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l~s-gs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           81 IWKEENGRW-------------------------SQIAVHAVHSASVNSVQWAPHEYGPLLLV-ASSDGKVSVVEFKENG  134 (753)
T ss_dssp             EEEEETTEE-------------------------EEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEECCSSS
T ss_pred             EEECCCCcc-------------------------cccccccCCCCCeEEEEECCCCCCCEEEE-EeCCCcEEEEEeecCC
Confidence            999876421                         122345578889999999999  777777 5589999999999874


Q ss_pred             ceecccCCCccccccccccccCeeEEEeCC-------------CCCEEEEEecCCeEEEEEcccCCCC--ceEeeeecee
Q 010390          255 AQITQAWPHAESSSAKETRLHGISSLSQDS-------------NGVFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRI  319 (512)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~  319 (512)
                      .....         ....|...|.+++|+|             ++.++++++.||.|++||++.....  ....+.+|  
T Consensus       135 ~~~~~---------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h--  203 (753)
T 3jro_A          135 TTSPI---------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--  203 (753)
T ss_dssp             CCCCE---------EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC--
T ss_pred             Cccee---------EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC--
Confidence            43222         3567778899999999             5899999999999999999765432  22333333  


Q ss_pred             ceeEEEEEECCC---CCEEEEecCCCCEEEEecCCCCC----CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          320 ESFYVKSEICPN---ASHILSGSSDGNAYVWQVNKPQA----DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       320 ~~~~~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      ...+.+++|+|+   +++|++|+.||.|++||+.++..    .......|.+.|++++|+|++ .+|++++.||.|++|+
T Consensus       204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWK  282 (753)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCB
T ss_pred             CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEe
Confidence            456889999999   89999999999999999988642    223345688999999999999 8999999999999999


Q ss_pred             CCCCc
Q 010390          393 LENSR  397 (512)
Q Consensus       393 ~~~~~  397 (512)
                      +..+.
T Consensus       283 ~~~~~  287 (753)
T 3jro_A          283 ENLEG  287 (753)
T ss_dssp             CCSSS
T ss_pred             cCCCC
Confidence            98654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.3e-33  Score=267.32  Aligned_cols=280  Identities=14%  Similarity=0.102  Sum_probs=187.8

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--------CCCEEEEEeCCCcEE
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--------EDTNILTASGDQTIK  133 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--------~~~~l~s~~~dg~i~  133 (512)
                      ++++.+||+|+.|++|+|||.+.+..        .....+..+.+|.+.|++++|+|        |+++|++|+.|++|+
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~--------~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~  169 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETI--------ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI  169 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEE--------EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCcc--------ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence            77788999999999999999887643        12234667899999999999998        789999999999999


Q ss_pred             EEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccc
Q 010390          134 IWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRV  213 (512)
Q Consensus       134 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (512)
                      |||+.++.++..+..|...|.+++|+|++.++|++++.|++|++||+++++..................  .........
T Consensus       170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~  247 (393)
T 4gq1_A          170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT--LNTLPLVNT  247 (393)
T ss_dssp             EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE--EESGGGC--
T ss_pred             EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe--cccccceee
Confidence            999999888888888999999999999886789999999999999999876544322111000000000  000001111


Q ss_pred             eecccccccEEEEEEe-ecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE
Q 010390          214 SRRKAASMSITSVLYL-KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS  292 (512)
Q Consensus       214 ~~~~~~~~~v~~~~~~-~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  292 (512)
                      ....+|...+.++.|. +++..+++ ++.|+.+++||+.......           .+..+...+..+.+.++.+.+...
T Consensus       248 ~~~~~~~~~v~~v~~~~~dg~~l~s-~s~d~~i~vwd~~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~  315 (393)
T 4gq1_A          248 CHSSGIASSLANVRWIGSDGSGILA-MCKSGAWLRWNLFANNDYN-----------EISDSTMKLGPKNLLPNVQGISLF  315 (393)
T ss_dssp             ----CCSSSCSEEEEETTTTCEEEE-ECTTSEEEEEEC------------------------------CCSCSEEEECSS
T ss_pred             eecccccccceeeeeecCCCCEEEE-EeCCCCEEEEECccCCCCc-----------eEeeecCccccEEEcccccccccc
Confidence            2334677889999997 68888776 5589999999998765443           233444555566666553322111


Q ss_pred             ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC--CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEE
Q 010390          293 CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP--NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVN  370 (512)
Q Consensus       293 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~  370 (512)
                      .                            ......+++  ++.++++|+.||.|++||+.+++. ...+.+|..+|++++
T Consensus       316 ~----------------------------~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~-~~~~~~~~~~V~sva  366 (393)
T 4gq1_A          316 P----------------------------SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS-NSIPIQLGMPIVDFC  366 (393)
T ss_dssp             C----------------------------CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC-CEEEEECSSCEEEEE
T ss_pred             C----------------------------cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE-EEEecCCCCcEEEEE
Confidence            0                            011123333  455778899999999999998876 456778889999999


Q ss_pred             eCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          371 WCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       371 ~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      |+||| ++||+++.|| +.+|.+.
T Consensus       367 fspdG-~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          367 WHQDG-SHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ECTTS-SEEEEEESSE-EEEEEEG
T ss_pred             EcCCC-CEEEEEeCCC-eEEEEEe
Confidence            99999 8999999877 6566553

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-33  Score=258.84  Aligned_cols=272  Identities=10%  Similarity=0.098  Sum_probs=203.1

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC---
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAE---  138 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~---  138 (512)
                      .+++++||+|+.||.|++||++++..             +..+.  ...|.++.|+|+   +++++.|++|++|+..   
T Consensus        45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~-------------~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~  106 (343)
T 3lrv_A           45 YYDKWVCMCRCEDGALHFTQLKDSKT-------------ITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQI  106 (343)
T ss_dssp             SEEEEEEEEEEETTEEEEEEESSSSC-------------EEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEE
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCcE-------------EEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCce
Confidence            46889999999999999999987654             22232  456778888887   9999999999999765   


Q ss_pred             ------CCeeeeccc-CcCCCEEEEEeeC--CCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390          139 ------KKKCTGALM-GHTGSIKSLCSHP--TNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ  209 (512)
Q Consensus       139 ------~~~~~~~~~-~h~~~v~~l~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (512)
                            +++.+..+. +|.+.|.+++|+|  ++ .+|++++.||.|++||+++++....                     
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~---------------------  164 (343)
T 3lrv_A          107 TILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIV---------------------  164 (343)
T ss_dssp             EEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEE---------------------
T ss_pred             EEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEE---------------------
Confidence                  444344443 6778999999999  87 8999999999999999987653110                     


Q ss_pred             cccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc-cccCeeEEEeCCCCCE
Q 010390          210 SKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET-RLHGISSLSQDSNGVF  288 (512)
Q Consensus       210 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~  288 (512)
                           ....+...+.+++|+|++..+++ |+.||.|++||+++++....          .+.. |...|.+++|+|++.+
T Consensus       165 -----~~~~~~~~i~~~~~~pdg~~las-g~~dg~i~iwd~~~~~~~~~----------~~~~~h~~~v~~l~fs~~g~~  228 (343)
T 3lrv_A          165 -----HSAKSDVEYSSGVLHKDSLLLAL-YSPDGILDVYNLSSPDQASS----------RFPVDEEAKIKEVKFADNGYW  228 (343)
T ss_dssp             -----ECCCSSCCCCEEEECTTSCEEEE-ECTTSCEEEEESSCTTSCCE----------ECCCCTTSCEEEEEECTTSSE
T ss_pred             -----EecCCCCceEEEEECCCCCEEEE-EcCCCEEEEEECCCCCCCcc----------EEeccCCCCEEEEEEeCCCCE
Confidence                 11234457999999999998887 55899999999998876521          2344 7789999999999999


Q ss_pred             EEEEecCCeEEEEEcccCCCCc-eEeeeeceeceeEEEEEECCCCCEEEEecC-CCCEEEEecCCCCCCCceeccccCCe
Q 010390          289 LTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEICPNASHILSGSS-DGNAYVWQVNKPQADPIKLKSHDGEV  366 (512)
Q Consensus       289 l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~h~~~v  366 (512)
                      |++++ ++.|++||++...... +..+..+.......+++|+|++++|++++. |+.|++|++.+..... ..    .++
T Consensus       229 l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~-~~----~~~  302 (343)
T 3lrv_A          229 MVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNW-TK----DEE  302 (343)
T ss_dssp             EEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSE-EE----EEE
T ss_pred             EEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccce-Ee----cCc
Confidence            99999 5599999998754321 111111111111146999999999999888 9999999997665421 22    578


Q ss_pred             EEEEeCC---CCCCeEEEEeCCCcEEEEeCCCC
Q 010390          367 TAVNWCP---NEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       367 ~~v~~~~---~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      ..++|.+   +. ..+++++.||.+.++-....
T Consensus       303 ~~~~~~~~~~~~-~~l~~~~~d~~~~~~~~~~~  334 (343)
T 3lrv_A          303 SALCLQSDTADF-TDMDVVCGDGGIAAILKTND  334 (343)
T ss_dssp             EECCC----CCC-CEEEEEEETTEEEEEEECSS
T ss_pred             eeEecCcccccc-ceeEEEecCCceEEEEecCC
Confidence            8899998   77 78999999999998865443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=7.3e-32  Score=258.36  Aligned_cols=255  Identities=14%  Similarity=0.208  Sum_probs=198.5

Q ss_pred             EEEEEEecCCCEEE-EEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390          111 IFDLCWIKEDTNIL-TASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS  185 (512)
Q Consensus       111 V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  185 (512)
                      ...++++|+...++ +++.||.|+||++...    +.+..+.+|.+.|++++|+|.++.+|++|+.||.|++||+.++..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            34578888765544 5788999999999654    234567889999999999994349999999999999999987643


Q ss_pred             CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                      ....                    ......+.+|...|.+++|+|++..++++++.|+.|++||+++++.....      
T Consensus       117 ~~~~--------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------  170 (402)
T 2aq5_A          117 VLPL--------------------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL------  170 (402)
T ss_dssp             SSCB--------------------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEE------
T ss_pred             cccc--------------------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEE------
Confidence            3211                    12233566889999999999998544444668999999999988765532      


Q ss_pred             ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee-eeceeceeEEEEEECCCCCEEEEe---cCC
Q 010390          266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF-SGCRIESFYVKSEICPNASHILSG---SSD  341 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g---~~d  341 (512)
                         ....|...|.+++|+|++.+|++++.||.|++||++..  ..+..+ ..+. ...+.+++|+|++++|++|   +.|
T Consensus       171 ---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~~~d  244 (402)
T 2aq5_A          171 ---GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG--TVVAEKDRPHE-GTRPVHAVFVSEGKILTTGFSRMSE  244 (402)
T ss_dssp             ---CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEECSSC-SSSCCEEEECSTTEEEEEEECTTCC
T ss_pred             ---ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC--ceeeeeccCCC-CCcceEEEEcCCCcEEEEeccCCCC
Confidence               01567788999999999999999999999999999763  234444 2332 2236679999999999999   889


Q ss_pred             CCEEEEecCCCCCCCcee-ccccCCeEEEEeCCCCCCeEE-EEeCCCcEEEEeCCCCcc
Q 010390          342 GNAYVWQVNKPQADPIKL-KSHDGEVTAVNWCPNEAGKIV-TSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       342 g~i~iw~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~  398 (512)
                      +.|++||+.+........ ..|...|.+++|+|++ .+|+ +++.||.|++||+.+++.
T Consensus       245 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          245 RQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEEEECSSTT
T ss_pred             ceEEEEcCccccCCceEEeccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCCc
Confidence            999999999876644333 3577889999999999 6665 566899999999998873

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.6e-31  Score=251.71  Aligned_cols=260  Identities=13%  Similarity=0.145  Sum_probs=193.8

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEe-----------eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVS-----------DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIF  112 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg-----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  112 (512)
                      ..+.+|.+.|.++++     +++.+++|           +.|+.+++|++.........    ...........+...+.
T Consensus        67 ~~l~~~~~~v~s~~~-----~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  137 (365)
T 4h5i_A           67 FALEDNDDSPTAIDA-----SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEF----LTSVDFDASTNADDYTK  137 (365)
T ss_dssp             EECCTTSCCCCEEEE-----ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE----EEEECSSCCCCTTCCEE
T ss_pred             EEccCCCCceEEEEe-----CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEE----eeeeceeecCCcccCEE
Confidence            457789999998877     45666655           45778999998765331111    00111222344566799


Q ss_pred             EEEEecCCCEEEEE--eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390          113 DLCWIKEDTNILTA--SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC  190 (512)
Q Consensus       113 ~l~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  190 (512)
                      +++|+|||++|+++  +.|++|+|||+.+++++..+. |...|.+++|+|++ .++++++.| .+++|+..++....   
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~---  211 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIA---  211 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEE---
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCC-ceEEeccce-eEEEEEeccCccee---
Confidence            99999999998754  478999999999999988886 77889999999998 889998855 56667665543211   


Q ss_pred             ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC----eEEEEeccCccceecccCCCccc
Q 010390          191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS----IVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                                            ......|...+.+++|+|++..+++++. |+    .+++|++..........      
T Consensus       212 ----------------------~~~~~~~~~~v~~v~fspdg~~l~~~s~-d~~~~~~i~~~~~~~~~~~~~~~------  262 (365)
T 4h5i_A          212 ----------------------RKTDFDKNWSLSKINFIADDTVLIAASL-KKGKGIVLTKISIKSGNTSVLRS------  262 (365)
T ss_dssp             ----------------------EECCCCTTEEEEEEEEEETTEEEEEEEE-SSSCCEEEEEEEEETTEEEEEEE------
T ss_pred             ----------------------eeecCCCCCCEEEEEEcCCCCEEEEEec-CCcceeEEeecccccceecceee------
Confidence                                  1123456778999999999999998664 54    68889887655432110      


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee-eeceeceeEEEEEECCCCCEEEEecCCCCEE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF-SGCRIESFYVKSEICPNASHILSGSSDGNAY  345 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  345 (512)
                       .....|...|++++|+|+|++|++|+.|+.|++||+.+.  ..+..+ .+|  ...|++++|+|||++||+|+.|++|+
T Consensus       263 -~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~--~~~~~~~~gH--~~~V~~v~fSpdg~~laS~S~D~tvr  337 (365)
T 4h5i_A          263 -KQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL--SMSKIFKQAH--SFAITEVTISPDSTYVASVSAANTIH  337 (365)
T ss_dssp             -EEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT--EEEEEETTSS--SSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             -eeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC--cEEEEecCcc--cCCEEEEEECCCCCEEEEEeCCCeEE
Confidence             035667788999999999999999999999999998753  334433 344  45689999999999999999999999


Q ss_pred             EEecCCC
Q 010390          346 VWQVNKP  352 (512)
Q Consensus       346 iw~~~~~  352 (512)
                      ||++...
T Consensus       338 vw~ip~~  344 (365)
T 4h5i_A          338 IIKLPLN  344 (365)
T ss_dssp             EEECCTT
T ss_pred             EEEcCCC
Confidence            9999654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=253.08  Aligned_cols=256  Identities=15%  Similarity=0.246  Sum_probs=198.0

Q ss_pred             cceeccccCCCcEEEEEEecC---CCEEEEEeCCCcEEEEeCCC-Ceee-ecccCcCCCEEEEEeeCCCCCeEEEEeCCC
Q 010390           99 ARISDWVAHQNAIFDLCWIKE---DTNILTASGDQTIKIWDAEK-KKCT-GALMGHTGSIKSLCSHPTNSDILVSGSRDG  173 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  173 (512)
                      ..+..+.+|.+.|++++|+|+   +++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++ .+|++++.||
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg  108 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDK  108 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCC-CEEEEEcCCC
Confidence            346778999999999999998   69999999999999999987 5444 7788899999999999987 8999999999


Q ss_pred             cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEE--eecCCEEEEEeecCCeEEEEecc
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY--LKDEVSIATASAVNSIVKFWDTR  251 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~g~~dg~i~iwd~~  251 (512)
                      .|++||+++++..                            ....|...|.+++|  ++++..+++ ++.||.|++||++
T Consensus       109 ~v~iwd~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~i~vwd~~  159 (368)
T 3mmy_A          109 TAKMWDLSSNQAI----------------------------QIAQHDAPVKTIHWIKAPNYSCVMT-GSWDKTLKFWDTR  159 (368)
T ss_dssp             EEEEEETTTTEEE----------------------------EEEECSSCEEEEEEEECSSCEEEEE-EETTSEEEEECSS
T ss_pred             cEEEEEcCCCCce----------------------------eeccccCceEEEEEEeCCCCCEEEE-ccCCCcEEEEECC
Confidence            9999999865321                            23467889999999  778877777 5589999999999


Q ss_pred             CccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC
Q 010390          252 NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN  331 (512)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  331 (512)
                      +++.....           .. ...+.++.+.  ...+++++.++.+.+|++..............  .....++++.++
T Consensus       160 ~~~~~~~~-----------~~-~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  223 (368)
T 3mmy_A          160 SSNPMMVL-----------QL-PERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPL--KHQHRCVAIFKD  223 (368)
T ss_dssp             CSSCSEEE-----------EC-SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSC--SSCEEEEEEEEC
T ss_pred             CCcEEEEE-----------ec-CCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccc--cCCCceEEEccc
Confidence            87765432           11 2245555555  45888999999999999965432111111111  122333444444


Q ss_pred             CCE----EEEecCCCCEEEEecCCCC--CCCceeccccC------------CeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          332 ASH----ILSGSSDGNAYVWQVNKPQ--ADPIKLKSHDG------------EVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       332 ~~~----l~~g~~dg~i~iw~~~~~~--~~~~~~~~h~~------------~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      ...    +++++.||.|++|++....  .....+.+|..            .|++++|+|++ .+|++++.||.|++||+
T Consensus       224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~  302 (368)
T 3mmy_A          224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDK  302 (368)
T ss_dssp             TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEET
T ss_pred             CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEEC
Confidence            433    9999999999999998763  22456677765            79999999999 89999999999999999


Q ss_pred             CCCccccc
Q 010390          394 ENSRCSSM  401 (512)
Q Consensus       394 ~~~~~~~~  401 (512)
                      .+++++..
T Consensus       303 ~~~~~~~~  310 (368)
T 3mmy_A          303 DARTKLKT  310 (368)
T ss_dssp             TTTEEEEE
T ss_pred             CCCcEEEE
Confidence            99887664

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-32  Score=260.96  Aligned_cols=249  Identities=12%  Similarity=0.123  Sum_probs=202.0

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC-----cEEEEEEecCCCE
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN-----AIFDLCWIKEDTN  122 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~s~~~~~  122 (512)
                      +|.+.|.+|+|   ||||++||+++.||.|+|||.++               .+..+. |..     .|.+++|||||++
T Consensus        83 ~~~~~V~~vaw---SPdG~~LAs~s~dg~V~iwd~~~---------------~l~~l~-~~~~~~~~sv~svafSPDG~~  143 (588)
T 2j04_A           83 QPVCYPRVCKP---SPIDDWMAVLSNNGNVSVFKDNK---------------MLTNLD-SKGNLSSRTYHCFEWNPIESS  143 (588)
T ss_dssp             SCSCCEEEEEE---CSSSSCEEEEETTSCEEEEETTE---------------EEEECC-CSSCSTTTCEEEEEECSSSSC
T ss_pred             CCCCcEEEEEE---CCCCCEEEEEeCCCcEEEEeCCc---------------eeeecc-CCCccccccEEEEEEcCCCCE
Confidence            45888999999   99999999999999999999643               244555 554     5999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCee-------eecc----cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          123 ILTASGDQTIKIWDAEKKKC-------TGAL----MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~-------~~~~----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      |++|+.||+|+|||+.+++.       +.++    .+|...|.+++|+|++   +++++.|++|++||+..+....    
T Consensus       144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~----  216 (588)
T 2j04_A          144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQP----  216 (588)
T ss_dssp             EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCC----
T ss_pred             EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcccc----
Confidence            99999999999999998753       4555    6788899999999976   8889999999999997654211    


Q ss_pred             cceeeecccccccccccccccceec-ccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRR-KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                                          ....+ ..|...|.+++|+  +..+++++  ++.|++||+.+.+...           ..
T Consensus       217 --------------------~~~tL~~~h~~~V~svaFs--g~~LASa~--~~tIkLWd~~~~~~~~-----------~~  261 (588)
T 2j04_A          217 --------------------VSRMIQNASRRKITDLKIV--DYKVVLTC--PGYVHKIDLKNYSISS-----------LK  261 (588)
T ss_dssp             --------------------CEEEEECCCSSCCCCEEEE--TTEEEEEC--SSEEEEEETTTTEEEE-----------EE
T ss_pred             --------------------ceeeecccccCcEEEEEEE--CCEEEEEe--CCeEEEEECCCCeEEE-----------EE
Confidence                                00122 2567789999999  57777654  6999999999877643           23


Q ss_pred             cccccCeeEEEe--CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          271 ETRLHGISSLSQ--DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       271 ~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                      .+|...+..++|  +|++..|++++.+|+ ++|....                    ++++|++..+++.  |+++++|+
T Consensus       262 ~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~--------------------~~~spd~~l~a~~--d~~v~lW~  318 (588)
T 2j04_A          262 TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE--------------------LHVTADNIIAPYL--EKKFKKWS  318 (588)
T ss_dssp             CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS--------------------EEEECCCSSHHHH--HHHHHHTT
T ss_pred             cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc--------------------EEECCCceEEEEc--CCEEEEEE
Confidence            368889999999  999999999999999 9999741                    5688999888776  89999999


Q ss_pred             cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC
Q 010390          349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD  384 (512)
Q Consensus       349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~  384 (512)
                      ......  ..+.+ ...|.+++|+||| +.+|+++.
T Consensus       319 ~~g~~l--~~~~~-~~~I~~va~SPdG-~~lA~~~~  350 (588)
T 2j04_A          319 TIWNEF--NNYET-TLVIHGISLSPDG-YSIAIVYD  350 (588)
T ss_dssp             TTTTSS--SSSCC-EEEEEEEEECTTS-SEEEEEEE
T ss_pred             CCCCce--eeecc-ceEEEEEEECCCC-CEEEEEEe
Confidence            865542  34444 6789999999999 89988863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6e-31  Score=251.15  Aligned_cols=274  Identities=10%  Similarity=0.101  Sum_probs=213.9

Q ss_pred             cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCeeee
Q 010390           66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI-LTASGDQTIKIWDAEKKKCTG  144 (512)
Q Consensus        66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~  144 (512)
                      .++++++.|+.|++||+.+++.             +..+..| ..+.+++|+|++++| ++++.|+.|++||+.+++.+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~-------------~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~   68 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKV-------------TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA   68 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEE-------------EEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeE-------------EEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE
Confidence            4788899999999999987632             4555555 458999999999987 577789999999999999988


Q ss_pred             cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390          145 ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT  224 (512)
Q Consensus       145 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  224 (512)
                      .+..+. .+.+++|+|++..++++++.|+.|++||+.+++...                           . ..+...+.
T Consensus        69 ~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~---------------------------~-~~~~~~~~  119 (391)
T 1l0q_A           69 TVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---------------------------T-VKTGKSPL  119 (391)
T ss_dssp             EEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---------------------------E-EECSSSEE
T ss_pred             EEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE---------------------------E-EeCCCCcc
Confidence            887655 899999999984444666678999999998654221                           1 12334689


Q ss_pred             EEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEE-EEEecCCeEEEEEc
Q 010390          225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL-TASCMDHRIYLYNV  303 (512)
Q Consensus       225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~  303 (512)
                      +++|+|+++.++++++.++.|++||+.+++.....           . ....+.+++|+|+++.| ++++.++.|++||+
T Consensus       120 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-----------~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~  187 (391)
T 1l0q_A          120 GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV-----------S-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-----------E-CCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE-----------e-cCCCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            99999999999777878999999999987765432           1 22457899999999987 56678899999998


Q ss_pred             ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec---CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeE-
Q 010390          304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS---SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKI-  379 (512)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l-  379 (512)
                      ....  ....+..   ...+..++|+|++++|++++   .++.|++||+.+++. ...+..|. .+.+++|+|++ .+| 
T Consensus       188 ~~~~--~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~~~~s~dg-~~l~  259 (391)
T 1l0q_A          188 VTNS--VIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-TARIPVGP-DPAGIAVTPDG-KKVY  259 (391)
T ss_dssp             TTTE--EEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-EEEEECCS-SEEEEEECTTS-SEEE
T ss_pred             CCCe--EEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE-EEEEecCC-CccEEEEccCC-CEEE
Confidence            7642  2222222   34567899999999998887   689999999988765 34555554 58999999999 555 


Q ss_pred             EEEeCCCcEEEEeCCCCcccccc
Q 010390          380 VTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       380 ~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      ++++.|+.|++||+.+++++..+
T Consensus       260 ~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          260 VALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEECCCCcEEEEE
Confidence            78889999999999999877654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=5.1e-31  Score=255.25  Aligned_cols=286  Identities=11%  Similarity=0.082  Sum_probs=222.0

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      ..+.+++|   +|++.++++++.++.|++||+.+++...        ......+.+|.+.|.+++|++++.++++++.|+
T Consensus       123 ~~~~~~~~---s~~~~~~~~~~~~~~i~~~d~~~g~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  191 (433)
T 3bws_A          123 FQPKSVRF---IDNTRLAIPLLEDEGMDVLDINSGQTVR--------LSPPEKYKKKLGFVETISIPEHNELWVSQMQAN  191 (433)
T ss_dssp             SCBCCCEE---SSSSEEEEEBTTSSSEEEEETTTCCEEE--------ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred             CCceEEEE---eCCCeEEEEeCCCCeEEEEECCCCeEee--------ecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence            44568888   8988899999999999999998764311        011224568999999999999999999999999


Q ss_pred             cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390          131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS  210 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (512)
                      .|++||+.+++.+..+..|...+.+++|+|++..++++++.|+.|++||+++++...                       
T Consensus       192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~-----------------------  248 (433)
T 3bws_A          192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR-----------------------  248 (433)
T ss_dssp             EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-----------------------
T ss_pred             EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE-----------------------
Confidence            999999999999999988999999999999984444666689999999998654221                       


Q ss_pred             ccceecccccccEEEEEEeecCCEEEEEee-------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390          211 KRVSRRKAASMSITSVLYLKDEVSIATASA-------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                          .. .....+.+++|+|+++.+++++.       .|+.|++||+++++...            ...+...+.+++|+
T Consensus       249 ----~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~------------~~~~~~~~~~~~~~  311 (433)
T 3bws_A          249 ----KT-DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID------------TIGPPGNKRHIVSG  311 (433)
T ss_dssp             ----EC-CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE------------EEEEEECEEEEEEC
T ss_pred             ----Ee-cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe------------eccCCCCcceEEEC
Confidence                11 12345899999999999888663       47899999999876543            22344578899999


Q ss_pred             CCCCEE-EEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC---------------CCCEEEE
Q 010390          284 SNGVFL-TASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS---------------DGNAYVW  347 (512)
Q Consensus       284 ~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---------------dg~i~iw  347 (512)
                      |+++.+ ++++.++.|++||+.+..  ....+.   ....+..++|+|++++|++++.               ||.|++|
T Consensus       312 ~~g~~l~~~~~~~~~v~v~d~~~~~--~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~  386 (433)
T 3bws_A          312 NTENKIYVSDMCCSKIEVYDLKEKK--VQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI  386 (433)
T ss_dssp             SSTTEEEEEETTTTEEEEEETTTTE--EEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred             CCCCEEEEEecCCCEEEEEECCCCc--EEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEE
Confidence            999755 566899999999987532  223332   2344678999999998888776               5799999


Q ss_pred             ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCC
Q 010390          348 QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLEN  395 (512)
Q Consensus       348 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~  395 (512)
                      |+.+++. ...+.. ...+.+++|+|++ .+|++++ .|+.|++|+++.
T Consensus       387 d~~~~~~-~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          387 DTTTDTV-KEFWEA-GNQPTGLDVSPDN-RYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             ETTTTEE-EEEEEC-SSSEEEEEECTTS-CEEEEEETTTTEEEEEEETT
T ss_pred             ECCCCcE-EEEecC-CCCCceEEEcCCC-CEEEEEECCCCeEEEEEecC
Confidence            9988765 334443 4679999999999 7777766 599999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-30  Score=250.52  Aligned_cols=306  Identities=15%  Similarity=0.190  Sum_probs=201.3

Q ss_pred             CCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC---CCE
Q 010390           47 HGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE---DTN  122 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~---~~~  122 (512)
                      .+|.++|.+++|   +| ++++|++++.||.|++||+.++..             ...+ .+...+.++.|++.   +.+
T Consensus        96 ~~~~~~v~~~~~---~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~~~~  158 (408)
T 4a11_B           96 DVHRYSVETVQW---YPHDTGMFTSSSFDKTLKVWDTNTLQT-------------ADVF-NFEETVYSHHMSPVSTKHCL  158 (408)
T ss_dssp             TCCSSCEEEEEE---CTTCTTCEEEEETTSEEEEEETTTTEE-------------EEEE-ECSSCEEEEEECSSCSSCCE
T ss_pred             ccCCCcEEEEEE---ccCCCcEEEEEeCCCeEEEeeCCCCcc-------------ceec-cCCCceeeeEeecCCCCCcE
Confidence            469999999999   88 778999999999999999987532             3333 37789999999994   459


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      |++++.|+.|++||+.+++.+..+..|...|.+++|+|++..+|++++.||.|++||++...........          
T Consensus       159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~----------  228 (408)
T 4a11_B          159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQ----------  228 (408)
T ss_dssp             EEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCT----------
T ss_pred             EEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccc----------
Confidence            9999999999999999999999999999999999999998557999999999999999876532211000          


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ  282 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (512)
                       ...............|...|.+++|+|++..+++++ .||.|++||+++++.........      .......+.....
T Consensus       229 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~  300 (408)
T 4a11_B          229 -HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSNGENTLVNYGKV------CNNSKKGLKFTVS  300 (408)
T ss_dssp             -TTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCBCCCCCCCC------CCCCSSCCCCEEC
T ss_pred             -cccccceeeccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCCCccceeccccc------cccccccceeEEe
Confidence             000001112223457888999999999999998754 79999999999877644322111      1111122223333


Q ss_pred             CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390          283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH  362 (512)
Q Consensus       283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h  362 (512)
                      ...+..+++++.++.|++||+.+.  ..+..+.++  ...+.+++|+|++++|++|+.||.|++|++.+.+... ....+
T Consensus       301 ~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~  375 (408)
T 4a11_B          301 CGCSSEFVFVPYGSTIAVYTVYSG--EQITMLKGH--YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP-DDDET  375 (408)
T ss_dssp             CSSSSCEEEEEETTEEEEEETTTC--CEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------
T ss_pred             cCCCceEEEEecCCEEEEEECcCC--cceeeeccC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC-CCCce
Confidence            344556777788999999998763  445555554  3568899999999999999999999999999876532 22222


Q ss_pred             cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          363 DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                         -....+.+.....+.+.+.|+.+++|+...
T Consensus       376 ---~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          376 ---TTKSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ---------------------------------
T ss_pred             ---EeccccccccceeecccCccCceeecCCcc
Confidence               122334443335677788899999998753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.3e-30  Score=237.26  Aligned_cols=251  Identities=14%  Similarity=0.221  Sum_probs=206.8

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      +.+.+|...|.+|+|   +|++++||+|+.||.|+|||+++++             .+..+.+|...+.++.+  ++..|
T Consensus        61 ~~~~~~~~~V~~v~~---~~~~~~l~sgs~Dg~v~iw~~~~~~-------------~~~~~~~h~~~~~~~~~--~~~~l  122 (318)
T 4ggc_A           61 LQMEQPGEYISSVAW---IKEGNYLAVGTSSAEVQLWDVQQQK-------------RLRNMTSHSARVGSLSW--NSYIL  122 (318)
T ss_dssp             EECCSTTCCEEEEEE---CTTSSEEEEEETTSEEEEEETTTTE-------------EEEEEECCSSCEEEEEE--ETTEE
T ss_pred             EEecCCCCeEEEEEE---CCCCCEEEEEECCCcEEEeecCCce-------------eEEEecCccceEEEeec--CCCEE
Confidence            456789999999999   9999999999999999999998763             37778899999887665  56799


Q ss_pred             EEEeCCCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          124 LTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      ++++.++.+++|+.... ..+..+.+|...+..+.+.+++ .+|++++.||.|++||+++++.....             
T Consensus       123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~-------------  188 (318)
T 4ggc_A          123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVP-------------  188 (318)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCC-------------
T ss_pred             EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccc-------------
Confidence            99999999999998776 4567788999999999999988 89999999999999999876543211             


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEE--EEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIA--TASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                ......+...|.++.+++++..++  .+++.++.|++||.+......            ...+...+..+
T Consensus       189 ----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~------------~~~~~~~v~~~  246 (318)
T 4ggc_A          189 ----------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS------------AVDAHSQVCSI  246 (318)
T ss_dssp             ----------SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE------------EEECSSCEEEE
T ss_pred             ----------eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc------------cccceeeeeee
Confidence                      123345677899999999877654  345678999999998876553            34455679999


Q ss_pred             EeCCCCCEEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390          281 SQDSNGVFLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       281 ~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~  352 (512)
                      .+++++..+++++  .|+.|++||+.+  ...+..+.+|.  ..|.+++|+|++++|++|+.||+|+|||+...
T Consensus       247 ~~~~~~~~~~~~sg~~d~~i~iwd~~~--~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          247 LWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             eecccccceEEEEEcCCCEEEEEECCC--CcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9999999887765  789999999876  34566777664  56899999999999999999999999998654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=5.8e-30  Score=247.70  Aligned_cols=239  Identities=18%  Similarity=0.365  Sum_probs=197.9

Q ss_pred             cccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          104 WVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       104 ~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      ..+|...|++++|  ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|  ++ .+|++|+.||.|++||+.++
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSC
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCC
Confidence            3467788999887  7999999999999999999999999999999999999999  44 89999999999999999866


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      +..                           ..+..|...|.+++|++  ..+++ |+.||.|++||+++........   
T Consensus       204 ~~~---------------------------~~~~~h~~~v~~l~~~~--~~l~s-~s~dg~i~vwd~~~~~~~~~~~---  250 (435)
T 1p22_A          204 EML---------------------------NTLIHHCEAVLHLRFNN--GMMVT-CSKDRSIAVWDMASPTDITLRR---  250 (435)
T ss_dssp             CEE---------------------------EEECCCCSCEEEEECCT--TEEEE-EETTSCEEEEECSSSSCCEEEE---
T ss_pred             cEE---------------------------EEEcCCCCcEEEEEEcC--CEEEE-eeCCCcEEEEeCCCCCCceeee---
Confidence            432                           24456788999999974  45555 6689999999998876542110   


Q ss_pred             ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390          264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN  343 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  343 (512)
                           ....|...|.++++  +++++++++.||.|++||+.+.  ..+..+.++.  ..+.++++  +++++++|+.||.
T Consensus       251 -----~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~--~~v~~~~~--~~~~l~~g~~dg~  317 (435)
T 1p22_A          251 -----VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC--EFVRTLNGHK--RGIACLQY--RDRLVVSGSSDNT  317 (435)
T ss_dssp             -----EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC--CEEEEEECCS--SCEEEEEE--ETTEEEEEETTSC
T ss_pred             -----EecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC--cEEEEEcCCC--CcEEEEEe--CCCEEEEEeCCCe
Confidence                 45677788999999  7889999999999999999763  3455555543  44667777  5789999999999


Q ss_pred             EEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       344 i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      |++||+.+++. ...+.+|...|.+++|  ++ .+|++|+.||.|++||+.+++
T Consensus       318 i~iwd~~~~~~-~~~~~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          318 IRLWDIECGAC-LRVLEGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             EEEEETTTCCE-EEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHT
T ss_pred             EEEEECCCCCE-EEEEeCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCC
Confidence            99999998766 4678899999999999  55 799999999999999997765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.4e-30  Score=241.86  Aligned_cols=243  Identities=10%  Similarity=0.102  Sum_probs=179.1

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL  180 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  180 (512)
                      +..+..|.+.|++++|+||+++|++|+.++ ++|||+.+++.......  ..+..+++.+++..++++++.|+.|++||+
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            556688999999999999999999998776 78999988876655432  247778888877444477888899999999


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc-cceecc
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL-KAQITQ  259 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~-~~~~~~  259 (512)
                      .+++...                           .+ .+...|.++.++++.  ++++  .++.|++||+.+. +.... 
T Consensus        89 ~~~~~~~---------------------------~~-~~~~~v~~v~~~~~~--~~~~--~~~~i~i~d~~~~~~~~~~-  135 (355)
T 3vu4_A           89 VKKQDVS---------------------------RI-KVDAPVKDLFLSREF--IVVS--YGDVISVFKFGNPWKRITD-  135 (355)
T ss_dssp             TTTEEEE---------------------------EE-ECSSCEEEEEECSSE--EEEE--ETTEEEEEESSTTCCBSSC-
T ss_pred             CCCcEEE---------------------------EE-ECCCceEEEEEcCCE--EEEE--EcCEEEEEECCCCceeeEE-
Confidence            8654322                           11 245589999998764  4433  3889999999987 43322 


Q ss_pred             cCCCccccccccccccCeeEEEeCCCCCEEEE--EecCCeEEEEEcccCCC-------------Cc-eEeeeeceeceeE
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTA--SCMDHRIYLYNVLQLDK-------------GP-IQHFSGCRIESFY  323 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~-------------~~-~~~~~~~~~~~~~  323 (512)
                                ...   ....+++++  .++++  |+.+|.|++||+.....             .+ ...+.+|  ...+
T Consensus       136 ----------~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v  198 (355)
T 3vu4_A          136 ----------DIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPI  198 (355)
T ss_dssp             ----------CEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCE
T ss_pred             ----------ecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCce
Confidence                      111   233455555  55665  57999999999976430             01 4455555  4568


Q ss_pred             EEEEECCCCCEEEEecCCCC-EEEEecCCCCCCCceec-c-ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          324 VKSEICPNASHILSGSSDGN-AYVWQVNKPQADPIKLK-S-HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       324 ~~~~~s~~~~~l~~g~~dg~-i~iw~~~~~~~~~~~~~-~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      .+++|+|++++|++|+.|++ |++||+.+++.. ..+. + |...|++++|+|++ .+|++++.|++|++||+..+..
T Consensus       199 ~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~~  274 (355)
T 3vu4_A          199 KMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV-REFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQD  274 (355)
T ss_dssp             EEEEECTTSSEEEEEETTCSEEEEEETTTCCEE-EEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCSC
T ss_pred             EEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCCC
Confidence            89999999999999999998 999999988764 5565 5 99999999999999 8999999999999999987653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.4e-28  Score=234.77  Aligned_cols=293  Identities=12%  Similarity=0.086  Sum_probs=213.0

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEE-EEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIF-AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~l-atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      .+...+.+|. .+.+++|   +|+|++| ++++.|+.|++||+.+++.             +..+..+. .+.+++|+|+
T Consensus        23 ~~~~~~~~~~-~~~~~~~---s~dg~~l~~~~~~d~~i~v~d~~~~~~-------------~~~~~~~~-~v~~~~~spd   84 (391)
T 1l0q_A           23 KVTATIPVGS-NPMGAVI---SPDGTKVYVANAHSNDVSIIDTATNNV-------------IATVPAGS-SPQGVAVSPD   84 (391)
T ss_dssp             EEEEEEECSS-SEEEEEE---CTTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEECSS-SEEEEEECTT
T ss_pred             eEEEEeecCC-CcceEEE---CCCCCEEEEECCCCCeEEEEECCCCeE-------------EEEEECCC-CccceEECCC
Confidence            3344445554 3678877   9999976 6777899999999977632             44444444 9999999999


Q ss_pred             CCEEEE-EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          120 DTNILT-ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       120 ~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      +++|+. ++.++.|++||+.+++.+..+..+ ..+.+++|+|++..++++++.|+.|++||+.+++...           
T Consensus        85 g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-----------  152 (391)
T 1l0q_A           85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-----------  152 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-----------
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-----------
Confidence            998864 446799999999999988887754 5789999999984444788889999999998654221           


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                      .+ .....+.+++|+|+++.+++++..++.|++||+++++....            ..+...+.
T Consensus       153 ----------------~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------------~~~~~~~~  203 (391)
T 1l0q_A          153 ----------------TV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------------VKVEAAPS  203 (391)
T ss_dssp             ----------------EE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE------------EECSSEEE
T ss_pred             ----------------EE-ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE------------EecCCCcc
Confidence                            11 12345789999999999977777899999999998765532            22345688


Q ss_pred             EEEeCCCCCEEEEEe---cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecCCCCEEEEecCCCCC
Q 010390          279 SLSQDSNGVFLTASC---MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~  354 (512)
                      +++|+|++++|++++   .++.|++||+.+.  ..+..+..+   ..+.+++|+|++++| ++++.|+.|++||+.+++.
T Consensus       204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--KITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI  278 (391)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTT--EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEECCCCCEEEEEecCcCCCcEEEEECCCC--eEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence            999999999999888   6899999998753  233334333   235779999999987 6778899999999988654


Q ss_pred             CCceeccccCCeE---EEEeCCCC---------------------CCeEEEEeCCCcEEEEeCCCCcc
Q 010390          355 DPIKLKSHDGEVT---AVNWCPNE---------------------AGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       355 ~~~~~~~h~~~v~---~v~~~~~~---------------------~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                       ...+..|..+..   .+.+.|++                     +..+...+.|..+++||+.++..
T Consensus       279 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~  345 (391)
T 1l0q_A          279 -TATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS  345 (391)
T ss_dssp             -EEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred             -EEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence             234444433211   12222211                     02356666788999999988764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=5e-29  Score=241.28  Aligned_cols=252  Identities=11%  Similarity=0.081  Sum_probs=196.8

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee-----cccCcCCCEEEEEeeCCCCCeEEEEeCCCcE
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG-----ALMGHTGSIKSLCSHPTNSDILVSGSRDGSF  175 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  175 (512)
                      +..+..+ ..+.+++|+|++.++++++.|+.|++||+.+++...     .+.+|...|.+++|++++ .++++++.|+.|
T Consensus       116 ~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v  193 (433)
T 3bws_A          116 ISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAV  193 (433)
T ss_dssp             EEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEE
T ss_pred             EEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEE
Confidence            3444444 456699999977778888889999999999998876     556788999999999877 899999999999


Q ss_pred             EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390          176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA  255 (512)
Q Consensus       176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~  255 (512)
                      ++||+++++...                           .+..|...+.+++|+|++..+++++..++.|++||+++++.
T Consensus       194 ~~~d~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          194 HVFDLKTLAYKA---------------------------TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             EEEETTTCCEEE---------------------------EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEECCCceEEE---------------------------EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence            999997654221                           33356678999999999999988787899999999998766


Q ss_pred             eecccCCCccccccccccccCeeEEEeCCCCCEEEEEe--------cCCeEEEEEcccCCCCceEeeeeceeceeEEEEE
Q 010390          256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC--------MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE  327 (512)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  327 (512)
                      ....            .....+.+++|+|+++++++++        .||.|++||+.+..  ..... .+  ...+..++
T Consensus       247 ~~~~------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~-~~--~~~~~~~~  309 (433)
T 3bws_A          247 IRKT------------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK--LIDTI-GP--PGNKRHIV  309 (433)
T ss_dssp             EEEC------------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEEE-EE--EECEEEEE
T ss_pred             EEEe------------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--EEeec-cC--CCCcceEE
Confidence            5432            1123489999999999999888        48899999987542  22222 11  23567799


Q ss_pred             ECCCCCEE-EEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC---------------CCcEEEE
Q 010390          328 ICPNASHI-LSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD---------------DYTVRLW  391 (512)
Q Consensus       328 ~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~---------------dg~i~vw  391 (512)
                      |+|+++.+ ++++.|+.|++||+.+++.. ..+ .+...+.+++|+|++ .+|++++.               ||.|++|
T Consensus       310 ~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-~~~-~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~  386 (433)
T 3bws_A          310 SGNTENKIYVSDMCCSKIEVYDLKEKKVQ-KSI-PVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVI  386 (433)
T ss_dssp             ECSSTTEEEEEETTTTEEEEEETTTTEEE-EEE-ECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEE
T ss_pred             ECCCCCEEEEEecCCCEEEEEECCCCcEE-EEe-cCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEE
Confidence            99999755 66788999999999876542 333 467889999999999 77777765               5799999


Q ss_pred             eCCCCccccc
Q 010390          392 SLENSRCSSM  401 (512)
Q Consensus       392 d~~~~~~~~~  401 (512)
                      |+.+++.+..
T Consensus       387 d~~~~~~~~~  396 (433)
T 3bws_A          387 DTTTDTVKEF  396 (433)
T ss_dssp             ETTTTEEEEE
T ss_pred             ECCCCcEEEE
Confidence            9998876554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-28  Score=237.88  Aligned_cols=258  Identities=11%  Similarity=0.057  Sum_probs=195.3

Q ss_pred             CCccCCcceEEEEEecCCCcEE-EEeeCCCcEEEEECC--CCCCccccccccccccceeccc--cCCCcEEEEEEecCCC
Q 010390           47 HGEETPPLAVSFCKTSKNSHIF-AVSDEDGYVSLFDSR--RKLPSFACHRENAEKARISDWV--AHQNAIFDLCWIKEDT  121 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~l-atg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~s~~~~  121 (512)
                      .+|.+.|.+++|   +|++++| |+|+.||.|+|||+.  ++..             +..+.  .|...|++++|+|+++
T Consensus        99 ~~~~~~v~~~~~---s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-------------~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           99 PPIYSYIRNLRL---TSDESRLIACADSDKSLLVFDVDKTSKNV-------------LKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -CCCCCEEEEEE---CTTSSEEEEEEGGGTEEEEEEECSSSSSC-------------EEEEEEEECSSCEEEEEECTTSS
T ss_pred             CccCCceEEEEE---cCCCCEEEEEECCCCeEEEEECcCCCCce-------------eeeeecccCCCCceEEEEcCCCC
Confidence            467778999998   9999996 899999999999997  5432             33443  6779999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeee----cccCcCCCEEEEEeeCC---CCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          122 NILTASGDQTIKIWDAEKKKCTG----ALMGHTGSIKSLCSHPT---NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      +|++|+.||.|++|++.+++...    .+.+|...|++++|+|+   + .+|++++.|+.|++||++++.....      
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~------  235 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDK------  235 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEE------
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeee------
Confidence            99999999999999998887554    78889999999999998   6 8999999999999999986543221      


Q ss_pred             eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc--------
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES--------  266 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~--------  266 (512)
                                          ...+|...|.+++|+ ++..++++ +.|+.|++||+++++............        
T Consensus       236 --------------------~~~~h~~~v~~~~~s-d~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  293 (450)
T 2vdu_B          236 --------------------WLFGHKHFVSSICCG-KDYLLLSA-GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHL  293 (450)
T ss_dssp             --------------------ECCCCSSCEEEEEEC-STTEEEEE-ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSB
T ss_pred             --------------------eecCCCCceEEEEEC-CCCEEEEE-eCCCeEEEEECCCCcEeeeecchhhhhhhhhhccc
Confidence                                134678899999999 99888875 489999999999887655432111000        


Q ss_pred             ------cccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCC---CceEeeeeceeceeEEEEEECCCCCEEE
Q 010390          267 ------SSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDK---GPIQHFSGCRIESFYVKSEICPNASHIL  336 (512)
Q Consensus       267 ------~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~  336 (512)
                            ..........|.+++|+|++++|++++ .++.|++|++.....   ..+..+..+   ..+.+++|+|++.+++
T Consensus       294 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~  370 (450)
T 2vdu_B          294 APPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVT  370 (450)
T ss_dssp             C----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEE
T ss_pred             ccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEE
Confidence                  000012345689999999999999999 899999999922222   233334433   5688999999654444


Q ss_pred             EecC------CCCEEEEecCCC
Q 010390          337 SGSS------DGNAYVWQVNKP  352 (512)
Q Consensus       337 ~g~~------dg~i~iw~~~~~  352 (512)
                      +++.      +..|.+|.+...
T Consensus       371 ~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          371 LDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             ECCTTCCSSCCCSEEEEEEETT
T ss_pred             EecccCCCCCCcceEEEEEEcC
Confidence            4443      455888877543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.1e-30  Score=246.88  Aligned_cols=321  Identities=11%  Similarity=0.063  Sum_probs=177.0

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccc----------------cccceeccccCCCcEEEE
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENA----------------EKARISDWVAHQNAIFDL  114 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~~~~~~~~h~~~V~~l  114 (512)
                      ..++++.|+..+|++..|++++.++.|.+|+...............                ..........|...+...
T Consensus        16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (393)
T 4gq1_A           16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN   95 (393)
T ss_dssp             CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred             CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence            4567888876677665444444588899998653322110000000                000011112233334444


Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCCCCee-----eecccCcCCCEEEEEeeC--------CCCCeEEEEeCCCcEEEEeCC
Q 010390          115 CWIKEDTNILTASGDQTIKIWDAEKKKC-----TGALMGHTGSIKSLCSHP--------TNSDILVSGSRDGSFAIWDLR  181 (512)
Q Consensus       115 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~--------~~~~~l~s~~~dg~i~vwd~~  181 (512)
                      .+.+++.+|++|+.|++|+|||+.+++.     +..+.+|.+.|++++|+|        ++ ++|++++.|++|++||++
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEE
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECC
Confidence            4455677899999999999999988754     456789999999999997        45 899999999999999997


Q ss_pred             CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390          182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~  261 (512)
                      ++..                           ......|...+.+++|+|++..++++|+.|+.|++||+++++.......
T Consensus       175 ~~~~---------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~  227 (393)
T 4gq1_A          175 DEGP---------------------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ  227 (393)
T ss_dssp             TTEE---------------------------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred             CCce---------------------------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence            5432                           2244567889999999999887666688999999999998765433211


Q ss_pred             CCc--------------cccccccccccCeeEEEeC-CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEE
Q 010390          262 PHA--------------ESSSAKETRLHGISSLSQD-SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKS  326 (512)
Q Consensus       262 ~~~--------------~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  326 (512)
                      ...              ........|...+.++.|. ++++.|++++.|+.+++||+.....  .               
T Consensus       228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~--~---------------  290 (393)
T 4gq1_A          228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND--Y---------------  290 (393)
T ss_dssp             ---CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------
T ss_pred             cCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC--C---------------
Confidence            100              0000122334445555553 4555555555555555555432110  0               


Q ss_pred             EECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCcc
Q 010390          327 EICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSS  406 (512)
Q Consensus       327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  406 (512)
                            ..+..    ....++....... ......+...+..+.+.+.+..++++|+.||.|++||+.++++.....   
T Consensus       291 ------~~l~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~---  356 (393)
T 4gq1_A          291 ------NEISD----STMKLGPKNLLPN-VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI---  356 (393)
T ss_dssp             -----------------------CCSCS-EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE---
T ss_pred             ------ceEee----ecCccccEEEccc-cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec---
Confidence                  00000    0011111110000 111222222233333333332467788899999999999887654311   


Q ss_pred             ccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390          407 VRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD  452 (512)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  452 (512)
                                       ..+..    +. .++|+|||+++++++..
T Consensus       357 -----------------~~~~~----V~-svafspdG~~LA~as~~  380 (393)
T 4gq1_A          357 -----------------QLGMP----IV-DFCWHQDGSHLAIATEG  380 (393)
T ss_dssp             -----------------ECSSC----EE-EEEECTTSSEEEEEESS
T ss_pred             -----------------CCCCc----EE-EEEEcCCCCEEEEEeCC
Confidence                             11111    22 67888898888877543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.8e-30  Score=237.95  Aligned_cols=244  Identities=9%  Similarity=0.066  Sum_probs=180.9

Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       115 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      .+.+++.+|++|+.||+|++||+.+++.+..+.  ...|.++.|+|.    +++++.|++|++|+..........     
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~-----  111 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDS-----  111 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEET-----
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeec-----
Confidence            444578899999999999999999998887776  457888888885    999999999999998642100000     


Q ss_pred             eeecccccccccccccc-cceecccccccEEEEEEee--cCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390          195 VFSSAVVKGAHLLSQSK-RVSRRKAASMSITSVLYLK--DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE  271 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~--~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  271 (512)
                                   .... .......|...|.+++|+|  ++..+++ ++.||.|++||+++++.....          ..
T Consensus       112 -------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~s~dg~i~~wd~~~~~~~~~~----------~~  167 (343)
T 3lrv_A          112 -------------KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIW-ADNRGTIGFQSYEDDSQYIVH----------SA  167 (343)
T ss_dssp             -------------TTCCEEEEEECCCSSCEEEEECCC---CCEEEE-EETTCCEEEEESSSSCEEEEE----------CC
T ss_pred             -------------CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEE-EeCCCcEEEEECCCCcEEEEE----------ec
Confidence                         0001 0112225567899999999  9988887 448999999999988764321          22


Q ss_pred             ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390          272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK  351 (512)
Q Consensus       272 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~  351 (512)
                      .+...+.+++|+|++.+|++|+.||.|++||+++.... ...+.. .+...+.+++|+|++.+|++++ |+.|++||+++
T Consensus       168 ~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~  244 (343)
T 3lrv_A          168 KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-SSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK  244 (343)
T ss_dssp             CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-CEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-ccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence            34456999999999999999999999999999875432 133443 1246789999999999999999 55999999998


Q ss_pred             CCCC--CceeccccCCeE--EEEeCCCCCCeEEEEeC-CCcEEEEeCCCCc
Q 010390          352 PQAD--PIKLKSHDGEVT--AVNWCPNEAGKIVTSSD-DYTVRLWSLENSR  397 (512)
Q Consensus       352 ~~~~--~~~~~~h~~~v~--~v~~~~~~~~~l~s~~~-dg~i~vwd~~~~~  397 (512)
                      .+..  ...+..|...+.  +++|+|++ .+|++++. |+.|++|++..+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          245 DVGTLAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             STTCBSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTT
T ss_pred             CCcceeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccc
Confidence            7653  112223444444  69999999 89999988 9999999997654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2.6e-28  Score=218.10  Aligned_cols=284  Identities=10%  Similarity=0.144  Sum_probs=172.8

Q ss_pred             ceEEEEEecCCCc---EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE-EeCC
Q 010390           54 LAVSFCKTSKNSH---IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT-ASGD  129 (512)
Q Consensus        54 ~~v~~~~~s~~~~---~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~d  129 (512)
                      ..++.++|-..|.   -+++++ +..|++|+..+..          .-+++.+++.|+.+|..+.+.||..-|+. +-..
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  108 (356)
T 2w18_A           40 VDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAW----------QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN  108 (356)
T ss_dssp             EEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSS----------BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS
T ss_pred             EEEeeeeeccCCCCccEEEEec-cceEEEcccCCCc----------cceeeEEEeccCceeEEEEEcCcccceeeeeecc
Confidence            3445555554443   567777 5589999988752          12447788888888887777775443332 1111


Q ss_pred             -CcEEEEeC--CCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEe--CCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          130 -QTIKIWDA--EKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGS--RDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       130 -g~i~iwd~--~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                       ..-.|+-+  ...    .....-.+|...|..+   +++ +++.+++  .|+.|++|++....                
T Consensus       109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g-~lv~ss~~g~d~~V~~~~~s~dG----------------  168 (356)
T 2w18_A          109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKR-RLVSSSGTLSDQQVEVMTFAEDG----------------  168 (356)
T ss_dssp             SSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTT-EEEEEESSSTTCEEEEEEECTTS----------------
T ss_pred             ccccceEEEEECCCccccccEEEeCCCeEEEEec---CCC-cEEEecccCCCCcEEEEEECCCC----------------
Confidence             11111111  111    1111112343344443   333 4555533  47888888874311                


Q ss_pred             ccccccccccccceecccccccEEEEEEee---cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLK---DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                +.......|...+..++|++   ++..+++ |+.|++|++||+.+++...+...        ...+...+
T Consensus       169 ----------~~~~s~~~~~~~v~~l~fs~~~g~~~~LaS-gS~D~TIkIWDl~TGk~l~tL~g--------~~~~v~~v  229 (356)
T 2w18_A          169 ----------GGKENQFLMPPEETILTFAEVQGMQEALLG-TTIMNNIVIWNLKTGQLLKKMHI--------DDSYQASV  229 (356)
T ss_dssp             ----------CEEEEEEECCCSSCEEEEEEEETSTTEEEE-EETTSEEEEEETTTCCEEEEEEC--------CC---CCC
T ss_pred             ----------ceeeeeccCCCceeeEEeeccCCCCceEEE-ecCCCcEEEEECCCCcEEEEEcC--------CCcceeee
Confidence                      11223446777888888888   5566666 66899999999999987765321        11122467


Q ss_pred             eEEEeCCCCCEE------------EEEecCCeEEEEEcccCCCCceEee---eeceeceeEEEEEECCCCCEEEEecCCC
Q 010390          278 SSLSQDSNGVFL------------TASCMDHRIYLYNVLQLDKGPIQHF---SGCRIESFYVKSEICPNASHILSGSSDG  342 (512)
Q Consensus       278 ~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~dg  342 (512)
                      .+++|+|+|.++            ++|+.|++|++||..+.....+..+   .++..  .+.+..+  ++.++++|+.|+
T Consensus       230 ~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~--~~lsg~~--sg~~lASgS~Dg  305 (356)
T 2w18_A          230 CHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAG--RFLEGDV--KDHCAAAILTSG  305 (356)
T ss_dssp             EEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCC--CEEEEEE--ETTEEEEEETTS
T ss_pred             EEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcc--eeEcccc--CCCEEEEEcCCC
Confidence            788999999876            5677899999999865422111111   12211  1222233  377899999999


Q ss_pred             CEEEEecCCCCCCCceeccccCCeE-EEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          343 NAYVWQVNKPQADPIKLKSHDGEVT-AVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       343 ~i~iw~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      +|+|||+.+++. ..++.+|...+. +++|+||+ .+|++|+.|++|+|||+
T Consensus       306 TIkIWDl~tGk~-l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          306 TIAIWDLLLGQC-TALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CEEEEETTTCSE-EEEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred             cEEEEECCCCcE-EEEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecC
Confidence            999999999886 467888877655 68999999 89999999999999996

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.1e-28  Score=231.22  Aligned_cols=312  Identities=14%  Similarity=0.123  Sum_probs=201.2

Q ss_pred             eccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCC-CCCeEEEEeCCCcEE
Q 010390          102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPT-NSDILVSGSRDGSFA  176 (512)
Q Consensus       102 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~  176 (512)
                      ..+.+|.+.|++++|+|++++|++|+.||.|+|||+.++    +....+.+|...|++++|+|. ++.+|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            345799999999999999999999999999999999876    466777899999999999994 238999999999999


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCcc
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLK  254 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~  254 (512)
                      +||++.+.......                  .......+..|...|.+++|+|+  +..+++ ++.||.|++||+++.+
T Consensus        85 vwd~~~~~~~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           85 LWEEDPDQEECSGR------------------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC-LGNDGILRLYDALEPS  145 (351)
T ss_dssp             EEEECTTSCTTSSC------------------SEEEEEEECCCSSCEEEEEECCGGGCSEEEE-EETTCEEEEEECSSTT
T ss_pred             EEecCCCccccccc------------------CcceeeeecccCCceeEEEEcCCCCCcEEEE-ecCCCcEEEecCCChH
Confidence            99998765322110                  01223355678899999999999  888887 4589999999999876


Q ss_pred             ceecccCCCc--cccccccccccCeeEEEeCCC---CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC
Q 010390          255 AQITQAWPHA--ESSSAKETRLHGISSLSQDSN---GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC  329 (512)
Q Consensus       255 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s  329 (512)
                      ..........  ........+...+.+++|+|+   +.++++++.++.+.+|+...........+.++  ...+.+++|+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~i~~~~~~  223 (351)
T 3f3f_A          146 DLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH--KSLIRSISWA  223 (351)
T ss_dssp             CTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC--CSCEEEEEEC
T ss_pred             HhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC--CcceeEEEEC
Confidence            5433211110  000122356778999999997   89999999999998888755433334444444  4568899999


Q ss_pred             CCC----CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe----CCCcEEEEeCCCCccccc
Q 010390          330 PNA----SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS----DDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       330 ~~~----~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~----~dg~i~vwd~~~~~~~~~  401 (512)
                      |++    ++|++|+.||.|++||+....... ....+...+....+.+.. ..+..+.    .+..+.+|+....+.+..
T Consensus       224 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (351)
T 3f3f_A          224 PSIGRWYQLIATGCKDGRIRIFKITEKLSPL-ASEESLTNSNMFDNSADV-DMDAQGRSDSNTEEKAELQSNLQVELLSE  301 (351)
T ss_dssp             CCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEE
T ss_pred             CCCCCcceEEEEEcCCCeEEEEeCCCCcCcc-ccCCcccceeccCCCccc-ccccccccccccceeeeecccccccEEEE
Confidence            998    899999999999999998765432 233333344444444443 3333333    233444444433333222


Q ss_pred             ccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCc
Q 010390          402 RSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP  462 (512)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  462 (512)
                      +.                        .+...+. .++|+|++++++.++.. ..+.+|...
T Consensus       302 ~~------------------------~h~~~v~-~~~~s~~~~~l~s~~~d-g~v~iw~~~  336 (351)
T 3f3f_A          302 HD------------------------DHNGEVW-SVSWNLTGTILSSAGDD-GKVRLWKAT  336 (351)
T ss_dssp             EC------------------------TTSSCEE-EEEECSSSCCEEEEETT-SCEEEEEEC
T ss_pred             Ee------------------------cccccEE-EEEEcCCCCEEEEecCC-CcEEEEecC
Confidence            11                        1111222 66788888877766533 234445444

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=6.8e-27  Score=230.50  Aligned_cols=297  Identities=11%  Similarity=0.079  Sum_probs=221.2

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEEC--CCCCCccccccccccccceeccccCCCcEEEEEEec----CCCEEEEE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDS--RRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK----EDTNILTA  126 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~----~~~~l~s~  126 (512)
                      +.+++|   +|||++|++++.|+.|.+||+  .+..             .+.++. +...+..++|+|    +|++|+++
T Consensus       181 ~~~v~~---spdg~~l~v~~~d~~V~v~D~~~~t~~-------------~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~  243 (543)
T 1nir_A          181 VHISRM---SASGRYLLVIGRDARIDMIDLWAKEPT-------------KVAEIK-IGIEARSVESSKFKGYEDRYTIAG  243 (543)
T ss_dssp             EEEEEE---CTTSCEEEEEETTSEEEEEETTSSSCE-------------EEEEEE-CCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             cceEEE---CCCCCEEEEECCCCeEEEEECcCCCCc-------------EEEEEe-cCCCcceEEeCCCcCCCCCEEEEE
Confidence            666777   999999999999999999999  5442             244444 456789999999    99999988


Q ss_pred             eC-CCcEEEEeCCCCeeeecccC----------cCC-CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          127 SG-DQTIKIWDAEKKKCTGALMG----------HTG-SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       127 ~~-dg~i~iwd~~~~~~~~~~~~----------h~~-~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      +. +++|.|||..+++++..+..          |.. .+.++.++|++..++++...++.|.+||+.+.+....      
T Consensus       244 ~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~------  317 (543)
T 1nir_A          244 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV------  317 (543)
T ss_dssp             EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE------
T ss_pred             EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee------
Confidence            85 89999999999998887754          223 7899999998877888888999999999986543210      


Q ss_pred             eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL  274 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  274 (512)
                                          ....+...+.++.|+|+++++++++..++.|.+||+.+++........       ...|.
T Consensus       318 --------------------~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g-------~~ph~  370 (543)
T 1nir_A          318 --------------------TSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG-------KTPHP  370 (543)
T ss_dssp             --------------------EEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS-------SSBCC
T ss_pred             --------------------EEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC-------CCCCC
Confidence                                011234467789999999999887777899999999998766543210       11122


Q ss_pred             cCeeEEEeCCC-CCEEEEEe-cCCeEEEEEcccCC-----CCceEeeeeceeceeEEEEEECCCCCEEEEec-------C
Q 010390          275 HGISSLSQDSN-GVFLTASC-MDHRIYLYNVLQLD-----KGPIQHFSGCRIESFYVKSEICPNASHILSGS-------S  340 (512)
Q Consensus       275 ~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-------~  340 (512)
                      .....+ ++|+ +..++++. .|++|.+||+....     .+.+..+..+..  ....++++|++++|++++       .
T Consensus       371 g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v~~~pdg~~l~v~~~~~~~~~~  447 (543)
T 1nir_A          371 GRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFIKTHPKSSHLYVDTTFNPDARI  447 (543)
T ss_dssp             TTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred             CCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEEEcCCCCCcEEEecCCCCCccc
Confidence            222222 4676 55666665 57999999987622     345566665532  234588999999999987       2


Q ss_pred             CCCEEEEecCCCCCCCcee--------ccccCCeEEEEeCCCCCCeEEEE-----eCCCcEEEEeCCCCccccccc
Q 010390          341 DGNAYVWQVNKPQADPIKL--------KSHDGEVTAVNWCPNEAGKIVTS-----SDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       341 dg~i~iw~~~~~~~~~~~~--------~~h~~~v~~v~~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      +++|.+||+.+.+.....+        ..+...+..+.|+|+| ..|+.+     +.|+.|.|||..+++++.++.
T Consensus       448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g-~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG-DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSS-SEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCC-CEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            6799999999887653443        3557789999999999 555544     247999999999999887755

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=6.5e-27  Score=230.67  Aligned_cols=291  Identities=10%  Similarity=0.074  Sum_probs=213.7

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeC--CC
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDA--EK  139 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~--~~  139 (512)
                      +|++.++++++.|+.|.+||..+++.             +.++..+.. +..++|+|++++|++++.|++|.+||+  .+
T Consensus       146 ~p~~~~~vs~~~d~~V~v~D~~t~~~-------------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t  211 (543)
T 1nir_A          146 DLPNLFSVTLRDAGQIALVDGDSKKI-------------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE  211 (543)
T ss_dssp             CGGGEEEEEEGGGTEEEEEETTTCCE-------------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             CCCCEEEEEEcCCCeEEEEECCCceE-------------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC
Confidence            89999999999999999999987643             455553333 899999999999999999999999999  88


Q ss_pred             CeeeecccCcCCCEEEEEeeC----CCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccce
Q 010390          140 KKCTGALMGHTGSIKSLCSHP----TNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVS  214 (512)
Q Consensus       140 ~~~~~~~~~h~~~v~~l~~~~----~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (512)
                      ++++.++. +...+..++|+|    ++ +++++++ .+++|.+||..+.+..........                 ...
T Consensus       212 ~~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~-----------------~~~  272 (543)
T 1nir_A          212 PTKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM-----------------TVD  272 (543)
T ss_dssp             CEEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEE-----------------CSS
T ss_pred             CcEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCc-----------------ccC
Confidence            88888887 455789999999    88 7777776 589999999887654332211000                 000


Q ss_pred             ecccc-cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe
Q 010390          215 RRKAA-SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC  293 (512)
Q Consensus       215 ~~~~~-~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  293 (512)
                      ....| ...+.++.+++++..++++...++.|.+||..+.+....          ....+...+..+.|+|+|++|++++
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~----------~~i~~~~~~~~~~~spdg~~l~va~  342 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV----------TSIGAAPFLHDGGWDSSHRYFMTAA  342 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE----------EEEECCSSCCCEEECTTSCEEEEEE
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee----------EEeccCcCccCceECCCCCEEEEEe
Confidence            00012 237889999999999888888899999999987654321          1112345578899999999877665


Q ss_pred             -cCCeEEEEEcccCCCCceEeeeec--eeceeEEEEEECCC-CCEEEEec-CCCCEEEEecCCC------CCCCceeccc
Q 010390          294 -MDHRIYLYNVLQLDKGPIQHFSGC--RIESFYVKSEICPN-ASHILSGS-SDGNAYVWQVNKP------QADPIKLKSH  362 (512)
Q Consensus       294 -~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~-~~~l~~g~-~dg~i~iw~~~~~------~~~~~~~~~h  362 (512)
                       .+++|.+||..+.+  .+..+...  .+......+ ++|+ +..++++. .|++|.+||+.+.      ...+..+..|
T Consensus       343 ~~~~~v~v~D~~tg~--l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~  419 (543)
T 1nir_A          343 NNSNKVAVIDSKDRR--LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ  419 (543)
T ss_dssp             GGGTEEEEEETTTTE--EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             cCCCeEEEEECCCCe--EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence             58999999987643  33333321  111111122 4677 66667765 5799999999872      2235677888


Q ss_pred             cCCeEEEEeCCCCCCeEEEEe-------CCCcEEEEeCCCCccc
Q 010390          363 DGEVTAVNWCPNEAGKIVTSS-------DDYTVRLWSLENSRCS  399 (512)
Q Consensus       363 ~~~v~~v~~~~~~~~~l~s~~-------~dg~i~vwd~~~~~~~  399 (512)
                      .+.+..++++|++ ++|++++       .+++|.|||+.++++.
T Consensus       420 g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          420 GGGSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             CSCCCCEECCTTC-CEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             CCCceEEEcCCCC-CcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            8889999999999 7888887       2779999999999865

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=2.4e-27  Score=226.97  Aligned_cols=281  Identities=12%  Similarity=0.005  Sum_probs=207.5

Q ss_pred             EEEEEecCCCc-EEEEee----CCC----cEEEEEC--CCCCCccccccccccccceeccccCCCcEEEEEEec------
Q 010390           56 VSFCKTSKNSH-IFAVSD----EDG----YVSLFDS--RRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK------  118 (512)
Q Consensus        56 v~~~~~s~~~~-~latg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~------  118 (512)
                      +.|..|++.|. ++++|+    .+|    .|+|||+  .+++..           ....+.+|...+..+++++      
T Consensus        65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~d~~~~  133 (415)
T 2hqs_A           65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-----------AQNSYKVNKQWLRYAGHTASDEVFE  133 (415)
T ss_dssp             CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-----------EEEEEEECGGGHHHHHHHHHHHHHH
T ss_pred             cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-----------eeeEEEcChhHHHHHHHHHHHHHHH
Confidence            33444477774 776875    567    8999999  766421           1244677777777777664      


Q ss_pred             --------CCCEEEEEeCC------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC---cEEEEeCC
Q 010390          119 --------EDTNILTASGD------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG---SFAIWDLR  181 (512)
Q Consensus       119 --------~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~  181 (512)
                              .+..|+.++.+      +.|++||+. +.....+..|...|.+++|+|++ +.|++++.|+   .|++||+.
T Consensus       134 ~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~  211 (415)
T 2hqs_A          134 KLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLA  211 (415)
T ss_dssp             HHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETT
T ss_pred             HHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECC
Confidence                    25677766554      799999997 45567777899999999999998 8899888875   99999998


Q ss_pred             CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecc
Q 010390          182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQ  259 (512)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~  259 (512)
                      +++..                            .+..+...+.+++|+|+++.++++++.++  .|++||+.+++..   
T Consensus       212 tg~~~----------------------------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~---  260 (415)
T 2hqs_A          212 NGAVR----------------------------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---  260 (415)
T ss_dssp             TCCEE----------------------------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred             CCcEE----------------------------EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE---
Confidence            65421                            22345568999999999999987665655  4999999886643   


Q ss_pred             cCCCccccccccccccCeeEEEeCCCCCEEEEEec-CC--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM-DH--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL  336 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  336 (512)
                               .+..+...+.+++|+|||++|++++. ++  .|++||+....   ...+..+  ...+..++|+|+|++|+
T Consensus       261 ---------~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~---~~~l~~~--~~~~~~~~~spdG~~l~  326 (415)
T 2hqs_A          261 ---------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA---PQRITWE--GSQNQDADVSSDGKFMV  326 (415)
T ss_dssp             ---------ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC---CEECCCS--SSEEEEEEECTTSSEEE
T ss_pred             ---------eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC---EEEEecC--CCcccCeEECCCCCEEE
Confidence                     24445567999999999999988876 44  67778876543   2222222  23566799999999998


Q ss_pred             EecCC---CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC---cEEEEeCCCCcc
Q 010390          337 SGSSD---GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY---TVRLWSLENSRC  398 (512)
Q Consensus       337 ~g~~d---g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~  398 (512)
                      +++.+   ..|++||+.+++.  ..+..|. .+.+++|+|++ ++|++++.|+   .|++||+..+..
T Consensus       327 ~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg-~~l~~~s~~~~~~~l~~~d~~g~~~  390 (415)
T 2hqs_A          327 MVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGRFK  390 (415)
T ss_dssp             EEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             EEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCC-CEEEEEEcCCCccEEEEEECCCCcE
Confidence            87764   5799999988765  3455554 89999999999 7888888776   899999985543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=2e-26  Score=220.55  Aligned_cols=265  Identities=13%  Similarity=0.075  Sum_probs=201.3

Q ss_pred             eecCCccCCcceEEEEEecC--------------CCcEEEEeeCC------CcEEEEECCCCCCccccccccccccceec
Q 010390           44 VEHHGEETPPLAVSFCKTSK--------------NSHIFAVSDED------GYVSLFDSRRKLPSFACHRENAEKARISD  103 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~--------------~~~~latg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~  103 (512)
                      ..+.+|...+..+++   ++              .+..++.++.+      +.|++||++...              ...
T Consensus       111 ~~~~~~~~~~~~~~~---~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~--------------~~~  173 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGH---TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN--------------QFV  173 (415)
T ss_dssp             EEEEECGGGHHHHHH---HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS--------------CEE
T ss_pred             eEEEcChhHHHHHHH---HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC--------------CEE
Confidence            446677777777666   43              25566665543      799999987532              455


Q ss_pred             cccCCCcEEEEEEecCCCEEEEEeCCC---cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEE-EEeCCCc--EEE
Q 010390          104 WVAHQNAIFDLCWIKEDTNILTASGDQ---TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV-SGSRDGS--FAI  177 (512)
Q Consensus       104 ~~~h~~~V~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~~~dg~--i~v  177 (512)
                      +.+|...|.+++|+|+|++|++++.++   .|++||+.+++.. .+..|...+.+++|+|++ +.|+ +++.|+.  |++
T Consensus       174 l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~  251 (415)
T 2hqs_A          174 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYV  251 (415)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEE
T ss_pred             EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCC-CEEEEEEecCCCceEEE
Confidence            678899999999999999999999875   9999999998775 466688899999999998 5555 7776665  999


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccc
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKA  255 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~  255 (512)
                      ||+.+++.                            ..+..+...+.+++|+|+++.+++++..++  .|.+||+.+++.
T Consensus       252 ~d~~~~~~----------------------------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~  303 (415)
T 2hqs_A          252 MDLASGQI----------------------------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  303 (415)
T ss_dssp             EETTTCCE----------------------------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             EECCCCCE----------------------------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence            99876542                            123355668999999999999988764455  677888887653


Q ss_pred             eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390          256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA  332 (512)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  332 (512)
                      ..            ...+...+.+++|+|+|++|++++.+   ..|++||+.+...   ..+..+.   .+..++|+|+|
T Consensus       304 ~~------------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l~~~~---~~~~~~~spdg  365 (415)
T 2hqs_A          304 QR------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSSTF---LDETPSLAPNG  365 (415)
T ss_dssp             EE------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---EECCCSS---SCEEEEECTTS
T ss_pred             EE------------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---EEecCCC---CcCCeEEcCCC
Confidence            32            22334568899999999999988864   5899999875432   2333332   56779999999


Q ss_pred             CEEEEecCCC---CEEEEecCCCCCCCceeccccCCeEEEEeCCCC
Q 010390          333 SHILSGSSDG---NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE  375 (512)
Q Consensus       333 ~~l~~g~~dg---~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~  375 (512)
                      ++|++++.++   .|++||+....  ...+..|.+.|.+++|+|..
T Consensus       366 ~~l~~~s~~~~~~~l~~~d~~g~~--~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          366 TMVIYSSSQGMGSVLNLVSTDGRF--KARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             SEEEEEEEETTEEEEEEEETTSCC--EEECCCSSSEEEEEEECCCC
T ss_pred             CEEEEEEcCCCccEEEEEECCCCc--EEEeeCCCCCCcCCcccccc
Confidence            9999888776   79999987543  35778899999999999965

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=8.1e-27  Score=208.48  Aligned_cols=200  Identities=11%  Similarity=0.024  Sum_probs=138.0

Q ss_pred             CcceEEEEEecCC----CcEEEEeeC--------------------CCcEEEEECCCCCCccccccccccccceeccccC
Q 010390           52 PPLAVSFCKTSKN----SHIFAVSDE--------------------DGYVSLFDSRRKLPSFACHRENAEKARISDWVAH  107 (512)
Q Consensus        52 ~v~~v~~~~~s~~----~~~latg~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h  107 (512)
                      .|.+|+|   +||    ++++++++.                    |+.|++|++...            .+.+..+.+|
T Consensus       113 ~v~sla~---spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d------------G~~~~s~~~~  177 (356)
T 2w18_A          113 EIRALFC---SSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED------------GGGKENQFLM  177 (356)
T ss_dssp             EEEEECC---------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT------------SCEEEEEEEC
T ss_pred             ceEEEEE---CCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC------------CceeeeeccC
Confidence            3444444   888    888887663                    555666665321            2335566788


Q ss_pred             CCcEEEEEEec---CCCEEEEEeCCCcEEEEeCCCCeeeecccCcC---CCEEEEEeeCCCCCeE------------EEE
Q 010390          108 QNAIFDLCWIK---EDTNILTASGDQTIKIWDAEKKKCTGALMGHT---GSIKSLCSHPTNSDIL------------VSG  169 (512)
Q Consensus       108 ~~~V~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l------------~s~  169 (512)
                      ...++.++|++   ++.+|++|+.|++|+|||+.+++++.++.+|.   ..+.+++|+|++ .++            ++|
T Consensus       178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSG  256 (356)
T 2w18_A          178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLR  256 (356)
T ss_dssp             CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC-----------
T ss_pred             CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeecc
Confidence            88888889988   77999999999999999999999999998654   367788999987 554            678


Q ss_pred             eCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEe
Q 010390          170 SRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWD  249 (512)
Q Consensus       170 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd  249 (512)
                      +.|++|++||..++.......       ..               ...+|...+.+..+  ++..++ +|+.|++|+|||
T Consensus       257 s~D~tIklWd~~tgk~l~v~~-------~~---------------~p~Gh~~~~lsg~~--sg~~lA-SgS~DgTIkIWD  311 (356)
T 2w18_A          257 SPVFQLIVINPKTTLSVGVML-------YC---------------LPPGQAGRFLEGDV--KDHCAA-AILTSGTIAIWD  311 (356)
T ss_dssp             -CCEEEEEEETTTTEEEEEEE-------EC---------------CCTTCCCCEEEEEE--ETTEEE-EEETTSCEEEEE
T ss_pred             CCCcEEEEEECCCCEEEEEEE-------ee---------------ccCCCcceeEcccc--CCCEEE-EEcCCCcEEEEE
Confidence            899999999998764321100       00               00123333333333  355555 577899999999


Q ss_pred             ccCccceecccCCCccccccccccccCee-EEEeCCCCCEEEEEecCCeEEEEEc
Q 010390          250 TRNLKAQITQAWPHAESSSAKETRLHGIS-SLSQDSNGVFLTASCMDHRIYLYNV  303 (512)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~  303 (512)
                      +.+++...+           +.+|...+. +++|+|||++|++|+.|++|++||+
T Consensus       312 l~tGk~l~t-----------L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          312 LLLGQCTAL-----------LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTTCSEEEE-----------ECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCcEEEE-----------ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999987763           455655554 6899999999999999999999995

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=7.5e-26  Score=234.27  Aligned_cols=303  Identities=10%  Similarity=0.060  Sum_probs=206.2

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeC-CC-----cEEEEECCCCCCccccccccccccceeccccCC---------------
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDE-DG-----YVSLFDSRRKLPSFACHRENAEKARISDWVAHQ---------------  108 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~---------------  108 (512)
                      ...+.+++|   ||||++||+++. ||     .|++||+.++....           +.....+.               
T Consensus        36 ~~~~~~~~~---SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  101 (741)
T 2ecf_A           36 GPTLMKPKV---APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL-----------LVDSKVVLPGTETLSDEEKARRE  101 (741)
T ss_dssp             CCCCEEEEE---CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE-----------EECGGGTC---------------
T ss_pred             CCCCCCceE---ecCCCEEEEEeccCCCCcccEEEEEECCCCceeE-----------ccchhhcccccccccchhhhhhh
Confidence            455778888   999999999988 88     89999998764311           11111111               


Q ss_pred             -------CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          109 -------NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       109 -------~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                             ..|.+++|+|||++|++++. +.|++||+.++.  ....+..|...+.+++|+|++ +.|+.++ ++.|++||
T Consensus       102 ~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d  178 (741)
T 2ecf_A          102 RQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVID  178 (741)
T ss_dssp             -----CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEE
T ss_pred             hhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEe
Confidence                   34789999999999999886 899999998883  455677788899999999998 7888877 46999999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC----------------
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS----------------  243 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg----------------  243 (512)
                      +.+++...........    ..       ..............+.++.|+|||+.|+++...++                
T Consensus       179 ~~~g~~~~~~~~~~~~----~~-------~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~  247 (741)
T 2ecf_A          179 LASGRQMQLTADGSTT----IG-------NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTD  247 (741)
T ss_dssp             TTTTEEEECCCCCCSS----EE-------ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEE
T ss_pred             cCCCCEEEeccCCccc----ee-------ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCccc
Confidence            9865432111000000    00       00000000001123578999999999998664321                


Q ss_pred             ----------------eEEEEeccC-ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec-----CCeEEEE
Q 010390          244 ----------------IVKFWDTRN-LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM-----DHRIYLY  301 (512)
Q Consensus       244 ----------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~  301 (512)
                                      .|.+||+.+ ++......         ...+...+..++| |||++|++++.     +..|++|
T Consensus       248 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~  317 (741)
T 2ecf_A          248 VIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDL---------GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEV  317 (741)
T ss_dssp             EEEEECCBTTSCCCEEEEEEECSSTTCCCEEECC---------CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEE
T ss_pred             ceEeecCCCCCCCCeeEEEEEECCCCCceEEecC---------CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEE
Confidence                            788889887 65432210         1135567899999 99999997764     5689999


Q ss_pred             EcccCCCCceEeeeeceece---eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEE-EeCCCCCC
Q 010390          302 NVLQLDKGPIQHFSGCRIES---FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAV-NWCPNEAG  377 (512)
Q Consensus       302 d~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v-~~~~~~~~  377 (512)
                      |+.+....  ..+..+. ..   .+..++|+|||+++++++.||.++||.++.... ...+..|...|..+ .|+|++ +
T Consensus       318 d~~~g~~~--~~~~~~~-~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg-~  392 (741)
T 2ecf_A          318 TLASNQQR--VLAHETS-PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKA-G  392 (741)
T ss_dssp             ETTTCCEE--EEEEEEC-SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTT-T
T ss_pred             ECCCCceE--EEEEcCC-CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCC-C
Confidence            98764322  2222221 11   223579999999999999999888887763322 45677788888887 599999 5


Q ss_pred             eE-EEEeCCC--cEEEEeCCC
Q 010390          378 KI-VTSSDDY--TVRLWSLEN  395 (512)
Q Consensus       378 ~l-~s~~~dg--~i~vwd~~~  395 (512)
                      .| ++++.|+  .++||++..
T Consensus       393 ~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          393 LAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             EEEEEECSSCTTCBEEEEEET
T ss_pred             EEEEEEeCCCCceEEEEEEEc
Confidence            55 5566665  899999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=1.9e-24  Score=201.13  Aligned_cols=284  Identities=7%  Similarity=0.044  Sum_probs=195.6

Q ss_pred             cCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-CCcEEEEeCCC
Q 010390           62 SKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-DQTIKIWDAEK  139 (512)
Q Consensus        62 s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~i~iwd~~~  139 (512)
                      .++++ .++++..++.|.+||..+++.             ...+..+...+ .++|+|++++|++++. ++.|.+||+.+
T Consensus         6 ~~~~~~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~   71 (331)
T 3u4y_A            6 QTTSNFGIVVEQHLRRISFFSTDTLEI-------------LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL   71 (331)
T ss_dssp             -CCCCEEEEEEGGGTEEEEEETTTCCE-------------EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS
T ss_pred             cCCCCEEEEEecCCCeEEEEeCcccce-------------eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence            55554 577788899999999987643             33344455666 9999999997776665 89999999999


Q ss_pred             Cee-eecccCcCCCEEEEEeeCCCCCeEEEEeCCC---cEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390          140 KKC-TGALMGHTGSIKSLCSHPTNSDILVSGSRDG---SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR  215 (512)
Q Consensus       140 ~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (512)
                      ++. ...+..+..+..+++|+|++ ++++++..++   .|.+||+.+++....                           
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~---------------------------  123 (331)
T 3u4y_A           72 EPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFIST---------------------------  123 (331)
T ss_dssp             SSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEE---------------------------
T ss_pred             CceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEE---------------------------
Confidence            987 77777666666669999998 7777555553   899999986543211                           


Q ss_pred             cccccccEEEEEEeecCCEEEEEeecCCe-EEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-
Q 010390          216 RKAASMSITSVLYLKDEVSIATASAVNSI-VKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-  293 (512)
Q Consensus       216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  293 (512)
                       ........+++|+|+++.+++++..++. |.+|++.......... .      ........+..++|+|+|+++++++ 
T Consensus       124 -~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~------~~~~~~~~~~~~~~spdg~~l~v~~~  195 (331)
T 3u4y_A          124 -IPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q------EFISGGTRPFNITFTPDGNFAFVANL  195 (331)
T ss_dssp             -EECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E------EEECSSSSEEEEEECTTSSEEEEEET
T ss_pred             -EECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C------ccccCCCCccceEECCCCCEEEEEeC
Confidence             1123356899999999988887766688 9999988643322110 0      1112234578999999999766555 


Q ss_pred             cCCeEEEEEcccCCC-CceEeeeeceeceeEEEEEECCCCCEEEEec-CCCCEEEEecCCCCCCC-ceecc-------cc
Q 010390          294 MDHRIYLYNVLQLDK-GPIQHFSGCRIESFYVKSEICPNASHILSGS-SDGNAYVWQVNKPQADP-IKLKS-------HD  363 (512)
Q Consensus       294 ~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~-~~~~~-------h~  363 (512)
                      .++.|.+||+.+... ..+..+..   ...+..++|+|+|++|+++. .++.|.+||+.+++... ..+..       ..
T Consensus       196 ~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
T 3u4y_A          196 IGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL  272 (331)
T ss_dssp             TTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred             CCCeEEEEECCCCcccceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc
Confidence            689999999876443 11333332   23455689999999776554 57789999998765410 11111       11


Q ss_pred             CCeEEEEeCCCCCCeE-EEEeCCCcEEEEeCCCCccc
Q 010390          364 GEVTAVNWCPNEAGKI-VTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~  399 (512)
                      .....++|+|++ ++| +++..++.|.+||+......
T Consensus       273 ~~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~  308 (331)
T 3u4y_A          273 FGANQMALNKTE-TKLFISANISRELKVFTISGKVVG  308 (331)
T ss_dssp             TTCCCEEECTTS-SEEEEEETTTTEEEEEETTSCEEE
T ss_pred             ccccceEECCCC-CEEEEecCCCCcEEEEEecCCccc
Confidence            223568999999 555 55566789999999876543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=1.3e-24  Score=203.19  Aligned_cols=287  Identities=7%  Similarity=0.065  Sum_probs=189.7

Q ss_pred             cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC-CcEEEEeCC--CCe-
Q 010390           66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD-QTIKIWDAE--KKK-  141 (512)
Q Consensus        66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-g~i~iwd~~--~~~-  141 (512)
                      .++++++.|+.|++||++....          ...+. ...|...+.+++|+|++++|++++.+ +.|.+|++.  +++ 
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~   74 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGA----------LTLTQ-VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL   74 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSC----------EEEEE-EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEEEeCCCCCeEEEEEECCCCc----------EEEee-eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce
Confidence            3455557899999999863211          01122 23467789999999999999988886 999999987  554 


Q ss_pred             -eeecccCcCCCEEEEEeeCCCCCeEEEE-eCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc
Q 010390          142 -CTGALMGHTGSIKSLCSHPTNSDILVSG-SRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA  219 (512)
Q Consensus       142 -~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (512)
                       .+..+..+. .+..++|+|++ .+|+++ ..++.|.+||+..+...                        ... .....
T Consensus        75 ~~~~~~~~~~-~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~------------------------~~~-~~~~~  127 (343)
T 1ri6_A           75 TFAAESALPG-SLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPV------------------------GVV-DVVEG  127 (343)
T ss_dssp             EEEEEEECSS-CCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEE------------------------EEE-EEECC
T ss_pred             eeccccccCC-CCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCccc------------------------ccc-ccccC
Confidence             334454443 78899999998 655554 45889999998521100                        000 11112


Q ss_pred             cccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCe
Q 010390          220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHR  297 (512)
Q Consensus       220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~  297 (512)
                      ...+.+++|+|+++.+++++..++.|.+||+.+ ++...... ..     ........+..++|+|+++++++++ .++.
T Consensus       128 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~  201 (343)
T 1ri6_A          128 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP-AE-----VTTVEGAGPRHMVFHPNEQYAYCVNELNSS  201 (343)
T ss_dssp             CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-EE-----EECSTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc-cc-----cccCCCCCcceEEECCCCCEEEEEeCCCCE
Confidence            335888999999999988775789999999987 43321100 00     0111224578899999999776655 7899


Q ss_pred             EEEEEcccCCCCc--eEeeeec----eeceeEEEEEECCCCCEEE-EecCCCCEEEEecCC--CCC-CCceeccccCCeE
Q 010390          298 IYLYNVLQLDKGP--IQHFSGC----RIESFYVKSEICPNASHIL-SGSSDGNAYVWQVNK--PQA-DPIKLKSHDGEVT  367 (512)
Q Consensus       298 i~i~d~~~~~~~~--~~~~~~~----~~~~~~~~~~~s~~~~~l~-~g~~dg~i~iw~~~~--~~~-~~~~~~~h~~~v~  367 (512)
                      |.+||+.......  .......    .....+..++|+|++++|+ ++..++.|.+|++..  +.. ....+..+. .+.
T Consensus       202 i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~  280 (343)
T 1ri6_A          202 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPR  280 (343)
T ss_dssp             EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCC
T ss_pred             EEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccc
Confidence            9999985422221  2222211    1123455799999998886 555789999999983  221 122233333 388


Q ss_pred             EEEeCCCCCCeEEEEe-CCCcEEEEeC--CCCcc
Q 010390          368 AVNWCPNEAGKIVTSS-DDYTVRLWSL--ENSRC  398 (512)
Q Consensus       368 ~v~~~~~~~~~l~s~~-~dg~i~vwd~--~~~~~  398 (512)
                      +++|+|++ .+|++++ .|+.|.+|++  .+++.
T Consensus       281 ~~~~s~dg-~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          281 GFNVDHSG-KYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             CEEECTTS-SEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             eEEECCCC-CEEEEecCCCCeEEEEEEcCCCcee
Confidence            99999999 6676666 6899999955  45543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=2.5e-24  Score=196.64  Aligned_cols=260  Identities=10%  Similarity=0.058  Sum_probs=188.2

Q ss_pred             EeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC-CeeeecccC
Q 010390           70 VSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK-KKCTGALMG  148 (512)
Q Consensus        70 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~  148 (512)
                      .++.|+.|++||+.++.              ...+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......
T Consensus        17 ~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~   81 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRK--------------MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG   81 (297)
T ss_dssp             -CCCCEEEEEEETTTTE--------------EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT
T ss_pred             CCCcceeEEEEeCCCCc--------------eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc
Confidence            35678999999997653              334556889999999999999999886 78999999999 877766665


Q ss_pred             c-CCCEEEEEeeCCCCCeEEEEe--CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          149 H-TGSIKSLCSHPTNSDILVSGS--RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       149 h-~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      + ...+.+++|+|++ .+|++++  .++...+|.+.......                          ..+ .....+..
T Consensus        82 ~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~--------------------------~~~-~~~~~~~~  133 (297)
T 2ojh_A           82 FATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTP--------------------------RLM-TKNLPSYW  133 (297)
T ss_dssp             TCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCCC--------------------------EEC-CSSSSEEE
T ss_pred             cccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCce--------------------------EEe-ecCCCccc
Confidence            5 3678999999998 7888888  34556666553221110                          011 11224888


Q ss_pred             EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcc
Q 010390          226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVL  304 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~  304 (512)
                      ++|+|+++.+++++..++.+.+|+++.......          ....+...+.++.|+|++++|+.++ .++.+++|++.
T Consensus       134 ~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          134 HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET----------RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             EEECTTSSEEEEEEEETTEEEEEEEETTTCCEE----------ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eEECCCCCEEEEEECCCCceEEEEEECCCCcce----------EcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence            999999999987777899999998653222111          2344556789999999999888766 58999999985


Q ss_pred             cCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-----------CCEEEEecCCCCCC-CceeccccCCeEEEEeC
Q 010390          305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-----------GNAYVWQVNKPQAD-PIKLKSHDGEVTAVNWC  372 (512)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----------g~i~iw~~~~~~~~-~~~~~~h~~~v~~v~~~  372 (512)
                      .. ......+..+.  ..+..++|+|++++|++++.+           +.|++||+.+++.. +..+.+|...+.+++|+
T Consensus       204 ~~-~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s  280 (297)
T 2ojh_A          204 VD-GSSVERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWS  280 (297)
T ss_dssp             TT-SSCEEECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBC
T ss_pred             CC-CCCcEEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceEC
Confidence            32 22334443332  456779999999999888765           56999999876542 22344788899999999


Q ss_pred             CCCCCeEEEEeCCC
Q 010390          373 PNEAGKIVTSSDDY  386 (512)
Q Consensus       373 ~~~~~~l~s~~~dg  386 (512)
                      |++ .+|++++.|.
T Consensus       281 pdg-~~l~~~~~~~  293 (297)
T 2ojh_A          281 PDG-DEFAYVRYFP  293 (297)
T ss_dssp             TTS-SEEEEEEECC
T ss_pred             CCC-CEEEEEEecc
Confidence            999 7777776543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=2.6e-24  Score=230.13  Aligned_cols=314  Identities=8%  Similarity=0.022  Sum_probs=218.3

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCC------CcEEEEECCCCCCccccccccccccceeccccCCCcE------
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDED------GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAI------  111 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V------  111 (512)
                      ..+.+|.+.+.+++|   ||||++||+++.+      ..|++||+.++.              ...+..|...+      
T Consensus        46 ~~lt~~~~~v~~~~~---SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--------------~~~lt~~~~~~~~~~~~  108 (1045)
T 1k32_A           46 RKIVSNLGVINNARF---FPDGRKIAIRVMRGSSLNTADLYFYNGENGE--------------IKRITYFSGKSTGRRMF  108 (1045)
T ss_dssp             EEEECSSSEEEEEEE---CTTSSEEEEEEEESTTCCEEEEEEEETTTTE--------------EEECCCCCEEEETTEEC
T ss_pred             EEeeeCCCcccCeEE---CCCCCEEEEEEeeccCCCCCeEEEEECCCCC--------------eEEcccCCCcccccccc
Confidence            345678888888888   9999999988543      479999987652              45677888888      


Q ss_pred             -EEEEEecCCCEEEEEeCC------CcEEEEeCCCCeeee----------------------------------------
Q 010390          112 -FDLCWIKEDTNILTASGD------QTIKIWDAEKKKCTG----------------------------------------  144 (512)
Q Consensus       112 -~~l~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~----------------------------------------  144 (512)
                       ..++|+|||+.+++++.+      ..|.+|++.+++...                                        
T Consensus       109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw  188 (1045)
T 1k32_A          109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW  188 (1045)
T ss_dssp             SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred             cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence             999999999977777654      357888876654321                                        


Q ss_pred             ---------cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC-CCCCccccceeeecccccccccc-------
Q 010390          145 ---------ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS-SPKSNCAESFVFSSAVVKGAHLL-------  207 (512)
Q Consensus       145 ---------~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------  207 (512)
                               .+.+|...+.++.|+++  .++++++.|+.+.+|.+.... ...............+.+.+...       
T Consensus       189 ~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~  266 (1045)
T 1k32_A          189 IEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGS  266 (1045)
T ss_dssp             EEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTE
T ss_pred             EECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCE
Confidence                     12346667788888875  577788888999999865321 11111110000011111111100       


Q ss_pred             -----cccccceecc-----------cccccEEEEEEe-ecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390          208 -----SQSKRVSRRK-----------AASMSITSVLYL-KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       208 -----~~~~~~~~~~-----------~~~~~v~~~~~~-~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                           ........+.           .+...+.+++|+ |+++.+++++  ++.|.+|+...+....            .
T Consensus       267 i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~------------~  332 (1045)
T 1k32_A          267 IYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLK------------V  332 (1045)
T ss_dssp             EEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEE------------C
T ss_pred             EEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEE------------c
Confidence                 0001111111           134468999999 9999998865  8899999998765432            2


Q ss_pred             ccccc-CeeEEEeCCCCCEEEEEecCCeEE-EEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          271 ETRLH-GISSLSQDSNGVFLTASCMDHRIY-LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       271 ~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                      ..+.. .+..++|+ +|+.|+.++.++.+. +||+....   ...+..+  ...+..++|+|+|++|++++.++.|++||
T Consensus       333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~---~~~l~~~--~~~~~~~~~SpDG~~la~~~~~~~v~~~d  406 (1045)
T 1k32_A          333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK---AEKFEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTVD  406 (1045)
T ss_dssp             SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC---EEECCCC--CCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC---ceEecCC--ccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence            23334 68899999 999999988888888 88975432   2233322  24567899999999999999999999999


Q ss_pred             cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC----------CcEEEEeCCCCcc
Q 010390          349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD----------YTVRLWSLENSRC  398 (512)
Q Consensus       349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d----------g~i~vwd~~~~~~  398 (512)
                      +.+++. .....+|.+.+.+++|+||+ ++|++++.+          +.|++||+.+++.
T Consensus       407 ~~tg~~-~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~  464 (1045)
T 1k32_A          407 LETGKP-TVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  464 (1045)
T ss_dssp             TTTCCE-EEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             CCCCce-EEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence            988765 34555888999999999999 788877764          4999999998873

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=3.1e-24  Score=221.54  Aligned_cols=309  Identities=9%  Similarity=0.001  Sum_probs=196.0

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC---cEEEEEEecCCCEEEEEe
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN---AIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~  127 (512)
                      ..+.+++|   +|||+++++ +.||.|++||+.+++.             ...+..|..   .|.+++|||||++|++++
T Consensus        17 ~~~~~~~~---spdg~~~~~-~~dg~i~~~d~~~g~~-------------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~   79 (723)
T 1xfd_A           17 IHDPEAKW---ISDTEFIYR-EQKGTVRLWNVETNTS-------------TVLIEGKKIESLRAIRYEISPDREYALFSY   79 (723)
T ss_dssp             CCCCCCCB---SSSSCBCCC-CSSSCEEEBCGGGCCC-------------EEEECTTTTTTTTCSEEEECTTSSEEEEEE
T ss_pred             ccccccEE---cCCCcEEEE-eCCCCEEEEECCCCcE-------------EEEeccccccccccceEEECCCCCEEEEEe
Confidence            34677778   999998776 6899999999987743             333444544   499999999999999987


Q ss_pred             CC---------CcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          128 GD---------QTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       128 ~d---------g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      .+         +.|.+||+.+++.  +.....|...+..++|+|++ +.|+.++. +.|++||+.+++..........  
T Consensus        80 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~--  155 (723)
T 1xfd_A           80 NVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE--  155 (723)
T ss_dssp             SCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBT--
T ss_pred             cCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCC--
Confidence            74         7788999998875  22233455568899999998 78888776 7999999987654321100000  


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC---------------------------------C
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN---------------------------------S  243 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d---------------------------------g  243 (512)
                        .....+..    ..+ ........+.++.|+|||+.|+++...+                                 .
T Consensus       156 --~~~~~g~~----~~v-~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  228 (723)
T 1xfd_A          156 --GVIYNGLS----DWL-YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI  228 (723)
T ss_dssp             --TTEEEEEC----CHH-HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred             --CceECccc----cee-EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence              00000000    000 0000012347899999999999876432                                 1


Q ss_pred             eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec----CCeEEEEEcccCCCCceEeeeecee
Q 010390          244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM----DHRIYLYNVLQLDKGPIQHFSGCRI  319 (512)
Q Consensus       244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~  319 (512)
                      .|++||+.+++.......+.     ....+...+..++|+|||++|++...    +..|++||+.+...  ...+.... 
T Consensus       229 ~l~~~d~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~-  300 (723)
T 1xfd_A          229 SLHVIGLNGPTHDLEMMPPD-----DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC--TKKHEDES-  300 (723)
T ss_dssp             EEEEEESSSSCCCEECCCCC-----CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE--EEEEEEEC-
T ss_pred             EEEEEECCCCceeEEeeCCc-----cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc--eEEEEecc-
Confidence            78899988776432221110     12223566899999999998877653    35799999876432  22221111 


Q ss_pred             ceeE----EEEEECCCCCEEEE--ecCCC------CEEEEe-cCCCCC-CCceeccccCCeEE-EEeCCCCCCeEEEEeC
Q 010390          320 ESFY----VKSEICPNASHILS--GSSDG------NAYVWQ-VNKPQA-DPIKLKSHDGEVTA-VNWCPNEAGKIVTSSD  384 (512)
Q Consensus       320 ~~~~----~~~~~s~~~~~l~~--g~~dg------~i~iw~-~~~~~~-~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~  384 (512)
                      ...+    ..++|+|||+.|+.  +..++      .|++|| ...+.. ....+..+...+.. ++|+|++ +.|+..+.
T Consensus       301 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~  379 (723)
T 1xfd_A          301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG-NKIYFLST  379 (723)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT-TEEEEEES
T ss_pred             CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC-CEEEEEEc
Confidence            1111    25799999997765  44566      466777 333330 02334333444554 6999999 67765554


Q ss_pred             -C--CcEEEEeCCCC
Q 010390          385 -D--YTVRLWSLENS  396 (512)
Q Consensus       385 -d--g~i~vwd~~~~  396 (512)
                       +  +.+++|++...
T Consensus       380 ~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          380 EDLPRRRQLYSANTV  394 (723)
T ss_dssp             SSCTTCCEEEEECSS
T ss_pred             CCCCcceEEEEEeCC
Confidence             4  88999998753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=5.2e-23  Score=212.99  Aligned_cols=285  Identities=9%  Similarity=0.056  Sum_probs=202.1

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI  132 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i  132 (512)
                      +.+++|   ||||++|++++. +.|++||+.++..           .....+..|...+..++|+|||++|++++ ++.|
T Consensus       111 v~~~~~---SpDg~~l~~~~~-~~i~~~d~~~~~~-----------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i  174 (741)
T 2ecf_A          111 IVDYQW---SPDAQRLLFPLG-GELYLYDLKQEGK-----------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNL  174 (741)
T ss_dssp             SCCCEE---CTTSSEEEEEET-TEEEEEESSSCST-----------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEE
T ss_pred             cceeEE---CCCCCEEEEEeC-CcEEEEECCCCCc-----------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcE
Confidence            677777   999999999986 8999999987610           01445667888999999999999999887 4689


Q ss_pred             EEEeCCCCeeeecccCcCCC----------------EEEEEeeCCCCCeEEEEeCCC-----------------------
Q 010390          133 KIWDAEKKKCTGALMGHTGS----------------IKSLCSHPTNSDILVSGSRDG-----------------------  173 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~h~~~----------------v~~l~~~~~~~~~l~s~~~dg-----------------------  173 (512)
                      ++||+.+++.......+...                +.+++|+|++ +.|++++.|+                       
T Consensus       175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence            99999998876655544432                4779999998 7777776655                       


Q ss_pred             ----------cEEEEeCCC-CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee--
Q 010390          174 ----------SFAIWDLRC-KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA--  240 (512)
Q Consensus       174 ----------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~--  240 (512)
                                .|.+||+.+ ++.....                         ....+...+..++| |+++.+++++.  
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~-pDg~~l~~~~~~~  307 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQTQWID-------------------------LGKEQDIYLARVNW-RDPQHLSFQRQSR  307 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCCCEEEC-------------------------CCSCSSEEEEEEEE-EETTEEEEEEEET
T ss_pred             CCCCCCCCeeEEEEEECCCCCceEEec-------------------------CCCCcceEEEEEEe-CCCCEEEEEEecc
Confidence                      677788765 4321100                         00135668999999 99999987654  


Q ss_pred             --cCCeEEEEeccCccceecccCCCcccccccccccc----CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee
Q 010390          241 --VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH----GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF  314 (512)
Q Consensus       241 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  314 (512)
                        .+..|.+||+.+++.....           ..+..    .+..++|+|||+++++++.+|.+++|.+... .. ...+
T Consensus       308 ~~~~~~i~~~d~~~g~~~~~~-----------~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-~~-~~~l  374 (741)
T 2ecf_A          308 DQKKLDLVEVTLASNQQRVLA-----------HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-GK-AAAL  374 (741)
T ss_dssp             TSSEEEEEEEETTTCCEEEEE-----------EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-SC-EEES
T ss_pred             cCCeEEEEEEECCCCceEEEE-----------EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-CC-eeee
Confidence              3568999999987654321           11111    3568999999999999999998888876422 22 4444


Q ss_pred             eeceeceeEEEE-EECCCCCEEE-EecCCC--CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe-CC---C
Q 010390          315 SGCRIESFYVKS-EICPNASHIL-SGSSDG--NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-DD---Y  386 (512)
Q Consensus       315 ~~~~~~~~~~~~-~~s~~~~~l~-~g~~dg--~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~d---g  386 (512)
                      ..+.  ..+..+ .|+|+++.|+ +++.++  .++||++.........+.. ...+..++|+||+ ++|+... ..   .
T Consensus       375 ~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg-~~l~~~~~~~~~p~  450 (741)
T 2ecf_A          375 THGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNA-SVYVDSWSNNSTPP  450 (741)
T ss_dssp             CCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTS-SEEEEEEEETTEEE
T ss_pred             eecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCC-CEEEEEecCCCCCC
Confidence            4332  234455 5999998775 455555  8999998753332345544 6678999999999 5655543 32   5


Q ss_pred             cEEEEeCCCCc
Q 010390          387 TVRLWSLENSR  397 (512)
Q Consensus       387 ~i~vwd~~~~~  397 (512)
                      .+.+|+...+.
T Consensus       451 ~~~l~~~~~~~  461 (741)
T 2ecf_A          451 QIELFRANGEK  461 (741)
T ss_dssp             EEEEEETTSCE
T ss_pred             eEEEEEcCCCe
Confidence            78999986553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=7.6e-24  Score=217.92  Aligned_cols=308  Identities=11%  Similarity=0.062  Sum_probs=193.9

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCC--ccccccccccc---cceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLP--SFACHRENAEK---ARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~--~~~~~~~~~~~---~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      +..+.|   .  |+.+++++.+| | +||+.+++.  ...........   ..-.....+...|.+++|+|| ..++.+.
T Consensus        28 ~~~~~w---~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~   99 (706)
T 2z3z_A           28 VVGLQW---M--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT   99 (706)
T ss_dssp             CTTCEE---E--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE
T ss_pred             CCCCcC---c--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE
Confidence            567788   5  56677777787 8 999987754  11100000000   000000112257999999999 6666553


Q ss_pred             CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC-----CCCCCCccccceeeeccccc
Q 010390          128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC-----KSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~  202 (512)
                       ++.|++||+.+++.... ..+...+.+++|+|++ +.|+.+ .|+.|++||+.+     ++..........    ....
T Consensus       100 -~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~----~~~~  171 (706)
T 2z3z_A          100 -QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTE----TLVY  171 (706)
T ss_dssp             -TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBT----TEEE
T ss_pred             -CCEEEEEECCCCceEEc-cCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCC----CeEc
Confidence             59999999998876544 3466778899999998 777775 679999999987     543221110000    0000


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEee--------------------------------cCCeEEEEec
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA--------------------------------VNSIVKFWDT  250 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~--------------------------------~dg~i~iwd~  250 (512)
                      +       ..  ....+...+.++.|+||++.+++++.                                .+..|.+||+
T Consensus       172 g-------~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~  242 (706)
T 2z3z_A          172 G-------QA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL  242 (706)
T ss_dssp             S-------SC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred             c-------cc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence            0       00  01112234688999999999998652                                2467999999


Q ss_pred             cCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC-----eEEEEEcccCCCCceEeeeeceece---e
Q 010390          251 RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH-----RIYLYNVLQLDKGPIQHFSGCRIES---F  322 (512)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~---~  322 (512)
                      .+++.....         ....+...+.+++|+|||+.|++++.++     .|++||+.+..  ....+.......   .
T Consensus       243 ~~~~~~~~~---------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          243 ATGKTVYLQ---------TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVEP  311 (706)
T ss_dssp             TTTEEEECC---------CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCCC
T ss_pred             CCCceEeec---------cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeECc
Confidence            887654321         1123456689999999999999988775     89999987641  122221111111   1


Q ss_pred             EEEEEECC--CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE-EEeCCCCCCeE-EEEeCCC----cEEEEeCC
Q 010390          323 YVKSEICP--NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA-VNWCPNEAGKI-VTSSDDY----TVRLWSLE  394 (512)
Q Consensus       323 ~~~~~~s~--~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~l-~s~~~dg----~i~vwd~~  394 (512)
                      +..++|+|  +|+++++++.|+.++||.++........+..|...+.. ++|+|++ ..| ++++.++    .|..||+.
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKG-TRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTS-SEEEEEESSSCTTCBEEEEEETT
T ss_pred             cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCC-CEEEEEecCCCCceEEEEEEEcC
Confidence            24579999  99999999999999999887322223556677777877 7999999 555 4555555    67777877


Q ss_pred             CCc
Q 010390          395 NSR  397 (512)
Q Consensus       395 ~~~  397 (512)
                      +++
T Consensus       391 ~~~  393 (706)
T 2z3z_A          391 GGK  393 (706)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=9.2e-23  Score=209.88  Aligned_cols=287  Identities=13%  Similarity=0.106  Sum_probs=197.1

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      ..|.+++|   ||| +.++.+. ++.|++||+.++.              ...+..+...+.+++|+|||++|+++ .|+
T Consensus        82 ~~v~~~~~---spd-~~~~~~~-~~~i~~~d~~~~~--------------~~~l~~~~~~~~~~~~SpdG~~la~~-~~~  141 (706)
T 2z3z_A           82 FPSFRTLD---AGR-GLVVLFT-QGGLVGFDMLARK--------------VTYLFDTNEETASLDFSPVGDRVAYV-RNH  141 (706)
T ss_dssp             CCCEEEEE---TTT-TEEEEEE-TTEEEEEETTTTE--------------EEEEECCTTCCTTCEECTTSSEEEEE-ETT
T ss_pred             cCceeEEE---CCC-CeEEEEE-CCEEEEEECCCCc--------------eEEccCCcccccCCcCCCCCCEEEEE-ECC
Confidence            45777777   999 6565554 5999999997653              23344566778899999999999985 689


Q ss_pred             cEEEEeCCC-----CeeeecccCcCCC--------------EEEEEeeCCCCCeEEEEe---------------------
Q 010390          131 TIKIWDAEK-----KKCTGALMGHTGS--------------IKSLCSHPTNSDILVSGS---------------------  170 (512)
Q Consensus       131 ~i~iwd~~~-----~~~~~~~~~h~~~--------------v~~l~~~~~~~~~l~s~~---------------------  170 (512)
                      .|++||+.+     ++.......+...              +.++.|+|++ +.|++++                     
T Consensus       142 ~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~  220 (706)
T 2z3z_A          142 NLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAES  220 (706)
T ss_dssp             EEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred             eEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCce
Confidence            999999998     7766555444443              4789999998 7888876                     


Q ss_pred             ------------CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE
Q 010390          171 ------------RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA  238 (512)
Q Consensus       171 ------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  238 (512)
                                  .+..|.+||+.+++....                         .....+...+.+++|+|+++.++++
T Consensus       221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~-------------------------~~~~~~~~~~~~~~~spdg~~l~~~  275 (706)
T 2z3z_A          221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYL-------------------------QTGEPKEKFLTNLSWSPDENILYVA  275 (706)
T ss_dssp             EEECCCBTTSCCCEEEEEEEETTTTEEEEC-------------------------CCCSCTTCEEEEEEECTTSSEEEEE
T ss_pred             EEeeCCCCCCCCCeeEEEEEECCCCceEee-------------------------ccCCCCceeEeeEEEECCCCEEEEE
Confidence                        346788888875532110                         0111345679999999999998886


Q ss_pred             eecCC-----eEEEEeccCccceecccCCCccccccccccccCeeEEEeCC--CCCEEEEEecCCeEEEEEcccCCCCce
Q 010390          239 SAVNS-----IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS--NGVFLTASCMDHRIYLYNVLQLDKGPI  311 (512)
Q Consensus       239 g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~  311 (512)
                      + .++     .|.+||+.+++........      ........+..+.|+|  +|++++++..++.+++|++.. .....
T Consensus       276 ~-~~~~~~~~~v~~~d~~~g~~~~~~~~~------~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~-~~~~~  347 (706)
T 2z3z_A          276 E-VNRAQNECKVNAYDAETGRFVRTLFVE------TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT-TGRLI  347 (706)
T ss_dssp             E-ECTTSCEEEEEEEETTTCCEEEEEEEE------ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET-TSCEE
T ss_pred             E-eCCCCCeeEEEEEECCCCceeeEEEEc------cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC-CCCEE
Confidence            5 354     8999999987322211000      0000111246789999  999999999999999998752 22333


Q ss_pred             EeeeeceeceeEEE-EEECCCCCEEEEec-CCC----CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe-C
Q 010390          312 QHFSGCRIESFYVK-SEICPNASHILSGS-SDG----NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-D  384 (512)
Q Consensus       312 ~~~~~~~~~~~~~~-~~~s~~~~~l~~g~-~dg----~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~  384 (512)
                      ..+..+.  ..+.. ++|+|+++.|+.++ .++    .|+.||+.++..  ..+ .|...+.+++|+|++ ++|+..+ .
T Consensus       348 ~~l~~~~--~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~l-~~~~~~~~~~~spdg-~~l~~~~~~  421 (706)
T 2z3z_A          348 RQVTKGE--WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT--KDL-TPESGMHRTQLSPDG-SAIIDIFQS  421 (706)
T ss_dssp             EECCCSS--SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC--EES-CCSSSEEEEEECTTS-SEEEEEEEC
T ss_pred             EecCCCC--eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc--eec-cCCCceEEEEECCCC-CEEEEEecC
Confidence            4443332  22444 79999998876544 444    566666665442  233 367789999999999 6666553 3


Q ss_pred             C---CcEEEEeCCCCc
Q 010390          385 D---YTVRLWSLENSR  397 (512)
Q Consensus       385 d---g~i~vwd~~~~~  397 (512)
                      +   +.|++||+.+++
T Consensus       422 ~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          422 PTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SSCSCEEEEEESSSCE
T ss_pred             CCCCcEEEEEECCCCe
Confidence            3   569999999886

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=3.9e-23  Score=192.61  Aligned_cols=272  Identities=9%  Similarity=0.017  Sum_probs=191.7

Q ss_pred             cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc-cCCC-cEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCee
Q 010390           66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQN-AIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKC  142 (512)
Q Consensus        66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~-~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~  142 (512)
                      ++|++++.++.|.+||..+++.             +..+. ++.. .+..++|+|++++++ ++..++.|.+||+.+++.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~   68 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAV-------------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET   68 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-------------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE
T ss_pred             cEEEEcCCCCeEEEEECCCCcE-------------EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe
Confidence            5789999999999999976532             33333 2222 478899999998765 555678999999999988


Q ss_pred             eecccC-c----CCCEEEEEeeCCCCCeEEEEe------------CCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          143 TGALMG-H----TGSIKSLCSHPTNSDILVSGS------------RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       143 ~~~~~~-h----~~~v~~l~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      +..+.. +    ...+.+++|+|++ ..++++.            .++.|.+||+.+++...                  
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------------------  129 (337)
T 1pby_B           69 LGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK------------------  129 (337)
T ss_dssp             EEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE------------------
T ss_pred             EeeEEcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEE------------------
Confidence            766652 1    2256789999988 6777775            57999999997543211                  


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                               .. .....+.+++|+|+++.++++   ++.|.+||+.+++.........         .   ...+.|+|+
T Consensus       130 ---------~~-~~~~~~~~~~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~---------~---~~~~~~s~d  184 (337)
T 1pby_B          130 ---------AF-EAPRQITMLAWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQS---------W---EAETYAQPD  184 (337)
T ss_dssp             ---------EE-ECCSSCCCEEECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTT---------T---TTTTBCCCB
T ss_pred             ---------EE-eCCCCcceeEECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccc---------c---CCCceeCCC
Confidence                     11 112356788999999988875   6889999999877654321110         0   112367888


Q ss_pred             CCEEEEEecCC------------------------eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390          286 GVFLTASCMDH------------------------RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD  341 (512)
Q Consensus       286 ~~~l~~~~~dg------------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  341 (512)
                      +..++..+..+                        .|.+||+.+.+..   ..........+..++|+|++++++++  +
T Consensus       185 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~  259 (337)
T 1pby_B          185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTRAFGA--Y  259 (337)
T ss_dssp             CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred             ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCEEEEe--C
Confidence            87665544322                        4689998764332   22222223346679999999999888  7


Q ss_pred             CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       342 g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      +.|++||+.+++.. ..+. ....+.+++|+|++ ++|++++.|+.|++||+.+++.+..+
T Consensus       260 ~~v~~~d~~~~~~~-~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          260 NVLESFDLEKNASI-KRVP-LPHSYYSVNVSTDG-STVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             SEEEEEETTTTEEE-EEEE-CSSCCCEEEECTTS-CEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEECCCCcCc-ceec-CCCceeeEEECCCC-CEEEEEcCCCcEEEEECcCCcEEEEE
Confidence            89999999876542 3333 23568899999999 78888889999999999998876543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=1.5e-22  Score=189.60  Aligned_cols=291  Identities=9%  Similarity=0.058  Sum_probs=184.8

Q ss_pred             CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCe--eeecccC
Q 010390           74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---DQTIKIWDAEKKK--CTGALMG  148 (512)
Q Consensus        74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~  148 (512)
                      ++.|.+|+++.....         .. ......+...+..++|+|+|+ |++++.   ++.|.+|++.+++  .+..+..
T Consensus        15 ~~~i~v~~~d~~tg~---------~~-~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~   83 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKT---------LT-NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA   83 (347)
T ss_dssp             CCEEEEEEEETTTTE---------EE-EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCEEEEEEcCCCCe---------EE-EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec
Confidence            456888877542110         01 112234556778899999999 655544   6899999997765  3444455


Q ss_pred             cCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEE
Q 010390          149 HTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVL  227 (512)
Q Consensus       149 h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  227 (512)
                      +...+..++|+|++ ++|++++ .++.|.+|++.........      ....  ...      ... ........+.+++
T Consensus        84 ~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~------~~~~--~~~------~~p-~~~~~~~~~~~~~  147 (347)
T 3hfq_A           84 PGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLT------DTVQ--HSG------HGP-RPEQDGSHIHYTD  147 (347)
T ss_dssp             ESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEE------EEEE--CCC------CCS-STTCSSCCEEEEE
T ss_pred             CCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeec------ceee--cCC------CCC-CccccCCCceEEE
Confidence            67788999999998 6666666 7899999999642211100      0000  000      000 0011234688999


Q ss_pred             EeecCCEEEEEeecCCeEEEEecc-CccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEccc
Q 010390          228 YLKDEVSIATASAVNSIVKFWDTR-NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQ  305 (512)
Q Consensus       228 ~~~~~~~l~~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  305 (512)
                      |+|+++ +++++..++.|.+||+. +++......        ........+..++|+|+|++|+++ ..++.|.+|++..
T Consensus       148 ~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~--------~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          148 LTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSV--------LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             ECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEE--------EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeee--------EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            999999 77667678899999998 333221100        011112356789999999976664 5678999999864


Q ss_pred             CCCC--ceEeeeecee----ceeEEEEEECCCCCEE-EEecCCCCEEEEecCCCC--CCCceeccccCCeEEEEeCCCCC
Q 010390          306 LDKG--PIQHFSGCRI----ESFYVKSEICPNASHI-LSGSSDGNAYVWQVNKPQ--ADPIKLKSHDGEVTAVNWCPNEA  376 (512)
Q Consensus       306 ~~~~--~~~~~~~~~~----~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~  376 (512)
                      ....  ....+.....    ...+..++|+|+|++| ++...++.|.+|++....  .....+..+...+.+++|+|++ 
T Consensus       219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg-  297 (347)
T 3hfq_A          219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE-  297 (347)
T ss_dssp             TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS-
T ss_pred             CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC-
Confidence            2221  1222222111    1346779999999987 555668999999997322  1123344556678999999999 


Q ss_pred             CeEEEEeC-CCcEEEE--eCCCCccccc
Q 010390          377 GKIVTSSD-DYTVRLW--SLENSRCSSM  401 (512)
Q Consensus       377 ~~l~s~~~-dg~i~vw--d~~~~~~~~~  401 (512)
                      ++|++++. ++.|.+|  |..+++....
T Consensus       298 ~~l~v~~~~~~~v~v~~~d~~tg~l~~~  325 (347)
T 3hfq_A          298 AFVVVVNQNTDNATLYARDLTSGKLSLL  325 (347)
T ss_dssp             SEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             CEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence            77776664 5899999  5566765543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=2.6e-22  Score=207.20  Aligned_cols=305  Identities=10%  Similarity=0.031  Sum_probs=192.3

Q ss_pred             eecCCccC---CcceEEEEEecCCCcEEEEeeCC---------CcEEEEECCCCCCccccccccccccceeccccCCCcE
Q 010390           44 VEHHGEET---PPLAVSFCKTSKNSHIFAVSDED---------GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAI  111 (512)
Q Consensus        44 ~~~~gh~~---~v~~v~~~~~s~~~~~latg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  111 (512)
                      ..+.+|..   .|.+++|   ||||++||+++.+         +.|.+||+.++..           ..+....+|...+
T Consensus        51 ~~~~~~~~~~~~v~~~~~---SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----------~~l~~~~~~~~~~  116 (723)
T 1xfd_A           51 VLIEGKKIESLRAIRYEI---SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-----------QSLDPPEVSNAKL  116 (723)
T ss_dssp             EEECTTTTTTTTCSEEEE---CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-----------EECCCTTCCSCCC
T ss_pred             EEeccccccccccceEEE---CCCCCEEEEEecCccceeecceeeEEEEECCCCce-----------EeccCCccccccc
Confidence            34445554   4888888   9999999998764         7888999987643           1233344566678


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCE------------------EEEEeeCCCCCeEEEEeCCC
Q 010390          112 FDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSI------------------KSLCSHPTNSDILVSGSRDG  173 (512)
Q Consensus       112 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v------------------~~l~~~~~~~~~l~s~~~dg  173 (512)
                      ..++|+|||++|++++. +.|++||+.+++.......+...+                  .+++|+|++ +.|++++.|+
T Consensus       117 ~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~  194 (723)
T 1xfd_A          117 QYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAIND  194 (723)
T ss_dssp             SBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEEC
T ss_pred             cccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECC
Confidence            99999999999999876 789999999988766555444333                  789999998 7777776543


Q ss_pred             ----------------------------------cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc
Q 010390          174 ----------------------------------SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA  219 (512)
Q Consensus       174 ----------------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (512)
                                                        .|++||+.+++.......                     ......+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~---------------------~~~~~~~  253 (723)
T 1xfd_A          195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP---------------------PDDPRMR  253 (723)
T ss_dssp             TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC---------------------CCCGGGS
T ss_pred             CccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC---------------------CccCCCc
Confidence                                              445555443332110000                     0011123


Q ss_pred             cccEEEEEEeecCCEEEEEeec---CCeEEEEeccCccceecccCCCccccccccccccCe----eEEEeCCCCCEEEE-
Q 010390          220 SMSITSVLYLKDEVSIATASAV---NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI----SSLSQDSNGVFLTA-  291 (512)
Q Consensus       220 ~~~v~~~~~~~~~~~l~~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~l~~-  291 (512)
                      ...+.+++|+||++.+++....   +..|.+||+.+++.....          ...+...+    ..++|+|||+.|+. 
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~----------~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH----------EDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE----------EEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE----------EeccCCEEeccCCCceEcCCCCeEEEE
Confidence            5678999999999988665432   357999999887654321          11112222    37899999997765 


Q ss_pred             -EecCC------eEEEEEc-ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCC-CCcee
Q 010390          292 -SCMDH------RIYLYNV-LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQA-DPIKL  359 (512)
Q Consensus       292 -~~~dg------~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~-~~~~~  359 (512)
                       +..++      .|.+||+ ..........+.... ......++|+|+|+.|+..+.+   +.++||++..... ....+
T Consensus       324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l  402 (723)
T 1xfd_A          324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCL  402 (723)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCS
T ss_pred             EecccCCCcceeEEEEEeccCCCCccceeEeecCC-eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCccee
Confidence             44666      5666773 332200022222111 1112236899999999765544   7899999875432 22333


Q ss_pred             cc---ccCCeEEEEeCCCCCCeEEE-EeCCC--cEEEEeCCCCc
Q 010390          360 KS---HDGEVTAVNWCPNEAGKIVT-SSDDY--TVRLWSLENSR  397 (512)
Q Consensus       360 ~~---h~~~v~~v~~~~~~~~~l~s-~~~dg--~i~vwd~~~~~  397 (512)
                      ..   |...+..++|+|++ ++|+. .+..+  ...+++..++.
T Consensus       403 ~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~p~~~~~~~~~~~  445 (723)
T 1xfd_A          403 SCDLVENCTYFSASFSHSM-DFFLLKCEGPGVPMVTVHNTTDKK  445 (723)
T ss_dssp             STTSSSSCCCCEEEECTTS-SEEEEECCSSSSCCEEEEETTTCC
T ss_pred             cccccCCCCeEEEEECCCC-CEEEEEccCCCCCeEEEEECCCCC
Confidence            33   67778999999999 55554 33333  23445554443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=4.1e-22  Score=186.17  Aligned_cols=283  Identities=8%  Similarity=0.025  Sum_probs=182.7

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCC-CcEEEEECC--CCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDED-GYVSLFDSR--RKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  124 (512)
                      .|...+.+++|   +|+|++|++++.+ +.|.+|+++  ++..           ..+..+..+. .+..++|+|++++|+
T Consensus        35 ~~~~~~~~~~~---spdg~~l~~~~~~~~~v~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~s~dg~~l~   99 (343)
T 1ri6_A           35 DVPGQVQPMVV---SPDKRYLYVGVRPEFRVLAYRIAPDDGAL-----------TFAAESALPG-SLTHISTDHQGQFVF   99 (343)
T ss_dssp             ECSSCCCCEEE---CTTSSEEEEEETTTTEEEEEEECTTTCCE-----------EEEEEEECSS-CCSEEEECTTSSEEE
T ss_pred             ecCCCCceEEE---CCCCCEEEEeecCCCeEEEEEecCCCCce-----------eeccccccCC-CCcEEEEcCCCCEEE
Confidence            46677888888   9999998888876 999999987  3321           2233344333 788999999999887


Q ss_pred             EEeC-CCcEEEEeCC---CCeeeecccCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          125 TASG-DQTIKIWDAE---KKKCTGALMGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       125 s~~~-dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      +++. ++.|.+||+.   ..+....+..+ ..+.+++|+|++ +.+++++ .++.|.+||+.+.........        
T Consensus       100 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--------  169 (343)
T 1ri6_A          100 VGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDP--------  169 (343)
T ss_dssp             EEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEE--------
T ss_pred             EEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeecc--------
Confidence            6665 8899999994   44455555544 468899999998 6666665 889999999975221110000        


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC--ccceecccCCCccccccccccccCe
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN--LKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                   ..........+..++|+|+++.+++++..++.|.+||++.  +........... .  ........+
T Consensus       170 -------------~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~-~--~~~~~~~~~  233 (343)
T 1ri6_A          170 -------------AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM-P--ENFSDTRWA  233 (343)
T ss_dssp             -------------EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS-C--TTCCSCCCE
T ss_pred             -------------cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecccc-C--ccccccCCc
Confidence                         0001112346788999999998888776799999999964  222111000000 0  000112346


Q ss_pred             eEEEeCCCCCEEEEEe-cCCeEEEEEcccCC--CCceEeeeeceeceeEEEEEECCCCCEEEEec-CCCCEEEEecC--C
Q 010390          278 SSLSQDSNGVFLTASC-MDHRIYLYNVLQLD--KGPIQHFSGCRIESFYVKSEICPNASHILSGS-SDGNAYVWQVN--K  351 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~--~  351 (512)
                      ..++|+|++++|+++. .++.|.+||+....  ...+..+...   ..+..++|+|++++|++++ .++.|.+|+++  +
T Consensus       234 ~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          234 ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred             cceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence            6899999999887554 78999999996321  1222222221   2256789999999888777 67999999665  3


Q ss_pred             CCCC-CceeccccCCeEEEEeCCCC
Q 010390          352 PQAD-PIKLKSHDGEVTAVNWCPNE  375 (512)
Q Consensus       352 ~~~~-~~~~~~h~~~v~~v~~~~~~  375 (512)
                      +... ...+.. .....+++|.++.
T Consensus       311 g~~~~~~~~~~-g~~p~~i~~~~~~  334 (343)
T 1ri6_A          311 GLLHEKGRYAV-GQGPMWVVVNAHE  334 (343)
T ss_dssp             TEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred             ceeeEcccccc-CCCCeeEEEEccc
Confidence            3221 112222 2345566666543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=6.3e-22  Score=184.04  Aligned_cols=253  Identities=8%  Similarity=0.055  Sum_probs=176.0

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeC-CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDE-DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      +...+ +++|   +|||++|++++. ++.|.+||..++..            ....+..+.....+++|+|++++|+++.
T Consensus        39 ~~~~~-~~~~---s~dg~~l~~~~~~~~~i~~~d~~~~~~------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~  102 (331)
T 3u4y_A           39 GYDFV-DTAI---TSDCSNVVVTSDFCQTLVQIETQLEPP------------KVVAIQEGQSSMADVDITPDDQFAVTVT  102 (331)
T ss_dssp             CCCEE-EEEE---CSSSCEEEEEESTTCEEEEEECSSSSC------------EEEEEEECSSCCCCEEECTTSSEEEECC
T ss_pred             cCCcc-eEEE---cCCCCEEEEEeCCCCeEEEEECCCCce------------eEEecccCCCCccceEECCCCCEEEEec
Confidence            34444 7777   999996666654 88999999987632            1334445556665599999999999655


Q ss_pred             CCC---cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc-EEEEeCCCCCCCCCccccceeeecccccc
Q 010390          128 GDQ---TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS-FAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       128 ~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      .++   .|.+||+.+++.+..+..+ ....+++|+|++..++++...++. |.+|++..........             
T Consensus       103 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-------------  168 (331)
T 3u4y_A          103 GLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-------------  168 (331)
T ss_dssp             CSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-------------
T ss_pred             CCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-------------
Confidence            553   8999999999988877644 467999999998556666667688 9999987543211000             


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc---eecccCCCccccccccccccCeeEE
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA---QITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                .........+..++|+|+++.+++++..++.|.+||+.+++.   ...            ......+..+
T Consensus       169 ----------~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~------------~~~~~~~~~~  226 (331)
T 3u4y_A          169 ----------QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA------------VGTNNLPGTI  226 (331)
T ss_dssp             ----------EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE------------EECSSCCCCE
T ss_pred             ----------CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee------------ccCCCCCceE
Confidence                      011122345789999999998888777789999999988775   322            1123567889


Q ss_pred             EeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeec----e-eceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCCC
Q 010390          281 SQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGC----R-IESFYVKSEICPNASHILSG-SSDGNAYVWQVNKPQ  353 (512)
Q Consensus       281 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~----~-~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~  353 (512)
                      +|+|+|++|++++ .++.|.+||+.+.....+..+...    . .......++|+|++++|+++ ..++.|.+||+....
T Consensus       227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            9999999777665 578899999876443223322221    0 00111347999999988654 556799999997653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=2e-22  Score=189.17  Aligned_cols=259  Identities=11%  Similarity=0.103  Sum_probs=184.0

Q ss_pred             CCcEEEEEEecCCCEEEEEeC-------CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390          108 QNAIFDLCWIKEDTNILTASG-------DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL  180 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  180 (512)
                      ...+..++|+|++++|++++.       ++.|.+||..+++.+..+.. ...+..++|+|++..++++...++.|.+||.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            457889999999999987774       56899999999988887764 3457889999998446666677899999999


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe-ecCCeEEEEeccCccceecc
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS-AVNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g-~~dg~i~iwd~~~~~~~~~~  259 (512)
                      .+++.........                  ...........+.+++|+|+++.+++++ ..++.|.+||..+++.....
T Consensus       119 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~  180 (353)
T 3vgz_A          119 KTGEVKGRLVLDD------------------RKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI  180 (353)
T ss_dssp             TTCCEEEEEESCC------------------CCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             CCCeeEEEEecCC------------------CccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence            8765422111000                  0000000112378899999999888766 35789999999987765432


Q ss_pred             cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee--ceeceeEEEEEECCCCCEEEE
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG--CRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~  337 (512)
                                 ..+...+..++|+|++++|++++.++.|.+||+.+...  ...+..  ......+..++|+|+++++++
T Consensus       181 -----------~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  247 (353)
T 3vgz_A          181 -----------QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFI  247 (353)
T ss_dssp             -----------CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred             -----------cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence                       22334478899999999999999999999999866432  222221  112345667999999997766


Q ss_pred             ecC-CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          338 GSS-DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       338 g~~-dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ++. ++.|.+||..+++.. ..+....  ..+++|+|++..++++...++.|.+||+.+++.+..
T Consensus       248 ~~~~~~~v~~~d~~~~~~~-~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~  309 (353)
T 3vgz_A          248 TDSKAAEVLVVDTRNGNIL-AKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT  309 (353)
T ss_dssp             EESSSSEEEEEETTTCCEE-EEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EeCCCCEEEEEECCCCcEE-EEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence            654 589999999887653 3333222  256999999933555666799999999998876654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=1.6e-21  Score=183.04  Aligned_cols=275  Identities=8%  Similarity=0.045  Sum_probs=193.7

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeC-------CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDE-------DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      ....+..+++   +|+|++|++++.       ++.|.+||..+++.             +..+.. ...+..++|+|+++
T Consensus        39 ~~~~~~~~~~---s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-------------~~~~~~-~~~~~~~~~s~dg~  101 (353)
T 3vgz_A           39 VGKGAYEMAY---SQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-------------TQAIHN-DLKPFGATINNTTQ  101 (353)
T ss_dssp             EESSEEEEEE---ETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-------------EEEEEE-SSCCCSEEEETTTT
T ss_pred             hccCccceEE---CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-------------EEEEec-CCCcceEEECCCCC
Confidence            3445677777   999998888764       56899999987643             223322 34577899999999


Q ss_pred             EEE-EEeCCCcEEEEeCCCCeeeecccCcCCC---------EEEEEeeCCCCCeEEEEe--CCCcEEEEeCCCCCCCCCc
Q 010390          122 NIL-TASGDQTIKIWDAEKKKCTGALMGHTGS---------IKSLCSHPTNSDILVSGS--RDGSFAIWDLRCKSSPKSN  189 (512)
Q Consensus       122 ~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~---------v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~  189 (512)
                      +++ +...++.|.+||..+++.+..+..+...         +.+++|+|++ +.+++++  .++.|.+||..+++...  
T Consensus       102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~~~--  178 (353)
T 3vgz_A          102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKLKT--  178 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEEEE--
T ss_pred             EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCceEE--
Confidence            665 4555799999999999888777654322         7889999998 5555444  57899999998654321  


Q ss_pred             cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390          190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA  269 (512)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  269 (512)
                                               ....+...+.+++|+|+++.++++. .++.|.+||..+++........       
T Consensus       179 -------------------------~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~-------  225 (353)
T 3vgz_A          179 -------------------------AIQNTGKMSTGLALDSEGKRLYTTN-ADGELITIDTADNKILSRKKLL-------  225 (353)
T ss_dssp             -------------------------EECCCCTTCCCCEEETTTTEEEEEC-TTSEEEEEETTTTEEEEEEECC-------
T ss_pred             -------------------------EecCCCCccceEEECCCCCEEEEEc-CCCeEEEEECCCCeEEEEEEcC-------
Confidence                                     1112334577899999999988865 6899999999988765443211       


Q ss_pred             ccccccCeeEEEeCCCCCEEEEEecC-CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE-ecCCCCEEEE
Q 010390          270 KETRLHGISSLSQDSNGVFLTASCMD-HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS-GSSDGNAYVW  347 (512)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw  347 (512)
                      ...+...+..++|+|+++++++++.+ +.|.+||+.+.+  .+..+....    ...++|+|+++++++ ...++.|.+|
T Consensus       226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~  299 (353)
T 3vgz_A          226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN--ILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVI  299 (353)
T ss_dssp             CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC--EEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEE
Confidence            11234457889999999987777654 999999986643  233333221    134899999996654 4468999999


Q ss_pred             ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390          348 QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD  385 (512)
Q Consensus       348 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d  385 (512)
                      |..+++.. ..+.. ...+.+++|+|++ ++|+.+..+
T Consensus       300 d~~~~~~~-~~~~~-~~~~~~~~~s~dg-~~l~v~~~~  334 (353)
T 3vgz_A          300 DAKSYKVV-KTFDT-PTHPNSLALSADG-KTLYVSVKQ  334 (353)
T ss_dssp             ETTTTEEE-EEEEC-CSEEEEEEECTTS-CEEEEEEEC
T ss_pred             ECCCCeEE-EEEec-CCCCCeEEEcCCC-CEEEEEEcc
Confidence            99887652 33333 3478999999999 655555544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=6e-21  Score=179.67  Aligned_cols=306  Identities=9%  Similarity=0.048  Sum_probs=190.9

Q ss_pred             CCCcEEEEee----CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC----CcEEE
Q 010390           63 KNSHIFAVSD----EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD----QTIKI  134 (512)
Q Consensus        63 ~~~~~latg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~i~i  134 (512)
                      ++..++++|+    .++.|.+|+++.....         ...+...  +...+..++|+|++++|++++.+    +.|.+
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~---------~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~   79 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGE---------SLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSA   79 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCC---------EEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEE
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCC---------EEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEE
Confidence            3345666663    4568999987542110         1122223  66778889999999999998876    79999


Q ss_pred             EeCCC--Ce--eeecccCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390          135 WDAEK--KK--CTGALMGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ  209 (512)
Q Consensus       135 wd~~~--~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (512)
                      |++..  ++  .+.....+......+++  ++ .+|++++ .++.|.+|++.............  .           ..
T Consensus        80 ~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~--~-----------~~  143 (361)
T 3scy_A           80 FAFDKEKGTLHLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSITVFPIGQDGALLPASDVI--E-----------FK  143 (361)
T ss_dssp             EEEETTTTEEEEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEEEEEBCTTSCBCSCSEEE--E-----------CC
T ss_pred             EEEeCCCCcEEEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEEEEEeCCCCcCcccceeE--E-----------cc
Confidence            98765  43  33344445566777887  55 5555554 68899999997544322111000  0           00


Q ss_pred             cccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc------eecccCCCccccccccccccCeeEEEeC
Q 010390          210 SKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA------QITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       210 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                      .........+...+.+++|+|+++.+++++..++.|.+|++.....      ........    .........+..++|+
T Consensus       144 g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~s  219 (361)
T 3scy_A          144 GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE----AFKVAPGSGPRHLIFN  219 (361)
T ss_dssp             CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE----EEECCTTCCEEEEEEC
T ss_pred             CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc----ceecCCCCCCeEEEEc
Confidence            0000011122345788999999998888776789999999875442      10000000    0112223457889999


Q ss_pred             CCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeece-eceeEEEEEECCCCCEEEEecC--CCCEEEEecCC--CCC-CC
Q 010390          284 SNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCR-IESFYVKSEICPNASHILSGSS--DGNAYVWQVNK--PQA-DP  356 (512)
Q Consensus       284 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~--dg~i~iw~~~~--~~~-~~  356 (512)
                      |+|+++++++ .++.|.+||+.......+..+.... .......++|+|+|++|+++..  ++.|.+|++..  +.. ..
T Consensus       220 pdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~  299 (361)
T 3scy_A          220 SDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV  299 (361)
T ss_dssp             TTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred             CCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence            9999888777 6899999998743222222222211 1123457999999999866655  48899999962  332 11


Q ss_pred             ceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEE--eCCCCccccc
Q 010390          357 IKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLW--SLENSRCSSM  401 (512)
Q Consensus       357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vw--d~~~~~~~~~  401 (512)
                      ..+.. ...+.+++|+|++ ++|++++ .++.|.+|  |..++++...
T Consensus       300 ~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          300 GYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQIFERDQATGLLTDI  345 (361)
T ss_dssp             EEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred             eEecC-CCCCceEEECCCC-CEEEEEECCCCCEEEEEEECCCCcEeec
Confidence            22222 4578899999999 7777766 67899996  5556765544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=3.7e-22  Score=213.52  Aligned_cols=280  Identities=12%  Similarity=0.044  Sum_probs=211.2

Q ss_pred             ccCCcceEEEEEec-CCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC-cEEEEEEecCCCEEEEE
Q 010390           49 EETPPLAVSFCKTS-KNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN-AIFDLCWIKEDTNILTA  126 (512)
Q Consensus        49 h~~~v~~v~~~~~s-~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~s~  126 (512)
                      |.+.+.+++|   | |||++||+++ ++.|.+|+..++.              ...+..|.. .+..++|+ ||+.|+++
T Consensus       294 ~~~~v~~~~~---S~pdG~~la~~~-~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~s-dg~~l~~~  354 (1045)
T 1k32_A          294 SIPSKFAEDF---SPLDGDLIAFVS-RGQAFIQDVSGTY--------------VLKVPEPLRIRYVRRGGD-TKVAFIHG  354 (1045)
T ss_dssp             ECGGGGEEEE---EECGGGCEEEEE-TTEEEEECTTSSB--------------EEECSCCSCEEEEEECSS-SEEEEEEE
T ss_pred             cccccceeee---cCCCCCEEEEEE-cCEEEEEcCCCCc--------------eEEccCCCcceEEeeeEc-CCCeEEEE
Confidence            3446888888   9 9999999988 8899999987653              233566777 89999999 99999999


Q ss_pred             eCCCcEE-EEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          127 SGDQTIK-IWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       127 ~~dg~i~-iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      +.++.+. +||+.+++..... +|...+..++|+|++ ..|++++.++.|++||+.+++...                  
T Consensus       355 s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~------------------  414 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTV------------------  414 (1045)
T ss_dssp             ETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEE------------------
T ss_pred             ECCCceEEEEECCCCCceEec-CCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceEE------------------
Confidence            8888888 9999887655444 788899999999998 899999999999999998654321                  


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecC---------CeEEEEeccCccceecccCCCccccccccccccC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN---------SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                               ....|...+.+++|+|+++.+++++..+         +.|++||+.+++..            ....+...
T Consensus       415 ---------~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~------------~l~~~~~~  473 (1045)
T 1k32_A          415 ---------IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF------------AATTENSH  473 (1045)
T ss_dssp             ---------EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE------------ECSCSSSB
T ss_pred             ---------eccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE------------EeeCCCcc
Confidence                     2224667789999999999998876432         58999999887622            24445566


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCC------------------C-----------------------ceEeee
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDK------------------G-----------------------PIQHFS  315 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------~-----------------------~~~~~~  315 (512)
                      +..++|+|+|++|+.++.++...+|+......                  .                       .+..+.
T Consensus       474 ~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~  553 (1045)
T 1k32_A          474 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPIN  553 (1045)
T ss_dssp             EEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECS
T ss_pred             cCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcC
Confidence            78899999999999999887777776432110                  0                       000111


Q ss_pred             eceeceeEEEEEECCCCCEEEE-------------ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEE
Q 010390          316 GCRIESFYVKSEICPNASHILS-------------GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       316 ~~~~~~~~~~~~~s~~~~~l~~-------------g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~  382 (512)
                        .....+..++++|+++++++             ......|.+||+.+++.  ..+.   ..+.+++|+||| +.|+++
T Consensus       554 --~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~---~~v~~~~~S~DG-~~l~~~  625 (1045)
T 1k32_A          554 --VDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV--TEVK---NNLTDLRLSADR-KTVMVR  625 (1045)
T ss_dssp             --CCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE--EEEE---EEEEEEEECTTS-CEEEEE
T ss_pred             --CCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcE--EEee---cCcceEEECCCC-CEEEEE
Confidence              11234667899999987875             12245688888877654  2333   568899999999 888888


Q ss_pred             eCCCcEEEEeCCCCc
Q 010390          383 SDDYTVRLWSLENSR  397 (512)
Q Consensus       383 ~~dg~i~vwd~~~~~  397 (512)
                      +.| .|++||+.+++
T Consensus       626 ~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          626 KDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             ETT-SCEEEEESSCT
T ss_pred             cCC-cEEEEeCccCc
Confidence            877 79999998887

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=1.9e-21  Score=186.56  Aligned_cols=219  Identities=13%  Similarity=0.122  Sum_probs=153.2

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccc--cccccceeccccCCCcEEEEEEecCCCEEE----
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRE--NAEKARISDWVAHQNAIFDLCWIKEDTNIL----  124 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~----  124 (512)
                      ..+..+++   ++++.++++|+.+| |+||+.............  ............|...|++++|+|++++|+    
T Consensus        37 ~~~n~lav---s~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~  112 (434)
T 2oit_A           37 ERSSLLAV---SNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM  112 (434)
T ss_dssp             SCCBCEEE---ETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred             CCccEEEE---ecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence            45677777   89999999999888 999886432110000000  000000111124667899999999999999    


Q ss_pred             EEeCCCcEEEEeCCCC--------e---eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          125 TASGDQTIKIWDAEKK--------K---CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~--------~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      +|+.|+.|+|||+.++        +   .+..+.+|...|.+++|+|+++.+|++++.||+|++||++++..        
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~--------  184 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK--------  184 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE--------
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc--------
Confidence            7889999999998664        1   24566779999999999998558999999999999999986521        


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR  273 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  273 (512)
                                         ......|...|.+++|+|++..+++ |+.||.|++||++ ++.......+..    ....|
T Consensus       185 -------------------~~~~~~~~~~v~~v~wspdg~~las-gs~dg~v~iwd~~-~~~~~~~~~~~~----~~~~~  239 (434)
T 2oit_A          185 -------------------VCATLPSTVAVTSVCWSPKGKQLAV-GKQNGTVVQYLPT-LQEKKVIPCPPF----YESDH  239 (434)
T ss_dssp             -------------------EEEEECGGGCEEEEEECTTSSCEEE-EETTSCEEEECTT-CCEEEEECCCTT----CCTTS
T ss_pred             -------------------eeeccCCCCceeEEEEcCCCCEEEE-EcCCCcEEEEccC-CcccccccCCcc----cCCCC
Confidence                               1122346778999999999999987 5589999999998 332222111100    01123


Q ss_pred             ccCeeEEEeCCCCCEEEEEe-cCC------eEEEEEcccC
Q 010390          274 LHGISSLSQDSNGVFLTASC-MDH------RIYLYNVLQL  306 (512)
Q Consensus       274 ~~~i~~~~~~~~~~~l~~~~-~dg------~i~i~d~~~~  306 (512)
                      ...|.++.|++++.++++.+ .+|      .+++|++...
T Consensus       240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            44799999999888776543 443      3899999764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=5.4e-22  Score=181.14  Aligned_cols=240  Identities=11%  Similarity=0.008  Sum_probs=171.3

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCC-CCCccccccccccccceeccccC-CCcEEEEEEecCCCE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRR-KLPSFACHRENAEKARISDWVAH-QNAIFDLCWIKEDTN  122 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~  122 (512)
                      .+.+|...|.+++|   +|||++|++++ ++.|++||+.+ +..             ......| ...|.+++|+|++++
T Consensus        36 ~~~~~~~~v~~~~~---spdg~~l~~~~-~~~i~~~d~~~~~~~-------------~~~~~~~~~~~~~~~~~spdg~~   98 (297)
T 2ojh_A           36 VVWQTPELFEAPNW---SPDGKYLLLNS-EGLLYRLSLAGDPSP-------------EKVDTGFATICNNDHGISPDGAL   98 (297)
T ss_dssp             EEEEESSCCEEEEE---CTTSSEEEEEE-TTEEEEEESSSCCSC-------------EECCCTTCCCBCSCCEECTTSSE
T ss_pred             eeccCCcceEeeEE---CCCCCEEEEEc-CCeEEEEeCCCCCCc-------------eEeccccccccccceEECCCCCE
Confidence            34457888999999   99999999987 88999999987 543             2333344 478899999999999


Q ss_pred             EEEEeC--CCcEEEE--eCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          123 ILTASG--DQTIKIW--DAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       123 l~s~~~--dg~i~iw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      |++++.  ++.+.||  ++.+++ ...+..+ ..+..++|+|++..++++++.|+.+++|+++.....            
T Consensus        99 l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~------------  164 (297)
T 2ojh_A           99 YAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV------------  164 (297)
T ss_dssp             EEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC------------
T ss_pred             EEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc------------
Confidence            999883  3445555  555554 3344433 358999999998444458888999999997532111            


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCccccccccccccCe
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                    ...+..+...+.++.|+|+++.+++++..++.+.+|+++. .....           ....+...+
T Consensus       165 --------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~  219 (297)
T 2ojh_A          165 --------------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE-----------RITDSAYGD  219 (297)
T ss_dssp             --------------EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE-----------ECCCCSEEE
T ss_pred             --------------ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE-----------EEecCCccc
Confidence                          1123345668899999999999988776689999998863 22222           233445678


Q ss_pred             eEEEeCCCCCEEEEEecC-----------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390          278 SSLSQDSNGVFLTASCMD-----------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG  342 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  342 (512)
                      ..++|+|++++|++++.+           +.|.+||+...+...+..+.++  ...+..++|+|++++|++++.+.
T Consensus       220 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          220 WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG--QGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES--TTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCC--CcccccceECCCCCEEEEEEecc
Confidence            899999999999888765           5699999876544334433333  23455689999999998876653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.89  E-value=5.5e-22  Score=199.15  Aligned_cols=273  Identities=9%  Similarity=-0.010  Sum_probs=189.5

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeC-CCcEEEEECCCCCCccccccccccccceeccccCC-CcEEEEEEecCCCEEEEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDE-DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCWIKEDTNILTA  126 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~  126 (512)
                      +..+|++|+|   +|||++||+++. ||.+.||+++++.              ...+..|. ..+..++|+|| +.++++
T Consensus        20 ~~~~~~~~~~---~~DG~~la~~s~~~g~~~lw~~~~g~--------------~~~lt~~~~~~~~~~~~spd-~~l~~~   81 (582)
T 3o4h_A           20 IAVEKYSLQG---VVDGDKLLVVGFSEGSVNAYLYDGGE--------------TVKLNREPINSVLDPHYGVG-RVILVR   81 (582)
T ss_dssp             HHSCEEEEEE---EETTTEEEEEEEETTEEEEEEEETTE--------------EEECCSSCCSEECEECTTCS-EEEEEE
T ss_pred             hccchheeec---CCCCCeEEEEEccCCceeEEEEcCCC--------------cEeeecccccccccccCCCC-eEEEEe
Confidence            3667999999   999999999876 9999999985542              33344555 68999999999 777776


Q ss_pred             eC---CCcEEEEeCCC---CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          127 SG---DQTIKIWDAEK---KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       127 ~~---dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      +.   +....||.+..   +... .+.... .+...+|+|++...+++.+.++.+.+||+.+++...             
T Consensus        82 ~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-------------  146 (582)
T 3o4h_A           82 DVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-------------  146 (582)
T ss_dssp             ECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-------------
T ss_pred             ccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-------------
Confidence            64   45556654432   2222 332222 344668888885555555555666799987653211             


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecC----CeEEEEeccCccceecccCCCccccccccccccC
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN----SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                     +..+..  .+++|+|||+.+++++. +    +.|++||+.+++..            .+..+...
T Consensus       147 ---------------l~~~~~--~~~~~spDG~~la~~~~-~~~~~~~i~~~d~~~g~~~------------~l~~~~~~  196 (582)
T 3o4h_A          147 ---------------LARLPG--FGFVSDIRGDLIAGLGF-FGGGRVSLFTSNLSSGGLR------------VFDSGEGS  196 (582)
T ss_dssp             ---------------EEEESS--CEEEEEEETTEEEEEEE-EETTEEEEEEEETTTCCCE------------EECCSSCE
T ss_pred             ---------------eecCCC--ceEEECCCCCEEEEEEE-cCCCCeEEEEEcCCCCCce------------EeecCCCc
Confidence                           111112  78999999999997653 4    67999999877654            24455566


Q ss_pred             eeEEEeCCCCCEEEEEecCC--eEEEEEcccCCCCceEeeeecee--ce----eEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          277 ISSLSQDSNGVFLTASCMDH--RIYLYNVLQLDKGPIQHFSGCRI--ES----FYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~--~~----~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                      +..++|+|||+.|+++..++  .|++||+.+....   .+..+..  ..    .....+|+|||.++++++.++.+++|+
T Consensus       197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE---DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE---ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE---EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence            89999999999999888888  8999998764322   2332211  11    112234999998889999999999999


Q ss_pred             cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC---cEEEEeCCC
Q 010390          349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY---TVRLWSLEN  395 (512)
Q Consensus       349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg---~i~vwd~~~  395 (512)
                      +  ++..    ..+.+.|.+++|+ ++ .++++++.+.   .+.+||..+
T Consensus       274 ~--g~~~----~~~~~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          274 D--GERV----EAPQGNHGRVVLW-RG-KLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             T--TEEE----CCCSSEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC
T ss_pred             E--CCee----ccCCCceEEEEec-CC-EEEEEEcCCCCCCeEEEEcCCC
Confidence            9  3321    1345679999999 88 7888887774   477777764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=2.4e-21  Score=181.43  Aligned_cols=279  Identities=8%  Similarity=0.012  Sum_probs=183.7

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcEEEEEEecCCCEEE-EEeCCCcEEEEeCCC
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCWIKEDTNIL-TASGDQTIKIWDAEK  139 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~  139 (512)
                      ++++.++++++.++.|.+||..+++.             +..+..+. ..+..++|+|++++++ ++..++.|.+||+.+
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t   74 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTV-------------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT   74 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEE-------------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcE-------------EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC
Confidence            88999999999999999999977632             33333322 2577899999998765 555689999999999


Q ss_pred             CeeeecccCcC------CCEEEEEeeCCCCCeEEEEeCC------------CcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          140 KKCTGALMGHT------GSIKSLCSHPTNSDILVSGSRD------------GSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       140 ~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      ++.+..+..+.      ..+.+++|+|++ ++|++++.+            +.|.+||+.+++.....            
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------------  141 (349)
T 1jmx_B           75 CKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV------------  141 (349)
T ss_dssp             TEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS------------
T ss_pred             CcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCcccccee------------
Confidence            98877665322      237889999998 777777755            89999999764321110            


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc-------------c
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS-------------S  268 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------------~  268 (512)
                                   ....+...+.+++|+|+++ ++++   ++.|.+||..+++.............             .
T Consensus       142 -------------~~~~~~~~~~~~~~s~dg~-l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (349)
T 1jmx_B          142 -------------RTFPMPRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ  204 (349)
T ss_dssp             -------------EEEECCSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCC
T ss_pred             -------------eeccCCCcccceeECCCCc-EEEc---cCcEEEEeCCCCceeccccccccCCccccCccceeeecCC
Confidence                         0111233578899999999 6553   34499999988776543321110000             0


Q ss_pred             cccccccCeeEEEeCCCCCE-----------EEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEE
Q 010390          269 AKETRLHGISSLSQDSNGVF-----------LTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHIL  336 (512)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~-----------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~  336 (512)
                      ...........+++++++..           +.....++.+.+|++..             ....+..++++| ++++++
T Consensus       205 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~sp~dg~~l~  271 (349)
T 1jmx_B          205 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-------------LTELYFTGLRSPKDPNQIY  271 (349)
T ss_dssp             CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-------------CSSCEEEEEECSSCTTEEE
T ss_pred             CcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc-------------CCCcceeeEecCCCCCEEE
Confidence            00000002334556554321           11222334455554421             223466789999 999998


Q ss_pred             EecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       337 ~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ++  ++.|++||+.+++.. ..+. ....+.+++|+|++ .+|++++.++.|++||+.+++.+..
T Consensus       272 ~~--~~~v~~~d~~~~~~~-~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~~~~~  331 (349)
T 1jmx_B          272 GV--LNRLAKYDLKQRKLI-KAAN-LDHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLEKVKN  331 (349)
T ss_dssp             EE--ESEEEEEETTTTEEE-EEEE-CSSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             EE--cCeEEEEECccCeEE-EEEc-CCCCccceEECCCC-CEEEEecCCCeEEEEeccccceeee
Confidence            88  889999999886642 2332 23457899999999 6777788899999999999886654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=5.8e-20  Score=172.92  Aligned_cols=282  Identities=11%  Similarity=0.067  Sum_probs=181.1

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCC----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDED----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  124 (512)
                      +...+..++|   +|||++|++++.+    +.|.+|+++....         ....+.....+......+++  ++++|+
T Consensus        48 ~~~~p~~l~~---spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---------~~~~~~~~~~~~~~p~~~~~--dg~~l~  113 (361)
T 3scy_A           48 EVANPSYLIP---SADGKFVYSVNEFSKDQAAVSAFAFDKEKG---------TLHLLNTQKTMGADPCYLTT--NGKNIV  113 (361)
T ss_dssp             ECSCCCSEEE---CTTSSEEEEEECCSSTTCEEEEEEEETTTT---------EEEEEEEEECSSSCEEEEEE--CSSEEE
T ss_pred             cCCCCceEEE---CCCCCEEEEEEccCCCCCcEEEEEEeCCCC---------cEEEeeEeccCCCCcEEEEE--CCCEEE
Confidence            6677778888   9999999998875    7999999865311         01223344445667788888  888887


Q ss_pred             EEe-CCCcEEEEeCCCCeeeeccc--------------CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC----
Q 010390          125 TAS-GDQTIKIWDAEKKKCTGALM--------------GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS----  185 (512)
Q Consensus       125 s~~-~dg~i~iwd~~~~~~~~~~~--------------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----  185 (512)
                      +++ .++.|.+|++.....+..+.              .+...+.+++|+|++..++++...++.|.+|++.....    
T Consensus       114 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~  193 (361)
T 3scy_A          114 TANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK  193 (361)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             EEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence            766 57899999997543332211              12334688999999833555555688999999875432    


Q ss_pred             C-CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390          186 P-KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA  264 (512)
Q Consensus       186 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~  264 (512)
                      . ....                   .............+..++|+|+++.+++++..++.|.+||+.++.........  
T Consensus       194 ~~l~~~-------------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~--  252 (361)
T 3scy_A          194 EKFLTK-------------------GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA--  252 (361)
T ss_dssp             CCCEEE-------------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE--
T ss_pred             cceeec-------------------ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe--
Confidence            0 0000                   00000111223457889999999999887767899999999865432211000  


Q ss_pred             cccccccccccCeeEEEeCCCCCEEEEEecC--CeEEEEEcccCCCC--ceEeeeeceeceeEEEEEECCCCCEEEEec-
Q 010390          265 ESSSAKETRLHGISSLSQDSNGVFLTASCMD--HRIYLYNVLQLDKG--PIQHFSGCRIESFYVKSEICPNASHILSGS-  339 (512)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-  339 (512)
                          ....+......++|+|||++|+++..+  +.|.+|++......  .+..+..   ...+..++|+|+|++|++++ 
T Consensus       253 ----~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          253 ----ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             ----SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEET
T ss_pred             ----cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEEC
Confidence                112223446799999999999777755  89999998532222  2222222   23456799999999888776 


Q ss_pred             CCCCEEEEecC--CCCCCCceeccccCCeEEEEeC
Q 010390          340 SDGNAYVWQVN--KPQADPIKLKSHDGEVTAVNWC  372 (512)
Q Consensus       340 ~dg~i~iw~~~--~~~~~~~~~~~h~~~v~~v~~~  372 (512)
                      .++.|.+|+++  +++........+...+.||.|.
T Consensus       326 ~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          326 DTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            67889997665  4432111112244578888885

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=1.8e-20  Score=175.34  Aligned_cols=260  Identities=12%  Similarity=0.096  Sum_probs=170.3

Q ss_pred             CCccCCcceEEEEEecCCCcEEEEeeC---CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           47 HGEETPPLAVSFCKTSKNSHIFAVSDE---DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        47 ~gh~~~v~~v~~~~~s~~~~~latg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      .++...+..++|   +|||+ |++++.   ++.|.+||+.++..           ..+..+..+...+..++|+|++++|
T Consensus        36 ~~~~~~p~~~a~---spdg~-l~~~~~~~~~~~v~~~~~~~g~~-----------~~~~~~~~~~~~p~~~a~spdg~~l  100 (347)
T 3hfq_A           36 LAATQNPTYLAL---SAKDC-LYSVDKEDDEGGIAAWQIDGQTA-----------HKLNTVVAPGTPPAYVAVDEARQLV  100 (347)
T ss_dssp             EEECSCCCCEEE---CTTCE-EEEEEEETTEEEEEEEEEETTEE-----------EEEEEEEEESCCCSEEEEETTTTEE
T ss_pred             eeccCCcceEEE---ccCCe-EEEEEecCCCceEEEEEecCCcE-----------EEeeeeecCCCCCEEEEECCCCCEE
Confidence            345566778888   99999 554443   68999999965431           2344445577888999999999999


Q ss_pred             EEEe-CCCcEEEEeCCC-C--eeeecccC---------cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390          124 LTAS-GDQTIKIWDAEK-K--KCTGALMG---------HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC  190 (512)
Q Consensus       124 ~s~~-~dg~i~iwd~~~-~--~~~~~~~~---------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  190 (512)
                      ++++ .++.|.+|++.. +  +.+..+..         +...+.+++|+|++ +++++...++.|.+|++......... 
T Consensus       101 ~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~-  178 (347)
T 3hfq_A          101 YSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQ-  178 (347)
T ss_dssp             EEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEE-
T ss_pred             EEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEe-
Confidence            9887 689999999963 3  22332221         12358899999999 57777777889999999732111100 


Q ss_pred             ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC--ccceecccCCCccccc
Q 010390          191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN--LKAQITQAWPHAESSS  268 (512)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~  268 (512)
                                            ..........+..++|+|+++.+++++..++.|.+|++..  ++...........   
T Consensus       179 ----------------------~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~---  233 (347)
T 3hfq_A          179 ----------------------SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIP---  233 (347)
T ss_dssp             ----------------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSC---
T ss_pred             ----------------------eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecC---
Confidence                                  0000111235678999999998888777889999999885  3221110000000   


Q ss_pred             cccccccCeeEEEeCCCCCEEEE-EecCCeEEEEEcccC-CCCceEeeeeceeceeEEEEEECCCCCEEEEecC-CCCEE
Q 010390          269 AKETRLHGISSLSQDSNGVFLTA-SCMDHRIYLYNVLQL-DKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-DGNAY  345 (512)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~  345 (512)
                      ........+..++|+|+|++|++ ...++.|.+|++... ....+..+..+  ...+..++|+|+|++|++++. ++.|.
T Consensus       234 ~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~  311 (347)
T 3hfq_A          234 ADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNAT  311 (347)
T ss_dssp             TTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEE
Confidence            00011135788999999998755 456899999998632 11222222221  223567999999998877765 48899


Q ss_pred             EEecC
Q 010390          346 VWQVN  350 (512)
Q Consensus       346 iw~~~  350 (512)
                      +|+++
T Consensus       312 v~~~d  316 (347)
T 3hfq_A          312 LYARD  316 (347)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.87  E-value=2.9e-21  Score=183.84  Aligned_cols=292  Identities=12%  Similarity=0.086  Sum_probs=190.4

Q ss_pred             EeecCCccCCcce-----EEEEEecCCCcEEEEeeC-CCc--EEEEECCCCCCccccccccccccceeccccCCCcEEEE
Q 010390           43 TVEHHGEETPPLA-----VSFCKTSKNSHIFAVSDE-DGY--VSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDL  114 (512)
Q Consensus        43 ~~~~~gh~~~v~~-----v~~~~~s~~~~~latg~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  114 (512)
                      ...+..|......     .+|   ||||++||.++. +|.  |.+||+.++..             .....++...+..+
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~---SpDg~~l~~~~~~~g~~~l~~~d~~~g~~-------------~~lt~~~~~~~~~~   86 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCF---TRDGSKLLFGGAFDGPWNYYLLDLNTQVA-------------TQLTEGRGDNTFGG   86 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCB---CTTSCEEEEEECTTSSCEEEEEETTTCEE-------------EECCCSSCBCSSSC
T ss_pred             eEEecCCcccccchhhcCccC---CCCCCEEEEEEcCCCCceEEEEeCCCCce-------------EEeeeCCCCCccce
Confidence            4455555544443     556   999999999887 664  88888876532             33334555555567


Q ss_pred             EEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEE--eeCCCCCeEEEE----------------------e
Q 010390          115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLC--SHPTNSDILVSG----------------------S  170 (512)
Q Consensus       115 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--~~~~~~~~l~s~----------------------~  170 (512)
                      .|+||++.|+.++.++.|++||+.+++....+..+...+....  +++++ .+++..                      .
T Consensus        87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccC
Confidence            8999999999999999999999999987766665655554444  47877 666532                      2


Q ss_pred             CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee-cCCEEEEEeec-----CCe
Q 010390          171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAV-----NSI  244 (512)
Q Consensus       171 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~-----dg~  244 (512)
                      .+..|.+||+.+++..                            .+..+...+..+.|+| +++.++.+...     ...
T Consensus       166 ~~~~l~~~d~~~g~~~----------------------------~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~  217 (388)
T 3pe7_A          166 PCCRLMRVDLKTGEST----------------------------VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR  217 (388)
T ss_dssp             CCEEEEEEETTTCCEE----------------------------EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred             CcceEEEEECCCCceE----------------------------EeecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence            3467888888765421                            1223445688999999 99988876532     237


Q ss_pred             EEEEeccCccceecccCCCccccccccccc--cCeeEEEeCCCCCEEEEEec-CC----eEEEEEcccCCCCceEeeeec
Q 010390          245 VKFWDTRNLKAQITQAWPHAESSSAKETRL--HGISSLSQDSNGVFLTASCM-DH----RIYLYNVLQLDKGPIQHFSGC  317 (512)
Q Consensus       245 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~  317 (512)
                      |.++|........            +..+.  ..+....|+|||+.|+..+. ++    .|++||+.+.+...+..+.+.
T Consensus       218 l~~~d~~~~~~~~------------l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~  285 (388)
T 3pe7_A          218 MWLINEDGTNMRK------------VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC  285 (388)
T ss_dssp             EEEEETTSCCCEE------------SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE
T ss_pred             EEEEeCCCCceEE------------eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc
Confidence            8888876554322            11111  24678899999997765443 22    399999976544333333321


Q ss_pred             eece-eEEEEEECCCCCEEEEe---------cCCCCEEEEecCCCCCCCceeccccC-----------CeEEEEeCCCCC
Q 010390          318 RIES-FYVKSEICPNASHILSG---------SSDGNAYVWQVNKPQADPIKLKSHDG-----------EVTAVNWCPNEA  376 (512)
Q Consensus       318 ~~~~-~~~~~~~s~~~~~l~~g---------~~dg~i~iw~~~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~  376 (512)
                      .... .....+|+|||+.|+..         ..+..|++||+.+++.  ..+..|..           .+.+++|+||+ 
T Consensus       286 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~spDg-  362 (388)
T 3pe7_A          286 SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHDTSWKVFEGDRQVTHPHPSFTPDD-  362 (388)
T ss_dssp             EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE--EEEEECCCCCCCBTTBSSTTCCCCEECTTS-
T ss_pred             eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--EEeccccCcccccccccccCCCCccCCCCC-
Confidence            1000 00113689999988754         4466899999988654  34555554           57889999999 


Q ss_pred             CeEEEE-eCCCcEEEEeCC
Q 010390          377 GKIVTS-SDDYTVRLWSLE  394 (512)
Q Consensus       377 ~~l~s~-~~dg~i~vwd~~  394 (512)
                      +.|+.. ..+|...||.++
T Consensus       363 ~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          363 KQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             SEEEEEECTTSSCEEEEEE
T ss_pred             CEEEEEecCCCceeEEEEE
Confidence            555554 467777777654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=2.9e-21  Score=193.87  Aligned_cols=239  Identities=8%  Similarity=0.053  Sum_probs=174.9

Q ss_pred             CCcEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC---CCcEEEEeCCC-
Q 010390          108 QNAIFDLCWIKEDTNILTASG-DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR---DGSFAIWDLRC-  182 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~-  182 (512)
                      ..+|++++|+|||++|++++. ||+++||++.+++.......+...+..++|+|+  +++++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEecc
Confidence            568999999999999998877 999999999777665544434368999999987  67777765   45567766543 


Q ss_pred             -CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390          183 -KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~  261 (512)
                       .....                           .+ .....+...+|+|+++.++.++..++.+.+||+.+++....   
T Consensus        99 ~~g~~~---------------------------~l-~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l---  147 (582)
T 3o4h_A           99 RPGEEQ---------------------------RL-EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL---  147 (582)
T ss_dssp             STTCCE---------------------------EC-TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE---
T ss_pred             CCCccc---------------------------cc-cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe---
Confidence             21110                           00 01112346688999876554444566666999988764321   


Q ss_pred             CCccccccccccccCeeEEEeCCCCCEEEEEecC----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390          262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMD----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  337 (512)
                               ..+..  .+++|+|||++|++++.+    +.|++||+.+.+.   ..+..+  ...+..++|||||++|++
T Consensus       148 ---------~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~---~~l~~~--~~~~~~~~~SpDG~~l~~  211 (582)
T 3o4h_A          148 ---------ARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL---RVFDSG--EGSFSSASISPGMKVTAG  211 (582)
T ss_dssp             ---------EEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC---EEECCS--SCEEEEEEECTTSCEEEE
T ss_pred             ---------ecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc---eEeecC--CCccccceECCCCCEEEE
Confidence                     11112  789999999999988877    7899999876433   233333  234677999999999998


Q ss_pred             ecCCC--CEEEEecCCCCCCCceeccccCCeEEEE--------eCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          338 GSSDG--NAYVWQVNKPQADPIKLKSHDGEVTAVN--------WCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       338 g~~dg--~i~iw~~~~~~~~~~~~~~h~~~v~~v~--------~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      +..++  .|++||+.+++..  .+.+|...+..++        |+||| .++++++.|+.+++|++  ++.+.
T Consensus       212 ~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g~~~~  279 (582)
T 3o4h_A          212 LETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--GERVE  279 (582)
T ss_dssp             EECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--TEEEC
T ss_pred             ccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--CCeec
Confidence            88888  8999999887663  6677777777777        99999 89999999999999999  66554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=2e-20  Score=179.51  Aligned_cols=179  Identities=14%  Similarity=0.141  Sum_probs=132.7

Q ss_pred             ccCCcceEEEEEecCCCcEEE----EeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFA----VSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTNI  123 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~la----tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l  123 (512)
                      |.+.|.+++|   +|+|++||    +|+.|+.|+|||+.+......  ........+..+.+|...|.+++|+|+ +.+|
T Consensus        91 ~~~~v~~l~~---spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  165 (434)
T 2oit_A           91 MKFPIHHLAL---SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK--QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV  165 (434)
T ss_dssp             CSSCEEEEEE---CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC--SSCCCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred             CCCcccEEEE---cCCCCEEEEEEeccCCCceEEEEEccccccCCc--CCcceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence            4556888888   99999999    788999999999865310000  000001124567789999999999997 8899


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      ++++.||+|++||++++..+....+|...|.+++|+|++ .+|++|+.||.|++||++ +........            
T Consensus       166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~------------  231 (434)
T 2oit_A          166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPC------------  231 (434)
T ss_dssp             EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECC------------
T ss_pred             EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccC------------
Confidence            999999999999999987776777789999999999997 899999999999999987 221110000            


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCe------EEEEeccCcc
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSI------VKFWDTRNLK  254 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~------i~iwd~~~~~  254 (512)
                              .......|...+.++.|++++.++++.+..+|.      +++|++++..
T Consensus       232 --------~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          232 --------PPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             --------CTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             --------CcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence                    000001234589999999998888776655543      8999998653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.2e-20  Score=194.37  Aligned_cols=292  Identities=10%  Similarity=0.012  Sum_probs=188.0

Q ss_pred             eEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC---cEEEEEEecCCCEEEEEeC---
Q 010390           55 AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN---AIFDLCWIKEDTNILTASG---  128 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~s~~~~~l~s~~~---  128 (512)
                      +++|   +|||++++++ .||.|++||+.++..             ...+..|..   .|.+++|||||++|++++.   
T Consensus        20 ~~~~---s~dg~~~~~~-~d~~i~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~   82 (719)
T 1z68_A           20 FPNW---ISGQEYLHQS-ADNNIVLYNIETGQS-------------YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSK   82 (719)
T ss_dssp             CCEE---SSSSEEEEEC-TTSCEEEEESSSCCE-------------EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEE
T ss_pred             ccEE---CCCCeEEEEc-CCCCEEEEEcCCCcE-------------EEEEccccccccceeeEEECCCCCeEEEEecCce
Confidence            6777   9999766665 599999999987743             222233322   4889999999999998876   


Q ss_pred             ------CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          129 ------DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       129 ------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                            ++.|++||+.+++.+.... ....+..++|+|++ +.|+.+. |+.|++||+.+++........          
T Consensus        83 ~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~----------  149 (719)
T 1z68_A           83 LWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNG----------  149 (719)
T ss_dssp             CSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCC----------
T ss_pred             eEEeecceEEEEEECCCCcccccee-cCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCC----------
Confidence                  7899999999998732111 12468889999999 7777775 789999999876543211000          


Q ss_pred             ccccccccccceeccccc---------ccEEEEEEeecCCEEEEEeecCC------------------------------
Q 010390          203 GAHLLSQSKRVSRRKAAS---------MSITSVLYLKDEVSIATASAVNS------------------------------  243 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~g~~dg------------------------------  243 (512)
                              .......++.         ....++.|+|||+.|++++..++                              
T Consensus       150 --------~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~  221 (719)
T 1z68_A          150 --------RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKN  221 (719)
T ss_dssp             --------BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCC
T ss_pred             --------CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCC
Confidence                    0000001111         12358999999999998664322                              


Q ss_pred             ---eEEEEeccCccce--ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC----CeEEEEE----cccCCCCc
Q 010390          244 ---IVKFWDTRNLKAQ--ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD----HRIYLYN----VLQLDKGP  310 (512)
Q Consensus       244 ---~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~  310 (512)
                         .|++||+.+++..  .....+.     .+..+...+..++|+||++++++....    ..|.+||    +.+.+...
T Consensus       222 ~~~~l~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~  296 (719)
T 1z68_A          222 PVVRIFIIDTTYPAYVGPQEVPVPA-----MIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK  296 (719)
T ss_dssp             CEEEEEEEESSCHHHHCCEECCCCH-----HHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred             CeeEEEEEECCCCCccceeEccCCc-----cCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence               7889999887642  1110000     234566778999999998877764432    2488888    65443322


Q ss_pred             eEe--eeeceeceeEE-----EEEECCCCCEEEE--ecCCC--CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeE
Q 010390          311 IQH--FSGCRIESFYV-----KSEICPNASHILS--GSSDG--NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKI  379 (512)
Q Consensus       311 ~~~--~~~~~~~~~~~-----~~~~s~~~~~l~~--g~~dg--~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l  379 (512)
                      +..  ...+.  ..+.     .++|+|||+.|+.  ...+|  .|.+|++.+++  ...+..+...+..+.++ ++ ..|
T Consensus       297 ~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~-~~i  370 (719)
T 1z68_A          297 TQEHIEESRT--GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQ-DSL  370 (719)
T ss_dssp             GGEEEEECSS--SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CS-SEE
T ss_pred             EEecccccCC--ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-eC-CEE
Confidence            221  01111  1222     4789999996643  44555  46666776554  34555666678887777 77 555


Q ss_pred             EEEeC-----CCcEEEEeCCC
Q 010390          380 VTSSD-----DYTVRLWSLEN  395 (512)
Q Consensus       380 ~s~~~-----dg~i~vwd~~~  395 (512)
                      +..+.     ++.+++|.+..
T Consensus       371 ~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          371 FYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEEESCGGGCTTCBEEEEEEC
T ss_pred             EEEEecCCCCCceEEEEEEeC
Confidence            55444     48899998764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=1.1e-19  Score=171.12  Aligned_cols=254  Identities=9%  Similarity=0.067  Sum_probs=168.7

Q ss_pred             CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC-CCeeeecccCc-CCCEEEEEeeCCCCC-eEEEEe-------------
Q 010390          107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAE-KKKCTGALMGH-TGSIKSLCSHPTNSD-ILVSGS-------------  170 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~l~~~~~~~~-~l~s~~-------------  170 (512)
                      ....+..++|+|++++|++++.+ .|.+|++. +++........ .+.+.+++|+|++.. +++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            33467889999999999998888 89999997 77665432211 123556889999832 344553             


Q ss_pred             CCCcEEEEeCCC-CCCCCCccccceeeecccccccccccccccceec-ccccccEEEEEEeecCCEEEEEeecCCeEEEE
Q 010390          171 RDGSFAIWDLRC-KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR-KAASMSITSVLYLKDEVSIATASAVNSIVKFW  248 (512)
Q Consensus       171 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw  248 (512)
                      .+|.+.+|++.. ++.....                        ... ..+...+.+++|+|+++.++++...++.|.+|
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~------------------------~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~  172 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNV------------------------QNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTH  172 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEE------------------------EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCceEEEEccCCCCcCcceE------------------------eeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence            689999999974 2211000                        000 01345789999999999988765457899999


Q ss_pred             ecc-CccceecccCCCcccccccc--ccccCeeEEEeCCCCCEEEEEec-CCeEEEEEcccCCCCce---Eeeeecee--
Q 010390          249 DTR-NLKAQITQAWPHAESSSAKE--TRLHGISSLSQDSNGVFLTASCM-DHRIYLYNVLQLDKGPI---QHFSGCRI--  319 (512)
Q Consensus       249 d~~-~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~---~~~~~~~~--  319 (512)
                      |+. +++.....         ...  .+...+..++|+|+|++|++++. ++.|.+|++........   ..+.....  
T Consensus       173 ~~~~~g~~~~~~---------~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  243 (365)
T 1jof_A          173 RKLASGEVELVG---------SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             EECTTSCEEEEE---------EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             EECCCCCEEEee---------eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence            998 55432111         111  12456889999999999988774 68999998753222211   11111110  


Q ss_pred             --ce-------eEEEEE-ECCCCCEEEEecCCC------CEEEEecC-CCCCCCc---eeccccCCeEEEEeCC---CCC
Q 010390          320 --ES-------FYVKSE-ICPNASHILSGSSDG------NAYVWQVN-KPQADPI---KLKSHDGEVTAVNWCP---NEA  376 (512)
Q Consensus       320 --~~-------~~~~~~-~s~~~~~l~~g~~dg------~i~iw~~~-~~~~~~~---~~~~h~~~v~~v~~~~---~~~  376 (512)
                        ..       .+..++ |+|||++|+++..+.      .|.+|++. +++. ..   ....+...+..++|+|   ++ 
T Consensus       244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-~~~~~~~~~~~~~~~~~a~sp~~~dg-  321 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI-EKQLFLSPTPTSGGHSNAVSPCPWSD-  321 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-EEEEEEEECSSCCTTCCCEEECTTCT-
T ss_pred             CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-EEeeeeeecCCCCcccceecCCCcCC-
Confidence              01       467799 999999987765432      79999996 3332 11   1223455677889999   78 


Q ss_pred             CeEEEEeC-CCcEEEEeCCCC
Q 010390          377 GKIVTSSD-DYTVRLWSLENS  396 (512)
Q Consensus       377 ~~l~s~~~-dg~i~vwd~~~~  396 (512)
                      ++|++++. ++.|.+|+++..
T Consensus       322 ~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          322 EWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEETT
T ss_pred             CEEEEEEcCCCeEEEEEEchh
Confidence            78888876 489999999876

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=3.8e-19  Score=183.32  Aligned_cols=295  Identities=8%  Similarity=0.034  Sum_probs=194.2

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCC-----cEEEEEEecCCCEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQN-----AIFDLCWIKEDTNI  123 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~s~~~~~l  123 (512)
                      +.....+++|   +|||++|+++  ||.|++||+.++..             ...+.+|..     ....++|||||++|
T Consensus        15 ~~~~~~~~~w---~~dg~~~~~~--~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~Spdg~~l   76 (740)
T 4a5s_A           15 YRLKLYSLRW---ISDHEYLYKQ--ENNILVFNAEYGNS-------------SVFLENSTFDEFGHSINDYSISPDGQFI   76 (740)
T ss_dssp             SCCCCCCEEE---CSSSEEEEEE--TTEEEEEETTTCCE-------------EEEECTTTTTTCCSCCCEEEECTTSSEE
T ss_pred             ccccccccEE---CCCCcEEEEc--CCcEEEEECCCCce-------------EEEEechhhhhhcccccceEECCCCCEE
Confidence            3445678888   9999999987  89999999987743             222334432     33458999999999


Q ss_pred             EEEeCC---------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          124 LTASGD---------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       124 ~s~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      +.++.+         +.+.+||+.+++... +..|...+...+|+|+| +.|+.+. |+.|++||+.++.........  
T Consensus        77 ~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~~~lt~~g--  151 (740)
T 4a5s_A           77 LLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPSYRITWTG--  151 (740)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCSCC--
T ss_pred             EEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCceEEEcCCC--
Confidence            988876         567799999998654 66677889999999999 7777774 689999999876533211100  


Q ss_pred             eeecccccccccccccccceeccccc---------ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAAS---------MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                                      .......++.         .....+.|+|||+.|+....+++.+.+|++......         
T Consensus       152 ----------------~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~---------  206 (740)
T 4a5s_A          152 ----------------KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE---------  206 (740)
T ss_dssp             ----------------BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST---------
T ss_pred             ----------------CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC---------
Confidence                            0000001111         233468999999999987777777888887532211         


Q ss_pred             ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc---CCCCceEeeeec----eeceeEEEEEECCCCCEEEEe
Q 010390          266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ---LDKGPIQHFSGC----RIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~g  338 (512)
                           ..+...+..+.+.+.|..    .....|++||+.+   ........+...    .....+..++|+|||+.++..
T Consensus       207 -----~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~  277 (740)
T 4a5s_A          207 -----SLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (740)
T ss_dssp             -----TCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             -----CCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence                 012233556666665532    1223789999976   422122233221    134567889999999976654


Q ss_pred             c----CCCCEEEEecCCCC----CC-Ccee--ccccCCeE-----EEEeCCCCCCeEE-EEe-CC--CcEEEEeCCCCcc
Q 010390          339 S----SDGNAYVWQVNKPQ----AD-PIKL--KSHDGEVT-----AVNWCPNEAGKIV-TSS-DD--YTVRLWSLENSRC  398 (512)
Q Consensus       339 ~----~dg~i~iw~~~~~~----~~-~~~~--~~h~~~v~-----~v~~~~~~~~~l~-s~~-~d--g~i~vwd~~~~~~  398 (512)
                      .    .+..|++||+.+++    +. ...+  ..|...|.     .++|+||| +.|+ ..+ .+  ..|++||+.+++.
T Consensus       278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG-~~l~~~~s~~~G~~~l~~~~~~~~~~  356 (740)
T 4a5s_A          278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG-NSFYKIISNEEGYRHICYFQIDKKDC  356 (740)
T ss_dssp             EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS-SEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred             eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC-CEEEEEEEcCCCceEEEEEECCCCce
Confidence            3    33479999998876    21 1222  45665554     78999999 6655 555 33  4688899988776


Q ss_pred             ccc
Q 010390          399 SSM  401 (512)
Q Consensus       399 ~~~  401 (512)
                      .+.
T Consensus       357 ~~l  359 (740)
T 4a5s_A          357 TFI  359 (740)
T ss_dssp             EES
T ss_pred             Eec
Confidence            554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=6.5e-19  Score=181.53  Aligned_cols=299  Identities=10%  Similarity=0.044  Sum_probs=186.1

Q ss_pred             CcceEEEEEecCCCcEEEEeeC---------CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDE---------DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      .+.+++|   ||||++||+++.         ++.|++||+++++...           ...+   ...+..++|||||+.
T Consensus        61 ~~~~~~~---SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~-----------~~~l---~~~~~~~~~SPDG~~  123 (719)
T 1z68_A           61 NASNYGL---SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR-----------GNEL---PRPIQYLCWSPVGSK  123 (719)
T ss_dssp             TCSEEEE---CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-----------SSCC---CSSBCCEEECSSTTC
T ss_pred             ceeeEEE---CCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc-----------ceec---CcccccceECCCCCE
Confidence            4788888   999999999876         7899999998763200           0112   246888999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecc-cCcCCCE-----------------EEEEeeCCCCCeEEEEeCC-C----------
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGAL-MGHTGSI-----------------KSLCSHPTNSDILVSGSRD-G----------  173 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v-----------------~~l~~~~~~~~~l~s~~~d-g----------  173 (512)
                      |+++. ++.|++||+.+++..... .++...|                 .+++|+|++ +.|++++.| +          
T Consensus       124 la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~  201 (719)
T 1z68_A          124 LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYY  201 (719)
T ss_dssp             EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEEC
T ss_pred             EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeecc
Confidence            99885 789999999888765433 2333323                 489999998 788887755 2          


Q ss_pred             -----------------------cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390          174 -----------------------SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK  230 (512)
Q Consensus       174 -----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  230 (512)
                                             .|++||+.+++.....                   .......+..+...+.+++|+|
T Consensus       202 ~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~Sp  262 (719)
T 1z68_A          202 GDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ-------------------EVPVPAMIASSDYYFSWLTWVT  262 (719)
T ss_dssp             CSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE-------------------ECCCCHHHHTSCEEEEEEEESS
T ss_pred             CCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee-------------------EccCCccCCCCcceEEEeEEeC
Confidence                                   5556666543210000                   0000012235677899999999


Q ss_pred             cCCEEEEEeecC---CeEEEEe----ccCccceecccCCCccccccccccccCee-----EEEeCCCCCEEEE--EecCC
Q 010390          231 DEVSIATASAVN---SIVKFWD----TRNLKAQITQAWPHAESSSAKETRLHGIS-----SLSQDSNGVFLTA--SCMDH  296 (512)
Q Consensus       231 ~~~~l~~~g~~d---g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~--~~~dg  296 (512)
                      |++.+++....+   ..|.+||    ..+++......  .     ....+...+.     .+.|+|||+.++.  +..+|
T Consensus       263 D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g  335 (719)
T 1z68_A          263 DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE--H-----IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG  335 (719)
T ss_dssp             SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE--E-----EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred             CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe--c-----ccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence            976555432211   3588899    76665432210  0     0023444455     7899999996554  44555


Q ss_pred             --eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC-----CCCEEEEecCC--CCCCCcee----cccc
Q 010390          297 --RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-----DGNAYVWQVNK--PQADPIKL----KSHD  363 (512)
Q Consensus       297 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----dg~i~iw~~~~--~~~~~~~~----~~h~  363 (512)
                        .|.+||+....   ...+....  ..+..+.++ +++.|+..+.     ++.+++|.+..  +......+    .+|.
T Consensus       336 ~~~l~~~~~~~~~---~~~lt~~~--~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~  409 (719)
T 1z68_A          336 YKHIHYIKDTVEN---AIQITSGK--WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKER  409 (719)
T ss_dssp             CEEEEEESSCSTT---CEECSCSS--SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTT
T ss_pred             ceEEEEEECCCCc---eEecccCc--eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCC
Confidence              56667764432   22333221  123445555 7777665554     47899998764  21111222    2366


Q ss_pred             CCeEEEEeCCCCCCeEEEEeCC--CcEEEEeCCCCccccc
Q 010390          364 GEVTAVNWCPNEAGKIVTSSDD--YTVRLWSLENSRCSSM  401 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~  401 (512)
                      ..+..+.|+|++..++++++.+  ..+.+||+.++++...
T Consensus       410 ~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~  449 (719)
T 1z68_A          410 CQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKI  449 (719)
T ss_dssp             BCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEE
Confidence            7788999999994444455544  5788999988875443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.83  E-value=1.8e-19  Score=167.70  Aligned_cols=238  Identities=9%  Similarity=0.050  Sum_probs=166.6

Q ss_pred             CcceEEEEEecCCCcEE-EEeeCCCcEEEEECCCCCCccccccccccccceeccc-c----CCCcEEEEEEecCCCEEEE
Q 010390           52 PPLAVSFCKTSKNSHIF-AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-A----HQNAIFDLCWIKEDTNILT  125 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~l-atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~----h~~~V~~l~~s~~~~~l~s  125 (512)
                      .+.+++|   +|+|+++ +++..++.|.+||+.+++.             +..+. +    |...+.+++|+|++++|++
T Consensus        35 ~~~~~~~---s~dg~~l~v~~~~~~~v~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~   98 (337)
T 1pby_B           35 TPMVPMV---APGGRIAYATVNKSESLVKIDLVTGET-------------LGRIDLSTPEERVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             CCCCEEE---CTTSSEEEEEETTTTEEEEEETTTCCE-------------EEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred             CccceEE---cCCCCEEEEEeCCCCeEEEEECCCCCe-------------EeeEEcCCcccccccccceEECCCCCEEEE
Confidence            4778888   9999765 5556688999999987643             22221 1    1235678999999999998


Q ss_pred             Ee------------CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          126 AS------------GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       126 ~~------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      ++            .++.|.+||+.+++.+..+.. ...+.+++|+|++ ++|+++  ++.|.+||+.+++.......  
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~~~~--  172 (337)
T 1pby_B           99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVEDKPI--  172 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEEECS--
T ss_pred             EecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeeeeec--
Confidence            86            579999999999988777764 4567889999998 666666  68999999986643211100  


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC-----------------------eEEEEec
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS-----------------------IVKFWDT  250 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg-----------------------~i~iwd~  250 (512)
                                             .....   .+.|+|++..+++++..++                       .|.+||+
T Consensus       173 -----------------------~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          173 -----------------------QSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             -----------------------TTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             -----------------------cccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence                                   00001   1145677666554443333                       4789999


Q ss_pred             cCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC
Q 010390          251 RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP  330 (512)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  330 (512)
                      .+++.. ..         ....+...+.+++|+|++++++++  ++.|.+||+.+.+  .+..+..   ...+..++|+|
T Consensus       227 ~~~~~~-~~---------~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~--~~~~~~~---~~~~~~~~~s~  289 (337)
T 1pby_B          227 ETGEMA-MR---------EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA--SIKRVPL---PHSYYSVNVST  289 (337)
T ss_dssp             TTCCEE-EE---------EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE--EEEEEEC---SSCCCEEEECT
T ss_pred             CCCCce-Ee---------ecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc--CcceecC---CCceeeEEECC
Confidence            887654 11         233344567889999999999988  7999999986532  2222222   12355789999


Q ss_pred             CCCEEEEecCCCCEEEEecCCCCC
Q 010390          331 NASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      ++++|++++.++.|++||+.+++.
T Consensus       290 dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          290 DGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             TSCEEEEESBSSEEEEEETTTCCE
T ss_pred             CCCEEEEEcCCCcEEEEECcCCcE
Confidence            999998888899999999988765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.83  E-value=2.7e-19  Score=170.59  Aligned_cols=282  Identities=9%  Similarity=0.036  Sum_probs=178.1

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCC---CcEEEEECCCCCCccccccccccccceeccccCCCcE-EEEEEecCCCEEEEE
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDED---GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAI-FDLCWIKEDTNILTA  126 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~l~~s~~~~~l~s~  126 (512)
                      ..+.+++|   ||||++||.....   ..|.+||+.+++.              ..+..+...+ ..+.|+|||++|+.+
T Consensus        36 ~~~~~~~~---SpdG~~l~~~~~~~g~~~l~~~d~~~~~~--------------~~l~~~~~~~~~~~~~spdg~~l~~~   98 (396)
T 3c5m_A           36 NYFYQKCF---TQDGKKLLFAGDFDGNRNYYLLNLETQQA--------------VQLTEGKGDNTFGGFISTDERAFFYV   98 (396)
T ss_dssp             CCTTSCCB---CTTSCEEEEEECTTSSCEEEEEETTTTEE--------------EECCCSSCBCTTTCEECTTSSEEEEE
T ss_pred             eeeecCcC---CCCCCEEEEEEecCCCceEEEEECCCCcE--------------EEeecCCCCccccceECCCCCEEEEE
Confidence            33777888   9999998877543   3688889876532              2222233332 337899999999999


Q ss_pred             eCCCcEEEEeCCCCeeeecccCcCCCEEE-------------------EEeeCCCCCeEEEE-----eCCCcEEEEeCCC
Q 010390          127 SGDQTIKIWDAEKKKCTGALMGHTGSIKS-------------------LCSHPTNSDILVSG-----SRDGSFAIWDLRC  182 (512)
Q Consensus       127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-------------------l~~~~~~~~~l~s~-----~~dg~i~vwd~~~  182 (512)
                      +.++.|++||+.+++.......+......                   +.|+|++ ..++.+     ..+..|.+||+.+
T Consensus        99 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~  177 (396)
T 3c5m_A           99 KNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIET  177 (396)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTT
T ss_pred             EcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCC
Confidence            99999999999988765555444432222                   2456665 443332     3456788888875


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee-cCCEEEEEeecC-----CeEEEEeccCccce
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVN-----SIVKFWDTRNLKAQ  256 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~d-----g~i~iwd~~~~~~~  256 (512)
                      ++..                            ....+...+..+.|+| ++..++.+....     ..|.+||+......
T Consensus       178 g~~~----------------------------~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~  229 (396)
T 3c5m_A          178 GELE----------------------------VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR  229 (396)
T ss_dssp             CCEE----------------------------EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE
T ss_pred             CcEE----------------------------eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee
Confidence            4321                            1113345688999999 788777654221     36888888765432


Q ss_pred             ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-
Q 010390          257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-  330 (512)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-  330 (512)
                      ...          .......+..+.|+|+|++|+.++.+     +.|++||+.+.....+....+      .. +.|+| 
T Consensus       230 ~l~----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~------~~-~~~s~~  292 (396)
T 3c5m_A          230 KIK----------EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP------CS-HLMSNF  292 (396)
T ss_dssp             ESS----------CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS------EE-EEEECS
T ss_pred             Eee----------ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC------CC-CCccCC
Confidence            211          10012347789999999987776544     459999986543222221111      12 78999 


Q ss_pred             CCCEEEEec----------------CCCCEEEEecCCCCCCCceeccccC-----------CeEEEEeCCCCCCeEEEEe
Q 010390          331 NASHILSGS----------------SDGNAYVWQVNKPQADPIKLKSHDG-----------EVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       331 ~~~~l~~g~----------------~dg~i~iw~~~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~~~l~s~~  383 (512)
                      +|+++++++                .+..|++||+.+++.  ..+..+..           .+..++|+|++ ..|+.++
T Consensus       293 dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~s  369 (396)
T 3c5m_A          293 DGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPND-DGVLFTS  369 (396)
T ss_dssp             SSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTS-SEEEEEE
T ss_pred             CCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCC-CeEEEEe
Confidence            999888754                346799999987654  34444443           25678999999 6666655


Q ss_pred             -CCCcEEEE--eCCCCcc
Q 010390          384 -DDYTVRLW--SLENSRC  398 (512)
Q Consensus       384 -~dg~i~vw--d~~~~~~  398 (512)
                       .++...+|  ++.+++.
T Consensus       370 ~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          370 DFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             CTTSSCEEEEEECCTTCC
T ss_pred             cCCCCceEEEEEEccccc
Confidence             45555555  5555543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=1.4e-18  Score=162.66  Aligned_cols=284  Identities=10%  Similarity=0.016  Sum_probs=180.5

Q ss_pred             CCCcEEEEee------CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC--------
Q 010390           63 KNSHIFAVSD------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG--------  128 (512)
Q Consensus        63 ~~~~~latg~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~--------  128 (512)
                      ++++++++..      .|+.|.+||..+++.             +..+..+..+  .++|+||+++|+++..        
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~-------------~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g   77 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKF-------------LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRG   77 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCE-------------EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSS
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeE-------------EEEecCCCCC--ceEECCCCCEEEEEEecccccccC
Confidence            4666666653      367999999877643             3444455444  8999999999998763        


Q ss_pred             --CCcEEEEeCCCCeeeecccCc------CCCEEEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCCccccceeeec
Q 010390          129 --DQTIKIWDAEKKKCTGALMGH------TGSIKSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       129 --dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                        ++.|.+||..+++.+..+...      ......++++|++ ++|+++..  ++.|.+||+.+.+.....         
T Consensus        78 ~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~~---------  147 (361)
T 2oiz_A           78 KRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVEDV---------  147 (361)
T ss_dssp             CEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEEE---------
T ss_pred             CCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEEE---------
Confidence              678999999998887776532      2356678999998 67776653  689999999865432110         


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCccccccccccccCe
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                       .. . .....+.+.|++...+++.+.||.+.+|+... ++.........     .......+ 
T Consensus       148 -----------------i~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~-----~~~~~~~~-  202 (361)
T 2oiz_A          148 -----------------TA-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ-----MFSVKDDP-  202 (361)
T ss_dssp             -----------------GG-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC-----CSCTTTSC-
T ss_pred             -----------------ec-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc-----eEcCCCCc-
Confidence                             00 0 11222556676644444455788898888765 33221100000     01111111 


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece-----e---ceeEEEEEECCCCCEEEEecC---------
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-----I---ESFYVKSEICPNASHILSGSS---------  340 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~---~~~~~~~~~s~~~~~l~~g~~---------  340 (512)
                      ..+.+++++..++..+.++.|.++|+..........+.-..     .   ......++++|+++.++++..         
T Consensus       203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~  282 (361)
T 2oiz_A          203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHK  282 (361)
T ss_dssp             BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTT
T ss_pred             eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccccc
Confidence            12334566777777778999999998643222111111000     0   000112688999888766532         


Q ss_pred             --CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC--ccccc
Q 010390          341 --DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS--RCSSM  401 (512)
Q Consensus       341 --dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~  401 (512)
                        .+.|.+||+.+.+. +..+..+.  +.+++|+|++ ++|++++. +.|.+||..++  +.+..
T Consensus       283 ~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~t~~l~~~~~  342 (361)
T 2oiz_A          283 FPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVYDISQPEPKLLRT  342 (361)
T ss_dssp             CCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTT-TEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred             CCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCC-CEEEEeCC-CeEEEEECCCCcceeeEE
Confidence              34799999998775 45566555  9999999999 78888876 99999999999  66554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=5.2e-18  Score=161.28  Aligned_cols=255  Identities=9%  Similarity=0.046  Sum_probs=167.9

Q ss_pred             eeccccCCCcEEE-----EEEecCCCEEEEEeC-CC--cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC
Q 010390          101 ISDWVAHQNAIFD-----LCWIKEDTNILTASG-DQ--TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD  172 (512)
Q Consensus       101 ~~~~~~h~~~V~~-----l~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  172 (512)
                      +..+..|......     .+|+|||++|+.++. ++  .|.+||+.+++......++...+..+.|+|++ ..|+.++.+
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~  101 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD-DALFYVKDG  101 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS-SEEEEEETT
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC-CEEEEEeCC
Confidence            5566667766666     889999999998887 66  48889999998887777776666677899998 889999988


Q ss_pred             CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEE--EEeecCCEEEEEe-----------
Q 010390          173 GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSV--LYLKDEVSIATAS-----------  239 (512)
Q Consensus       173 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~g-----------  239 (512)
                      +.|++||+.+++....                           ...+...+...  .+++++..++...           
T Consensus       102 ~~l~~~d~~~g~~~~~---------------------------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A          102 RNLMRVDLATLEENVV---------------------------YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             TEEEEEETTTCCEEEE---------------------------EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             CeEEEEECCCCcceee---------------------------eechhhcccccceeECCCCCeeccccccCcccccccc
Confidence            9999999987643211                           11112223223  3478888776421           


Q ss_pred             ----------ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecC------CeEEEEE
Q 010390          240 ----------AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMD------HRIYLYN  302 (512)
Q Consensus       240 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d  302 (512)
                                ..+..|.+||+.+++...            ...+...+..+.|+| +|+.|+....+      ..|.++|
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~------------l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d  222 (388)
T 3pe7_A          155 WKKFHEFYFTKPCCRLMRVDLKTGESTV------------ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLIN  222 (388)
T ss_dssp             HHHHHHHGGGCCCEEEEEEETTTCCEEE------------EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEE
T ss_pred             cchhhhhhccCCcceEEEEECCCCceEE------------eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEe
Confidence                      134689999998875432            333445688999999 99988877653      3788888


Q ss_pred             cccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC-CC----CEEEEecCCCCCCC-ceeccccCC---eEEEEeCC
Q 010390          303 VLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-DG----NAYVWQVNKPQADP-IKLKSHDGE---VTAVNWCP  373 (512)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg----~i~iw~~~~~~~~~-~~~~~h~~~---v~~v~~~~  373 (512)
                      .....   ...+........+...+|+|||+.|+..+. ++    .|++||+.+++... ..+.++...   ...++|+|
T Consensus       223 ~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp  299 (388)
T 3pe7_A          223 EDGTN---MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG  299 (388)
T ss_dssp             TTSCC---CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE
T ss_pred             CCCCc---eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc
Confidence            65432   222222221124566899999998765433 22    39999998876421 122221100   11236999


Q ss_pred             CCCCeEEEE---------eCCCcEEEEeCCCCccc
Q 010390          374 NEAGKIVTS---------SDDYTVRLWSLENSRCS  399 (512)
Q Consensus       374 ~~~~~l~s~---------~~dg~i~vwd~~~~~~~  399 (512)
                      || +.|+..         ..+..|++||+.+++..
T Consensus       300 dg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (388)
T 3pe7_A          300 DG-SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH  333 (388)
T ss_dssp             EE-CCC------------CCCCEEEEEETTTTEEE
T ss_pred             CC-CcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence            99 555532         55679999999987653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=1.2e-18  Score=163.92  Aligned_cols=254  Identities=9%  Similarity=-0.026  Sum_probs=164.2

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECC-CCCCccccccccccccceeccccCCCcEEEEEEecCCCE--EEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR-RKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN--ILT  125 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~--l~s  125 (512)
                      ....+..+++   +|||++|++++.+ .|.+|++. ++..           ..+.....+ +.+..++|+|+|++  +++
T Consensus        38 ~~~~~~~~a~---spdg~~l~~~~~~-~v~~~~~~~~g~~-----------~~~~~~~~~-g~~~~~~~spdg~~l~~~~  101 (365)
T 1jof_A           38 QDEPISWMTF---DHERKNIYGAAMK-KWSSFAVKSPTEI-----------VHEASHPIG-GHPRANDADTNTRAIFLLA  101 (365)
T ss_dssp             TTCCCSEEEE---CTTSSEEEEEEBT-EEEEEEEEETTEE-----------EEEEEEECC-SSGGGGCTTSCCEEEEEEE
T ss_pred             CCCCCcEEEE---CCCCCEEEEEccc-eEEEEEECCCCCE-----------EEeeEeecC-CCCccEEECCCCCEEEEEE
Confidence            3345677777   9999999998887 99999986 4421           001111111 22445889999994  445


Q ss_pred             Ee-------------CCCcEEEEeCC-CCeeeeccc----CcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCC-CCCC
Q 010390          126 AS-------------GDQTIKIWDAE-KKKCTGALM----GHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLR-CKSS  185 (512)
Q Consensus       126 ~~-------------~dg~i~iwd~~-~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~  185 (512)
                      +.             .+|.+.+|++. +++....+.    .+...+.+++|+|++ ++|+++. .++.|++||+. +++.
T Consensus       102 ~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~  180 (365)
T 1jof_A          102 AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEV  180 (365)
T ss_dssp             CSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCE
T ss_pred             ecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCE
Confidence            53             68999999997 465543333    245679999999998 6666655 46799999997 4331


Q ss_pred             CCCccccceeeecccccccccccccccceecc--cccccEEEEEEeecCCEEEEEeecCCeEEEEecc--Ccccee---c
Q 010390          186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK--AASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NLKAQI---T  258 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~~~~~---~  258 (512)
                      ..                         .....  .+...+..++|+|+++.+++++..++.|.+|+++  +++...   .
T Consensus       181 ~~-------------------------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~  235 (365)
T 1jof_A          181 EL-------------------------VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS  235 (365)
T ss_dssp             EE-------------------------EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EE-------------------------eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence            10                         00111  1245688999999999998877667899999875  333211   0


Q ss_pred             c-cCCCcccccccccccc------CeeEEE-eCCCCCEEEEEecCC------eEEEEEcccCCCCceEe---eeeceece
Q 010390          259 Q-AWPHAESSSAKETRLH------GISSLS-QDSNGVFLTASCMDH------RIYLYNVLQLDKGPIQH---FSGCRIES  321 (512)
Q Consensus       259 ~-~~~~~~~~~~~~~~~~------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~---~~~~~~~~  321 (512)
                      . ..+.     ...++..      .+..++ |+|||++|+++..+.      .|.+|++.. .......   ....  ..
T Consensus       236 ~~~~~~-----~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~~~--~~  307 (365)
T 1jof_A          236 FPLIPP-----GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPTP--TS  307 (365)
T ss_dssp             EESSCT-----TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEECS--SC
T ss_pred             EEcCCC-----CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CCCEEEeeeeeecC--CC
Confidence            0 0000     0111121      478899 999999988776432      899999863 1222111   1111  11


Q ss_pred             eEEEEEECC---CCCEEEEecCC-CCEEEEecCCC
Q 010390          322 FYVKSEICP---NASHILSGSSD-GNAYVWQVNKP  352 (512)
Q Consensus       322 ~~~~~~~s~---~~~~l~~g~~d-g~i~iw~~~~~  352 (512)
                      ....++|+|   +|++|++++.+ +.|.+|+++..
T Consensus       308 ~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          308 GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            233478899   89999888764 89999998764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=1.6e-17  Score=169.56  Aligned_cols=293  Identities=10%  Similarity=-0.036  Sum_probs=192.0

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEe--eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEE---------E
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVS--DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIF---------D  113 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~---------~  113 (512)
                      .+.+|...+..+++   ++++-+++..  +.++...||....+.             ....+..|...+.         .
T Consensus        18 ~~~~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~~~   81 (662)
T 3azo_A           18 LVASRSGRPACVGA---VGDEVWWVAPRPAEAGRATLVRRRADG-------------AEESALPAPWNVRNRVFEYSGFP   81 (662)
T ss_dssp             HHHHTCSCCEEEEE---ETTEEEEEEEETTTTTEEEEEEECTTS-------------CEEESSCTTCCBCCCGGGTCCCC
T ss_pred             HHhhcCCccceeEE---cCCeEEEEecCcccCCcEEEEEECCCC-------------CcceeCCCCccccccccccCCcc
Confidence            45678889999998   8877777777  668899999863321             1344555555555         5


Q ss_pred             EEEe--cCCCE-EEEEeC-CCcEEEEeCC--C-CeeeecccC-----cCCCEEEEEeeCCCCCeEEEEeCC---------
Q 010390          114 LCWI--KEDTN-ILTASG-DQTIKIWDAE--K-KKCTGALMG-----HTGSIKSLCSHPTNSDILVSGSRD---------  172 (512)
Q Consensus       114 l~~s--~~~~~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~~~d---------  172 (512)
                      ..|+  |||+. |+.++. +..|.+|++.  . ++ ...+..     |...+.+++|+|++ +.|+.++.|         
T Consensus        82 ~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           82 WAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             EEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCE
T ss_pred             ceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCc
Confidence            6666  99998 775543 5667777775  3 43 344444     56778999999998 788877766         


Q ss_pred             -CcEEEEeCCC------CCCCCCccccceeeecccccccccccccccceecc-cccccEEEEEEeecCCEEEEEeecC--
Q 010390          173 -GSFAIWDLRC------KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK-AASMSITSVLYLKDEVSIATASAVN--  242 (512)
Q Consensus       173 -g~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~g~~d--  242 (512)
                       ..|++||+.+      +..                            ..+. .+...+..++|+|||+.+++++...  
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~----------------------------~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~  211 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAV----------------------------RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR  211 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGS----------------------------EESSCSCSSEECCCEECTTSSEEEEEEECTTC
T ss_pred             eeEEEEEECCCCccccCCce----------------------------eEEEecCCCcccCceECCCCCEEEEEECCCCC
Confidence             5899999876      221                            1122 2345677889999999998766432  


Q ss_pred             -----CeEEEEecc-Ccc--ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC--eEEEEEcccCCCCceE
Q 010390          243 -----SIVKFWDTR-NLK--AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH--RIYLYNVLQLDKGPIQ  312 (512)
Q Consensus       243 -----g~i~iwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~  312 (512)
                           ..|++||+. ++.  ....          ....+...+..+.|+|||++++++..++  .|.+||+...+   ..
T Consensus       212 ~~~~~~~i~~~d~~~~g~~~~~~~----------l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~---~~  278 (662)
T 3azo_A          212 MPWEGTELKTARVTEDGRFADTRT----------LLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA---AT  278 (662)
T ss_dssp             CTTTCEEEEEEEECTTSCEEEEEE----------EEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC---EE
T ss_pred             CCCCCcEEEEEEECCCCcccccEE----------eCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc---ee
Confidence                 479999998 451  1111          1223356789999999999888888888  56666653322   11


Q ss_pred             eeeeceece-------eEEEEEECCCCCEEEEecCCCCEEEEecC--CCCCCCceeccccCCeEEE-EeCCCCCCeEEEE
Q 010390          313 HFSGCRIES-------FYVKSEICPNASHILSGSSDGNAYVWQVN--KPQADPIKLKSHDGEVTAV-NWCPNEAGKIVTS  382 (512)
Q Consensus       313 ~~~~~~~~~-------~~~~~~~s~~~~~l~~g~~dg~i~iw~~~--~~~~~~~~~~~h~~~v~~v-~~~~~~~~~l~s~  382 (512)
                      .+.......       .+..++|+++++++++++. +.++||.++  +++  ...+..|...+..+ +++.+. .+++++
T Consensus       279 ~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~s~~~~~-~~~~~~  354 (662)
T 3azo_A          279 QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE--LVDAAGPWTEWAATLTVSGTR-AVGVAA  354 (662)
T ss_dssp             ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE--EEECCSSCCEEEEEEEEETTE-EEEEEE
T ss_pred             ecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc--EEEecCCCCeEEEEEecCCCE-EEEEEc
Confidence            211111000       0335789999999999998 999999544  333  35666777778877 554433 344445


Q ss_pred             eCCC--cEEEEeCCCCcccc
Q 010390          383 SDDY--TVRLWSLENSRCSS  400 (512)
Q Consensus       383 ~~dg--~i~vwd~~~~~~~~  400 (512)
                      +.+.  .|.+||+.+++...
T Consensus       355 ~~~~~~~i~~~d~~~g~~~~  374 (662)
T 3azo_A          355 SPRTAYEVVELDTVTGRART  374 (662)
T ss_dssp             ETTEEEEEEEEETTTCCEEE
T ss_pred             CCCCCCEEEEEECCCCceEE
Confidence            5554  56666777776544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=4.7e-18  Score=158.96  Aligned_cols=241  Identities=9%  Similarity=-0.012  Sum_probs=154.8

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          113 DLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       113 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      .+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++..+++++..++.|.+||+.+++.......
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            34677788899999999999999999999887776443 25778999999844556666789999999986543211100


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec-----------CCeEEEEeccCccceeccc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-----------NSIVKFWDTRNLKAQITQA  260 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-----------dg~i~iwd~~~~~~~~~~~  260 (512)
                      .         .            ........+..++|+|+++.+++++..           ++.|.+||+.+++..... 
T Consensus        84 ~---------~------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-  141 (349)
T 1jmx_B           84 S---------S------------VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV-  141 (349)
T ss_dssp             C---------C------------STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-
T ss_pred             c---------c------------ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-
Confidence            0         0            000002347789999999999987643           489999999875433211 


Q ss_pred             CCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece----------------------
Q 010390          261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR----------------------  318 (512)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------------  318 (512)
                              ....+...+.+++|+|+|+ +++++  +.|.+||+.+.+.  ...+....                      
T Consensus       142 --------~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (349)
T 1jmx_B          142 --------RTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY--TVALPLRNWNRKGYSAPDVLYFWPHQSPRH  208 (349)
T ss_dssp             --------EEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE--EEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred             --------eeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce--eccccccccCCccccCccceeeecCCCcce
Confidence                    1112223588999999999 66653  3499999865432  22222110                      


Q ss_pred             eceeEEEEEECCCCCE-----------EEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCC-CCCCeEEEEeCCC
Q 010390          319 IESFYVKSEICPNASH-----------ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP-NEAGKIVTSSDDY  386 (512)
Q Consensus       319 ~~~~~~~~~~s~~~~~-----------l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~l~s~~~dg  386 (512)
                      .......+++++++..           +.....++.+++|++          ..+...+.+++|+| ++ ++++++  ++
T Consensus       209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sp~dg-~~l~~~--~~  275 (349)
T 1jmx_B          209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF----------ADLTELYFTGLRSPKDP-NQIYGV--LN  275 (349)
T ss_dssp             EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE----------EECSSCEEEEEECSSCT-TEEEEE--ES
T ss_pred             eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc----------ccCCCcceeeEecCCCC-CEEEEE--cC
Confidence            0002334566655421           122333444544444          23556788999999 98 777777  88


Q ss_pred             cEEEEeCCCCccccc
Q 010390          387 TVRLWSLENSRCSSM  401 (512)
Q Consensus       387 ~i~vwd~~~~~~~~~  401 (512)
                      .|.+||+.+++.+..
T Consensus       276 ~v~~~d~~~~~~~~~  290 (349)
T 1jmx_B          276 RLAKYDLKQRKLIKA  290 (349)
T ss_dssp             EEEEEETTTTEEEEE
T ss_pred             eEEEEECccCeEEEE
Confidence            999999998876543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=1.3e-16  Score=164.34  Aligned_cols=325  Identities=9%  Similarity=0.032  Sum_probs=183.8

Q ss_pred             eecCCccCCcceEEE--EEecCCCcEEEEeeCC---------CcEEEEECCCCCCccccccccccccceeccccCCCcEE
Q 010390           44 VEHHGEETPPLAVSF--CKTSKNSHIFAVSDED---------GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIF  112 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~--~~~s~~~~~latg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  112 (512)
                      ..+.+|......+++  ..|||||++||.++.+         +.+.+||+.+++              ...+..|.+.+.
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~--------------~~~l~~~~~~~~  115 (740)
T 4a5s_A           50 VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ--------------LITEERIPNNTQ  115 (740)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE--------------ECCSSCCCTTEE
T ss_pred             EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc--------------EEEcccCCCcce
Confidence            345566544444333  3449999999998875         667799998763              334567788999


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec-ccCcCCCE-----------------EEEEeeCCCCCeEEEEeCC-C
Q 010390          113 DLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA-LMGHTGSI-----------------KSLCSHPTNSDILVSGSRD-G  173 (512)
Q Consensus       113 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~h~~~v-----------------~~l~~~~~~~~~l~s~~~d-g  173 (512)
                      ..+|||||+.||.+. |+.|++|++.+++..+. ..++...+                 .++.|+|++ +.|+.++.| +
T Consensus       116 ~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~  193 (740)
T 4a5s_A          116 WVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDT  193 (740)
T ss_dssp             EEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECT
T ss_pred             eeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEccc
Confidence            999999999999884 68899999988875542 22333323                 348899999 777776654 4


Q ss_pred             cEEEEeCCCCCCCCCccccceeeeccccccc--------c--cccc---cc--cceecc------cccccEEEEEEeecC
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGA--------H--LLSQ---SK--RVSRRK------AASMSITSVLYLKDE  232 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~---~~--~~~~~~------~~~~~v~~~~~~~~~  232 (512)
                      .+.+|++..........  ...........+        .  ....   ..  ....+.      .+...+..++|+||+
T Consensus       194 ~v~~~~~~~~~~~~~~~--~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg  271 (740)
T 4a5s_A          194 EVPLIEYSFYSDESLQY--PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE  271 (740)
T ss_dssp             TCCEEEEEECCSTTCSS--CEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred             CCceEEEEeecCCCCCC--CcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC
Confidence            47777653222110000  000000000000        0  0000   00  111111      367789999999999


Q ss_pred             CEEEEEeec---CCeEEEEeccCcc----ceecccCCCccccccccccccCee-----EEEeCCCCCEEE-EEe-cC--C
Q 010390          233 VSIATASAV---NSIVKFWDTRNLK----AQITQAWPHAESSSAKETRLHGIS-----SLSQDSNGVFLT-ASC-MD--H  296 (512)
Q Consensus       233 ~~l~~~g~~---dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~-~~~-~d--g  296 (512)
                      +.++.....   +..|.+||+.+++    +......       ....+...+.     ...|+|||+.++ ..+ .+  .
T Consensus       272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l-------~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~  344 (740)
T 4a5s_A          272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH-------IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYR  344 (740)
T ss_dssp             EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE-------EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCE
T ss_pred             eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe-------eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCce
Confidence            976654322   2479999999876    2211100       0122333333     688999999876 554 34  4


Q ss_pred             eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecC----CCCEEEEecC--CCCCCCceec----cccCC
Q 010390          297 RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSS----DGNAYVWQVN--KPQADPIKLK----SHDGE  365 (512)
Q Consensus       297 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~----dg~i~iw~~~--~~~~~~~~~~----~h~~~  365 (512)
                      .|++||+.....   ..+....  -.+..+. .++++.| +++..    .+..+||.+.  ..... ..+.    +....
T Consensus       345 ~l~~~~~~~~~~---~~lT~g~--~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~-~~lt~~~~~~~~~  417 (740)
T 4a5s_A          345 HICYFQIDKKDC---TFITKGT--WEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKV-TCLSCELNPERCQ  417 (740)
T ss_dssp             EEEEEETTCSSC---EESCCSS--SCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEE-EESSTTTSTTTBC
T ss_pred             EEEEEECCCCce---EecccCC--EEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcc-eeeccccCCCCCc
Confidence            688888754322   2222221  1122222 1335555 44443    2445555543  32211 1121    23457


Q ss_pred             eEEEEeCCCCCCeEE-EEeCC--CcEEEEeCCCCccccc
Q 010390          366 VTAVNWCPNEAGKIV-TSSDD--YTVRLWSLENSRCSSM  401 (512)
Q Consensus       366 v~~v~~~~~~~~~l~-s~~~d--g~i~vwd~~~~~~~~~  401 (512)
                      +..+.|+|++ .+++ +.+..  ..+.+++..+++....
T Consensus       418 ~~~~~~S~dg-~~~~~~~s~~~~p~~~l~~~~~~~~~~~  455 (740)
T 4a5s_A          418 YYSVSFSKEA-KYYQLRCSGPGLPLYTLHSSVNDKGLRV  455 (740)
T ss_dssp             BEEEEECTTS-SEEEEEECSBSSCEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCC-CEEEEEeCCCCCCEEEEEECCCCcEEEE
Confidence            8899999999 5544 44332  4688888887765443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.77  E-value=3.8e-16  Score=141.62  Aligned_cols=245  Identities=11%  Similarity=0.120  Sum_probs=168.0

Q ss_pred             cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc------CcCCCEEEEEee-CCCCCeEEEEeC-CCcEEE
Q 010390          106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM------GHTGSIKSLCSH-PTNSDILVSGSR-DGSFAI  177 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~-~~~~~~l~s~~~-dg~i~v  177 (512)
                      ++-..+.++++++++.++++...++.|.+||.. ++.+..+.      ++...+.++++. +++ .++++... ++.|.+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEE
Confidence            556789999999999988888889999999987 55555443      244578999995 544 66666543 789999


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI  257 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~  257 (512)
                      ||.. ++.....                          ...+...+.++++++++..+++ ...++.|.+||... +...
T Consensus       105 ~d~~-g~~~~~~--------------------------~~~~~~~~~~i~~~~~g~l~v~-~~~~~~i~~~~~~g-~~~~  155 (286)
T 1q7f_A          105 YNQY-GQFVRKF--------------------------GATILQHPRGVTVDNKGRIIVV-ECKVMRVIIFDQNG-NVLH  155 (286)
T ss_dssp             ECTT-SCEEEEE--------------------------CTTTCSCEEEEEECTTSCEEEE-ETTTTEEEEECTTS-CEEE
T ss_pred             ECCC-CcEEEEe--------------------------cCccCCCceEEEEeCCCCEEEE-ECCCCEEEEEcCCC-CEEE
Confidence            9943 3211100                          0012346789999999975554 54678999999653 2222


Q ss_pred             cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  337 (512)
                      ..         ....+...+..++++++|+++++...++.|++||...   ..+..+...........++++++|+++++
T Consensus       156 ~~---------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g---~~~~~~~~~g~~~~p~~i~~d~~G~l~v~  223 (286)
T 1q7f_A          156 KF---------GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNGEILIA  223 (286)
T ss_dssp             EE---------ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTCCEEEE
T ss_pred             Ee---------CCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC---CEEEEEccCCccCCCcEEEECCCCCEEEE
Confidence            11         0112334588999999999887777899999999632   23333332211234677999999998888


Q ss_pred             ecCCC-CEEEEecCCCCCCCceeccc--cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          338 GSSDG-NAYVWQVNKPQADPIKLKSH--DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       338 g~~dg-~i~iw~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ...++ .|.+|+... +. ...+..+  ...+.+++++|++ +++++ +.|+.|++|++....
T Consensus       224 ~~~~~~~i~~~~~~g-~~-~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          224 DNHNNFNLTIFTQDG-QL-ISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             ECSSSCEEEEECTTS-CE-EEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSCCC
T ss_pred             eCCCCEEEEEECCCC-CE-EEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEEEccccc
Confidence            87775 999999643 22 2334333  2347899999998 67776 679999999986543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=1.4e-15  Score=137.81  Aligned_cols=251  Identities=12%  Similarity=0.117  Sum_probs=168.8

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe-cCCCEEEEE
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI-KEDTNILTA  126 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~s~  126 (512)
                      ||-..+.+|++   +++|+++++...++.|.+||.+.... ...       .......+|...+.++++. +++..+++.
T Consensus        27 g~~~~p~~v~~---~~~g~l~v~~~~~~~i~~~d~~g~~~-~~~-------~~~~~~~~~~~~p~~i~~~~~~g~l~v~~   95 (286)
T 1q7f_A           27 GQFTEPSGVAV---NAQNDIIVADTNNHRIQIFDKEGRFK-FQF-------GECGKRDSQLLYPNRVAVVRNSGDIIVTE   95 (286)
T ss_dssp             TCBSCEEEEEE---CTTCCEEEEEGGGTEEEEECTTSCEE-EEE-------CCBSSSTTCBSSEEEEEEETTTTEEEEEE
T ss_pred             CccCCCceEEE---CCCCCEEEEECCCCEEEEECCCCcEE-EEe-------cccCCCcccccCceEEEEEcCCCeEEEEc
Confidence            45566778887   99999888888899999999763311 000       0000012455678999995 566666655


Q ss_pred             eC-CCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          127 SG-DQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       127 ~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      .. ++.|.+|| .+++.+..+. .+...+.++++.+++ +++++...++.|.+||.... .....               
T Consensus        96 ~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~~~~---------------  157 (286)
T 1q7f_A           96 RSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VLHKF---------------  157 (286)
T ss_dssp             CGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSC-EEEEE---------------
T ss_pred             CCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCCC-EEEEe---------------
Confidence            33 88999999 5666666553 344578999999988 78888778899999996421 11000               


Q ss_pred             ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS  284 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (512)
                                ....+...+..+++++++..++ +...++.|.+||.... ......         ...+...+..+++++
T Consensus       158 ----------~~~~~~~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~~g~-~~~~~~---------~~g~~~~p~~i~~d~  216 (286)
T 1q7f_A          158 ----------GCSKHLEFPNGVVVNDKQEIFI-SDNRAHCVKVFNYEGQ-YLRQIG---------GEGITNYPIGVGINS  216 (286)
T ss_dssp             ----------ECTTTCSSEEEEEECSSSEEEE-EEGGGTEEEEEETTCC-EEEEES---------CTTTSCSEEEEEECT
T ss_pred             ----------CCCCccCCcEEEEECCCCCEEE-EECCCCEEEEEcCCCC-EEEEEc---------cCCccCCCcEEEECC
Confidence                      0012234688999999988544 4556899999997543 222111         111224578999999


Q ss_pred             CCCEEEEEecCC-eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390          285 NGVFLTASCMDH-RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       285 ~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~  352 (512)
                      +|+++++...++ .|.+||..   ...+..+........+..++++|+|+++++ +.++.|++|++...
T Consensus       217 ~G~l~v~~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          217 NGEILIADNHNNFNLTIFTQD---GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             TCCEEEEECSSSCEEEEECTT---SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCEEEEeCCCCEEEEEECCC---CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            999888887776 99999953   233444444332334667999999987777 56899999998653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=7.2e-16  Score=142.62  Aligned_cols=263  Identities=11%  Similarity=0.021  Sum_probs=176.7

Q ss_pred             CCcEEEEEEecCCCEEEEEeCC------------------------CcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCC
Q 010390          108 QNAIFDLCWIKEDTNILTASGD------------------------QTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTN  162 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~  162 (512)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++.+..+. ++-.....+++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4789999999999999888777                        479999999888776554 344578999999988


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCC-CCCCccccceeeecccccccccccccccceecccccccEEEEEEee-cCCEEEEEee
Q 010390          163 SDILVSGSRDGSFAIWDLRCKS-SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASA  240 (512)
Q Consensus       163 ~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~  240 (512)
                       +++++...++.|++||..... ........                  ........+......++++| ++..+++ .+
T Consensus       103 -~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~------------------~~~g~~~~~~~~P~~ia~~~~~g~lyv~-d~  162 (329)
T 3fvz_A          103 -NYWVTDVALHQVFKLDPHSKEGPLLILGRS------------------MQPGSDQNHFCQPTDVAVEPSTGAVFVS-DG  162 (329)
T ss_dssp             -CEEEEETTTTEEEEECTTCSSCCSEEESBT------------------TBCCCSTTCCSSEEEEEECTTTCCEEEE-EC
T ss_pred             -CEEEEECCCCEEEEEeCCCCeEEEEEeccc------------------CCCCCCccccCCCcEEEEeCCCCeEEEE-eC
Confidence             788888888999999986432 11100000                  00000012344688999999 5555554 53


Q ss_pred             -cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeece
Q 010390          241 -VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR  318 (512)
Q Consensus       241 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  318 (512)
                       .++.|++||.. +............. .....+......++++++ +.++++...++.|++||..++  ..+..+....
T Consensus       163 ~~~~~I~~~~~~-g~~~~~~~~~g~~~-~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G--~~~~~~~~~~  238 (329)
T 3fvz_A          163 YCNSRIVQFSPS-GKFVTQWGEESSGS-SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK--EFVREIKHAS  238 (329)
T ss_dssp             SSCCEEEEECTT-SCEEEEECEECCSS-SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEECCTT
T ss_pred             CCCCeEEEEcCC-CCEEEEeccCCCCC-CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC--cEEEEEeccc
Confidence             58999999943 44333221100000 000123345789999998 777777778899999998632  3334443222


Q ss_pred             eceeEEEEEECC------CCCEEEEecCCCCEEEEecCCCCCCCcee---ccccCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390          319 IESFYVKSEICP------NASHILSGSSDGNAYVWQVNKPQADPIKL---KSHDGEVTAVNWCPNEAGKIVTSSDDYTVR  389 (512)
Q Consensus       319 ~~~~~~~~~~s~------~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~  389 (512)
                      ....+..++++|      +++..++...+..|++|+..+++.. ..+   .++...+.+|+++|+| .++++...++.|+
T Consensus       239 ~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~  316 (329)
T 3fvz_A          239 FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-DVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVW  316 (329)
T ss_dssp             TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE-EEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEE
T ss_pred             cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-EEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEE
Confidence            233455678888      4444444445568999999887652 344   3566789999999999 8999999999999


Q ss_pred             EEeCCCC
Q 010390          390 LWSLENS  396 (512)
Q Consensus       390 vwd~~~~  396 (512)
                      +|++...
T Consensus       317 ~~~~~~~  323 (329)
T 3fvz_A          317 KFTLTEK  323 (329)
T ss_dssp             EEEEEEC
T ss_pred             EEeCCcc
Confidence            9998653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=7.4e-16  Score=143.05  Aligned_cols=274  Identities=10%  Similarity=0.008  Sum_probs=183.4

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      ..|.++.|   ++++..++....++.++.|.-                .....+..+...+.+++|++++++++++..++
T Consensus         6 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~   66 (333)
T 2dg1_A            6 QDLPTLFY---SGKSNSAVPIISESELQTITA----------------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEG   66 (333)
T ss_dssp             CCCCBCCS---CGGGGCSSCCCCGGGSCEEEC----------------EEEEEEESSCCCEEEEEECTTSCEEEEETTTC
T ss_pred             cccceeee---cCCccceeEEeecccCccccc----------------ceeEEEeccCccccCcEECCCCCEEEEECCCC
Confidence            34677777   888888887788889999932                11444556777889999999999878888899


Q ss_pred             cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      .|.+||..+++.......+...+.++++++++ +++++...+    +.|.+||..++......                 
T Consensus        67 ~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-----------------  128 (333)
T 2dg1_A           67 NIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDII-----------------  128 (333)
T ss_dssp             EEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEE-----------------
T ss_pred             EEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEE-----------------
Confidence            99999998887655444566789999999988 777777666    68999998765432100                 


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEee-----cCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASA-----VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                              ........+.+++++|++..+++...     ..+.|..+|..+.+...            .......+..++
T Consensus       129 --------~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~~i~  188 (333)
T 2dg1_A          129 --------EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP------------IIQNISVANGIA  188 (333)
T ss_dssp             --------CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE------------EEEEESSEEEEE
T ss_pred             --------ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE------------eecCCCcccceE
Confidence                    00012346889999999987765331     03567777665433221            112223478899


Q ss_pred             eCCCCCEEEEE-ecCCeEEEEEcccCCCCceEeee-----eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC
Q 010390          282 QDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQHFS-----GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD  355 (512)
Q Consensus       282 ~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~  355 (512)
                      |+++++.|+.+ ..++.|.+||+.... .....+.     ..........++++++|+++++...++.|.+||.. ++. 
T Consensus       189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g-~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~-  265 (333)
T 2dg1_A          189 LSTDEKVLWVTETTANRLHRIALEDDG-VTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYP-  265 (333)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTS-SSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCE-
T ss_pred             ECCCCCEEEEEeCCCCeEEEEEecCCC-cCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCE-
Confidence            99999866554 467899999985321 1111110     00111245679999999988887778889999984 332 


Q ss_pred             Cceecccc------CCeEEEEeCCCCCCeEEEEeCC
Q 010390          356 PIKLKSHD------GEVTAVNWCPNEAGKIVTSSDD  385 (512)
Q Consensus       356 ~~~~~~h~------~~v~~v~~~~~~~~~l~s~~~d  385 (512)
                      ...+..+.      ..+.+++|+|++ ..|+.++.+
T Consensus       266 ~~~~~~~~~~~g~~~~~~~~~~~~dg-~~L~v~~~~  300 (333)
T 2dg1_A          266 IGQILIPGRDEGHMLRSTHPQFIPGT-NQLIICSND  300 (333)
T ss_dssp             EEEEECTTGGGTCSCBCCEEEECTTS-CEEEEEEEC
T ss_pred             EEEEEcCCCccccccCcceEEECCCC-CEEEEEeCc
Confidence            23333332      268999999997 556554444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.74  E-value=5.4e-16  Score=145.06  Aligned_cols=282  Identities=12%  Similarity=0.063  Sum_probs=179.7

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceecccc------C
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVA------H  107 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------h  107 (512)
                      .....+..+  .+++   +|||++|+++.          .++.|.+||..+.+.             +.++..      +
T Consensus        45 ~~i~~g~~p--~i~~---spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-------------~~~i~~~~~~~~~  106 (361)
T 2oiz_A           45 GMVPTAFNG--HVQV---SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-------------EKEISLPPKRVQG  106 (361)
T ss_dssp             EEEECCEEE--EEEE---CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-------------EEEEEECTTBCCB
T ss_pred             EEecCCCCC--ceEE---CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-------------EEEEEcCcccccc
Confidence            334444444  6777   99999999986          367899999876543             222211      2


Q ss_pred             CCcEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCeeeec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC
Q 010390          108 QNAIFDLCWIKEDTNILTASG--DQTIKIWDAEKKKCTGA-LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS  184 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  184 (512)
                      ......++++|||++|+++..  +++|.+||+.+++.+.. +.. . ....+.+.|++...+++.+.||.+.+|++....
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence            345667999999999998864  68999999999998877 653 2 233456788776788999999999999986422


Q ss_pred             CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390          185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA  264 (512)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~  264 (512)
                      .....     ...               ...+.....+ ..+.+.+++..++... .++.|.++|+..............
T Consensus       185 ~~~~~-----~~~---------------~~~~~~~~~~-~~~~~~~~g~~~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~  242 (361)
T 2oiz_A          185 KVASQ-----SRS---------------KQMFSVKDDP-IFIAPALDKDKAHFVS-YYGNVYSADFSGDEVKVDGPWSLL  242 (361)
T ss_dssp             SEEEE-----EEC---------------CCCSCTTTSC-BCSCCEECSSEEEEEB-TTSEEEEEECSSSSCEEEEEEESC
T ss_pred             cEeee-----ccc---------------cceEcCCCCc-eEEEecccCCEEEEEe-CCCeEEEEEecCCCceeccccccc
Confidence            11100     000               0000011111 1223356676666644 688999999875442211000000


Q ss_pred             cc-cccccccccCeeEEEeCCCCCEEEEEec-----------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390          265 ES-SSAKETRLHGISSLSQDSNGVFLTASCM-----------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA  332 (512)
Q Consensus       265 ~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  332 (512)
                      .. .............+++++++..++++..           .+.|.+||+.+.  +.+..+..+.    ...++|+|+|
T Consensus       243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--~~v~~i~~~~----p~~ia~spdg  316 (361)
T 2oiz_A          243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--QRVARIPGRD----ALSMTIDQQR  316 (361)
T ss_dssp             CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--EEEEEEECTT----CCEEEEETTT
T ss_pred             CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--cEEEEEecCC----eeEEEECCCC
Confidence            00 0000001122334789999888887654           358999998663  3444444432    5679999999


Q ss_pred             CEEEEecCCCCEEEEecCCC--CCCCceeccccCCeEEEEeCCCC
Q 010390          333 SHILSGSSDGNAYVWQVNKP--QADPIKLKSHDGEVTAVNWCPNE  375 (512)
Q Consensus       333 ~~l~~g~~dg~i~iw~~~~~--~~~~~~~~~h~~~v~~v~~~~~~  375 (512)
                      ++|++++. +.|.+||..++  +. +..+..+......++++|+|
T Consensus       317 ~~l~v~n~-~~v~v~D~~t~~l~~-~~~i~~~G~~P~~~~~~p~G  359 (361)
T 2oiz_A          317 NLMLTLDG-GNVNVYDISQPEPKL-LRTIEGAAEASLQVQFHPVG  359 (361)
T ss_dssp             TEEEEECS-SCEEEEECSSSSCEE-EEEETTSCSSEEEEEECCCS
T ss_pred             CEEEEeCC-CeEEEEECCCCccee-eEEeccCCCCcEEEEecCCC
Confidence            99998886 99999999987  54 34445667788999999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=1.3e-15  Score=140.90  Aligned_cols=257  Identities=9%  Similarity=0.041  Sum_probs=172.0

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCC------------------------CcEEEEECCCCCCccccccccccccceecc-
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDED------------------------GYVSLFDSRRKLPSFACHRENAEKARISDW-  104 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-  104 (512)
                      -+.+.+|++   +|+|+++++...+                        +.|.+||..++..             +..+ 
T Consensus        23 l~~v~~va~---d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-------------~~~~~   86 (329)
T 3fvz_A           23 PGQVSGVAL---DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-------------LQSSG   86 (329)
T ss_dssp             CSCEEEEEE---CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-------------EEEEC
T ss_pred             cCCceEEEE---CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-------------EeccC
Confidence            355778888   9999999888777                        4799999876542             2222 


Q ss_pred             ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-eeecc---------cCcCCCEEEEEeeCCCCCeEEEEe-CCC
Q 010390          105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-CTGAL---------MGHTGSIKSLCSHPTNSDILVSGS-RDG  173 (512)
Q Consensus       105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---------~~h~~~v~~l~~~~~~~~~l~s~~-~dg  173 (512)
                      .++-.....++++++|+++++...++.|++||..... .+..+         ..+-.....++++|+++.++++.+ .++
T Consensus        87 ~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A           87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS  166 (329)
T ss_dssp             TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred             CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence            2445689999999999988888889999999976542 34444         234457899999994437888876 689


Q ss_pred             cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL  253 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~  253 (512)
                      .|++||.. +........         .        .........+-.....++++|++..++++...++.|++||..++
T Consensus       167 ~I~~~~~~-g~~~~~~~~---------~--------g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G  228 (329)
T 3fvz_A          167 RIVQFSPS-GKFVTQWGE---------E--------SSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK  228 (329)
T ss_dssp             EEEEECTT-SCEEEEECE---------E--------CCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred             eEEEEcCC-CCEEEEecc---------C--------CCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence            99999943 321111000         0        00000001223358899999996667766778899999999876


Q ss_pred             cceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-------ecCCeEEEEEcccCCCCceEeeee-ceeceeEEE
Q 010390          254 KAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-------CMDHRIYLYNVLQLDKGPIQHFSG-CRIESFYVK  325 (512)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-------~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~  325 (512)
                      +......         ...+...+..++++| +..+.+.       ..+..|++||..+..  .+..+.. .........
T Consensus       229 ~~~~~~~---------~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~--~~~~~~~~~~~~~~p~~  296 (329)
T 3fvz_A          229 EFVREIK---------HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE--IIDVFKPVRKHFDMPHD  296 (329)
T ss_dssp             CEEEEEC---------CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCC--EEEEECCSSSCCSSEEE
T ss_pred             cEEEEEe---------ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe--EEEEEcCCCCccCCeeE
Confidence            6554331         123345677888888 4333333       334589999986532  3333321 122334678


Q ss_pred             EEECCCCCEEEEecCCCCEEEEecCCC
Q 010390          326 SEICPNASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       326 ~~~s~~~~~l~~g~~dg~i~iw~~~~~  352 (512)
                      ++++|+|.++++...++.|++|++...
T Consensus       297 ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          297 IVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            999999988888888999999998653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.72  E-value=2.3e-15  Score=154.49  Aligned_cols=255  Identities=7%  Similarity=-0.037  Sum_probs=169.3

Q ss_pred             cCCCcEEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc------
Q 010390          106 AHQNAIFDLCWIKEDTNILTASGDQ-----TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS------  174 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~------  174 (512)
                      +|...+..++|||||++|+.+..++     .|++||+.+++.......+ ..+..++|+|++ +.|+.++.++.      
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg-~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDG-KGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTS-SEEEEEECCCCSSCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCC-CEEEEEEECCccccccc
Confidence            4555789999999999999665533     8999999999876543222 236679999998 77777777665      


Q ss_pred             ----------EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec---
Q 010390          175 ----------FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV---  241 (512)
Q Consensus       175 ----------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~---  241 (512)
                                |++|++.++.....                       .+.....+...+..+.|+|+++.++++...   
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~-----------------------~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  256 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDI-----------------------LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD  256 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCE-----------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred             cccccCCCCEEEEEECCCCcccce-----------------------EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence                      99999876532100                       000111234457889999999999886642   


Q ss_pred             -CCeEEEEeccC------ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC----CeEEEEEcccCCCCc
Q 010390          242 -NSIVKFWDTRN------LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD----HRIYLYNVLQLDKGP  310 (512)
Q Consensus       242 -dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~  310 (512)
                       +..|++||+.+      +.....          .+..+...+.. .|+++|..|+..+..    +.|.+||+.+.....
T Consensus       257 ~~~~l~~~d~~~~~~~~~~~~~~~----------~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~  325 (710)
T 2xdw_A          257 PVNRLWYCDLQQESNGITGILKWV----------KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK  325 (710)
T ss_dssp             SCCEEEEEEGGGSSSSSCSSCCCE----------EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG
T ss_pred             CccEEEEEECcccccccCCccceE----------EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc
Confidence             56899999986      321111          12222333333 478888877766543    369999986643222


Q ss_pred             eEeeeeceeceeEEEEEECCCCCEEEEecCCCC--EEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe---CC
Q 010390          311 IQHFSGCRIESFYVKSEICPNASHILSGSSDGN--AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DD  385 (512)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~--i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~---~d  385 (512)
                      ...+..+.....+..++|++++.++++...++.  |++|++.+++. ...+..+.+.|..+.++|++..++++.+   ..
T Consensus       326 ~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~-~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P  404 (710)
T 2xdw_A          326 WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL-LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSP  404 (710)
T ss_dssp             CEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE-EEEECCCSSEEEEEECCTTCSEEEEEEECSSCC
T ss_pred             ceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE-EEecCCCCceEEEEecCCCCCEEEEEEeCCCCC
Confidence            233433332234666888878888888888885  55666655543 3456667788999999998833444433   45


Q ss_pred             CcEEEEeCCCCc
Q 010390          386 YTVRLWSLENSR  397 (512)
Q Consensus       386 g~i~vwd~~~~~  397 (512)
                      +.|++||+.+++
T Consensus       405 ~~i~~~d~~tg~  416 (710)
T 2xdw_A          405 GIIYHCDLTKEE  416 (710)
T ss_dssp             CEEEEEETTSSS
T ss_pred             CEEEEEECCCCc
Confidence            799999999887

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.72  E-value=3.4e-17  Score=155.99  Aligned_cols=259  Identities=8%  Similarity=-0.013  Sum_probs=156.6

Q ss_pred             EEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390          111 IFDLCWIKEDTNILTASGD---QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK  187 (512)
Q Consensus       111 V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  187 (512)
                      +..++|+|||++|+.....   ..|.+||+.+++......++......+.|+|++ +.|+.++.++.|.+||+.+++...
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCCCCcEE
Confidence            6778999999998876543   468899998887655444333323347899998 888888888899999998765322


Q ss_pred             CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe----ecCCeEEEEeccCccceecccCCC
Q 010390          188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS----AVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g----~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      .......     ....+............   ......+.|+|+++.+++..    ..+..|.+||+.+++...      
T Consensus       117 ~~~~~~~-----~~~~g~~l~~~~~~~~~---~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~------  182 (396)
T 3c5m_A          117 IYTVDEE-----WKGYGTWVANSDCTKLV---GIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEV------  182 (396)
T ss_dssp             EEECCTT-----EEEEEEEEECTTSSEEE---EEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEE------
T ss_pred             EEecccc-----cCCCCCEEEeccCCccc---cccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEe------
Confidence            1110000     00000000000000000   00001134667777665432    356789999998766432      


Q ss_pred             ccccccccccccCeeEEEeCC-CCCEEEEEecC------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390          264 AESSSAKETRLHGISSLSQDS-NGVFLTASCMD------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL  336 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  336 (512)
                            ...+...+..+.|+| ++..|+..+.+      ..|.+||+....   ...+........+..++|+|+|++|+
T Consensus       183 ------~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~  253 (396)
T 3c5m_A          183 ------IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWIPDGSAMA  253 (396)
T ss_dssp             ------EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEECTTSSCEE
T ss_pred             ------eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEECCCCCEEE
Confidence                  223445688999999 78877766543      368888875432   12222211123466789999999887


Q ss_pred             EecCC-----CCEEEEecCCCCCCCceeccccCCeEEEEeCC-CCCCeEEEEe----------------CCCcEEEEeCC
Q 010390          337 SGSSD-----GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP-NEAGKIVTSS----------------DDYTVRLWSLE  394 (512)
Q Consensus       337 ~g~~d-----g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~l~s~~----------------~dg~i~vwd~~  394 (512)
                      .++.+     +.|++||+.+++..  .+.... ... +.|+| ++ .++++++                .++.|++||+.
T Consensus       254 ~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~-~~~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          254 YVSYFKGQTDRVIYKANPETLENE--EVMVMP-PCS-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             EEEEETTTCCEEEEEECTTTCCEE--EEEECC-SEE-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             EEecCCCCccceEEEEECCCCCeE--EeeeCC-CCC-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            66543     34999999876542  222112 233 88999 99 6777654                34789999998


Q ss_pred             CCcc
Q 010390          395 NSRC  398 (512)
Q Consensus       395 ~~~~  398 (512)
                      +++.
T Consensus       329 ~~~~  332 (396)
T 3c5m_A          329 AKSA  332 (396)
T ss_dssp             TTBC
T ss_pred             cCce
Confidence            8764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=9.3e-15  Score=143.58  Aligned_cols=298  Identities=11%  Similarity=0.032  Sum_probs=200.0

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECC--CCCCccccccccccccceeccccCCCcEEEEEEe----cCCCEEEEE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR--RKLPSFACHRENAEKARISDWVAHQNAIFDLCWI----KEDTNILTA  126 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s----~~~~~l~s~  126 (512)
                      +..+.+   ||||+++++++.|+.|.+||+.  +.+             .+.++... .....++|+    |||++++++
T Consensus       199 p~~v~~---SpDGr~lyv~~~dg~V~viD~~~~t~~-------------~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~  261 (567)
T 1qks_A          199 VHISRL---SASGRYLFVIGRDGKVNMIDLWMKEPT-------------TVAEIKIG-SEARSIETSKMEGWEDKYAIAG  261 (567)
T ss_dssp             EEEEEE---CTTSCEEEEEETTSEEEEEETTSSSCC-------------EEEEEECC-SEEEEEEECCSTTCTTTEEEEE
T ss_pred             ccceEE---CCCCCEEEEEcCCCeEEEEECCCCCCc-------------EeEEEecC-CCCceeEEccccCCCCCEEEEE
Confidence            345555   9999999999999999999985  332             23344332 346799999    699998876


Q ss_pred             eC-CCcEEEEeCCCCeeeecccC----------cCC-CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390          127 SG-DQTIKIWDAEKKKCTGALMG----------HTG-SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       127 ~~-dg~i~iwd~~~~~~~~~~~~----------h~~-~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                      .. +++|.|+|..+.+.+..+..          |.. .+..+..+++++.++++...+|.|.++|.........      
T Consensus       262 n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v------  335 (567)
T 1qks_A          262 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT------  335 (567)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE------
T ss_pred             EccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee------
Confidence            65 59999999999988776542          222 6788889988766777777789999999875431100      


Q ss_pred             eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL  274 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  274 (512)
                                          ..........++.|+|++++++++...++.|.++|+.+++.........      ...|.
T Consensus       336 --------------------~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg------~~Php  389 (567)
T 1qks_A          336 --------------------TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG------QTPHP  389 (567)
T ss_dssp             --------------------EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS------SSBCC
T ss_pred             --------------------eeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC------cCCCC
Confidence                                0011223466789999999999887778999999999887654331100      01111


Q ss_pred             cCeeEEE-eCCCCCEEE-EEe-cCCeEEEEEcccCC-----CCceEeeeeceeceeEEEEEECCCCCEEEEecC------
Q 010390          275 HGISSLS-QDSNGVFLT-ASC-MDHRIYLYNVLQLD-----KGPIQHFSGCRIESFYVKSEICPNASHILSGSS------  340 (512)
Q Consensus       275 ~~i~~~~-~~~~~~~l~-~~~-~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------  340 (512)
                      +  .... ++|++..++ ++. .++.|.++|.....     .+.+..+......  -..+..+|+++++.+...      
T Consensus       390 g--~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g--~~~i~~~p~~~~l~v~~~~~~~~~  465 (567)
T 1qks_A          390 G--RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG--SLFIKTHPNSQYLYVDATLNPEAE  465 (567)
T ss_dssp             T--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC--CCCEECCTTCSEEEEECTTCSSHH
T ss_pred             c--cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC--CEEEEeCCCCCeEEEecCCCCCcc
Confidence            1  1222 578755444 443 46899999986532     2334444433211  122678999999987653      


Q ss_pred             -CCCEEEEecCCC-----CCCCceec--------cccCCeEEEEeCCCCCCeEEEEe----CCCcEEEEeCCCCcccccc
Q 010390          341 -DGNAYVWQVNKP-----QADPIKLK--------SHDGEVTAVNWCPNEAGKIVTSS----DDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       341 -dg~i~iw~~~~~-----~~~~~~~~--------~h~~~v~~v~~~~~~~~~l~s~~----~dg~i~vwd~~~~~~~~~~  402 (512)
                       .++|.++|+.+.     ......+.        .-...+..+.|+++|...++|..    .++.|.|+|..+++++...
T Consensus       466 ~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i  545 (567)
T 1qks_A          466 ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI  545 (567)
T ss_dssp             HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred             cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence             358999999876     22112221        11347899999999955555543    3799999999999887764


Q ss_pred             c
Q 010390          403 S  403 (512)
Q Consensus       403 ~  403 (512)
                      .
T Consensus       546 ~  546 (567)
T 1qks_A          546 K  546 (567)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.72  E-value=6.9e-14  Score=127.44  Aligned_cols=287  Identities=8%  Similarity=-0.000  Sum_probs=189.9

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT  125 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  125 (512)
                      +..+...+.+|.+   +++|+++++...++.|.+||.. +...            ......+...+.++++.+++..+++
T Consensus        10 ~~~~~~~~~~i~~---d~~g~l~v~~~~~~~v~~~d~~-~~~~------------~~~~~~~~~~~~~i~~~~~g~l~v~   73 (299)
T 2z2n_A           10 LTNQDTGPYGITV---SDKGKVWITQHKANMISCINLD-GKIT------------EYPLPTPDAKVMCLTISSDGEVWFT   73 (299)
T ss_dssp             CCSSSCCEEEEEE---CTTSCEEEEETTTTEEEEECTT-CCEE------------EEECSSTTCCEEEEEECTTSCEEEE
T ss_pred             CCCcCCCccceEE---CCCCCEEEEecCCCcEEEEcCC-CCeE------------EecCCcccCceeeEEECCCCCEEEe
Confidence            3345567888888   9999988877768899999987 3210            1111234578999999999988887


Q ss_pred             EeCCCcEEEEeCCCCee-eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          126 ASGDQTIKIWDAEKKKC-TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       126 ~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      ...++.|..||.. ++. ...+......+.++++.+++ .++++...++.|..||. ++.....                
T Consensus        74 ~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~----------------  134 (299)
T 2z2n_A           74 ENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREY----------------  134 (299)
T ss_dssp             ETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE----------------
T ss_pred             CCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEe----------------
Confidence            7768889999976 332 22222345578999999977 77777777889999997 3321100                


Q ss_pred             ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS  284 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  284 (512)
                                ........+..+++.+++..+++ ...++.|..||. +++....          ........+..+++++
T Consensus       135 ----------~~~~~~~~~~~i~~~~~g~l~v~-~~~~~~i~~~~~-~g~~~~~----------~~~~~~~~~~~i~~~~  192 (299)
T 2z2n_A          135 ----------ELPNKGSYPSFITLGSDNALWFT-ENQNNAIGRITE-SGDITEF----------KIPTPASGPVGITKGN  192 (299)
T ss_dssp             ----------ECSSTTCCEEEEEECTTSCEEEE-ETTTTEEEEECT-TCCEEEE----------ECSSTTCCEEEEEECT
T ss_pred             ----------cCCCCCCCCceEEEcCCCCEEEE-eCCCCEEEEEcC-CCcEEEe----------eCCCCCCcceeEEECC
Confidence                      00112346889999999876654 435689999998 5443321          0112234578899999


Q ss_pred             CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccC
Q 010390          285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDG  364 (512)
Q Consensus       285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~  364 (512)
                      ++.++++...++.|.+||. +..   ...+........+..++++++|+++++...++.|..||.. +.........+..
T Consensus       193 ~g~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~  267 (299)
T 2z2n_A          193 DDALWFVEIIGNKIGRITT-SGE---ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSA  267 (299)
T ss_dssp             TSSEEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEEEEECSSSSC
T ss_pred             CCCEEEEccCCceEEEECC-CCc---EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-CceEEEeCCCCCC
Confidence            9997777667889999997 322   2222222122456789999999977776677889999983 3321111234456


Q ss_pred             CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          365 EVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       365 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      .+.++++ +++ .++++.+ .+.|..++..+++
T Consensus       268 ~~~~i~~-~~g-~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          268 EPHGICF-DGE-TIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             CEEEEEE-CSS-CEEEEET-TTEEEEEEEC---
T ss_pred             ccceEEe-cCC-CEEEEec-CCcEEEEEcCccc
Confidence            7999999 877 6666655 5667777877654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=4.2e-15  Score=138.77  Aligned_cols=252  Identities=9%  Similarity=0.059  Sum_probs=160.4

Q ss_pred             CCcEEEEee---------CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---C-
Q 010390           64 NSHIFAVSD---------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---Q-  130 (512)
Q Consensus        64 ~~~~latg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g-  130 (512)
                      ||+++|...         .++.|.+||+.++..              ..+    ..+..++|+|||++|+.++.+   + 
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------------~~l----~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNAR--------------RFI----ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE--------------EEE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCce--------------EEc----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            777776642         256799999876532              122    468889999999999977654   2 


Q ss_pred             -cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---------------------------CcEEEEeCCC
Q 010390          131 -TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---------------------------GSFAIWDLRC  182 (512)
Q Consensus       131 -~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---------------------------g~i~vwd~~~  182 (512)
                       .|.+||+.+++.......+ . +..+.|+|++ +.|+.++.+                           ..|.+||+.+
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~  161 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAK-N-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES  161 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEES-E-EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred             ceEEEEECCCCceEEEEcCC-C-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence             4888899888766554433 3 9999999998 666666532                           4677788765


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC------C-eEEEEeccCccc
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN------S-IVKFWDTRNLKA  255 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d------g-~i~iwd~~~~~~  255 (512)
                      ++..                           ..+.. . .+..+.|+|++ .+++ +..+      . ...+|.+++++.
T Consensus       162 ~~~~---------------------------~~l~~-~-~~~~~~~spdg-~~~~-~~~~~~~~~~~~~~~l~~~d~~~~  210 (347)
T 2gop_A          162 EEVI---------------------------EEFEK-P-RFSSGIWHRDK-IVVN-VPHREIIPQYFKFWDIYIWEDGKE  210 (347)
T ss_dssp             TEEE---------------------------EEEEE-E-TTCEEEEETTE-EEEE-EECCCSSCCSSCCEEEEEEETTEE
T ss_pred             CeEE---------------------------eeecC-C-CcccccCCCCe-EEEE-EecccccccccccccEEEeCCCce
Confidence            4310                           01111 2 57788999999 5554 4333      2 334444443322


Q ss_pred             eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC--------CeEEEEEcccCCCCceEeeeeceeceeEEE-E
Q 010390          256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD--------HRIYLYNVLQLDKGPIQHFSGCRIESFYVK-S  326 (512)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~  326 (512)
                      .            .+..+ ..+..+  +|+|+.|+.++.+        ..|.+||  ..  . ...+... ....+.. +
T Consensus       211 ~------------~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~--~-~~~l~~~-~~~~~~~~~  269 (347)
T 2gop_A          211 E------------KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK--E-VMGILDE-VDRGVGQAK  269 (347)
T ss_dssp             E------------EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS--C-EEESSTT-CCSEEEEEE
T ss_pred             E------------EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC--c-eEecccc-CCcccCCcc
Confidence            1            12222 334443  8999988877644        3688887  21  1 1222111 1223444 7


Q ss_pred             EECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcE-EEEeCCCCc
Q 010390          327 EICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTV-RLWSLENSR  397 (512)
Q Consensus       327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i-~vwd~~~~~  397 (512)
                      .|+ ++ ++++++.++.++|| +.+++.  ..+..+.+.|.+++|+| .  ++++++.++.. .+|.++ ++
T Consensus       270 ~~s-dg-~~~~~~~~~~~~l~-~~~g~~--~~~~~~~~~v~~~~~s~-~--~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          270 IKD-GK-VYFTLFEEGSVNLY-IWDGEI--KPIAKGRHWIMGFDVDE-I--VVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             EET-TE-EEEEEEETTEEEEE-EESSSE--EEEECSSSEEEEEEESS-S--EEEEEECSSSCCEEEEES-SS
T ss_pred             EEc-Cc-EEEEEecCCcEEEE-EcCCce--EEEecCCCeEEeeeeeC-c--EEEEEcCCCChHHheEeC-Cc
Confidence            899 88 88899999999999 874332  34445678899999999 4  77777766654 777776 54

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.70  E-value=1e-15  Score=156.56  Aligned_cols=284  Identities=8%  Similarity=-0.008  Sum_probs=176.7

Q ss_pred             cCCCcEEEEeeCCC---cEEEEEC--CCCCCccccccccccccceec----cccCCCcEEEEEEecCCCEEE-----EEe
Q 010390           62 SKNSHIFAVSDEDG---YVSLFDS--RRKLPSFACHRENAEKARISD----WVAHQNAIFDLCWIKEDTNIL-----TAS  127 (512)
Q Consensus        62 s~~~~~latg~~dg---~i~iwd~--~~~~~~~~~~~~~~~~~~~~~----~~~h~~~V~~l~~s~~~~~l~-----s~~  127 (512)
                      +|+|++++....++   .-.||-.  ..+..           ..+..    ..+|...+.+++|||||++|+     .|+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~  144 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQE-----------KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAA  144 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCC-----------EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTC
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCc-----------EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCC
Confidence            57898888765543   3445543  33221           11211    135666899999999999999     344


Q ss_pred             CCCcEEEEeCCCCeee-ec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCc-------------EEEEeCCCCCCCCCcccc
Q 010390          128 GDQTIKIWDAEKKKCT-GA-LMGHTGSIKSLCSHPTNSDILVSGSRDGS-------------FAIWDLRCKSSPKSNCAE  192 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~-~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-------------i~vwd~~~~~~~~~~~~~  192 (512)
                      .+..|++||+.+++.+ .. +...  ....++|+|++ ..|+.++.|..             |++|++.++.....    
T Consensus       145 ~~~~i~v~dl~tg~~~~~~~~~~~--~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----  217 (695)
T 2bkl_A          145 DEAVLHVIDVDSGEWSKVDVIEGG--KYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT----  217 (695)
T ss_dssp             SCCEEEEEETTTCCBCSSCCBSCC--TTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE----
T ss_pred             ceEEEEEEECCCCCCcCCcccCcc--cccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce----
Confidence            4578999999999865 21 1111  12678999998 78888887765             99999976542110    


Q ss_pred             ceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-C--eEEEEeccCccceecccCCCcccccc
Q 010390          193 SFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-S--IVKFWDTRNLKAQITQAWPHAESSSA  269 (512)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~  269 (512)
                                         .+.....+...+.++.|+|+|+.++++...+ +  .|.+||..++...            .
T Consensus       218 -------------------lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~------------~  266 (695)
T 2bkl_A          218 -------------------VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR------------L  266 (695)
T ss_dssp             -------------------EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE------------E
T ss_pred             -------------------EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE------------E
Confidence                               0111123345788999999999998866433 2  5666655443222            1


Q ss_pred             ccccccCeeEEEeCCCCCEEEEEe---cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390          270 KETRLHGISSLSQDSNGVFLTASC---MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV  346 (512)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  346 (512)
                      +..+...+....+ ++|.+++.+.   .++.|.+||+.+........+..+.....+..++++ ++.++++...|+..+|
T Consensus       267 l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          267 LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred             eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence            2233334555555 5666444443   258899999866432222333333223345567777 6778888888998888


Q ss_pred             EecCC-CCCCCceeccc-cCCeEEEEeCCCCCCeEE-EEe---CCCcEEEEeCCCCcc
Q 010390          347 WQVNK-PQADPIKLKSH-DGEVTAVNWCPNEAGKIV-TSS---DDYTVRLWSLENSRC  398 (512)
Q Consensus       347 w~~~~-~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~-s~~---~dg~i~vwd~~~~~~  398 (512)
                      |.+.. ++. ...+..+ .+.|..++++|++ ..++ +.+   ..+.|++||+.+++.
T Consensus       345 ~~~~~~g~~-~~~l~~~~~~~v~~~~~s~d~-~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          345 RVATLKGKP-VRTVQLPGVGAASNLMGLEDL-DDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEETTCCE-EEECCCSSSSEECCCBSCTTC-SEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEeCCCCe-eEEecCCCCeEEEEeecCCCC-CEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            86652 322 2334334 5678889999988 5554 333   457899999998774

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.70  E-value=1.2e-14  Score=134.07  Aligned_cols=278  Identities=10%  Similarity=0.005  Sum_probs=180.6

Q ss_pred             CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCC
Q 010390           73 EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGS  152 (512)
Q Consensus        73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~  152 (512)
                      .++.|.+||.++++........       ..-.........+.+. +++.+++...++.|.+||..+++.+.++. ....
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~-------~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~   85 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYR-------ANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTS   85 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHH-------HHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSS
T ss_pred             CCceEEEEECCCCEEhhhhHhh-------hcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCC
Confidence            4889999999876432111000       0001222456778774 44555566668999999999999988885 3467


Q ss_pred             EEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecC
Q 010390          153 IKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE  232 (512)
Q Consensus       153 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  232 (512)
                      ...+++++++ .++++...++.|.+||..+.+........                      ...........+++  ++
T Consensus        86 p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g----------------------~~~~~~~~p~~i~~--~~  140 (328)
T 3dsm_A           86 PRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECP----------------------DMDMESGSTEQMVQ--YG  140 (328)
T ss_dssp             EEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECT----------------------TCCTTTCBCCCEEE--ET
T ss_pred             CcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcC----------------------CccccCCCcceEEE--EC
Confidence            8899998887 66666558899999999865432111000                      00000113445666  45


Q ss_pred             CEEEEEee-cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC----------CeEEEE
Q 010390          233 VSIATASA-VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD----------HRIYLY  301 (512)
Q Consensus       233 ~~l~~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~  301 (512)
                      ..++++.. .++.|.++|+.+++.......            ......+.++++|++++++..+          +.|.++
T Consensus       141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          141 KYVYVNCWSYQNRILKIDTETDKVVDELTI------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             TEEEEEECTTCCEEEEEETTTTEEEEEEEC------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             CEEEEEcCCCCCEEEEEECCCCeEEEEEEc------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence            56666554 488999999998776543211            1235678899999977776554          789999


Q ss_pred             EcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce-eccccCCeEEEEeCCCCCCeEE
Q 010390          302 NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK-LKSHDGEVTAVNWCPNEAGKIV  380 (512)
Q Consensus       302 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l~  380 (512)
                      |..+.+  ....+.. ........++++|++++|+++..  .|.+||..+++..... ...+.....+++++|++..+++
T Consensus       209 d~~t~~--v~~~~~~-~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyv  283 (328)
T 3dsm_A          209 DAETFT--VEKQFKF-KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYV  283 (328)
T ss_dssp             ETTTTE--EEEEEEC-CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEE
T ss_pred             ECCCCe--EEEEEec-CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEE
Confidence            986532  2222221 11124567999999999887754  8999999877642211 2222467899999995537777


Q ss_pred             EE----eCCCcEEEEeCCCCcccccc
Q 010390          381 TS----SDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       381 s~----~~dg~i~vwd~~~~~~~~~~  402 (512)
                      +.    ..++.|.+||.+ ++.+..+
T Consensus       284 a~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          284 ADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             EECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             EcccccccCCEEEEECCC-CCEEEEE
Confidence            77    678999999998 7766653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.69  E-value=1.9e-15  Score=154.08  Aligned_cols=244  Identities=9%  Similarity=-0.008  Sum_probs=148.6

Q ss_pred             cCCCcE-EEEeeC-CCcEEEEECC--C-CCCccccccccccccceecccc-----CCCcEEEEEEecCCCEEEEEeCC--
Q 010390           62 SKNSHI-FAVSDE-DGYVSLFDSR--R-KLPSFACHRENAEKARISDWVA-----HQNAIFDLCWIKEDTNILTASGD--  129 (512)
Q Consensus        62 s~~~~~-latg~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~-----h~~~V~~l~~s~~~~~l~s~~~d--  129 (512)
                      ||||++ ||.+.. +..|.+|++.  + +.              ...+..     |...+.+++|+|||+.|++++.+  
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~--------------~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~  152 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV--------------PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT  152 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCC--------------CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCC--------------CEeccCCccCCCCccccCcEECCCCCEEEEEEeccc
Confidence            499998 776653 5667777765  2 32              222333     67789999999999999988876  


Q ss_pred             --------CcEEEEeCCC------Ceeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCC--------CcEEEEeCC-CCCC
Q 010390          130 --------QTIKIWDAEK------KKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRD--------GSFAIWDLR-CKSS  185 (512)
Q Consensus       130 --------g~i~iwd~~~------~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~vwd~~-~~~~  185 (512)
                              ..|++||+.+      ++.. .+. .+...+..++|+|++ +.|+.++.+        ..|.+||+. ++..
T Consensus       153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~  230 (662)
T 3azo_A          153 GEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRF  230 (662)
T ss_dssp             SSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred             CCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence                    5899999988      5543 444 556678889999998 777776644        379999987 3310


Q ss_pred             CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCC
Q 010390          186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~  263 (512)
                      .                        ........+...+..+.|+|+|+ +++++..++  .|.+||+.+++...... ..
T Consensus       231 ~------------------------~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~  284 (662)
T 3azo_A          231 A------------------------DTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCR-RE  284 (662)
T ss_dssp             E------------------------EEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSC-CS
T ss_pred             c------------------------ccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccc-cc
Confidence            0                        00011123356789999999999 555565777  67777765554332111 00


Q ss_pred             ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEE-EECCCCCEEEEecCCC
Q 010390          264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKS-EICPNASHILSGSSDG  342 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~g~~dg  342 (512)
                      ...  ....-...+..++|++++.+++++.. +.+++|.+... ......+..+.  ..+..+ +++.+.-++++++.+.
T Consensus       285 ~~~--~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~-~~~~~~l~~~~--~~~~~~~s~~~~~~~~~~~~~~~  358 (662)
T 3azo_A          285 EEF--AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE-SGELVDAAGPW--TEWAATLTVSGTRAVGVAASPRT  358 (662)
T ss_dssp             SBS--SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT-TTEEEECCSSC--CEEEEEEEEETTEEEEEEEETTE
T ss_pred             ccc--cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC-CCcEEEecCCC--CeEEEEEecCCCEEEEEEcCCCC
Confidence            000  00000112567899999999999988 99999954321 12234443332  223334 4433333344455554


Q ss_pred             C--EEEEecCCCC
Q 010390          343 N--AYVWQVNKPQ  353 (512)
Q Consensus       343 ~--i~iw~~~~~~  353 (512)
                      .  |.++|+.+++
T Consensus       359 ~~~i~~~d~~~g~  371 (662)
T 3azo_A          359 AYEVVELDTVTGR  371 (662)
T ss_dssp             EEEEEEEETTTCC
T ss_pred             CCEEEEEECCCCc
Confidence            4  5555655554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=8.7e-15  Score=133.28  Aligned_cols=252  Identities=8%  Similarity=-0.057  Sum_probs=169.0

Q ss_pred             eeccccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          101 ISDWVAHQNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      +..+..+.....+++|+|+++ .++++..++.|..||..++  ...+..+...+.++++++++ .++++...++.|.+||
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQR   96 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEEC
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEc
Confidence            444555667889999999998 6778888999999999877  55666677789999999988 7777776678999999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE---ee-------------cCC
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA---SA-------------VNS  243 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---g~-------------~dg  243 (512)
                      ..+++.......                       ........+..++++|+|..+++.   |.             ..+
T Consensus        97 ~~~g~~~~~~~~-----------------------~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A           97 EPGGEWESIADS-----------------------FEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR  153 (296)
T ss_dssp             STTCCEEEEECE-----------------------ETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred             CCCCcEEEEeec-----------------------cCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc
Confidence            876542110000                       000112346789999999877653   21             134


Q ss_pred             eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc-CCC-CceEeeeeceece
Q 010390          244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ-LDK-GPIQHFSGCRIES  321 (512)
Q Consensus       244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~~~  321 (512)
                      .|..++.. ++..            ...........++|+|+++.|++.+.++.|.+||+.. ... .....+  .....
T Consensus       154 ~l~~~~~~-g~~~------------~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~  218 (296)
T 3e5z_A          154 WVFRLAPD-GTLS------------APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPG  218 (296)
T ss_dssp             EEEEECTT-SCEE------------EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSS
T ss_pred             EEEEECCC-CCEE------------EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCC
Confidence            56666654 2221            1222334568899999999887777789999999862 111 111222  11122


Q ss_pred             eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEe-CCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          322 FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNW-CPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       322 ~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      .+..++++++|+++++.  ++.|.+|+.. ++. ...+..+.. +++++| .|++ +.|+.++.++ +.-++..++++.+
T Consensus       219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~-~~~~~~~~~-~~~~~f~~~d~-~~L~v~t~~~-l~~~~~~~~~~~~  291 (296)
T 3e5z_A          219 KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE-LGRVLTPQT-TSNLCFGGPEG-RTLYMTVSTE-FWSIETNVRGLEH  291 (296)
T ss_dssp             CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE-EEEEECSSC-CCEEEEESTTS-CEEEEEETTE-EEEEECSCCBCCC
T ss_pred             CCCeEEECCCCCEEEEc--CCeEEEECCC-CCE-EEEEECCCC-ceeEEEECCCC-CEEEEEcCCe-EEEEEcccccccc
Confidence            34468999999977766  7789999986 333 345556666 999999 5787 7777777764 5556676666544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.67  E-value=5.5e-14  Score=126.12  Aligned_cols=243  Identities=6%  Similarity=-0.086  Sum_probs=164.4

Q ss_pred             cEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390          110 AIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  188 (512)
                      ...+++++++++.++ +...++.|.+||..+.........+...+.++++.+++ +++++.. ++.|.+||.........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEeee
Confidence            788999999998777 54678899999976654433223333567889999987 6666655 88999999765432110


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccc
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS  268 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  268 (512)
                                                 .......+..+++.+++..+++ ...++.|.+|+..+......          
T Consensus       103 ---------------------------~~~~~~~p~~i~~~~~g~l~v~-~~~~~~i~~~~~~~~~~~~~----------  144 (270)
T 1rwi_B          103 ---------------------------PFDGLNYPEGLAVDTQGAVYVA-DRGNNRVVKLAAGSKTQTVL----------  144 (270)
T ss_dssp             ---------------------------CCCSCSSEEEEEECTTCCEEEE-EGGGTEEEEECTTCCSCEEC----------
T ss_pred             ---------------------------ecCCcCCCcceEECCCCCEEEE-ECCCCEEEEEECCCceeEee----------
Confidence                                       0011246789999999885554 44578899997655433221          


Q ss_pred             cccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          269 AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                       .......+..++++++|+++++...++.|.+||.....   ....... .......++++++|.++++...++.|.+|+
T Consensus       145 -~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~---~~~~~~~-~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~  219 (270)
T 1rwi_B          145 -PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN---QVVLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLL  219 (270)
T ss_dssp             -CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC---EEECCCS-SCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred             -ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc---eEeeccc-CCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence             11122357889999999977777778899999975422   1111111 113466799999998888877788999999


Q ss_pred             cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      ....... .....+...+.++++++++ .++++...++.|+++++...+..
T Consensus       220 ~~~~~~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          220 AGSTTST-VLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             TTCSCCE-ECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGGGSC
T ss_pred             CCCCcce-eeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEcCCCcccc
Confidence            8664331 1222333578999999999 78899999999999999876643

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=3.5e-14  Score=145.70  Aligned_cols=246  Identities=8%  Similarity=0.009  Sum_probs=158.5

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCC-----cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDG-----YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      |...+.+++|   ||||++||.+..++     .|++||+.+++.             ..... ....+..++|+|||+.|
T Consensus       123 ~~~~~~~~~~---SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~-------------~~~~~-~~~~~~~~~wspDg~~l  185 (710)
T 2xdw_A          123 GTVALRGYAF---SEDGEYFAYGLSASGSDWVTIKFMKVDGAKE-------------LPDVL-ERVKFSCMAWTHDGKGM  185 (710)
T ss_dssp             SCEEEEEEEE---CTTSSEEEEEEEETTCSCEEEEEEETTTTEE-------------EEEEE-EEECSCCEEECTTSSEE
T ss_pred             CCEEEEEEEE---CCCCCEEEEEEcCCCCceEEEEEEECCCCCC-------------Ccccc-cCcccceEEEEeCCCEE
Confidence            3334455555   99999999875543     899999987643             11111 11225679999999999


Q ss_pred             EEEeCCCc----------------EEEEeCCCCee----eecccCcCCCEEEEEeeCCCCCeEEEEeC-----CCcEEEE
Q 010390          124 LTASGDQT----------------IKIWDAEKKKC----TGALMGHTGSIKSLCSHPTNSDILVSGSR-----DGSFAIW  178 (512)
Q Consensus       124 ~s~~~dg~----------------i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~vw  178 (512)
                      +.++.++.                |++|++.+++.    +.....|...+..+.|+|++ ++|+.++.     +..|.+|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~  264 (710)
T 2xdw_A          186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYC  264 (710)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEE
T ss_pred             EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEE
Confidence            98888766                99999988752    22333355668899999999 66665553     5689999


Q ss_pred             eCCC------CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC---CeEEEEe
Q 010390          179 DLRC------KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN---SIVKFWD  249 (512)
Q Consensus       179 d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d---g~i~iwd  249 (512)
                      |+.+      +...                          ...+..+...+.. .|++++..+++.+..+   +.|.+||
T Consensus       265 d~~~~~~~~~~~~~--------------------------~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d  317 (710)
T 2xdw_A          265 DLQQESNGITGILK--------------------------WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINID  317 (710)
T ss_dssp             EGGGSSSSSCSSCC--------------------------CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             ECcccccccCCccc--------------------------eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEe
Confidence            9875      2110                          0111222233333 4788999888766433   3799999


Q ss_pred             ccCccce-ecccCCCccccccccccc--cCeeEEEeCCCCCEEEEEecCCe--EEEEEcccCCCCceEeeeeceeceeEE
Q 010390          250 TRNLKAQ-ITQAWPHAESSSAKETRL--HGISSLSQDSNGVFLTASCMDHR--IYLYNVLQLDKGPIQHFSGCRIESFYV  324 (512)
Q Consensus       250 ~~~~~~~-~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~  324 (512)
                      +.++... ..          .+..+.  ..+..+.|++++.++++...++.  |.+||+.++  .....+..+  ...+.
T Consensus       318 ~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--~~~~~l~~~--~~~v~  383 (710)
T 2xdw_A          318 FTDPEESKWK----------VLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--ALLKIFPLE--VGSVV  383 (710)
T ss_dssp             TTSCCGGGCE----------EEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--CEEEEECCC--SSEEE
T ss_pred             CCCCCcccce----------eccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--CEEEecCCC--CceEE
Confidence            9876421 11          112221  24778889888888888888885  555665332  233334333  34566


Q ss_pred             EEEECCCCCEEEEe----cCCCCEEEEecCCCC
Q 010390          325 KSEICPNASHILSG----SSDGNAYVWQVNKPQ  353 (512)
Q Consensus       325 ~~~~s~~~~~l~~g----~~dg~i~iw~~~~~~  353 (512)
                      .++++|+++.++..    ...+.|++||+.+++
T Consensus       384 ~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          384 GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            78899998766532    235789999998765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.65  E-value=3.2e-13  Score=126.24  Aligned_cols=283  Identities=8%  Similarity=-0.071  Sum_probs=178.3

Q ss_pred             cCCCcEEEEeeC--CC---cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe---------
Q 010390           62 SKNSHIFAVSDE--DG---YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS---------  127 (512)
Q Consensus        62 s~~~~~latg~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~---------  127 (512)
                      +|+++++.+...  .+   .|.+||..+++.             +.++.....+  .++++||+++|+.+.         
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~-------------~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg   93 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSI-------------LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeE-------------EEEecCCCCC--CeEECCCCCEEEEEeccccccccC
Confidence            578887777653  33   789999887643             3334333334  899999999999875         


Q ss_pred             -CCCcEEEEeCCCCeeeecccCc-------CCCEEEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCC-ccccceee
Q 010390          128 -GDQTIKIWDAEKKKCTGALMGH-------TGSIKSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKS-NCAESFVF  196 (512)
Q Consensus       128 -~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~  196 (512)
                       .++.|.+||..+.+.+..+...       ......+.|+|++ ++|+.+..  ++.|.++| .+++.... ..      
T Consensus        94 ~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~~i~------  165 (373)
T 2mad_H           94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQLLS------  165 (373)
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeEEcC------
Confidence             3678999999988877665422       1234578999999 66666653  57899999 87654321 10      


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                            .   -.++.+.+++...+++.+.||.+.++|. +++.........     .. ....+
T Consensus       166 ----------------------~---~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~-----~~-~~~~p  213 (373)
T 2mad_H          166 ----------------------S---PTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA-----ML-TAAQN  213 (373)
T ss_pred             ----------------------C---CceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc-----cc-cCCcc
Confidence                                  0   0124556776655555557999999999 665542210000     00 00111


Q ss_pred             -eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece--------eceeEEEEEECCCCCEEEEecC-------
Q 010390          277 -ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR--------IESFYVKSEICPNASHILSGSS-------  340 (512)
Q Consensus       277 -i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~g~~-------  340 (512)
                       .....+.+++..++..+.++.+.+.|+..........+.-..        .......++++++++.++++..       
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~  293 (373)
T 2mad_H          214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL  293 (373)
T ss_pred             eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence             122445555555554457889999998643222222111000        0111223678999888876543       


Q ss_pred             ---CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCCCccccc
Q 010390          341 ---DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       341 ---dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~  401 (512)
                         ++.|.++|+.+.+.. ..+. -.....+++|+||+..+++++. .++.|.+||+.+++.+..
T Consensus       294 ~~~~~~V~VID~~t~~vv-~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          294 HAAAKEVTSVTGLVGQTS-SQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             cCCCCeEEEEECCCCEEE-EEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence               357999999887653 3332 2336899999999932777776 589999999999987765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.64  E-value=3.1e-13  Score=125.30  Aligned_cols=249  Identities=11%  Similarity=0.048  Sum_probs=161.3

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .....+.++...+.+++|   +++|++++++..++.|.+||.+++..             ......+...+.+++|++++
T Consensus        35 ~~~~~~~~~~~~~~~~~~---~~~g~l~~~~~~~~~i~~~d~~~~~~-------------~~~~~~~~~~~~~i~~~~dg   98 (333)
T 2dg1_A           35 EPWLEISKKGLQLEGLNF---DRQGQLFLLDVFEGNIFKINPETKEI-------------KRPFVSHKANPAAIKIHKDG   98 (333)
T ss_dssp             EEEEEEESSCCCEEEEEE---CTTSCEEEEETTTCEEEEECTTTCCE-------------EEEEECSSSSEEEEEECTTS
T ss_pred             ceeEEEeccCccccCcEE---CCCCCEEEEECCCCEEEEEeCCCCcE-------------EEEeeCCCCCcceEEECCCC
Confidence            334445566667788888   89999888888899999999876532             11112456789999999999


Q ss_pred             CEEEEEeCC----CcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeC------CCcEEEEeCCCCCCCCC
Q 010390          121 TNILTASGD----QTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSR------DGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       121 ~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~  188 (512)
                      +++++...+    +.|.+||..+++....+.  .+...+.+++++|++ .++++...      .+.|..+|..+++..  
T Consensus        99 ~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~--  175 (333)
T 2dg1_A           99 RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT--  175 (333)
T ss_dssp             CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE--
T ss_pred             cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE--
Confidence            888877666    689999998876543332  244579999999987 66666553      245555554432210  


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCcccc
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESS  267 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~  267 (512)
                                                .+......+..++|+|+++.++++...++.|.+||+.+ +........ ..  .
T Consensus       176 --------------------------~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~-~~--~  226 (333)
T 2dg1_A          176 --------------------------PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA-TI--P  226 (333)
T ss_dssp             --------------------------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE-EE--E
T ss_pred             --------------------------EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc-eE--E
Confidence                                      01111235788999999998877666688999999864 222111000 00  0


Q ss_pred             ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeecee----ceeEEEEEECCCCCEEEEecCC
Q 010390          268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI----ESFYVKSEICPNASHILSGSSD  341 (512)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~g~~d  341 (512)
                      .....+ ..+..++++++|+++++...++.|.+||..   ...+..+.....    ...+..++|+++++.|+.++.+
T Consensus       227 ~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~---g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          227 YYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR---GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT---SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC---CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            001111 356789999999988887788999999973   223333332211    0145678999998777655554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.64  E-value=7.5e-14  Score=125.19  Aligned_cols=242  Identities=8%  Similarity=-0.035  Sum_probs=161.6

Q ss_pred             CcceEEEEEecCCCcEEE-EeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           52 PPLAVSFCKTSKNSHIFA-VSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~la-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      .+.+|++   +++|++++ +...++.|.+||..+...             ......+...+.++++.++++.+++.. ++
T Consensus        25 ~p~~i~~---~~~g~l~v~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~   87 (270)
T 1rwi_B           25 SPSGVAV---DSAGNVYVTSEGMYGRVVKLATGSTGT-------------TVLPFNGLYQPQGLAVDGAGTVYVTDF-NN   87 (270)
T ss_dssp             CEEEEEE---CTTCCEEEEECSSSCEEEEECC------------------EECCCCSCCSCCCEEECTTCCEEEEET-TT
T ss_pred             CccceEE---CCCCCEEEEccCCCCcEEEecCCCccc-------------ceEeeCCcCCcceeEECCCCCEEEEcC-CC
Confidence            5667877   99999777 547788999998755421             111123335678899999998666555 88


Q ss_pred             cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390          131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS  210 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (512)
                      .|.+||................+.++++.+++ +++++...++.|.+|+..+.....                       
T Consensus        88 ~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~-----------------------  143 (270)
T 1rwi_B           88 RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTV-----------------------  143 (270)
T ss_dssp             EEEEECTTCSCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEE-----------------------
T ss_pred             EEEEEeCCCceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEe-----------------------
Confidence            99999987654432222233578999999987 777777778899999754322110                       


Q ss_pred             ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEE
Q 010390          211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT  290 (512)
Q Consensus       211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  290 (512)
                          ........+.++++++++..+++ ...++.|.+||.........           .......+..++++++|.+++
T Consensus       144 ----~~~~~~~~p~~i~~~~~g~l~v~-~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~p~~i~~d~~g~l~v  207 (270)
T 1rwi_B          144 ----LPFTGLNDPDGVAVDNSGNVYVT-DTDNNRVVKLEAESNNQVVL-----------PFTDITAPWGIAVDEAGTVYV  207 (270)
T ss_dssp             ----CCCCSCCSCCCEEECTTCCEEEE-EGGGTEEEEECTTTCCEEEC-----------CCSSCCSEEEEEECTTCCEEE
T ss_pred             ----eccccCCCceeEEEeCCCCEEEE-ECCCCEEEEEecCCCceEee-----------cccCCCCceEEEECCCCCEEE
Confidence                00111235678999999884444 54578999999886554321           111124578999999997777


Q ss_pred             EEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       291 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      +...++.|.+||......   ..... .....+..++++++|+++++...++.|+++++...+.
T Consensus       208 ~~~~~~~v~~~~~~~~~~---~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          208 TEHNTNQVVKLLAGSTTS---TVLPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EETTTSCEEEECTTCSCC---EECCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             EECCCCcEEEEcCCCCcc---eeecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            777788999999754221   11111 1113467799999999888888899999999876543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.63  E-value=2.4e-13  Score=133.52  Aligned_cols=289  Identities=7%  Similarity=0.029  Sum_probs=185.7

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC--C
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAE--K  139 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~--~  139 (512)
                      .|.+.++++...++.|.++|..+++.             +.++. ....+..+.|+||++++++++.|+.|.+||+.  +
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v-------------~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t  229 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEI-------------KTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE  229 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCE-------------EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeE-------------EEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence            34455777778899999999987643             33333 23467799999999999999999999999996  7


Q ss_pred             CeeeecccCcCCCEEEEEee----CCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390          140 KKCTGALMGHTGSIKSLCSH----PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR  215 (512)
Q Consensus       140 ~~~~~~~~~h~~~v~~l~~~----~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (512)
                      ++.+..+.... ....++|+    |++...+++...++.|.++|..+.+..........                 ....
T Consensus       230 ~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~-----------------~~~~  291 (567)
T 1qks_A          230 PTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM-----------------TYDE  291 (567)
T ss_dssp             CCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE-----------------CTTT
T ss_pred             CcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccc-----------------cccc
Confidence            78777776533 46789999    68844455555669999999876554332111000                 0000


Q ss_pred             cccc-cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-
Q 010390          216 RKAA-SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-  293 (512)
Q Consensus       216 ~~~~-~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  293 (512)
                      ...| ...+..+..++++..+++.-..+|.|.++|....+.....          ..........+.|+|++++++++. 
T Consensus       292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~----------~i~~~~~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT----------EISAERFLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE----------EEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceee----------eeeccccccCceECCCCCEEEEEeC
Confidence            0011 1257788888888877777767899999998765432211          111223466789999999987766 


Q ss_pred             cCCeEEEEEcccCCCCceEeeee---ceeceeEEEEEECCCCCEE-EEec-CCCCEEEEecCCCC------CCCceeccc
Q 010390          294 MDHRIYLYNVLQLDKGPIQHFSG---CRIESFYVKSEICPNASHI-LSGS-SDGNAYVWQVNKPQ------ADPIKLKSH  362 (512)
Q Consensus       294 ~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l-~~g~-~dg~i~iw~~~~~~------~~~~~~~~h  362 (512)
                      .++.|.++|+.+.+.  ...+.-   ..+...-.. -++|++..+ +++. .++.|.++|....+      ..+..+...
T Consensus       362 ~sn~V~ViD~~t~kl--~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~  438 (567)
T 1qks_A          362 ARNKLVVIDTKEGKL--VAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL  438 (567)
T ss_dssp             GGTEEEEEETTTTEE--EEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             CCCeEEEEECCCCcE--EEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence            578999999876432  222221   111100111 257875544 4443 46889999998732      112333333


Q ss_pred             cCCeEEEEeCCCCCCeEEEEeC-------CCcEEEEeCCCC
Q 010390          363 DGEVTAVNWCPNEAGKIVTSSD-------DYTVRLWSLENS  396 (512)
Q Consensus       363 ~~~v~~v~~~~~~~~~l~s~~~-------dg~i~vwd~~~~  396 (512)
                      ...-..+..+|++ .+|.....       .+.|.++|+.+.
T Consensus       439 g~g~~~i~~~p~~-~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          439 GGGSLFIKTHPNS-QYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CSCCCCEECCTTC-SEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCCCEEEEeCCCC-CeEEEecCCCCCcccCceEEEEECCcc
Confidence            3333457789999 56665442       359999999876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.63  E-value=2.8e-12  Score=116.74  Aligned_cols=281  Identities=9%  Similarity=0.012  Sum_probs=185.2

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      ....+.+|.+   .++|+++++...++.|.+||.. +...            ...+..+...+.++++.+++...++...
T Consensus        18 ~~~~p~~i~~---d~~g~l~v~~~~~~~v~~~~~~-~~~~------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~   81 (300)
T 2qc5_A           18 PDSGPYGITS---SEDGKVWFTQHKANKISSLDQS-GRIK------------EFEVPTPDAKVMCLIVSSLGDIWFTENG   81 (300)
T ss_dssp             TTCCEEEEEE---CTTSCEEEEETTTTEEEEECTT-SCEE------------EEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred             CCCCcceeeE---CCCCCEEEEcCCCCeEEEECCC-CceE------------EEECCCCCCcceeEEECCCCCEEEEecC
Confidence            3456778888   9999988887778999999976 3210            1112234467999999999987777766


Q ss_pred             CCcEEEEeCCCCeeee-cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          129 DQTIKIWDAEKKKCTG-ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      ++.|..||.. ++... .+......+.++++.+++ .++++...++.|..+|.. ++... .                  
T Consensus        82 ~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~-~------------------  139 (300)
T 2qc5_A           82 ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYE-Y------------------  139 (300)
T ss_dssp             TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEE-E------------------
T ss_pred             CCeEEEECCC-CCeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEE-c------------------
Confidence            7889999987 54432 222234678999999877 777777667889999876 32110 0                  


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV  287 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (512)
                             ........+.++++.+++..+++ ...++.|..+|. +++... .         ........+..+++++++.
T Consensus       140 -------~~~~~~~~~~~i~~d~~g~l~v~-~~~~~~i~~~~~-~g~~~~-~---------~~~~~~~~~~~i~~d~~g~  200 (300)
T 2qc5_A          140 -------DLPNKGSYPAFITLGSDNALWFT-ENQNNSIGRITN-TGKLEE-Y---------PLPTNAAAPVGITSGNDGA  200 (300)
T ss_dssp             -------ECSSTTCCEEEEEECTTSSEEEE-ETTTTEEEEECT-TCCEEE-E---------ECSSTTCCEEEEEECTTSS
T ss_pred             -------cCCCCCCCceeEEECCCCCEEEE-ecCCCeEEEECC-CCcEEE-e---------eCCCCCCCcceEEECCCCC
Confidence                   01112346789999999985444 445788999998 433322 1         1112234578999999998


Q ss_pred             EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeE
Q 010390          288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVT  367 (512)
Q Consensus       288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~  367 (512)
                      +.++....+.|.+||. ..   ....+........+..++++++|++.++...++.|..|+.. +......+......+.
T Consensus       201 l~v~~~~~~~i~~~~~-~g---~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~  275 (300)
T 2qc5_A          201 LWFVEIMGNKIGRITT-TG---EISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPH  275 (300)
T ss_dssp             EEEEETTTTEEEEECT-TC---CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCC
T ss_pred             EEEEccCCCEEEEEcC-CC---cEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccc
Confidence            7777667788999997 21   12222111122346779999999977777667889999983 3321112222345688


Q ss_pred             EEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          368 AVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      ++++.+++ .++++.. . .|..+|.+
T Consensus       276 ~i~~~~~g-~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          276 GITFGKDG-SVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             CEEECTTS-CEEEECS-S-EEEEEEEC
T ss_pred             eeEeCCCC-CEEEEcc-C-ceEEeCCC
Confidence            99999998 6665554 4 67666653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.63  E-value=1.5e-14  Score=147.90  Aligned_cols=248  Identities=8%  Similarity=-0.089  Sum_probs=155.3

Q ss_pred             CccCCcceEEEEEecCCCcEEEE-----eeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAV-----SDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~lat-----g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      +|...+.+++|   ||||++||.     |+.+..|++||+.+++...           ...+...  ....++|+|||+.
T Consensus       118 ~~~~~~~~~~~---SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----------~~~~~~~--~~~~~~wspDg~~  181 (695)
T 2bkl_A          118 DGTVSLGTWAV---SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----------VDVIEGG--KYATPKWTPDSKG  181 (695)
T ss_dssp             SSCEEEEEEEE---CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----------SCCBSCC--TTCCCEECTTSSE
T ss_pred             CCCEEEEEEEE---CCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----------CcccCcc--cccceEEecCCCE
Confidence            45545556666   999999994     4455789999998875310           0011111  1157899999999


Q ss_pred             EEEEeCCCc-------------EEEEeCCCCe----eeecccCcCCCEEEEEeeCCCCCeEEEEeCCC----cEEEEeCC
Q 010390          123 ILTASGDQT-------------IKIWDAEKKK----CTGALMGHTGSIKSLCSHPTNSDILVSGSRDG----SFAIWDLR  181 (512)
Q Consensus       123 l~s~~~dg~-------------i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~  181 (512)
                      |+.++.|..             |++|++.+++    ++.....|...+.++.|+|++ ++|+.++.++    .|.+|+..
T Consensus       182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~  260 (695)
T 2bkl_A          182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPG  260 (695)
T ss_dssp             EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTT
T ss_pred             EEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCC
Confidence            999988776             9999998875    333444566688999999999 6666555544    56666543


Q ss_pred             CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee---cCCeEEEEeccCccce-e
Q 010390          182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA---VNSIVKFWDTRNLKAQ-I  257 (512)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~---~dg~i~iwd~~~~~~~-~  257 (512)
                      ++..                            ..+..+...+....+ +++. +++.+.   .++.|.+||+.++... .
T Consensus       261 ~~~~----------------------------~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          261 EKDF----------------------------RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             CSSC----------------------------EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             CCce----------------------------EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCC
Confidence            2211                            112222334455555 6676 655443   2588999999876421 0


Q ss_pred             cccCCCcccccccccc-ccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390          258 TQAWPHAESSSAKETR-LHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL  336 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  336 (512)
                      ..         ....+ ...+..++++ ++.++++...|+..++|.+.. .......+... ....+..++++|+++.++
T Consensus       311 ~~---------l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~  378 (695)
T 2bkl_A          311 KE---------IVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL-KGKPVRTVQLP-GVGAASNLMGLEDLDDAY  378 (695)
T ss_dssp             EE---------EECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET-TCCEEEECCCS-SSSEECCCBSCTTCSEEE
T ss_pred             eE---------EecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-CCCeeEEecCC-CCeEEEEeecCCCCCEEE
Confidence            10         11111 3347778888 677888888999888887642 12222222221 123355578889988776


Q ss_pred             ----EecCCCCEEEEecCCCCC
Q 010390          337 ----SGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       337 ----~g~~dg~i~iw~~~~~~~  354 (512)
                          +....+.|++||+.+++.
T Consensus       379 ~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          379 YVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEcCCCCCCEEEEEECCCCcE
Confidence                333457899999987653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.62  E-value=9.4e-14  Score=129.58  Aligned_cols=223  Identities=12%  Similarity=0.100  Sum_probs=143.3

Q ss_pred             CcceEEEEEecCCCcEEEEeeCC---C--cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDED---G--YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA  126 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~  126 (512)
                      .+.+++|   ||||++||.++.+   +  .|.+||+.+++.              ..+..+.. +..++|+||++.|+.+
T Consensus        60 ~~~~~~~---SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~--------------~~l~~~~~-~~~~~wspdg~~l~~~  121 (347)
T 2gop_A           60 NATMPRI---SPDGKKIAFMRANEEKKVSEIWVADLETLSS--------------KKILEAKN-IRSLEWNEDSRKLLIV  121 (347)
T ss_dssp             SCEEEEE---CTTSSEEEEEEEETTTTEEEEEEEETTTTEE--------------EEEEEESE-EEEEEECTTSSEEEEE
T ss_pred             cCCCeEE---CCCCCEEEEEEeccCCCcceEEEEECCCCce--------------EEEEcCCC-ccceeECCCCCEEEEE
Confidence            3455555   9999999987644   3  377788766532              12222334 9999999999999977


Q ss_pred             eCC---------------------------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC------
Q 010390          127 SGD---------------------------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG------  173 (512)
Q Consensus       127 ~~d---------------------------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg------  173 (512)
                      +.+                           ..|.+||+.+++.+..+.. . .+..+.|+|++  +++++..++      
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~  197 (347)
T 2gop_A          122 GFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYF  197 (347)
T ss_dssp             EECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSS
T ss_pred             EccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEeccccccccc
Confidence            632                           5799999998877445544 3 78899999987  666665542      


Q ss_pred             -cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-------CeE
Q 010390          174 -SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-------SIV  245 (512)
Q Consensus       174 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-------g~i  245 (512)
                       ...+|.+.+++. .                           .+..+ ..+..+  +|+|+.+++.+..+       ..|
T Consensus       198 ~~~~l~~~d~~~~-~---------------------------~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l  246 (347)
T 2gop_A          198 KFWDIYIWEDGKE-E---------------------------KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL  246 (347)
T ss_dssp             CCEEEEEEETTEE-E---------------------------EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred             ccccEEEeCCCce-E---------------------------EeccC-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence             345554432110 0                           11112 234444  89999888766332       478


Q ss_pred             EEEeccCccceecccCCCccccccccccccCeeE-EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEE
Q 010390          246 KFWDTRNLKAQITQAWPHAESSSAKETRLHGISS-LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYV  324 (512)
Q Consensus       246 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  324 (512)
                      .+||  +++...           ....+...+.. +.|+ ++ ++++++.++.+++| +.+  ... ..+...  ...+.
T Consensus       247 ~~~d--~~~~~~-----------l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~--g~~-~~~~~~--~~~v~  305 (347)
T 2gop_A          247 YIYD--GKEVMG-----------ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD--GEI-KPIAKG--RHWIM  305 (347)
T ss_dssp             EEEC--SSCEEE-----------SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES--SSE-EEEECS--SSEEE
T ss_pred             EEEC--CCceEe-----------ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC--Cce-EEEecC--CCeEE
Confidence            8888  333221           12233455775 8999 88 88899999999999 862  222 222222  34577


Q ss_pred             EEEECCCCCEEEEecCCCCE-EEEecC
Q 010390          325 KSEICPNASHILSGSSDGNA-YVWQVN  350 (512)
Q Consensus       325 ~~~~s~~~~~l~~g~~dg~i-~iw~~~  350 (512)
                      .++|+|  .++++++.++.. .||.++
T Consensus       306 ~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          306 GFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             eeeeeC--cEEEEEcCCCChHHheEeC
Confidence            789999  677777766654 777765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=1.8e-13  Score=124.51  Aligned_cols=238  Identities=8%  Similarity=0.008  Sum_probs=159.1

Q ss_pred             ccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           49 EETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      +.....++.|   +|+|+ +++++..++.|.+||..++               ...+..+...+.+++++++++++++..
T Consensus        26 ~~~~~eg~~~---d~~g~~l~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~l~~~~dg~l~v~~~   87 (296)
T 3e5z_A           26 GFTWTEGPVY---VPARSAVIFSDVRQNRTWAWSDDGQ---------------LSPEMHPSHHQNGHCLNKQGHLIACSH   87 (296)
T ss_dssp             CCSSEEEEEE---EGGGTEEEEEEGGGTEEEEEETTSC---------------EEEEESSCSSEEEEEECTTCCEEEEET
T ss_pred             CCccccCCeE---eCCCCEEEEEeCCCCEEEEEECCCC---------------eEEEECCCCCcceeeECCCCcEEEEec
Confidence            4455678888   99998 8888888999999998754               233445667899999999999888777


Q ss_pred             CCCcEEEEeCCCCeeeecccCc----CCCEEEEEeeCCCCCeEEEEeC-----------------CCcEEEEeCCCCCCC
Q 010390          128 GDQTIKIWDAEKKKCTGALMGH----TGSIKSLCSHPTNSDILVSGSR-----------------DGSFAIWDLRCKSSP  186 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~-----------------dg~i~vwd~~~~~~~  186 (512)
                      .++.|.+||..+++........    ...++.+++.|++ +++++.+.                 .+.|..++.. +.. 
T Consensus        88 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-  164 (296)
T 3e5z_A           88 GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-  164 (296)
T ss_dssp             TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-
T ss_pred             CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCE-
Confidence            7789999999888754332211    2346789999988 77776321                 2344444433 110 


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc-Cccc-eecccCCCc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR-NLKA-QITQAWPHA  264 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~-~~~~-~~~~~~~~~  264 (512)
                                                 .....+......++|+|+++.+ ++...++.|.+||+. ++.. ....     
T Consensus       165 ---------------------------~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~-----  211 (296)
T 3e5z_A          165 ---------------------------SAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGV-----  211 (296)
T ss_dssp             ---------------------------EEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEE-----
T ss_pred             ---------------------------EEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCe-----
Confidence                                       0112233457889999999998 667678999999987 3332 1110     


Q ss_pred             cccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE-CCCCCEEEEecCCCC
Q 010390          265 ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI-CPNASHILSGSSDGN  343 (512)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~dg~  343 (512)
                          ........+..++++++|+++++.  ++.|.+||..   ...+..+....  . +.+++| +++++.|++++.++ 
T Consensus       212 ----~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~---g~~~~~~~~~~--~-~~~~~f~~~d~~~L~v~t~~~-  278 (296)
T 3e5z_A          212 ----HFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD---GDELGRVLTPQ--T-TSNLCFGGPEGRTLYMTVSTE-  278 (296)
T ss_dssp             ----EECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT---SCEEEEEECSS--C-CCEEEEESTTSCEEEEEETTE-
T ss_pred             ----EeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC---CCEEEEEECCC--C-ceeEEEECCCCCEEEEEcCCe-
Confidence                011123456789999999866655  8899999974   22333333322  2 566888 68999888888764 


Q ss_pred             EEEEecCCCC
Q 010390          344 AYVWQVNKPQ  353 (512)
Q Consensus       344 i~iw~~~~~~  353 (512)
                      +.-++..+..
T Consensus       279 l~~~~~~~~~  288 (296)
T 3e5z_A          279 FWSIETNVRG  288 (296)
T ss_dssp             EEEEECSCCB
T ss_pred             EEEEEccccc
Confidence            5555555443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.59  E-value=1.7e-13  Score=126.10  Aligned_cols=284  Identities=11%  Similarity=-0.017  Sum_probs=178.9

Q ss_pred             cCCCcEEEEeeC-----CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe---------
Q 010390           62 SKNSHIFAVSDE-----DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS---------  127 (512)
Q Consensus        62 s~~~~~latg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~---------  127 (512)
                      .|+++.+.+...     ++.|.++|..+.+.             +.++..-..+ . ++++|||++|+.+.         
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G  105 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARG  105 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEE
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------------EEEEECCCCC-c-EEECCCCCEEEEEcccccccccC
Confidence            799998888765     67999999987643             4444444444 4 99999999988765         


Q ss_pred             -CCCcEEEEeCCCCeeeecccCcC-------CCEEEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCCccccceeee
Q 010390          128 -GDQTIKIWDAEKKKCTGALMGHT-------GSIKSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       128 -~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                       .++.|.+||..+++.+..+.-..       .....+.|+|++ ++++.+..  ++.|.++|+.+.+.......      
T Consensus       106 ~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv~tI~v------  178 (386)
T 3sjl_D          106 ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDV------  178 (386)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEEC------
T ss_pred             CCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEEEEEEC------
Confidence             36789999999999888774221       245568999999 66666543  68999999987654332110      


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecC-CEEEEEeecCCeEEEEeccC-ccceecccCCCcccccccccccc
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE-VSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                            . .  +....|.+ ..+++ .+.||.+.+.++.. ++...... .      .+.....
T Consensus       179 ----------------------~-g--~~~~~P~g~~~~~~-~~~DG~~~~v~~~~~g~v~~~~~-~------~~~~~~~  225 (386)
T 3sjl_D          179 ----------------------P-D--CYHIFPTAPDTFFM-HCRDGSLAKVAFGTEGTPEITHT-E------VFHPEDE  225 (386)
T ss_dssp             ----------------------C-S--EEEEEEEETTEEEE-EETTSCEEEEECCSSSCCEEEEC-C------CCSCTTS
T ss_pred             ----------------------C-C--cceeecCCCceeEE-ECCCCCEEEEECCCCCeEEEeec-c------eeccccc
Confidence                                  0 0  11223433 34443 44688888888876 44321110 0      0111111


Q ss_pred             Ce-eEEEe-CCCCCEEEEEecCCeEEEEEcccCCCCceEeee---------eceeceeEEEEEECCCCCEEEEecC----
Q 010390          276 GI-SSLSQ-DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS---------GCRIESFYVKSEICPNASHILSGSS----  340 (512)
Q Consensus       276 ~i-~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~s~~~~~l~~g~~----  340 (512)
                      .+ ....| .++|++++ .+.+|.|.+.|+............         +... .....++++++++.++....    
T Consensus       226 ~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p-~g~q~~a~~~~~~~lyV~~~~~~~  303 (386)
T 3sjl_D          226 FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP-GGWQQVAYHRALDRIYLLVDQRDE  303 (386)
T ss_dssp             CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE-CSSSCEEEETTTTEEEEEEEECCT
T ss_pred             cccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC-CCcceeeECCCCCeEEEEeccccc
Confidence            12 12355 36776655 445899999998654322222221         0000 11123677899888876542    


Q ss_pred             ------CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEE-EeCCCcEEEEeCCCCcccccccC
Q 010390          341 ------DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT-SSDDYTVRLWSLENSRCSSMRSP  404 (512)
Q Consensus       341 ------dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~  404 (512)
                            .+.|.++|+.+.+.......+  ..+.+|++++|+..+|++ ...++.|.++|..+++.+.....
T Consensus       304 ~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~  372 (386)
T 3sjl_D          304 WRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ  372 (386)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             cccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence                  246999999988764333333  368899999999435555 45689999999999998876543

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=3.6e-12  Score=116.98  Aligned_cols=247  Identities=9%  Similarity=0.026  Sum_probs=162.0

Q ss_pred             CCCcEEEEEEecCCCEEEE-------EeCCCcEEEEeCCCCeeeeccc----CcCCCEEEEEeeCC-CCCeEEEEeCCCc
Q 010390          107 HQNAIFDLCWIKEDTNILT-------ASGDQTIKIWDAEKKKCTGALM----GHTGSIKSLCSHPT-NSDILVSGSRDGS  174 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~-~~~~l~s~~~dg~  174 (512)
                      .-....+++|++++..+++       +..++.|.+||..+++......    ++...+.++++.++ + +++++.. ++.
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g-~l~v~~~-~~~   93 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADM-RLG   93 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS-EEEEEET-TTE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC-cEEEEEC-CCC
Confidence            3456688999999988887       6778999999988876543221    24567899999998 5 5555544 447


Q ss_pred             EEEEeCCCCCCCCC-ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-----------
Q 010390          175 FAIWDLRCKSSPKS-NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-----------  242 (512)
Q Consensus       175 i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-----------  242 (512)
                      |.+||.. ++.... ...                       ........+.++++++++..+++.. .+           
T Consensus        94 l~~~d~~-g~~~~~~~~~-----------------------~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~~~~~~~~~~  148 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKD-----------------------SEGRRMQGCNDCAFDYEGNLWITAP-AGEVAPADYTRSM  148 (314)
T ss_dssp             EEEEETT-SCEEECCSBC-----------------------TTSCBCBCCCEEEECTTSCEEEEEC-BCBCTTSCCCBTT
T ss_pred             EEEEeCC-CCEEEEEecc-----------------------CCCccccCCcCEEECCCCCEEEEec-Ccccccccccccc
Confidence            8899987 432110 000                       0001123578999999998776643 33           


Q ss_pred             ----CeEEEEeccCccceecccCCCccccccccccccCeeEEEeC----CCCCEEEEE-ecCCeEEEEEccc-CCCCceE
Q 010390          243 ----SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD----SNGVFLTAS-CMDHRIYLYNVLQ-LDKGPIQ  312 (512)
Q Consensus       243 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~  312 (512)
                          +.|..||.. ++...            ..........++++    ++++.|+++ ..++.|.+||+.. .......
T Consensus       149 ~~~~~~l~~~~~~-g~~~~------------~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~  215 (314)
T 1pjx_A          149 QEKFGSIYCFTTD-GQMIQ------------VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK  215 (314)
T ss_dssp             SSSCEEEEEECTT-SCEEE------------EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE
T ss_pred             cCCCCeEEEECCC-CCEEE------------eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccce
Confidence                567777765 33211            11222346788999    999766655 4678999999752 1111111


Q ss_pred             eeeecee-c-eeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCC-eEEEEeCCCcEE
Q 010390          313 HFSGCRI-E-SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAG-KIVTSSDDYTVR  389 (512)
Q Consensus       313 ~~~~~~~-~-~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~i~  389 (512)
                      .+..... . .....++++++|+++++...++.|.+||..+++. ...+..+...+.+++|++++ . ++++...++.|.
T Consensus       216 ~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~i~~~~dg-~~l~v~~~~~~~l~  293 (314)
T 1pjx_A          216 VWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQT-KTIFVTEHENNAVW  293 (314)
T ss_dssp             EEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTS-SEEEEEETTTTEEE
T ss_pred             EEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE-eEEEeCCCCCceeEEECCCC-CEEEEEeCCCCeEE
Confidence            1111111 1 3456789999999888877788899999875554 34555566789999999999 6 556666778999


Q ss_pred             EEeCCC
Q 010390          390 LWSLEN  395 (512)
Q Consensus       390 vwd~~~  395 (512)
                      .|++..
T Consensus       294 ~~~~~~  299 (314)
T 1pjx_A          294 KFEWQR  299 (314)
T ss_dssp             EEECSS
T ss_pred             EEeCCC
Confidence            999875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.56  E-value=1.4e-11  Score=111.99  Aligned_cols=244  Identities=9%  Similarity=-0.049  Sum_probs=166.7

Q ss_pred             cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC
Q 010390          106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA-LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS  184 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  184 (512)
                      .+...+.++++.++|..+++...++.|.+||.. ++.... +..+...+.++++.+++ .++++...++.|..||.. +.
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~   88 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK-GI   88 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC-Cc
Confidence            455789999999999877776668899999988 543322 22345679999999987 777777667889999875 21


Q ss_pred             CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390          185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA  264 (512)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~  264 (512)
                      . ...                         ........+.++++.+++..+++ ...++.|..||. +++.....     
T Consensus        89 ~-~~~-------------------------~~~~~~~~~~~i~~~~~g~l~v~-~~~~~~i~~~d~-~g~~~~~~-----  135 (299)
T 2z2n_A           89 I-KEY-------------------------TLPNPDSAPYGITEGPNGDIWFT-EMNGNRIGRITD-DGKIREYE-----  135 (299)
T ss_dssp             E-EEE-------------------------ECSSTTCCEEEEEECTTSCEEEE-ETTTTEEEEECT-TCCEEEEE-----
T ss_pred             E-EEE-------------------------eCCCcCCCceeeEECCCCCEEEE-ecCCceEEEECC-CCCEEEec-----
Confidence            0 000                         00112346889999998876665 435789999998 44332111     


Q ss_pred             cccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390          265 ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA  344 (512)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  344 (512)
                           .......+..+++++++.++++...++.|..||. +..   ...+........+..++++++++++++...++.|
T Consensus       136 -----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  206 (299)
T 2z2n_A          136 -----LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKI  206 (299)
T ss_dssp             -----CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             -----CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCCEEEEccCCceE
Confidence                 1112345889999999988777767789999997 322   2222111112346679999999987777778889


Q ss_pred             EEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          345 YVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       345 ~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      .+|+. ++.........+...+.++++++++ .++++...++.|..||. +++
T Consensus       207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~  256 (299)
T 2z2n_A          207 GRITT-SGEITEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTS-NNI  256 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEET-TTE
T ss_pred             EEECC-CCcEEEEECCCCCCCceeEEECCCC-CEEEeccCCceEEEECC-CCc
Confidence            99998 5443212223345679999999998 67777667889999998 444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=9.6e-13  Score=117.69  Aligned_cols=220  Identities=10%  Similarity=0.015  Sum_probs=154.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      .++.|++++.|+.|.+||.++++.+..+..+. ..+.++.+.|++ ++++  +.++.|..||. +++.+..         
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~---------   70 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWN---------   70 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEE---------
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEE---------
Confidence            46789999999999999999999999998765 478899999988 7777  34678999998 5543221         


Q ss_pred             cccccccccccccccceecccc-cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAA-SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                        +..+ ...+.++.+.++++.+++.+..++.|..+|. +++.+.......     ....+...
T Consensus        71 ------------------~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~-----~~~~~~~~  126 (276)
T 3no2_A           71 ------------------IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFET-----GIERPHAQ  126 (276)
T ss_dssp             ------------------EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECC-----SCSSGGGS
T ss_pred             ------------------EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccC-----CCCccccc
Confidence                              1111 2357788999999998875533677887876 455443322111     01112234


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                      ...+...++|+++++...++.|..||.. +  +.+..+...   .....+...++|+.++++..++.|..+|..+++.. 
T Consensus       127 ~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G--~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~-  199 (276)
T 3no2_A          127 FRQINKNKKGNYLVPLFATSEVREIAPN-G--QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV-  199 (276)
T ss_dssp             CSCCEECTTSCEEEEETTTTEEEEECTT-S--CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE-
T ss_pred             ccCceECCCCCEEEEecCCCEEEEECCC-C--CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE-
Confidence            5566789999999999999999999975 3  333343332   12334677899999999988889999999877663 


Q ss_pred             ceecccc------CCeEEEEeCCCCCCeEEEEe
Q 010390          357 IKLKSHD------GEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       357 ~~~~~h~------~~v~~v~~~~~~~~~l~s~~  383 (512)
                      ..+..+.      ..+..++..+++ .++++..
T Consensus       200 w~~~~~~~~~~~l~~~~~~~~~~~G-~i~v~~~  231 (276)
T 3no2_A          200 RRVNANDIEGVQLFFVAQLFPLQNG-GLYICNW  231 (276)
T ss_dssp             EEEEGGGSBSCCCSEEEEEEECTTS-CEEEEEE
T ss_pred             EEecCCCCCCccccccccceEcCCC-CEEEEec
Confidence            3343221      237888899998 7777763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.56  E-value=4.3e-13  Score=138.14  Aligned_cols=285  Identities=12%  Similarity=-0.014  Sum_probs=169.8

Q ss_pred             cCCCcEEEEeeCCCc---EEEEECCC-----CCCcccccccccccccee----ccccCCCcEEEEEEecCCCEEEEEeCC
Q 010390           62 SKNSHIFAVSDEDGY---VSLFDSRR-----KLPSFACHRENAEKARIS----DWVAHQNAIFDLCWIKEDTNILTASGD  129 (512)
Q Consensus        62 s~~~~~latg~~dg~---i~iwd~~~-----~~~~~~~~~~~~~~~~~~----~~~~h~~~V~~l~~s~~~~~l~s~~~d  129 (512)
                      +|+|++++....++.   -.||....     +..           ..+.    .-.+|...+..++|||||++|+.+..+
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~  183 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKG-----------RVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQD  183 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCC-----------EEEECGGGCC----EEEEEEEECTTSSEEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCC-----------EEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcC
Confidence            589998887654433   55565432     211           1111    112344578899999999999976543


Q ss_pred             -----CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc--------------EEEEeCCCCCCCCCcc
Q 010390          130 -----QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS--------------FAIWDLRCKSSPKSNC  190 (512)
Q Consensus       130 -----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--------------i~vwd~~~~~~~~~~~  190 (512)
                           ..|++||+.+++.+.... +...+..++|+|+  +.|+.++.|+.              |++|++.++.....  
T Consensus       184 ~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD--~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--  258 (741)
T 1yr2_A          184 GGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN--DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ--  258 (741)
T ss_dssp             TTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT--SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE--
T ss_pred             CCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC--CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE--
Confidence                 469999999998754311 2222357889998  45555555443              88888765431100  


Q ss_pred             ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec----CCeEEEEeccCccce-ecccCCCcc
Q 010390          191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV----NSIVKFWDTRNLKAQ-ITQAWPHAE  265 (512)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~----dg~i~iwd~~~~~~~-~~~~~~~~~  265 (512)
                                           .+.....+...+..+.|+|+|+.++++...    ...|++||+.++... ..       
T Consensus       259 ---------------------lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-------  310 (741)
T 1yr2_A          259 ---------------------PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT-------  310 (741)
T ss_dssp             ---------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE-------
T ss_pred             ---------------------EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE-------
Confidence                                 000111222357899999999998886642    348999999876211 11       


Q ss_pred             ccccccccccCeeEEEeCCCCCEEEEEec----CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390          266 SSSAKETRLHGISSLSQDSNGVFLTASCM----DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD  341 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  341 (512)
                         .+..+...+... ++++|..|+..+.    ++.|.+||+.... .....+..+. ...+..++++ ++.++++...|
T Consensus       311 ---~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~d  383 (741)
T 1yr2_A          311 ---ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPES-KDNLESVGIA-GNRLFASYIHD  383 (741)
T ss_dssp             ---EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCC-SSEEEEEEEE-BTEEEEEEEET
T ss_pred             ---EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCC-CCeEEEEEEE-CCEEEEEEEEC
Confidence               122222233333 3488888887765    3569999986532 2222222222 1234456666 56777888888


Q ss_pred             CCEEEEecC-CCCCCCceecc-ccCCeEEEEeCCCCCCeEEEEe---CCCcEEEEeCCCCcc
Q 010390          342 GNAYVWQVN-KPQADPIKLKS-HDGEVTAVNWCPNEAGKIVTSS---DDYTVRLWSLENSRC  398 (512)
Q Consensus       342 g~i~iw~~~-~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~  398 (512)
                      +..+||.+. ++.. ...+.. +.+.|..+.++|++..++++.+   ..+.|++||+.+++.
T Consensus       384 g~~~l~~~~~~g~~-~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          384 AKSQVLAFDLDGKP-AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             TEEEEEEEETTSCE-EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             CEEEEEEEeCCCCc-eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            887777655 2222 233333 3667899999999844444433   458999999988774

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.54  E-value=2.1e-12  Score=115.48  Aligned_cols=221  Identities=10%  Similarity=-0.021  Sum_probs=152.7

Q ss_pred             CCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 010390           63 KNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK  141 (512)
Q Consensus        63 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  141 (512)
                      ..+++|++++.++.|.+||.++++.             +.++..+. ..+.++.++|+|+.|+  +.++.|+.||. +++
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~-------------~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~   66 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEI-------------VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR   66 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEE-------------EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeE-------------EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC
Confidence            3468999999999999999877743             55555554 4788999999999888  34778999998 899


Q ss_pred             eeecccCcC-CCEEEEEeeCCCCCeEEEEeC-CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc
Q 010390          142 CTGALMGHT-GSIKSLCSHPTNSDILVSGSR-DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA  219 (512)
Q Consensus       142 ~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (512)
                      .+..+..+. ..+.++.+.+++ +++++.+. ++.|..+|. +++.+.....         ..            ....+
T Consensus        67 ~~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~---------~~------------~~~~~  123 (276)
T 3no2_A           67 ELWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEF---------ET------------GIERP  123 (276)
T ss_dssp             EEEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEE---------CC------------SCSSG
T ss_pred             EEEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEec---------cC------------CCCcc
Confidence            888887653 478899999988 78888776 777777775 3332111100         00            00011


Q ss_pred             cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390          220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY  299 (512)
Q Consensus       220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  299 (512)
                      ......+...+++..+++ ...++.|..||.. ++.......+            ..+.++...++++.++++..++.|.
T Consensus       124 ~~~~~~v~~~~~G~~lv~-~~~~~~v~~~d~~-G~~~w~~~~~------------~~~~~~~~~~~g~~~v~~~~~~~v~  189 (276)
T 3no2_A          124 HAQFRQINKNKKGNYLVP-LFATSEVREIAPN-GQLLNSVKLS------------GTPFSSAFLDNGDCLVACGDAHCFV  189 (276)
T ss_dssp             GGSCSCCEECTTSCEEEE-ETTTTEEEEECTT-SCEEEEEECS------------SCCCEEEECTTSCEEEECBTTSEEE
T ss_pred             cccccCceECCCCCEEEE-ecCCCEEEEECCC-CCEEEEEECC------------CCccceeEcCCCCEEEEeCCCCeEE
Confidence            123445567889988876 4479999999998 7776643221            2456678889999999998888999


Q ss_pred             EEEcccCCCCceEeeeecee----ceeEEEEEECCCCCEEEEe
Q 010390          300 LYNVLQLDKGPIQHFSGCRI----ESFYVKSEICPNASHILSG  338 (512)
Q Consensus       300 i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~g  338 (512)
                      .+|..++  ..+..+.....    ...+..++..++|+.+++.
T Consensus       190 ~~d~~tG--~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          190 QLNLESN--RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EECTTTC--CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EEeCcCC--cEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            9997643  33334432211    1235567777888777765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=8.5e-12  Score=114.43  Aligned_cols=248  Identities=8%  Similarity=0.045  Sum_probs=157.1

Q ss_pred             CCcceEEEEEecCCCcEEEE-------eeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCE
Q 010390           51 TPPLAVSFCKTSKNSHIFAV-------SDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTN  122 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~lat-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~  122 (512)
                      ..+.+++|   +++|.++++       +..++.|.+||..++.....         ......++...+.+++++++ +++
T Consensus        18 ~~~~~~~~---~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---------~~~~~~~~~~~~~~i~~~~~~g~l   85 (314)
T 1pjx_A           18 PGAEGPVF---DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---------CKPEVNGYGGIPAGCQCDRDANQL   85 (314)
T ss_dssp             TTCEEEEE---CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE---------ECCEETTEECCEEEEEECSSSSEE
T ss_pred             CCccCceE---CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE---------EecccCCCCCCCceEEEecCCCcE
Confidence            34678888   899998888       67788999999766532100         00001124567999999998 654


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeec-ccC----cCCCEEEEEeeCCCCCeEEEEeCC---------------CcEEEEeCCC
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGA-LMG----HTGSIKSLCSHPTNSDILVSGSRD---------------GSFAIWDLRC  182 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~~l~s~~~d---------------g~i~vwd~~~  182 (512)
                      +++. ..+.|.+||.. ++.... ...    ....+.++++.+++ +++++...+               +.|..||.. 
T Consensus        86 ~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (314)
T 1pjx_A           86 FVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-  161 (314)
T ss_dssp             EEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred             EEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence            5444 44479999988 665433 221    12358899999987 777766554               456666543 


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe----ecCCEEEEEeecCCeEEEEecc-Ccccee
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL----KDEVSIATASAVNSIVKFWDTR-NLKAQI  257 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~g~~dg~i~iwd~~-~~~~~~  257 (512)
                      ++..                            ....+......++++    ++++.++++...++.|.+||.. ++....
T Consensus       162 g~~~----------------------------~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~  213 (314)
T 1pjx_A          162 GQMI----------------------------QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN  213 (314)
T ss_dssp             SCEE----------------------------EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred             CCEE----------------------------EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc
Confidence            2110                            001122346788999    9998777766668899999986 332110


Q ss_pred             cccCCCccccccccccc-cCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-
Q 010390          258 TQAWPHAESSSAKETRL-HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-  335 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-  335 (512)
                      .....      ....+. ..+..++++++|+++++...++.|.+||..+...  ...+...  ...+.+++++++++.| 
T Consensus       214 ~~~~~------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~--~~~~~~~--~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          214 KKVWG------HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--KMRIRCP--FEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             EEEEE------ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC--SEEEECS--SSCEEEEEECTTSSEEE
T ss_pred             ceEEE------ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcE--eEEEeCC--CCCceeEEECCCCCEEE
Confidence            00000      111121 3467899999999888877889999999763322  2222222  2456789999999955 


Q ss_pred             EEecCCCCEEEEecCCC
Q 010390          336 LSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       336 ~~g~~dg~i~iw~~~~~  352 (512)
                      ++...++.|..|++...
T Consensus       284 v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          284 VTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEETTTTEEEEEECSSC
T ss_pred             EEeCCCCeEEEEeCCCC
Confidence            45556678999998754

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.51  E-value=1.7e-12  Score=119.71  Aligned_cols=240  Identities=10%  Similarity=0.022  Sum_probs=156.6

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT  131 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~  131 (512)
                      .+..+.+   . ++++.++...++.|.+||..+++.             +.++. .......++++++++..++...++.
T Consensus        45 ~~~~i~~---~-~~~lyv~~~~~~~v~viD~~t~~~-------------~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~  106 (328)
T 3dsm_A           45 VAQSMVI---R-DGIGWIVVNNSHVIFAIDINTFKE-------------VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYR  106 (328)
T ss_dssp             CEEEEEE---E-TTEEEEEEGGGTEEEEEETTTCCE-------------EEEEE-CCSSEEEEEEEETTEEEEEEBSCSE
T ss_pred             cceEEEE---E-CCEEEEEEcCCCEEEEEECcccEE-------------EEEcC-CCCCCcEEEEeCCCeEEEEECCCCe
Confidence            3456665   3 455666666789999999987643             33332 3467889999999854444448999


Q ss_pred             EEEEeCCCCeeeecccCcC-----CCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          132 IKIWDAEKKKCTGALMGHT-----GSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       132 i~iwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      |.+||..+++....+....     .....+++ . +..++++.. .++.|.++|+.+++.....                
T Consensus       107 v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i----------------  168 (328)
T 3dsm_A          107 IFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDEL----------------  168 (328)
T ss_dssp             EEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEE----------------
T ss_pred             EEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEE----------------
Confidence            9999999998876665332     14556777 3 424555544 4889999999876432211                


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeec---------CCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV---------NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                 . .......+.++++++.++++...         .+.|.++|..+++.......          .....
T Consensus       169 -----------~-~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~----------~~g~~  226 (328)
T 3dsm_A          169 -----------T-IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF----------KLGDW  226 (328)
T ss_dssp             -----------E-CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC----------CTTCC
T ss_pred             -----------E-cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec----------CCCCC
Confidence                       0 11234678889999866654322         27899999988765433211          11135


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEEEe----cCCCCEEEEecCC
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHILSG----SSDGNAYVWQVNK  351 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g----~~dg~i~iw~~~~  351 (512)
                      ...++++|+++.|+++..  .|.+||..+........+...  ......++++| ++.++++.    ..++.|.+||.. 
T Consensus       227 p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-  301 (328)
T 3dsm_A          227 PSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-  301 (328)
T ss_dssp             CEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-
T ss_pred             ceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-
Confidence            789999999999988765  899999866443211111110  23456799999 45555665    567899999987 


Q ss_pred             CCC
Q 010390          352 PQA  354 (512)
Q Consensus       352 ~~~  354 (512)
                      ++.
T Consensus       302 g~~  304 (328)
T 3dsm_A          302 GKL  304 (328)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.49  E-value=1.7e-12  Score=121.85  Aligned_cols=285  Identities=8%  Similarity=-0.025  Sum_probs=177.4

Q ss_pred             cCCCcEEEEeeCC-----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe---------
Q 010390           62 SKNSHIFAVSDED-----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS---------  127 (512)
Q Consensus        62 s~~~~~latg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~---------  127 (512)
                      .++++.+++....     +.|.++|..+.+.             +.++..-..+  .+.++||+++|+.+.         
T Consensus        81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~v-------------v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G  145 (426)
T 3c75_H           81 APDARRVYIQDPAHFAAITQQFVIDGSTGRI-------------LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARG  145 (426)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEE-------------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEE
T ss_pred             CCCCCEEEEECCCcCCCCCeEEEEECCCCEE-------------EEEEECCCCC--ceEECCCCCEEEEEeccccccccC
Confidence            4677766666442     6999999987643             4444433445  899999999988775         


Q ss_pred             -CCCcEEEEeCCCCeeeecccCc-------CCCEEEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCCccccceeee
Q 010390          128 -GDQTIKIWDAEKKKCTGALMGH-------TGSIKSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       128 -~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                       .++.|.++|..+++.+..+.-.       ......+.|+|++ ++++.+..  ++.|.+.|+.+.+.......      
T Consensus       146 ~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv~~I~v------  218 (426)
T 3c75_H          146 KRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFDRMLDV------  218 (426)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEEC------
T ss_pred             CCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEEEEEEc------
Confidence             3678999999999888776421       1234568899998 66666653  57899999987654321100      


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC-
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG-  276 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  276 (512)
                                            . .  +....|++...+++.+.||.+.+.+..+++......  .     .......+ 
T Consensus       219 ----------------------~-g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~--~-----~~~v~~~p~  266 (426)
T 3c75_H          219 ----------------------P-D--CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT--E-----VFHTEDELL  266 (426)
T ss_dssp             ----------------------C-S--EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC--C-----CCSCTTSCB
T ss_pred             ----------------------C-C--ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee--e-----eeccCCCce
Confidence                                  0 0  123344443333334467777777774444332110  0     00000111 


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee---ce-----eceeEEEEEECCCCCEEEEecC--------
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG---CR-----IESFYVKSEICPNASHILSGSS--------  340 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~-----~~~~~~~~~~s~~~~~l~~g~~--------  340 (512)
                      ...+.+.+++..++.....+.+.+.|+..........+.-   ..     .......++++++++.+++...        
T Consensus       267 ~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk  346 (426)
T 3c75_H          267 INHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHK  346 (426)
T ss_dssp             CSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred             eeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccccc
Confidence            1235678888888777888999999985432111111100   00     0000112688999887766532        


Q ss_pred             --CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCCCcccccc
Q 010390          341 --DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       341 --dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~  402 (512)
                        ++.|.++|+.+.+.. ..+.. .....+++|+||+..++++.. .++.|.++|+.+++.+...
T Consensus       347 ~~s~~VsVID~~T~kvv-~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          347 AASRFVVVLNAETGERI-NKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             SCEEEEEEEETTTCCEE-EEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEEECCCCeEE-EEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence              357999999987763 33321 225889999999932777776 6999999999999987653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.47  E-value=1.9e-10  Score=104.54  Aligned_cols=243  Identities=5%  Similarity=-0.070  Sum_probs=164.8

Q ss_pred             CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee-cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390          107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG-ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS  185 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  185 (512)
                      ....+.++++.+++...++...++.|.+||.. ++... .+..+...+.++++.+++ .++++...++.|..||.. ++.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC-CCe
Confidence            45688999999999888877678999999987 55433 223334678999999887 777776667889999876 321


Q ss_pred             CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                      .. .                         ........+.++++.+++..+++ ...++.|..+|.. ++.....      
T Consensus        95 ~~-~-------------------------~~~~~~~~~~~i~~~~~g~l~v~-~~~~~~i~~~~~~-g~~~~~~------  140 (300)
T 2qc5_A           95 TE-Y-------------------------PLPQPDSGPYGITEGLNGDIWFT-QLNGDRIGKLTAD-GTIYEYD------  140 (300)
T ss_dssp             EE-E-------------------------ECSSTTCCEEEEEECSTTCEEEE-ETTTTEEEEECTT-SCEEEEE------
T ss_pred             EE-e-------------------------cCCCCCCCCccceECCCCCEEEE-ccCCCeEEEECCC-CCEEEcc------
Confidence            10 0                         00112246889999998876665 4347889999987 4332111      


Q ss_pred             ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEE
Q 010390          266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAY  345 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  345 (512)
                          .......+..++++++++++++...++.|..+|. ...   ...+........+..+++++++++.++....+.|.
T Consensus       141 ----~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  212 (300)
T 2qc5_A          141 ----LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK---LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIG  212 (300)
T ss_dssp             ----CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             ----CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc---EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence                1112345789999999996666666789999997 321   12222111223467789999998887777777899


Q ss_pred             EEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          346 VWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       346 iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +|+. ++.........+...+.++++.+++ .++++...++.|..||. +++
T Consensus       213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~  261 (300)
T 2qc5_A          213 RITT-TGEISEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITN-DNT  261 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECT-TSC
T ss_pred             EEcC-CCcEEEEECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECC-CCc
Confidence            9998 3332112223345678999999998 67777767789999998 444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.46  E-value=1.1e-10  Score=108.98  Aligned_cols=259  Identities=11%  Similarity=0.012  Sum_probs=157.8

Q ss_pred             eEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390           55 AVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  124 (512)
                      .+.+   ||||++|+++.          .++.|.+||..+.+.........    . .... +...-..+.|+|||++|+
T Consensus        70 ~i~~---spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~----~-~~~~-~g~~p~~~~~spDG~~l~  140 (373)
T 2mad_H           70 NPVA---AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD----A-PRFD-VGPYSWMNANTPNNADLL  140 (373)
T ss_pred             CeEE---CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC----c-cccc-cCCCccceEECCCCCEEE
Confidence            8888   99999999885          36789999997654311100000    0 0000 112345899999999999


Q ss_pred             EEeC--CCcEEEEeCCCCeeeec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          125 TASG--DQTIKIWDAEKKKCTGA-LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       125 s~~~--dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      .+..  ++.|.++| .+++.+.. +... .   ++.+.|.+...+++.+.||.+.++|. +++........         
T Consensus       141 v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~---------  205 (373)
T 2mad_H          141 FFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVG---------  205 (373)
T ss_pred             EEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecc---------
Confidence            8874  57899999 99988877 6432 2   24566777678888889999999999 65432110000         


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc-cccccccccCeeEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES-SSAKETRLHGISSL  280 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~  280 (512)
                                .  .............+.+++..++... .++.+.+.|+................ .............+
T Consensus       206 ----------~--~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~  272 (373)
T 2mad_H          206 ----------A--MLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV  272 (373)
T ss_pred             ----------c--cccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence                      0  0000011122345666666655544 57899999987553221110000000 00001112234457


Q ss_pred             EeCCCCCEEEEEec----------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEec-CCCCEEEEe
Q 010390          281 SQDSNGVFLTASCM----------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGS-SDGNAYVWQ  348 (512)
Q Consensus       281 ~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~-~dg~i~iw~  348 (512)
                      .+++++..++++..          .+.|.++|..+.+  .+..+..   ......++|+|||+ +++++. .++.|.+||
T Consensus       273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~--vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ--TSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE--EEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            89999998888653          3579999986532  3333322   22355699999999 677776 589999999


Q ss_pred             cCCCCCC
Q 010390          349 VNKPQAD  355 (512)
Q Consensus       349 ~~~~~~~  355 (512)
                      +.+.+..
T Consensus       348 ~~t~~vv  354 (373)
T 2mad_H          348 AGAGDQD  354 (373)
T ss_pred             CCCCCEE
Confidence            9987763

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.46  E-value=1.8e-12  Score=119.87  Aligned_cols=192  Identities=13%  Similarity=0.074  Sum_probs=133.3

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT  131 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~  131 (512)
                      +++.+++   ++...++++|+.++ +++|+++...........  +..... ...+.. |+.++|  |+.+|+++ .++.
T Consensus        39 ~~nlLai---s~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~--~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDI---SNSKSLFVAASGSK-AVVGELQLLRDHITSDST--PLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNA  107 (388)
T ss_dssp             CCBCEEE---ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSC--CCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred             cccEEEE---cCCCCEEEEeCCCE-EEEEEhhHhhhhhccccc--cccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCc
Confidence            5778888   99999999999885 666997643210000000  011111 224556 999999  89999998 8899


Q ss_pred             EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390          132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK  211 (512)
Q Consensus       132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (512)
                      |++||+.+.........|...+.++.+.+.   .++++..||.|.+||+.++...                         
T Consensus       108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~-------------------------  159 (388)
T 1xip_A          108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTK-------------------------  159 (388)
T ss_dssp             EEEEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEE-------------------------
T ss_pred             EEEEEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCccc-------------------------
Confidence            999999877665566667788988877653   3888899999999999865421                         


Q ss_pred             cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc--eecccCCCccccccccccccCeeEEEeCCCCCEE
Q 010390          212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA--QITQAWPHAESSSAKETRLHGISSLSQDSNGVFL  289 (512)
Q Consensus       212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  289 (512)
                            .+...|+|++|+|+|  +++ |..||.+++|+......  ......+..  ......+...|.++.|.+++.++
T Consensus       160 ------~~~~~Vs~v~WSpkG--~~v-g~~dg~i~~~~~~~~~~~~k~~I~~Pp~--~~~~~~~~~~V~sI~wl~~~~fl  228 (388)
T 1xip_A          160 ------QLAQNVTSFDVTNSQ--LAV-LLKDRSFQSFAWRNGEMEKQFEFSLPSE--LEELPVEEYSPLSVTILSPQDFL  228 (388)
T ss_dssp             ------EEEESEEEEEECSSE--EEE-EETTSCEEEEEEETTEEEEEEEECCCHH--HHTSCTTTSEEEEEEESSSSEEE
T ss_pred             ------cccCCceEEEEcCCc--eEE-EEcCCcEEEEcCCCccccccceecCCcc--cccccCCCeeEEEEEEecCCeEE
Confidence                  123479999999999  333 66799999998887664  323222211  00011356789999999999888


Q ss_pred             EEEe
Q 010390          290 TASC  293 (512)
Q Consensus       290 ~~~~  293 (512)
                      ++-.
T Consensus       229 v~y~  232 (388)
T 1xip_A          229 AVFG  232 (388)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            7643

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.46  E-value=6e-12  Score=129.62  Aligned_cols=244  Identities=10%  Similarity=-0.050  Sum_probs=149.4

Q ss_pred             CcceEEEEEecCCCcEEEEeeCC-----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDED-----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA  126 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~  126 (512)
                      .+.+++|   ||||++||.+..+     ..|++||+.+++.             +. ...+...+..++|+|| +.|+.+
T Consensus       164 ~~~~~~~---SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~-------------~~-~~~~~~~~~~~~wspD-~~l~~~  225 (741)
T 1yr2_A          164 ALDAWAA---SDDGRLLAYSVQDGGSDWRTVKFVGVADGKP-------------LA-DELKWVKFSGLAWLGN-DALLYS  225 (741)
T ss_dssp             EEEEEEE---CTTSSEEEEEEEETTCSEEEEEEEETTTCCE-------------EE-EEEEEEESCCCEESTT-SEEEEE
T ss_pred             EEEeEEE---CCCCCEEEEEEcCCCCceEEEEEEECCCCCC-------------CC-ccCCCceeccEEEECC-CEEEEE
Confidence            3445555   9999999987543     4599999988753             11 1111112357899999 999988


Q ss_pred             eCCCc--------------EEEEeCCCCe----eeecccCcCCCEEEEEeeCCCCCeEEEEeCC-----CcEEEEeCCCC
Q 010390          127 SGDQT--------------IKIWDAEKKK----CTGALMGHTGSIKSLCSHPTNSDILVSGSRD-----GSFAIWDLRCK  183 (512)
Q Consensus       127 ~~dg~--------------i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~  183 (512)
                      +.++.              |++|++.++.    .+.....+...+..+.|+|++ ++|+..+.+     ..|.+||+.++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          226 RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCC
Confidence            77654              8999998765    222233344468899999998 666666544     38999998754


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec---CCeEEEEeccCcc-ceecc
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV---NSIVKFWDTRNLK-AQITQ  259 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~---dg~i~iwd~~~~~-~~~~~  259 (512)
                      ....                         ...+..+...+... +.+++..+++.+..   ++.|.+||+.+.. .....
T Consensus       305 ~~~~-------------------------~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l  358 (741)
T 1yr2_A          305 KIGP-------------------------VTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV  358 (741)
T ss_dssp             EECC-------------------------CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE
T ss_pred             CCcc-------------------------cEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE
Confidence            1100                         00111222233333 34888888876532   4569999988742 11111


Q ss_pred             cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE--
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS--  337 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--  337 (512)
                                ...+...+..+.++ ++.++++...++..++|.+.. .......+... ....+..++++|+++.|+.  
T Consensus       359 ----------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~  425 (741)
T 1yr2_A          359 ----------VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL-DGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSF  425 (741)
T ss_dssp             ----------ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET-TSCEEEECBCS-SSCEEEEEECCBTCSCEEEEE
T ss_pred             ----------ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-CCCceeeccCC-CCeEEEEeecCCCCCEEEEEE
Confidence                      11222336667777 667788888899877776542 12223333221 1344667889999886652  


Q ss_pred             --ecCCCCEEEEecCCCC
Q 010390          338 --GSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       338 --g~~dg~i~iw~~~~~~  353 (512)
                        ....+.|++||+.+++
T Consensus       426 ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          426 SSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EETTEEEEEEEEETTTTE
T ss_pred             cCCCCCCEEEEEECCCCc
Confidence              3345789999997754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=6e-11  Score=112.50  Aligned_cols=244  Identities=9%  Similarity=0.035  Sum_probs=161.9

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCC
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSP  186 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~  186 (512)
                      .....|+|+++++++++...++.|++||..+++......... ... ++|++++ ..|+++..++  .|.+|+.......
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCcee
Confidence            478899999999877777778999999998887665544322 233 8999988 7777777765  7888887643321


Q ss_pred             CCccccceeeecccccccccccccccceeccc-ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA-ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                      ...                        ..... ....+.+++++|++..++++. .++.|..||..+..........   
T Consensus       208 ~~~------------------------g~~~~~~~~~p~~iav~p~~g~lyv~d-~~~~I~~~d~~~~~~~~~~~~~---  259 (409)
T 3hrp_A          208 TRI------------------------GQLGSTFSGKIGAVALDETEEWLYFVD-SNKNFGRFNVKTQEVTLIKQLE---  259 (409)
T ss_dssp             EEE------------------------EECCTTSCSCCCBCEECTTSSEEEEEC-TTCEEEEEETTTCCEEEEEECC---
T ss_pred             EEe------------------------eeccchhcCCcEEEEEeCCCCeEEEEE-CCCcEEEEECCCCCEEEEeccc---
Confidence            100                        00001 234677899999666666643 5889999999876533211000   


Q ss_pred             ccccccccccC--eeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeece-------------eceeEEEEEEC
Q 010390          266 SSSAKETRLHG--ISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-------------IESFYVKSEIC  329 (512)
Q Consensus       266 ~~~~~~~~~~~--i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s  329 (512)
                          .......  ...++|+|+ +.++++-..++.|+.|+....    ...+.+..             .-.....++++
T Consensus       260 ----~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d  331 (409)
T 3hrp_A          260 ----LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVD  331 (409)
T ss_dssp             ----CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC
T ss_pred             ----ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEe
Confidence                0111111  138999995 555556667789999986431    22222221             01236679999


Q ss_pred             CCCCEEEEec-CCCCEEEEecCCCCCCCceeccc---------------cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          330 PNASHILSGS-SDGNAYVWQVNKPQADPIKLKSH---------------DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       330 ~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~h---------------~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      ++|+++++-. .++.|+.|++.++..  ..+.++               -.....+++++++ .++++-..++.|+.+++
T Consensus       332 ~dG~lyvad~~~~~~I~~~~~~~G~v--~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          332 EDGNFYIVDGFKGYCLRKLDILDGYV--STVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCCEEEEETTTTCEEEEEETTTTEE--EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCEEEEEECCCCEE--EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEe
Confidence            9999888877 889999999766543  233333               2468999999998 78888888889988876


Q ss_pred             C
Q 010390          394 E  394 (512)
Q Consensus       394 ~  394 (512)
                      +
T Consensus       409 e  409 (409)
T 3hrp_A          409 E  409 (409)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=3.6e-11  Score=113.99  Aligned_cols=252  Identities=9%  Similarity=0.023  Sum_probs=158.4

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC--
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ--  130 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--  130 (512)
                      +..|++   +++++++++...++.|++||.+++..              ..+........ ++|+++++.|+++..++  
T Consensus       133 P~~la~---d~~g~lyv~d~~~~~I~~id~~~g~~--------------~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~  194 (409)
T 3hrp_A          133 MWGIAA---VGNNTVLAYQRDDPRVRLISVDDNKV--------------TTVHPGFKGGK-PAVTKDKQRVYSIGWEGTH  194 (409)
T ss_dssp             EEEEEE---CSTTEEEEEETTTTEEEEEETTTTEE--------------EEEEETCCBCB-CEECTTSSEEEEEBSSTTC
T ss_pred             ceEEEE---eCCCCEEEEecCCCcEEEEECCCCEE--------------EEeeccCCCCc-eeEecCCCcEEEEecCCCc
Confidence            445555   99999888888889999999876532              11111122333 89999999999888766  


Q ss_pred             cEEEEeCCCCeeeecc----cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          131 TIKIWDAEKKKCTGAL----MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      .|.+|+...+.....+    ......+.+++++|+++. |+.+..++.|+.||..++......       ..        
T Consensus       195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~-------~~--------  258 (409)
T 3hrp_A          195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIK-------QL--------  258 (409)
T ss_dssp             EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEE-------EC--------
T ss_pred             eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEe-------cc--------
Confidence            7888887765443333    224456788999996534 444677889999998755311100       00        


Q ss_pred             ccccccceeccccccc--EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc--ccccccccCeeEEEe
Q 010390          207 LSQSKRVSRRKAASMS--ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS--SAKETRLHGISSLSQ  282 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~  282 (512)
                              ........  ...++|+|++..++++...++.|+.|+.........-........  ............+++
T Consensus       259 --------~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~  330 (409)
T 3hrp_A          259 --------ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTV  330 (409)
T ss_dssp             --------CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEE
T ss_pred             --------cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEE
Confidence                    00001111  128999997677777676789999999775421111000000000  000111244789999


Q ss_pred             CCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeece-------------eceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          283 DSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCR-------------IESFYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       283 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                      +++|+++++-. .++.|+.|++.+.   .+..+.+..             .-.....+++++++.++++-..++.|+.++
T Consensus       331 d~dG~lyvad~~~~~~I~~~~~~~G---~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          331 DEDGNFYIVDGFKGYCLRKLDILDG---YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             CTTCCEEEEETTTTCEEEEEETTTT---EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             eCCCCEEEEeCCCCCEEEEEECCCC---EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence            99999777777 7899999996442   233333320             013467799999988888888888898876


Q ss_pred             c
Q 010390          349 V  349 (512)
Q Consensus       349 ~  349 (512)
                      +
T Consensus       408 ~  408 (409)
T 3hrp_A          408 V  408 (409)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.41  E-value=2.5e-10  Score=103.55  Aligned_cols=239  Identities=8%  Similarity=-0.015  Sum_probs=147.6

Q ss_pred             CCCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390          107 HQNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS  185 (512)
Q Consensus       107 h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  185 (512)
                      +..--.+..|++++. .+++...++.|..||..+++.. .+. ....+.++++++++ +++++ . ++.|.+||..+++.
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcE
Confidence            344566889999655 4556667899999999887652 232 44679999999988 55544 4 56899999875432


Q ss_pred             CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC--------CeEEEEeccCcccee
Q 010390          186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--------SIVKFWDTRNLKAQI  257 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--------g~i~iwd~~~~~~~~  257 (512)
                      ......                       ........+..++++|+|+.++.....+        ..-.+|.+.......
T Consensus        86 ~~~~~~-----------------------~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~  142 (297)
T 3g4e_A           86 VVLATV-----------------------DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK  142 (297)
T ss_dssp             EEEEEC-----------------------CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred             EEEEec-----------------------CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence            110000                       0001123578899999999766543211        223444443221111


Q ss_pred             cccCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCCc--eEeeeec-eeceeEEEEEECCCCC
Q 010390          258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGP--IQHFSGC-RIESFYVKSEICPNAS  333 (512)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~--~~~~~~~-~~~~~~~~~~~s~~~~  333 (512)
                                 ...........++|+|+++.|+.+ +.++.|.+||+.......  ...+... ........++++++|+
T Consensus       143 -----------~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          143 -----------KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             -----------EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred             -----------EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence                       112222346789999999877554 567899999974211111  1111111 1123456789999998


Q ss_pred             EEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeC-CCCCCeEEEEeCC
Q 010390          334 HILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC-PNEAGKIVTSSDD  385 (512)
Q Consensus       334 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~l~s~~~d  385 (512)
                      +.++...++.|..||..+++. ...+..+...+++++|. |++..++++...+
T Consensus       212 lwva~~~~~~v~~~d~~tG~~-~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          212 LWVACYNGGRVIRLDPVTGKR-LQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEEEEETTTEEEEECTTTCCE-EEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEEEcCCCEEEEEcCCCceE-EEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            888877778899999987665 34555566789999998 7873445555443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=6.8e-12  Score=116.50  Aligned_cols=274  Identities=8%  Similarity=0.065  Sum_probs=164.9

Q ss_pred             CCcceEEEEEecCCCcEEEEee--CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSD--EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      ..+..|++   +++|+++++..  .++.++||.+.++.. . .+.   ..  ......|...+..+++.++++++++-..
T Consensus        17 ~~p~~va~---~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~-~~p---~~--~~~~~~~~~~p~gv~~d~~g~L~v~D~g   86 (343)
T 2qe8_A           17 LAPGNITL---TPDGRLFLSLHQFYQPEMQVAELTQDGL-I-PFP---PQ--SGNAIITFDTVLGIKSDGNGIVWMLDNG   86 (343)
T ss_dssp             SCEEEEEE---CTTSCEEEEECGGGCCSCSEEEEETTEE-E-ESC---CC--CSSCCCCCSCEEEEEECSSSEEEEEECH
T ss_pred             CCcceEEE---CCCCCEEEEeCCCCCCceEEEEECCCCe-e-cCC---Cc--ccCcccceeEeeEEEEcCCCcEEEEcCC
Confidence            67888998   99999988853  234366666543211 0 000   00  0112346678999999999876665433


Q ss_pred             -----CCcEEEEeCCCCeeeecccC------cCCCEEEEEeeCCCCCeEEEEe---CCCcEEEEeCCCCCCCCCccccce
Q 010390          129 -----DQTIKIWDAEKKKCTGALMG------HTGSIKSLCSHPTNSDILVSGS---RDGSFAIWDLRCKSSPKSNCAESF  194 (512)
Q Consensus       129 -----dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~  194 (512)
                           ++.|.+||+.+++.+..+..      +...+..+++.++++..+++..   .++.|.+||+.+++.....     
T Consensus        87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-----  161 (343)
T 2qe8_A           87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL-----  161 (343)
T ss_dssp             HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC-----
T ss_pred             CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe-----
Confidence                 57899999999986665532      2245689999986645556655   6789999999765421110     


Q ss_pred             eeecccccccccccccccceeccccccc-EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390          195 VFSSAVVKGAHLLSQSKRVSRRKAASMS-ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR  273 (512)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  273 (512)
                                            ..|... .....+..++..+.+ ...++.+..|.                        
T Consensus       162 ----------------------~~~~~~~~~~~~~~~~g~~~~~-~~~~g~~~~~~------------------------  194 (343)
T 2qe8_A          162 ----------------------QGYPGIAPEDIDLVIDGVPVQI-GQPDGTVIRPH------------------------  194 (343)
T ss_dssp             ----------------------TTCTTTSCCSCCCEETTEECBE-ECTTSCEECCC------------------------
T ss_pred             ----------------------cCCCcccccccceeECCEEEEe-ccCCCceecee------------------------
Confidence                                  000000 000223334544433 23455554432                        


Q ss_pred             ccCeeEEEeCCCCCEEEEEecCC-eEEEEEcccCCCC---------ceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390          274 LHGISSLSQDSNGVFLTASCMDH-RIYLYNVLQLDKG---------PIQHFSGCRIESFYVKSEICPNASHILSGSSDGN  343 (512)
Q Consensus       274 ~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  343 (512)
                       ..+..|+++|+++.|+++...+ .+..++.......         .+... +.  ......++++++|.++++...++.
T Consensus       195 -~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~--~g~pdgia~d~~G~l~va~~~~~~  270 (343)
T 2qe8_A          195 -LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SE--KPICDGISIDKDHNIYVGDLAHSA  270 (343)
T ss_dssp             -CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EE--CCSCSCEEECTTCCEEEEEGGGTE
T ss_pred             -cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-cc--CCCCceEEECCCCCEEEEccCCCe
Confidence             1267799999999888887665 6666654221110         00111 11  112334899999999999988999


Q ss_pred             EEEEecCCCCCCCceec-cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          344 AYVWQVNKPQADPIKLK-SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       344 i~iw~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      |.+||..+++.. .... .+-..+.+++|.+++ .++++.+..+.+.+|.
T Consensus       271 V~~~d~~~G~~~-~~~~~~~~~~p~~va~~~~g-~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          271 IGVITSADRAYK-LLVTDEKLSWTDSFNFGSDG-YLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EEEEETTTTEEE-EEEECGGGSCEEEEEECTTS-CEEEEECCGGGSGGGB
T ss_pred             EEEEECCCCCEE-EEEECCceecCCeeEECCCC-cEEEEeCccccccccc
Confidence            999998444321 1221 224568999999988 7887777655554444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.40  E-value=2e-11  Score=124.59  Aligned_cols=251  Identities=12%  Similarity=0.065  Sum_probs=154.9

Q ss_pred             cCCCcEEEEEEecCCCEEEEE-----eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC-------
Q 010390          106 AHQNAIFDLCWIKEDTNILTA-----SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG-------  173 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-------  173 (512)
                      +|...+..++|||||++||.+     +.+..|++||+.+++.+.... +......++|+ ++ +.|+.++.+.       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GN-EGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TT-TEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CC-CEEEEEEecCccccccc
Confidence            466689999999999999843     233579999999998654311 11112467899 88 6677766663       


Q ss_pred             ------cEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccc-ccccEEEEEEeecCCEEEEEeec---CC
Q 010390          174 ------SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA-ASMSITSVLYLKDEVSIATASAV---NS  243 (512)
Q Consensus       174 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~g~~---dg  243 (512)
                            .|++|++.+......                       .+..... +.....++.|+|+++.++++...   +.
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~-----------------------~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  259 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDR-----------------------LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGN  259 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCE-----------------------EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred             ccCCCcEEEEEECCCCcccce-----------------------EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence                  388888875432110                       0111112 33457789999999998765542   25


Q ss_pred             eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cC---CeEEEEEcccCCCCceEeeeecee
Q 010390          244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MD---HRIYLYNVLQLDKGPIQHFSGCRI  319 (512)
Q Consensus       244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d---g~i~i~d~~~~~~~~~~~~~~~~~  319 (512)
                      .|+++|+.++.....          .+..+....... +++++..|+..+ .+   +.|..+|+..........+..+..
T Consensus       260 ~i~~~d~~~~~~~~~----------~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  328 (693)
T 3iuj_A          260 RLYVKDLSQENAPLL----------TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ  328 (693)
T ss_dssp             EEEEEETTSTTCCCE----------EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred             EEEEEECCCCCCceE----------EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence            899999887642211          122222333333 555665555443 33   689999987654322334444432


Q ss_pred             ceeEEEEEECCCCCEEEEecCCC---CEEEEecCCCCCCCcee-ccccCCeEEEEeCCCCCCeEEEEeC---CCcEEEEe
Q 010390          320 ESFYVKSEICPNASHILSGSSDG---NAYVWQVNKPQADPIKL-KSHDGEVTAVNWCPNEAGKIVTSSD---DYTVRLWS  392 (512)
Q Consensus       320 ~~~~~~~~~s~~~~~l~~g~~dg---~i~iw~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~---dg~i~vwd  392 (512)
                      .  +.  .|++++++|+....++   .|++|++.....  ..+ ....+.+..+.+++++..++++.+.   -+.|..||
T Consensus       329 ~--~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~--~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          329 Q--VL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV--REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             S--CE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE--EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             C--EE--EEEEECCEEEEEEEECCeeEEEEEECCCCee--EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            2  22  7889998887665543   688998875432  222 2345568888888888444444443   27899999


Q ss_pred             CCCCccc
Q 010390          393 LENSRCS  399 (512)
Q Consensus       393 ~~~~~~~  399 (512)
                      +.+++..
T Consensus       403 ~~~g~~~  409 (693)
T 3iuj_A          403 PKSGAIS  409 (693)
T ss_dssp             TTTCCEE
T ss_pred             CCCCeEE
Confidence            9887643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.38  E-value=3.2e-10  Score=102.90  Aligned_cols=230  Identities=9%  Similarity=-0.019  Sum_probs=144.4

Q ss_pred             CcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           52 PPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        52 ~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      -..+..|   +++ +.++++...++.|..||..++..              ..+ .....+.+++++++++++++ . ++
T Consensus        14 ~~Egp~w---~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~-~~~~~~~~i~~~~dG~l~v~-~-~~   73 (297)
T 3g4e_A           14 CGESPVW---EEVSNSLLFVDIPAKKVCRWDSFTKQV--------------QRV-TMDAPVSSVALRQSGGYVAT-I-GT   73 (297)
T ss_dssp             BEEEEEE---ETTTTEEEEEETTTTEEEEEETTTCCE--------------EEE-ECSSCEEEEEEBTTSSEEEE-E-TT
T ss_pred             cccCCeE---ECCCCEEEEEECCCCEEEEEECCCCcE--------------EEE-eCCCceEEEEECCCCCEEEE-E-CC
Confidence            3456777   774 56777777889999999876531              111 23467999999999995554 4 56


Q ss_pred             cEEEEeCCCCeeeecccC----cCCCEEEEEeeCCCCCeEEEEeCC---------CcEEEEeCCCCCCCCCccccceeee
Q 010390          131 TIKIWDAEKKKCTGALMG----HTGSIKSLCSHPTNSDILVSGSRD---------GSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      .|.+||..+++.......    ....++.+++.|++ +++++...+         ..-.+|.+.......          
T Consensus        74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----------  142 (297)
T 3g4e_A           74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVK----------  142 (297)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE----------
T ss_pred             eEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEE----------
Confidence            799999988765332221    12357899999988 666554322         233455544221100          


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc--CccceecccCCCcccccccccccc
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                       ...........++|+|+++.++++.+.++.|.+||+.  ++........      ........
T Consensus       143 -----------------~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~------~~~~~~~~  199 (297)
T 3g4e_A          143 -----------------KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV------YKLEKEEQ  199 (297)
T ss_dssp             -----------------EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE------EECCGGGC
T ss_pred             -----------------EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE------EECCCCCC
Confidence                             1111223567899999999888877778999999974  3332110000      01112234


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC-CCCCEEEEec
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-PNASHILSGS  339 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~  339 (512)
                      ....++++++|++.++....+.|.+||..+++  .+..+...  ...+++++|. |+++.|+.++
T Consensus       200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~--~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK--RLQTVKLP--VDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEEEEEEBTTSCEEEEEETTTEEEEECTTTCC--EEEEEECS--SSBEEEEEEESGGGCEEEEEE
T ss_pred             CCCeeEECCCCCEEEEEcCCCEEEEEcCCCce--EEEEEECC--CCCceEEEEeCCCCCEEEEEc
Confidence            57889999999877777778899999975432  33333322  1346789998 7877665443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.37  E-value=1.2e-10  Score=106.27  Aligned_cols=242  Identities=9%  Similarity=0.004  Sum_probs=150.1

Q ss_pred             eeccccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          101 ISDWVAHQNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      +..+...........|+|+++ ++++...++.|..|+. +++ ...+..+...+..+++.+++ +++++...++.|.+|+
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEEC
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEEC
Confidence            344445556778899999998 5567777899999997 454 34454566779999999988 6666655667899998


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE---eec-------------CC
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA---SAV-------------NS  243 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---g~~-------------dg  243 (512)
                      .. ++... ...                      .........+..+++.++|..+++-   |..             .+
T Consensus       114 ~~-g~~~~-~~~----------------------~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~  169 (305)
T 3dr2_A          114 AD-GQAHL-LVG----------------------RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH  169 (305)
T ss_dssp             TT-SCEEE-EEC----------------------EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred             CC-CCEEE-EEe----------------------ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC
Confidence            75 32110 000                      0000112346778999999877641   211             25


Q ss_pred             eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC------CeEEEEEcccCCCCceEeeeec
Q 010390          244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD------HRIYLYNVLQLDKGPIQHFSGC  317 (512)
Q Consensus       244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~  317 (512)
                      .|..||..+++....            . .......++|+|+++.|+++...      +.|.+|++..........+...
T Consensus       170 ~v~~~d~~~g~~~~~------------~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~  236 (305)
T 3dr2_A          170 SVYRLPPDGSPLQRM------------A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV  236 (305)
T ss_dssp             EEEEECSSSCCCEEE------------E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC
T ss_pred             eEEEEcCCCCcEEEE------------e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC
Confidence            677777765543321            1 22346789999999988887665      7899999864220001111100


Q ss_pred             eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390          318 RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVR  389 (512)
Q Consensus       318 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~  389 (512)
                       .......++++++|++.++. .++ |.+|+... +. ...+..+. .+.+++|.+++ +.|..++.++..+
T Consensus       237 -~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~~g-~~-~~~~~~~~-~~~~~~f~~d~-~~L~it~~~~l~~  301 (305)
T 3dr2_A          237 -PDGLPDGFCVDRGGWLWSSS-GTG-VCVFDSDG-QL-LGHIPTPG-TASNCTFDQAQ-QRLFITGGPCLWM  301 (305)
T ss_dssp             -SSSCCCSEEECTTSCEEECC-SSE-EEEECTTS-CE-EEEEECSS-CCCEEEECTTS-CEEEEEETTEEEE
T ss_pred             -CCCCCCeEEECCCCCEEEec-CCc-EEEECCCC-CE-EEEEECCC-ceeEEEEeCCC-CEEEEEcCCeEEE
Confidence             01122347889999955444 455 99999843 32 23343333 58899999888 6777766665433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.36  E-value=6.8e-11  Score=120.62  Aligned_cols=244  Identities=12%  Similarity=0.089  Sum_probs=148.7

Q ss_pred             CccCCcceEEEEEecCCCcEEEEe-----eCCCcEEEEECCCCCCccccccccccccceeccccCCCc--EEEEEEecCC
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVS-----DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA--IFDLCWIKED  120 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~s~~~  120 (512)
                      +|...+.+++|   ||||++||.+     +.+..|++||+.+++.             +..   +...  ...++|+ |+
T Consensus       126 ~~~~~l~~~~~---SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~-------------~~~---~~~~~k~~~~~Ws-Dg  185 (693)
T 3iuj_A          126 DGTTALDQLSF---SRDGRILAYSLSLAGSDWREIHLMDVESKQP-------------LET---PLKDVKFSGISWL-GN  185 (693)
T ss_dssp             TSCCEEEEEEE---CTTSSEEEEEEECSSCCEEEEEEEETTTCSE-------------EEE---EEEEEESCCCEEE-TT
T ss_pred             CCcEEEEEEEE---CCCCCEEEEEEecCCCceEEEEEEECCCCCC-------------Ccc---ccCCceeccEEEe-CC
Confidence            45544555555   9999999854     3335799999988753             110   1112  2467899 99


Q ss_pred             CEEEEEeCCCc-------------EEEEeCCCCe----eeecccC-cCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEe
Q 010390          121 TNILTASGDQT-------------IKIWDAEKKK----CTGALMG-HTGSIKSLCSHPTNSDILVSGSRD---GSFAIWD  179 (512)
Q Consensus       121 ~~l~s~~~dg~-------------i~iwd~~~~~----~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd  179 (512)
                      +.|+.++.+..             |++|++.++.    ++..... |...+..+.|+|++..++++.+.+   ..|.++|
T Consensus       186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  265 (693)
T 3iuj_A          186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD  265 (693)
T ss_dssp             TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred             CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence            99998887743             9999998764    3333344 455678899999994444554432   5899999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC---CeEEEEeccCccce
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN---SIVKFWDTRNLKAQ  256 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d---g~i~iwd~~~~~~~  256 (512)
                      +.++....                          ..+..+....... +++++..++..+..+   +.|..+|+.++...
T Consensus       266 ~~~~~~~~--------------------------~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~  318 (693)
T 3iuj_A          266 LSQENAPL--------------------------LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA  318 (693)
T ss_dssp             TTSTTCCC--------------------------EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred             CCCCCCce--------------------------EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence            87653211                          0111222233333 667777776655443   68999999876431


Q ss_pred             ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC---eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390          257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH---RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  333 (512)
                      ...         .+..+...+.  .|+++++.|+....++   .|++||+...   ....+.. .....+..+.++++++
T Consensus       319 ~~~---------~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~---~~~~l~~-p~~~~~~~~~~~~d~~  383 (693)
T 3iuj_A          319 HWR---------DLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK---RVREVAL-PGLGSVSGFNGKHDDP  383 (693)
T ss_dssp             GCE---------EEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC---EEEEECC-SSSSEEEECCCCTTCS
T ss_pred             ccE---------EEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC---eeEEeec-CCCceEEeeecCCCCC
Confidence            000         1222223333  7888888887766543   6888887532   2222221 1123355567788887


Q ss_pred             EEEEecCC----CCEEEEecCCCC
Q 010390          334 HILSGSSD----GNAYVWQVNKPQ  353 (512)
Q Consensus       334 ~l~~g~~d----g~i~iw~~~~~~  353 (512)
                      .|+....+    +.|+.||+.+++
T Consensus       384 ~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          384 ALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             CEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEEecCCCCCCEEEEEECCCCe
Confidence            76654433    789999987654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.36  E-value=2.4e-11  Score=112.19  Aligned_cols=264  Identities=7%  Similarity=-0.073  Sum_probs=163.2

Q ss_pred             cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe----------CCCcEEEEeCCCCeeeec
Q 010390           76 YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS----------GDQTIKIWDAEKKKCTGA  145 (512)
Q Consensus        76 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~  145 (512)
                      .|.++|..+.+.             +.++..-..+  .+.++||+++++.+.          .++.|.+||+.+++.+.+
T Consensus        47 ~vsvID~~t~~v-------------~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           47 ENWVSCAGCGVT-------------LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEEETTTTEE-------------EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             eEEEEECCCCeE-------------EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            788999887643             4445444455  799999999999876          368899999999999888


Q ss_pred             ccCc-------CCCEEEEEeeCCCCCeEEEEeC--CCcEEE--EeCCCCCCCCCccccceeeecccccccccccccccce
Q 010390          146 LMGH-------TGSIKSLCSHPTNSDILVSGSR--DGSFAI--WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVS  214 (512)
Q Consensus       146 ~~~h-------~~~v~~l~~~~~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (512)
                      +...       ......+.++|++ ++++.+..  +..|.+  +|..+   ...                          
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDG-k~lyVan~~~~~~v~V~~iD~~t---v~~--------------------------  161 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASD---DQL--------------------------  161 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEE---EEE--------------------------
T ss_pred             EECCCccccccCCCcceEEEcCCC-CEEEEEccCCCCeEEEEEEchhh---ceE--------------------------
Confidence            7533       1235578999999 66666653  457888  88864   000                          


Q ss_pred             ecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-----ccceecccCCCccccccccccccCeeEEEeCCCCCEE
Q 010390          215 RRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-----LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL  289 (512)
Q Consensus       215 ~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  289 (512)
                       ... ..   +....|++...+.+.+.|+.+.+.|+.+     ++...... .      .......+.   . .+++..+
T Consensus       162 -i~v-~~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~------~i~vg~~P~---~-~~~~~~~  225 (368)
T 1mda_H          162 -TKS-AS---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-G------AQNCSSQAA---Q-ANYPGML  225 (368)
T ss_dssp             -EEC-SS---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-T------TSCBCSCCE---E-ETTTTEE
T ss_pred             -EEC-CC---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-e------eeeCCCCcc---c-cccCCEE
Confidence             000 00   1123456655555555788888888876     33221100 0      011111222   3 5555555


Q ss_pred             EEEecCCeEEEEEcccCCCCceEeeeec--------eeceeEEEEEECCCCCEEEEecC---------CCCEEEEecCCC
Q 010390          290 TASCMDHRIYLYNVLQLDKGPIQHFSGC--------RIESFYVKSEICPNASHILSGSS---------DGNAYVWQVNKP  352 (512)
Q Consensus       290 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~g~~---------dg~i~iw~~~~~  352 (512)
                      +..+. +.+.+.|+.......+..+.-.        ........++++|+++.++.+..         ++.+.++|+.+.
T Consensus       226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~  304 (368)
T 1mda_H          226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence            55555 9999999854221111111100        00000111579999988876532         235679999987


Q ss_pred             CCCCceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCCCccccccc
Q 010390          353 QADPIKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       353 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~  403 (512)
                      +.. ..+... ....+++|+||+..++++.. .++.|.++|+.+++.+....
T Consensus       305 ~vv-~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          305 QTS-GPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             CEE-ECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             eEE-EEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            653 233222 25889999999955777777 69999999999999877543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.36  E-value=1.2e-11  Score=114.33  Aligned_cols=175  Identities=11%  Similarity=0.033  Sum_probs=122.8

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---------eee-cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKK---------CTG-ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      .++.+++++...++++|+.++ +++|++.+.+         ... ....+.. |+.++|  ++ ..|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEE
Confidence            689999999999999999986 6679865433         111 1223556 999999  55 788888 889999999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~  259 (512)
                      +.+.....                           ....+...+.++.+.+..  +++ +..||.|.+||+.++....  
T Consensus       113 v~sl~~~~---------------------------~~~~~~~~v~~i~~~~p~--~av-~~~dG~L~v~dl~~~~~~~--  160 (388)
T 1xip_A          113 LEELSEFR---------------------------TVTSFEKPVFQLKNVNNT--LVI-LNSVNDLSALDLRTKSTKQ--  160 (388)
T ss_dssp             SSSTTCEE---------------------------EEEECSSCEEEEEECSSE--EEE-EETTSEEEEEETTTCCEEE--
T ss_pred             chhhhccC---------------------------ccceeecceeeEEecCCC--EEE-EECCCCEEEEEccCCcccc--
Confidence            98654211                           122334456677665542  555 4579999999999765431  


Q ss_pred             cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee----c---eeceeEEEEEECCCC
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG----C---RIESFYVKSEICPNA  332 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~---~~~~~~~~~~~s~~~  332 (512)
                                   +...|++++|+|+|  ++.|..||.+++|+...........+..    .   .....+.++.|.+++
T Consensus       161 -------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          161 -------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             -------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             -------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence                         23579999999999  6789999999999875433111223311    0   124668899999999


Q ss_pred             CEEEE
Q 010390          333 SHILS  337 (512)
Q Consensus       333 ~~l~~  337 (512)
                      .++++
T Consensus       226 ~flv~  230 (388)
T 1xip_A          226 DFLAV  230 (388)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99886

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.35  E-value=2.3e-10  Score=105.39  Aligned_cols=251  Identities=14%  Similarity=0.113  Sum_probs=155.2

Q ss_pred             eEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceeccccC-------CCcEEEEEEe
Q 010390           55 AVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-------QNAIFDLCWI  117 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~s  117 (512)
                      .+.+   +|||++++++.          .++.|.+||..+.+.             +.++.-.       ...-..+.|+
T Consensus        82 ~va~---spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v-------------~~~I~v~~g~r~~~g~~P~~~a~s  145 (386)
T 3sjl_D           82 NPVV---ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP-------------TADIELPDAPRFLVGTYPWMTSLT  145 (386)
T ss_dssp             EEEE---CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-------------EEEEEETTCCCCCBSCCGGGEEEC
T ss_pred             cEEE---CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE-------------EEEEECCCccccccCCCCceEEEc
Confidence            3777   99999887775          367899999988653             2222110       1234568999


Q ss_pred             cCCCEEEEEeC--CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          118 KEDTNILTASG--DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       118 ~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      |||++|+.+..  ++.|.++|+.+++.+.++....  .  ....|.+...+++.+.||.+.+.++...........    
T Consensus       146 pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~----  217 (386)
T 3sjl_D          146 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT----  217 (386)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC----
T ss_pred             CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec----
Confidence            99999998764  6899999999999988885322  1  223465657888999999999999876322210000    


Q ss_pred             eecccccccccccccccceecccccccE-EEEEEe-ecCCEEEEEeecCCeEEEEeccCccceecccCC-Cccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSI-TSVLYL-KDEVSIATASAVNSIVKFWDTRNLKAQITQAWP-HAESSSAKET  272 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~-~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~  272 (512)
                                        ..+......+ ....|. ++|+.+++ . .+|.|++.|+.+.......... ..........
T Consensus       218 ------------------~~~~~~~~~~~~~~~~~~~dG~~~~v-s-~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~  277 (386)
T 3sjl_D          218 ------------------EVFHPEDEFLINHPAYSQKAGRLVWP-T-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGW  277 (386)
T ss_dssp             ------------------CCCSCTTSCBCSCCEEETTTTEEEEE-B-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred             ------------------ceeccccccccccceeEcCCCcEEEE-e-CCCEEEEEECCCCcceeecceeccccccccccc
Confidence                              0000000111 122554 56655554 3 5899999999766432211000 0000000111


Q ss_pred             cccCeeEEEeCCCCCEEEEEec----------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEE-ecC
Q 010390          273 RLHGISSLSQDSNGVFLTASCM----------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILS-GSS  340 (512)
Q Consensus       273 ~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~-g~~  340 (512)
                      .......++++++++.+++...          .+.|.++|+.+.+  .+..+.-.   .....+++++|++ +|++ ...
T Consensus       278 ~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k--v~~~i~vg---~~~~~lavs~D~~~~ly~tn~~  352 (386)
T 3sjl_D          278 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--RLAKFEMG---HEIDSINVSQDEKPLLYALSTG  352 (386)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEE---EEECEEEECSSSSCEEEEEETT
T ss_pred             cCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe--EEEEEECC---CCcceEEECCCCCeEEEEEcCC
Confidence            2234556888999998888753          2579999987643  33333221   2355699999997 6655 455


Q ss_pred             CCCEEEEecCCCCC
Q 010390          341 DGNAYVWQVNKPQA  354 (512)
Q Consensus       341 dg~i~iw~~~~~~~  354 (512)
                      ++.|.++|..+++.
T Consensus       353 ~~~VsViD~~t~k~  366 (386)
T 3sjl_D          353 DKTLYIHDAESGEE  366 (386)
T ss_dssp             TTEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcE
Confidence            89999999988765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.32  E-value=2e-09  Score=99.05  Aligned_cols=233  Identities=8%  Similarity=-0.068  Sum_probs=143.0

Q ss_pred             cEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390          110 AIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       110 ~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  188 (512)
                      ...+..|+|++. .+++...++.|..||..+++... +. ....+.+++|.+++ .++++. .+ .|.+||..+++....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg-~l~v~~-~~-gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDS-KQLIAS-DD-GLFLRDTATGVLTLH  124 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETT-EEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCC-eEEEEE-CC-CEEEEECCCCcEEEE
Confidence            346788999755 45566678899999998876432 32 34679999999987 666554 44 499999876542110


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec-----CCeEEEEeccCccceecccCCC
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-----NSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-----dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      ...                       ........+.++.++++|+.++.....     .+.|..++  +++...      
T Consensus       125 ~~~-----------------------~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~------  173 (326)
T 2ghs_A          125 AEL-----------------------ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK------  173 (326)
T ss_dssp             ECS-----------------------STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE------
T ss_pred             eeC-----------------------CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE------
Confidence            000                       000112358899999999876653321     24566666  332211      


Q ss_pred             ccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcc--cC-CCCceEeeeec-eeceeEEEEEECCCCCEEEEe
Q 010390          264 AESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVL--QL-DKGPIQHFSGC-RIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~-~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g  338 (512)
                            ..........++|+++++.|+.+. .++.|.+||+.  ++ .......+... ........++++++|++.++.
T Consensus       174 ------~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~  247 (326)
T 2ghs_A          174 ------LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR  247 (326)
T ss_dssp             ------EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             ------eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence                  111223467899999998776554 56899999985  32 21111112111 112234568999999887777


Q ss_pred             cCCCCEEEEecCCCCCCCceeccccCCeEEEEeC-CCCCCeEEEEeCCC
Q 010390          339 SSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC-PNEAGKIVTSSDDY  386 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~l~s~~~dg  386 (512)
                      ..++.|.+|+.. ++. ...+..+...+++++|. +++..++++...++
T Consensus       248 ~~~~~v~~~d~~-g~~-~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          248 WGEGAVDRYDTD-GNH-IARYEVPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             ETTTEEEEECTT-CCE-EEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             eCCCEEEEECCC-CCE-EEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence            667789999984 333 34455556679999998 88733444544443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.29  E-value=2.7e-10  Score=106.96  Aligned_cols=252  Identities=13%  Similarity=0.080  Sum_probs=159.3

Q ss_pred             eEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceecccc-------CCCcEEEEEEe
Q 010390           55 AVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVA-------HQNAIFDLCWI  117 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~s  117 (512)
                      .|.+   +|||++|+++.          .++.|.++|..+.+.             +.++.-       .......+.|+
T Consensus       122 gia~---SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v-------------v~~I~v~g~~r~~~g~~P~~~~~s  185 (426)
T 3c75_H          122 HPVA---AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP-------------IADIELPDAPRFLVGTYQWMNALT  185 (426)
T ss_dssp             EEEE---CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-------------EEEEEETTCCCCCBSCCGGGSEEC
T ss_pred             ceEE---CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE-------------EEEEECCCccccccCCCcceEEEc
Confidence            7888   99999888875          467899999987654             222110       11234568999


Q ss_pred             cCCCEEEEEeC--CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          118 KEDTNILTASG--DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       118 ~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      |||++|+.+..  ++.|.+.|+.+++.+..+....  .  ....|++...+++.+.||.+.+.+...++......     
T Consensus       186 pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-----  256 (426)
T 3c75_H          186 PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-----  256 (426)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-----
T ss_pred             CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-----
Confidence            99999998874  5789999999999888876422  1  33455555777888889999888884443221000     


Q ss_pred             eecccccccccccccccceeccccccc-EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc-cccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMS-ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE-SSSAKETR  273 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~  273 (512)
                                        ..+.....+ ...+.+.+++..++... ..+.|.+.|................ ........
T Consensus       257 ------------------~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~  317 (426)
T 3c75_H          257 ------------------EVFHTEDELLINHPAFSLRSGRLVWPT-YTGKIFQADLTAEGATFRAPIEALTEAERADDWR  317 (426)
T ss_dssp             ------------------CCCSCTTSCBCSCCEECTTTCEEEEEB-TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred             ------------------eeeccCCCceeeEeeecCCCCEEEEEe-CCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence                              000000001 12346788888877755 5789999998755432211000000 00001111


Q ss_pred             ccCeeEEEeCCCCCEEEEEec----------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEec-CC
Q 010390          274 LHGISSLSQDSNGVFLTASCM----------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGS-SD  341 (512)
Q Consensus       274 ~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~-~d  341 (512)
                      ......+++++++..+++...          ++.|.++|..+.+  .+..+...   .....++|+||++ ++++.. .+
T Consensus       318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--vv~~I~vg---~~P~gia~spDg~~~lyv~n~~s  392 (426)
T 3c75_H          318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--RINKIELG---HEIDSINVSQDAEPLLYALSAGT  392 (426)
T ss_dssp             ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEE---EEECEEEECCSSSCEEEEEETTT
T ss_pred             cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe--EEEEEECC---CCcCeEEEccCCCEEEEEEcCCC
Confidence            223345789999988887653          3579999987643  33333221   2355689999999 787777 58


Q ss_pred             CCEEEEecCCCCCC
Q 010390          342 GNAYVWQVNKPQAD  355 (512)
Q Consensus       342 g~i~iw~~~~~~~~  355 (512)
                      +.|.++|+.+.+..
T Consensus       393 ~~VsVID~~t~kvv  406 (426)
T 3c75_H          393 QTLHIYDAATGEEL  406 (426)
T ss_dssp             TEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCCEE
Confidence            99999999988763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.29  E-value=6.6e-10  Score=101.26  Aligned_cols=228  Identities=9%  Similarity=-0.016  Sum_probs=143.4

Q ss_pred             cCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           50 ETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      .....+..|   +|+|+ +++++..++.|..|+....               ...+..+...+..++++++|+++++...
T Consensus        44 ~~~~egp~~---~~~g~~l~~~d~~~~~i~~~~~~g~---------------~~~~~~~~~~~~gl~~d~dG~l~v~~~~  105 (305)
T 3dr2_A           44 ATWSEGPAW---WEAQRTLVWSDLVGRRVLGWREDGT---------------VDVLLDATAFTNGNAVDAQQRLVHCEHG  105 (305)
T ss_dssp             CSSEEEEEE---EGGGTEEEEEETTTTEEEEEETTSC---------------EEEEEESCSCEEEEEECTTSCEEEEETT
T ss_pred             CcCccCCeE---eCCCCEEEEEECCCCEEEEEeCCCC---------------EEEEeCCCCccceeeECCCCCEEEEECC
Confidence            344567777   89998 6777778899999987422               2334446678999999999997666556


Q ss_pred             CCcEEEEeCCCCeeeeccc---Cc-CCCEEEEEeeCCCCCeEEE----EeC-------------CCcEEEEeCCCCCCCC
Q 010390          129 DQTIKIWDAEKKKCTGALM---GH-TGSIKSLCSHPTNSDILVS----GSR-------------DGSFAIWDLRCKSSPK  187 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~---~h-~~~v~~l~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~  187 (512)
                      ++.|.+|+.. ++......   +. ...++.+++.+++ .++++    |..             .+.|..||..+++...
T Consensus       106 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~  183 (305)
T 3dr2_A          106 RRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR  183 (305)
T ss_dssp             TTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred             CCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence            6789999986 54322211   11 1346789999988 77775    332             2456666654433211


Q ss_pred             CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec-----CCeEEEEeccCccceecccCC
Q 010390          188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-----NSIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-----dg~i~iwd~~~~~~~~~~~~~  262 (512)
                                                  .. .......++|+|+++.++++...     ++.|.+|++..........  
T Consensus       184 ----------------------------~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~--  232 (305)
T 3dr2_A          184 ----------------------------MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRH--  232 (305)
T ss_dssp             ----------------------------EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEE--
T ss_pred             ----------------------------Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeE--
Confidence                                        01 12356789999999988876543     2789999987543110000  


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG  342 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg  342 (512)
                            ...........++++++|+ |+++..+ .|.+|+..   ...+..+....   .+..++|+++++.|+.++.++
T Consensus       233 ------~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~---g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          233 ------FASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD---GQLLGHIPTPG---TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             ------EECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTT---SCEEEEEECSS---CCCEEEECTTSCEEEEEETTE
T ss_pred             ------EEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCC---CCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCe
Confidence                  0011123456789999999 4444444 59999863   23333333221   356689999998888777665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.28  E-value=2.4e-09  Score=98.41  Aligned_cols=226  Identities=11%  Similarity=0.021  Sum_probs=138.7

Q ss_pred             ceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390           54 LAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI  132 (512)
Q Consensus        54 ~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i  132 (512)
                      .+..|   +|+ +.+++++..++.|.+||.+++..              ..+ .....+.+++|+++++++++. .++ |
T Consensus        52 egp~~---~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~-~~~~~v~~i~~~~dg~l~v~~-~~g-l  111 (326)
T 2ghs_A           52 EGPTF---DPASGTAWWFNILERELHELHLASGRK--------------TVH-ALPFMGSALAKISDSKQLIAS-DDG-L  111 (326)
T ss_dssp             EEEEE---ETTTTEEEEEEGGGTEEEEEETTTTEE--------------EEE-ECSSCEEEEEEEETTEEEEEE-TTE-E
T ss_pred             cCCeE---eCCCCEEEEEECCCCEEEEEECCCCcE--------------EEE-ECCCcceEEEEeCCCeEEEEE-CCC-E
Confidence            45666   886 55677777788999999876521              112 124679999999999877754 444 9


Q ss_pred             EEEeCCCCeeeecccC----cCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390          133 KIWDAEKKKCTGALMG----HTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA  204 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  204 (512)
                      .+||..+++.......    ....++.++++|++ +++++...+    +...+|.+.+++. .                 
T Consensus       112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~~g~~-~-----------------  172 (326)
T 2ghs_A          112 FLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKV-T-----------------  172 (326)
T ss_dssp             EEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEE-E-----------------
T ss_pred             EEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEeCCcE-E-----------------
Confidence            9999988765332211    12358899999988 665554321    2233443322210 0                 


Q ss_pred             ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc--Cc-cceecccCCCccccccccccccCeeEEE
Q 010390          205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NL-KAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                ...........++|+|+++.++++...++.|.+||+.  ++ ........      .........+..++
T Consensus       173 ----------~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~------~~~~~~~~~p~gi~  236 (326)
T 2ghs_A          173 ----------KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF------IDSTGIKGGMDGSV  236 (326)
T ss_dssp             ----------EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE------EECTTSSSEEEEEE
T ss_pred             ----------EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEE------EECCCCCCCCCeeE
Confidence                      0001123467899999999887776667899999986  44 21100000      00111223467899


Q ss_pred             eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC-CCCCEEEEec
Q 010390          282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-PNASHILSGS  339 (512)
Q Consensus       282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~g~  339 (512)
                      ++++|.+.++...++.|.+||..   ...+..+...  ...+.+++|+ ++++.|++++
T Consensus       237 ~d~~G~lwva~~~~~~v~~~d~~---g~~~~~i~~~--~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          237 CDAEGHIWNARWGEGAVDRYDTD---GNHIARYEVP--GKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             ECTTSCEEEEEETTTEEEEECTT---CCEEEEEECS--CSBEEEEEEESTTSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCEEEEECCC---CCEEEEEECC--CCCcEEEEEecCCCCEEEEEe
Confidence            99999877777677899999972   2233333322  2347788998 8877665443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.18  E-value=1.4e-08  Score=94.11  Aligned_cols=230  Identities=11%  Similarity=0.123  Sum_probs=139.8

Q ss_pred             cCCCEEE-EEeCCCcEEEEeCCCC----eeeeccc------C-cCCCEEEEEeeCCCCCeEEEEeCC------CcEEEEe
Q 010390          118 KEDTNIL-TASGDQTIKIWDAEKK----KCTGALM------G-HTGSIKSLCSHPTNSDILVSGSRD------GSFAIWD  179 (512)
Q Consensus       118 ~~~~~l~-s~~~dg~i~iwd~~~~----~~~~~~~------~-h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd  179 (512)
                      +++++|+ ++..++.|.|+|+.+.    +...++.      . ....-..+.+.|++  +++++..+      |.|.+.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            7787776 5666899999999755    5555552      1 11245567788987  66666555      7899999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe------------------ec
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS------------------AV  241 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g------------------~~  241 (512)
                      ..+.+........                        ......-..+-|+|+++.++++.                  ..
T Consensus       171 ~~T~~v~~~~~~~------------------------~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~  226 (462)
T 2ece_A          171 HYSFEPLGKWEID------------------------RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY  226 (462)
T ss_dssp             TTTCCEEEECCSB------------------------CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred             CCCCeEEEEEccC------------------------CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence            8876644322110                        01112234678899999888753                  23


Q ss_pred             CCeEEEEeccCccceecccCCCccccccccccccCeeEEE--eCCCCCEEEEEec------CCeEEEEEcccCCCCceEe
Q 010390          242 NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS--QDSNGVFLTASCM------DHRIYLYNVLQLDKGPIQH  313 (512)
Q Consensus       242 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~  313 (512)
                      +..|.+||+.+.+...+...         .........+.  ++|+++++++++.      +++|.+|....+.......
T Consensus       227 ~d~V~v~D~~~~k~~~tI~v---------g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v  297 (462)
T 2ece_A          227 GNRIHFWDLRKRKRIHSLTL---------GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV  297 (462)
T ss_dssp             CCEEEEEETTTTEEEEEEES---------CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEec---------CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence            68999999998755443211         10112233444  4999999888774      5688877654321111111


Q ss_pred             e--eece--------------eceeEEEEEECCCCCEEEEecC-CCCEEEEecCCCCCCC--cee-cc-------c----
Q 010390          314 F--SGCR--------------IESFYVKSEICPNASHILSGSS-DGNAYVWQVNKPQADP--IKL-KS-------H----  362 (512)
Q Consensus       314 ~--~~~~--------------~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~--~~~-~~-------h----  362 (512)
                      +  ....              .......+.+|+||++|.++.. .+.|.+||+.......  ... .+       |    
T Consensus       298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~  377 (462)
T 2ece_A          298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH  377 (462)
T ss_dssp             EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred             EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence            1  1100              0133556899999999976654 6789999986443211  111 11       0    


Q ss_pred             --cCCeEEEEeCCCCCCeEEEEe
Q 010390          363 --DGEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       363 --~~~v~~v~~~~~~~~~l~s~~  383 (512)
                        .+.-..++++||| ++|+.+.
T Consensus       378 ~~~ggPr~~~lSpDG-k~LyVaN  399 (462)
T 2ece_A          378 KLTGAPQMLEISRDG-RRVYVTN  399 (462)
T ss_dssp             CCCSCCCCEEECTTS-SEEEEEC
T ss_pred             cCCCCCCEEEEcCCC-CEEEEEc
Confidence              0135789999999 6776666

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.16  E-value=1.6e-08  Score=93.70  Aligned_cols=241  Identities=12%  Similarity=0.065  Sum_probs=145.6

Q ss_pred             CCCcEEEE-eeCCCcEEEEECCCCCCccccccccccccceecc-------ccCCCcEEEEEEecCCCEEEEEeCC-----
Q 010390           63 KNSHIFAV-SDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-------VAHQNAIFDLCWIKEDTNILTASGD-----  129 (512)
Q Consensus        63 ~~~~~lat-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~V~~l~~s~~~~~l~s~~~d-----  129 (512)
                      +++++|++ |..++.|.|+|+.+.....         +....+       +.....-..+..+|+| .++++..+     
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p---------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~  162 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREP---------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEG  162 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSC---------EEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCc---------eeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence            77876655 5678899999986432111         111211       1111245667888999 77766555     


Q ss_pred             -CcEEEEeCCCCeeeecccCcCC---CEEEEEeeCCCCCeEEEEe-------------------CCCcEEEEeCCCCCCC
Q 010390          130 -QTIKIWDAEKKKCTGALMGHTG---SIKSLCSHPTNSDILVSGS-------------------RDGSFAIWDLRCKSSP  186 (512)
Q Consensus       130 -g~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~~-------------------~dg~i~vwd~~~~~~~  186 (512)
                       |.|.+.|..+.+.+.++.....   .-..+-|+|++ +.+++..                   .+.+|.+||+.+.+..
T Consensus       163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~  241 (462)
T 2ece_A          163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI  241 (462)
T ss_dssp             CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred             CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence             7899999999999888863222   23457789988 7777774                   3679999999864322


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEE--eecCCEEEEEee-----cCCeEEEEeccCccceecc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY--LKDEVSIATASA-----VNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~g~-----~dg~i~iwd~~~~~~~~~~  259 (512)
                      ...                         ...........+.|  +|+++++++++.     .+++|.+|..+.+......
T Consensus       242 ~tI-------------------------~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          242 HSL-------------------------TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             EEE-------------------------ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             eEE-------------------------ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence            111                         00001123445555  999999998887     7888988776543221111


Q ss_pred             c--CCCcc---cc----ccccccccCeeEEEeCCCCCEEEEEec-CCeEEEEEcccCCC-CceEeeeec-----------
Q 010390          260 A--WPHAE---SS----SAKETRLHGISSLSQDSNGVFLTASCM-DHRIYLYNVLQLDK-GPIQHFSGC-----------  317 (512)
Q Consensus       260 ~--~~~~~---~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~-~~~~~~~~~-----------  317 (512)
                      .  .+...   ..    ..+.........+.+++||++|+++.. .+.|.+||+..... ..+..+...           
T Consensus       297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G  376 (462)
T 2ece_A          297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG  376 (462)
T ss_dssp             EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred             EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence            0  00000   00    000011245788999999999998885 58999999864321 222222211           


Q ss_pred             -eeceeEEEEEECCCCCEEEEec
Q 010390          318 -RIESFYVKSEICPNASHILSGS  339 (512)
Q Consensus       318 -~~~~~~~~~~~s~~~~~l~~g~  339 (512)
                       ........++++|||++|+++.
T Consensus       377 ~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          377 HKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ccCCCCCCEEEEcCCCCEEEEEc
Confidence             0001234589999999998876

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.13  E-value=1.7e-09  Score=100.26  Aligned_cols=245  Identities=8%  Similarity=-0.026  Sum_probs=147.3

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeC-----CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDE-----DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      +|-..+.+|++   +++|+++++...     ++.|.+||..+++......       .-.....+...+..+++++++..
T Consensus        64 ~~~~~p~gv~~---d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~-------~~~~~~~~~~~~~~v~vd~~~g~  133 (343)
T 2qe8_A           64 ITFDTVLGIKS---DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIY-------LPPPITLSNSFVNDLAVDLIHNF  133 (343)
T ss_dssp             CCCSCEEEEEE---CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEE-------CCTTTSCTTCCCCEEEEETTTTE
T ss_pred             cceeEeeEEEE---cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEE-------CChhhcccccccceEEEecCCCE
Confidence            45667888888   999987766533     5789999987664210000       00001123346789999986545


Q ss_pred             E-EEEe---CCCcEEEEeCCCCeeeecccCcCCCEE-EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          123 I-LTAS---GDQTIKIWDAEKKKCTGALMGHTGSIK-SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       123 l-~s~~---~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      + ++..   .++.|.+||+.+++..+.+.+|..... ...+.+++ ..+.+.+.++.++.|..                 
T Consensus       134 ~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~~-----------------  195 (343)
T 2qe8_A          134 VYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPHL-----------------  195 (343)
T ss_dssp             EEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETT-EECBEECTTSCEECCCC-----------------
T ss_pred             EEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECC-EEEEeccCCCceeceec-----------------
Confidence            4 4544   578999999998887776655432110 13344455 56666777777766642                 


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                              .+..++++|+++.++++......+..++........ .............++....
T Consensus       196 ------------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~g~p  250 (343)
T 2qe8_A          196 ------------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQ-LTDAELGSKIERYSEKPIC  250 (343)
T ss_dssp             ------------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTT-CCHHHHHTTCEEEEECCSC
T ss_pred             ------------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCC-CChhhhhcceEecccCCCC
Confidence                                    367899999999888866544566666543211000 0000000000111233356


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                      ..++++++|.++++...++.|.+||..+++   +..+...........+++.++++++++.+..+.+.+|.
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~---~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITSADRA---YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEETTTTE---EEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEECCCCC---EEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            789999999988888889999999973322   22222222234567899999988887776555444443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.10  E-value=1.3e-08  Score=95.63  Aligned_cols=289  Identities=6%  Similarity=-0.015  Sum_probs=158.6

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      ++..+++++.++.|..+|.++++..-.......    ..........+.+.- ..++..++.++.++.|..+|..+++.+
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~  126 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEK----DGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVA  126 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-------CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccc----cccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence            456777888899999999987754211000000    000000012232222 124567888889999999999999887


Q ss_pred             ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390          144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI  223 (512)
Q Consensus       144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (512)
                      ................  + ..++.++.++.|..+|..+++..........                  .......    
T Consensus       127 W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~------------------~~~~~~~----  181 (376)
T 3q7m_A          127 WQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMP------------------SLSLRGE----  181 (376)
T ss_dssp             EEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----------------------CCC----
T ss_pred             EEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCC------------------ceeecCC----
Confidence            7665433221122222  3 5788888899999999987764332111000                  0000000    


Q ss_pred             EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC--CCCEEEEEecCCeEEEE
Q 010390          224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS--NGVFLTASCMDHRIYLY  301 (512)
Q Consensus       224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~  301 (512)
                      ......  +..+++ +..++.|..+|..+++................    ..+..+...|  .+..+++++.++.+..+
T Consensus       182 ~~~~~~--~~~v~~-g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~v~~~~~~g~l~~~  254 (376)
T 3q7m_A          182 SAPTTA--FGAAVV-GGDNGRVSAVLMEQGQMIWQQRISQATGSTEI----DRLSDVDTTPVVVNGVVFALAYNGNLTAL  254 (376)
T ss_dssp             CCCEEE--TTEEEE-CCTTTEEEEEETTTCCEEEEEECCC---------------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred             CCcEEE--CCEEEE-EcCCCEEEEEECCCCcEEEEEecccCCCCccc----ccccccCCCcEEECCEEEEEecCcEEEEE
Confidence            111111  334444 55789999999998887665432211000000    0000000111  24567778889999999


Q ss_pred             EcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec-cccCCeEEEEeCCCCCCeEE
Q 010390          302 NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK-SHDGEVTAVNWCPNEAGKIV  380 (512)
Q Consensus       302 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~  380 (512)
                      |..+++.  +.......    ...+..  ++..|+.++.++.|..+|..+++.. .... .....+......  + ..|+
T Consensus       255 d~~tG~~--~w~~~~~~----~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~-w~~~~~~~~~~~~~~~~--~-~~l~  322 (376)
T 3q7m_A          255 DLRSGQI--MWKRELGS----VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTL-WTQSDLLHRLLTSPVLY--N-GNLV  322 (376)
T ss_dssp             ETTTCCE--EEEECCCC----EEEEEE--ETTEEEEEETTCCEEEEETTTCCEE-EEECTTTTSCCCCCEEE--T-TEEE
T ss_pred             ECCCCcE--EeeccCCC----CCCceE--ECCEEEEEcCCCeEEEEECCCCcEE-EeecccCCCcccCCEEE--C-CEEE
Confidence            9866432  21111111    122222  3667777888899999999888653 2222 112222222232  3 5788


Q ss_pred             EEeCCCcEEEEeCCCCccccc
Q 010390          381 TSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       381 s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      .++.+|.|.++|..+++.+..
T Consensus       323 v~~~~g~l~~~d~~tG~~~~~  343 (376)
T 3q7m_A          323 VGDSEGYLHWINVEDGRFVAQ  343 (376)
T ss_dssp             EECTTSEEEEEETTTCCEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEE
Confidence            899999999999999987654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.08  E-value=2.3e-09  Score=98.93  Aligned_cols=260  Identities=13%  Similarity=0.029  Sum_probs=153.4

Q ss_pred             eEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceeccccC-------CCcEEEEEEe
Q 010390           55 AVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-------QNAIFDLCWI  117 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~s  117 (512)
                      .+.+   +|||++++++.          .++.|.+||..+.+.             +.++...       ......++++
T Consensus        69 ~i~~---spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-------------v~~I~v~~~~~~~~g~~P~~ia~S  132 (368)
T 1mda_H           69 LAVA---GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-------------IADIELPDAPRFSVGPRVHIIGNC  132 (368)
T ss_dssp             EEEE---CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-------------EEEEEETTSCSCCBSCCTTSEEEC
T ss_pred             ceEE---CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-------------EEEEECCCccccccCCCcceEEEc
Confidence            7888   99999888886          368899999988754             3333211       1234578999


Q ss_pred             cCCCEEEEEeC--CCcEEE--EeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC-----CCCCCC
Q 010390          118 KEDTNILTASG--DQTIKI--WDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC-----KSSPKS  188 (512)
Q Consensus       118 ~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~  188 (512)
                      |||++|+.+..  +..|.+  +|+.+   +..+... +.   +.+.|++...+++.+.||.+.+.|+.+     ++....
T Consensus       133 pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~  205 (368)
T 1mda_H          133 ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence            99999998875  467888  99877   3334211 11   224566667777888899998888875     221110


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc-
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS-  267 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-  267 (512)
                      ..                       ........+.   . .+++..++.+. . +.|.+.|+................. 
T Consensus       206 ~t-----------------------~~i~vg~~P~---~-~~~~~~~~~vs-~-~~V~viD~~~~~~~v~~~~~~~~~~~  256 (368)
T 1mda_H          206 CT-----------------------GAQNCSSQAA---Q-ANYPGMLVWAV-A-SSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             SC-----------------------TTSCBCSCCE---E-ETTTTEEEECB-S-SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             ee-----------------------eeeeCCCCcc---c-cccCCEEEEEc-C-CEEEEEECCCCcceEEEEEEeccccc
Confidence            00                       0001112232   2 56666666655 4 8999999875432211111000000 


Q ss_pred             ccccccccCeeEEEeCCCCCEEEEEec-C--------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE-EEE
Q 010390          268 SAKETRLHGISSLSQDSNGVFLTASCM-D--------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH-ILS  337 (512)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~  337 (512)
                      ............++++++++.++++.. .        +.+.++|+.+.+  .+..+...   .....++|+|||++ +++
T Consensus       257 ~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~--vv~~i~vg---~~p~gi~~s~Dg~~l~va  331 (368)
T 1mda_H          257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--TSGPISNG---HDSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--EEECCEEE---EEECEEEECCSSSCEEEE
T ss_pred             cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe--EEEEEECC---CCcceEEECCCCCEEEEE
Confidence            000011122333789999998887643 2        356699987643  23333222   23556999999984 555


Q ss_pred             ec-CCCCEEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390          338 GS-SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP  373 (512)
Q Consensus       338 g~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~  373 (512)
                      .. .++.|.++|+.+.+.. ..+... .....+++.+
T Consensus       332 ~~~~~~~VsVID~~t~kvv-~~I~vg-~~P~~i~~~~  366 (368)
T 1mda_H          332 NSAGTEVLDIYDAASDQDQ-SSVELD-KGPESLSVQN  366 (368)
T ss_dssp             EETTTTEEEEEESSSCEEE-EECCCC-SCCCEEECCC
T ss_pred             ccCCCCeEEEEECCCCcEE-EEEECC-CCCCEEEeec
Confidence            55 5899999999987653 333322 2344555543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.07  E-value=9.2e-08  Score=85.08  Aligned_cols=257  Identities=9%  Similarity=0.007  Sum_probs=149.8

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE-EeCCCcEEEEeCCCCeee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT-ASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~  143 (512)
                      |.+|..+.. +.|+.++++......      .+.  ...+......+..++|++++..|+. -..++.|.++++......
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~------~~~--~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~   71 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKK------TEA--KAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT   71 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCG------GGC--EEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE
T ss_pred             CcEEEEEcC-CeEEEEEecCccccc------ccc--eeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE
Confidence            345555553 478889887643210      000  0011112245789999997666664 445789999998766443


Q ss_pred             ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390          144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI  223 (512)
Q Consensus       144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  223 (512)
                      ..+.........+++.++++.++++-...+.|.++++.......                           .........
T Consensus        72 ~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~---------------------------~~~~~~~~P  124 (267)
T 1npe_A           72 TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV---------------------------LFDTGLVNP  124 (267)
T ss_dssp             EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---------------------------EECSSCSSE
T ss_pred             EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE---------------------------EEECCCCCc
Confidence            33332234678999999764666666667899999986432100                           000111356


Q ss_pred             EEEEEeecCCEEEEEeec--CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEE
Q 010390          224 TSVLYLKDEVSIATASAV--NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYL  300 (512)
Q Consensus       224 ~~~~~~~~~~~l~~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  300 (512)
                      ..++++|++..++++...  .+.|..+++........           ..........+++++++..|+.+. ..+.|.+
T Consensus       125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~-----------~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~  193 (267)
T 1npe_A          125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL-----------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE-----------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE-----------EECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence            889999977777665533  46888888764322110           011123578899999877666555 5689999


Q ss_pred             EEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc-cCCeEEEEeCCCC
Q 010390          301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH-DGEVTAVNWCPNE  375 (512)
Q Consensus       301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~v~~~~~~  375 (512)
                      +|......  ......   ......++.. .+.++++....+.|.++|..+++.. ..+... ......+++.|++
T Consensus       194 ~~~~g~~~--~~~~~~---~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~-~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          194 LNPAQPGR--RKVLEG---LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM-DTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             EETTEEEE--EEEEEC---CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE-EEECCSSCCCCCCEEEECSC
T ss_pred             EecCCCce--EEEecC---CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce-EEEccccccccceeeecCcc
Confidence            99854221  111111   1122345554 3444455555688999998876653 333322 2246677777765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.05  E-value=4.4e-09  Score=106.52  Aligned_cols=325  Identities=9%  Similarity=0.010  Sum_probs=170.5

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcE-EEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAI-FDLCWIKEDTNILTASGDQTIKIWDAEKKKC  142 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  142 (512)
                      +..+++++.++.|.-+|..+++..-.......    ........ ..+ ..+..  ++..|+.++.|+.|..+|..+|+.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~  143 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSD----RHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQR  143 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCC----GGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCC----ccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCE
Confidence            55677777788999999988754221100000    00000000 000 11222  356788888999999999999998


Q ss_pred             eecccCc--CCCEEEEEeeC--CCCCeEEEEe------CCCcEEEEeCCCCCCCCCccccc----eeeecc-cccccccc
Q 010390          143 TGALMGH--TGSIKSLCSHP--TNSDILVSGS------RDGSFAIWDLRCKSSPKSNCAES----FVFSSA-VVKGAHLL  207 (512)
Q Consensus       143 ~~~~~~h--~~~v~~l~~~~--~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~  207 (512)
                      +..+...  ......+...|  .+ ..++.++      .+|.|..||..+++..-......    ...... ........
T Consensus       144 ~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          144 AWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             EEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             eeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            8766532  11111111111  12 3444443      36899999999887654321100    000000 00000000


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCC-------------------eEEEEeccCccceecccCCCccccc
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS-------------------IVKFWDTRNLKAQITQAWPHAESSS  268 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~  268 (512)
                       ..........+......+++.++...+++ +..++                   .|..+|.++++........+...- 
T Consensus       223 -~g~~w~~~~~g~~~w~~~~~d~~~~~vy~-~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w-  299 (689)
T 1yiq_A          223 -FGDAYVEQGGGGTAWDSFAYDPELNLLYI-GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW-  299 (689)
T ss_dssp             -CSSTHHHHCEECCCCSCEEEETTTTEEEE-ECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS-
T ss_pred             -CCceeeecCCCCccccceeEcCCCCEEEE-eCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc-
Confidence             00000000011122236788888777776 43454                   499999999998876532211000 


Q ss_pred             cccccccCeeEEEeCCCCC---EEEEEecCCeEEEEEcccCCCCceEeeee-----c-------------------eece
Q 010390          269 AKETRLHGISSLSQDSNGV---FLTASCMDHRIYLYNVLQLDKGPIQHFSG-----C-------------------RIES  321 (512)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~-------------------~~~~  321 (512)
                      .. .....+.......+|+   .++.++.+|.++++|..+++......+..     .                   ....
T Consensus       300 d~-~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~  378 (689)
T 1yiq_A          300 DY-TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR  378 (689)
T ss_dssp             CC-CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred             cc-cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence            00 0011111122222554   78889999999999987654321000000     0                   0000


Q ss_pred             -----------eEEEEEECCCCCEEEEecC---------------------------------------------CCCEE
Q 010390          322 -----------FYVKSEICPNASHILSGSS---------------------------------------------DGNAY  345 (512)
Q Consensus       322 -----------~~~~~~~s~~~~~l~~g~~---------------------------------------------dg~i~  345 (512)
                                 ....++|+|+..++++...                                             +|.|+
T Consensus       379 ~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~  458 (689)
T 1yiq_A          379 NLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI  458 (689)
T ss_dssp             EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred             eEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence                       0112678888777776422                                             37799


Q ss_pred             EEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          346 VWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       346 iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      .||+.+++.. .....+ .++....+...+ .+++.++.||.|+.||.++|+.+-.+.
T Consensus       459 A~D~~tG~~~-W~~~~~-~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          459 AWDPVKQQAA-WEVPYV-TIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             EEETTTTEEE-EEEEES-SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCeE-eEccCC-CCccCccceECC-CEEEEECCCCcEEEEECCCCccceeee
Confidence            9999888763 233222 233333455556 689999999999999999999886543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.04  E-value=2.3e-09  Score=108.28  Aligned_cols=324  Identities=9%  Similarity=-0.021  Sum_probs=175.0

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG  144 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  144 (512)
                      +..|++++.++.|.-+|..+++..-.........  .............+.+  ++..|+.++.|+.|..+|..+|+.+.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~--~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W  152 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRS--TGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVW  152 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGG--GGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcc--ccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            4556666678899999988775421110000000  0000000000012233  45678888899999999999999887


Q ss_pred             cccCc-C----CCEEE-EEeeCCCCCeEEEEeC------CCcEEEEeCCCCCCCCCccccceeeeccc-c----cccccc
Q 010390          145 ALMGH-T----GSIKS-LCSHPTNSDILVSGSR------DGSFAIWDLRCKSSPKSNCAESFVFSSAV-V----KGAHLL  207 (512)
Q Consensus       145 ~~~~h-~----~~v~~-l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~  207 (512)
                      .+..+ .    ..+.+ ....  + ..++.++.      ++.|+.+|..+++................ .    .+....
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~--~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          153 HQNTFEGQKGSLTITGAPRVF--K-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             EEETTTTCCSSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             eecCCcCcCcCcccccCcEEE--C-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            77644 1    11211 1111  3 34555443      68999999998876543211100000000 0    000000


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCC-------------------eEEEEeccCccceecccCCCccccc
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS-------------------IVKFWDTRNLKAQITQAWPHAESSS  268 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~  268 (512)
                      ..................+++++++..+++.. .++                   .|..+|.++++............- 
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~-~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w-  307 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGT-GNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW-  307 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEEC-CCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS-
T ss_pred             cccCceeEeCCCcccccceeEcCCCCEEEEEC-CCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc-
Confidence            00000000001222334678888888777643 342                   599999999988776432211000 


Q ss_pred             cccccccCeeEEEeCCCC---CEEEEEecCCeEEEEEcccCCCCceEeeeecee---------cee--------------
Q 010390          269 AKETRLHGISSLSQDSNG---VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI---------ESF--------------  322 (512)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~--------------  322 (512)
                      .... ......+....+|   ..++.++.+|.++++|..+++.  +........         ...              
T Consensus       308 d~~~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~--l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~  384 (677)
T 1kb0_A          308 DYTS-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF--ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD  384 (677)
T ss_dssp             CCCC-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE--EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred             cccc-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE--eccccccccCcccccCCCCceeeccccCcCCCccE
Confidence            0000 1112222333467   6788999999999999876543  211110000         000              


Q ss_pred             ----------EEEEEECCCCCEEEEecC-------------------------------------------CCCEEEEec
Q 010390          323 ----------YVKSEICPNASHILSGSS-------------------------------------------DGNAYVWQV  349 (512)
Q Consensus       323 ----------~~~~~~s~~~~~l~~g~~-------------------------------------------dg~i~iw~~  349 (512)
                                ...++++|++.++++...                                           .|.|..||+
T Consensus       385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~  464 (677)
T 1kb0_A          385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP  464 (677)
T ss_dssp             CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred             ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence                      013678898888876532                                           267999999


Q ss_pred             CCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          350 NKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       350 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      .+++... .. .+..++....+..++ .+++.++.||.+++||..+++.+..+.
T Consensus       465 ~tG~~~W-~~-~~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          465 VAQKAAW-SV-EHVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             TTTEEEE-EE-EESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCcEEe-ec-CCCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCceeeeee
Confidence            8887632 22 233444455566666 688889999999999999999887654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.04  E-value=1e-08  Score=103.65  Aligned_cols=294  Identities=11%  Similarity=0.061  Sum_probs=163.8

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC-C----CcEEEEEEecCCCEEEEEeC------CCcE
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-Q----NAIFDLCWIKEDTNILTASG------DQTI  132 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~----~~V~~l~~s~~~~~l~s~~~------dg~i  132 (512)
                      ++..|++++.|+.|..+|..+++..-             .+..+ .    ..+.+--.. .+..++.++.      ++.|
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W-------------~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v  192 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVW-------------HQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYI  192 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEE-------------EEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEe-------------eecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEE
Confidence            45678888889999999998875421             11111 0    111110001 2345555443      6899


Q ss_pred             EEEeCCCCeeeecccCcCC--------------------------------CEEEEEeeCCCCCeEEEEeCCC-------
Q 010390          133 KIWDAEKKKCTGALMGHTG--------------------------------SIKSLCSHPTNSDILVSGSRDG-------  173 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~h~~--------------------------------~v~~l~~~~~~~~~l~s~~~dg-------  173 (512)
                      +.+|..+|+.+..+.....                                ....+++.|++ .+++.+..++       
T Consensus       193 ~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~  271 (677)
T 1kb0_A          193 TAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKV  271 (677)
T ss_dssp             EEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHH
T ss_pred             EEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCC
Confidence            9999999998766543211                                11246788877 6777776654       


Q ss_pred             ------------cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC--EEEEEe
Q 010390          174 ------------SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV--SIATAS  239 (512)
Q Consensus       174 ------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~g  239 (512)
                                  .|..+|..+++.........         .        ....... .....-+....+|+  .+++.+
T Consensus       272 ~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~---------~--------d~wd~~~-~~~p~l~~~~~dG~~~~~l~~~  333 (677)
T 1kb0_A          272 RSPKGGDNLYLASIVALDPDTGKYKWHYQETP---------G--------DNWDYTS-TQPMILADIKIAGKPRKVILHA  333 (677)
T ss_dssp             HSTTCCCCTTTTEEEEECTTTCCEEEEEESST---------T--------CCSCCCC-CSCCEEEEEEETTEEEEEEEEC
T ss_pred             CCccCCCCeeeEEEEEEECCCCCEEEEEecCC---------C--------ccccccc-CCCcEEEecccCCcEeeEEEEE
Confidence                        48888888776433211100         0        0000000 11222223334663  444457


Q ss_pred             ecCCeEEEEeccCccceecccCCCcccccccc--------------c--------cc--cCeeEEEeCCCCCEEEEEecC
Q 010390          240 AVNSIVKFWDTRNLKAQITQAWPHAESSSAKE--------------T--------RL--HGISSLSQDSNGVFLTASCMD  295 (512)
Q Consensus       240 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------------~--------~~--~~i~~~~~~~~~~~l~~~~~d  295 (512)
                      +.+|.|+++|..+++.+...............              .        ..  ..-..++++|+..++++...+
T Consensus       334 ~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~  413 (677)
T 1kb0_A          334 PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQN  413 (677)
T ss_dssp             CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChh
Confidence            78999999999999877554322110000000              0        00  001257889988888776432


Q ss_pred             -------------------------------------------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390          296 -------------------------------------------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA  332 (512)
Q Consensus       296 -------------------------------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  332 (512)
                                                                 |.|..||+.+++.  +-.....   .......+...+
T Consensus       414 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~~---~~~~~g~~~~~g  488 (677)
T 1kb0_A          414 VPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA--AWSVEHV---SPWNGGTLTTAG  488 (677)
T ss_dssp             CCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE--EEEEEES---SSCCCCEEEETT
T ss_pred             cceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE--EeecCCC---CCCcCcceEeCC
Confidence                                                       6788999866432  2222111   111123345677


Q ss_pred             CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC----------------CCcEEEEeCCC
Q 010390          333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD----------------DYTVRLWSLEN  395 (512)
Q Consensus       333 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~----------------dg~i~vwd~~~  395 (512)
                      ..++.++.||.+++||..+++.......++...-.-+.|..+|..+++..+.                .+.+.+|.+..
T Consensus       489 ~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          489 NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             CEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            8888899999999999999887433333443333445566777445554332                36777787764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.00  E-value=2.8e-10  Score=106.44  Aligned_cols=223  Identities=10%  Similarity=0.012  Sum_probs=118.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      ++..|++++.||.|+.||..+|+.+..+..  +.+.+..+..++ ..+++++.||.|+.||..+++..........    
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~----   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP----   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHH----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCc----
Confidence            577899999999999999999999888775  455554455555 6788888999999999987765432211000    


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                      .. ....++.    . .+..+++ ++.++.|+.||.++++.......           +.    
T Consensus        81 ----------------~~-~~~sp~~----~-~~~~v~~-g~~dg~v~a~D~~tG~~~w~~~~-----------~~----  122 (369)
T 2hz6_A           81 ----------------EL-VQASPCR----S-SDGILYM-GKKQDIWYVIDLLTGEKQQTLSS-----------AF----  122 (369)
T ss_dssp             ----------------HH-HTTCSCC----------CCC-CEEEEEEEEECCC---------------------------
T ss_pred             ----------------cc-cccCceE----e-cCCEEEE-EeCCCEEEEEECCCCcEEEEecC-----------CC----
Confidence                            00 0000110    1 2233443 55789999999999887654321           11    


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC---CEEEEecCCCCEEEEecCCCCCC
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA---SHILSGSSDGNAYVWQVNKPQAD  355 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~g~~dg~i~iw~~~~~~~~  355 (512)
                      ...++|++..+++++.++.|+.||..+++..-.......      ...+++.+.   ..+++++.||.|+.||..+++..
T Consensus       123 ~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          123 ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             ----------EEEEEEEEEEECCCSSSSSCCCEEEEEEE------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc------cCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            133456788899999999999999877554322222111      112333432   56777888999999999988753


Q ss_pred             CceeccccCCeEE-EEeCCCCCCeE----EEEeCCCcEEEEeCCCCc
Q 010390          356 PIKLKSHDGEVTA-VNWCPNEAGKI----VTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       356 ~~~~~~h~~~v~~-v~~~~~~~~~l----~s~~~dg~i~vwd~~~~~  397 (512)
                       .... ...++.. ..+++++ ...    +.+  ++.++.+|..+|+
T Consensus       197 -W~~~-~~~pv~~~~~~~~dg-~~~v~~~~~~--~~~l~~ld~~tG~  238 (369)
T 2hz6_A          197 -WIQN-YASPVVAFYVWQREG-LRKVMHINVA--VETLRYLTFMSGE  238 (369)
T ss_dssp             -EEEE-CSSCEEEEEECTTSS-CEEECCEEEE--HHHHHHHHHHHHH
T ss_pred             -EEec-CCCceEEEEEecCCc-eEeccceeec--ccceeeeehhcCC
Confidence             3333 3344443 4455665 321    112  4456677776665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.97  E-value=2.4e-08  Score=101.08  Aligned_cols=287  Identities=9%  Similarity=0.073  Sum_probs=154.6

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe------CCCcEEEEeC
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS------GDQTIKIWDA  137 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~------~dg~i~iwd~  137 (512)
                      ++..|++++.||.|..+|.++++..-..... ...  .........++.     .++ .++.++      .+|.|+.||.
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~-~~~--~~~~~~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~  190 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTR-ADH--KRSYTITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDA  190 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECC-SCT--TSCCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEET
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCc-CCC--CCCccccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEEC
Confidence            3567888889999999999888642111000 000  000000111111     144 444443      3789999999


Q ss_pred             CCCeeeecccCc-------------------------------CCCEEEEEeeCCCCCeEEEEeCCCc------------
Q 010390          138 EKKKCTGALMGH-------------------------------TGSIKSLCSHPTNSDILVSGSRDGS------------  174 (512)
Q Consensus       138 ~~~~~~~~~~~h-------------------------------~~~v~~l~~~~~~~~~l~s~~~dg~------------  174 (512)
                      .+|+.+..+...                               ......+++.|+. .+++.+..++.            
T Consensus       191 ~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~g  269 (689)
T 1yiq_A          191 ETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKG  269 (689)
T ss_dssp             TTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCS
T ss_pred             CCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCC
Confidence            999987665421                               0011256788877 77888877763            


Q ss_pred             -------EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC--EEEEEeecCCeE
Q 010390          175 -------FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV--SIATASAVNSIV  245 (512)
Q Consensus       175 -------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~g~~dg~i  245 (512)
                             |..+|..+++..-......           +      ..... .....+.......++.  .+++.++.+|.+
T Consensus       270 d~~y~~~v~AlD~~TG~~~W~~~~~~-----------~------d~wd~-~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l  331 (689)
T 1yiq_A          270 DNLFLSSIVAVNADTGEYVWHYQTTP-----------G------DAWDY-TATQHMILAELPIDGKPRKVLMQAPKNGFF  331 (689)
T ss_dssp             CCTTTTEEEEEETTTCCEEEEEESST-----------T------CCSCC-CCCSCEEEEEEEETTEEEEEEEECCTTSEE
T ss_pred             CceeeeeEEEEEccCCceeEeeecCC-----------c------ccccc-cCCCCcEEEeeccCCcEEEEEEEECCCCeE
Confidence                   8889988876543221100           0      00000 0011122222223443  244457789999


Q ss_pred             EEEeccCccceecccCCCcccccc-----------------cccc-----------ccCeeEEEeCCCCCEEEEEec---
Q 010390          246 KFWDTRNLKAQITQAWPHAESSSA-----------------KETR-----------LHGISSLSQDSNGVFLTASCM---  294 (512)
Q Consensus       246 ~iwd~~~~~~~~~~~~~~~~~~~~-----------------~~~~-----------~~~i~~~~~~~~~~~l~~~~~---  294 (512)
                      +++|.++++.+.........-...                 ....           ...-..++++|+..++++...   
T Consensus       332 ~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~  411 (689)
T 1yiq_A          332 YVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMS  411 (689)
T ss_dssp             EEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECC
T ss_pred             EEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccc
Confidence            999999998764322111000000                 0000           001223788888887776532   


Q ss_pred             ------------------------------------------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390          295 ------------------------------------------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA  332 (512)
Q Consensus       295 ------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  332 (512)
                                                                +|.|..||+.+++.  +-......   ......+...+
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~~~---~~~~g~~~tag  486 (689)
T 1yiq_A          412 AYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA--AWEVPYVT---IFNGGTLSTAG  486 (689)
T ss_dssp             EEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE--EEEEEESS---SCCCCEEEETT
T ss_pred             eeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe--EeEccCCC---CccCccceECC
Confidence                                                      36788888866432  22222111   11112344577


Q ss_pred             CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe
Q 010390          333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       333 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~  383 (512)
                      .+++.|+.||.++.||.++++.......++.....-+.|..+|.+++++.+
T Consensus       487 glvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          487 NLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence            889999999999999999998743222233322344667778855666543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.94  E-value=1.7e-10  Score=107.96  Aligned_cols=258  Identities=10%  Similarity=-0.017  Sum_probs=130.6

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      ++..+++++.||.|+.||..+++.             +-++..  +.+.+..+..++..+++++.||.|+.||..+++.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~-------------~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~   72 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI-------------KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL   72 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE-------------EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE-------------EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence            678899999999999999988754             222222  34444445567778888889999999999999876


Q ss_pred             ecccCcCC-CEE-EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccc
Q 010390          144 GALMGHTG-SIK-SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM  221 (512)
Q Consensus       144 ~~~~~h~~-~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (512)
                      ..+..+.. .+. +..+. .+ ..+++++.|+.|+.||..+++.......                           +. 
T Consensus        73 w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~---------------------------~~-  122 (369)
T 2hz6_A           73 TKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSS---------------------------AF-  122 (369)
T ss_dssp             EECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------------
T ss_pred             eeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecC---------------------------CC-
Confidence            65543321 110 00111 23 5677888899999999998876543211                           00 


Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC---CEEEEEecCCeE
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG---VFLTASCMDHRI  298 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i  298 (512)
                         ...++|++..+++ ++.++.|+.||.++++......         ..    ......+..+.   ..+++++.+|.|
T Consensus       123 ---~~~~~p~~~~v~~-~~~dg~v~a~d~~tG~~~W~~~---------~~----~~~~~~~~~~~~~~~~v~~~~~dg~v  185 (369)
T 2hz6_A          123 ---ADSLSPSTSLLYL-GRTEYTITMYDTKTRELRWNAT---------YF----DYAASLPEDDVDYKMSHFVSNGDGLV  185 (369)
T ss_dssp             -------------EEE-EEEEEEEECCCSSSSSCCCEEE---------EE----EECCBCCCCCTTCCCCEEEEETSCEE
T ss_pred             ---cccccccCCEEEE-EecCCEEEEEECCCCCEEEeEe---------cc----cccCccccCCccccceEEEECCCCEE
Confidence               1233456666665 4578999999999987655421         00    11223333332   457778899999


Q ss_pred             EEEEcccCCCCceEeeeeceeceeEE-EEEECCCCCEE----EEecCCCCEEEEecCCCC----CCCceeccccCCeEEE
Q 010390          299 YLYNVLQLDKGPIQHFSGCRIESFYV-KSEICPNASHI----LSGSSDGNAYVWQVNKPQ----ADPIKLKSHDGEVTAV  369 (512)
Q Consensus       299 ~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~l----~~g~~dg~i~iw~~~~~~----~~~~~~~~h~~~v~~v  369 (512)
                      +.||..+++.  +-...   ....+. ...+++++...    +.+  ++.++.+|..+++    .....-.+  +.+.+.
T Consensus       186 ~a~d~~tG~~--~W~~~---~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~--~~~~sp  256 (369)
T 2hz6_A          186 VTVDSESGDV--LWIQN---YASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFP--KETEAK  256 (369)
T ss_dssp             EEECTTTCCE--EEEEE---CSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC--CHHHHH
T ss_pred             EEEECCCCcE--EEEec---CCCceEEEEEecCCceEeccceeec--ccceeeeehhcCCcccceeeeeccC--cccccc
Confidence            9999876432  22221   111222 23444555321    111  2335555554443    21111111  111111


Q ss_pred             EeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          370 NWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       370 ~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      ..  .+ ..|+.++.||.++..+...
T Consensus       257 ~~--~~-g~lyv~~~~G~l~al~~~~  279 (369)
T 2hz6_A          257 SK--LT-PTLYVGKYSTSLYASPSMV  279 (369)
T ss_dssp             HH--SE-EEECBEECSSCEECCEEEE
T ss_pred             cc--cc-ceEEEecccCCEEecCccc
Confidence            11  22 4788888999999998764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.93  E-value=3.8e-08  Score=94.60  Aligned_cols=276  Identities=11%  Similarity=0.039  Sum_probs=155.9

Q ss_pred             cCCCcEEEEeeC-CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE-e-cCCCEEEEEe-----------
Q 010390           62 SKNSHIFAVSDE-DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW-I-KEDTNILTAS-----------  127 (512)
Q Consensus        62 s~~~~~latg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-s-~~~~~l~s~~-----------  127 (512)
                      .+||++|.+... ++.|.+.|+.+.+..           .+..+. .......+++ + |++.++++++           
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~-----------~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~  165 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCD-----------AILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT  165 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEE-----------EEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEe-----------eEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence            348888887755 456999999876431           111222 2245788888 4 8999998885           


Q ss_pred             -------CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC---------------cEEEEeCCCCCC
Q 010390          128 -------GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG---------------SFAIWDLRCKSS  185 (512)
Q Consensus       128 -------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---------------~i~vwd~~~~~~  185 (512)
                             .++.+.++|.++.+...++.--. ....++++|++ .++++.+.+.               .|.+.|......
T Consensus       166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~  243 (595)
T 1fwx_A          166 NMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK  243 (595)
T ss_dssp             STTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred             ccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence                   24679999999998888776322 34567899988 6777666542               355555432110


Q ss_pred             CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                      .........+...........  ..........-.....++.++|||+++++++..+..|.++|+.+.+....-......
T Consensus       244 ~v~~Gk~~~i~~V~VID~~~~--~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          244 AIAAGDYQELNGVKVVDGRKE--ASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             HHHHTCSEEETTEEEEECSGG--GCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             eccCCCeeEECcEEEEeCccc--CCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence            000000000000000000000  000101112223466789999999999999988999999999976421100000000


Q ss_pred             ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC--------CCceEeeeecee---ceeEEEEEECCCCCE
Q 010390          266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD--------KGPIQHFSGCRI---ESFYVKSEICPNASH  334 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~---~~~~~~~~~s~~~~~  334 (512)
                      .......-......++|+++|...++...|+.|.+||+....        ...+..+.-+..   ........++|||++
T Consensus       322 ~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~  401 (595)
T 1fwx_A          322 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW  401 (595)
T ss_dssp             GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred             ceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCE
Confidence            000112223457889999999444456689999999986521        223333332211   111112356799999


Q ss_pred             EEEecC---CCC----------EEEEecCCCC
Q 010390          335 ILSGSS---DGN----------AYVWQVNKPQ  353 (512)
Q Consensus       335 l~~g~~---dg~----------i~iw~~~~~~  353 (512)
                      |++...   |..          -.++|+..++
T Consensus       402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          402 LVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             EEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            988643   332          1889995544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.90  E-value=4.7e-06  Score=86.47  Aligned_cols=292  Identities=11%  Similarity=0.082  Sum_probs=172.0

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI  132 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i  132 (512)
                      |.++..   .++|.+.+ |+.++-|..||..++...           ... ...+...|.++...+++.+.+ |+.++-|
T Consensus       175 i~~i~~---d~~g~lwi-gt~~~Gl~~~~~~~~~~~-----------~~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl  237 (795)
T 4a2l_A          175 IASTLY---RQGDQIYI-GTSTDGLYTYSITQKTFE-----------KVI-PILGTKQIQAILQQSPTRIWV-ATEGAGL  237 (795)
T ss_dssp             CEEEEE---EETTEEEE-EESSSCEEEEETTTCCEE-----------ECC-----CCCEEEEEEEETTEEEE-EEBSSCE
T ss_pred             eEEEEE---CCCCCEEE-EECCCCEEEEeCCCCeEE-----------Eec-CCCCCCeeEEEEEcCCCCEEE-EECCCCe
Confidence            556555   66776554 555555888987654321           000 012346789998887776544 5544348


Q ss_pred             EEEeCCCCeeeecccC-------cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          133 KIWDAEKKKCTGALMG-------HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      .+||..+++.......       ....|.++...+++ . |..|+.+ -|.+||..+.........              
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~--------------  300 (795)
T 4a2l_A          238 FLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSN--------------  300 (795)
T ss_dssp             EEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCC--------------
T ss_pred             EEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecC--------------
Confidence            9999887754432211       23569999888766 4 4445555 588898764421110000              


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                            ...........|.++...++|...+  |+.++-|..|+..+.........+.     ........|.++..+++
T Consensus       301 ------~~~~~~l~~~~i~~i~~D~~g~lWi--gt~~~Gl~~~~~~~~~~~~~~~~~~-----~~~l~~~~V~~i~~d~~  367 (795)
T 4a2l_A          301 ------PVENGSLSQRSVRSIFMDSQGGMWL--GTYFGGLNYYHPIRNRFKNIRNIPY-----KNSLSDNVVSCIVEDKD  367 (795)
T ss_dssp             ------TTSTTSCSSSCEEEEEECTTSCEEE--EESSSCEEEECGGGGSSEEECCCTT-----SSSCSCSSEEEEEECTT
T ss_pred             ------CCCCCCCCCCcEEEEEEeCCcCEEE--EECCCCeEEeCCCcccceEEcCCCC-----CCCCCCCeeEEEEECCC
Confidence                  0000011235799999988887665  4467789999876654322111100     01112345899999988


Q ss_pred             CCEEEEEecCCeEEEEEcccCCCCceEeeeec-------eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390          286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC-------RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      |. |..|+.++-|..||.....   ...+...       .....+.+++..++++.|..|+.++-|.+||..+++.  ..
T Consensus       368 g~-lWiGt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~--~~  441 (795)
T 4a2l_A          368 KN-LWIGTNDGGLNLYNPITQR---FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV--EN  441 (795)
T ss_dssp             SC-EEEEESSSCEEEECTTTCC---EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE--EE
T ss_pred             CC-EEEEECCCCeEEEcCCCCc---EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE--EE
Confidence            87 5557777788999865422   2222110       1124577788888888566677666699999876543  12


Q ss_pred             ec-----cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          359 LK-----SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       359 ~~-----~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      +.     .....|.++...+++ .+.+.. .+ -|.+||..+++...
T Consensus       442 ~~~~~~~l~~~~v~~i~~d~~g-~lwigt-~~-Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          442 FNQRNSQLVNENVYAILPDGEG-NLWLGT-LS-ALVRFNPEQRSFTT  485 (795)
T ss_dssp             ECTTTSCCSCSCEEEEEECSSS-CEEEEE-SS-CEEEEETTTTEEEE
T ss_pred             eecCCCCcCCCeeEEEEECCCC-CEEEEe-cC-ceeEEeCCCCeEEE
Confidence            21     234579999998887 544444 44 48889988776543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.89  E-value=4.6e-08  Score=90.05  Aligned_cols=220  Identities=10%  Similarity=0.025  Sum_probs=132.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      +..|..++.++.|..+|.. ++.......+...+.++...+++  .++.++.++.|..+|.. ++.....          
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~----------  172 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRF----------  172 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEE----------
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEE----------
Confidence            5567778888999999988 77666665555556666666554  46667788999999987 4321110          


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                       ......+.++...+++..++  ++  +.|..+| .+++.....           ......+.+
T Consensus       173 -----------------~~~~~~~~~~~~d~~g~l~v--~t--~~l~~~d-~~g~~~~~~-----------~~~~~~~~~  219 (330)
T 3hxj_A          173 -----------------KTNDAITSAASIGKDGTIYF--GS--DKVYAIN-PDGTEKWNF-----------YAGYWTVTR  219 (330)
T ss_dssp             -----------------ECSSCCCSCCEECTTCCEEE--ES--SSEEEEC-TTSCEEEEE-----------CCSSCCCSC
T ss_pred             -----------------ecCCCceeeeEEcCCCEEEE--Ee--CEEEEEC-CCCcEEEEE-----------ccCCcceec
Confidence                             01122345555666666544  32  7789999 555544332           112245778


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      +..+++|. |++++.++.|..+|..   ...+..+....  .....+.+.+++ .|..++.+|.|..+|. +++. ...+
T Consensus       220 ~~~~~~g~-l~v~t~~~gl~~~~~~---g~~~~~~~~~~--~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~-~~~~  290 (330)
T 3hxj_A          220 PAISEDGT-IYVTSLDGHLYAINPD---GTEKWRFKTGK--RIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTE-KWNF  290 (330)
T ss_dssp             CEECTTSC-EEEEETTTEEEEECTT---SCEEEEEECSS--CCCSCCEECTTS-CEEEECTTCEEEEECT-TSCE-EEEE
T ss_pred             eEECCCCe-EEEEcCCCeEEEECCC---CCEeEEeeCCC--CccccceEcCCC-eEEEecCCCCEEEECC-CCcE-EEEE
Confidence            88888875 5556677888888742   22222222111  111224444455 5666777878999985 4433 2333


Q ss_pred             ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ......+.++...+++  .|..++.+|.+++...+..+
T Consensus       291 ~~~~~~~~~~~~d~~g--~l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          291 ETGSWIIATPVIDENG--TIYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             ECSSCCCSCCEECTTC--CEEEECTTSCEEEEEC----
T ss_pred             EcCCccccceEEcCCC--EEEEEcCCCeEEEEeccccc
Confidence            3334566777777776  57778999999998776544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.89  E-value=1.5e-07  Score=88.51  Aligned_cols=267  Identities=10%  Similarity=0.062  Sum_probs=149.1

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390           64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT  143 (512)
Q Consensus        64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  143 (512)
                      ++..+++++.++.|..+|.++++..-             ..............  .+..++.++.++.|..+|..+++.+
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W-------------~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~  166 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAW-------------QTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVK  166 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEE-------------EEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEE-------------EEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence            45677778889999999998775311             11111111111112  2457888888999999999999887


Q ss_pred             ecccCcCCCE-----EEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc-
Q 010390          144 GALMGHTGSI-----KSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK-  217 (512)
Q Consensus       144 ~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  217 (512)
                      ..+.......     ......  + ..++.+..++.|..+|..+++..........       .+.      .....+. 
T Consensus       167 W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~-------~~~------~~~~~~~~  230 (376)
T 3q7m_A          167 WTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQA-------TGS------TEIDRLSD  230 (376)
T ss_dssp             EEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC------------------------C
T ss_pred             EEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccC-------CCC------cccccccc
Confidence            7665332111     112222  3 5677888899999999987764322110000       000      0000000 


Q ss_pred             cccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCe
Q 010390          218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR  297 (512)
Q Consensus       218 ~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  297 (512)
                      ....++    .  .+..+++ ++.++.+..+|..+++.......             .....+..  ++..+++++.++.
T Consensus       231 ~~~~p~----~--~~~~v~~-~~~~g~l~~~d~~tG~~~w~~~~-------------~~~~~~~~--~~~~l~~~~~~g~  288 (376)
T 3q7m_A          231 VDTTPV----V--VNGVVFA-LAYNGNLTALDLRSGQIMWKREL-------------GSVNDFIV--DGNRIYLVDQNDR  288 (376)
T ss_dssp             CCCCCE----E--ETTEEEE-ECTTSCEEEEETTTCCEEEEECC-------------CCEEEEEE--ETTEEEEEETTCC
T ss_pred             cCCCcE----E--ECCEEEE-EecCcEEEEEECCCCcEEeeccC-------------CCCCCceE--ECCEEEEEcCCCe
Confidence            000111    1  2344554 44689999999998887654321             11233333  3567888888999


Q ss_pred             EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE-EEeCCCCC
Q 010390          298 IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA-VNWCPNEA  376 (512)
Q Consensus       298 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~  376 (512)
                      |..+|..+++.  +-...... .........  .+..|++++.+|.|+++|..+++.. .........+.. ... . + 
T Consensus       289 l~~~d~~tG~~--~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~-~~~~~~~~~~~~~~~~-~-~-  359 (376)
T 3q7m_A          289 VMALTIDGGVT--LWTQSDLL-HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV-AQQKVDSSGFQTEPVA-A-D-  359 (376)
T ss_dssp             EEEEETTTCCE--EEEECTTT-TSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE-EEEECCTTCBCSCCEE-E-T-
T ss_pred             EEEEECCCCcE--EEeecccC-CCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE-EEEecCCCcceeCCEE-E-C-
Confidence            99999876432  22221000 000111111  2567888888999999999887753 233322222221 122 2 3 


Q ss_pred             CeEEEEeCCCcEEEEe
Q 010390          377 GKIVTSSDDYTVRLWS  392 (512)
Q Consensus       377 ~~l~s~~~dg~i~vwd  392 (512)
                      ..|+.++.||.|+.|+
T Consensus       360 ~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          360 GKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TEEEEEBTTSCEEEEE
T ss_pred             CEEEEEeCCCEEEEEe
Confidence            5788899999999987

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.88  E-value=6.6e-07  Score=79.49  Aligned_cols=235  Identities=11%  Similarity=-0.040  Sum_probs=143.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeee-----ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          121 TNILTASGDQTIKIWDAEKKKCT-----GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      .+|+.+.. +.|+.+++......     ..+......+..++|+++++.++++-..++.|..+++.......        
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--------   72 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT--------   72 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--------
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE--------
Confidence            34555543 46888887654321     11221224578999999764666666677899999987543210        


Q ss_pred             eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                         ...........+++++++..++++...++.|.+++.........           ......
T Consensus        73 -------------------~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~-----------~~~~~~  122 (267)
T 1npe_A           73 -------------------IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL-----------FDTGLV  122 (267)
T ss_dssp             -------------------EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------ECSSCS
T ss_pred             -------------------EEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE-----------EECCCC
Confidence                               00011236789999998877777776778999999875332111           111113


Q ss_pred             CeeEEEeCCCCCEEEEEec---CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecCCCCEEEEecCC
Q 010390          276 GISSLSQDSNGVFLTASCM---DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSSDGNAYVWQVNK  351 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~  351 (512)
                      ....++++|++..|+.+..   .+.|..+++....   ...+.... ......++++++++.| ++-...+.|.+++...
T Consensus       123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~---~~~~~~~~-~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDN-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (267)
T ss_dssp             SEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             CccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC---cEEEEECC-CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence            4678999997666665554   3688888874322   11221111 1245678999987666 4555567899999875


Q ss_pred             CCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          352 PQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       352 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      ... ...... ......++.. .+ .++++....+.|.++|..+++.+...
T Consensus       199 ~~~-~~~~~~-~~~P~gi~~d-~~-~lyva~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          199 PGR-RKVLEG-LQYPFAVTSY-GK-NLYYTDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             EEE-EEEEEC-CCSEEEEEEE-TT-EEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             Cce-EEEecC-CCCceEEEEe-CC-EEEEEECCCCeEEEEeCCCCCceEEE
Confidence            432 122222 2334567654 33 56666667789999999988876653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.88  E-value=4.7e-06  Score=86.53  Aligned_cols=299  Identities=7%  Similarity=0.015  Sum_probs=172.7

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      ..|.+|..   .++|.+.+ |+.++-|.+||..+......  ..    .......-....|.++...++|...+ |+.+|
T Consensus       215 ~~i~~i~~---d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~--~~----~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G  283 (795)
T 4a2l_A          215 KQIQAILQ---QSPTRIWV-ATEGAGLFLINPKTKEIKNY--LH----SPSNPKSISSNYIRSLAMDSQNRLWI-GTFND  283 (795)
T ss_dssp             CCEEEEEE---EETTEEEE-EEBSSCEEEEETTTTEEEEE--CC----CTTCTTSCSCSBEEEEEECTTSCEEE-EESSC
T ss_pred             CeeEEEEE---cCCCCEEE-EECCCCeEEEeCCCCeEEEe--ec----CCCCccccCCCeEEEEEEcCCCCEEE-EeCCh
Confidence            34555555   56666554 44443488898765421000  00    00000011246799999988776444 55555


Q ss_pred             cEEEEeCCCCeeeeccc-------CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          131 TIKIWDAEKKKCTGALM-------GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                       |.+||..+++......       -....|.++...+++  .|..|+.++-|..|+............            
T Consensus       284 -l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~------------  348 (795)
T 4a2l_A          284 -LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNIRNI------------  348 (795)
T ss_dssp             -EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEECCC------------
T ss_pred             -hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEEcCC------------
Confidence             8999988776443221       123579999888766  366677777888898654321110000            


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc-cccccCeeEEEe
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK-ETRLHGISSLSQ  282 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~  282 (512)
                            ..   ........|.++...+++...+  |+.++-|..||..+............    .. ......|.++..
T Consensus       349 ------~~---~~~l~~~~V~~i~~d~~g~lWi--Gt~~~Gl~~~~~~~~~~~~~~~~~~~----~~~~l~~~~v~~i~~  413 (795)
T 4a2l_A          349 ------PY---KNSLSDNVVSCIVEDKDKNLWI--GTNDGGLNLYNPITQRFTSYTLQEDE----SARGIGSNNIKAVYV  413 (795)
T ss_dssp             ------TT---SSSCSCSSEEEEEECTTSCEEE--EESSSCEEEECTTTCCEEEECCC----------CCSCSCEEEEEE
T ss_pred             ------CC---CCCCCCCeeEEEEECCCCCEEE--EECCCCeEEEcCCCCcEEEEecCCCC----cccCCCCccEEEEEE
Confidence                  00   0011234689998888887665  54677899999876543322110000    00 112356899999


Q ss_pred             CCCCCEEEEEecCCeEEEEEcccCCCCceEeeee---ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG---CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      ++++..|.+|+.++-|..||..+..   ...+..   ......+.++...++|++.+... +| +.+|+..+++......
T Consensus       414 d~~g~~lWigt~~~Gl~~~d~~~~~---~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~  488 (795)
T 4a2l_A          414 DEKKSLVYIGTHAGGLSILHRNSGQ---VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEK  488 (795)
T ss_dssp             ETTTTEEEEEETTTEEEEEETTTCC---EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCB
T ss_pred             cCCCCEEEEEeCcCceeEEeCCCCc---EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEccc
Confidence            9898867778887889999975432   222211   01124577788888887665544 45 8899877653211110


Q ss_pred             -----ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          360 -----KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       360 -----~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                           .-....|.++...+++ .+.+.. . +-|..||..+++.
T Consensus       489 ~~~~~~~~~~~i~~i~~d~~g-~lWigt-~-~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          489 EKDGTPVVSKQITTLFRDSHK-RLWIGG-E-EGLSVFKQEGLDI  529 (795)
T ss_dssp             CTTCCBCCCCCEEEEEECTTC-CEEEEE-S-SCEEEEEEETTEE
T ss_pred             cccccccCCceEEEEEECCCC-CEEEEe-C-CceEEEeCCCCeE
Confidence                 1123579999999888 555444 4 4588899877665

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.87  E-value=1.2e-05  Score=72.94  Aligned_cols=240  Identities=9%  Similarity=0.018  Sum_probs=137.5

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      ....++++   +++|+++++-..++.|..||.+...              .. ..........+++.++++++++.....
T Consensus        32 ~~pegia~---~~~g~lyv~d~~~~~I~~~d~~g~~--------------~~-~~~~~~~p~gia~~~dG~l~vad~~~~   93 (306)
T 2p4o_A           32 TFLENLAS---APDGTIFVTNHEVGEIVSITPDGNQ--------------QI-HATVEGKVSGLAFTSNGDLVATGWNAD   93 (306)
T ss_dssp             CCEEEEEE---CTTSCEEEEETTTTEEEEECTTCCE--------------EE-EEECSSEEEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEE---CCCCCEEEEeCCCCeEEEECCCCce--------------EE-EEeCCCCceeEEEcCCCcEEEEeccCC
Confidence            45678888   8999977777788999999876431              11 111235688999999998666554332


Q ss_pred             --cEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          131 --TIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       131 --~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                        .|..+|..+++...... ........++..+.+ ..+++-..++.|.++|...+.....      ...      ....
T Consensus        94 ~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~------~~~------~~~~  160 (306)
T 2p4o_A           94 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIW------LEH------PMLA  160 (306)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEE------EEC------GGGS
T ss_pred             cceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEE------EEC------Cccc
Confidence              46677777776532221 112234555554433 4455554578888888754210000      000      0000


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLHGISSLSQDSNG  286 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  286 (512)
                       ..    .....-.....+  ++++..++++....+.|..|++.. +.....          ...........++++++|
T Consensus       161 -~~----~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~----------~~~~~~~~P~gi~vd~dG  223 (306)
T 2p4o_A          161 -RS----NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP----------EIFVEQTNIDDFAFDVEG  223 (306)
T ss_dssp             -CS----STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC----------EEEEESCCCSSEEEBTTC
T ss_pred             -cc----cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc----------EEEeccCCCCCeEECCCC
Confidence             00    000011134445  788888888777788999999875 221000          011111346789999999


Q ss_pred             CEEEEEecCCeEEEEEcccCCCCceEeeeecee-ceeEEEEEEC---CCCCEEEEecCCC
Q 010390          287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI-ESFYVKSEIC---PNASHILSGSSDG  342 (512)
Q Consensus       287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s---~~~~~l~~g~~dg  342 (512)
                      +++++....+.|.++|...    .......... .....+++|.   ++++.|++.+..+
T Consensus       224 ~l~va~~~~~~V~~~~~~G----~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          224 NLYGATHIYNSVVRIAPDR----STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CEEEECBTTCCEEEECTTC----CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CEEEEeCCCCeEEEECCCC----CEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            8777766778999998631    1211111111 1346778998   7877776655443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.86  E-value=2.3e-08  Score=92.05  Aligned_cols=261  Identities=11%  Similarity=0.023  Sum_probs=147.1

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK  141 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~  141 (512)
                      ..+| .|.+++.++.|..|| .+++.             ......+...+.++...+++. |..++.+  |..+|. +++
T Consensus        28 d~~g-~l~v~t~~~~l~~~d-~~g~~-------------~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~   88 (330)
T 3hxj_A           28 AKNG-TIYLGSSNKNLYAIN-TDGSV-------------KWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGT   88 (330)
T ss_dssp             CTTS-CEECSSTTTTTEEEC-TTSCE-------------EESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGG
T ss_pred             ccCC-eEEEEcCCCEEEEEC-CCCcE-------------EEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCc
Confidence            4455 466677788899999 65532             222222334556677665664 5555544  888986 666


Q ss_pred             eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccc
Q 010390          142 CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM  221 (512)
Q Consensus       142 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (512)
                      .+..+...........+.  + ..+..++.++.|..+|.. ++....                           ......
T Consensus        89 ~~~~~~~~~~~~~~~~~~--~-~~l~v~t~~~~l~~~d~~-g~~~~~---------------------------~~~~~~  137 (330)
T 3hxj_A           89 EKWRFDTKKAIVSDFTIF--E-DILYVTSMDGHLYAINTD-GTEKWR---------------------------FKTKKA  137 (330)
T ss_dssp             GGGGSCC-----CCEEEE--T-TEEEEECTTSEEEEECTT-SCEEEE---------------------------EECSSC
T ss_pred             EEEEEECCCCcccCceEE--C-CEEEEEecCCEEEEEcCC-CCEEEE---------------------------EcCCCc
Confidence            665554333333333343  3 567778888999999987 432111                           001122


Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY  301 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  301 (512)
                      .+.++...+++..++  ++.++.|..+|.. ++.....           ......+.++..++++.+++. +  +.|..+
T Consensus       138 ~~~~~~~~~~g~l~v--gt~~~~l~~~d~~-g~~~~~~-----------~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~  200 (330)
T 3hxj_A          138 IYATPIVSEDGTIYV--GSNDNYLYAINPD-GTEKWRF-----------KTNDAITSAASIGKDGTIYFG-S--DKVYAI  200 (330)
T ss_dssp             CCSCCEECTTSCEEE--ECTTSEEEEECTT-SCEEEEE-----------ECSSCCCSCCEECTTCCEEEE-S--SSEEEE
T ss_pred             eeeeeEEcCCCEEEE--EcCCCEEEEECCC-CCEeEEE-----------ecCCCceeeeEEcCCCEEEEE-e--CEEEEE
Confidence            344455555666444  4467999999988 5544332           112234667777777775544 4  788999


Q ss_pred             EcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEE
Q 010390          302 NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT  381 (512)
Q Consensus       302 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s  381 (512)
                      | .+.  .........  ...+.++...++|.+ ..++.++.|..++.. +.. ...+......+.++...+++  .|..
T Consensus       201 d-~~g--~~~~~~~~~--~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~g--~l~v  270 (330)
T 3hxj_A          201 N-PDG--TEKWNFYAG--YWTVTRPAISEDGTI-YVTSLDGHLYAINPD-GTE-KWRFKTGKRIESSPVIGNTD--TIYF  270 (330)
T ss_dssp             C-TTS--CEEEEECCS--SCCCSCCEECTTSCE-EEEETTTEEEEECTT-SCE-EEEEECSSCCCSCCEECTTS--CEEE
T ss_pred             C-CCC--cEEEEEccC--CcceeceEECCCCeE-EEEcCCCeEEEECCC-CCE-eEEeeCCCCccccceEcCCC--eEEE
Confidence            8 332  222222211  122445667777754 445556778888743 332 22333333334445565554  6777


Q ss_pred             EeCCCcEEEEeCCCCcccc
Q 010390          382 SSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       382 ~~~dg~i~vwd~~~~~~~~  400 (512)
                      ++.+|.|..+|. +++.+.
T Consensus       271 ~t~~ggl~~~d~-~g~~~~  288 (330)
T 3hxj_A          271 GSYDGHLYAINP-DGTEKW  288 (330)
T ss_dssp             ECTTCEEEEECT-TSCEEE
T ss_pred             ecCCCCEEEECC-CCcEEE
Confidence            888888999996 555433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.85  E-value=6.3e-08  Score=93.09  Aligned_cols=242  Identities=12%  Similarity=0.060  Sum_probs=143.5

Q ss_pred             CCCEEEEEeC-CCcEEEEeCCCCeeeecccC-cCCCEEEEEe-e-CCCCCeEEEEe------------------CCCcEE
Q 010390          119 EDTNILTASG-DQTIKIWDAEKKKCTGALMG-HTGSIKSLCS-H-PTNSDILVSGS------------------RDGSFA  176 (512)
Q Consensus       119 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~-~-~~~~~~l~s~~------------------~dg~i~  176 (512)
                      ||++|..... ++.|.+.|+.+.++...+.- .......+++ . |++ .++++++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceEE
Confidence            7888886655 56799999999998774432 2346888887 4 877 6666664                  235677


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC--------------
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--------------  242 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--------------  242 (512)
                      +.|..+.+...+.                           .- .+....++++|+++++++++...              
T Consensus       179 vID~~t~~v~~qI---------------------------~V-gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~  230 (595)
T 1fwx_A          179 AVDADKWEVAWQV---------------------------LV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM  230 (595)
T ss_dssp             EEETTTTEEEEEE---------------------------EE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             EEECCCCeEEEEE---------------------------Ee-CCCccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence            7777654322211                           00 01234456677777777665332              


Q ss_pred             C-----------------------eEEEEeccC--ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCC
Q 010390          243 S-----------------------IVKFWDTRN--LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDH  296 (512)
Q Consensus       243 g-----------------------~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  296 (512)
                      .                       .|.+.|.++  ++...           ....-.....++.++|||+++++++ .+.
T Consensus       231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~-----------~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~  299 (595)
T 1fwx_A          231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFT-----------RYIPIANNPHGCNMAPDKKHLCVAGKLSP  299 (595)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSE-----------EEEEEESSCCCEEECTTSSEEEEECTTSS
T ss_pred             ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeE-----------EEEecCCCceEEEEcCCCCEEEEeCCCCC
Confidence            1                       255555554  11100           0111223567899999999888776 678


Q ss_pred             eEEEEEcccCCC------CceE-eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC---------CCCCceec
Q 010390          297 RIYLYNVLQLDK------GPIQ-HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP---------QADPIKLK  360 (512)
Q Consensus       297 ~i~i~d~~~~~~------~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~---------~~~~~~~~  360 (512)
                      +|.++|+.+...      .+.. .............++|+++|...++.-.|+.|.+||+...         ...+..+.
T Consensus       300 ~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid  379 (595)
T 1fwx_A          300 TVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD  379 (595)
T ss_dssp             BEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE
T ss_pred             eEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee
Confidence            999999975320      0000 1111122233556899999954566777999999999762         11223333


Q ss_pred             cccCC-----eEEEEeCCCCCCeEEEEe---CCCcE----------EEEeCCCCccccc
Q 010390          361 SHDGE-----VTAVNWCPNEAGKIVTSS---DDYTV----------RLWSLENSRCSSM  401 (512)
Q Consensus       361 ~h~~~-----v~~v~~~~~~~~~l~s~~---~dg~i----------~vwd~~~~~~~~~  401 (512)
                      .|..+     -.++.++||| ++|+++.   .|..+          .++|+.++++...
T Consensus       380 V~yqpGh~~~~~g~t~~~DG-k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv  437 (595)
T 1fwx_A          380 VHYQPGHLKTVMGETLDATN-DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLV  437 (595)
T ss_dssp             CSSCEEEEEETTTTSTTCCS-SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred             cccccccceeccceEeCCCC-CEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEE
Confidence            34322     1223568999 7877765   34431          8899977665443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.83  E-value=6.7e-07  Score=81.93  Aligned_cols=243  Identities=9%  Similarity=0.031  Sum_probs=142.7

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc--------------------CcCCCEEEEEeeCCCCCeEEEE
Q 010390          110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM--------------------GHTGSIKSLCSHPTNSDILVSG  169 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~h~~~v~~l~~~~~~~~~l~s~  169 (512)
                      ...+++|.+++++++++..++.|..||..+++... +.                    .....+.++++.+++++ |+.+
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            45567889998878888889999999987654321 11                    01235789999973324 4444


Q ss_pred             eCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee-cCCEEEEEee--------
Q 010390          170 SRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASA--------  240 (512)
Q Consensus       170 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~--------  240 (512)
                      ...+.|..+|..++...... .        .              ...........+++.+ ++...++...        
T Consensus        98 d~~~~i~~~d~~~g~~~~~~-~--------~--------------~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLA-T--------S--------------VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEE-S--------E--------------ETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred             ECCCCEEEEeCCCCEEEEec-c--------c--------------CCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence            44455888886543211000 0        0              0000112467889999 8876665321        


Q ss_pred             --------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCCce
Q 010390          241 --------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGPI  311 (512)
Q Consensus       241 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~  311 (512)
                              .++.|..||..+++....            .........++++++++.|+++ ...+.|.+|++........
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~~~~~~------------~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~  222 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTKETTLL------------LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA  222 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTTEEEEE------------EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCE
T ss_pred             ceehcccCCCceEEEEeCCCCEEEEe------------ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCcc
Confidence                    136788888765543211            1112345679999999877666 4568999999864322222


Q ss_pred             EeeeeceeceeEEEEEECCCCCEEEEecC----------CCCEEEEecCCCCCCCceeccc----cCCeEEEEeCCCCCC
Q 010390          312 QHFSGCRIESFYVKSEICPNASHILSGSS----------DGNAYVWQVNKPQADPIKLKSH----DGEVTAVNWCPNEAG  377 (512)
Q Consensus       312 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----------dg~i~iw~~~~~~~~~~~~~~h----~~~v~~v~~~~~~~~  377 (512)
                      ..+..  ... ...++++++|++.++...          .+.|..+|.. ++. ...+...    -..++++++ .++ .
T Consensus       223 ~~~~~--~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~-~~~~~~~~g~~~~~~~~~~~-~~g-~  295 (322)
T 2fp8_A          223 EVLVK--IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI-LEVIPLPPPFAGEHFEQIQE-HDG-L  295 (322)
T ss_dssp             EEEEE--CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCE-EEEEECCTTTTTSCCCEEEE-ETT-E
T ss_pred             ceEEe--CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCE-EEEEECCCCCccccceEEEE-eCC-E
Confidence            22221  112 556899999987766543          3567777764 322 2233222    234666766 345 5


Q ss_pred             eEEEEeCCCcEEEEeCCCC
Q 010390          378 KIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       378 ~l~s~~~dg~i~vwd~~~~  396 (512)
                      ++++...++.|.++++...
T Consensus       296 L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          296 LYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEEECSSCSEEEEEEC---
T ss_pred             EEEeecCCCceEEEecccc
Confidence            6666667888999988643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.81  E-value=1.9e-06  Score=78.87  Aligned_cols=254  Identities=9%  Similarity=0.050  Sum_probs=140.7

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccc--e------eccccCCCcEEEEEEecCCCE
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKAR--I------SDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~------~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      ..+.++++   .++|+++.++..++.|..||..++....  .........  .      .........+..+++.+++..
T Consensus        19 ~~p~~i~~---d~~g~~l~v~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~   93 (322)
T 2fp8_A           19 YAPNSFTF---DSTNKGFYTSVQDGRVIKYEGPNSGFVD--FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ   93 (322)
T ss_dssp             SCCCCEEC---CTTCSSEEEECTTSEEEEECCTTTCEEE--EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred             CCceEEEE---cCCCCEEEEEcCCCeEEEECCCCCceEE--EecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence            44678888   8999978888889999999876542210  000000000  0      000011245889999973334


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecc---cC-cCCCEEEEEeeC-CCCCeEEEEeC-----------------CCcEEEEeC
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGAL---MG-HTGSIKSLCSHP-TNSDILVSGSR-----------------DGSFAIWDL  180 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~---~~-h~~~v~~l~~~~-~~~~~l~s~~~-----------------dg~i~vwd~  180 (512)
                      |+.+...+.|..+|..+++.....   .+ .....+.+++.+ ++ +++++-..                 ++.|..||.
T Consensus        94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeC
Confidence            555555555888997765422111   11 113467888888 77 65555432                 255666665


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA  260 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~  260 (512)
                      .+++..                            ...........++++++++.++++...++.|..|++......... 
T Consensus       173 ~~~~~~----------------------------~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-  223 (322)
T 2fp8_A          173 STKETT----------------------------LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-  223 (322)
T ss_dssp             TTTEEE----------------------------EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-
T ss_pred             CCCEEE----------------------------EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-
Confidence            433210                            000111245678999999988776666789999998753210000 


Q ss_pred             CCCccccccccccccCeeEEEeCCCCCEEEEEec----------CCeEEEEEcccCCCCceEeeeecee--ceeEEEEEE
Q 010390          261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCM----------DHRIYLYNVLQLDKGPIQHFSGCRI--ESFYVKSEI  328 (512)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~  328 (512)
                              ....... ...++++++|++.++...          .+.|..+|..   ...+..+.....  ...+..+++
T Consensus       224 --------~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~---G~~~~~~~~~~g~~~~~~~~~~~  291 (322)
T 2fp8_A          224 --------VLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF---GNILEVIPLPPPFAGEHFEQIQE  291 (322)
T ss_dssp             --------EEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT---SCEEEEEECCTTTTTSCCCEEEE
T ss_pred             --------eEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC---CCEEEEEECCCCCccccceEEEE
Confidence                    0111112 677899999986666544          4667788753   223333322110  122334444


Q ss_pred             CCCCCEEEEecCCCCEEEEecCCC
Q 010390          329 CPNASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       329 s~~~~~l~~g~~dg~i~iw~~~~~  352 (512)
                       .+++++++...++.|..+++...
T Consensus       292 -~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          292 -HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             -ETTEEEEECSSCSEEEEEEC---
T ss_pred             -eCCEEEEeecCCCceEEEecccc
Confidence             45666666667788999987643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=8.8e-07  Score=77.12  Aligned_cols=212  Identities=10%  Similarity=-0.048  Sum_probs=133.6

Q ss_pred             eeeecccCcCC--CEEEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceec
Q 010390          141 KCTGALMGHTG--SIKSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR  216 (512)
Q Consensus       141 ~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (512)
                      +.+.++. |..  ....+.|++++ .++++.+.  ++.|+++|+.+++.......                         
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-------------------------   62 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKM-------------------------   62 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEEC-------------------------
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEec-------------------------
Confidence            3455553 443  36899999875 66666553  57999999998765432110                         


Q ss_pred             ccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC
Q 010390          217 KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH  296 (512)
Q Consensus       217 ~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  296 (512)
                       ........+++  ++..++.+...++.+.++|..+.+.......+           ..  ....+++||+.|+++..++
T Consensus        63 -~~~~fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-----------~~--~g~glt~Dg~~l~vs~gs~  126 (266)
T 2iwa_A           63 -DDSYFGEGLTL--LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-----------MK--DGWGLATDGKILYGSDGTS  126 (266)
T ss_dssp             -CTTCCEEEEEE--ETTEEEEEETTCSEEEEEETTTTEEEEEEECC-----------SS--SCCEEEECSSSEEEECSSS
T ss_pred             -CCCcceEEEEE--eCCEEEEEEecCCEEEEEECCCCcEEEEEECC-----------CC--CeEEEEECCCEEEEECCCC
Confidence             00111223444  36677777778999999999988776543211           01  1233555777777777889


Q ss_pred             eEEEEEcccCCCCceEeeeec-eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc--c-----------
Q 010390          297 RIYLYNVLQLDKGPIQHFSGC-RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS--H-----------  362 (512)
Q Consensus       297 ~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~--h-----------  362 (512)
                      .|.++|..+.+.......... ........+.|. ++...+....++.|.+.|..+++.. ..+.-  .           
T Consensus       127 ~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~-~~I~~~g~~~~~~~~~~~~  204 (266)
T 2iwa_A          127 ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLL-GWILLPNLRKKLIDEGFRD  204 (266)
T ss_dssp             EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEE-EEEECHHHHHHHHHTTCTT
T ss_pred             eEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEE-EEEECCCcccccccccccc
Confidence            999999866432211111111 111124456676 6765566656789999999988753 33321  1           


Q ss_pred             cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          363 DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      ....+.|+|+|++..+++++...+.|.+-++....
T Consensus       205 ~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          205 IDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             cCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            13568999999986788888888999999987653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.66  E-value=9.4e-07  Score=76.94  Aligned_cols=204  Identities=11%  Similarity=-0.051  Sum_probs=127.2

Q ss_pred             cEEEEEEecCCCEEEEEeC--CCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390          110 AIFDLCWIKEDTNILTASG--DQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      ....+.|++++...++.+.  ++.|.+.|+.+++.+..+.-.. .....+++.  +..+.++.-.++.+.++|..+.+..
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            4689999998754455443  5799999999999888764222 233456665  4356666667899999999865433


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                      ...                           ......  .....+++..++++. .++.|.++|..+.+.........   
T Consensus       100 ~~i---------------------------~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~---  146 (266)
T 2iwa_A          100 KNF---------------------------THQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKY---  146 (266)
T ss_dssp             EEE---------------------------ECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEE---
T ss_pred             EEE---------------------------ECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECC---
Confidence            211                           000011  233556788888766 58899999999877655432110   


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece---------eceeEEEEEECCCCCE-EE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR---------IESFYVKSEICPNASH-IL  336 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~~~~-l~  336 (512)
                         .......++.+.+. ++...+....++.|.+.|..+++......+.+..         .......++|+|+++. ++
T Consensus       147 ---~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV  222 (266)
T 2iwa_A          147 ---NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV  222 (266)
T ss_dssp             ---TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred             ---CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence               00111235677777 6755544446789999998775432222222110         1124567999999765 46


Q ss_pred             EecCCCCEEEEecCCC
Q 010390          337 SGSSDGNAYVWQVNKP  352 (512)
Q Consensus       337 ~g~~dg~i~iw~~~~~  352 (512)
                      ++...+.+.+.++...
T Consensus       223 Tgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          223 TGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EETTCSEEEEEEEEEC
T ss_pred             ECCCCCeEEEEEEecc
Confidence            6667788888888654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.63  E-value=7.3e-07  Score=90.03  Aligned_cols=324  Identities=11%  Similarity=0.022  Sum_probs=165.7

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcE-EEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAI-FDLCWIKEDTNILTASGDQTIKIWDAEKKKC  142 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  142 (512)
                      +..+++++.++.|.-+|..+++..-.......    ........ ..+ ..+.+  .+..|+.++.|+.|..+|..+|+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~  139 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVA----KVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKA  139 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCC----GGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCC----ccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence            45666677788899999887754221110000    00000000 000 11222  355788888999999999999998


Q ss_pred             eecccCcC----CCEEE-EEeeCCCCCeEEEEeC------CCcEEEEeCCCCCCCCCccccc----eeeecccccccccc
Q 010390          143 TGALMGHT----GSIKS-LCSHPTNSDILVSGSR------DGSFAIWDLRCKSSPKSNCAES----FVFSSAVVKGAHLL  207 (512)
Q Consensus       143 ~~~~~~h~----~~v~~-l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  207 (512)
                      +..+....    ..+.+ ..+.  + ..++.+..      +|.|..+|..+++..-......    ..............
T Consensus       140 ~W~~~~~~~~~~~~~~~~P~v~--~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~  216 (668)
T 1kv9_A          140 IWSQQTTDPAKPYSITGAPRVV--K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT  216 (668)
T ss_dssp             EEEEECSCTTSSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             eeeeccCCCCCcceecCCCEEE--C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence            87665321    11111 1111  2 34555433      5899999999887654322100    00000000000000


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCC-------------------eEEEEeccCccceecccCCCccccc
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS-------------------IVKFWDTRNLKAQITQAWPHAESSS  268 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~  268 (512)
                      ...........+......+++.++...+++.. .++                   .|..+|.++++........+...- 
T Consensus       217 ~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~-~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~w-  294 (668)
T 1kv9_A          217 WQGDQYWKLGGGGTVWDSMAYDPELDLLYVGT-GNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW-  294 (668)
T ss_dssp             CCSSCHHHHCEECCCCSCEEEETTTTEEEEEC-CCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS-
T ss_pred             CCccceeeeCCCCccccceEEcCCCCEEEEeC-CCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccc-
Confidence            00000000011222234567888777766533 444                   499999999998776533211000 


Q ss_pred             cccccccCeeEEEeCCCCC---EEEEEecCCeEEEEEcccCCCCceEeeee------------ce---------ece---
Q 010390          269 AKETRLHGISSLSQDSNGV---FLTASCMDHRIYLYNVLQLDKGPIQHFSG------------CR---------IES---  321 (512)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~---------~~~---  321 (512)
                      .. ....+.....+..+|+   .++.++.+|.++++|..+++......+..            ..         ...   
T Consensus       295 d~-~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~  373 (668)
T 1kv9_A          295 DF-TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVM  373 (668)
T ss_dssp             CC-CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEE
T ss_pred             cc-cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEE
Confidence            00 0001222222223564   68888999999999986654221000000            00         000   


Q ss_pred             --------eEEEEEECCCCCEEEEe------------------------------------cCCCCEEEEecCCCCCCCc
Q 010390          322 --------FYVKSEICPNASHILSG------------------------------------SSDGNAYVWQVNKPQADPI  357 (512)
Q Consensus       322 --------~~~~~~~s~~~~~l~~g------------------------------------~~dg~i~iw~~~~~~~~~~  357 (512)
                              ....++++|+...++..                                    ..+|.|..||+.+++... 
T Consensus       374 ~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W-  452 (668)
T 1kv9_A          374 WPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW-  452 (668)
T ss_dssp             SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEE-
T ss_pred             CCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEE-
Confidence                    00115677766655431                                    134789999998887632 


Q ss_pred             eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      .... ...+....+...+ .+++.++.||.|+.||..+++.+..+.
T Consensus       453 ~~~~-~~~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          453 KVPY-PTHWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             EEEE-SSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EccC-CCCCcCceeEeCC-CEEEEECCcccchhhhhhcChhheEec
Confidence            2221 2223323333445 688899999999999999999876544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.62  E-value=2.3e-06  Score=73.48  Aligned_cols=194  Identities=10%  Similarity=0.001  Sum_probs=116.9

Q ss_pred             eeecccCcCC--CEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc
Q 010390          142 CTGALMGHTG--SIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK  217 (512)
Q Consensus       142 ~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (512)
                      .+.++. |..  ....+.|+ ++ .++.+.+.+|  .|+++|+.+++.......                          
T Consensus        33 vv~~~p-hd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--------------------------   83 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIEL--------------------------   83 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEEC--------------------------
T ss_pred             EEEEec-CCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEec--------------------------
Confidence            445553 543  34788898 45 7788888776  899999998865432211                          


Q ss_pred             cccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCe
Q 010390          218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR  297 (512)
Q Consensus       218 ~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  297 (512)
                        ..........+++..+..+...++.+.+||..+.+...+...+         .     ....+++++..|+.+..++.
T Consensus        84 --~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~---------~-----eG~glt~dg~~L~~SdGs~~  147 (262)
T 3nol_A           84 --GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD---------G-----EGWGLTHNDQYLIMSDGTPV  147 (262)
T ss_dssp             --CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS---------S-----CCCCEEECSSCEEECCSSSE
T ss_pred             --CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC---------C-----CceEEecCCCEEEEECCCCe
Confidence              1122222233346677766667999999999998877654211         1     12233356777877777889


Q ss_pred             EEEEEcccCCCCceEeeeec-eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc------------ccC
Q 010390          298 IYLYNVLQLDKGPIQHFSGC-RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS------------HDG  364 (512)
Q Consensus       298 i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~------------h~~  364 (512)
                      |.++|..+.+.......... ..-..+..+.|. +|+..+..-.++.|.+.|..+++.. ..+.-            -..
T Consensus       148 i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~-~~Id~~~L~~~~~~~~~~~~  225 (262)
T 3nol_A          148 LRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT-GIIDLNGILAEAGPLPSPID  225 (262)
T ss_dssp             EEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE-EEEECTTGGGGSCSCCSSCC
T ss_pred             EEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE-EEEECCcCccccccccCcCC
Confidence            99999866433222222111 111223335564 6765555556788999999887652 22211            123


Q ss_pred             CeEEEEeCCCCCCeEEEE
Q 010390          365 EVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       365 ~v~~v~~~~~~~~~l~s~  382 (512)
                      ..+.|+|+|++..++++|
T Consensus       226 vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          226 VLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEC
Confidence            579999999984444444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.62  E-value=0.00014  Score=66.99  Aligned_cols=234  Identities=9%  Similarity=-0.063  Sum_probs=138.2

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCC
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKK  140 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~  140 (512)
                      .+++ +|+.+. ...|+..+++....              ..+......+..++|.+.+..|+ +-...+.|..+++...
T Consensus        42 ~~~~-~ll~~~-~~~I~~i~~~g~~~--------------~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~  105 (349)
T 3v64_C           42 GPEP-VLLFAN-RIDIRQVLPHRSEY--------------TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS  105 (349)
T ss_dssp             SSCC-EEEEEC-BSCEEEECTTSCCE--------------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ccCc-eeEeec-ccceEEEeCCCCee--------------EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence            4543 444433 34587777765321              11222334588999998666665 4445788999998766


Q ss_pred             eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccc
Q 010390          141 KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAAS  220 (512)
Q Consensus       141 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (512)
                      .....+.........+++.+.+++++++-...+.|.+.++.......                           ......
T Consensus       106 ~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~---------------------------l~~~~l  158 (349)
T 3v64_C          106 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---------------------------LLWQSL  158 (349)
T ss_dssp             SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---------------------------EECTTC
T ss_pred             CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE---------------------------EEeCCC
Confidence            54333332334557888887665677777777889999886432111                           011112


Q ss_pred             ccEEEEEEeecCCEEEEEeecC-CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeE
Q 010390          221 MSITSVLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRI  298 (512)
Q Consensus       221 ~~v~~~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i  298 (512)
                      .....++++|.+..++.+...+ +.|..++++.......           ..........+++++++..|+.+. ..+.|
T Consensus       159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-----------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I  227 (349)
T 3v64_C          159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-----------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVI  227 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES-----------CCSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE-----------EECCCCCcceEEEeCCCCEEEEEECCCCEE
Confidence            3568899999877777766555 7888888775432211           111223468899998776666654 56789


Q ss_pred             EEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          299 YLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       299 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      ..+|+.....   ..+.... ......+++ ..+..+++-...+.|..++..+++.
T Consensus       228 ~~~~~dG~~~---~~~~~~~-~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          228 ERANLDGSHR---KAVISQG-LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             EEEETTSCSC---EEEECSS-CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEeCCCCce---EEEEeCC-CCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCc
Confidence            9999754221   1111111 122344666 3445555655667787777555544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=0.00011  Score=76.10  Aligned_cols=299  Identities=10%  Similarity=0.053  Sum_probs=168.7

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccc-cceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEK-ARISDWVAHQNAIFDLCWIKEDTNILTASGDQ  130 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg  130 (512)
                      .|.+|..   .++|. |..|+..+-|.++|..+..........-... .......-....|.++...++|. |..|+.++
T Consensus       259 ~i~~i~~---d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~  333 (781)
T 3v9f_A          259 YIFSIKQ---LKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG  333 (781)
T ss_dssp             CEEEEEE---CTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred             eEEEEEE---CCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence            4555555   66766 4456654568889876653211000000000 00000112356799999887775 66677666


Q ss_pred             cEEEEeCCCCeeeecc---------cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          131 TIKIWDAEKKKCTGAL---------MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       131 ~i~iwd~~~~~~~~~~---------~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      -|..++..++......         ......|.++...+++  .|..|+.++-|..||..+.......            
T Consensus       334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~------------  399 (781)
T 3v9f_A          334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIYNK------------  399 (781)
T ss_dssp             CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEECC-------------
T ss_pred             eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEEcc------------
Confidence            6999987765432211         0123568999887765  3556666667888987643211100            


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                  .........|.++...+++...+  |+.++.|..+|..+++......         .......|.++.
T Consensus       400 ------------~~~~~~~~~v~~i~~d~~g~lWi--gt~~~Gl~~~~~~~~~~~~~~~---------~~~~~~~v~~i~  456 (781)
T 3v9f_A          400 ------------ENRELLSNSVLCSLKDSEGNLWF--GTYLGNISYYNTRLKKFQIIEL---------EKNELLDVRVFY  456 (781)
T ss_dssp             ----------------CCCSBEEEEEECTTSCEEE--EETTEEEEEECSSSCEEEECCS---------TTTCCCCEEEEE
T ss_pred             ------------CCCCCCCcceEEEEECCCCCEEE--EeccCCEEEEcCCCCcEEEecc---------CCCCCCeEEEEE
Confidence                        00012235688888887777655  4456779999987665332110         011235688999


Q ss_pred             eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390          282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK  360 (512)
Q Consensus       282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~  360 (512)
                      .++++.+.+ |+. +-|..||..+........... ......+.++...++|.+.+....+| +..|+..+.+.  ..+.
T Consensus       457 ~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~--~~~~  531 (781)
T 3v9f_A          457 EDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV--RKFN  531 (781)
T ss_dssp             ECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE--EEEC
T ss_pred             ECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE--EEcc
Confidence            888886444 444 568889875533222111110 01124577888888888665544345 78888765432  1221


Q ss_pred             c----ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390          361 S----HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS  399 (512)
Q Consensus       361 ~----h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  399 (512)
                      .    ....|.++...+++ .+.++ +.+|.|..||..+++..
T Consensus       532 ~~~~l~~~~i~~i~~d~~g-~lWi~-T~~Glv~~~d~~~~~~~  572 (781)
T 3v9f_A          532 QYEGFCSNTINQIYRSSKG-QMWLA-TGEGLVCFPSARNFDYQ  572 (781)
T ss_dssp             TTTTCSCSCEEEEEECTTS-CEEEE-ETTEEEEESCTTTCCCE
T ss_pred             CCCCCCCCeeEEEEECCCC-CEEEE-ECCCceEEECCCCCcEE
Confidence            1    23578999998887 54444 44776589998877643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.56  E-value=0.00012  Score=66.11  Aligned_cols=239  Identities=12%  Similarity=0.020  Sum_probs=130.3

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCC
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSP  186 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~  186 (512)
                      .....++|+++++.+++-..++.|..||.... ....+. ....+..+++.+++ +++++.....  .|..+|..+++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEE
Confidence            56788999999987777667899999997654 333232 23468899999988 6655554332  3666665544321


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                      ...                         .. ........++..+++ .++++...++.|..+|...+........+....
T Consensus       109 ~~~-------------------------~~-~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~  161 (306)
T 2p4o_A          109 TLL-------------------------TL-PDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR  161 (306)
T ss_dssp             EEE-------------------------EC-TTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred             EEE-------------------------eC-CCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence            100                         00 001122333333433 444444457889888876542111000000000


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEccc-CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQ-LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA  344 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  344 (512)
                      . ...........+  ++++..|+++. ..+.|..|++.. ........+...   .....++++++|+++++....+.|
T Consensus       162 ~-~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V  235 (306)
T 2p4o_A          162 S-NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSV  235 (306)
T ss_dssp             S-STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             c-cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeE
Confidence            0 000111223444  77887666555 568999999864 211111222111   123348899999988877778889


Q ss_pred             EEEecCCCCCC-CceeccccCCeEEEEeC---CCCCCeEEEEeCC
Q 010390          345 YVWQVNKPQAD-PIKLKSHDGEVTAVNWC---PNEAGKIVTSSDD  385 (512)
Q Consensus       345 ~iw~~~~~~~~-~~~~~~h~~~v~~v~~~---~~~~~~l~s~~~d  385 (512)
                      .+++.. ++.. .......-...++++|.   |++ ..|+.++..
T Consensus       236 ~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~-~~LyVt~~~  278 (306)
T 2p4o_A          236 VRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDC-TAIYVVTNG  278 (306)
T ss_dssp             EEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTT-TEEEEEECT
T ss_pred             EEECCC-CCEEEEeecccccCCceEEEEecccCCC-CEEEEECCC
Confidence            999875 3221 11112223568999998   787 444444433

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.55  E-value=1.1e-05  Score=69.37  Aligned_cols=194  Identities=9%  Similarity=-0.036  Sum_probs=119.9

Q ss_pred             eeeecccCcC--CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccc
Q 010390          141 KCTGALMGHT--GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA  218 (512)
Q Consensus       141 ~~~~~~~~h~--~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (512)
                      +.+.++. |.  .....+.|+. + .++++.+.+|.|+++|+.+++..... .                           
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l---------------------------   92 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME-R---------------------------   92 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE-E---------------------------
T ss_pred             EEEEEEc-CCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE-C---------------------------
Confidence            3445553 44  3457888874 3 78888889999999999988765422 1                           


Q ss_pred             ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeE
Q 010390          219 ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRI  298 (512)
Q Consensus       219 ~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  298 (512)
                       .......-..+++..++.+...++.+.+||..+.+...+...+            ..-..++  +++..|+.+..++.|
T Consensus        93 -~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~------------~eGwGLt--~Dg~~L~vSdGs~~l  157 (268)
T 3nok_A           93 -LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS------------GEGWGLC--YWNGKLVRSDGGTML  157 (268)
T ss_dssp             -CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS------------SCCCCEE--EETTEEEEECSSSEE
T ss_pred             -CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC------------CceeEEe--cCCCEEEEECCCCEE
Confidence             0112221123345566666668999999999998877654221            1112333  567888888889999


Q ss_pred             EEEEcccCCCCceEeeeece-eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc-------------ccC
Q 010390          299 YLYNVLQLDKGPIQHFSGCR-IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS-------------HDG  364 (512)
Q Consensus       299 ~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~-------------h~~  364 (512)
                      .++|..+.+........... .-..+..+.|. +|+..+..-.+..|.+.|..+++.. ..+.-             -..
T Consensus       158 ~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~~L~~~~~~~~~~~~~  235 (268)
T 3nok_A          158 TFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDASALTRAVAGQVTNPEA  235 (268)
T ss_dssp             EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECHHHHHHHTTTCCCTTC
T ss_pred             EEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECCCCcccccccccCcCC
Confidence            99998664332222221111 11123445665 6765555556788999999888652 22211             124


Q ss_pred             CeEEEEeCCCCCCeEEEE
Q 010390          365 EVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       365 ~v~~v~~~~~~~~~l~s~  382 (512)
                      -.+.|+|+|++..+++||
T Consensus       236 vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          236 VLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CEEEEEECTTTCCEEEEE
T ss_pred             ceEEEEEcCCCCEEEEeC
Confidence            679999999885666665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.55  E-value=1.7e-06  Score=74.26  Aligned_cols=191  Identities=10%  Similarity=0.036  Sum_probs=116.9

Q ss_pred             cEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCeeeecccCcCCC-EEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390          110 AIFDLCWIKEDTNILTASGDQ--TIKIWDAEKKKCTGALMGHTGS-IKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      -...+.|+ ++.++.+.+.+|  .|+++|+.+++.+..+...... -..++..  +..+.+..-.++.+.+||..+.+..
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence            35788998 676666777766  8999999999988877543321 2334444  4356666667899999999876644


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                      ..+..                            ..  ....+.+++..++.+. .++.|.++|..+.+.........   
T Consensus       121 ~ti~~----------------------------~~--eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~---  166 (262)
T 3nol_A          121 RSFNY----------------------------DG--EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTA---  166 (262)
T ss_dssp             EEEEC----------------------------SS--CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEECEE---
T ss_pred             EEEEC----------------------------CC--CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEecc---
Confidence            32211                            01  1223336777777755 37789999999887665432100   


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec--------eeceeEEEEEECCCCCEEEEe
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC--------RIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~g  338 (512)
                         .......++.+.+. +|+..+..-.++.|.+.|..+++......+.+-        ........+||+|+++.|++.
T Consensus       167 ---~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT  242 (262)
T 3nol_A          167 ---HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT  242 (262)
T ss_dssp             ---TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred             ---CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence               00011234456776 676554444678999999876543322222211        112346779999998777666


Q ss_pred             cCC
Q 010390          339 SSD  341 (512)
Q Consensus       339 ~~d  341 (512)
                      +..
T Consensus       243 GK~  245 (262)
T 3nol_A          243 GKL  245 (262)
T ss_dssp             ETT
T ss_pred             CCC
Confidence            644

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.54  E-value=0.0002  Score=74.14  Aligned_cols=298  Identities=11%  Similarity=0.025  Sum_probs=164.4

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT  131 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~  131 (512)
                      .|.+|..   .++|.+.+ |+.+ -+.+||..+.....  ...    ............|.++...++|. |..|+..+-
T Consensus       212 ~i~~i~~---d~~g~lwi-gt~~-Gl~~~d~~~~~~~~--~~~----~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~G  279 (781)
T 3v9f_A          212 DVRCIYK---DTNGNIWI-GTSK-GLALFNANTETFTN--FHN----NPGNIHGALSSYIFSIKQLKDNK-LWIATELNG  279 (781)
T ss_dssp             SEEEEEE---CTTCCEEE-EETT-EEEEEETTTTEEEC-----------------CCCCEEEEEECTTSE-EEEEESSSC
T ss_pred             ceeEEEE---cCCCCEEE-EeCC-cHheECCCCCcEEE--EEc----CCCccccccCceEEEEEECCCCC-EEEEeCCCC
Confidence            3555555   67776554 4444 58889876542110  000    00000011246799999887765 555666455


Q ss_pred             EEEEeCCCCeeeeccc--------------CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          132 IKIWDAEKKKCTGALM--------------GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       132 i~iwd~~~~~~~~~~~--------------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      |.++|..+++......              .....|.++...+++  .|..|+.++-|..++.............     
T Consensus       280 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~-----  352 (781)
T 3v9f_A          280 IMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFHTWSYSP-----  352 (781)
T ss_dssp             EEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCEEEC--------
T ss_pred             eEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcceeeccCc-----
Confidence            8899987765322111              134579999888765  3666776777888887654321100000     


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                 .  ...........|.++...+++...+  |+.++-|..||..+.......  .      ........|
T Consensus       353 -----------~--~~~~~~l~~~~v~~i~~d~~g~lWi--gt~~~Gl~~~~~~~~~~~~~~--~------~~~~~~~~v  409 (781)
T 3v9f_A          353 -----------T--QMNESSLSNKVVSSVCDDGQGKLWI--GTDGGGINVFENGKRVAIYNK--E------NRELLSNSV  409 (781)
T ss_dssp             --------------CCCSSCCSSSCEEEEEECTTSCEEE--EEBSSCEEEEETTEEEEECC-------------CCCSBE
T ss_pred             -----------c--ccccCCCCCcceEEEEEcCCCCEEE--EeCCCcEEEEECCCCeEEEcc--C------CCCCCCcce
Confidence                       0  0000011234688888888777665  445677889998765432210  0      011223568


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                      .++..++++.+. +|+.++-|..+|..+.   ....+.. ......+.++...+++.+.+. +..| |..|+..+.+.. 
T Consensus       410 ~~i~~d~~g~lW-igt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~~~~-  482 (781)
T 3v9f_A          410 LCSLKDSEGNLW-FGTYLGNISYYNTRLK---KFQIIELEKNELLDVRVFYEDKNKKIWIG-THAG-VFVIDLASKKVI-  482 (781)
T ss_dssp             EEEEECTTSCEE-EEETTEEEEEECSSSC---EEEECCSTTTCCCCEEEEEECTTSEEEEE-ETTE-EEEEESSSSSCC-
T ss_pred             EEEEECCCCCEE-EEeccCCEEEEcCCCC---cEEEeccCCCCCCeEEEEEECCCCCEEEE-ECCc-eEEEeCCCCeEE-
Confidence            899988887644 4666677888886432   1222211 112245677888887775554 4444 889988765432 


Q ss_pred             ceeccc-----cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          357 IKLKSH-----DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       357 ~~~~~h-----~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      ......     ...|.++...+++ .+. .|+.++-|..||..+++...
T Consensus       483 ~~~~~~~~~~~~~~i~~i~~d~~g-~lW-igt~~~Gl~~~~~~~~~~~~  529 (781)
T 3v9f_A          483 HHYDTSNSQLLENFVRSIAQDSEG-RFW-IGTFGGGVGIYTPDMQLVRK  529 (781)
T ss_dssp             EEECTTTSSCSCSCEEEEEECTTC-CEE-EEESSSCEEEECTTCCEEEE
T ss_pred             ecccCcccccccceeEEEEEcCCC-CEE-EEEcCCCEEEEeCCCCeEEE
Confidence            111111     3579999998887 444 44543447778887765443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.53  E-value=2.1e-06  Score=73.74  Aligned_cols=189  Identities=11%  Similarity=0.044  Sum_probs=116.4

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCE--EEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSI--KSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      .-...+.|+ ++.+.++.+.+|.|+++|+++++.+..+ -. ...  ..+++.  +..+.+..-.++.+.+||..+.+..
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence            345788887 4566668888899999999999988777 22 233  335554  4466677777899999999876543


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES  266 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  266 (512)
                      ..+.                           . ...-..+  .+++..++.+. .++.|.++|..+.+.........   
T Consensus       130 ~ti~---------------------------~-~~eGwGL--t~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~---  175 (268)
T 3nok_A          130 RTTR---------------------------Y-SGEGWGL--CYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKL---  175 (268)
T ss_dssp             EEEE---------------------------C-SSCCCCE--EEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEE---
T ss_pred             EEEe---------------------------C-CCceeEE--ecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCC---
Confidence            3221                           0 1111233  35678888765 48899999999887665432110   


Q ss_pred             cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee---------ceeceeEEEEEECCCCCEEEE
Q 010390          267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG---------CRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~~~l~~  337 (512)
                         .......++.+.|. +|...+..-.++.|.+.|..+++......+.+         .........+|++|+++.|+.
T Consensus       176 ---~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV  251 (268)
T 3nok_A          176 ---RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM  251 (268)
T ss_dssp             ---TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred             ---CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence               00111234566766 66555444467899999987654333222221         112235678999998666555


Q ss_pred             ecC
Q 010390          338 GSS  340 (512)
Q Consensus       338 g~~  340 (512)
                      .+.
T Consensus       252 TGK  254 (268)
T 3nok_A          252 TGK  254 (268)
T ss_dssp             EET
T ss_pred             eCC
Confidence            443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.50  E-value=9e-05  Score=69.39  Aligned_cols=230  Identities=9%  Similarity=-0.066  Sum_probs=136.3

Q ss_pred             EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeeec
Q 010390           67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTGA  145 (512)
Q Consensus        67 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~  145 (512)
                      +|+.+. ...|+.+++.....              ..+......+..++|.+.+..|+ +-...+.|..+++........
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~--------------~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  153 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEY--------------TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  153 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCC--------------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred             eeEeec-CccceeeccCCCcE--------------EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence            444433 35688888765432              11222335688999998666555 545678899999877654333


Q ss_pred             ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      +.........+++.+.++.++++-...+.|.+.++.......                           ...........
T Consensus       154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~---------------------------l~~~~l~~P~g  206 (386)
T 3v65_B          154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---------------------------LLWQSLEKPRA  206 (386)
T ss_dssp             ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE---------------------------EECSSCSCEEE
T ss_pred             EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE---------------------------eecCCCCCCcE
Confidence            332233456788887665666776667788888876432110                           01112235788


Q ss_pred             EEEeecCCEEEEEeecC-CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEc
Q 010390          226 VLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNV  303 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~  303 (512)
                      +++.|.+..++.+...+ +.|..+++........           ..........|++++++..|+.+. ..+.|..+|+
T Consensus       207 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-----------~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          207 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-----------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE-----------ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             EEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE-----------EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            99999888777765445 7788888765432221           111223467899998766666554 5678999997


Q ss_pred             ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      .....   ..+.... ......+++ ..+.++++-...+.|..++..+++.
T Consensus       276 dG~~~---~~~~~~~-~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          276 DGSHR---KAVISQG-LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             TSCSC---EEEECSS-CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCCee---EEEEECC-CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence            54221   1111111 122345666 3445556666677788888555544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.50  E-value=0.00058  Score=61.94  Aligned_cols=231  Identities=8%  Similarity=-0.045  Sum_probs=134.4

Q ss_pred             EEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCC----Cee
Q 010390           68 FAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEK----KKC  142 (512)
Q Consensus        68 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~----~~~  142 (512)
                      |+.+. ...|+..|+++...             .. +........+++|.+.+..|+ +-..++.|..+++..    ...
T Consensus         4 ll~~~-~~~I~~i~~~~~~~-------------~~-~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~   68 (316)
T 1ijq_A            4 LFFTN-RHEVRKMTLDRSEY-------------TS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY   68 (316)
T ss_dssp             EEEEC-BSSEEEEETTSCCC-------------EE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred             EEEEC-CCeEEEEECCCcce-------------Ee-hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence            44443 34688899876532             11 112345688999998766555 445568999999876    222


Q ss_pred             eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390          143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS  222 (512)
Q Consensus       143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (512)
                      ...+...-.....+++.+.+++++++-...+.|.+.++.......                           ........
T Consensus        69 ~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~---------------------------~~~~~~~~  121 (316)
T 1ijq_A           69 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---------------------------LFRENGSK  121 (316)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE---------------------------EEECTTCC
T ss_pred             EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEE---------------------------EEECCCCC
Confidence            222222223557888887664666676777899999876432100                           00111235


Q ss_pred             EEEEEEeecCCEEEEEeecC-CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEE
Q 010390          223 ITSVLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYL  300 (512)
Q Consensus       223 v~~~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  300 (512)
                      ...++++|.+..++.+.... +.|...++........           ..........+++++++..|+.+. ..+.|..
T Consensus       122 P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~-----------~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~  190 (316)
T 1ijq_A          122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-----------VTENIQWPNGITLDLLSGRLYWVDSKLHSISS  190 (316)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-----------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEE-----------EECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence            78899999777777665333 6888888764322111           111224577899998877776665 5579999


Q ss_pred             EEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      +|+.......+  ............+++. .+.++++-...+.|..++..+++.
T Consensus       191 ~d~dg~~~~~~--~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          191 IDVNGGNRKTI--LEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             EETTSCSCEEE--EECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             EecCCCceEEE--eecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence            99864222111  1111111223456664 355556666677888888766554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.49  E-value=1.3e-05  Score=81.03  Aligned_cols=288  Identities=9%  Similarity=0.019  Sum_probs=142.2

Q ss_pred             cC-CCcEEEEeeCCC-----------cEEEEECCCCCCccccccccccccceecc-ccCCCcEEEEEEecCCCEEEEEeC
Q 010390           62 SK-NSHIFAVSDEDG-----------YVSLFDSRRKLPSFACHRENAEKARISDW-VAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        62 s~-~~~~latg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      .+ ++++++.|+.+.           .+.+||..+.....           +..+ ..+.....++++..+++.++.|+.
T Consensus       194 ~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~-----------~~~~~~~~~~~~~~~~~~~~g~lyv~GG~  262 (656)
T 1k3i_A          194 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD-----------RTVTVTKHDMFCPGISMDGNGQIVVTGGN  262 (656)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC-----------CEEEECSCCCSSCEEEECTTSCEEEECSS
T ss_pred             EecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe-----------CcccCCCCCCccccccCCCCCCEEEeCCC
Confidence            56 889999887543           58899987764311           1111 122333445677789999999884


Q ss_pred             -CCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEe-CC-----CcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          129 -DQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGS-RD-----GSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       129 -dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                       +..+.+||..+++-...-..+. ..-.+++..+++ ++++.|+ .+     ..+.+||..+..-.......        
T Consensus       263 ~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~--------  333 (656)
T 1k3i_A          263 DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAK--------  333 (656)
T ss_dssp             STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSC--------
T ss_pred             CCCceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCcc--------
Confidence             5689999988775433211111 112344555666 7888888 34     46889998754311100000        


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc----cccccC
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK----ETRLHG  276 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~  276 (512)
                        ..... .... .........+..+.. .++..+. .+ ....+..||..+......... .     ..    ......
T Consensus       334 --~~p~~-~~~~-~~~~~~~~~iyv~Gg-~~g~~~~-~~-~~~~v~~yd~~~~~w~~~~~~-~-----~~~~~~~~~~~~  400 (656)
T 1k3i_A          334 --VNPML-TADK-QGLYRSDNHAWLFGW-KKGSVFQ-AG-PSTAMNWYYTSGSGDVKSAGK-R-----QSNRGVAPDAMC  400 (656)
T ss_dssp             --SGGGC-CCCT-TGGGTTTCSCCEEEC-GGGCEEE-CC-SSSEEEEEECSTTCEEEEEEE-C-----EETTEECCCCBT
T ss_pred             --ccccc-cccc-cceeecCCceEEEEC-CCCcEEE-ec-CccceeeeecCCcceeecCCc-c-----ccccccCCCCCC
Confidence              00000 0000 000001111111111 1222221 12 245678888876543211100 0     00    000011


Q ss_pred             eeEEEeC-CCCCEEEEEecCC-----------eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC---
Q 010390          277 ISSLSQD-SNGVFLTASCMDH-----------RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD---  341 (512)
Q Consensus       277 i~~~~~~-~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---  341 (512)
                      -.++.+. .++++++.|+.++           .|.+||........+. ............++..|++++++.|+.+   
T Consensus       401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~  479 (656)
T 1k3i_A          401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGI  479 (656)
T ss_dssp             CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred             CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence            2334443 3678888887542           6777776542211111 0011111112234666899999999854   


Q ss_pred             --------CCEEEEecCCCCCC-CceeccccCCeEEEEeCCCCCCeEEEEeC
Q 010390          342 --------GNAYVWQVNKPQAD-PIKLKSHDGEVTAVNWCPNEAGKIVTSSD  384 (512)
Q Consensus       342 --------g~i~iw~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~l~s~~~  384 (512)
                              ..+.+||..+.+-. ...+........+..+.+++ ++++.||.
T Consensus       480 ~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg-~v~v~GG~  530 (656)
T 1k3i_A          480 PFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDG-RVFNGGGG  530 (656)
T ss_dssp             TTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTS-CEEEEECC
T ss_pred             CcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCc-EEEecCCC
Confidence                    46899998765321 11111112223345567888 89999885

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.48  E-value=4.3e-05  Score=78.42  Aligned_cols=252  Identities=10%  Similarity=0.014  Sum_probs=130.0

Q ss_pred             cCCC-cEEEEEEe-cCCCEEEEEeC-CC----cEEEEeCCCC-eeeec-ccCcCCCEEEEEeeCCCCCeEEEEeCC----
Q 010390          106 AHQN-AIFDLCWI-KEDTNILTASG-DQ----TIKIWDAEKK-KCTGA-LMGHTGSIKSLCSHPTNSDILVSGSRD----  172 (512)
Q Consensus       106 ~h~~-~V~~l~~s-~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~d----  172 (512)
                      +|.- .+...+|| |||++|+.+.. +|    +|+++|+.++ +.+.. +.   .....++|+|++ +.|+....|    
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg-~~l~y~~~d~~~~  245 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDH-TSLFYVTKDETLR  245 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSST-TEEEEEEECTTCC
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCC-CEEEEEEECCCCC
Confidence            3443 68889999 99999884432 33    5999999998 63221 11   113467899998 555554544    


Q ss_pred             -CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec--CCeEEEEe
Q 010390          173 -GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV--NSIVKFWD  249 (512)
Q Consensus       173 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~--dg~i~iwd  249 (512)
                       ..|.++++.++.....     .+.                   ..........+.|+||++.|+.....  ...|.++|
T Consensus       246 ~~~v~~~~lgt~~~~~~-----lv~-------------------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d  301 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDV-----CLY-------------------EEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLD  301 (751)
T ss_dssp             EEEEEEEETTSCGGGCE-----EEE-------------------ECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred             CCEEEEEECCCCchhcE-----EEE-------------------ecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEE
Confidence             2577777754321100     000                   00112245678999999998876532  34688888


Q ss_pred             ccCcccee--cccCCCccccccccccccCeeEEEeCCCCCEEEEEecC----CeEEEEEcccCCCCceEe-eeeceecee
Q 010390          250 TRNLKAQI--TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD----HRIYLYNVLQLDKGPIQH-FSGCRIESF  322 (512)
Q Consensus       250 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~-~~~~~~~~~  322 (512)
                      +.++....  ...         .........++.|+.++.+++.+..+    ..|..+|+...  ..... +..+.....
T Consensus       302 ~~~~~~~~~~~~l---------~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~--~~~~~~li~~~~~~~  370 (751)
T 2xe4_A          302 LRKGNAHNTLEIV---------RPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP--SDWSHVLVDHSEDVF  370 (751)
T ss_dssp             SSSCTTCCCEEES---------SCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTST--TCCCCEEECCCSSEE
T ss_pred             CCCCCCCceeEEe---------ecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc--ccceeeEECCCCCcE
Confidence            87652111  111         11112334455554444444554443    36777776432  11111 111211222


Q ss_pred             EEEEEECCCCCEEEEecCCCCE--EEEec-------CCCCCCCceec-cccCCeEEEEe----CCCCCCeEEEEeCC---
Q 010390          323 YVKSEICPNASHILSGSSDGNA--YVWQV-------NKPQADPIKLK-SHDGEVTAVNW----CPNEAGKIVTSSDD---  385 (512)
Q Consensus       323 ~~~~~~s~~~~~l~~g~~dg~i--~iw~~-------~~~~~~~~~~~-~h~~~v~~v~~----~~~~~~~l~s~~~d---  385 (512)
                      +..+.+. .+.++++...++..  +++++       .++.. ...+. .....+..+.+    ++++..++++.+..   
T Consensus       371 l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~-~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P  448 (751)
T 2xe4_A          371 MESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTG-LREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATP  448 (751)
T ss_dssp             EEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTC-CEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEE
T ss_pred             EEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCcc-ceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCC
Confidence            3344554 23455666667764  45554       22220 12221 11122444543    34664555555433   


Q ss_pred             CcEEEEeCCCCcc
Q 010390          386 YTVRLWSLENSRC  398 (512)
Q Consensus       386 g~i~vwd~~~~~~  398 (512)
                      ..+..+|+.+++.
T Consensus       449 ~~~~~~d~~~~~~  461 (751)
T 2xe4_A          449 NTWFDVSPQDHSR  461 (751)
T ss_dssp             EEEEEECTTTCCE
T ss_pred             CEEEEEECCCCcE
Confidence            4677888877653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.46  E-value=0.00015  Score=66.87  Aligned_cols=233  Identities=7%  Similarity=-0.097  Sum_probs=141.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      +|+.+. ...|+..++........+.. ...+..++|.+.++.++++-...+.|..+++........             
T Consensus        46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-------------  110 (349)
T 3v64_C           46 VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-------------  110 (349)
T ss_dssp             EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-------------
T ss_pred             eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE-------------
Confidence            444443 34588888876554443433 345889999987746666666778899998875432110             


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                    ..........+++.+.+..++.+....+.|.+.++........           ..........++
T Consensus       111 --------------~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-----------~~~~l~~P~~ia  165 (349)
T 3v64_C          111 --------------VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-----------LWQSLEKPRAIA  165 (349)
T ss_dssp             --------------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------ECTTCSCEEEEE
T ss_pred             --------------EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE-----------EeCCCCCcceEE
Confidence                          0011124577888887777777666678999999875432221           112224468899


Q ss_pred             eCCCCCEEEEEe-cC-CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCCCCCCCce
Q 010390          282 QDSNGVFLTASC-MD-HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS-GSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       282 ~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      ++|.+..|+.+. .. +.|..+++.....   ..+... .......+++++++..|.. -...+.|..+++..... ...
T Consensus       166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~---~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~  240 (349)
T 3v64_C          166 LHPMEGTIYWTDWGNTPRIEASSMDGSGR---RIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAV  240 (349)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSCSC---EESCCS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE
T ss_pred             EecCcCeEEEeccCCCCEEEEEeCCCCCc---EEEEEC-CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEE
Confidence            998665555544 44 7888888754221   111111 1123567999987666644 44567899999875432 222


Q ss_pred             eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ....-....++++. .+ .++++-...+.|...+..+|+....
T Consensus       241 ~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          241 ISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKNQEI  281 (349)
T ss_dssp             ECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCCccEE
Confidence            33334467788883 34 5777777788899888766665444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.45  E-value=1.8e-05  Score=67.45  Aligned_cols=194  Identities=11%  Similarity=-0.025  Sum_probs=116.0

Q ss_pred             eeecccCcC--CCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc
Q 010390          142 CTGALMGHT--GSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK  217 (512)
Q Consensus       142 ~~~~~~~h~--~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (512)
                      .+.++ .|.  .....+.|+. + .++.+.+.+|  .|+.+|+.+++.......                          
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l--------------------------   61 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEV--------------------------   61 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEEC--------------------------
T ss_pred             EEEEc-CCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeC--------------------------
Confidence            34445 354  3577899986 4 6777777754  899999998865432211                          


Q ss_pred             cccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCe
Q 010390          218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR  297 (512)
Q Consensus       218 ~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  297 (512)
                        ............+..+......++.+.+||..+.+...+...+         .  . -..++  +++..|+++..++.
T Consensus        62 --~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~---------~--~-Gwglt--~dg~~L~vSdgs~~  125 (243)
T 3mbr_X           62 --PPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP---------G--E-GWALT--SDDSHLYMSDGTAV  125 (243)
T ss_dssp             --CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS---------S--C-CCEEE--ECSSCEEEECSSSE
T ss_pred             --CCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC---------C--C-ceEEe--eCCCEEEEECCCCe
Confidence              1112222223345666666668999999999998877654221         1  1 13333  56777777777899


Q ss_pred             EEEEEcccCCCCceEeeeece-eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec-------------ccc
Q 010390          298 IYLYNVLQLDKGPIQHFSGCR-IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK-------------SHD  363 (512)
Q Consensus       298 i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-------------~h~  363 (512)
                      |.++|..+.+........... .-..+..+.+. +|+..+..-.+..|.+.|..+++.. ..+.             .-.
T Consensus       126 l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~-~~idl~~l~~~~~~~~~~~~  203 (243)
T 3mbr_X          126 IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV-AWIDLQALVPDADALTDSTN  203 (243)
T ss_dssp             EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE-EEEECGGGSTTTTSCCCTTS
T ss_pred             EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE-EEEECCcCccccccccCCcC
Confidence            999998764332222221111 11223334544 6665555545778999999887642 2211             112


Q ss_pred             CCeEEEEeCCCCCCeEEEE
Q 010390          364 GEVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l~s~  382 (512)
                      ...+.|+++|++..+++||
T Consensus       204 ~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          204 DVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             SCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEEcCCCCEEEEEC
Confidence            4679999999884555555

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.44  E-value=0.0004  Score=62.97  Aligned_cols=237  Identities=9%  Similarity=-0.051  Sum_probs=142.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      +|+.+.. ..|+..|+.+.+....+. ....+.+++|.+.++.++++-..++.|..+++.........            
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~------------   68 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY------------   68 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C------------
T ss_pred             EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc------------
Confidence            3444433 458999998876555444 34567899999876466666667789999998752100000            


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                 .............+++.+.+..++.+-..++.|.+++.........           ..........++
T Consensus        69 -----------~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~-----------~~~~~~~P~~ia  126 (316)
T 1ijq_A           69 -----------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-----------FRENGSKPRAIV  126 (316)
T ss_dssp             -----------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-----------EECTTCCEEEEE
T ss_pred             -----------EEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE-----------EECCCCCcceEE
Confidence                       0000011134578888877777776666688999999875432211           111223568899


Q ss_pred             eCCCCCEEEEEecC--CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCCCCCCCce
Q 010390          282 QDSNGVFLTASCMD--HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS-GSSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       282 ~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~~~~~~~~  358 (512)
                      ++|.+..|+.+...  +.|..+++...   ....+.... -.....+++++++..|+. -...+.|..+++..... ...
T Consensus       127 vdp~~g~ly~~d~~~~~~I~~~~~dG~---~~~~~~~~~-~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~  201 (316)
T 1ijq_A          127 VDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTI  201 (316)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE
T ss_pred             eCCCCCEEEEEccCCCCeEEEEcCCCC---CeEEEEECC-CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEE
Confidence            99866666555543  68888887432   222221111 234567999987766654 44567899999875332 112


Q ss_pred             ecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          359 LKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       359 ~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ...  .-....++++.. + .++++-...+.|..++..+++.+..
T Consensus       202 ~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          202 LEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNL  244 (316)
T ss_dssp             EECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             eecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCCCCcceEE
Confidence            221  223467788843 4 6777777788999999877765443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.42  E-value=2.3e-05  Score=77.41  Aligned_cols=329  Identities=9%  Similarity=-0.029  Sum_probs=157.6

Q ss_pred             CcEEEEeeC-CCcEEEEEC-CCCCCccccccccccccceeccccCCCcEEEEEEecCCCE----EEEEeCCCcEEEEeCC
Q 010390           65 SHIFAVSDE-DGYVSLFDS-RRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN----ILTASGDQTIKIWDAE  138 (512)
Q Consensus        65 ~~~latg~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~----l~s~~~dg~i~iwd~~  138 (512)
                      +..+.+++. ++.|.-+|. .+++..-.........  .............++++|.+..    |+.++.|+.|..+|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~--~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPA--ARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGG--GGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcc--ccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence            345555665 788888888 6765421110000000  0000000000122445444444    8888889999999999


Q ss_pred             CCeeeecccCcC----CCEEE-EEeeCCCCCeEEEEe------CCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          139 KKKCTGALMGHT----GSIKS-LCSHPTNSDILVSGS------RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       139 ~~~~~~~~~~h~----~~v~~-l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      +|+.+.......    ..+.+ ..+.  + ..++.++      .+|.|+.+|.++++..-....................
T Consensus       140 TG~~~W~~~~~~~~~~~~~~ssP~v~--~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~  216 (599)
T 1w6s_A          140 TGETVWKVENSDIKVGSTLTIAPYVV--K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK  216 (599)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             CCCEEEeecCCCCCccceeecCCEEE--C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence            998876653221    01111 1111  2 3455554      3799999999988765432211100000000000000


Q ss_pred             -c------cccc---ceecccccccE-EEEEEeecCCEEEEEeec---------------CCeEEEEeccCccceecccC
Q 010390          208 -S------QSKR---VSRRKAASMSI-TSVLYLKDEVSIATASAV---------------NSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       208 -~------~~~~---~~~~~~~~~~v-~~~~~~~~~~~l~~~g~~---------------dg~i~iwd~~~~~~~~~~~~  261 (512)
                       .      ....   -.........+ ..+++.+....+++..+.               .+.|..+|.++++.......
T Consensus       217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~  296 (599)
T 1w6s_A          217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK  296 (599)
T ss_dssp             CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred             cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence             0      0000   00000001111 234566666666553322               14799999999988766432


Q ss_pred             CCccccccccccccCeeEEEeC-CCC---CEEEEEecCCeEEEEEcccCCCCceEeeee-------c--eece-------
Q 010390          262 PHAESSSAKETRLHGISSLSQD-SNG---VFLTASCMDHRIYLYNVLQLDKGPIQHFSG-------C--RIES-------  321 (512)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~--~~~~-------  321 (512)
                      .+...- .......++. +... .+|   ..++.++.+|.++++|..+++..-...+..       .  ....       
T Consensus       297 ~~~d~w-d~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~  374 (599)
T 1w6s_A          297 TPHDEW-DYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEY  374 (599)
T ss_dssp             STTCSS-CCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGG
T ss_pred             CCCccc-cccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeecccc
Confidence            211000 0001111111 2221 466   467778899999999986643211111000       0  0000       


Q ss_pred             -------------------eEEEEEECCCCCEEEEe---------------------------------c------CCCC
Q 010390          322 -------------------FYVKSEICPNASHILSG---------------------------------S------SDGN  343 (512)
Q Consensus       322 -------------------~~~~~~~s~~~~~l~~g---------------------------------~------~dg~  343 (512)
                                         ....++++|+..++++.                                 +      ..|.
T Consensus       375 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~  454 (599)
T 1w6s_A          375 GTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQ  454 (599)
T ss_dssp             CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEE
T ss_pred             CCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCe
Confidence                               00124566665555432                                 1      3467


Q ss_pred             EEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       344 i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      |..||+.+++.......+  .++..-.....+ .+++.++.||.|+.||.++|+.+-.+.
T Consensus       455 l~A~D~~tG~~~W~~~~~--~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          455 IKAYNAITGDYKWEKMER--FAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             EEEECTTTCCEEEEEEES--SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCCEEeEecCC--CCccCcceEecC-CEEEEECCCCeEEEEECCCCCEEEEee
Confidence            888888887653222111  111111111234 578889999999999999999876543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.42  E-value=1.1e-05  Score=79.78  Aligned_cols=276  Identities=10%  Similarity=-0.017  Sum_probs=140.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcC----CCEEE-EEeeCCCCCeEEEEeC------CCcEEEEeCCCCCCCCC
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHT----GSIKS-LCSHPTNSDILVSGSR------DGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~-l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~  188 (512)
                      +..|+.++.|+.|..+|..+|+.+.......    ..+.+ ....  + ..++.++.      ++.|..+|..+++..-.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--C-CEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            5678888889999999999998876654211    01111 1111  3 34555554      78999999998876543


Q ss_pred             ccccceeeec----ccccccccc---cccccc---ee-cccccccEEEEEEeecCCEEEEEeec-----------C----
Q 010390          189 NCAESFVFSS----AVVKGAHLL---SQSKRV---SR-RKAASMSITSVLYLKDEVSIATASAV-----------N----  242 (512)
Q Consensus       189 ~~~~~~~~~~----~~~~~~~~~---~~~~~~---~~-~~~~~~~v~~~~~~~~~~~l~~~g~~-----------d----  242 (512)
                      ..........    .........   ......   .. ..........+++.++...+++..+.           +    
T Consensus       192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~  271 (571)
T 2ad6_A          192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence            2211000000    000000000   000000   00 00011111235566655555543321           1    


Q ss_pred             CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC---EEEEEecCCeEEEEEcccCCCCceEeeee---
Q 010390          243 SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV---FLTASCMDHRIYLYNVLQLDKGPIQHFSG---  316 (512)
Q Consensus       243 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---  316 (512)
                      +.|..+|.++++............- .......++. +....+|+   .++.++.+|.++++|..+++..-...+..   
T Consensus       272 ~~v~Ald~~tG~~~W~~~~~~~d~~-d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~  349 (571)
T 2ad6_A          272 MTIWGRDLDTGMAKWGYQKTPHDEW-DFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN  349 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSS-CCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             EEEEEEecCCCcEEEEecCCCCccc-ccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc
Confidence            3699999999888765432211000 0001111111 22224663   57778889999999976643211111110   


Q ss_pred             ----------cee-----------ceeE-----------EEEEECCCCCEEEEec-------------------------
Q 010390          317 ----------CRI-----------ESFY-----------VKSEICPNASHILSGS-------------------------  339 (512)
Q Consensus       317 ----------~~~-----------~~~~-----------~~~~~s~~~~~l~~g~-------------------------  339 (512)
                                ...           ...+           ..++++|+..++++..                         
T Consensus       350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~  429 (571)
T 2ad6_A          350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence                      000           0000           1356778777665543                         


Q ss_pred             ------------CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          340 ------------SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       340 ------------~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                                  .+|.|..||..+++... ... +...+.+..+...+ .+++.++.||.|+.||..+|+.+-.+.
T Consensus       430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W-~~~-~~~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKW-TKW-EKFAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEECTTSTTSCCCEEEEEECTTTCCEEE-EEE-ESSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eeccCccccCCCCCCeEEEEECCCCCEEE-Eec-CCCCccceeEEECC-CEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence                        34789999998876532 222 12222222222234 577789999999999999999876544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.42  E-value=0.0012  Score=62.04  Aligned_cols=232  Identities=8%  Similarity=-0.054  Sum_probs=137.3

Q ss_pred             EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE-eCCCcEEEEeCCCC----e
Q 010390           67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA-SGDQTIKIWDAEKK----K  141 (512)
Q Consensus        67 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~----~  141 (512)
                      +|+.+. ...|+..+++....              ..+......+..|+|++.+..|+-+ ...+.|+.+++...    .
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~--------------~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~  149 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEY--------------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS  149 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSC--------------EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC
T ss_pred             eeEEec-cceeEEEccCCcce--------------eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc
Confidence            444444 45788888875432              1222345678999999866666544 45688999998652    2


Q ss_pred             eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccc
Q 010390          142 CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM  221 (512)
Q Consensus       142 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (512)
                      ....+.........+++.+.+.+++++-...+.|.+.++.......                           .......
T Consensus       150 ~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~---------------------------l~~~~~~  202 (400)
T 3p5b_L          150 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---------------------------LFRENGS  202 (400)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE---------------------------EEECSSC
T ss_pred             ceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE---------------------------EEeCCCC
Confidence            2222332345678899988654677776777889988876432111                           0111223


Q ss_pred             cEEEEEEeecCCEEEEEee-cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEE
Q 010390          222 SITSVLYLKDEVSIATASA-VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIY  299 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  299 (512)
                      ....+++.|.+..++.+-. ..+.|...++........           ..........|++++++..|+.+. ..+.|.
T Consensus       203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~-----------~~~~l~~P~glavd~~~~~lY~aD~~~~~I~  271 (400)
T 3p5b_L          203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-----------VTENIQWPNGITLDLLSGRLYWVDSKLHSIS  271 (400)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE-----------ECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE-----------EECCCCceEEEEEEeCCCEEEEEECCCCEEE
Confidence            5789999997777776542 236788888775433221           111224578899998877777665 457899


Q ss_pred             EEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       300 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      .+|+.......+.  ...........+++. .+.++++-...+.|..++..+++.
T Consensus       272 ~~d~dG~~~~~~~--~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          272 SIDVNGGNRKTIL--EDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             EEETTSCCCEEEE--ECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred             EEeCCCCccEEEE--eCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence            9998543222221  111111223345552 344555656667888888666654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.41  E-value=0.00011  Score=69.80  Aligned_cols=253  Identities=9%  Similarity=0.017  Sum_probs=138.4

Q ss_pred             CCcceEEEEEecCC--CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           51 TPPLAVSFCKTSKN--SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        51 ~~v~~v~~~~~s~~--~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      ..+.+|++   +|+  +..|..+...+.|+.+|..++.              +..+.........++|+++++++++...
T Consensus       139 ~~P~gvav---d~~s~~g~Lyv~D~~~~I~~id~~~g~--------------v~~~~~~~~~P~giavd~dG~lyVad~~  201 (433)
T 4hw6_A          139 DNIWRMMF---DPNSNYDDLYWVGQRDAFRHVDFVNQY--------------VDIKTTNIGQCADVNFTLNGDMVVVDDQ  201 (433)
T ss_dssp             SCCCEEEE---CTTTTTCEEEEECBTSCEEEEETTTTE--------------EEEECCCCSCEEEEEECTTCCEEEEECC
T ss_pred             CCCceEEE---ccccCCCEEEEEeCCCCEEEEECCCCE--------------EEEeecCCCCccEEEECCCCCEEEEcCC
Confidence            34667877   884  3344444434899999986553              2333334567899999999994444331


Q ss_pred             C---Cc-EEEEeCCCCee-eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          129 D---QT-IKIWDAEKKKC-TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       129 d---g~-i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      .   .. +...+...+.. ...+. .-.....+++.|+++.++++-..++.|+.+|..++......      .       
T Consensus       202 ~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~------~-------  267 (433)
T 4hw6_A          202 SSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE------V-------  267 (433)
T ss_dssp             SCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE------E-------
T ss_pred             CCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE------e-------
Confidence            1   11 33333222111 01111 12344567888844366666667788999988644320000      0       


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC--ccce--ecccC--CCcccc--cccccccc
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN--LKAQ--ITQAW--PHAESS--SAKETRLH  275 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~--~~~~--~~~~~--~~~~~~--~~~~~~~~  275 (512)
                                 . .........++++|+++.|+++-..++.|..++...  +...  .....  ......  ........
T Consensus       268 -----------~-~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~  335 (433)
T 4hw6_A          268 -----------M-MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLW  335 (433)
T ss_dssp             -----------E-CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCS
T ss_pred             -----------c-cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEc
Confidence                       0 000112346999999997877776788999988653  2110  00000  000000  00011123


Q ss_pred             CeeEEEe---------CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece----------------eceeEEEEEEC-
Q 010390          276 GISSLSQ---------DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR----------------IESFYVKSEIC-  329 (512)
Q Consensus       276 ~i~~~~~---------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~s-  329 (512)
                      ....+++         .+++.++++-...+.|+.++..    ..+..+.+..                .-.....++++ 
T Consensus       336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~----G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~  411 (433)
T 4hw6_A          336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE----GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDM  411 (433)
T ss_dssp             SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT----SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEET
T ss_pred             CCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC----CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEEC
Confidence            4667888         7777777776677899999842    1222222210                01235668888 


Q ss_pred             CCCCEEEEecCCCCEEEEecC
Q 010390          330 PNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       330 ~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      +++.++++-..++.|+.++++
T Consensus       412 ~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          412 KRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEecC
Confidence            667666666667778887754

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=9.6e-05  Score=70.23  Aligned_cols=250  Identities=11%  Similarity=0.096  Sum_probs=138.1

Q ss_pred             CcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-C
Q 010390           52 PPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-D  129 (512)
Q Consensus        52 ~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-d  129 (512)
                      .+..|++   +| ++..|.++...+.|+.+|.++..              +..+.........++|++++++|+.+.. +
T Consensus       138 ~P~~lav---dp~~~g~Lyv~d~~~~I~~id~~~~~--------------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~  200 (430)
T 3tc9_A          138 GAVWLSF---DPKNHNHLYLVGEQHPTRLIDFEKEY--------------VSTVYSGLSKVRTICWTHEADSMIITNDQN  200 (430)
T ss_dssp             CCCEEEE---ETTEEEEEEEEEBTEEEEEEETTTTE--------------EEEEECCCSCEEEEEECTTSSEEEEEECCS
T ss_pred             CCCEEEE---CCCCCCeEEEEeCCCcEEEEECCCCE--------------EEEEecCCCCcceEEEeCCCCEEEEEeCCC
Confidence            4566776   87 45556666555889999987643              2222234567889999999996666554 2


Q ss_pred             C----cEEEEeCCCCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          130 Q----TIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       130 g----~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      +    .+.+.+ ..+...  ..+. .......++++|+++.++++-..++.|..++.........               
T Consensus       201 ~~~~~~v~~~~-~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~---------------  263 (430)
T 3tc9_A          201 NNDRPNNYILT-RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPL---------------  263 (430)
T ss_dssp             CTTSEEEEEEE-GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEE---------------
T ss_pred             CcccceEEEEe-CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEE---------------
Confidence            2    233344 333221  2222 1234567889995447777766778999999874321000               


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce----ecccC--CCcccc--cccccccc
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ----ITQAW--PHAESS--SAKETRLH  275 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~----~~~~~--~~~~~~--~~~~~~~~  275 (512)
                                 ...........++++|+++.++++...++.|..++.+.....    .....  ......  ........
T Consensus       264 -----------~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~  332 (430)
T 3tc9_A          264 -----------FTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMH  332 (430)
T ss_dssp             -----------EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBS
T ss_pred             -----------EEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeC
Confidence                       000111346789999999977777767889999887642111    00000  000000  00000111


Q ss_pred             Cee-EEEeC--------CCCCEEEEEecCCeEEEEEcccCCCCceEeeeec---------e-------eceeEEEEEECC
Q 010390          276 GIS-SLSQD--------SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC---------R-------IESFYVKSEICP  330 (512)
Q Consensus       276 ~i~-~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~-------~~~~~~~~~~s~  330 (512)
                      ... .++..        +++.+.++-...+.|+.++..    ..+..+.+.         .       .-.....+++++
T Consensus       333 ~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~----G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~  408 (430)
T 3tc9_A          333 APRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ----GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE  408 (430)
T ss_dssp             SEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT----SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred             CCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC----CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence            222 44443        445555555566788888732    122222221         0       012456789998


Q ss_pred             C-CCEEEEecCCCCEEEEecC
Q 010390          331 N-ASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       331 ~-~~~l~~g~~dg~i~iw~~~  350 (512)
                      + +.++++-..++.|+.++++
T Consensus       409 ~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          409 ERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEEECCCCeEEEEccC
Confidence            4 6666666666778887754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.38  E-value=1.7e-05  Score=80.00  Aligned_cols=257  Identities=12%  Similarity=0.122  Sum_probs=134.9

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC------CCcEEEEeCC
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG------DQTIKIWDAE  138 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------dg~i~iwd~~  138 (512)
                      +..+++++.||.|..+|..+++..-.......    .........++.     .++ .++.+..      +|.|..+|..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~----~~~~~~~~~P~v-----~~~-~v~vg~~~~~~~~~g~v~a~D~~  186 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP----AKPYSITGAPRV-----VKG-KVIIGNGGAEYGVRGFVSAYDAD  186 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCT----TSSCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCC----CCcceecCCCEE-----ECC-EEEEeCCCCCcCCCCEEEEEECC
Confidence            45788888899999999988764211100000    000000111211     134 4554433      5899999999


Q ss_pred             CCeeeecccCcC-------------------------------CCEEEEEeeCCCCCeEEEEeCCCc-------------
Q 010390          139 KKKCTGALMGHT-------------------------------GSIKSLCSHPTNSDILVSGSRDGS-------------  174 (512)
Q Consensus       139 ~~~~~~~~~~h~-------------------------------~~v~~l~~~~~~~~~l~s~~~dg~-------------  174 (512)
                      +|+.+..+....                               .....+++.|+. .+++.+..++.             
T Consensus       187 tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd  265 (668)
T 1kv9_A          187 TGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGD  265 (668)
T ss_dssp             TCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCC
T ss_pred             CCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCC
Confidence            999877664210                               011236777776 67777776653             


Q ss_pred             ------EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC--EEEEEeecCCeEE
Q 010390          175 ------FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV--SIATASAVNSIVK  246 (512)
Q Consensus       175 ------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~g~~dg~i~  246 (512)
                            |..+|..+++..-......           +      ..... ....+........+++  .+++.++.+|.++
T Consensus       266 ~l~~~~v~AlD~~tG~~~W~~~~~~-----------~------~~wd~-~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~  327 (668)
T 1kv9_A          266 NLYLSSILAIRPDTGKLAWHYQVTP-----------G------DSWDF-TATQQITLAELNIDGKPRKVLMQAPKNGFFY  327 (668)
T ss_dssp             CTTTTEEEEECTTTCCEEEEEESST-----------T------CCSCC-CCCSCEEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred             ceeeeeEEEEcCCCCceeeEeecCC-----------C------ccccc-cCCCCcEEEEeccCCcEEEEEEEECCCCEEE
Confidence                  8888888776433221100           0      00000 0011222223333554  2344567899999


Q ss_pred             EEeccCccceecccCCCc-----------ccc----ccccc--------c--ccCeeEEEeCCCCCEEEEEe--------
Q 010390          247 FWDTRNLKAQITQAWPHA-----------ESS----SAKET--------R--LHGISSLSQDSNGVFLTASC--------  293 (512)
Q Consensus       247 iwd~~~~~~~~~~~~~~~-----------~~~----~~~~~--------~--~~~i~~~~~~~~~~~l~~~~--------  293 (512)
                      ++|..+++.+........           .+.    .....        .  ...-..++++|+..++++..        
T Consensus       328 ~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~  407 (668)
T 1kv9_A          328 VLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYR  407 (668)
T ss_dssp             EEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEC
T ss_pred             EEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEee
Confidence            999999887633221110           000    00000        0  00012367777766655421        


Q ss_pred             ----------------------------cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEE
Q 010390          294 ----------------------------MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAY  345 (512)
Q Consensus       294 ----------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  345 (512)
                                                  .+|.|..||+.+++..  -......   ......+...+.+++.|+.|+.++
T Consensus       408 ~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~--W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~  482 (668)
T 1kv9_A          408 NEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA--WKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMH  482 (668)
T ss_dssp             CCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE--EEEEESS---SCCCCEEEETTTEEEEECTTSEEE
T ss_pred             eeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEE--EEccCCC---CCcCceeEeCCCEEEEECCcccch
Confidence                                        2377888998664322  1111110   111122334678888999999999


Q ss_pred             EEecCCCCCC
Q 010390          346 VWQVNKPQAD  355 (512)
Q Consensus       346 iw~~~~~~~~  355 (512)
                      .||..+++..
T Consensus       483 a~d~~tG~~l  492 (668)
T 1kv9_A          483 AYSADKGEAL  492 (668)
T ss_dssp             EEETTTCCEE
T ss_pred             hhhhhcChhh
Confidence            9999988763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.37  E-value=0.00016  Score=67.69  Aligned_cols=234  Identities=7%  Similarity=-0.102  Sum_probs=143.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      .+|+.+. ...|+..++........+.. ...+..++|.+.++.++++-...+.|..+++.......             
T Consensus        88 ~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------  152 (386)
T 3v65_B           88 PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------  152 (386)
T ss_dssp             CEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------
T ss_pred             ceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------
Confidence            3444443 45688889877654444433 34688999998764666666677889999887543111             


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                    ...........+++.+.+..++.+....+.|.+.++........           ..........+
T Consensus       153 --------------~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l-----------~~~~l~~P~gi  207 (386)
T 3v65_B          153 --------------VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-----------LWQSLEKPRAI  207 (386)
T ss_dssp             --------------EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE-----------ECSSCSCEEEE
T ss_pred             --------------EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe-----------ecCCCCCCcEE
Confidence                          00011124567888887777777666677888888765432211           11222456889


Q ss_pred             EeCCCCCEEEEEe-cC-CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE-EecCCCCEEEEecCCCCCCCc
Q 010390          281 SQDSNGVFLTASC-MD-HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL-SGSSDGNAYVWQVNKPQADPI  357 (512)
Q Consensus       281 ~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~  357 (512)
                      +++|.+..|+.+. .. +.|..+++....   ...+.... ......++++|++..|+ +-...+.|..+++..... ..
T Consensus       208 avdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~  282 (386)
T 3v65_B          208 ALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KA  282 (386)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCS---CEEEECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EE
T ss_pred             EEEcCCCeEEEeccCCCCEEEEEeCCCCC---cEEEEECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EE
Confidence            9998766666554 33 688888875422   11221111 12356799998766554 445567899999875432 22


Q ss_pred             eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ..........++++ ..+ .++++-...+.|..++..+++....
T Consensus       283 ~~~~~~~~P~giav-~~~-~ly~td~~~~~V~~~~~~~G~~~~~  324 (386)
T 3v65_B          283 VISQGLPHPFAITV-FED-SLYWTDWHTKSINSANKFTGKNQEI  324 (386)
T ss_dssp             EECSSCSSEEEEEE-ETT-EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EEECCCCCceEEEE-ECC-EEEEeeCCCCeEEEEECCCCcceEE
Confidence            33333446778888 334 5777777888999999767765544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.36  E-value=9.3e-06  Score=82.12  Aligned_cols=249  Identities=8%  Similarity=-0.008  Sum_probs=130.1

Q ss_pred             EEEEec-CCCEEEEEeCCC-----------cEEEEeCCCCeeee--ccc-CcCCCEEEEEeeCCCCCeEEEEeC-CCcEE
Q 010390          113 DLCWIK-EDTNILTASGDQ-----------TIKIWDAEKKKCTG--ALM-GHTGSIKSLCSHPTNSDILVSGSR-DGSFA  176 (512)
Q Consensus       113 ~l~~s~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~--~~~-~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~  176 (512)
                      .+++.+ +++.++.|+.+.           .+.+||..+++...  .+. .+.....++++..++ .+++.|+. +..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceE
Confidence            556777 888888887643           58899998875432  221 122333456677776 88888884 45899


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-----CeEEEEecc
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-----SIVKFWDTR  251 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-----g~i~iwd~~  251 (512)
                      +||..+.+-....                         .... ...-.+++..++++.+++.|..+     ..+.+||..
T Consensus       269 ~yd~~t~~W~~~~-------------------------~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          269 LYDSSSDSWIPGP-------------------------DMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             EEEGGGTEEEECC-------------------------CCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             EecCcCCceeECC-------------------------CCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            9998754311100                         0000 11112345556788777755233     468999998


Q ss_pred             CccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---------CeEEEEEcccCCCCceEeeeecee---
Q 010390          252 NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---------HRIYLYNVLQLDKGPIQHFSGCRI---  319 (512)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~---  319 (512)
                      +.+-......... +   ......   ...+..++..++.++.+         ..+..||......  .........   
T Consensus       323 t~~W~~~~~~~~~-p---~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w--~~~~~~~~~~~~  393 (656)
T 1k3i_A          323 SKTWTSLPNAKVN-P---MLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD--VKSAGKRQSNRG  393 (656)
T ss_dssp             TTEEEEETTSCSG-G---GCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE--EEEEEECEETTE
T ss_pred             CCcceeCCCcccc-c---cccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcce--eecCCccccccc
Confidence            7653321100000 0   000000   01122344444555444         4567788754321  111111111   


Q ss_pred             ----ceeEEEEEEC-CCCCEEEEecCCC-----------CEEEEecCCCCCCCcee---ccccCC-eEEEEeCCCCCCeE
Q 010390          320 ----ESFYVKSEIC-PNASHILSGSSDG-----------NAYVWQVNKPQADPIKL---KSHDGE-VTAVNWCPNEAGKI  379 (512)
Q Consensus       320 ----~~~~~~~~~s-~~~~~l~~g~~dg-----------~i~iw~~~~~~~~~~~~---~~h~~~-v~~v~~~~~~~~~l  379 (512)
                          ...-.++.|. .++++++.|+.++           .|.+||..+..-.  ..   ..+... -.+++..|++ +++
T Consensus       394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~--~~~~~~mp~~R~~~~~~~l~~g-~i~  470 (656)
T 1k3i_A          394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT--VFASNGLYFARTFHTSVVLPDG-STF  470 (656)
T ss_dssp             ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE--EECTTCCSSCCBSCEEEECTTS-CEE
T ss_pred             cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee--EEccCCCCCCcccCCeEECCCC-CEE
Confidence                0112233443 4678888887532           5777777654321  11   111121 2334566788 899


Q ss_pred             EEEeCC-----------CcEEEEeCCCCcccc
Q 010390          380 VTSSDD-----------YTVRLWSLENSRCSS  400 (512)
Q Consensus       380 ~s~~~d-----------g~i~vwd~~~~~~~~  400 (512)
                      +.||.+           ..+.+||..+++...
T Consensus       471 v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~  502 (656)
T 1k3i_A          471 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK  502 (656)
T ss_dssp             EECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred             EECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence            998854           468899998776544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.35  E-value=9.6e-05  Score=62.94  Aligned_cols=199  Identities=8%  Similarity=-0.003  Sum_probs=115.4

Q ss_pred             CccCC--cceEEEEEecCCCcEEEEeeCC--CcEEEEECCCCCCccccccccccccceeccccCCCcE--EEEEEecCCC
Q 010390           48 GEETP--PLAVSFCKTSKNSHIFAVSDED--GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAI--FDLCWIKEDT  121 (512)
Q Consensus        48 gh~~~--v~~v~~~~~s~~~~~latg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V--~~l~~s~~~~  121 (512)
                      .|...  ...+.|   ++ +.+..+.+.+  ..|+.+|+++++.             +....-. ...  -.+..  .++
T Consensus        16 phd~~~ftqGL~~---~~-~~LyestG~~g~S~v~~vD~~tgkv-------------~~~~~l~-~~~fgeGi~~--~~~   75 (243)
T 3mbr_X           16 PHDTTAFTEGLFY---LR-GHLYESTGETGRSSVRKVDLETGRI-------------LQRAEVP-PPYFGAGIVA--WRD   75 (243)
T ss_dssp             ECCTTCCEEEEEE---ET-TEEEEEECCTTSCEEEEEETTTCCE-------------EEEEECC-TTCCEEEEEE--ETT
T ss_pred             CCCCccccccEEE---EC-CEEEEECCCCCCceEEEEECCCCCE-------------EEEEeCC-CCcceeEEEE--eCC
Confidence            56544  448888   54 5555665654  4899999998754             2222111 122  22333  344


Q ss_pred             EEE-EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          122 NIL-TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       122 ~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      .|. ....++.+.+||..+.+.+.++.... .-+.++  +++..++++ ..++.|.++|..+.+........        
T Consensus        76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~--------  143 (243)
T 3mbr_X           76 RLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVT--------  143 (243)
T ss_dssp             EEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECE--------
T ss_pred             EEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEc--------
Confidence            454 45568999999999999998887433 224554  456344444 55789999998876543221110        


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc--cccccCee
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK--ETRLHGIS  278 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~  278 (512)
                                    .....-..++.+.|. ++. +++....+..|.+.|..+++...........+....  .....-.+
T Consensus       144 --------------~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlN  207 (243)
T 3mbr_X          144 --------------AGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLN  207 (243)
T ss_dssp             --------------ETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEE
T ss_pred             --------------cCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceE
Confidence                          000001234555654 554 444444677999999999887765543221110000  11223578


Q ss_pred             EEEeCCCCCEEEEEec
Q 010390          279 SLSQDSNGVFLTASCM  294 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~  294 (512)
                      .++++|+++.|++.+.
T Consensus       208 GIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          208 GIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEETTTTEEEEEET
T ss_pred             EEEEcCCCCEEEEECC
Confidence            8999998877766653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=0.00017  Score=68.44  Aligned_cols=243  Identities=7%  Similarity=-0.010  Sum_probs=136.5

Q ss_pred             cEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCC-eEEEEeCCC----cEEEEeCCCC
Q 010390          110 AIFDLCWIK-EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSD-ILVSGSRDG----SFAIWDLRCK  183 (512)
Q Consensus       110 ~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~~dg----~i~vwd~~~~  183 (512)
                      ....|+++| ++..|+.+...+.|+.+|+.++....... .......|+|++++ + ++++...++    .+.+.+. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEEeC-CC
Confidence            457889998 45667666655889999998776544333 44568899999988 6 444443322    2333332 22


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      .....                         ..+ ........++++|++..++++...++.|..++..........    
T Consensus       215 ~~~~~-------------------------~~l-~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~----  264 (430)
T 3tc9_A          215 GFKVI-------------------------TEL-TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF----  264 (430)
T ss_dssp             TSCSE-------------------------EEE-EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE----
T ss_pred             ceeee-------------------------eee-ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE----
Confidence            11100                         000 012345678899954455555556789999998865432110    


Q ss_pred             ccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCC--CceEeeeec------e-------eceeEE-EE
Q 010390          264 AESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDK--GPIQHFSGC------R-------IESFYV-KS  326 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~--~~~~~~~~~------~-------~~~~~~-~~  326 (512)
                            ..........++++|++++|+.+ ...+.|..++......  .....+.+.      .       .-.... .+
T Consensus       265 ------~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv  338 (430)
T 3tc9_A          265 ------TIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGT  338 (430)
T ss_dssp             ------ECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEE
T ss_pred             ------EcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceE
Confidence                  11111346789999999965555 4678899988653211  011111111      0       000112 24


Q ss_pred             EE--------CCCCCEEEEecCCCCEEEEecCCCCCCCceeccc------------------cCCeEEEEeCCCCCCeEE
Q 010390          327 EI--------CPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH------------------DGEVTAVNWCPNEAGKIV  380 (512)
Q Consensus       327 ~~--------s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h------------------~~~v~~v~~~~~~~~~l~  380 (512)
                      +.        .+++.++++-...+.|+.++.. +..  ..+.+.                  -.....|++.+++..+++
T Consensus       339 ~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~-G~v--~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyV  415 (430)
T 3tc9_A          339 FVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ-GRV--TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFI  415 (430)
T ss_dssp             EEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-SEE--EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEE
T ss_pred             EEccccccccCCCCeEEEEECCCcEEEEECCC-CcE--EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEE
Confidence            44        2446666666666778888742 221  122111                  125788999985325666


Q ss_pred             EEeCCCcEEEEeCC
Q 010390          381 TSSDDYTVRLWSLE  394 (512)
Q Consensus       381 s~~~dg~i~vwd~~  394 (512)
                      +-.....|+..+++
T Consensus       416 aD~~n~rIr~i~~e  429 (430)
T 3tc9_A          416 GDRENRRIRKIGYE  429 (430)
T ss_dssp             EEGGGTEEEEEEEC
T ss_pred             EECCCCeEEEEccC
Confidence            66667788887764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.34  E-value=9.5e-05  Score=73.10  Aligned_cols=279  Identities=8%  Similarity=-0.073  Sum_probs=141.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCC----CEE-EEEeeCC---CCCeEEEEe------CCCcEEEEeCCCCCC
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTG----SIK-SLCSHPT---NSDILVSGS------RDGSFAIWDLRCKSS  185 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~----~v~-~l~~~~~---~~~~l~s~~------~dg~i~vwd~~~~~~  185 (512)
                      +..|+.++.|+.|.-+|..+|+.+........    .+. +.....+   +...++.++      .++.|..+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            55788888999999999999998766543210    111 1111111   111566655      378999999998876


Q ss_pred             CCCccccceeeeccc--------ccccccccc------cccceecccccccEEEEEEeecCCEEEEEeec----------
Q 010390          186 PKSNCAESFVFSSAV--------VKGAHLLSQ------SKRVSRRKAASMSITSVLYLKDEVSIATASAV----------  241 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~--------~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~----------  241 (512)
                      .-.............        ..+......      .+...........-..+++.++...+++..+.          
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            542211100000000        000000000      00000000111112346677776666653321          


Q ss_pred             ---------C----CeEEEEeccCccceecccCCCccccccccccccCeeEEEeC-CCCC---EEEEEecCCeEEEEEcc
Q 010390          242 ---------N----SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD-SNGV---FLTASCMDHRIYLYNVL  304 (512)
Q Consensus       242 ---------d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~  304 (512)
                               |    +.|..+|..+++........+...- .......++. +... .+|+   .++.++.+|.++++|..
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~w-d~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~  354 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAW-DFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS  354 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCS-CCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcc-cccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence                     2    6899999999998876533211000 0001111221 1221 4663   78888999999999976


Q ss_pred             cCCCCceEeeee-------------c-----------------eecee-----------EEEEEECCCCCEEEEec----
Q 010390          305 QLDKGPIQHFSG-------------C-----------------RIESF-----------YVKSEICPNASHILSGS----  339 (512)
Q Consensus       305 ~~~~~~~~~~~~-------------~-----------------~~~~~-----------~~~~~~s~~~~~l~~g~----  339 (512)
                      +++..-...+..             .                 .....           ...++++|+...+++..    
T Consensus       355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~  434 (582)
T 1flg_A          355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK  434 (582)
T ss_dssp             TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred             CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence            543211111100             0                 00000           01246667655554422    


Q ss_pred             -----------------------------CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390          340 -----------------------------SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL  390 (512)
Q Consensus       340 -----------------------------~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v  390 (512)
                                                   .+|.|..||+.+++........  .++..-.....+ .+++.++.||.++.
T Consensus       435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tag-glvf~g~~dg~l~A  511 (582)
T 1flg_A          435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAG-NLVFTGTGDGYFKA  511 (582)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETT-TEEEEECTTSEEEE
T ss_pred             eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--CCCcccceEeCC-CEEEEECCCCcEEE
Confidence                                         2577899999888763222111  122111111134 57888999999999


Q ss_pred             EeCCCCccccccc
Q 010390          391 WSLENSRCSSMRS  403 (512)
Q Consensus       391 wd~~~~~~~~~~~  403 (512)
                      ||.++|+.+-.+.
T Consensus       512 ~D~~tG~~lW~~~  524 (582)
T 1flg_A          512 FDAKSGKELWKFQ  524 (582)
T ss_dssp             EETTTCCEEEEEE
T ss_pred             EECCCCCEEEEec
Confidence            9999999876543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.31  E-value=3.3e-05  Score=76.30  Aligned_cols=73  Identities=8%  Similarity=0.102  Sum_probs=41.7

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC------CCcEEEEeCC
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG------DQTIKIWDAE  138 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------dg~i~iwd~~  138 (512)
                      +..+++++.|+.|..+|..+++..-.......    .........++    .. ++ .++.++.      ++.|..+|..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~----~~~~~~~~~P~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~  184 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDP----KVGSTLTQAPF----VA-KD-TVLMGCSGAELGVRGAVNAFDLK  184 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCG----GGTCBCCSCCE----EE-TT-EEEEECBCGGGTCCCEEEEEETT
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCC----CccceeccCCE----EE-CC-EEEEEecCCccCCCCEEEEEECC
Confidence            55777888899999999988754221100000    00000011121    11 34 4555544      7899999999


Q ss_pred             CCeeeeccc
Q 010390          139 KKKCTGALM  147 (512)
Q Consensus       139 ~~~~~~~~~  147 (512)
                      +|+.+..+.
T Consensus       185 tG~~~W~~~  193 (571)
T 2ad6_A          185 TGELKWRAF  193 (571)
T ss_dssp             TCCEEEEEE
T ss_pred             CCcEEEEEc
Confidence            998876554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.27  E-value=0.00051  Score=65.22  Aligned_cols=244  Identities=7%  Similarity=-0.006  Sum_probs=138.7

Q ss_pred             CcEEEEEEecC--CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---Cc-EEEEeCCC
Q 010390          109 NAIFDLCWIKE--DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GS-FAIWDLRC  182 (512)
Q Consensus       109 ~~V~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~-i~vwd~~~  182 (512)
                      .....|+|.|+  +..|+.+...+.|+.+|..+++...... .......+++++++ +++++....   .. +...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCC-CEEEEcCCCCcccceEEEEECCC
Confidence            34678999984  4456555544889999998877654433 44568999999998 555554321   11 22222211


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~  262 (512)
                      .. ..                      .    ...........+++++++..++++...++.|+.+|..++.......  
T Consensus       217 ~~-~~----------------------~----~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~--  267 (433)
T 4hw6_A          217 GF-TE----------------------R----LSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV--  267 (433)
T ss_dssp             TT-CC----------------------E----EEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE--
T ss_pred             Ce-ec----------------------c----ccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe--
Confidence            10 00                      0    0001123456788888444455545567889999987655411110  


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCC--CceEeeeec-e------------eceeEEEE
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDK--GPIQHFSGC-R------------IESFYVKS  326 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~-~------------~~~~~~~~  326 (512)
                             .......-..++++|+++.|+.+. ..+.|+.++......  .....+.+. .            .-.....+
T Consensus       268 -------~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gi  340 (433)
T 4hw6_A          268 -------MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQG  340 (433)
T ss_dssp             -------ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEE
T ss_pred             -------ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccE
Confidence                   000111234699999999666554 568899988643211  111122111 0            01224568


Q ss_pred             EE---------CCCCCEEEEecCCCCEEEEecCCCCCCCceeccc------------------cCCeEEEEeC-CCCCCe
Q 010390          327 EI---------CPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH------------------DGEVTAVNWC-PNEAGK  378 (512)
Q Consensus       327 ~~---------s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h------------------~~~v~~v~~~-~~~~~~  378 (512)
                      ++         .+++.++++-...+.|+.++.. +..  ..+.+.                  -.....|++. +++ .+
T Consensus       341 av~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-G~v--~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~l  416 (433)
T 4hw6_A          341 IFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-GRV--TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CF  416 (433)
T ss_dssp             EEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-SEE--EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EE
T ss_pred             EEEccccccccCCCCcEEEEECCCCEEEEECCC-CCE--EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EE
Confidence            88         7778877777777889998853 221  122111                  1246788998 555 56


Q ss_pred             EEEEeCCCcEEEEeCC
Q 010390          379 IVTSSDDYTVRLWSLE  394 (512)
Q Consensus       379 l~s~~~dg~i~vwd~~  394 (512)
                      +++=...+.|+..+++
T Consensus       417 yVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          417 YIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEGGGTEEEEEEEC
T ss_pred             EEEeCCCCEEEEEecC
Confidence            6666667788887764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.26  E-value=0.00036  Score=63.23  Aligned_cols=229  Identities=7%  Similarity=-0.092  Sum_probs=139.9

Q ss_pred             CCcEEEEeCCCCe-eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          129 DQTIKIWDAEKKK-CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       129 dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      ...|+..++.... ....+......+.+++|.+.++.++++-...+.|..+++.........                  
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~------------------   73 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV------------------   73 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE------------------
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE------------------
Confidence            4568999987653 111111122356789999876466667667788999988755321100                  


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV  287 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (512)
                              ....-.....+++.+.+..++.+-...+.|.++++........           ..........++++|.+.
T Consensus        74 --------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-----------~~~~~~~P~giavdp~~g  134 (318)
T 3sov_A           74 --------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL-----------FWQELDQPRAIALDPSSG  134 (318)
T ss_dssp             --------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------ECSSCSSEEEEEEEGGGT
T ss_pred             --------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEE-----------EeCCCCCccEEEEeCCCC
Confidence                    0011124667888877777776666678999999875432211           112224467899998766


Q ss_pred             EEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCCCCCCCceeccccC
Q 010390          288 FLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS-GSSDGNAYVWQVNKPQADPIKLKSHDG  364 (512)
Q Consensus       288 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~~~~~~~~~~~h~~  364 (512)
                      .|+.+.  ..+.|...++....   ...+.... -.....+++++++..|+. -...+.|..++++.... .....+...
T Consensus       135 ~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~-l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~  209 (318)
T 3sov_A          135 FMYWTDWGEVPKIERAGMDGSS---RFIIINSE-IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLP  209 (318)
T ss_dssp             EEEEEECSSSCEEEEEETTSCS---CEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCS
T ss_pred             EEEEEecCCCCEEEEEEcCCCC---eEEEEECC-CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCC
Confidence            666655  25788888875322   11221111 123457999997666644 45567899999875432 222333345


Q ss_pred             CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          365 EVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       365 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ...++++..+  .++++-...+.|..++..+|+....
T Consensus       210 ~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~~~~  244 (318)
T 3sov_A          210 HPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE  244 (318)
T ss_dssp             CEEEEEEETT--EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             CceEEEEeCC--EEEEEecCCCeEEEEECCCCCceEE
Confidence            5677887533  5777777788999999987775443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.23  E-value=0.00043  Score=59.80  Aligned_cols=215  Identities=8%  Similarity=0.016  Sum_probs=125.8

Q ss_pred             cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390          145 ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT  224 (512)
Q Consensus       145 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  224 (512)
                      .+.+-...+..++|.|+++.++++...++.|...|.. ++.....                         .+ .......
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-------------------------~l-~g~~D~E   73 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-------------------------PL-DFVKDLE   73 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-------------------------EC-SSCSSEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-------------------------ec-CCCCChH
Confidence            3445556899999999875666667788888888886 3321111                         00 1124678


Q ss_pred             EEEEeecCCEEEEEeecCCeEEEEeccCcccee---cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390          225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI---TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY  301 (512)
Q Consensus       225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  301 (512)
                      .+++.+++.++++ ...++.+.++++.......   ....+.     ...........++++|.++.|+++.......+|
T Consensus        74 GIa~~~~g~~~vs-~E~~~~l~~~~v~~~~~i~~~~~~~~~~-----~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~  147 (255)
T 3qqz_A           74 TIEYIGDNQFVIS-DERDYAIYVISLTPNSEVKILKKIKIPL-----QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVY  147 (255)
T ss_dssp             EEEECSTTEEEEE-ETTTTEEEEEEECTTCCEEEEEEEECCC-----SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEE
T ss_pred             HeEEeCCCEEEEE-ECCCCcEEEEEcCCCCeeeeeeeecccc-----ccccccCCcceEEEeCCCCEEEEEECcCCceEE
Confidence            8888888865554 4457789999877654311   110000     012334568999999999888877766555555


Q ss_pred             EcccCCC-CceEeeee-----ceeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceec-cc------cCCeE
Q 010390          302 NVLQLDK-GPIQHFSG-----CRIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLK-SH------DGEVT  367 (512)
Q Consensus       302 d~~~~~~-~~~~~~~~-----~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-~h------~~~v~  367 (512)
                      .+..... ..+.....     .........++++|. +++++.......+.++|..........+. +.      -..--
T Consensus       148 ~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpE  227 (255)
T 3qqz_A          148 KVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAE  227 (255)
T ss_dssp             EEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEE
T ss_pred             EEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCC
Confidence            5532111 11111111     001112456888886 45556666677888888765422111222 11      12568


Q ss_pred             EEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          368 AVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      .|+|.++| +++++ ++.+.++++.-.
T Consensus       228 Gia~d~~G-~lyIv-sE~n~~y~f~~~  252 (255)
T 3qqz_A          228 GVAMDASG-NIYIV-SEPNRFYRFTPQ  252 (255)
T ss_dssp             EEEECTTC-CEEEE-ETTTEEEEEEC-
T ss_pred             eeEECCCC-CEEEE-cCCceEEEEEec
Confidence            89999999 65555 666666666543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.19  E-value=0.00028  Score=69.77  Aligned_cols=83  Identities=7%  Similarity=0.054  Sum_probs=44.7

Q ss_pred             CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccC-CeEEEEeCC
Q 010390          295 DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDG-EVTAVNWCP  373 (512)
Q Consensus       295 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~-~v~~v~~~~  373 (512)
                      +|.|..||+.+++..-...........     .....+.+++.|+.||.++.||.++++.. ..+....+ .-.-+.|..
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g-----~~~tagglvf~g~~dg~l~A~D~~tG~~l-W~~~~~~g~~a~P~~y~~  538 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAG-----VLATAGNLVFTGTGDGYFKAFDAKSGKEL-WKFQTGSGIVSPPITWEQ  538 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSC-----CEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCccc-----ceEeCCCEEEEECCCCcEEEEECCCCCEE-EEecCCCCcccCceEEEE
Confidence            577888887664322111111110011     11124667888999999999999998874 33332221 112255656


Q ss_pred             CCCCeEEEEe
Q 010390          374 NEAGKIVTSS  383 (512)
Q Consensus       374 ~~~~~l~s~~  383 (512)
                      +|..++++.+
T Consensus       539 ~G~qYv~~~~  548 (582)
T 1flg_A          539 DGEQYLGVTV  548 (582)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEEEc
Confidence            7744555443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.17  E-value=0.0011  Score=57.24  Aligned_cols=219  Identities=9%  Similarity=0.093  Sum_probs=128.0

Q ss_pred             ecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEEecCCCE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~  122 (512)
                      .+.|-.+.+.++++   .|+++ ++|+...++.|...|.. +..             +..+. +-....-.|++.+++.+
T Consensus        21 ~l~g~~~~lSGla~---~~~~~~L~aV~d~~~~I~~ld~~-g~v-------------~~~i~l~g~~D~EGIa~~~~g~~   83 (255)
T 3qqz_A           21 EIAGITNNISSLTW---SAQSNTLFSTINKPAAIVEMTTN-GDL-------------IRTIPLDFVKDLETIEYIGDNQF   83 (255)
T ss_dssp             ECTTCCSCEEEEEE---ETTTTEEEEEEETTEEEEEEETT-CCE-------------EEEEECSSCSSEEEEEECSTTEE
T ss_pred             ECCCcccCcceeEE---eCCCCEEEEEECCCCeEEEEeCC-CCE-------------EEEEecCCCCChHHeEEeCCCEE
Confidence            44555566888888   77665 55667888899999986 322             22221 12256788899888877


Q ss_pred             EEEEeCCCcEEEEeCCCCee---eecc------cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          123 ILTASGDQTIKIWDAEKKKC---TGAL------MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~---~~~~------~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                      +++.-.++.+.++++.....   +...      ...+.....|+|.|.+ +.|+++.......+|.+..  ....... .
T Consensus        84 ~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g--~~~~~~l-~  159 (255)
T 3qqz_A           84 VISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNG--LLSSNEL-H  159 (255)
T ss_dssp             EEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEES--TTCSSCC-E
T ss_pred             EEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEcc--cccCCce-e
Confidence            67665678899988765432   1111      1234567899999988 5555555544556665541  1000000 0


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR  273 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  273 (512)
                      .......              .....-..+.+++++|....+++.+..+..|..+|.... ...........  ..+...
T Consensus       160 i~~~~~~--------------~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~--~~l~~~  222 (255)
T 3qqz_A          160 ISKDKAL--------------QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGS--RGLSHN  222 (255)
T ss_dssp             EEECHHH--------------HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTG--GGCSSC
T ss_pred             eecchhh--------------ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCcc--CCcccc
Confidence            0000000              000112357899999988888777878899999997754 33222111100  001111


Q ss_pred             ccCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 010390          274 LHGISSLSQDSNGVFLTASCMDHRIYLYN  302 (512)
Q Consensus       274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d  302 (512)
                      ......|+++++|++.+ .+..+.++.+.
T Consensus       223 ~~qpEGia~d~~G~lyI-vsE~n~~y~f~  250 (255)
T 3qqz_A          223 IKQAEGVAMDASGNIYI-VSEPNRFYRFT  250 (255)
T ss_dssp             CCSEEEEEECTTCCEEE-EETTTEEEEEE
T ss_pred             cCCCCeeEECCCCCEEE-EcCCceEEEEE
Confidence            23567899999998444 46667666665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.16  E-value=0.0028  Score=64.66  Aligned_cols=207  Identities=8%  Similarity=-0.058  Sum_probs=121.1

Q ss_pred             CCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390          107 HQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR  181 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~  181 (512)
                      ....+..|+|.+....|+ +-...+.|+.+++...    .....+.........|++.+.+.+++++-...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            446788999998555555 5555678999998753    22223332334567888888775677777778899999987


Q ss_pred             CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-CeEEEEeccCccceeccc
Q 010390          182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQA  260 (512)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~  260 (512)
                      ......                           ...........|++.|.+..|+.+-..+ +.|...++........  
T Consensus       502 G~~~~~---------------------------l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l--  552 (791)
T 3m0c_C          502 GVKRKT---------------------------LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--  552 (791)
T ss_dssp             SSSEEE---------------------------EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE--
T ss_pred             CCeEEE---------------------------EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE--
Confidence            432111                           0111223578999999877777654323 6788888875433221  


Q ss_pred             CCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec
Q 010390          261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS  339 (512)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  339 (512)
                               ..........|++++.+..|+.+. ..+.|..+++.......+  ............+++.. +.++++-.
T Consensus       553 ---------v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v--~~~~~~l~~P~glav~~-~~lYwtD~  620 (791)
T 3m0c_C          553 ---------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI--LEDEKRLAHPFSLAVFE-DKVFWTDI  620 (791)
T ss_dssp             ---------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--EECTTTTSSEEEEEEET-TEEEEEET
T ss_pred             ---------EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEE--ecCCCccCCCCEEEEeC-CEEEEEEC
Confidence                     112224578899998777676665 457899999854322221  12111111233455532 23444445


Q ss_pred             CCCCEEEEecCCCCC
Q 010390          340 SDGNAYVWQVNKPQA  354 (512)
Q Consensus       340 ~dg~i~iw~~~~~~~  354 (512)
                      ..+.|...+..+++.
T Consensus       621 ~~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          621 INEAIFSANRLTGSD  635 (791)
T ss_dssp             TTTEEEEEETTTCCC
T ss_pred             CCCEEEEEeCCCCcc
Confidence            556777777666544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.16  E-value=0.0019  Score=60.61  Aligned_cols=238  Identities=9%  Similarity=-0.054  Sum_probs=144.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      .+|+.+. ...|+..++........+. ....+..|+|.+.++.++++-...+.|+.+++.........           
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~-----------  150 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-----------  150 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC-----------
T ss_pred             ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc-----------
Confidence            3455443 4678999987765444443 44578899999877466666666788988888643210000           


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                  .............+++.+.+..|+.+-...+.|.+.+++.......           ..........+
T Consensus       151 ------------~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l-----------~~~~~~~P~~i  207 (400)
T 3p5b_L          151 ------------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-----------FRENGSKPRAI  207 (400)
T ss_dssp             ------------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE-----------EECSSCCEEEE
T ss_pred             ------------eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEE-----------EeCCCCCcceE
Confidence                        0011112235778899887777777666778999998875543221           11122347889


Q ss_pred             EeCCCCCEEEEEec--CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCCCCCCc
Q 010390          281 SQDSNGVFLTASCM--DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQVNKPQADPI  357 (512)
Q Consensus       281 ~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~  357 (512)
                      +++|.+..|+.+..  .+.|...++.....   ..+.... -.....+++++++..|+.+ ...+.|..+|++..... .
T Consensus       208 avdp~~g~ly~td~~~~~~I~~~~~dG~~~---~~~~~~~-l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~  282 (400)
T 3p5b_L          208 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-T  282 (400)
T ss_dssp             EEETTTTEEEEEECSSSCCEEEEETTSCSC---EEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-E
T ss_pred             EEecccCeEEEEeCCCCCEEEEEeCCCCcc---EEEEECC-CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-E
Confidence            99997666665542  37888888754221   1221111 1245679999877766555 44678999998754331 2


Q ss_pred             eecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          358 KLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       358 ~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ....  .-....++++.. + .++++-...+.|..+|..+|+.+..
T Consensus       283 ~~~~~~~l~~P~gl~v~~-~-~lywtd~~~~~V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          283 ILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVNL  326 (400)
T ss_dssp             EEECSSTTSSEEEEEEET-T-EEEEEESSSCSEEEEESSSCCCCEE
T ss_pred             EEeCCCCCCCCEEEEEeC-C-EEEEecCCCCeEEEEEcCCCCceEE
Confidence            2222  223456777733 3 5777777788999999877766554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.15  E-value=0.00014  Score=71.80  Aligned_cols=53  Identities=6%  Similarity=-0.067  Sum_probs=31.7

Q ss_pred             CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe
Q 010390          331 NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~  383 (512)
                      .+.+++.++.|+.++.||.++++.....-.+......-+.+..+|.+++++.+
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence            46677789999999999999988743222222111122445556644555443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.09  E-value=0.00035  Score=71.70  Aligned_cols=200  Identities=8%  Similarity=0.005  Sum_probs=108.9

Q ss_pred             CEEEEEee-CCCCCeEEEEeCCC----cEEEEeCCCC-CCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          152 SIKSLCSH-PTNSDILVSGSRDG----SFAIWDLRCK-SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       152 ~v~~l~~~-~~~~~~l~s~~~dg----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      .+...+|+ |++..+.++...+|    .|+++|+.++ +.....                          +   ......
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--------------------------~---~~~~~~  225 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--------------------------V---SGTNGE  225 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--------------------------E---EEECSC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--------------------------c---cCceee
Confidence            67889999 99843444444443    4999999877 422100                          0   011346


Q ss_pred             EEEeecCCEEEEEeecC----CeEEEEeccCccceecccCCCcccccccc-ccccCeeEEEeCCCCCEEEEEec---CCe
Q 010390          226 VLYLKDEVSIATASAVN----SIVKFWDTRNLKAQITQAWPHAESSSAKE-TRLHGISSLSQDSNGVFLTASCM---DHR  297 (512)
Q Consensus       226 ~~~~~~~~~l~~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~---dg~  297 (512)
                      +.|+||++.|+.+...+    ..|.++++.+.......         ... ........+.|+|||++|+..+.   ...
T Consensus       226 ~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l---------v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  296 (751)
T 2xe4_A          226 IVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVC---------LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAE  296 (751)
T ss_dssp             CEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEE---------EEECCCTTCEEEEEECTTSSEEEEEEECSSCEE
T ss_pred             EEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEE---------EEecCCCceEEEEEECCCCCEEEEEecCCCCce
Confidence            78999999888765322    36888888765422111         011 11123567899999998887653   346


Q ss_pred             EEEEEcccCCCCc-eEeeeeceeceeEEEEEECCCCCEEEEecCC----CCEEEEecCCCCCCCce-eccccC--CeEEE
Q 010390          298 IYLYNVLQLDKGP-IQHFSGCRIESFYVKSEICPNASHILSGSSD----GNAYVWQVNKPQADPIK-LKSHDG--EVTAV  369 (512)
Q Consensus       298 i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d----g~i~iw~~~~~~~~~~~-~~~h~~--~v~~v  369 (512)
                      |+++|+.+..... +..+.... ......+.|+..+.+++....+    ..|..+++.+... ... +..|..  .+..+
T Consensus       297 l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~~~~li~~~~~~~l~~~  374 (751)
T 2xe4_A          297 VHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD-WSHVLVDHSEDVFMESI  374 (751)
T ss_dssp             EEEEESSSCTTCCCEEESSCCC-TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTC-CCCEEECCCSSEEEEEE
T ss_pred             EEEEECCCCCCCceeEEeecCC-CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccc-ceeeEECCCCCcEEEEE
Confidence            8888886542222 02222111 1222233433334444444433    2466667654222 122 333433  45566


Q ss_pred             EeCCCCCCeEEEEeCCCcEE--EEeC
Q 010390          370 NWCPNEAGKIVTSSDDYTVR--LWSL  393 (512)
Q Consensus       370 ~~~~~~~~~l~s~~~dg~i~--vwd~  393 (512)
                      .+.  +..++++...|+..+  ++++
T Consensus       375 ~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          375 AVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEE--CCEEEEEEEeCCEEEEEEEec
Confidence            665  325777777888554  5554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.08  E-value=0.0059  Score=55.54  Aligned_cols=274  Identities=7%  Similarity=-0.009  Sum_probs=139.9

Q ss_pred             cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccccccccee-ccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARIS-DWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      ...+.+|.|   .+++..+|+| .+|.| +...+.++. -         ..+. ........+.+|.|.+ +. ++.++.
T Consensus        35 ~~~~~~v~~---~~~~~~~~~G-~~g~i-~~s~DgG~t-W---------~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~   97 (327)
T 2xbg_A           35 TATILDMSF---IDRHHGWLVG-VNATL-METRDGGQT-W---------EPRTLVLDHSDYRFNSVSFQG-NE-GWIVGE   97 (327)
T ss_dssp             SSCEEEEEE---SSSSCEEEEE-TTTEE-EEESSTTSS-C---------EECCCCCSCCCCEEEEEEEET-TE-EEEEEE
T ss_pred             CCcEEEEEE---CCCCcEEEEc-CCCeE-EEeCCCCCC-C---------eECCCCCCCCCccEEEEEecC-Ce-EEEEEC
Confidence            446788887   7777777755 46655 333333321 0         0010 0112245788999976 43 444556


Q ss_pred             CCcEEEEeCCCCee---eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          129 DQTIKIWDAEKKKC---TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       129 dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      ++.|.. ....++.   +.....+.+.+..+.+.+++ ..++++ .+|.|.. ....++.-.                  
T Consensus        98 ~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~------------------  155 (327)
T 2xbg_A           98 PPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQ------------------  155 (327)
T ss_dssp             TTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEE------------------
T ss_pred             CCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCE------------------
Confidence            675544 2233332   22111233557788877655 555544 4554422 111111100                  


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEE-Eec--cCccceecccCCCccccccccccccCeeEEEe
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKF-WDT--RNLKAQITQAWPHAESSSAKETRLHGISSLSQ  282 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~i-wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  282 (512)
                              .........+..+.+.+++..+++ + .+|.+.. .|-  .+.+..             .......+..+.+
T Consensus       156 --------~~~~~~~~~~~~~~~~~~~~~~~~-g-~~G~~~~S~d~gG~tW~~~-------------~~~~~~~~~~~~~  212 (327)
T 2xbg_A          156 --------ALVQEAIGVMRNLNRSPSGEYVAV-S-SRGSFYSTWEPGQTAWEPH-------------NRTTSRRLHNMGF  212 (327)
T ss_dssp             --------EEECSCCCCEEEEEECTTSCEEEE-E-TTSSEEEEECTTCSSCEEE-------------ECCSSSCEEEEEE
T ss_pred             --------EeecCCCcceEEEEEcCCCcEEEE-E-CCCcEEEEeCCCCCceeEC-------------CCCCCCccceeEE
Confidence                    001122346788899988776654 4 3554443 332  111111             0112245788889


Q ss_pred             CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec--eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390          283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC--RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK  360 (512)
Q Consensus       283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~  360 (512)
                      .+++..++ .+.+|.+++.+...+.  ........  .....+..+++.+++..++++. +|.| ++..+.++. ...+.
T Consensus       213 ~~~g~~~~-~~~~G~~~~s~~D~G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t-W~~~~  286 (327)
T 2xbg_A          213 TPDGRLWM-IVNGGKIAFSDPDNSE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT-WQQDV  286 (327)
T ss_dssp             CTTSCEEE-EETTTEEEEEETTEEE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS-CEECG
T ss_pred             CCCCCEEE-EeCCceEEEecCCCCC--eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc-cEEcC
Confidence            98887654 4467887776421110  00000000  0112356688888887777665 6666 344444432 22222


Q ss_pred             ---cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          361 ---SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       361 ---~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                         .....+.++.|.++  ..++.++.+|.|.-++-
T Consensus       287 ~~~~~~~~~~~v~~~~~--~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          287 DVKKVPSNFYKILFFSP--DQGFILGQKGILLRYVT  320 (327)
T ss_dssp             GGTTSSSCCCEEEEEET--TEEEEECSTTEEEEECC
T ss_pred             ccCCCCCCeEEEEEECC--CceEEEcCCceEEEEcC
Confidence               22456788888754  46778888998776653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.0025  Score=60.77  Aligned_cols=267  Identities=10%  Similarity=0.043  Sum_probs=142.7

Q ss_pred             EEEecC-CCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceecc-ccCCCcEEEEEE-------ecCCCEEEEEe
Q 010390           58 FCKTSK-NSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-VAHQNAIFDLCW-------IKEDTNILTAS  127 (512)
Q Consensus        58 ~~~~s~-~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~-------s~~~~~l~s~~  127 (512)
                      +++++| ++. ++++-...+.|++.|.+++...           .+... .........|+|       ++++++|+.+.
T Consensus       143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-----------~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad  211 (496)
T 3kya_A          143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-----------SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI  211 (496)
T ss_dssp             EEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-----------EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred             EEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-----------EEEccCccccCCCcEEEEeecccccCCCCCEEEEEe
Confidence            344488 344 4444444567899998765321           01111 112346899999       99999777665


Q ss_pred             CCC-------cEEEEeCCC-Ceee-----ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC-------CCCCCC
Q 010390          128 GDQ-------TIKIWDAEK-KKCT-----GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR-------CKSSPK  187 (512)
Q Consensus       128 ~dg-------~i~iwd~~~-~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~-------~~~~~~  187 (512)
                      ..+       .|.+.+... +...     ..+... .....++++|++..++++-..++.|..+|+.       ++..-.
T Consensus       212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             CCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence            543       266665433 2221     122211 2345678899765777777788889999987       443200


Q ss_pred             CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee----cccC--
Q 010390          188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI----TQAW--  261 (512)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~----~~~~--  261 (512)
                      ......        .+     ..... ...........++|+|++..++++-...+.|+.++........    ....  
T Consensus       291 p~~~~~--------~g-----~~~~l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~  356 (496)
T 3kya_A          291 PIVKNN--------PN-----TFKQL-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY  356 (496)
T ss_dssp             CBGGGC--------TT-----TEEEE-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred             cccccc--------cc-----cccee-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence            000000        00     00000 0011123467899999999777766678899997654322110    0000  


Q ss_pred             CCcccc--ccccccccCee-EEEeC-------CCCCEEEEEecCCeEEEEEcccCCCCceEeeeece-------------
Q 010390          262 PHAESS--SAKETRLHGIS-SLSQD-------SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-------------  318 (512)
Q Consensus       262 ~~~~~~--~~~~~~~~~i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------  318 (512)
                      ......  ........... .+...       .++.++++-...++|+.++. .   ..+..+.+..             
T Consensus       357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~---G~v~TiaG~g~~~~~~~~~~~G~  432 (496)
T 3kya_A          357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-E---GIVSTYAGRGASTSLADGNQWGT  432 (496)
T ss_dssp             TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-T---CBEEEEEESCTTHHHHHSCSCCC
T ss_pred             CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-C---CCEEEEecccccccccCcccccc
Confidence            000000  00011112233 44554       45666666667789999984 2   1333333220             


Q ss_pred             ---------eceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCC
Q 010390          319 ---------IESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       319 ---------~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                               .-.....++++++ +.++++=..++.|+.+++.....
T Consensus       433 ~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          433 DDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             CCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred             CCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence                     0123567888886 77777777778899998876543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.0025  Score=60.69  Aligned_cols=263  Identities=10%  Similarity=-0.033  Sum_probs=143.7

Q ss_pred             cEEEEEEec-CCCEEEEE-eCCCcEEEEeCCCCeeeecccC---cCCCEEEEEe-------eCCCCCeEEEEeCCC-c--
Q 010390          110 AIFDLCWIK-EDTNILTA-SGDQTIKIWDAEKKKCTGALMG---HTGSIKSLCS-------HPTNSDILVSGSRDG-S--  174 (512)
Q Consensus       110 ~V~~l~~s~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~-------~~~~~~~l~s~~~dg-~--  174 (512)
                      ....|+|.| +...|+.+ ...+.|++.|+.++.....+..   .......|+|       ++++ ..|+.+...+ .  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC-CEEEEEeCCCCCcc
Confidence            467899998 35555544 4446799999888766544432   1235889999       9988 5444444433 2  


Q ss_pred             ----EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390          175 ----FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDT  250 (512)
Q Consensus       175 ----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~  250 (512)
                          |.+.+............                  ..   .+. .......++.+|++..|+++...++.|..+|+
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~------------------~~---~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSD------------------IQ---LIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSC------------------EE---EEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             cCceEEEEecCCCCceeeccc------------------ce---eec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence                55665332111100000                  00   000 11244577889977777777778889999999


Q ss_pred             c-------Ccccee---cccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCc--eEeeeec
Q 010390          251 R-------NLKAQI---TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGP--IQHFSGC  317 (512)
Q Consensus       251 ~-------~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~--~~~~~~~  317 (512)
                      .       ++....   .......... ...........++|+|+|+.|+.+. ..+.|+.++........  ...+.+.
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l-~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~  355 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQL-FTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG  355 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEE-EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred             ccccccccCceeeccccccccccccee-EecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence            7       333200   0000000000 0011123467899999999655554 56789987753321110  0112111


Q ss_pred             --------------eeceeEE-EEEEC-------CCCCEEEEecCCCCEEEEecCCCCCCCceeccc-------------
Q 010390          318 --------------RIESFYV-KSEIC-------PNASHILSGSSDGNAYVWQVNKPQADPIKLKSH-------------  362 (512)
Q Consensus       318 --------------~~~~~~~-~~~~s-------~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h-------------  362 (512)
                                    ... ... .++..       .++.++++=...+.|+.++. ++.  +.++.+.             
T Consensus       356 ~g~~G~~DG~~~~a~f~-~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~--v~TiaG~g~~~~~~~~~~~G  431 (496)
T 3kya_A          356 YKQSGYRDDVGTEARMN-NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI--VSTYAGRGASTSLADGNQWG  431 (496)
T ss_dssp             TTBCCCBCCBGGGCBCS-SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB--EEEEEESCTTHHHHHSCSCC
T ss_pred             CCCCcccCCcccccccC-CCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC--EEEEecccccccccCccccc
Confidence                          001 122 34443       45677777677788999984 332  1222211             


Q ss_pred             -----------cCCeEEEEeCCC-CCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          363 -----------DGEVTAVNWCPN-EAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       363 -----------~~~v~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                                 -.....|++.++ + .++++=.....|+.++++...+..-
T Consensus       432 ~~dG~~~~~a~f~~P~gIavd~~~g-~lyVaD~~N~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          432 TDDGDLREVARFRDVSGLVYDDVKE-MFYVHDQVGHTIRTISMEQEENVAG  481 (496)
T ss_dssp             CCCEETTTTCCCSSEEEEEEETTTT-EEEEEETTTTEEEEEEECCCC----
T ss_pred             cCCCCchhhhhcCCCcEEEEECCCC-EEEEEeCCCCEEEEEECCCCccccc
Confidence                       124678999986 6 6666666778999999987766553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.05  E-value=0.0047  Score=55.80  Aligned_cols=226  Identities=8%  Similarity=-0.082  Sum_probs=132.7

Q ss_pred             CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeee-cccCcCC
Q 010390           74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTG-ALMGHTG  151 (512)
Q Consensus        74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~-~~~~h~~  151 (512)
                      ...|+..|++.....            ..........+.+++|.+.+..|+ +-...+.|..+++..+.... .+...-.
T Consensus        12 ~~~I~~i~l~~~~~~------------~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~   79 (318)
T 3sov_A           12 RRDLRLVDATNGKEN------------ATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL   79 (318)
T ss_dssp             EEEEEEEETTCTTSC------------CEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS
T ss_pred             cCeEEEEECCCCceE------------EEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC
Confidence            457899998765211            111111224577899998655555 55567889999987663221 2222223


Q ss_pred             CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec
Q 010390          152 SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD  231 (512)
Q Consensus       152 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  231 (512)
                      ....+++.+.+++++++-...+.|.++++.......                           ...........+++.|.
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~---------------------------l~~~~~~~P~giavdp~  132 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV---------------------------LFWQELDQPRAIALDPS  132 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---------------------------EECSSCSSEEEEEEEGG
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE---------------------------EEeCCCCCccEEEEeCC
Confidence            566788887664677776677899999986432111                           00112235688999998


Q ss_pred             CCEEEEEee-cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCC
Q 010390          232 EVSIATASA-VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKG  309 (512)
Q Consensus       232 ~~~l~~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~  309 (512)
                      +..++.+.. ..+.|...++........           ..........+++++++..|+.+. ..+.|..+|+......
T Consensus       133 ~g~ly~td~~~~~~I~r~~~dG~~~~~~-----------~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~  201 (318)
T 3sov_A          133 SGFMYWTDWGEVPKIERAGMDGSSRFII-----------INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ  201 (318)
T ss_dssp             GTEEEEEECSSSCEEEEEETTSCSCEEE-----------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCEEEEEecCCCCEEEEEEcCCCCeEEE-----------EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE
Confidence            777776542 357788888764322111           111123467899999777666654 5688999998542221


Q ss_pred             ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          310 PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                         .+.... ......+++. .+.++++-...+.|..++..+++.
T Consensus       202 ---~~~~~~-~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          202 ---AVVKGS-LPHPFALTLF-EDILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             ---EEECSC-CSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             ---EEecCC-CCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence               111111 1223445654 334555555667888888866654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.90  E-value=0.025  Score=56.37  Aligned_cols=229  Identities=8%  Similarity=-0.108  Sum_probs=137.3

Q ss_pred             EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeeec
Q 010390           67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTGA  145 (512)
Q Consensus        67 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~  145 (512)
                      +|+.+ ....|+..++++...           .....+ ..-..+..|+|++.+..|+ +-..++.|..+++........
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~-----------~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v   74 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNN-----------NVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV   74 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTC-----------EEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCc-----------ceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEE
Confidence            44444 356799999875432           011111 2235688999999666665 555678899999876543333


Q ss_pred             ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390          146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS  225 (512)
Q Consensus       146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  225 (512)
                      +.........|++.+.+++++++-...+.|.+.++.......                           .....-.....
T Consensus        75 ~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~---------------------------l~~~~l~~P~~  127 (628)
T 4a0p_A           75 VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV---------------------------LVWKDLDSPRA  127 (628)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE---------------------------EECSSCCCEEE
T ss_pred             EeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE---------------------------EEeCCCCCccc
Confidence            332224567888887765677776677889999886432110                           00011235689


Q ss_pred             EEEeecCCEEEEEe-ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEc
Q 010390          226 VLYLKDEVSIATAS-AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNV  303 (512)
Q Consensus       226 ~~~~~~~~~l~~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~  303 (512)
                      +++.|....++.+- +..+.|...++........            .........+++++++..|+.+. ..+.|..+|+
T Consensus       128 iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l------------~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          128 LALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL------------VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE------------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE------------ECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            99998766676654 2256787777765433221            11234578899999877776665 5678999998


Q ss_pred             ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390          304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      .....   ..+...  ......+++.. +.++++-...+.|...|..+++
T Consensus       196 dG~~~---~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          196 LGLNR---EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             TSCSC---EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCce---EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            65332   122211  11233566654 4444555556778888865554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.89  E-value=0.007  Score=61.78  Aligned_cols=237  Identities=9%  Similarity=-0.058  Sum_probs=141.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      +|+.+ ....|+..++........+. ....+.+|+|.+.++.++++-...+.|+.+++........             
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~-------------  461 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-------------  461 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------
T ss_pred             ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc-------------
Confidence            44433 34568888887665444343 3456789999986646666666678888888864321000             


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                ..............|++.+.+..|+.+-...+.|.+.++........           ..........|+
T Consensus       462 ----------~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l-----------~~~~l~~P~gIa  520 (791)
T 3m0c_C          462 ----------YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-----------FRENGSKPRAIV  520 (791)
T ss_dssp             ----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-----------EECTTCCEEEEE
T ss_pred             ----------eeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEE-----------EeCCCCCcceEE
Confidence                      00011112235678899888888888777788999999875443221           112223478999


Q ss_pred             eCCCCCEEEEEec--CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCCCCCCce
Q 010390          282 QDSNGVFLTASCM--DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       282 ~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~  358 (512)
                      ++|.+..|+.+..  .+.|.+.++...   ....+.... -.....+++++.+..|+.+ ...+.|..+++..... ...
T Consensus       521 VDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~~lv~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v  595 (791)
T 3m0c_C          521 VDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTI  595 (791)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE
T ss_pred             EecCCCCEEEecCCCCCeEEEEecCCC---ceEEEEeCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEE
Confidence            9997666666543  268888887532   222222211 1345678999776666554 4456799999865443 222


Q ss_pred             ecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          359 LKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       359 ~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ...  .-....+|++..+  .++++-...+.|...|..+|+.+..
T Consensus       596 ~~~~~~l~~P~glav~~~--~lYwtD~~~~~I~~~dk~tG~~~~~  638 (791)
T 3m0c_C          596 LEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL  638 (791)
T ss_dssp             EECTTTTSSEEEEEEETT--EEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             ecCCCccCCCCEEEEeCC--EEEEEECCCCEEEEEeCCCCcceEE
Confidence            222  1234556776432  5666666778888888777765444

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.88  E-value=0.0062  Score=65.02  Aligned_cols=104  Identities=13%  Similarity=0.019  Sum_probs=63.7

Q ss_pred             CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC------CCEEEEEeC-CCcEEEEeC
Q 010390           65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE------DTNILTASG-DQTIKIWDA  137 (512)
Q Consensus        65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~------~~~l~s~~~-dg~i~iwd~  137 (512)
                      +..++.+. .+.+.+++++.+..           ..... ..-...|.|+++.|.      +++++.|.. |++|+|+++
T Consensus       523 ~~~vvva~-g~~l~~fel~~~~L-----------~~~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL  589 (1158)
T 3ei3_A          523 SSQVVVAV-GRALYYLQIHPQEL-----------RQISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL  589 (1158)
T ss_dssp             SSEEEEEE-TTEEEEEEEETTEE-----------EEEEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred             CCEEEEEE-CCEEEEEEeeCCce-----------eeecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence            34555554 56777777764311           11111 122468999999863      478999996 999999999


Q ss_pred             CCCeeeecccC-cCCCEEEEEeeC-CCCCeEEEEeCCCcEEEEeCC
Q 010390          138 EKKKCTGALMG-HTGSIKSLCSHP-TNSDILVSGSRDGSFAIWDLR  181 (512)
Q Consensus       138 ~~~~~~~~~~~-h~~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~  181 (512)
                      .+.+.+....- ......++.+.. .+..+|..|-.||.+..+.+.
T Consensus       590 ~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          590 PSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             TTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             CCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence            87665543221 112344444332 233578889999988776654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.85  E-value=9.7e-05  Score=74.78  Aligned_cols=228  Identities=9%  Similarity=-0.062  Sum_probs=130.2

Q ss_pred             CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC---CCCCccccceeeecccccccc
Q 010390          129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS---SPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      .+.|++.++.+.+....+... ..+..|+|.+.++.++++-...+.|+.+++....   ....                 
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~-----------------  446 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-----------------  446 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC-----------------
T ss_pred             ccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE-----------------
Confidence            456888888776655444433 3566889998764555555566789999887521   0000                 


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                               ...........+++.+.+..|+++-...+.|.++++.........           .........++++|.
T Consensus       447 ---------~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~-----------~~~~~~P~giavDp~  506 (699)
T 1n7d_A          447 ---------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF-----------REQGSKPRAIVVDPV  506 (699)
T ss_dssp             ---------BCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC-----------CCSSCCCCCEECCSS
T ss_pred             ---------EEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE-----------eCCCCCcceEEEccC
Confidence                     000111234567777666666665555788999988754332211           111234578899987


Q ss_pred             CCEEEEEec--CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecCCCCEEEEecCCCCCCCceecc-
Q 010390          286 GVFLTASCM--DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSSDGNAYVWQVNKPQADPIKLKS-  361 (512)
Q Consensus       286 ~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~-  361 (512)
                      +.+|+.+..  .+.|.++++.......   +.... ......++++|++..| ++-...+.|..+++.....  ..+.. 
T Consensus       507 ~g~ly~td~~~~~~I~~~~~dG~~~~~---l~~~~-l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~--~~~~~~  580 (699)
T 1n7d_A          507 HGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILED  580 (699)
T ss_dssp             SSCCEECCCSSSCCEEBCCSSSCCCCE---ESCSS-CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--EEECCC
T ss_pred             CCcEEEcccCCCCeEEEEeCCCCCeeE---EEeCC-CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--EEEEec
Confidence            665555543  2678888764322211   11111 1223458999876555 5555567899999875332  22211 


Q ss_pred             --ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          362 --HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       362 --h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                        .-....+|++..+  .++++....+.|..++..+++.+..+
T Consensus       581 ~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          581 EKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             SSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             CCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEe
Confidence              1123445555443  56777777789999998887766543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.82  E-value=0.00011  Score=74.48  Aligned_cols=204  Identities=8%  Similarity=-0.059  Sum_probs=111.7

Q ss_pred             CcEEEEEEecCCCEEEEE-eCCCcEEEEeCCC----CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          109 NAIFDLCWIKEDTNILTA-SGDQTIKIWDAEK----KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~-~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      ..+..|+|.+.+..|+.+ ...+.|+.+++..    ......+.........|++.+.+++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            456788999877666654 4467899999875    22222222222234567887655466666666788999987643


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-CeEEEEeccCccceecccCC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~~~  262 (512)
                      .....                           ..........+++.|.+..|+.+.... +.|..+++........    
T Consensus       486 ~~~~l---------------------------~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l----  534 (699)
T 1n7d_A          486 KRKTL---------------------------FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----  534 (699)
T ss_dssp             CEEEE---------------------------CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE----
T ss_pred             ceEEE---------------------------EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE----
Confidence            21110                           001112456778888766666544222 6777777654322111    


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD  341 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  341 (512)
                             ..........|++++++..|+.+ ...+.|.++++.......+..  ..........+++..+ .++++....
T Consensus       535 -------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~--~~~~~~~P~glavd~~-~lywtd~~~  604 (699)
T 1n7d_A          535 -------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE--DEKRLAHPFSLAVFED-KVFWTDIIN  604 (699)
T ss_dssp             -------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC--CSSSCSSCCCCEEETT-EEEEECSTT
T ss_pred             -------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe--cCCcCCCceEeEEECC-EEEEEeCCC
Confidence                   11112346789999876655554 456789999985422211111  1000111222444333 444555556


Q ss_pred             CCEEEEecCCCC
Q 010390          342 GNAYVWQVNKPQ  353 (512)
Q Consensus       342 g~i~iw~~~~~~  353 (512)
                      +.|..++..+++
T Consensus       605 ~~V~~~d~~~G~  616 (699)
T 1n7d_A          605 EAIFSANRLTGS  616 (699)
T ss_dssp             TCEEEEETTTEE
T ss_pred             CeEEEEEccCCC
Confidence            778888865544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.82  E-value=0.018  Score=57.29  Aligned_cols=232  Identities=7%  Similarity=-0.118  Sum_probs=145.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      +|+.+ ..+.|+..++.+......+. ..-..+.+|+|.+.++.++++-..++.|..+++.......             
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------   73 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------   73 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------
Confidence            44444 45678999987654332222 1234688999999775666676778899988886532111             


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                    ...........+++...+..|+.+-...+.|.+.++........           ..........+
T Consensus        74 --------------v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l-----------~~~~l~~P~~i  128 (628)
T 4a0p_A           74 --------------VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL-----------VWKDLDSPRAL  128 (628)
T ss_dssp             --------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE-----------ECSSCCCEEEE
T ss_pred             --------------EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE-----------EeCCCCCcccE
Confidence                          00011134678888887777877776778999999875432211           11222446899


Q ss_pred             EeCCCCCEEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCCCCCCc
Q 010390          281 SQDSNGVFLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQVNKPQADPI  357 (512)
Q Consensus       281 ~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~  357 (512)
                      +++|....|+.+.  ..+.|...++.......+  ..   .-.....++++++++.|+.+ ...+.|..+++.....  .
T Consensus       129 avdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l--~~---~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~  201 (628)
T 4a0p_A          129 ALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL--VP---NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--E  201 (628)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCSCEEE--EC---SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--E
T ss_pred             EEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE--EC---CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--E
Confidence            9998655666554  256888888754322211  11   12345678999976666544 4567899999876443  2


Q ss_pred             eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      .+...-....++++.. + .++++-...+.|...|..+++....
T Consensus       202 v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          202 VIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             EEEECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EeeccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCCceEE
Confidence            3333344566788765 3 5667766788999999877765443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.78  E-value=0.038  Score=54.91  Aligned_cols=298  Identities=5%  Similarity=-0.100  Sum_probs=157.0

Q ss_pred             CCcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-
Q 010390           51 TPPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-  128 (512)
Q Consensus        51 ~~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-  128 (512)
                      ..+.+|++   .+. +++.++-...+.|.+.+.+....             .......-.....|++.|.+.+|+.+.. 
T Consensus        84 ~~P~GlAv---D~~~~~ly~~d~~~~~I~v~~~dG~~~-------------~~l~~~~l~~P~~Iavdp~~g~ly~tD~g  147 (619)
T 3s94_A           84 LSPDGLAC---DWLGEKLYWTDSETNRIEVSNLDGSLR-------------KVLFWQELDQPRAIALDPSSGFMYWTDWG  147 (619)
T ss_dssp             SCEEEEEE---ETTTTEEEEEETTTTEEEEEETTSCSC-------------EEEECSSCSCCCCEEEETTTTEEEEEECS
T ss_pred             CCcCeEEE---EecCCEEEEEeCCCCEEEEEECCCCCE-------------EEEEeCCCCCCceEEEecCCCeEEEeccC
Confidence            35677887   764 44555556778999999876532             0111123345678999997666654443 


Q ss_pred             -CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          129 -DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       129 -dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                       .+.|...++............-...+.|++.+++..++++-...+.|...|+..........                 
T Consensus       148 ~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-----------------  210 (619)
T 3s94_A          148 EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-----------------  210 (619)
T ss_dssp             SSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------------------
T ss_pred             CCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-----------------
Confidence             45677677654332222222345678999999775666666667788888886432211100                 


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc------------cc--cccccc
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE------------SS--SAKETR  273 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~--~~~~~~  273 (512)
                                ........+++..+  .++.+...++.|...|..+++...........            +.  ..-...
T Consensus       211 ----------~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~  278 (619)
T 3s94_A          211 ----------GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGID  278 (619)
T ss_dssp             ---------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTT
T ss_pred             ----------CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCC
Confidence                      00112234555433  56655556677888887665433221110000            00  000000


Q ss_pred             ccC-------------eeEEE-----eCCC--------CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEE
Q 010390          274 LHG-------------ISSLS-----QDSN--------GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE  327 (512)
Q Consensus       274 ~~~-------------i~~~~-----~~~~--------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  327 (512)
                      .+.             ..|.+     +.+|        ..+|+.+ ..+.|+..++........ .+.... -.....++
T Consensus       279 ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~-~~~~~~-l~~~~~ld  355 (619)
T 3s94_A          279 NGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDI-VLQLED-IRHAIAID  355 (619)
T ss_dssp             GGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCE-ECCCSC-CSSEEEEE
T ss_pred             CCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCcccee-EEeccc-cCccEEEE
Confidence            001             11111     1111        1233333 345677777654332211 111111 12356789


Q ss_pred             ECCCCCEE-EEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          328 ICPNASHI-LSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       328 ~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      |++.+..| ++-...+.|+.+++..... .......-.....+++...+.+++++-+..+.|.+.++....
T Consensus       356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~  425 (619)
T 3s94_A          356 YDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM  425 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             EEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence            98865555 4545577899998876433 122322234677888886553566676677899999987653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.71  E-value=0.013  Score=52.29  Aligned_cols=172  Identities=10%  Similarity=0.082  Sum_probs=103.1

Q ss_pred             EEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeeee-cccC----cC--CCEEEEEe---eCCCCCeEEEEe---------
Q 010390          111 IFDLCWIKEDTNILTAS-GDQTIKIWDAEKKKCTG-ALMG----HT--GSIKSLCS---HPTNSDILVSGS---------  170 (512)
Q Consensus       111 V~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~-~~~~----h~--~~v~~l~~---~~~~~~~l~s~~---------  170 (512)
                      -.+++|.+....|..++ ..++|..||...+.... .+.+    ..  ..+..|.|   .|++ .++++..         
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTTCTTS
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccccccc
Confidence            34678988555665555 78999999987653322 3332    11  13578999   5775 6666543         


Q ss_pred             ----CCCcEEEEeCC---CCCCCCCccccceeeecccccccccccccccceeccc-ccccEEEEEEeecCCEEEEEeecC
Q 010390          171 ----RDGSFAIWDLR---CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA-ASMSITSVLYLKDEVSIATASAVN  242 (512)
Q Consensus       171 ----~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~g~~d  242 (512)
                          .+..|..+|+.   +++..........               ........+ .......++..++|+..++ ++..
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~---------------~~~~~~~~g~~~~~~nDvavD~~GnaYVt-~s~~  157 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKV---------------QDEFEKKAGKRPFGVVQSAQDRDGNSYVA-FALG  157 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHH---------------HHHHHHHHSSCCEEEEEEEECTTSCEEEE-EEES
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccc---------------cccccccccccccCCceeEECCCCCEEEe-CCCC
Confidence                25779999988   5544321110000               000000000 1135889999999988886 4456


Q ss_pred             -CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          243 -SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       243 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                       +.|..++............ .     .........+.|+++|+|..|++....|.|..+|+..
T Consensus       158 ~~~I~rV~pdG~~~~~~~~~-~-----~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          158 MPAIARVSADGKTVSTFAWE-S-----GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SCEEEEECTTSCCEEEEEEC-C-----CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCeEEEEeCCCCEEeeeeec-C-----CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence             7777777665422211000 0     0111234578999999999999887799999999874

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.71  E-value=0.0066  Score=54.60  Aligned_cols=202  Identities=9%  Similarity=0.074  Sum_probs=112.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCC---CC---eEEEEeC---CCcEEEEeCCCCCC-CCC
Q 010390          119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN---SD---ILVSGSR---DGSFAIWDLRCKSS-PKS  188 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~---~l~s~~~---dg~i~vwd~~~~~~-~~~  188 (512)
                      ...+++.....+-+.+||+ +|+.++.+..  +.++.+..-|.-   +.   ++++...   +++|++|++..... +..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3455666667788999999 8888888764  567777776621   01   2333333   57899997742211 110


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEE--eec-CCEEEEEeecCCeEEEEeccC---ccceecccCC
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY--LKD-EVSIATASAVNSIVKFWDTRN---LKAQITQAWP  262 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~~l~~~g~~dg~i~iwd~~~---~~~~~~~~~~  262 (512)
                      ...                    ...........+..+++  ++. +...+.....+|.+..|++..   +....+..  
T Consensus       116 i~~--------------------~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lV--  173 (355)
T 3amr_A          116 MTD--------------------PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKV--  173 (355)
T ss_dssp             CSC--------------------TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEE--
T ss_pred             ccc--------------------cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEE--
Confidence            000                    00000001145666777  553 444344455789999999843   21111100  


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC---CCceEeeeeceeceeEEEEEE--CCCCC-EEE
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD---KGPIQHFSGCRIESFYVKSEI--CPNAS-HIL  336 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~--s~~~~-~l~  336 (512)
                            ........+..+..++....|+.+-.+.-|..++.....   ...+...........+-.+++  .++++ +|+
T Consensus       174 ------R~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi  247 (355)
T 3amr_A          174 ------RAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM  247 (355)
T ss_dssp             ------EEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred             ------EEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence                  111122468889999988899999998777777754322   112222222212223444555  55655 555


Q ss_pred             Eec-CCCCEEEEecCC
Q 010390          337 SGS-SDGNAYVWQVNK  351 (512)
Q Consensus       337 ~g~-~dg~i~iw~~~~  351 (512)
                      +.+ .+++..+||...
T Consensus       248 vSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          248 ASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEEGGGTEEEEEESST
T ss_pred             EEcCCCCEEEEEECCC
Confidence            544 567899999863

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.68  E-value=0.0024  Score=56.88  Aligned_cols=171  Identities=7%  Similarity=0.052  Sum_probs=107.3

Q ss_pred             cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe---CCCCCEEEEEec--
Q 010390          220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ---DSNGVFLTASCM--  294 (512)
Q Consensus       220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~l~~~~~--  294 (512)
                      .....++.|++....+.++.-..+.|..||...+..... ..+...   ........+..|.+   +++++++++...  
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s---~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS---SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC---CSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc---ccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            345678899987777777666799999999975543322 111100   00011123578999   688877776442  


Q ss_pred             -----------CCeEEEEEcc---cCCCCceEeeeecee---------ceeEEEEEECCCCCEEEEecCC-CCEEEEecC
Q 010390          295 -----------DHRIYLYNVL---QLDKGPIQHFSGCRI---------ESFYVKSEICPNASHILSGSSD-GNAYVWQVN  350 (512)
Q Consensus       295 -----------dg~i~i~d~~---~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~l~~g~~d-g~i~iw~~~  350 (512)
                                 +..|..||+.   +.+......+.....         ......++..++|+..++++.. +.|...+..
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                       6789999987   433332222222111         1246789999999999988877 776666655


Q ss_pred             CCCCCCcee----ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          351 KPQADPIKL----KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       351 ~~~~~~~~~----~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      ........+    .......+.|+++|++ ++|+....+|.|..+|+..
T Consensus       168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          168 GKTVSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SCCEEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred             CCEEeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence            432110111    1112246799999999 7777776699999999884

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.66  E-value=0.016  Score=53.26  Aligned_cols=246  Identities=10%  Similarity=0.084  Sum_probs=120.4

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee--eecc---cCcCCCEEEEEeeCC---CCCeEEEEeCC-----CcE
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC--TGAL---MGHTGSIKSLCSHPT---NSDILVSGSRD-----GSF  175 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~---~~h~~~v~~l~~~~~---~~~~l~s~~~d-----g~i  175 (512)
                      ..-..++|.|+|+++++ ..+|.|++++  +++.  +..+   .........|+|+|+   +..++++-..+     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45679999999985554 5679999998  4432  2211   122356889999997   43445544432     567


Q ss_pred             EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec------------CC
Q 010390          176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV------------NS  243 (512)
Q Consensus       176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~------------dg  243 (512)
                      ..++......    .....+..              ..............++|.|++..+++.|..            .|
T Consensus       108 ~r~~~~~~~~----~~~~~l~~--------------~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g  169 (352)
T 2ism_A          108 VRLRHLGERG----VLDRVVLD--------------GIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGG  169 (352)
T ss_dssp             EEEEECSSCE----EEEEEEEE--------------EECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSS
T ss_pred             EEEEeCCCCc----CceEEEEE--------------eCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCce
Confidence            7777653210    00000000              000000111123589999999766665421            14


Q ss_pred             eEEEEeccCccceecccCCC-c-cccccccccccCeeEEEeCC-CCCEEEEEecCCe--------EEEEEcccCC-----
Q 010390          244 IVKFWDTRNLKAQITQAWPH-A-ESSSAKETRLHGISSLSQDS-NGVFLTASCMDHR--------IYLYNVLQLD-----  307 (512)
Q Consensus       244 ~i~iwd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~i~d~~~~~-----  307 (512)
                      .|.-++... .......... . ...............++|+| ++.++++-...+.        |.+..  ...     
T Consensus       170 ~I~ri~~dG-~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp  246 (352)
T 2ism_A          170 KILRLTPEG-EPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWP  246 (352)
T ss_dssp             EEEEECTTS-SBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTT
T ss_pred             EEEEEcCCC-CCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCC
Confidence            555555542 1100000000 0 00001111112367789999 5665544333332        33332  111     


Q ss_pred             -----------CCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC-----CceeccccCCeEEEEe
Q 010390          308 -----------KGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD-----PIKLKSHDGEVTAVNW  371 (512)
Q Consensus       308 -----------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~-----~~~~~~h~~~v~~v~~  371 (512)
                                 ..+...+..   ......++| .+|.++++.-..+.|...++......     ...+..-...+..+++
T Consensus       247 ~~~g~~~~~~~~~p~~~~~~---~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~  322 (352)
T 2ism_A          247 RVVGRGNDPRYRDPLYFWPQ---GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQV  322 (352)
T ss_dssp             TCCSCCCCTTSCCCSEECTT---CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEE
T ss_pred             cccCCCCCCCCcCCeEecCC---CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEE
Confidence                       011222211   112345666 46777776666777888777644310     1111122357899999


Q ss_pred             CCCCCCeEEEEe
Q 010390          372 CPNEAGKIVTSS  383 (512)
Q Consensus       372 ~~~~~~~l~s~~  383 (512)
                      .||| .++++..
T Consensus       323 ~pdG-~lyv~~~  333 (352)
T 2ism_A          323 GPDG-ALYVTTS  333 (352)
T ss_dssp             CTTS-CEEEEEC
T ss_pred             CCCC-cEEEEEe
Confidence            9999 5655543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.64  E-value=0.033  Score=50.74  Aligned_cols=203  Identities=12%  Similarity=0.151  Sum_probs=112.7

Q ss_pred             cCCcceEEEEEecCCCcEEEEe------------eCCCcEEEEECCCCCCccccccccccccceec--cccCCCcEEEEE
Q 010390           50 ETPPLAVSFCKTSKNSHIFAVS------------DEDGYVSLFDSRRKLPSFACHRENAEKARISD--WVAHQNAIFDLC  115 (512)
Q Consensus        50 ~~~v~~v~~~~~s~~~~~latg------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~l~  115 (512)
                      ......|..   .|+|..+.++            ..+|.|.++|.++......       .-.+..  +....-....+.
T Consensus        49 ~~G~EDi~~---~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-------~l~~~g~~~~~~~f~PhGi~  118 (355)
T 3sre_A           49 DNGSEDLEI---LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-------ELEIIGNTLDISSFNPHGIS  118 (355)
T ss_dssp             CSCCCEEEE---CTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-------ECEEECSSCCGGGCCEEEEE
T ss_pred             CCCcceeEE---cCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-------EEEccCCCCCcCceeeeeeE
Confidence            344667776   7887655554            2699999999874322110       000111  122334677888


Q ss_pred             Eec--CCC-EEEEEe-C--CCcEEEEeCCCC--e--eeecccCc-CCCEEEEEeeCCCCCeEEEEeC---C---------
Q 010390          116 WIK--EDT-NILTAS-G--DQTIKIWDAEKK--K--CTGALMGH-TGSIKSLCSHPTNSDILVSGSR---D---------  172 (512)
Q Consensus       116 ~s~--~~~-~l~s~~-~--dg~i~iwd~~~~--~--~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~---d---------  172 (512)
                      +.+  ++. +|+.+. .  +.+|.+|++..+  .  .+..+.+. -...+.+.+.+++ .++++...   |         
T Consensus       119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~  197 (355)
T 3sre_A          119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMH  197 (355)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHH
T ss_pred             EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhh
Confidence            776  353 344442 2  467888776543  1  23333332 2357889999887 65555431   1         


Q ss_pred             -----CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEE
Q 010390          173 -----GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKF  247 (512)
Q Consensus       173 -----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~i  247 (512)
                           |.|..+|.  ++                            .......-...+.++|+||++.++++-+..+.|..
T Consensus       198 ~~~~~g~vyr~d~--~~----------------------------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~  247 (355)
T 3sre_A          198 LGLAWSFVTYYSP--ND----------------------------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHV  247 (355)
T ss_dssp             TTCCCEEEEEECT--TC----------------------------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             ccCCccEEEEEEC--Ce----------------------------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEE
Confidence                 22333332  11                            01111222357899999999999988878899999


Q ss_pred             EeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecC-CeEEEEE
Q 010390          248 WDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMD-HRIYLYN  302 (512)
Q Consensus       248 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-g~i~i~d  302 (512)
                      |++..........        .. ........+++++ +|++.+++..+ +.|..|+
T Consensus       248 ~~~~~~g~l~~~~--------~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          248 YEKHANWTLTPLR--------VL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             EEECTTSCEEEEE--------EE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred             EEECCCCcEecCE--------EE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence            9987422111100        11 1134567889998 58877766533 3444444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.63  E-value=0.015  Score=57.77  Aligned_cols=230  Identities=7%  Similarity=-0.074  Sum_probs=132.7

Q ss_pred             CCCcEEEEeCCCCe-eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          128 GDQTIKIWDAEKKK-CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       128 ~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      ....|+..++.... ....+...-..+.+++|++.++.++++-...+.|..+++........                  
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------   77 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------   77 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------
Confidence            35668888887653 22222223446789999997745566655567888888864321100                  


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG  286 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  286 (512)
                              .....-.....+++.+.+..++.+....+.|.+.++........           ..........|+++|.+
T Consensus        78 --------v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l-----------~~~~l~~P~~Iavdp~~  138 (619)
T 3s94_A           78 --------VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL-----------FWQELDQPRAIALDPSS  138 (619)
T ss_dssp             --------EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------ECSSCSCCCCEEEETTT
T ss_pred             --------EEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEE-----------EeCCCCCCceEEEecCC
Confidence                    01111236788999998888887777789999999886543221           11223447789999976


Q ss_pred             CEEEEEec--CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE-EecCCCCEEEEecCCCCCCCceecccc
Q 010390          287 VFLTASCM--DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL-SGSSDGNAYVWQVNKPQADPIKLKSHD  363 (512)
Q Consensus       287 ~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~dg~i~iw~~~~~~~~~~~~~~h~  363 (512)
                      ..|+.+..  .+.|...++.....   ..+.... -.....++++++++.|+ +-...+.|..+++...... ....+.-
T Consensus       139 g~ly~tD~g~~~~I~r~~~dG~~~---~~l~~~~-~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~~  213 (619)
T 3s94_A          139 GFMYWTDWGEVPKIERAGMDGSSR---FIIINSE-IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSL  213 (619)
T ss_dssp             TEEEEEECSSSCEEEEEETTSCSC---EEEECSS-CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------
T ss_pred             CeEEEeccCCCCEEEEEECCCCce---EEEEeCC-CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE-EEEeCCC
Confidence            66665543  46777777643221   2221111 12356689998766554 4455678999998764432 1222122


Q ss_pred             CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ....+|++..+  .++++-...+.|...|..+++....
T Consensus       214 ~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          214 PHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             --CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             CCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEE
Confidence            23346677654  4666666778899999888865443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.58  E-value=0.019  Score=51.67  Aligned_cols=194  Identities=9%  Similarity=0.131  Sum_probs=111.9

Q ss_pred             CCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC----CCE--EE--EEeC--CCcE
Q 010390           63 KNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE----DTN--IL--TASG--DQTI  132 (512)
Q Consensus        63 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~----~~~--l~--s~~~--dg~i  132 (512)
                      |...+++....++-+.+||++..              .+..+..  +.++.+..-|+    ++.  |+  +.-.  +++|
T Consensus        38 p~~s~ii~t~k~~gL~Vydl~G~--------------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l  101 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSLDGK--------------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTI  101 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEETTSC--------------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEE
T ss_pred             CCccEEEEEcCCCCEEEEcCCCc--------------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeE
Confidence            34456666677889999999543              2444432  56777777662    222  33  3333  5789


Q ss_pred             EEEeC--CCCeeeecccC------cC-CCEEEEEe--eCCCC-CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          133 KIWDA--EKKKCTGALMG------HT-GSIKSLCS--HPTNS-DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       133 ~iwd~--~~~~~~~~~~~------h~-~~v~~l~~--~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      .+|++  .+++ +..+..      .. ..+..+++  +|..+ .+++....+|.+..|++.....-..            
T Consensus       102 ~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~------------  168 (355)
T 3amr_A          102 EIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI------------  168 (355)
T ss_dssp             EEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE------------
T ss_pred             EEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc------------
Confidence            99966  3443 333311      11 45667777  66443 3688888899999999853211100            


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc-----cceecccCCCcccccccccccc
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL-----KAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                              ..+.++.+ .....+..+...+....|++ +.++..|..++.+-.     +.+...         .......
T Consensus       169 --------~~~lVR~f-~lgsq~EgcvvDd~~g~Lyv-~eEd~GIw~~da~p~~~~~~~~v~~~---------~~g~l~a  229 (355)
T 3amr_A          169 --------SGKKVRAF-KMNSQTEGMAADDEYGRLYI-AEEDEAIWKFSAEPDGGSNGTVIDRA---------DGRHLTR  229 (355)
T ss_dssp             --------EEEEEEEE-ECSSCEEEEEEETTTTEEEE-EETTTEEEEEECSTTSCSCCEEEEEB---------SSSSBCS
T ss_pred             --------cceEEEEe-cCCCCcceEEEcCCCCeEEE-ecccceEEEEeCCcCCCCCceEEEEe---------cCCcccc
Confidence                    01111122 22347888888888888887 546766666665421     222111         0111123


Q ss_pred             CeeEEEe--CCCCC-EEEEEe-cCCeEEEEEcc
Q 010390          276 GISSLSQ--DSNGV-FLTASC-MDHRIYLYNVL  304 (512)
Q Consensus       276 ~i~~~~~--~~~~~-~l~~~~-~dg~i~i~d~~  304 (512)
                      .+..|++  .++++ +|++++ .+++..+||..
T Consensus       230 DvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          230 DIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             CEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            5777777  45555 666666 66799999974

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.56  E-value=0.049  Score=50.20  Aligned_cols=278  Identities=11%  Similarity=0.081  Sum_probs=167.9

Q ss_pred             cEEEEe---eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390           66 HIFAVS---DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC  142 (512)
Q Consensus        66 ~~latg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  142 (512)
                      +|+.+-   +.+..|.|.|+.++...            .+.-..-.    +.-.+|..+.||.-. ..++.|+|+++.+.
T Consensus        36 kyicVrE~~~~~~~vvIiDl~~~~~~------------~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~k   98 (494)
T 1bpo_A           36 KFICIREKVGEQAQVVIIDMNDPSNP------------IRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSK   98 (494)
T ss_dssp             TEEEEEECCTTCCEEEEEETTSTTSC------------EEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEE
T ss_pred             ceEEEEecCCCCCeEEEEECCCCCcc------------eecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhh
Confidence            455553   33447999998775321            11111111    234577777777554 67899999999988


Q ss_pred             eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390          143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS  222 (512)
Q Consensus       143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (512)
                      +..+.-.. .|.-=.|-..  +.|+-.+. ..|.-|++.........      +              .+...+  ....
T Consensus        99 lks~~~~e-~VvfWkWis~--~~l~lVT~-taVyHWsi~~~s~P~kv------F--------------dR~~~L--~~~Q  152 (494)
T 1bpo_A           99 MKAHTMTD-DVTFWKWISL--NTVALVTD-NAVYHWSMEGESQPVKM------F--------------DRHSSL--AGCQ  152 (494)
T ss_dssp             EEEEECSS-CCCEEEEEET--TEEEEECS-SEEEEEESSSSCCCEEE------E--------------ECCGGG--TTCE
T ss_pred             hcceecCC-CceEEEecCC--CeEEEEcC-CeeEEecccCCCCchhh------e--------------ecchhc--ccce
Confidence            88776443 5555566643  45665554 58999999753222110      0              000011  1345


Q ss_pred             EEEEEEeecCCEEEEEee------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC---CEEEEEe
Q 010390          223 ITSVLYLKDEVSIATASA------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG---VFLTASC  293 (512)
Q Consensus       223 v~~~~~~~~~~~l~~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~  293 (512)
                      |..-..+++.++++.+|-      -.|.+.+|..+.....            ..++|......+.+..+.   .+++.+.
T Consensus       153 IInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ------------~ieGhaa~F~~~~~~g~~~~~~lf~fa~  220 (494)
T 1bpo_A          153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ------------PIEGHAASFAQFKMEGNAEESTLFCFAV  220 (494)
T ss_dssp             EEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE------------EECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred             EEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc------------hheeeeeeeEEEecCCCCCCceEEEEEE
Confidence            666677888888877663      2467888888765543            355555555444444321   2333343


Q ss_pred             c---CCeEEEEEcccC-CCCceE-------eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390          294 M---DHRIYLYNVLQL-DKGPIQ-------HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH  362 (512)
Q Consensus       294 ~---dg~i~i~d~~~~-~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h  362 (512)
                      .   .+.+++.++... ...+..       .+.......+...+..++....+..-+.-|.|++||+.++.+. ..-+-.
T Consensus       221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i-~~nrIs  299 (494)
T 1bpo_A          221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRIS  299 (494)
T ss_dssp             CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE-EEEECC
T ss_pred             ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee-eeeccc
Confidence            3   278999998543 111111       1122233567778999999999999999999999999998773 333444


Q ss_pred             cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          363 DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      ...|..-+-.... .=++.....|.|.--.++....+.
T Consensus       300 ~~~iF~t~~~~~~-~Gi~~Vnr~GqVl~v~v~e~~ivp  336 (494)
T 1bpo_A          300 GETIFVTAPHEAT-AGIIGVNRKGQVLSVCVEEENIIP  336 (494)
T ss_dssp             SSCEEEEEEETTT-TEEEEEETTCEEEEEEECTTTHHH
T ss_pred             CCceEEecccCCC-CcEEEEccCceEEEEEEccccchh
Confidence            5566555555444 345556678877777777666543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.47  E-value=0.053  Score=49.71  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=60.0

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC---CCEEEEEeC
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE---DTNILTASG  128 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~---~~~l~s~~~  128 (512)
                      .+.+|+|   .|||+++++ ..+|.|++++ . +...        ....+..+.........|+|+|+   +..|..+..
T Consensus        32 ~P~~ia~---~pdG~l~V~-e~~g~I~~i~-~-g~~~--------~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~   97 (352)
T 2ism_A           32 VPWALAF---LPDGGMLIA-ERPGRIRLFR-E-GRLS--------TYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRT   97 (352)
T ss_dssp             CEEEEEE---CTTSCEEEE-ETTTEEEEEE-T-TEEE--------EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             CceEEEE---cCCCeEEEE-eCCCeEEEEE-C-CCcc--------EeecceEeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence            4568888   999985555 5679999998 2 2110        00001112223467899999998   555554433


Q ss_pred             -C-----CcEEEEeCCCCe-----e-eeccc---CcCCCEEEEEeeCCCCCeEEEEe
Q 010390          129 -D-----QTIKIWDAEKKK-----C-TGALM---GHTGSIKSLCSHPTNSDILVSGS  170 (512)
Q Consensus       129 -d-----g~i~iwd~~~~~-----~-~~~~~---~h~~~v~~l~~~~~~~~~l~s~~  170 (512)
                       .     +.|..++...+.     . +..+.   ........++|.|++ .++++.+
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G  153 (352)
T 2ism_A           98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTG  153 (352)
T ss_dssp             ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECC
T ss_pred             cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEEC
Confidence             2     568888876431     1 11122   111123578999988 6666644

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.47  E-value=0.17  Score=54.17  Aligned_cols=99  Identities=11%  Similarity=0.146  Sum_probs=55.5

Q ss_pred             CCEEEEEe----------cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC
Q 010390          286 GVFLTASC----------MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD  355 (512)
Q Consensus       286 ~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~  355 (512)
                      ..++++|.          ..|.|.+|++..   ..+..+........+.+++-- +|+ |++|- ...|++|++...+..
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~---~kL~lv~~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L  917 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSD---GKLQTVAEKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEKEL  917 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEET---TEEEEEEEEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTSCE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEEC---CEEEEEEEEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCceE
Confidence            46888876          348899999863   234444444555666665532 344 44443 467999999765432


Q ss_pred             CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      ..... +-..|..+.....+ ++++.|..-..|.+..
T Consensus       918 ~~~~~-~~~~i~~~~l~~~~-~~I~vgD~~~Sv~~~~  952 (1158)
T 3ei3_A          918 RTECN-HYNNIMALYLKTKG-DFILVGDLMRSVLLLA  952 (1158)
T ss_dssp             EEEEE-ECCCSCEEEEEEET-TEEEEEESSBCEEEEE
T ss_pred             EEEee-ccccEEEEEEeccC-CEEEEEEhhheEEEEE
Confidence            11111 11123222222235 6888888666666644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.28  E-value=0.1  Score=48.09  Aligned_cols=226  Identities=14%  Similarity=0.158  Sum_probs=134.5

Q ss_pred             CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      .+..|.|.|+.++..+..-.-   .--+.-.+|.. +.++.-. ..++.++|+++...+....                 
T Consensus        46 ~~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~-~iiALra-g~~lQiFnle~K~klks~~-----------------  103 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHT-----------------  103 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEEC---CCSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEE-----------------
T ss_pred             CCCeEEEEECCCCCcceeccc---ccceeeeCCCC-cEEEEec-CCeEEEEchHHhhhhccee-----------------
Confidence            345799999988654422111   11234467866 6666554 6799999998765443221                 


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV  287 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (512)
                                 ....|.--.|..+...-++   .+..|+-|++.....+......+.    .+  ....|..-..+++.+
T Consensus       104 -----------~~e~VvfWkWis~~~l~lV---T~taVyHWsi~~~s~P~kvFdR~~----~L--~~~QIInY~~d~~~k  163 (494)
T 1bpo_A          104 -----------MTDDVTFWKWISLNTVALV---TDNAVYHWSMEGESQPVKMFDRHS----SL--AGCQIINYRTDAKQK  163 (494)
T ss_dssp             -----------CSSCCCEEEEEETTEEEEE---CSSEEEEEESSSSCCCEEEEECCG----GG--TTCEEEEEEECTTSS
T ss_pred             -----------cCCCceEEEecCCCeEEEE---cCCeeEEecccCCCCchhheecch----hc--ccceEEEEEECCCCC
Confidence                       1234555667665554444   378899999976444433322222    11  235688888899999


Q ss_pred             EEEEEec-------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC---CCEEEEecC---CCCEEEEecCCCC-
Q 010390          288 FLTASCM-------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN---ASHILSGSS---DGNAYVWQVNKPQ-  353 (512)
Q Consensus       288 ~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~g~~---dg~i~iw~~~~~~-  353 (512)
                      +++..+-       .|.+.+|....   .....+.+|...  ...+....+   ...++.+..   .+.++|-++.... 
T Consensus       164 W~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~ieGhaa~--F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~  238 (494)
T 1bpo_A          164 WLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGHAAS--FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT  238 (494)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEESTT---CCEEEECCSEEE--EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT
T ss_pred             eEEEEeecccCCcccceEEEeeccc---cccchheeeeee--eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc
Confidence            8875542       36788888743   444555555321  111111111   123333332   3789999986531 


Q ss_pred             --CCC--ce---e---ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          354 --ADP--IK---L---KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       354 --~~~--~~---~---~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                        ...  ..   +   ..-.+-..++..++.. ..+.....-|.|+++|++++.++..
T Consensus       239 ~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          239 GNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             TCCCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeee
Confidence              100  00   1   1123456678888877 7888999999999999999998876

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.22  E-value=0.061  Score=48.00  Aligned_cols=230  Identities=13%  Similarity=0.108  Sum_probs=106.6

Q ss_pred             CCcEEEEee-CC-----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC-----CcE
Q 010390           64 NSHIFAVSD-ED-----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD-----QTI  132 (512)
Q Consensus        64 ~~~~latg~-~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-----g~i  132 (512)
                      ++.+++.|+ .+     ..+.+||..+..-..           +..+.........+.  -++..++.|+.+     ..+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-----------~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~   80 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-----------LPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSV   80 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEE-----------CCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCE
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-----------CCCCChhhccccEEE--ECCEEEEEcCCCCCccCceE
Confidence            556777776 33     368888876653211           111111111111122  256677777754     468


Q ss_pred             EEEeCCCCe---e--eecccCcCCCEEEEEeeCCCCCeEEEEeCCC-----cEEEEeCCCCCCCCCccccceeeeccccc
Q 010390          133 KIWDAEKKK---C--TGALMGHTGSIKSLCSHPTNSDILVSGSRDG-----SFAIWDLRCKSSPKSNCAESFVFSSAVVK  202 (512)
Q Consensus       133 ~iwd~~~~~---~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  202 (512)
                      .+||+.+.+   -  +..+......-.++.+  ++ .+++.|+.++     .+.+||+.+.+-...              
T Consensus        81 ~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~--------------  143 (301)
T 2vpj_A           81 ECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQWSML--------------  143 (301)
T ss_dssp             EEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEE--------------
T ss_pred             EEEECCCCCCCeeEECCCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCeEEEC--------------
Confidence            999987765   2  2222211112222222  33 6777776543     467777664321110              


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecC-----CeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-----SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                 ............+.  -++..++. |+.+     ..+.+||+.+.+-......+.         .....
T Consensus       144 -----------~~~p~~r~~~~~~~--~~~~iyv~-GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~---------~r~~~  200 (301)
T 2vpj_A          144 -----------GDMQTAREGAGLVV--ASGVIYCL-GGYDGLNILNSVEKYDPHTGHWTNVTPMAT---------KRSGA  200 (301)
T ss_dssp             -----------EECSSCCBSCEEEE--ETTEEEEE-CCBCSSCBCCCEEEEETTTTEEEEECCCSS---------CCBSC
T ss_pred             -----------CCCCCCcccceEEE--ECCEEEEE-CCCCCCcccceEEEEeCCCCcEEeCCCCCc---------ccccc
Confidence                       00000001111122  24444444 5443     458889988765433211111         01111


Q ss_pred             eEEEeCCCCCEEEEEecC-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC-----CEEEE
Q 010390          278 SSLSQDSNGVFLTASCMD-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG-----NAYVW  347 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iw  347 (512)
                      ..+.+  ++.+++.|+.+     ..+.+||+.+..-..+..+......  ...+.  -++++++.|+.++     .+.+|
T Consensus       201 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~--~~~~~--~~~~i~v~GG~~~~~~~~~v~~y  274 (301)
T 2vpj_A          201 GVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY--VGATV--LRGRLYAIAGYDGNSLLSSIECY  274 (301)
T ss_dssp             EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS--CEEEE--ETTEEEEECCBCSSSBEEEEEEE
T ss_pred             eEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc--eeEEE--ECCEEEEEcCcCCCcccccEEEE
Confidence            22222  56777777754     4688999865432222211111111  11122  2567777777553     46777


Q ss_pred             ecCCC
Q 010390          348 QVNKP  352 (512)
Q Consensus       348 ~~~~~  352 (512)
                      |..+.
T Consensus       275 d~~~~  279 (301)
T 2vpj_A          275 DPIID  279 (301)
T ss_dssp             ETTTT
T ss_pred             cCCCC
Confidence            77654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.18  E-value=0.072  Score=47.74  Aligned_cols=106  Identities=8%  Similarity=0.076  Sum_probs=53.1

Q ss_pred             cCCCcEEEEeeCC----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----C----
Q 010390           62 SKNSHIFAVSDED----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----D----  129 (512)
Q Consensus        62 s~~~~~latg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----d----  129 (512)
                      .-++.+++.|+.+    ..+.+||..+..-...      ...+. ....|     +++.. ++..++.|+.    +    
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~------~~~p~-~r~~~-----~~~~~-~~~lyv~GG~~~~~~~~~~   88 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL------ADLQV-PRSGL-----AGCVV-GGLLYAVGGRNNSPDGNTD   88 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEEC------CCCSS-CCBSC-----EEEEE-TTEEEEECCEEEETTEEEE
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC------CCCCc-ccccc-----eEEEE-CCEEEEECCCcCCCCCCee
Confidence            4567788888742    3588888776532110      00000 01112     12222 5666777765    2    


Q ss_pred             -CcEEEEeCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCC-----CcEEEEeCCCC
Q 010390          130 -QTIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRD-----GSFAIWDLRCK  183 (512)
Q Consensus       130 -g~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vwd~~~~  183 (512)
                       ..+.+||+.+.+-..  .+......-..+.+  ++ .+++.|+.+     ..+.+||+.+.
T Consensus        89 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           89 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTT
T ss_pred             cceEEEECCCCCeEeECCCCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCC
Confidence             468899988765322  22211112222222  33 677776643     35777777654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.16  E-value=0.052  Score=48.48  Aligned_cols=109  Identities=10%  Similarity=0.031  Sum_probs=56.2

Q ss_pred             CCCEEEEEecC-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-----CCEEEEecCCCCC
Q 010390          285 NGVFLTASCMD-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-----GNAYVWQVNKPQA  354 (512)
Q Consensus       285 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iw~~~~~~~  354 (512)
                      ++++++.|+.+     ..+.+||+.+..-..+..+......  ...+.  -++++++.|+.+     ..+.+||+.+.+-
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  234 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSG--AGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW  234 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBS--CEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccccc--ceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence            56777777654     4688899765332222111111111  11122  256777777764     4589999876532


Q ss_pred             CC-ceeccccCCeEEEEeCCCCCCeEEEEeCC-----CcEEEEeCCCCcccc
Q 010390          355 DP-IKLKSHDGEVTAVNWCPNEAGKIVTSSDD-----YTVRLWSLENSRCSS  400 (512)
Q Consensus       355 ~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~  400 (512)
                      .. ..+.........+.+  ++ .+++.|+.+     ..+.+||+++.+...
T Consensus       235 ~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  283 (301)
T 2vpj_A          235 TTVTSMTTPRCYVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPIIDSWEV  283 (301)
T ss_dssp             EEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred             EECCCCCCcccceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence            10 001111111222333  45 677777765     467888888766443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.15  E-value=0.096  Score=46.73  Aligned_cols=62  Identities=13%  Similarity=0.245  Sum_probs=34.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCCC-----cEEEEeCCCC
Q 010390          119 EDTNILTASGD-----QTIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRDG-----SFAIWDLRCK  183 (512)
Q Consensus       119 ~~~~l~s~~~d-----g~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~  183 (512)
                      ++..++.|+.+     ..+.+||..+.+-.  ..+......-.++.+  ++ .+++.|+.++     .+.+||+.+.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~  134 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVEAYNIKSN  134 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEEEEETTTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CC-EEEEEcCCCCCccCceEEEEeCCCC
Confidence            66677777754     35889998876532  222211111222222  34 6777777653     4667776643

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.12  E-value=0.16  Score=46.55  Aligned_cols=102  Identities=8%  Similarity=0.076  Sum_probs=58.9

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccccccccee---ccccCCCcEEEEEEecC---CCEEE
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARIS---DWVAHQNAIFDLCWIKE---DTNIL  124 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~V~~l~~s~~---~~~l~  124 (512)
                      ..+.+|+|   .|||+++++ ..+|.|+++|. ++.            ..+.   .+.........|+++|+   +..|.
T Consensus        29 ~~P~~ia~---~pdG~l~V~-e~~g~I~~~d~-~G~------------~~~~~~~v~~~g~~g~~gia~~pdf~~~g~ly   91 (354)
T 3a9g_A           29 EVPWSIAP---LGGGRYLVT-ERPGRLVLISP-SGK------------KLVASFDVANVGEAGLLGLALHPEFPKKSWVY   91 (354)
T ss_dssp             SCEEEEEE---EETTEEEEE-ETTTEEEEECS-SCE------------EEEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred             CCCeEEEE---cCCCeEEEE-eCCCEEEEEeC-CCc------------eEeeccceeecCCCceeeEEeCCCCCcCCEEE
Confidence            34678888   889985554 56699999973 221            0111   11223457899999997   55555


Q ss_pred             EEeC----C----CcEEEEeCCCC-------eee-ecccC-cCCCEEEEEeeCCCCCeEEEEe
Q 010390          125 TASG----D----QTIKIWDAEKK-------KCT-GALMG-HTGSIKSLCSHPTNSDILVSGS  170 (512)
Q Consensus       125 s~~~----d----g~i~iwd~~~~-------~~~-~~~~~-h~~~v~~l~~~~~~~~~l~s~~  170 (512)
                      .+..    +    +.|..|+....       +.+ ..+.. .......|+|.|++ .++++.+
T Consensus        92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G  153 (354)
T 3a9g_A           92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTG  153 (354)
T ss_dssp             EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECC
T ss_pred             EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEEC
Confidence            4432    3    56777776544       111 11221 11124578999988 6666644

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.10  E-value=0.16  Score=46.46  Aligned_cols=109  Identities=10%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC---CCEEEEEe-
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE---DTNILTAS-  127 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~---~~~l~s~~-  127 (512)
                      .+.+|+|   .|+|++|.++...|.|++++.+......  .    .. ..............|+|+|+   +..|..+. 
T Consensus        19 ~P~~i~~---~pdG~~l~V~e~~G~i~~~~~~g~~~~~--~----~~-~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~   88 (353)
T 2g8s_A           19 HPWALAF---LPDNHGMLITLRGGELRHWQAGKGLSAP--L----SG-VPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS   88 (353)
T ss_dssp             SEEEEEE---CSTTCCEEEEETTTEEEEEETTTEECCC--C----BS-CCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred             CcEEEEE---cCCCCEEEEEeCCceEEEEeCCCceeeE--e----cC-CcccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence            4578888   9999934445568999999854321100  0    00 00111223457789999995   45554332 


Q ss_pred             C-------CCcEEEEeCCCC-------eee-ecccC---cCCCEEEEEeeCCCCCeEEEEeC
Q 010390          128 G-------DQTIKIWDAEKK-------KCT-GALMG---HTGSIKSLCSHPTNSDILVSGSR  171 (512)
Q Consensus       128 ~-------dg~i~iwd~~~~-------~~~-~~~~~---h~~~v~~l~~~~~~~~~l~s~~~  171 (512)
                      .       ...|..|++..+       +.+ ..+..   .......|.|.|++ .++++.+.
T Consensus        89 ~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd  149 (353)
T 2g8s_A           89 EVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGE  149 (353)
T ss_dssp             EECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECC
T ss_pred             CCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECC
Confidence            2       234666665432       111 11211   11123579999988 66665543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.10  E-value=0.15  Score=46.05  Aligned_cols=240  Identities=8%  Similarity=0.009  Sum_probs=118.6

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---eeec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK---CTGA-LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      ...+.+|.|.+++..++ ++.+|.|. .....++   .+.. .......+.+|.|.+ + ..++ ++.++.|.. ....+
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~-~g~~g~i~~-S~DgG  108 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWI-VGEPPIMLH-TTDGG  108 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEE-EEETTEEEE-ESSTT
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEE-EECCCeEEE-ECCCC
Confidence            35789999987777676 45677653 3333332   2211 112244688999976 3 4444 455564433 22222


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      +.-...                        .........+..+.+.+++..+++ + .++.|.. ..+.++.-...    
T Consensus       109 ~tW~~~------------------------~~~~~~~~~~~~i~~~~~~~~~~~-~-~~g~v~~-S~DgG~tW~~~----  157 (327)
T 2xbg_A          109 QSWSQI------------------------PLDPKLPGSPRLIKALGNGSAEMI-T-NVGAIYR-TKDSGKNWQAL----  157 (327)
T ss_dssp             SSCEEC------------------------CCCTTCSSCEEEEEEEETTEEEEE-E-TTCCEEE-ESSTTSSEEEE----
T ss_pred             CCceEC------------------------ccccCCCCCeEEEEEECCCCEEEE-e-CCccEEE-EcCCCCCCEEe----
Confidence            211100                        000011234567777766655443 4 3554422 11222221111    


Q ss_pred             ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390          264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN  343 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  343 (512)
                            .......+..+.+.+++.+++++...+..+-.|-..   ..-.... ......+..+++.++++.++++ .+|.
T Consensus       158 ------~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG---~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~-~~G~  226 (327)
T 2xbg_A          158 ------VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQ---TAWEPHN-RTTSRRLHNMGFTPDGRLWMIV-NGGK  226 (327)
T ss_dssp             ------ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTC---SSCEEEE-CCSSSCEEEEEECTTSCEEEEE-TTTE
T ss_pred             ------ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCC---CceeECC-CCCCCccceeEECCCCCEEEEe-CCce
Confidence                  111224578899999988877664433333333201   1111111 1122345678888988766554 4677


Q ss_pred             EEEEecCCCCC--CCcee-ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390          344 AYVWQVNKPQA--DPIKL-KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC  398 (512)
Q Consensus       344 i~iw~~~~~~~--~~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  398 (512)
                      +++.+.+.++.  ..... ..+...+.++++.+++ .+++.+ .+|.| .+..+.|+.
T Consensus       227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g-~~g~i-~~S~DgG~t  281 (327)
T 2xbg_A          227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPN-EVWLAG-GAGAL-LCSQDGGQT  281 (327)
T ss_dssp             EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSS-CEEEEE-STTCE-EEESSTTSS
T ss_pred             EEEecCCCCCeeEeccCCcccCCcceEEEEecCCC-EEEEEe-CCCeE-EEeCCCCcc
Confidence            77764221211  01100 0123458899999876 555554 46766 455565543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.08  E-value=0.13  Score=47.46  Aligned_cols=154  Identities=14%  Similarity=0.178  Sum_probs=96.6

Q ss_pred             EEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC
Q 010390          227 LYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL  306 (512)
Q Consensus       227 ~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  306 (512)
                      ....++..++++  .++.||.-++...........+.       ......|..+..+|+|.+|+..+ +..|.|..+...
T Consensus        27 ~~~~n~t~i~~a--~~n~iR~~~i~~~~~Yk~L~~~~-------~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~   96 (452)
T 3pbp_A           27 FSSQNGTRIVFI--QDNIIRWYNVLTDSLYHSLNFSR-------HLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWG   96 (452)
T ss_dssp             EEETTTTEEEEE--ETTEEEEEETTTCSSCEEEECTT-------TCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTT
T ss_pred             EEEcCCCEEEEE--ECCEEEEEECCCCCcceEEecCc-------ccccCceeEEEECCCCCEEEEec-CCeEEEEEecCc
Confidence            344567777664  47889988887533221111000       00123578899999999999885 558888887632


Q ss_pred             CCC----------ceEeeeece----eceeEEEEEECCC---CCEEEEecCCCCEEEEecCCCCCCCceec---------
Q 010390          307 DKG----------PIQHFSGCR----IESFYVKSEICPN---ASHILSGSSDGNAYVWQVNKPQADPIKLK---------  360 (512)
Q Consensus       307 ~~~----------~~~~~~~~~----~~~~~~~~~~s~~---~~~l~~g~~dg~i~iw~~~~~~~~~~~~~---------  360 (512)
                      ...          ..+.+.-..    ....+..+.|+|-   +..|++-..|+.|++||+.........+.         
T Consensus        97 ~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d  176 (452)
T 3pbp_A           97 YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLD  176 (452)
T ss_dssp             CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESC
T ss_pred             cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCC
Confidence            111          111222111    2356889999996   56788999999999999986332222222         


Q ss_pred             cccCCeEEEEeCCCCCCeEEEEe--CCCcEEEE
Q 010390          361 SHDGEVTAVNWCPNEAGKIVTSS--DDYTVRLW  391 (512)
Q Consensus       361 ~h~~~v~~v~~~~~~~~~l~s~~--~dg~i~vw  391 (512)
                      .+...|.+++|.+++ -.|...+  .+|.|+-.
T Consensus       177 ~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          177 ARVNDITDLEFSKDG-LTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SSCCCEEEEEECTTS-SCEEEEECTTSCEEEEE
T ss_pred             cccceEEEEEEcCCC-cEEEEEecCCCCCEEEE
Confidence            223578999999976 6666644  77877654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.08  E-value=0.17  Score=46.27  Aligned_cols=249  Identities=8%  Similarity=-0.008  Sum_probs=124.1

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-eeecc---cCcCCCEEEEEeeCC---CCCeEEEEeC---C----C
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-CTGAL---MGHTGSIKSLCSHPT---NSDILVSGSR---D----G  173 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---~~h~~~v~~l~~~~~---~~~~l~s~~~---d----g  173 (512)
                      -.....|+|.|+|++++ +..+|.|++++ .+++ .+..+   .........|+++|+   +..++++-..   +    .
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34678999999997555 55679999997 4554 22221   112346889999997   4345454432   2    4


Q ss_pred             cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec------------
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV------------  241 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~------------  241 (512)
                      .|..|+........  .....+..              .......|  ....++|.|++..+++.|..            
T Consensus       106 ~v~r~~~~~~~~~~--~~~~~l~~--------------~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~  167 (354)
T 3a9g_A          106 RVIRGRLDGSTFKL--KEVKTLID--------------GIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSL  167 (354)
T ss_dssp             EEEEEEECSSSCCE--EEEEEEEE--------------EEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCC
T ss_pred             EEEEEEECCCCcCc--CccEEEEE--------------cCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCC
Confidence            56667665331000  00000000              00000112  34678999999877765531            


Q ss_pred             CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecCC---eEEEEEcccC-----------
Q 010390          242 NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDH---RIYLYNVLQL-----------  306 (512)
Q Consensus       242 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~-----------  306 (512)
                      .|.|.-++.... ....  .+.... ............++|++ ++.++++-...+   .|.+..--..           
T Consensus       168 ~G~I~ri~~dG~-~p~~--npf~~~-~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~  243 (354)
T 3a9g_A          168 AGKILRVDEEGR-PPAD--NPFPNS-PIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAG  243 (354)
T ss_dssp             SSEEEEECTTSC-CCTT--SSSTTC-CEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCC
T ss_pred             CeEEEEEcCCCC-CCCC--CCCCCC-cEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCC
Confidence            244555554321 0000  000000 01111122356899999 566544433222   2433321000           


Q ss_pred             ---CCCceEeeeeceeceeEEEEEEC-------CCCCEEEEecCCCCEEEEecCCCCCCC--ce-eccccCCeEEEEeCC
Q 010390          307 ---DKGPIQHFSGCRIESFYVKSEIC-------PNASHILSGSSDGNAYVWQVNKPQADP--IK-LKSHDGEVTAVNWCP  373 (512)
Q Consensus       307 ---~~~~~~~~~~~~~~~~~~~~~~s-------~~~~~l~~g~~dg~i~iw~~~~~~~~~--~~-~~~h~~~v~~v~~~~  373 (512)
                         ...+...+.  ........++|.       .+|.++++.-..+.|...++.......  .. +.+-...+..+++.|
T Consensus       244 ~~~~~~p~~~~~--~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p  321 (354)
T 3a9g_A          244 RGEFVDPVIDTG--SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD  321 (354)
T ss_dssp             CTTSCCCSEECT--TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT
T ss_pred             CCCCcCCEeecC--CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC
Confidence               001112210  011234567773       567777777777788888887532111  12 222245789999999


Q ss_pred             CCCCeEEEEe
Q 010390          374 NEAGKIVTSS  383 (512)
Q Consensus       374 ~~~~~l~s~~  383 (512)
                      || .++++..
T Consensus       322 DG-~lyv~~~  330 (354)
T 3a9g_A          322 DG-GILISTS  330 (354)
T ss_dssp             TS-CEEEEEC
T ss_pred             CC-cEEEEEe
Confidence            98 6666654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.01  E-value=0.17  Score=45.14  Aligned_cols=103  Identities=11%  Similarity=0.074  Sum_probs=52.8

Q ss_pred             CcEEEEeeCC--CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC----CcEEEEeCC
Q 010390           65 SHIFAVSDED--GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD----QTIKIWDAE  138 (512)
Q Consensus        65 ~~~latg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----g~i~iwd~~  138 (512)
                      +.+++.|+.+  ..+.+||..+..-..           +..+......-..+.  -++..++.|+.+    ..+.+||+.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~-----------~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~   78 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTD-----------IRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVV   78 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEE-----------CCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETT
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEec-----------CCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCC
Confidence            4466666643  568888887653211           111111111111222  266677777754    668899988


Q ss_pred             CCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCC------CcEEEEeCCCC
Q 010390          139 KKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRD------GSFAIWDLRCK  183 (512)
Q Consensus       139 ~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~  183 (512)
                      +.+-.  ..+......-..+.+  ++ .+++.|+.+      ..+.+||..+.
T Consensus        79 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~  128 (306)
T 3ii7_A           79 KDSWYSKLGPPTPRDSLAACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTE  128 (306)
T ss_dssp             TTEEEEEECCSSCCBSCEEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred             CCeEEECCCCCccccceeEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCC
Confidence            77532  222211111122222  33 677777765      45778887654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.95  E-value=0.23  Score=53.09  Aligned_cols=271  Identities=11%  Similarity=0.061  Sum_probs=154.1

Q ss_pred             CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCC
Q 010390           73 EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGS  152 (512)
Q Consensus        73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~  152 (512)
                      ....|.|.|+..+...            .+.-..-.    +.-.+|..+.|+.-. ..++.|+|+++.+.+..+.-. .+
T Consensus        46 ~~~~vvIidl~~~~~~------------~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~  107 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNP------------IRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DD  107 (1630)
T ss_pred             CCceEEEEECCCCCCc------------ccccccch----hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CC
Confidence            3447999998775321            11111111    233567666666443 678999999998877776643 45


Q ss_pred             EEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecC
Q 010390          153 IKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE  232 (512)
Q Consensus       153 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  232 (512)
                      |.-=.|-..  +.|+-.+. ..|..|++.....+.....                    +...+  ....|..-..+++.
T Consensus       108 VvfWkWis~--~~l~lVT~-~aVyHW~~~~~s~P~k~fd--------------------R~~~L--~~~QIinY~~d~~~  162 (1630)
T 1xi4_A          108 VTFWKWISL--NTVALVTD-NAVYHWSMEGESQPVKMFD--------------------RHSSL--AGCQIINYRTDAKQ  162 (1630)
T ss_pred             ceEEEecCC--CeeEEEcC-CeEEEeccCCCCccHHHHh--------------------cchhc--ccCeeEEeeeCCCC
Confidence            655566543  45555543 5899999975322211100                    00011  13456666777888


Q ss_pred             CEEEEEee------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC--C-CCEEEEEec---CCeEEE
Q 010390          233 VSIATASA------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS--N-GVFLTASCM---DHRIYL  300 (512)
Q Consensus       233 ~~l~~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~l~~~~~---dg~i~i  300 (512)
                      ++++..|-      ..|.+.+|..+.....            ...+|......+....  . ...++.+..   .+.++|
T Consensus       163 kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ------------~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi  230 (1630)
T 1xi4_A          163 KWLLLTGISAQQNRVVGAMQLYSVDRKVSQ------------PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  230 (1630)
T ss_pred             CeEEEEeeccCCCcccceeeeeecccccch------------hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence            88887663      3478888887765433            2444444443333321  1 122322222   378999


Q ss_pred             EEcccC-CCCceE-------eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeC
Q 010390          301 YNVLQL-DKGPIQ-------HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC  372 (512)
Q Consensus       301 ~d~~~~-~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~  372 (512)
                      .++... ...+..       .+.......+.+.+..++....+..-+.-|.|++||+.++... ..-+-....|...+-.
T Consensus       231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i-~~~ris~~~iF~~~~~  309 (1630)
T 1xi4_A          231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRISGETIFVTAPH  309 (1630)
T ss_pred             EecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh-hhccccCCceEEeccC
Confidence            998543 111111       1222233456677888998889988999999999999998763 3333334455544444


Q ss_pred             CCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          373 PNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       373 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      ... .=++.....|.|.--.++....+.
T Consensus       310 ~~~-~g~~~vnr~G~vl~v~v~~~~iv~  336 (1630)
T 1xi4_A          310 EAT-AGIIGVNRKGQVLSVCVEEENIIP  336 (1630)
T ss_pred             CCC-CceEEEcCCceEEEEEEccchhhh
Confidence            433 234444466766666666555443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.93  E-value=0.23  Score=45.42  Aligned_cols=60  Identities=15%  Similarity=0.332  Sum_probs=38.1

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee---ecc----cCcCCCEEEEEeeCC---CCCeEEEE
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT---GAL----MGHTGSIKSLCSHPT---NSDILVSG  169 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~----~~h~~~v~~l~~~~~---~~~~l~s~  169 (512)
                      .....|+|.|+|++|+.+...|.|++++.. ++..   ..+    .........|+++|+   +..+.++-
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            456899999999834445578999999853 4322   111    112346789999996   43444443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.90  E-value=0.16  Score=45.37  Aligned_cols=230  Identities=9%  Similarity=0.048  Sum_probs=108.1

Q ss_pred             EEEEEeC--CCcEEEEeCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCCCCCCccccc
Q 010390          122 NILTASG--DQTIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       122 ~l~s~~~--dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~  193 (512)
                      .++.|+.  ...+.+||..+++-..  .+......-..+.+  ++ .+++.|+.+    ..+.+||+.+.+-...     
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~-----   85 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DN-VVYILGGSQLFPIKRMDCYNVVKDSWYSK-----   85 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TT-EEEEECCBSSSBCCEEEEEETTTTEEEEE-----
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CC-EEEEEeCCCCCCcceEEEEeCCCCeEEEC-----
Confidence            4445554  3568899988875322  22211112222222  33 677777754    5677777765421110     


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC------CeEEEEeccCccceecccCCCcccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN------SIVKFWDTRNLKAQITQAWPHAESS  267 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~  267 (512)
                                          ............+.+  ++..++. |+.+      ..+.+||..+.+-......+..   
T Consensus        86 --------------------~~~p~~r~~~~~~~~--~~~iyv~-GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---  139 (306)
T 3ii7_A           86 --------------------LGPPTPRDSLAACAA--EGKIYTS-GGSEVGNSALYLFECYDTRTESWHTKPSMLTQ---  139 (306)
T ss_dssp             --------------------ECCSSCCBSCEEEEE--TTEEEEE-CCBBTTBSCCCCEEEEETTTTEEEEECCCSSC---
T ss_pred             --------------------CCCCccccceeEEEE--CCEEEEE-CCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC---
Confidence                                000000111111222  4444444 5444      4588899887653332111110   


Q ss_pred             ccccccccCeeEEEeCCCCCEEEEEec---------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390          268 SAKETRLHGISSLSQDSNGVFLTASCM---------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  338 (512)
                        .    .....+.+  ++++++.|+.         -..+.+||+.+..-..+..+......  ...+.+  ++++++.|
T Consensus       140 --r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~--~~~i~v~G  207 (306)
T 3ii7_A          140 --R----CSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN--HGLVFV--KDKIFAVG  207 (306)
T ss_dssp             --C----BSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS--CEEEEE--TTEEEEEC
T ss_pred             --c----ceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc--ceEEEE--CCEEEEEe
Confidence              1    11112222  5666666653         34588899865432222211111111  111222  56777777


Q ss_pred             cCC-----CCEEEEecCCCCCC-CceeccccCCeEEEEeCCCCCCeEEEEeCC-----CcEEEEeCCCCcccc
Q 010390          339 SSD-----GNAYVWQVNKPQAD-PIKLKSHDGEVTAVNWCPNEAGKIVTSSDD-----YTVRLWSLENSRCSS  400 (512)
Q Consensus       339 ~~d-----g~i~iw~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~  400 (512)
                      +.+     ..+.+||..+.+-. +..+.........+.+  ++ .+++.|+.+     ..+.+||+.+.+-..
T Consensus       208 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  277 (306)
T 3ii7_A          208 GQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTETDKWVA  277 (306)
T ss_dssp             CEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred             CCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence            754     35888998765311 1111111112233333  44 688888754     467888888766443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.88  E-value=0.15  Score=45.46  Aligned_cols=109  Identities=15%  Similarity=0.098  Sum_probs=54.8

Q ss_pred             CCCEEEEEecC-------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-----CCEEEEecCCC
Q 010390          285 NGVFLTASCMD-------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-----GNAYVWQVNKP  352 (512)
Q Consensus       285 ~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iw~~~~~  352 (512)
                      ++++++.|+.+       ..+.+||+.+..-..+..+......  ...+.  -++++++.|+.+     ..+.+||..+.
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG--AGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS--CEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc--ccEEE--ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            56666666542       4588899765332222111111111  11122  256777887764     36889998765


Q ss_pred             CCCC-ceeccccCCeEEEEeCCCCCCeEEEEeCCC-----cEEEEeCCCCcccc
Q 010390          353 QADP-IKLKSHDGEVTAVNWCPNEAGKIVTSSDDY-----TVRLWSLENSRCSS  400 (512)
Q Consensus       353 ~~~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~  400 (512)
                      +-.. ..+......-..+.+  ++ .+++.|+.++     .+.+||+.+.+...
T Consensus       231 ~W~~~~~~~~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  281 (302)
T 2xn4_A          231 AWRQVADMNMCRRNAGVCAV--NG-LLYVVGGDDGSCNLASVEYYNPTTDKWTV  281 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CEeeCCCCCCccccCeEEEE--CC-EEEEECCcCCCcccccEEEEcCCCCeEEE
Confidence            3210 001000111122222  44 6777777653     48888888776543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.77  E-value=0.21  Score=46.02  Aligned_cols=168  Identities=14%  Similarity=0.180  Sum_probs=97.6

Q ss_pred             ecCCCEEEEEeCCCcEEEEeCCCCeeeecccCc----CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc-c-
Q 010390          117 IKEDTNILTASGDQTIKIWDAEKKKCTGALMGH----TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN-C-  190 (512)
Q Consensus       117 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~-  190 (512)
                      +.+|..|+.+- ++.||.-++......+.+...    -..|..+..+|+| .+||..+. ..|.|-.+..+...... . 
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFND-NEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEECS-SEEEEEECCTTCSCCCCHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEecC-CeEEEEEecCccccCccccc
Confidence            34777777664 578888888754444444322    2257889999988 78877765 58999988743322211 0 


Q ss_pred             -ccceeeeccccccccccccccccee-cccccccEEEEEEeecC---CEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          191 -AESFVFSSAVVKGAHLLSQSKRVSR-RKAASMSITSVLYLKDE---VSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       191 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~---~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                       ........             .... ......+|..+.|||-+   ..+++.. .|+.|++||+........ ......
T Consensus       106 ~~~~q~~ty-------------~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~-~L~k~~  170 (452)
T 3pbp_A          106 QDAFQIFHY-------------SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPI-VLNKPN  170 (452)
T ss_dssp             HHTTEEEEE-------------EGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCE-EESCCC
T ss_pred             ccccceeEE-------------EcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCc-chhccc
Confidence             00000000             0000 01135789999999954   4566544 699999999986322111 000100


Q ss_pred             ccccccccccCeeEEEeCCCCCEEEEEe--cCCeEEEEE
Q 010390          266 SSSAKETRLHGISSLSQDSNGVFLTASC--MDHRIYLYN  302 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d  302 (512)
                      ...........|.+++|..++-.|++.+  .+|.|+-.-
T Consensus       171 ~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          171 NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence            0001122336788999999888777755  778877654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.75  E-value=0.31  Score=44.28  Aligned_cols=192  Identities=10%  Similarity=0.167  Sum_probs=104.5

Q ss_pred             cEEEEEEecCCCEEEEE------------eCCCcEEEEeCCCC--eee-ecccC-----cCCCEEEEEeeCC--CCCeEE
Q 010390          110 AIFDLCWIKEDTNILTA------------SGDQTIKIWDAEKK--KCT-GALMG-----HTGSIKSLCSHPT--NSDILV  167 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~------------~~dg~i~iwd~~~~--~~~-~~~~~-----h~~~v~~l~~~~~--~~~~l~  167 (512)
                      ..-++...|+|..++++            ..+|.|.++|..+.  +.. -.+.+     .......+.+.++  +...|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34455667776554444            26899999998742  211 11222     2346778887663  322343


Q ss_pred             EE-eC--CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc-cccccEEEEEEeecCCEEEEEee---
Q 010390          168 SG-SR--DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK-AASMSITSVLYLKDEVSIATASA---  240 (512)
Q Consensus       168 s~-~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~g~---  240 (512)
                      .+ ..  +.+|.+|++.........                       ..... ..-...+.+.+.++|..+++...   
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~-----------------------~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ft  187 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLH-----------------------LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFI  187 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEE-----------------------EEEECCTTCSSEEEEEEEETTEEEEEESCSCS
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEE-----------------------EeccccCCCCCCceEEEeCCCCEEecCCcEeC
Confidence            33 33  457788877643221100                       00000 11235788999999886664220   


Q ss_pred             -------------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccC
Q 010390          241 -------------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQL  306 (512)
Q Consensus       241 -------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~  306 (512)
                                   ..|.|..+|..  +..            .........+.++|+||++.|+++. ..+.|..|++...
T Consensus       188 d~~~~~~e~~~~~~~g~vyr~d~~--~~~------------~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~  253 (355)
T 3sre_A          188 DPYLKSWEMHLGLAWSFVTYYSPN--DVR------------VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  253 (355)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEECTT--CCE------------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CcccccchhhccCCccEEEEEECC--eEE------------EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence                         12445555542  111            1222234578899999998887765 5689999998632


Q ss_pred             C-CCceEeeeeceeceeEEEEEECC-CCCEEEEecCC
Q 010390          307 D-KGPIQHFSGCRIESFYVKSEICP-NASHILSGSSD  341 (512)
Q Consensus       307 ~-~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~d  341 (512)
                      . ......+   ......-.+++++ +|++.+++..+
T Consensus       254 g~l~~~~~~---~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          254 WTLTPLRVL---SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             SCEEEEEEE---ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             CcEecCEEE---eCCCCCceEEEeCCCCcEEEEecCC
Confidence            1 1111122   1123455688888 58877766533

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.67  E-value=0.22  Score=44.54  Aligned_cols=109  Identities=12%  Similarity=0.071  Sum_probs=55.0

Q ss_pred             CCCEEEEEecC-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-----CCEEEEecCCCCC
Q 010390          285 NGVFLTASCMD-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-----GNAYVWQVNKPQA  354 (512)
Q Consensus       285 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iw~~~~~~~  354 (512)
                      ++.+++.|+.+     ..+.+||+.+..-..+..+......  ...+.+  ++++++.|+.+     ..+.+||+.+.+-
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSG--AGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcccc--ceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence            56677777654     4688898755332222111111111  111222  66777777764     4589999876532


Q ss_pred             C-CceeccccCCeEEEEeCCCCCCeEEEEeCC-----CcEEEEeCCCCcccc
Q 010390          355 D-PIKLKSHDGEVTAVNWCPNEAGKIVTSSDD-----YTVRLWSLENSRCSS  400 (512)
Q Consensus       355 ~-~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~  400 (512)
                      . +..+.........+.+  ++ .+++.|+.+     ..+.+||+.+.+...
T Consensus       244 ~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  292 (308)
T 1zgk_A          244 TFVAPMKHRRSALGITVH--QG-RIYVLGGYDGHTFLDSVECYDPDTDTWSE  292 (308)
T ss_dssp             EECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             EECCCCCCCccceEEEEE--CC-EEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence            1 0011111111222222  44 677777754     357788887765433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.29  E-value=0.16  Score=42.07  Aligned_cols=153  Identities=10%  Similarity=-0.051  Sum_probs=80.2

Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY  301 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  301 (512)
                      .+..++|+|++...++   .+|.+.-.+..+.....-......    .-..--....++.|+++|.+.++  .||.|+-+
T Consensus        42 ~~~~laf~P~G~LYaV---~~G~Ly~~~~~t~~~~~W~~s~t~----IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~  112 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV---LNDKIYKGTPPTHDNDNWMGRAKK----IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKA  112 (236)
T ss_dssp             TCSEEEECTTSCEEEE---ETTEEEEESCCCSTTCCHHHHCEE----EECSCGGGCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred             cceeEEECCCccEEEE---eCCeEEEECCCCCCcccccccccE----ecccccccceEEEECCCCCEEEe--CCCEEEEe
Confidence            6779999998886665   478877776644222111000000    00001112478999999988777  66998877


Q ss_pred             EcccCCCCce-E--eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC-----Cceec-cccCCeEEEEeC
Q 010390          302 NVLQLDKGPI-Q--HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD-----PIKLK-SHDGEVTAVNWC  372 (512)
Q Consensus       302 d~~~~~~~~~-~--~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~-----~~~~~-~h~~~v~~v~~~  372 (512)
                      +-.+...... .  ..-+...-..+..+.+.|+|.+.++.  |+.++-.........     ...+. ..-..-+-+.|.
T Consensus       113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~  190 (236)
T 1tl2_A          113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS  190 (236)
T ss_dssp             SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred             CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence            7422111111 0  11111111245779999999988877  676543322211110     01111 222344556688


Q ss_pred             CCCCCeEEEEeCCCcE
Q 010390          373 PNEAGKIVTSSDDYTV  388 (512)
Q Consensus       373 ~~~~~~l~s~~~dg~i  388 (512)
                      +++ .+.+..  +|.+
T Consensus       191 ~~G-~l~~v~--~g~~  203 (236)
T 1tl2_A          191 SVG-TLFGVQ--GGKF  203 (236)
T ss_dssp             TTS-CEEEEE--TTEE
T ss_pred             CCC-cEEEEe--CCeE
Confidence            887 444444  6633

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.11  E-value=0.66  Score=44.03  Aligned_cols=114  Identities=9%  Similarity=0.022  Sum_probs=61.7

Q ss_pred             cccEEEEEEeecCCEEEEEeecC-CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC---CCEEEEEec-
Q 010390          220 SMSITSVLYLKDEVSIATASAVN-SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN---GVFLTASCM-  294 (512)
Q Consensus       220 ~~~v~~~~~~~~~~~l~~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~-  294 (512)
                      -.....|+|.|++..+++ - .. +.|++++..++........+...   ...........|+++|+   +..|+++.. 
T Consensus        26 l~~P~~~a~~pdG~l~V~-e-~~gg~I~~~~~~~g~~~~~~~~~~~~---~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~  100 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLT-E-RATGKILRVNPESGSVKTVFQVPEIV---NDADGQNGLLGFAFHPDFKNNPYIYISGTF  100 (454)
T ss_dssp             CSSEEEEEECTTSCEEEE-E-TTTCEEEEECTTTCCEEEEEECTTCC---CCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CCCceEEEEcCCCcEEEE-E-cCCCEEEEEECCCCcEeEEecCCccc---cccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence            346789999999986665 3 45 47888876544332111111000   00113456789999995   555554442 


Q ss_pred             ------------CCeEEEEEcccCCCC-----ceEe-eeeceeceeEEEEEECCCCCEEEEec
Q 010390          295 ------------DHRIYLYNVLQLDKG-----PIQH-FSGCRIESFYVKSEICPNASHILSGS  339 (512)
Q Consensus       295 ------------dg~i~i~d~~~~~~~-----~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~  339 (512)
                                  ...|..|++......     .+.. +.. ........++|.|||.+.++.+
T Consensus       101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEEC
Confidence                        235666665332111     1111 111 1123456799999998777644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.09  E-value=0.39  Score=51.48  Aligned_cols=228  Identities=14%  Similarity=0.128  Sum_probs=128.7

Q ss_pred             CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      ....|.|.|+.++..+..-.   -.--+.-.+|.. +.++.- ...++.++|+++...+.....                
T Consensus        46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~-~iiALr-ag~~lQiFnl~~k~klks~~~----------------  104 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPAS-KVIALK-AGKTLQIFNIEMKSKMKAHTM----------------  104 (1630)
T ss_pred             CCceEEEEECCCCCCccccc---ccchhhccCCCc-ceEEEe-cCCeEEEeehHHhhhhccccc----------------
Confidence            34479999998865442111   111233467765 555544 367999999988766554322                


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV  287 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (512)
                                  ...|.--.|..+...-++ +  +..|+-|++.....+......+.    .+  ....|..-..+++.+
T Consensus       105 ------------~e~VvfWkWis~~~l~lV-T--~~aVyHW~~~~~s~P~k~fdR~~----~L--~~~QIinY~~d~~~k  163 (1630)
T 1xi4_A          105 ------------TDDVTFWKWISLNTVALV-T--DNAVYHWSMEGESQPVKMFDRHS----SL--AGCQIINYRTDAKQK  163 (1630)
T ss_pred             ------------CCCceEEEecCCCeeEEE-c--CCeEEEeccCCCCccHHHHhcch----hc--ccCeeEEeeeCCCCC
Confidence                        234555566555544444 2  67899999976443333222221    11  135688888899999


Q ss_pred             EEEEEe-------cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-CCEEEEecC---CCCEEEEecCCC---C
Q 010390          288 FLTASC-------MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-ASHILSGSS---DGNAYVWQVNKP---Q  353 (512)
Q Consensus       288 ~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~---dg~i~iw~~~~~---~  353 (512)
                      +++..+       ..|.+.+|.......   ..+.||...-.-..+.=.+. ...++.+..   .+.++|-++...   .
T Consensus       164 W~~l~gi~~~~~~v~G~mQLyS~er~~s---Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~  240 (1630)
T 1xi4_A          164 WLLLTGISAQQNRVVGAMQLYSVDRKVS---QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN  240 (1630)
T ss_pred             eEEEEeeccCCCcccceeeeeecccccc---hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC
Confidence            877554       347889998754332   22333321100000000011 122222211   367889888543   1


Q ss_pred             CC-----Cceecc---ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          354 AD-----PIKLKS---HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       354 ~~-----~~~~~~---h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      ..     ...+..   -.+-..++..++.. ..+...+.-|.|+++|+.++.++..
T Consensus       241 ~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          241 QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             CCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhhh
Confidence            10     001111   13345567777776 6888888999999999999998876

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.08  E-value=0.49  Score=42.36  Aligned_cols=109  Identities=7%  Similarity=0.118  Sum_probs=54.4

Q ss_pred             CCCEEEEEec-C-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC-----CEEEEecCCCC
Q 010390          285 NGVFLTASCM-D-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG-----NAYVWQVNKPQ  353 (512)
Q Consensus       285 ~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iw~~~~~~  353 (512)
                      ++++++.|+. +     ..+.+||..+..-..+..+......  ...+.  -++++++.|+.++     .+.+||..+.+
T Consensus       148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL--FGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             TTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS--CEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc--eEEEE--ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            5667777765 2     4688999765332222111111111  11122  2667777777654     47888887653


Q ss_pred             CCC-ceeccccCCeEEEEeCCCCCCeEEEEeCCC--------------cEEEEeCCCCcccc
Q 010390          354 ADP-IKLKSHDGEVTAVNWCPNEAGKIVTSSDDY--------------TVRLWSLENSRCSS  400 (512)
Q Consensus       354 ~~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg--------------~i~vwd~~~~~~~~  400 (512)
                      -.. ..+.........+.+  ++ .+++.|+.++              .+.+||+.+.+-..
T Consensus       224 W~~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          224 WAPFEAFPQERSSLSLVSL--VG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred             EEECCCCCCcccceeEEEE--CC-EEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence            210 001111111222333  44 6777777542              46788888776444

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.02  E-value=0.84  Score=41.31  Aligned_cols=254  Identities=13%  Similarity=0.110  Sum_probs=124.5

Q ss_pred             cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee--eecc----cCcCCCEEEEEeeCC---CCCeEEEEe--CCCc
Q 010390          106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC--TGAL----MGHTGSIKSLCSHPT---NSDILVSGS--RDGS  174 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~~h~~~v~~l~~~~~---~~~~l~s~~--~dg~  174 (512)
                      ..-..-+.|+|.|+|..+++--..|.|++++..+++.  +..+    .........|+++|+   +..+.++-+  .+..
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            3345778999999999777765589999998765543  2211    223457899999995   323444322  3445


Q ss_pred             EEEEeCCCCCCC-CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec------------
Q 010390          175 FAIWDLRCKSSP-KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV------------  241 (512)
Q Consensus       175 i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~------------  241 (512)
                      |.-|.+...... ........+..              ....  ........|.|.|++..+++.|..            
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~--------------~~p~--~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~  172 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFR--------------GIPK--GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSL  172 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEE--------------EECC--CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCS
T ss_pred             EEEEEeCCCCcccccCCCcEEEEE--------------cCCC--CCCccCccccCCCCCCEEEEECCCCCCccccCCCCC
Confidence            555555442210 00000000000              0000  111234679999999877776631            


Q ss_pred             CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCC-------------
Q 010390          242 NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLD-------------  307 (512)
Q Consensus       242 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-------------  307 (512)
                      .|.|.-.+.... ...-.  +.... ............++|+|+|.+.++-. .++.=.|.-+..+.             
T Consensus       173 ~G~IlRi~~dG~-ip~~n--Pf~~~-~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~  248 (347)
T 3das_A          173 GGKILRMTPDGE-PAPGN--PFPGS-PVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGG  248 (347)
T ss_dssp             TTCEEEECTTSS-BCTTC--SSTTC-CEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCC
T ss_pred             CCEEEEEeCCCC-ccCCC--CCCCC-eEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCC
Confidence            234444443321 00000  00000 01111123366899999877555432 22211222111110             


Q ss_pred             ---CCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC---CCceeccccCCeEEEEeCCCCCCeEEE
Q 010390          308 ---KGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA---DPIKLKSHDGEVTAVNWCPNEAGKIVT  381 (512)
Q Consensus       308 ---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~---~~~~~~~h~~~v~~v~~~~~~~~~l~s  381 (512)
                         ..++..+..+  ......++|. ++..++..-..+.|....+.....   ....+.+..+.+.+|+..||| .++++
T Consensus       249 ~~~~~P~~~~~~~--~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG-~lyv~  324 (347)
T 3das_A          249 SGFHDPVAQWSTD--EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGD-KLWLV  324 (347)
T ss_dssp             TTCCCCSEEECTT--TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETT-EEEEE
T ss_pred             ccccCCcEecCCC--CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCC-cEEEE
Confidence               0111111111  0123345554 466666666666777777765431   112334445689999999999 55555


Q ss_pred             Ee
Q 010390          382 SS  383 (512)
Q Consensus       382 ~~  383 (512)
                      .+
T Consensus       325 td  326 (347)
T 3das_A          325 TS  326 (347)
T ss_dssp             EC
T ss_pred             Ec
Confidence            43

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.96  E-value=0.81  Score=40.61  Aligned_cols=213  Identities=8%  Similarity=-0.026  Sum_probs=107.3

Q ss_pred             EEEecCCCEEEEEeCC--------------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEe--CCC--cE
Q 010390          114 LCWIKEDTNILTASGD--------------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS--RDG--SF  175 (512)
Q Consensus       114 l~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg--~i  175 (512)
                      -.+++++.+|+-+...              ..|+..++...+... +..  ...  ..|++++ ..|+-..  .++  .|
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~~--~~~s~~g-~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DPC--IYASLIG-NYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SCE--EEEEEET-TEEEEEEESSSSCEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CCc--cEEEEeC-CEEEEEeecCCCCceE
Confidence            4557899999865442              367777777664332 221  122  2566777 4555443  334  44


Q ss_pred             EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390          176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA  255 (512)
Q Consensus       176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~  255 (512)
                      ...++......                            .+..+.  +  ..++++++.|+.+......|...++.....
T Consensus       132 y~~~~dGs~~~----------------------------~lt~~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~  179 (302)
T 3s25_A          132 YRIRIDGEEKK----------------------------KIKNHY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSE  179 (302)
T ss_dssp             EEEETTSCCCE----------------------------EEESSC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEE
T ss_pred             EEEECCCCCeE----------------------------EEeCCC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCE
Confidence            44455432211                            111111  1  345778888887654456788877766543


Q ss_pred             eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC--CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390          256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD--HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  333 (512)
                      ....           .   ... ...+.|++.+|+-...+  ..|..-++....   ...+....    +  ..++|+++
T Consensus       180 ~~l~-----------~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~---~~~Lt~~~----~--~~~~~~g~  235 (302)
T 3s25_A          180 ALFY-----------D---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN---PVVLTEAN----I--EHYNVYGS  235 (302)
T ss_dssp             EEEE-----------C---SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC---CEECSCSC----E--EEEEEETT
T ss_pred             EEEe-----------C---CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC---eEEEeCCC----c--ceEEECCC
Confidence            3211           1   111 12355888887766543  356666654432   22222211    1  34778888


Q ss_pred             EEEEec--CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          334 HILSGS--SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       334 ~l~~g~--~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      +|.-+.  ..+.|..-+++....  ..+..  +.+..+..  .+..+..+--..+.|..-++.
T Consensus       236 ~Iy~~~~~~~~~i~~~~~DG~~r--~~l~~--~~~~~i~i--~~d~Iy~td~~~~~i~~~~~d  292 (302)
T 3s25_A          236 LIFYQRGGDNPALCVVKNDGTGF--KELAK--GEFCNINV--TSQYVYFTDFVSNKEYCTSTQ  292 (302)
T ss_dssp             EEEEEECSSSCEEEEEETTSCCC--EEEEE--SCEEEEEE--CSSEEEEEETTTCCEEEEESS
T ss_pred             EEEEEECCCCcEEEEEECCCCcc--EEeeC--CccceEEE--eCCEEEEEECCCCeEEEEECC
Confidence            887553  235566666655433  22221  12444444  341344444344555544443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.85  E-value=0.94  Score=40.47  Aligned_cols=100  Identities=18%  Similarity=0.141  Sum_probs=48.6

Q ss_pred             EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----C-------CcEEEE
Q 010390           67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----D-------QTIKIW  135 (512)
Q Consensus        67 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----d-------g~i~iw  135 (512)
                      +++.|+  ..+.+||..+..-..            ..+..............++..++.|+.    +       ..+.+|
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~------------~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~   72 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC------------ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQF   72 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE------------EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEE
T ss_pred             EEEEcC--CceEEECCCCCeEec------------CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEe
Confidence            455565  478999987654210            111111111111222347777777873    1       127788


Q ss_pred             eCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCC--------CcEEEEeCCCC
Q 010390          136 DAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRD--------GSFAIWDLRCK  183 (512)
Q Consensus       136 d~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~vwd~~~~  183 (512)
                      |..+.+-..  .+......- +++.. ++ .+++.|+.+        ..+.+||..+.
T Consensus        73 d~~~~~W~~~~~~p~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~  127 (315)
T 4asc_A           73 DHLDSEWLGMPPLPSPRCLF-GLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSF  127 (315)
T ss_dssp             ETTTTEEEECCCBSSCEESC-EEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTT
T ss_pred             cCCCCeEEECCCCCcchhce-eEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCC
Confidence            988765322  221111111 12222 23 667777632        35777887654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.71  E-value=2.2  Score=43.65  Aligned_cols=247  Identities=8%  Similarity=-0.046  Sum_probs=127.1

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  188 (512)
                      ..|.++....++..|..|+.. -+..+|..+++...........|.++....++ . |..|+.+ -|.+++..+......
T Consensus       191 ~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigT~~-Gl~~~~~~~~~~~~~  266 (758)
T 3ott_A          191 LFVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQIKQTEAFHNNSIKSLALDGNG-D-LLAGTDN-GLYVYHNDTTPLQHI  266 (758)
T ss_dssp             CCEEEEEEETTTTEEEEEEEE-EEEEEETTTTEEEEEEEEEEEEEEEEEECTTC-C-EEEEETT-EEEEECCTTSCCEEE
T ss_pred             ceeEEEEEECCCCEEEEEECC-CCeEEcCCCCeEEeccCCCCCeEEEEEEcCCC-C-EEEEeCC-ceeEEecCCCcEEEE
Confidence            358888887777766656544 48889987765432111123457888776655 4 4444544 577888765432110


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccc
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS  268 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  268 (512)
                      ...                  .  ..........|.++....++...+.  +..| +.++.....-...... ..     
T Consensus       267 ~~~------------------~--~~~~~l~~~~i~~i~~D~~g~lWiG--T~~G-l~~~~~~~~~~~~~~~-~~-----  317 (758)
T 3ott_A          267 IHD------------------S--RNIQSLTNNIIWNIFADQEHNIWLG--TDYG-ISLSRYNSALQFIPIS-QI-----  317 (758)
T ss_dssp             CCC------------------T--TCTTSCSCSCEEEEEECTTCCEEEE--ESSS-EEEECCCC-CEEEEHH-HH-----
T ss_pred             EcC------------------C--CCcCcCCcCeEEEEEEcCCCCEEEE--eCCc-ccccccCCceeEEecc-cC-----
Confidence            000                  0  0000112346888887777776653  3456 5444322110000000 00     


Q ss_pred             cccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-----ceeceeEEEEEECCCCCEEEEecCCCC
Q 010390          269 AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-----CRIESFYVKSEICPNASHILSGSSDGN  343 (512)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~g~~dg~  343 (512)
                      ........|.++..+.+|.+.+ |+.+ -+..++...........+..     ......+.++.-..+|++.+ |+.+ -
T Consensus       318 ~~~~~~~~v~~i~~D~~g~lWi-Gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~~-G  393 (758)
T 3ott_A          318 TGTGDGNQFYSLFRDSKGFYWF-GGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATDG-S  393 (758)
T ss_dssp             SCSCCCCBEEEEEECTTCCEEE-EETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EETT-E
T ss_pred             CCCCCCceEEEEEEcCCCCEEE-eeCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeCC-c
Confidence            0011123588888888887554 4444 46666644321112212210     01123467777777776554 4444 5


Q ss_pred             EEEEecCCCCCCCceecc-----ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          344 AYVWQVNKPQADPIKLKS-----HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       344 i~iw~~~~~~~~~~~~~~-----h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      +..|+..+.+........     ....|.++.-..++  .|..|+..+-|.++|..
T Consensus       394 L~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~~~Gl~~~~~~  447 (758)
T 3ott_A          394 INRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTCLGGIFVVDKH  447 (758)
T ss_dssp             EEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS--EEEEEESSSCEEEEEHH
T ss_pred             HhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEECCCceEEEccc
Confidence            888988765432111111     23468888877766  45556665557777754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.66  E-value=1  Score=40.25  Aligned_cols=63  Identities=14%  Similarity=0.149  Sum_probs=32.5

Q ss_pred             cCCCEEEEEeC----CC-------cEEEEeCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCC-------CcEEE
Q 010390          118 KEDTNILTASG----DQ-------TIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRD-------GSFAI  177 (512)
Q Consensus       118 ~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~d-------g~i~v  177 (512)
                      .++..++.|+.    ++       .+.++|..+.+-..  .+......- +++.. ++ .+++.|+.+       ..+.+
T Consensus        55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DD-KIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE-TT-EEEEEEEEBTTTCCEEEEEEE
T ss_pred             ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE-CC-EEEEEcCccCCCCcccceEEE
Confidence            46777777773    12       17788887765322  222111111 22222 33 677777754       24677


Q ss_pred             EeCCCC
Q 010390          178 WDLRCK  183 (512)
Q Consensus       178 wd~~~~  183 (512)
                      ||..+.
T Consensus       132 yd~~~~  137 (318)
T 2woz_A          132 YDPVAA  137 (318)
T ss_dssp             EETTTT
T ss_pred             EeCCCC
Confidence            777644

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.44  E-value=1.4  Score=39.77  Aligned_cols=109  Identities=8%  Similarity=0.124  Sum_probs=62.4

Q ss_pred             CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccce-eccccCCCcEEEEEEecC---CCEEEEE
Q 010390           51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARI-SDWVAHQNAIFDLCWIKE---DTNILTA  126 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~s~~---~~~l~s~  126 (512)
                      ....+|+|   .|||+++++--..|.|++++..++....        ...+ ..+.........|+++|+   +..|...
T Consensus        32 ~~P~~ia~---~pdG~llVter~~G~I~~v~~~~g~~~~--------v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           32 NSPWGLAP---LPGGDLLVSSRDEATITRVDAKTGRKTE--------LGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             SSEEEEEE---CTTSCEEEEETTTCEEEEECTTTCCEEE--------EEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             CCceEEEE---cCCCcEEEEEecCCEEEEEECCCCcEee--------ecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence            34678888   9999977776558999999865442200        0000 112234578899999995   3444432


Q ss_pred             ---eCCCcEEEEeCCCC----------eee-eccc-CcCCCEEEEEeeCCCCCeEEEEeC
Q 010390          127 ---SGDQTIKIWDAEKK----------KCT-GALM-GHTGSIKSLCSHPTNSDILVSGSR  171 (512)
Q Consensus       127 ---~~dg~i~iwd~~~~----------~~~-~~~~-~h~~~v~~l~~~~~~~~~l~s~~~  171 (512)
                         ..++.|.-|.+..+          +.+ ..+. ........|.|.|++ .++++.+.
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd  159 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGE  159 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBC
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECC
Confidence               23455666655441          111 1121 111234568999988 66666553

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.35  E-value=1.5  Score=39.25  Aligned_cols=110  Identities=8%  Similarity=0.144  Sum_probs=53.1

Q ss_pred             CCCCEEEEEec------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-----CCEEEEecCCC
Q 010390          284 SNGVFLTASCM------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-----GNAYVWQVNKP  352 (512)
Q Consensus       284 ~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iw~~~~~  352 (512)
                      .++.+++.|+.      -..+.+||..+..-..+.........  ...+.  -++++++.|+.+     ..+.+||..+.
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM--FGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS--CEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc--ceEEE--ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            35666677664      24688999865332222111111111  11122  256777777653     24778888765


Q ss_pred             CCC-CceeccccCCeEEEEeCCCCCCeEEEEeCC--------------CcEEEEeCCCCcccc
Q 010390          353 QAD-PIKLKSHDGEVTAVNWCPNEAGKIVTSSDD--------------YTVRLWSLENSRCSS  400 (512)
Q Consensus       353 ~~~-~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d--------------g~i~vwd~~~~~~~~  400 (512)
                      +-. +..+.........+.+  ++ .+++.|+.+              ..+.+||+.+.+-..
T Consensus       233 ~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          233 KWEVMTEFPQERSSISLVSL--AG-SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             CEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred             eEEECCCCCCcccceEEEEE--CC-EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence            321 0111111111122222  34 677777654              356777877765443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.29  E-value=1.3  Score=39.38  Aligned_cols=140  Identities=6%  Similarity=0.062  Sum_probs=75.4

Q ss_pred             EEeecCCEEEEEe---ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec-CCeEEEEE
Q 010390          227 LYLKDEVSIATAS---AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM-DHRIYLYN  302 (512)
Q Consensus       227 ~~~~~~~~l~~~g---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d  302 (512)
                      .+++++..++.+.   ..+..|...++.......            +..+  .+  ..++++++.|+-.+. ...|.+.+
T Consensus       110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~------------lt~~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~  173 (302)
T 3s25_A          110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK------------IKNH--YL--FTCNTSDRYFYYNNPKNGQLYRYD  173 (302)
T ss_dssp             EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEE------------EESS--CC--CCSEEETTEEEEECTTTCCEEEEE
T ss_pred             EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEE------------EeCC--Cc--eEeeEECCEEEEEeCCCceEEEEE
Confidence            6778888888765   234456666665433221            1111  11  345677887776554 56788888


Q ss_pred             cccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC--CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEE
Q 010390          303 VLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD--GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIV  380 (512)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~  380 (512)
                      +.......+  +.+.   .  . ..+.|++.+|+-...+  ..|..-++.....  ..+..  ..+.  .|+|++ .+|.
T Consensus       174 l~g~~~~~l--~~~~---~--~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--~~Lt~--~~~~--~~~~~g-~~Iy  238 (302)
T 3s25_A          174 TASQSEALF--YDCN---C--Y-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--VVLTE--ANIE--HYNVYG-SLIF  238 (302)
T ss_dssp             TTTTEEEEE--ECSC---E--E-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--EECSC--SCEE--EEEEET-TEEE
T ss_pred             CCCCCEEEE--eCCC---c--c-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--EEEeC--CCcc--eEEECC-CEEE
Confidence            754332211  2211   1  1 2345888888765433  3466666655443  23332  2332  367777 5665


Q ss_pred             EEe--CCCcEEEEeCCCCc
Q 010390          381 TSS--DDYTVRLWSLENSR  397 (512)
Q Consensus       381 s~~--~dg~i~vwd~~~~~  397 (512)
                      -++  ..+.|..-+++...
T Consensus       239 ~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          239 YQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             EEECSSSCEEEEEETTSCC
T ss_pred             EEECCCCcEEEEEECCCCc
Confidence            442  34567777776544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.24  E-value=0.97  Score=41.21  Aligned_cols=54  Identities=11%  Similarity=-0.000  Sum_probs=26.1

Q ss_pred             eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC------CEEEEecCCCCC
Q 010390          297 RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG------NAYVWQVNKPQA  354 (512)
Q Consensus       297 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg------~i~iw~~~~~~~  354 (512)
                      .+.+||+.+..-..+..+.......    .+...++++++.|+.++      .|.++++++.+.
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~----~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~  345 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYG----VSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKV  345 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSS----EEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred             eEEEEecCCCceeeCCCCCCCcccc----eeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence            5778888664443333222221111    12224677778887543      355667776654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.75  E-value=4.3  Score=41.50  Aligned_cols=243  Identities=10%  Similarity=0.015  Sum_probs=129.1

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec-ccC----cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA-LMG----HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK  183 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~  183 (512)
                      ..|.++....++...+ |+.+| |..++..+++.... ...    ....|.++....++ ..|..|.. +-|..+|..+.
T Consensus       146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTT
T ss_pred             CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCC
Confidence            5688888776776544 55555 77888777654321 111    12348888877665 44444554 45778887643


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      .....                           .......|.++....++...+.  + ++-+.+++..+...........
T Consensus       222 ~~~~~---------------------------~~l~~~~i~~i~~d~~g~lWig--T-~~Gl~~~~~~~~~~~~~~~~~~  271 (758)
T 3ott_A          222 QIKQT---------------------------EAFHNNSIKSLALDGNGDLLAG--T-DNGLYVYHNDTTPLQHIIHDSR  271 (758)
T ss_dssp             EEEEE---------------------------EEEEEEEEEEEEECTTCCEEEE--E-TTEEEEECCTTSCCEEECCCTT
T ss_pred             eEEec---------------------------cCCCCCeEEEEEEcCCCCEEEE--e-CCceeEEecCCCcEEEEEcCCC
Confidence            21000                           0011235778877777776654  3 3458888877654322111000


Q ss_pred             ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-----ceeceeEEEEEECCCCCEEEEe
Q 010390          264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-----CRIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~g  338 (512)
                      .    ........|.++..+.+|.+ ..|+..| +.++...    .....+..     ......+.++....+|.+.+. 
T Consensus       272 ~----~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-  340 (758)
T 3ott_A          272 N----IQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYN----SALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-  340 (758)
T ss_dssp             C----TTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCC----C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-
T ss_pred             C----cCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccC----CceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-
Confidence            0    01122345889988888764 4454556 5444321    11111110     111234667777777775554 


Q ss_pred             cCCCCEEEEecCCCCCC-Cceec-------cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          339 SSDGNAYVWQVNKPQAD-PIKLK-------SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~-~~~~~-------~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      +.+| +..++..++... ...+.       -....|.++.-..++ .+. .|+. +-|..+|..+++...
T Consensus       341 t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lW-igt~-~GL~~~~~~~~~~~~  406 (758)
T 3ott_A          341 GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLW-IATD-GSINRYDYATRQFIH  406 (758)
T ss_dssp             ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEE-EEET-TEEEEEETTTTEEEE
T ss_pred             eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEE-EEeC-CcHhhcCcCCCcEEE
Confidence            4455 666665543211 11111       012458888887777 444 4444 468899988776543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.70  E-value=0.97  Score=37.55  Aligned_cols=101  Identities=10%  Similarity=0.079  Sum_probs=60.4

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCc--------EEEEEEecCCCEE
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA--------IFDLCWIKEDTNI  123 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------V~~l~~s~~~~~l  123 (512)
                      .+..++|   +|||.+.|+  .+|.+.-.+..+...              ..+.+-...        -.++.|.|+|.+.
T Consensus        42 ~~~~laf---~P~G~LYaV--~~G~Ly~~~~~t~~~--------------~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LY  102 (236)
T 1tl2_A           42 NFKFLFL---SPGGELYGV--LNDKIYKGTPPTHDN--------------DNWMGRAKKIGNGGWNQFQFLFFDPNGYLY  102 (236)
T ss_dssp             TCSEEEE---CTTSCEEEE--ETTEEEEESCCCSTT--------------CCHHHHCEEEECSCGGGCSEEEECTTSCEE
T ss_pred             cceeEEE---CCCccEEEE--eCCeEEEECCCCCCc--------------ccccccccEecccccccceEEEECCCCCEE
Confidence            5567777   999997777  577655555433211              011111122        3678999999877


Q ss_pred             EEEeCCCcEEEEeCCCCeeee------cc-cCcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390          124 LTASGDQTIKIWDAEKKKCTG------AL-MGHTGSIKSLCSHPTNSDILVSGSRDGSFA  176 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~------~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  176 (512)
                      ++  .||.|+-++..+.....      .+ ..--..+..|.|.|++ .+.+..  |+.+.
T Consensus       103 av--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~ly  157 (236)
T 1tl2_A          103 AV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFY  157 (236)
T ss_dssp             EE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred             Ee--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEE
Confidence            77  56999888764321111      11 1112468999999988 555554  77754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.26  E-value=3.8  Score=38.81  Aligned_cols=105  Identities=12%  Similarity=0.154  Sum_probs=59.6

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc------cCCCcEEEEEEecC---CCE
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV------AHQNAIFDLCWIKE---DTN  122 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~s~~---~~~  122 (512)
                      ...+|+|   .|+|+++++-...+.|++++..++..           ..+..+.      ...+....|+|+|+   +..
T Consensus        28 ~P~~~a~---~pdG~l~V~e~~gg~I~~~~~~~g~~-----------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~   93 (454)
T 1cru_A           28 KPHALLW---GPDNQIWLTERATGKILRVNPESGSV-----------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY   93 (454)
T ss_dssp             SEEEEEE---CTTSCEEEEETTTCEEEEECTTTCCE-----------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred             CceEEEE---cCCCcEEEEEcCCCEEEEEECCCCcE-----------eEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence            4568888   99999777654445788887644321           1111111      13567899999995   555


Q ss_pred             EEEEeC-------------CCcEEEEeCCCC-------eeee-ccc-CcCCCEEEEEeeCCCCCeEEEEeC
Q 010390          123 ILTASG-------------DQTIKIWDAEKK-------KCTG-ALM-GHTGSIKSLCSHPTNSDILVSGSR  171 (512)
Q Consensus       123 l~s~~~-------------dg~i~iwd~~~~-------~~~~-~~~-~h~~~v~~l~~~~~~~~~l~s~~~  171 (512)
                      |..+..             ...|.-+++..+       +.+. .+. ........|+|.|++ .++++.+.
T Consensus        94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd  163 (454)
T 1cru_A           94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGD  163 (454)
T ss_dssp             EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECC
T ss_pred             EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECC
Confidence            554332             134555554321       1111 121 112347889999998 66666554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.67  E-value=4.2  Score=41.04  Aligned_cols=107  Identities=11%  Similarity=0.198  Sum_probs=56.9

Q ss_pred             CCCcEEEEeeCC----CcEEEEECCCCCCcccccccccccccee-c-----cccCCCcEEEEEEec-CCCEEEEEeCC--
Q 010390           63 KNSHIFAVSDED----GYVSLFDSRRKLPSFACHRENAEKARIS-D-----WVAHQNAIFDLCWIK-EDTNILTASGD--  129 (512)
Q Consensus        63 ~~~~~latg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~-----~~~h~~~V~~l~~s~-~~~~l~s~~~d--  129 (512)
                      .++.+++.|+.+    ..+.+||..+..-..           +. .     ....... .+++..+ ++..++.|+.+  
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~-----------~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~  463 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDM-----------KNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAP  463 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEE-----------EECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSST
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEE-----------eccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCC
Confidence            467788888754    358888876653211           11 0     0100111 2233333 67777777754  


Q ss_pred             ----CcEEEEeCCCCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCC
Q 010390          130 ----QTIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCK  183 (512)
Q Consensus       130 ----g~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~  183 (512)
                          ..+.+||..+.+-.  ..+......- +++...++ .+++.|+.++  .+.+||..+.
T Consensus       464 ~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~  523 (695)
T 2zwa_A          464 HQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDG-NVLILGGVTEGPAMLLYNVTEE  523 (695)
T ss_dssp             TCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTS-CEEEECCBCSSCSEEEEETTTT
T ss_pred             CCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCC-EEEEECCCCCCCCEEEEECCCC
Confidence                35788998875432  2222111111 22222244 7888887655  6888888754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.33  E-value=6.3  Score=35.69  Aligned_cols=23  Identities=4%  Similarity=0.260  Sum_probs=16.3

Q ss_pred             CCcEEEEeeC-C---------CcEEEEECCCCC
Q 010390           64 NSHIFAVSDE-D---------GYVSLFDSRRKL   86 (512)
Q Consensus        64 ~~~~latg~~-d---------g~i~iwd~~~~~   86 (512)
                      ++++++.|+. +         ..+.+||..+..
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            6778888776 2         468889887653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.43  E-value=8.5  Score=38.77  Aligned_cols=116  Identities=5%  Similarity=-0.029  Sum_probs=57.0

Q ss_pred             cCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEec--C-----CeEEE
Q 010390          231 DEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCM--D-----HRIYL  300 (512)
Q Consensus       231 ~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~--d-----g~i~i  300 (512)
                      ++..++. |+.++  .+.+||..+..-.....  ..    ..........++.+..+ +.+++.|+.  +     +.+.+
T Consensus       500 ~~~iyv~-GG~~~~~~v~~yd~~t~~W~~~~~--~g----~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~  572 (695)
T 2zwa_A          500 DGNVLIL-GGVTEGPAMLLYNVTEEIFKDVTP--KD----EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAII  572 (695)
T ss_dssp             TSCEEEE-CCBCSSCSEEEEETTTTEEEECCC--SS----GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEE
T ss_pred             CCEEEEE-CCCCCCCCEEEEECCCCceEEccC--CC----CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEE
Confidence            5555555 44443  68999988765332211  00    01111122233555554 667777765  2     46889


Q ss_pred             EEcccCCCCc---eEeeeece-eceeEEEEEECCCCCEEEEecC--------CCCEEEEecCCCC
Q 010390          301 YNVLQLDKGP---IQHFSGCR-IESFYVKSEICPNASHILSGSS--------DGNAYVWQVNKPQ  353 (512)
Q Consensus       301 ~d~~~~~~~~---~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~--------dg~i~iw~~~~~~  353 (512)
                      ||+.+.....   ...+.... ....-..++...++++++.|+.        ...|.+||..+..
T Consensus       573 yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          573 FKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            9987654100   11111110 1111111222233677777774        2458889887653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=88.85  E-value=13  Score=33.41  Aligned_cols=63  Identities=8%  Similarity=0.075  Sum_probs=40.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCc-CCCEEEEEe--eCCCCCeEEEE-eCCCcEEEEeCCCC
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGH-TGSIKSLCS--HPTNSDILVSG-SRDGSFAIWDLRCK  183 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~--~~~~~~~l~s~-~~dg~i~vwd~~~~  183 (512)
                      ..++.++.||.|.-.|..+|+....+... ..++....-  .+.++..++.. ..||.|..++..++
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G   77 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG   77 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC
Confidence            46788999999999999999988887643 122222110  01121333333 57999999998765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.38  E-value=0.96  Score=43.27  Aligned_cols=85  Identities=11%  Similarity=0.040  Sum_probs=57.2

Q ss_pred             ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC-CCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390          221 MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW-PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY  299 (512)
Q Consensus       221 ~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  299 (512)
                      .....+..+|||++++++|-.+.++.++|++.......... ..............+....+|+++|....+...|..|.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            34556888999999999999999999999986443221110 00000001112234577899999996666666899999


Q ss_pred             EEEccc
Q 010390          300 LYNVLQ  305 (512)
Q Consensus       300 i~d~~~  305 (512)
                      -|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999854

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.55  E-value=12  Score=35.46  Aligned_cols=119  Identities=13%  Similarity=0.039  Sum_probs=60.7

Q ss_pred             ccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceec-ccCCCccccccccccccCeeEEEeCCC----CCEEEEEec
Q 010390          221 MSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQIT-QAWPHAESSSAKETRLHGISSLSQDSN----GVFLTASCM  294 (512)
Q Consensus       221 ~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~  294 (512)
                      ...+.|+|.|++. .++++ ...|.|++++......... ...+.................|+++|+    +.+.++-+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            3678999999996 44443 3789999997543211000 000000000000112456889999996    433333222


Q ss_pred             --C----------CeEEEEEcccCC--------CCceEeeeeceeceeEEEEEECCCCCEEEEecC
Q 010390          295 --D----------HRIYLYNVLQLD--------KGPIQHFSGCRIESFYVKSEICPNASHILSGSS  340 (512)
Q Consensus       295 --d----------g~i~i~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~  340 (512)
                        +          ..|.-|.+....        ...+..+...........++|.|||.+.++.++
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence              1          145556654311        112222221122334567999999987776554

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=86.82  E-value=18  Score=32.96  Aligned_cols=162  Identities=10%  Similarity=-0.014  Sum_probs=85.3

Q ss_pred             ccEEEEEEe---ec----CCEEEEEeecCCeEEEEeccCccceeccc---CCCccccccccc----cccCeeEEEeCCC-
Q 010390          221 MSITSVLYL---KD----EVSIATASAVNSIVKFWDTRNLKAQITQA---WPHAESSSAKET----RLHGISSLSQDSN-  285 (512)
Q Consensus       221 ~~v~~~~~~---~~----~~~l~~~g~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~----~~~~i~~~~~~~~-  285 (512)
                      ..+..+.+.   +.    +.++.++-.....|.++|+.+++.-....   .+.........+    -..++..|+++|+ 
T Consensus       152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~  231 (381)
T 3q6k_A          152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD  231 (381)
T ss_dssp             GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred             CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence            456777776   21    34444444456789999999876544321   111000000111    1357999999998 


Q ss_pred             ---CCEEEEEecCC-eEEEEEc---ccCCCCceEeeeecee-ceeEEEEEEC-CCCCEEEEecCCCCEEEEecCC-CC--
Q 010390          286 ---GVFLTASCMDH-RIYLYNV---LQLDKGPIQHFSGCRI-ESFYVKSEIC-PNASHILSGSSDGNAYVWQVNK-PQ--  353 (512)
Q Consensus       286 ---~~~l~~~~~dg-~i~i~d~---~~~~~~~~~~~~~~~~-~~~~~~~~~s-~~~~~l~~g~~dg~i~iw~~~~-~~--  353 (512)
                         ++.|+-....+ .+.-...   ++..........+... ......++++ .+|.++++--..+.|..|+..+ .-  
T Consensus       232 ~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~  311 (381)
T 3q6k_A          232 SEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRM  311 (381)
T ss_dssp             TTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCG
T ss_pred             CCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCcccc
Confidence               77777766554 4444442   2211111111222221 1223446775 6788778877888899999875 21  


Q ss_pred             CCCceec--cccCCeEEEEeCCCCCCeEEEEe
Q 010390          354 ADPIKLK--SHDGEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       354 ~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~  383 (512)
                      .....+.  ..-..+.++.+..++ .+.+..+
T Consensus       312 ~n~~~l~~d~~l~~pd~~~i~~~g-~Lwv~sn  342 (381)
T 3q6k_A          312 KNTDVVYTSSRFVFGTDISVDSKG-GLWFMSN  342 (381)
T ss_dssp             GGEEEEEECTTCCSEEEEEECTTS-CEEEEEC
T ss_pred             CceEEEEECCCccccCeEEECCCC-eEEEEEC
Confidence            1011111  111246777776666 4444443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.46  E-value=10  Score=39.83  Aligned_cols=38  Identities=18%  Similarity=0.403  Sum_probs=33.3

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecc
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL  146 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  146 (512)
                      ..+.+++..++..++++-+.|+++|||++.+++++.+.
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            46788888888899999999999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	512
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-18
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-17
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.004
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.2 bits (222), Expect = 2e-20
 Identities = 54/308 (17%), Positives = 105/308 (34%), Gaps = 28/308 (9%)

Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H++ +  + +    + +++AS D TIK+WD E       L GHT S++ +    +   +
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 166 LVSGSRDGSFAIW-DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT 224
               +                       +    S +  G H++S S+  + +     +  
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 225 SVLYL-------------KDEVSIATASAVNSIVKFW--------DTRNLKAQITQAWPH 263
            V                +D   IA+ S   ++  +         + R  +  +      
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 194

Query: 264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFY 323
            ESS +  +   G  +      G FL +   D  I +++        +    G       
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD--VSTGMCLMTLVGHDNWVRG 252

Query: 324 VKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS 383
           V          ILS + D    VW     +     L +H+  VT++++       +VT S
Sbjct: 253 VL--FHSGGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTA-PYVVTGS 308

Query: 384 DDYTVRLW 391
            D TV++W
Sbjct: 309 VDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (172), Expect = 4e-14
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 14/124 (11%)

Query: 56  VSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC 115
               K+ K          D  + ++D    +              +   V H N +  + 
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-------------LMTLVGHDNWVRGVL 254

Query: 116 WIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSF 175
           +      IL+ + D+T+++WD + K+C   L  H   + SL  H   +  +V+GS D + 
Sbjct: 255 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTV 313

Query: 176 AIWD 179
            +W+
Sbjct: 314 KVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (153), Expect = 1e-11
 Identities = 33/199 (16%), Positives = 67/199 (33%), Gaps = 36/199 (18%)

Query: 58  FCKTSKNSHIFAVSDEDGYVSLFD--SRRKLPSFACHRENAEKARISDW-----VAHQNA 110
             + +++  + A    D  V ++   ++        HR   E    +       ++    
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 207

Query: 111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS 170
                  K    +L+ S D+TIK+WD     C   L+GH   ++ +  H      ++S +
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCA 266

Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
            D +  +WD +                             + +    A    +TS+ + K
Sbjct: 267 DDKTLRVWDYK---------------------------NKRCMKTLNAHEHFVTSLDFHK 299

Query: 231 DEVSIATASAVNSIVKFWD 249
               + T S  +  VK W+
Sbjct: 300 TAPYVVTGSV-DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.2 bits (152), Expect = 1e-11
 Identities = 46/285 (16%), Positives = 88/285 (30%), Gaps = 23/285 (8%)

Query: 133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS---- 188
           K W   +     AL GH   +  +  HP    ++VS S D +  +WD       ++    
Sbjct: 1   KEWI-PRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGH 58

Query: 189 -NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKF 247
            +  +   F  +    A   +              I ++      VS  +       +  
Sbjct: 59  TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 248 WDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD 307
                          +   +         +   +QD   +   ++    R+++    +  
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 308 KGPIQHFSGCRIESFYVKSE--------------ICPNASHILSGSSDGNAYVWQVNKPQ 353
               +H       S+  +S                      +LSGS D    +W V+   
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 354 ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398
              + L  HD  V  V +       I++ +DD T+R+W  +N RC
Sbjct: 239 C-LMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRC 281

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 7e-11
 Identities = 41/323 (12%), Positives = 100/323 (30%), Gaps = 53/323 (16%)

Query: 55  AVSFCKTSKNSHIFAVSDEDGYVSLFD--SRRKLPSFACHRE------------------ 94
            V+         +   + ED  + ++D  +     +   H +                  
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78

Query: 95  ---------NAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA 145
                          I     H + +  +  +    +I++AS D+TIK+W+ +   C   
Sbjct: 79  ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT 138

Query: 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205
             GH   ++ +  +  +  ++ S S D +  +W +  K           V          
Sbjct: 139 FTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC------- 190

Query: 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265
            +S +   S    +  + +             + + +  +K WD       +T       
Sbjct: 191 -ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT------- 242

Query: 266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVK 325
                    + +  +   S G F+ +   D  + +++    +K  ++  +        + 
Sbjct: 243 ----LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK--NKRCMKTLNAHEHFVTSLD 296

Query: 326 SEICPNASHILSGSSDGNAYVWQ 348
                 A ++++GS D    VW+
Sbjct: 297 --FHKTAPYVVTGSVDQTVKVWE 317

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 82.3 bits (201), Expect = 5e-18
 Identities = 45/291 (15%), Positives = 88/291 (30%), Gaps = 8/291 (2%)

Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDI 165
           H  AI  L    +   + +A  +  I  WD             H   I  + +       
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--D 68

Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
           L + S D    +          S    + + S  +             +  K  ++    
Sbjct: 69  LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128

Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285
            L        ++  A+++  +F       +++        S S  +T +H     S   +
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188

Query: 286 GVFLTASCMDHRIYLY-NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344
                    D    +    +  +       S     +        P+   + +GS D + 
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 248

Query: 345 YVWQVNKPQADPIKLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
            VW +NKP   PI +K       V +V W       IV++  D  ++ W++
Sbjct: 249 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.0 bits (117), Expect = 3e-07
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 80  FDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK 139
              + +         N E A  + W  H   +  + W  ++  + T S D ++ +W+  K
Sbjct: 196 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 255

Query: 140 KKCTGALM---GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
                 ++       S+ S+         +VS  +D +   W++
Sbjct: 256 PSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 2e-06
 Identities = 25/260 (9%), Positives = 61/260 (23%), Gaps = 6/260 (2%)

Query: 141 KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK--SNCAESFVFSS 198
                  GH  +I +L S   +   L S   +G    WD+    S +   +   + +   
Sbjct: 3   SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258
                  L + S     +    +          +      S+    +      ++     
Sbjct: 62  KTTSKGDLFTVSWDDHLKV---VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

Query: 259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR 318
                  S           +S     +      +       ++          +  +   
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178

Query: 319 IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGK 378
                  +     A  + +  S         N  +       +      A      +  +
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 379 IVTSSDDYTVRLWSLENSRC 398
           + T S D +V +W++     
Sbjct: 239 LATGSLDNSVIVWNMNKPSD 258

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 9e-04
 Identities = 43/315 (13%), Positives = 93/315 (29%), Gaps = 22/315 (6%)

Query: 39  IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEK 98
           +G++    +G      A+S    S +      +D +G+++ +D    + +          
Sbjct: 1   LGSIDQVRYGHNKAITALSS---SADGKTLFSADAEGHINSWDISTGISNRVFPD----- 52

Query: 99  ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK---CTGALMGHTGSIKS 155
                   H   I  +       ++ T S D  +K+  A               +     
Sbjct: 53  -------VHATMITGIKTTS-KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 104

Query: 156 LCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR 215
           L         + +  +  +        +     N +   + +               V +
Sbjct: 105 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK 164

Query: 216 RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275
              AS+S    +    E++    S   + +   D        + A     + +   T   
Sbjct: 165 LSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT 224

Query: 276 GISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH 334
              +    S      A+  +D+ + ++N+ +    PI       + S  V S I  N + 
Sbjct: 225 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS--VNSVIWLNETT 282

Query: 335 ILSGSSDGNAYVWQV 349
           I+S   D N   W V
Sbjct: 283 IVSAGQDSNIKFWNV 297

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.8 bits (192), Expect = 8e-17
 Identities = 42/294 (14%), Positives = 88/294 (29%), Gaps = 26/294 (8%)

Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H   I  L        +++ S D  I  W +           H+  I SL +       
Sbjct: 11  GHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKAQEYS 61

Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
            +S                S     + +    +AV+        +         S +   
Sbjct: 62  SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL--------TNDDDLLILQSFTGDI 113

Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285
           +  ++     +  S   + V          Q+ +      S   K       S +S   +
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173

Query: 286 GVFLTASCMDHRIYLYNV-------LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG 338
             ++ A  +  +I LY++        +      +  +     +    +E       + +G
Sbjct: 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233

Query: 339 SSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
           S D N +++ V +P      L +H   V  + W       +V+S  D  ++ W+
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP--STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 1e-08
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 3/94 (3%)

Query: 87  PSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK-KKCTGA 145
                 R     ++I+                E+  + T S D  I I+  ++  K   A
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 253

Query: 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
           L  H   + +L     ++  LVS   D     W+
Sbjct: 254 LNAHKDGVNNLLWETPST--LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 8e-06
 Identities = 32/256 (12%), Positives = 64/256 (25%), Gaps = 12/256 (4%)

Query: 141 KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200
           +    + GH   I +L  +P     L+SGS DG    W         SN     + S   
Sbjct: 4   EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSN----LIVSLDN 54

Query: 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA 260
            K     S S   + +             K   +                          
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIE 320
                +S      L           G  +    +      +++    +    + S    E
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174

Query: 321 SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIV 380
           ++    ++          S +     W     + + I  K  +          +    + 
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED---LVA 231

Query: 381 TSSDDYTVRLWSLENS 396
           T S D  + ++S++  
Sbjct: 232 TGSLDTNIFIYSVKRP 247

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)

Query: 359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399
           +  H+  +TA+   P     +++ S D  +  WS  +    
Sbjct: 9   ISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 7e-16
 Identities = 52/300 (17%), Positives = 93/300 (31%), Gaps = 22/300 (7%)

Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH 159
           RI         ++ L +  +D  I++   D TIKIWD    +C   L GHTGS+  L   
Sbjct: 7   RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64

Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
                   S S    + +      ++   +C                           A+
Sbjct: 65  ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279
              IT    L    +       +       + +   +  + W  +     +    H    
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD---RTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339
                    + +   D+ I L+++       ++   G       +   I  +   I+SG+
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIE--CGACLRVLEGH----EELVRCIRFDNKRIVSGA 235

Query: 340 SDGNAYVWQVNKPQADPIK--------LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
            DG   VW +                 L  H G V  + +      +IV+SS D T+ +W
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 34/268 (12%), Positives = 90/268 (33%), Gaps = 10/268 (3%)

Query: 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205
           +   + + K +     +   +VSG RD +  IWD       +     +            
Sbjct: 8   IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

Query: 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265
           +++ S   + R     +   +  L            N+ +    +++    +       +
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVK 325
            +  +    H  +    D +  ++ ++  D  I ++N    +   ++  +G +       
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIAC-- 183

Query: 326 SEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD 385
             +      ++SGSSD    +W +         L+  +G    V     +  +IV+ + D
Sbjct: 184 --LQYRDRLVVSGSSDNTIRLWDIECGA----CLRVLEGHEELVRCIRFDNKRIVSGAYD 237

Query: 386 YTVRLWSLENSRCSSMRSPSSVRRRVMA 413
             +++W L  +      + +   R ++ 
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVE 265

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 28/157 (17%)

Query: 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174
               +D  I++ASGD+TIK+W+    +    L GH   I           ++VSGS D +
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI---ACLQYRDRLVVSGSSDNT 199

Query: 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS----------------------QSKR 212
             +WD+ C +  +       +          ++S                       +  
Sbjct: 200 IRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259

Query: 213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWD 249
           +      S  +  + +  DE  I ++S  ++I   WD
Sbjct: 260 LRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI-LIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 58  FCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI 117
                 ++        DG + ++D    L +    R  A    +   V H   +F L + 
Sbjct: 221 VRCIRFDNKRIVSGAYDGKIKVWD----LVAALDPRAPAGTLCLRTLVEHSGRVFRLQF- 275

Query: 118 KEDTNILTASGDQTIKIWD 136
            ++  I+++S D TI IWD
Sbjct: 276 -DEFQIVSSSHDDTILIWD 293

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 2e-15
 Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 12/125 (9%)

Query: 55  AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDL 114
            ++      N + FA   +D    LFD R                           I  +
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-----------HDNIICGITSV 276

Query: 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174
            + K    +L    D    +WDA K    G L GH   +  L     +   + +GS D  
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSF 335

Query: 175 FAIWD 179
             IW+
Sbjct: 336 LKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.0 bits (180), Expect = 5e-15
 Identities = 39/291 (13%), Positives = 88/291 (30%), Gaps = 9/291 (3%)

Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDIL 166
           H   I+ + W  +   +++AS D  + IWD+       A+   +  + +    P+ + + 
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113

Query: 167 VSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSV 226
             G  +          + + + +   +              +Q    S     ++     
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173

Query: 227 LYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA---WPHAESSSAKETRLH--GISSLS 281
                  +  T   ++  +       +      +   W   E    +    H   I+++ 
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233

Query: 282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD 341
              NG        D    L+++    +               V      +   +L+G  D
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS--FSKSGRLLLAGYDD 291

Query: 342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392
            N  VW   K       L  HD  V+ +    +    + T S D  +++W+
Sbjct: 292 FNCNVWDALKADR-AGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.7 bits (148), Expect = 5e-11
 Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 19/163 (11%)

Query: 104 WVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS 163
           +  H   +  L    +    ++ + D + K+WD  +  C     GH   I ++C  P N 
Sbjct: 180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NG 238

Query: 164 DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK----GAHLLSQS--------- 210
           +   +GS D +  ++DLR      +   ++ +     V     G  LL+           
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298

Query: 211 ----KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWD 249
                R          ++ +    D +++AT S  +S +K W+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 43/299 (14%), Positives = 94/299 (31%), Gaps = 17/299 (5%)

Query: 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILV 167
           +N I D      D  +   + +         + + T  L GH   I ++     +S +LV
Sbjct: 15  KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRT--LRGHLAKIYAMHWGT-DSRLLV 71

Query: 168 SGSRDGSFAIWDLRCKSSPKS-NCAESFVFSSAVVKGAHLLSQ-----SKRVSRRKAASM 221
           S S+DG   IWD    +   +     S+V + A     + ++         +   K    
Sbjct: 72  SASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131

Query: 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281
           ++     L       +        +   +              + ++        + SLS
Sbjct: 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLS 191

Query: 282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKS-EICPNASHILSGSS 340
              +     +   D    L++V   +    Q F+G       + +    PN +   +GS 
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVR--EGMCRQTFTG---HESDINAICFFPNGNAFATGSD 246

Query: 341 DGNAYV-WQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398
           D    +       +       +    +T+V++  +    ++   DD+   +W    +  
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADR 304

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 32/297 (10%), Positives = 77/297 (25%), Gaps = 18/297 (6%)

Query: 55  AVSFCKTSKNSHIFAVSDEDGYVSLFD--SRRKLPSFACHRENAEKARISDWVAHQNAIF 112
            +       +S +   + +DG + ++D  +  K+ +             +    +     
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116

Query: 113 DLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD 172
                            +  +         +         I +     T +   +   + 
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176

Query: 173 GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL--LSQSKRVSRRKAASMSITSVLYLK 230
            +          S           S A    A L  + +             I ++ +  
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290
           +  + AT S   +   F    + +                     GI+S+S   +G  L 
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNII----------CGITSVSFSKSGRLLL 286

Query: 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW 347
           A   D    +++ L+ D       +G       +   +  +   + +GS D    +W
Sbjct: 287 AGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLG--VTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 13/91 (14%)

Query: 46  HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV 105
            +  +     ++    SK+  +     +D   +++D+              +  R     
Sbjct: 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL-------------KADRAGVLA 309

Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWD 136
            H N +  L    +   + T S D  +KIW+
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 40/296 (13%), Positives = 83/296 (28%), Gaps = 19/296 (6%)

Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL-----MGHTGSIKSLCSHPT 161
           H   +  +      T  +   G   +K+WD         +     +     I+S    P 
Sbjct: 50  HGEVVCAVTISN-PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP- 107

Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPK----SNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217
           +   L+ G    + +IWDL   +       ++ A +    +         S     +   
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277
               + T V   +     A+   +++      T  L   +            +      I
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
            SL     G +L        + + +V +        +     ES  +  +        +S
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNK-----PDKYQLHLHESCVLSLKFAYCGKWFVS 282

Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
              D     W+        I        V + +   ++   IVT S D    ++ +
Sbjct: 283 TGKDNLLNAWRTPYGA--SIFQSKESSSVLSCDISVDD-KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 104 WVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS 163
              H++ +  L +       ++   D  +  W              + S+ S      + 
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISV-DD 318

Query: 164 DILVSGSRDGSFAIWDL 180
             +V+GS D    ++++
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 21/278 (7%), Positives = 73/278 (26%), Gaps = 7/278 (2%)

Query: 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183
           +    D  I        +    L  H   + ++      +  + +G   G   +WD+   
Sbjct: 26  VPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHP 82

Query: 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRV---SRRKAASMSITSVLYLKDEVSIATASA 240
            +         +     ++   LL     +         S+   +    + +  + +++ 
Sbjct: 83  GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142

Query: 241 VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYL 300
               +       +          A      +T +      +  ++ + ++          
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360
            +         +     + +       +    +         ++ V  ++  + D  +L 
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262

Query: 361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398
            H+  V ++ +        V++  D  +  W       
Sbjct: 263 LHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGAS 299

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 14/78 (17%)

Query: 59  CKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK 118
            K +     F  + +D  ++ +      P  A   +              +++       
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWR----TPYGASIFQ----------SKESSSVLSCDISV 316

Query: 119 EDTNILTASGDQTIKIWD 136
           +D  I+T SGD+   +++
Sbjct: 317 DDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 35/298 (11%), Positives = 74/298 (24%), Gaps = 18/298 (6%)

Query: 55  AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDL 114
            V     S  +         G V ++D          H  N       D +   N I   
Sbjct: 53  VVCAVTISNPTRHVYTGG-KGCVKVWD--------ISHPGNKSPVSQLDCLNRDNYIRSC 103

Query: 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174
             +  D   L   G+ +                  T S  +  +   + D  V  S    
Sbjct: 104 KLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162

Query: 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK---D 231
             I      +       +     ++ +  ++  ++                        D
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD 222

Query: 232 EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTA 291
             S   +       ++       + +     +             + SL     G +  +
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS 282

Query: 292 SCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQV 349
           +  D+ +  +       G     S           +I  +  +I++GS D  A V++V
Sbjct: 283 TGKDNLLNAWRT---PYGASIFQSKESSSVLSC--DISVDDKYIVTGSGDKKATVYEV 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.8 bits (182), Expect = 4e-15
 Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 55  AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDL 114
           +V     +++         D  V L++  +   + +  +          ++ H++ +  +
Sbjct: 256 SVYSVVFTRDGQSVVSGSLDRSVKLWN-LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314

Query: 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT-----NSDILVSG 169
              + D  IL+ S D+ +  WD +       L GH  S+ S+            ++  +G
Sbjct: 315 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374

Query: 170 SRDGSFAIWDLR 181
           S D    IW  +
Sbjct: 375 SGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 4e-13
 Identities = 55/394 (13%), Positives = 107/394 (27%), Gaps = 65/394 (16%)

Query: 47  HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVA 106
           H +  PP  +                 D Y+    +  +      H+           + 
Sbjct: 12  HSKPIPPFLLDLDS-QSVPDALKKQTNDYYILYNPALPREIDVELHK----------SLD 60

Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC------------------TGALMG 148
           H + +  + +   D   L    ++T +++                         T +   
Sbjct: 61  HTSVVCCVKFSN-DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119

Query: 149 HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL-- 206
               I+S+C  P +   L +G+ D    IWD+  +              S     +    
Sbjct: 120 SDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 207 -------------LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL 253
                        L   +            T  +   D   IA  S  +  V+ WD+   
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL-DRAVRVWDSETG 237

Query: 254 KAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDK----- 308
                    +   +  K      + S+    +G  + +  +D  + L+N+   +      
Sbjct: 238 FLVERLDSENESGTGHK----DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293

Query: 309 ---GPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGE 365
                    +    + F +      N  +ILSGS D     W         + L+ H   
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNS 352

Query: 366 VTAVNWCPNEA-----GKIVTSSDDYTVRLWSLE 394
           V +V      +         T S D   R+W  +
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 50/324 (15%), Positives = 110/324 (33%), Gaps = 31/324 (9%)

Query: 33  VTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVS-DEDGYVSLFDSRRKLPSFAC 91
           V+D + +  ++ +    + P    +    S + +I +V    DG      +  +L     
Sbjct: 90  VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149

Query: 92  HRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTG 151
                    +     H+  I+ L +      +++ SGD+T++IWD    +C+  L    G
Sbjct: 150 IENRK---IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 206

Query: 152 SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK 211
                   P +   + +GS D +  +WD       +   +E+   +              
Sbjct: 207 VTTV-AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT-------------- 251

Query: 212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE 271
                     S+ SV++ +D  S+ + S   S+  +          ++            
Sbjct: 252 ------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIE----SFYVKSE 327
                + S++   N  ++ +   D  +  ++       P+    G R      +    S 
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK--SGNPLLMLQGHRNSVISVAVANGSS 363

Query: 328 ICPNASHILSGSSDGNAYVWQVNK 351
           + P  +   +GS D  A +W+  K
Sbjct: 364 LGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 43/310 (13%), Positives = 84/310 (27%), Gaps = 29/310 (9%)

Query: 155 SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV------KGAHLLS 208
            L     +    +    +  + +++            +S   +S V        G +L +
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79

Query: 209 QS------------KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWD-TRNLKA 255
                           V+R    S +      L    S ++   + S+    D       
Sbjct: 80  GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139

Query: 256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS 315
              +     +  + K   +         S   F +   +        V   D    Q   
Sbjct: 140 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 199

Query: 316 GCRIESFYVKSEICPNASH-ILSGSSDGNAYVWQVN------KPQADPIKLKSHDGEVTA 368
              IE       + P     I +GS D    VW         +  ++      H   V +
Sbjct: 200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259

Query: 369 VNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR--SPSSVRRRVMAIPSTECRKLFMNG 426
           V +  +    +V+ S D +V+LW+L+N+   S      S                +    
Sbjct: 260 VVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318

Query: 427 EPGWLAKGSD 436
              ++  GS 
Sbjct: 319 NDEYILSGSK 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.9 bits (182), Expect = 4e-15
 Identities = 27/327 (8%), Positives = 83/327 (25%), Gaps = 49/327 (14%)

Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL------------MGHTGSI 153
           AH   IF +     ++  ++ SGD  +K+WD +                    + H   +
Sbjct: 12  AHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 154 KSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRV 213
           +++        ++ + S  G    + +  +              +  V    L      +
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITRED------------ETKKVIFEKLDLLDSDM 117

Query: 214 SRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW------DTRNLKAQITQAWPHAESS 267
            +    ++   +         +       +   +       ++ +L    +       + 
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE 327
            +  T     +S+     G+  T                     +        S  ++S 
Sbjct: 178 ESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237

Query: 328 ICPNASHI-LSGSSDGNAYVWQV---------------NKPQADPIKLKSHDGEVTAVNW 371
                  +        +     +                      +   +H   V ++++
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297

Query: 372 CPNEAGKIVTSSDDYTVRLWSLENSRC 398
             +    + ++  D  +R W ++    
Sbjct: 298 NDSG-ETLCSAGWDGKLRFWDVKTKER 323

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 9e-06
 Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 6/129 (4%)

Query: 56  VSFCKTSKNSHIFAVSDEDGYVSL---FDSRRKLPSFACHRENAEKARISDWVAHQNAIF 112
           +   K S    + A++ +         +++       +               AH + + 
Sbjct: 234 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293

Query: 113 DLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD 172
            L +      + +A  D  ++ WD + K+    L  H   I+         +    G   
Sbjct: 294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE---HGDSL 350

Query: 173 GSFAIWDLR 181
               ++D++
Sbjct: 351 AEPGVFDVK 359

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 11/84 (13%)

Query: 328 ICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS-----------HDGEVTAVNWCPNEA 376
           +    S  +S S DG   VW       +  K KS           H   + A+     E 
Sbjct: 20  VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79

Query: 377 GKIVTSSDDYTVRLWSLENSRCSS 400
             + T+S    +  + +     + 
Sbjct: 80  CLVATTSFSGDLLFYRITREDETK 103

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 10/56 (17%)

Query: 345 YVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400
           ++   N  +A       HD ++ +V+ C +     V+ S D  +++W  +     +
Sbjct: 3   FIATANAGKA-------HDADIFSVSACNS---FTVSCSGDGYLKVWDNKLLDNEN 48

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 1e-14
 Identities = 54/293 (18%), Positives = 98/293 (33%), Gaps = 14/293 (4%)

Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
            H + +   C       I++ S D T+K+W A   KC   L+GHTG + S      N  I
Sbjct: 14  GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD-NIII 71

Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
             S  R       +             +        K     S+   +      +     
Sbjct: 72  SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH 131

Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285
           VL                +V       +K    +      +        H     S   +
Sbjct: 132 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG-----HTNRVYSLQFD 186

Query: 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAY 345
           G+ + +  +D  I +++V   +   I   +G +     + S +    + ++SG++D    
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGN--CIHTLTGHQ----SLTSGMELKDNILVSGNADSTVK 240

Query: 346 VWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398
           +W +   Q     L+  +   +AV         ++TSSDD TV+LW L+    
Sbjct: 241 IWDIKTGQ-CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 7e-12
 Identities = 36/299 (12%), Positives = 88/299 (29%), Gaps = 19/299 (6%)

Query: 135 WDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194
           W   + K    L GH   + +        + +VSGS D +  +W           C  + 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAV-----TGKCLRTL 53

Query: 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK 254
           V  +  V  + +                  +             S V  +          
Sbjct: 54  VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 113

Query: 255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVF--LTASCMDHRIYLYNVLQLDKGPIQ 312
           ++          +      L G  +  +        + +   D  + +++     +  + 
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET--ETCLH 171

Query: 313 HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC 372
              G     +     +  +  H++SGS D +  VW V         + +  G  +  +  
Sbjct: 172 TLQGHTNRVYS----LQFDGIHVVSGSLDTSIRVWDVETGN----CIHTLTGHQSLTSGM 223

Query: 373 PNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWL 431
             +   +V+ + D TV++W ++  +C       +  +  +         +  + + G +
Sbjct: 224 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 2e-07
 Identities = 38/311 (12%), Positives = 90/311 (28%), Gaps = 58/311 (18%)

Query: 91  CHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHT 150
             +    +        + +     C    +  +++ S D T+++WD E  +C   LMGH 
Sbjct: 78  TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137

Query: 151 GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS 210
            ++        +   +VSG+ D    +WD   ++   +    +    S    G H++S S
Sbjct: 138 AAV---RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGS 194

Query: 211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270
                                          ++ ++ WD        T     + +S   
Sbjct: 195 L------------------------------DTSIRVWDVETGNCIHTLTGHQSLTSGM- 223

Query: 271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP 330
                       +     L +   D  + ++++                 +         
Sbjct: 224 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ---F 268

Query: 331 NASHILSGSSDGNAYVWQVNKPQA----DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY 386
           N + +++ S DG   +W +   +       ++     G V  +     +       S + 
Sbjct: 269 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNG 327

Query: 387 T----VRLWSL 393
           T    + +   
Sbjct: 328 TEETKLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 43/255 (16%), Positives = 78/255 (30%), Gaps = 52/255 (20%)

Query: 104 WVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS 163
            V   +     C   +   +++ + D  +K+WD E + C   L GHT  +    S   + 
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV---YSLQFDG 187

Query: 164 DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI 223
             +VSGS D S  +WD+   +   +      + S   +K   L+S               
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVS--------------- 232

Query: 224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283
                             +S VK WD +  +   T   P+           H  +     
Sbjct: 233 ---------------GNADSTVKIWDIKTGQCLQTLQGPNK----------HQSAVTCLQ 267

Query: 284 SNGVFLTASCMDHRIYLYNVL---QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS 340
            N  F+  S  D  + L+++     +         G     + ++            GS 
Sbjct: 268 FNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR--ASNTKLVCAVGSR 325

Query: 341 DGNA----YVWQVNK 351
           +G       V   + 
Sbjct: 326 NGTEETKLLVLDFDV 340

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 2e-13
 Identities = 33/330 (10%), Positives = 82/330 (24%), Gaps = 33/330 (10%)

Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL---MGHTGSIKSLCSHPTN 162
           A ++ I D+  I   + +L  S D ++ ++  + +     L   + +   +         
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 163 SDILVSGSRDGSFAIWDLR-----CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217
              +  G+  G     DL         +                      S    +    
Sbjct: 69  DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128

Query: 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ---------ITQAWPHAESSS 268
             +     +       +          +    +R +            +        +  
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188

Query: 269 AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV-----------LQLDKGPIQHFSGC 317
               +                  S +D R+ +                  +    +    
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248

Query: 318 RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAG 377
            +       E  P    + +  SDG    W +   +   IK  +   E + V    ++  
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK--KIKNFAKFNEDSVVKIACSDNI 306

Query: 378 KIVTSSDDYTVRLWSLENSRCSSMRSPSSV 407
             + +SDD T +  +  +   +   + SS+
Sbjct: 307 LCLATSDD-TFKTNAAIDQ--TIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 5e-07
 Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 4/126 (3%)

Query: 56  VSFCKTSKNSHIFAVSDEDGYVSL--FDSRRKLPSFACHRENAEKARISDWVAHQNAIFD 113
                  K    +A S  DG V++  FD +    + +                    +  
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 114 LCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG 173
           + +      + TA  D  I  W+ + +K                +   + +IL   + D 
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIAC--SDNILCLATSDD 314

Query: 174 SFAIWD 179
           +F    
Sbjct: 315 TFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 2/131 (1%)

Query: 328 ICPNASHILSGSSDGNAYVWQV--NKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD 385
           I P+ S +L  S DG+  V++        D ++   +   +   N+  N   +I   +  
Sbjct: 19  IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ 78

Query: 386 YTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVL 445
             +    L  S      + +     +  I      KL      G +     R+Y    + 
Sbjct: 79  GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA 138

Query: 446 NQINSSDPKNM 456
            +  +S+   +
Sbjct: 139 VKNLNSNNTKV 149

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 3/41 (7%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399
            ++    ++ +   P++   ++ +S D ++ ++  +    +
Sbjct: 7   EQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKN 46

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.0 bits (164), Expect = 6e-13
 Identities = 38/356 (10%), Positives = 86/356 (24%), Gaps = 68/356 (19%)

Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSD 164
               I    W K+ T I     +  + I++    K      L  H G +  +   P +S+
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSN 64

Query: 165 ILVSGSRDGSFAIWDLRC---KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM 221
            +V+   D +  +W L+    K +                      +             
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 222 SITSVLYLKDEVSIATASAVNSI-----------------VKFWDTRNLKAQITQAWPHA 264
              +  ++   +     S V S+                  + +     + +   A    
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

Query: 265 ESSSAKETRLHGISSLSQDSNGV--FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESF 322
            S       +   SS     +GV      S +    +   V   D       +    E+ 
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244

Query: 323 YVKSEICPNASHILSGSSDGNAYVWQVN-------------------------------- 350
            + +      S +++   D    ++  +                                
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304

Query: 351 --------KPQADPIKLKSHDGEVTAVNWCPNEAG---KIVTSSDDYTVRLWSLEN 395
                      A       H   V+ ++          +  T+  D  + +W + +
Sbjct: 305 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 330 PNASHILSGSSDGNAYVWQVNKPQADPIK-LKSHDGEVTAVNWCPNEAGKIVTSSDDYTV 388
            + + I    ++   ++++ +  +   +  LK H+G+VT V+W P+   +IVT   D   
Sbjct: 17  KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNA 75

Query: 389 RLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNG 426
            +W+L+            + R    +      K F  G
Sbjct: 76  YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG 113

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 22/193 (11%), Positives = 47/193 (24%), Gaps = 14/193 (7%)

Query: 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281
            I+   + KD   IA     N  V  ++    K                      ++ + 
Sbjct: 9   PISCHAWNKDRTQIAICPN-NHEVHIYEKSGNKWVQVHELKEHNGQ---------VTGVD 58

Query: 282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD 341
              +   +     D   Y++      +         RI          PN      GS  
Sbjct: 59  WAPDSNRIVTCGTDRNAYVWT--LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS 116

Query: 342 GNAYVWQVNKPQADPIKLKSHDGEVTAVN--WCPNEAGKIVTSSDDYTVRLWSLENSRCS 399
               +    +     +         + V        +  +   S D+  R++S       
Sbjct: 117 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 176

Query: 400 SMRSPSSVRRRVM 412
              +P+    ++ 
Sbjct: 177 ERPAPTPWGSKMP 189

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 20/140 (14%)

Query: 46  HHGEETPPLAVSFCKTSKNSHIFAV-SDEDGYVSLFDSRRKLPSFACHRENAEKARISDW 104
                +  L +        S + A   D    +  +DS     SF    +  +++     
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 295

Query: 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHP---T 161
            A +                  + D+      +      G    H  S+  +        
Sbjct: 296 TARE---------------RFQNLDKKASSEGS-AAAGAGLDSLHKNSVSQISVLSGGKA 339

Query: 162 NSDILVSGSRDGSFAIWDLR 181
                 +   DG  +IWD+R
Sbjct: 340 KCSQFCTTGMDGGMSIWDVR 359

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (159), Expect = 2e-12
 Identities = 42/355 (11%), Positives = 93/355 (26%), Gaps = 75/355 (21%)

Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN---- 162
           H  ++   C   ED  ++T + D+ I+++D+  KK    L GH G + +L          
Sbjct: 11  HMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 69

Query: 163 --------------------------------------SDILVSGSRDGSFAIWDLRCKS 184
                                                    +V+GSRD +  +W L  +S
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSI 244
           S                      +  +           + SV  +    +I  + + ++ 
Sbjct: 130 SVPD-------HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182

Query: 245 VKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL 304
           +  WD   +K     +       S            +     + +        +Y     
Sbjct: 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242

Query: 305 QLDKGPIQHFSGCRIESFY-----------------------VKSEICPNASHILSGSSD 341
               G ++      + +                                 + +IL   S+
Sbjct: 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE 302

Query: 342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396
               ++ +   +     +     ++ +VN+       +     D    L  L+ S
Sbjct: 303 NQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 3/94 (3%)

Query: 88  SFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA-L 146
           +    R          +  H   +  +       NIL +  +    I++    K   A +
Sbjct: 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANI 320

Query: 147 MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
           +     I S+        ++ +  +DG   +  L
Sbjct: 321 LKDADQIWSVNFKGKT--LVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 324 VKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS 383
           V + +    +++++G+ D    V+     +   ++L  HDG V A+ +     G +V+ S
Sbjct: 15  VITCLQFEDNYVITGADDKMIRVYDSINKKF-LLQLSGHDGGVWALKYAHG--GILVSGS 71

Query: 384 DDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNG 426
            D TVR+W ++   C+ +    +   R + I   +  K  + G
Sbjct: 72  TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 114

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.3 bits (157), Expect = 3e-12
 Identities = 29/288 (10%), Positives = 62/288 (21%), Gaps = 17/288 (5%)

Query: 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
             + +      ++          T     H+       + P +     SG   G+  IWD
Sbjct: 28  AGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWD 86

Query: 180 LRCKS-----------SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY 228
               +            P  + +           G                S    +   
Sbjct: 87  TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 146

Query: 229 LKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF 288
                     S    I+   D   +       +    +       +H +      S    
Sbjct: 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 206

Query: 289 LTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ 348
                        +  +                        P+ + I S S+D    +W 
Sbjct: 207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 266

Query: 349 VN--KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394
           V   K +         + +   + W       +V+ S +  +   + E
Sbjct: 267 VATLKVEKTIPVGTRIEDQQLGIIWTKQ---ALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 23/77 (29%), Positives = 32/77 (41%)

Query: 104 WVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS 163
            VAH  ++F L W  + T I +AS D+TIKIW+    K    +   T             
Sbjct: 234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 293

Query: 164 DILVSGSRDGSFAIWDL 180
             LVS S +G     + 
Sbjct: 294 QALVSISANGFINFVNP 310

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 4e-10
 Identities = 35/310 (11%), Positives = 73/310 (23%), Gaps = 23/310 (7%)

Query: 107 HQNAIFDLCWIKEDTNILTASGDQT-IKIWDAE--KKKCTGALMGH-TGSIKSLCSHPT- 161
            +N    L +      I    G    ++  D    K        GH +  + ++   P  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM 221
            S  L SG   G   +W         S           +      +S      R      
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 222 SITSVLYLKDEVSIATASAVN-----------------SIVKFWDTRNLKAQITQAWPHA 264
              +        S  +   V+                   +   D  ++       +  +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195

Query: 265 ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYV 324
            S      +   +  +    +      +    R       +  +               +
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255

Query: 325 KSEICPNASHILSGSSDGNAYVWQVNKPQA-DPIKLKSHDGEVTAVNWCPNEAGKIVTSS 383
            +    ++    +  +D    VW V   +      L         V       G+I++ S
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 384 DDYTVRLWSL 393
            D T+  + L
Sbjct: 316 LDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 104 WVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSI--KSLCSHPT 161
                          +     T   D TI++WD    KC          +  + +    T
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306

Query: 162 NSDILVSGSRDGSFAIWDL 180
            +  ++S S DG+   ++L
Sbjct: 307 GNGRIISLSLDGTLNFYEL 325

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 20/278 (7%), Positives = 49/278 (17%), Gaps = 6/278 (2%)

Query: 123 ILTASGDQTIKIWDAEKKKCTGAL-MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181
           ++  +    + + D        +  M       +    P N    V  +  G     DL 
Sbjct: 11  MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70

Query: 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV 241
              +     A        V +  +  + S       A       +               
Sbjct: 71  TCKNTF--HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFS 128

Query: 242 NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY 301
            +               Q +    +                   G +  A  + +     
Sbjct: 129 TADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKG 188

Query: 302 NVLQLDKGPIQHFSGCRIESFYV-KSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360
                      H S     S     +    +     +           +   +    +  
Sbjct: 189 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 248

Query: 361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398
                       P              +  + L+  + 
Sbjct: 249 DLTELYFTGLRSPK--DPNQIYGVLNRLAKYDLKQRKL 284

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 14/140 (10%), Positives = 35/140 (25%), Gaps = 15/140 (10%)

Query: 42  VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARI 101
                       +  +  +   +    A +D        D +              K   
Sbjct: 197 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG------------KTHT 244

Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
            ++       F      +D N +    +  +  +D +++K   A      +   +     
Sbjct: 245 QEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAA-NLDHTYYCVAFDK- 301

Query: 162 NSDILVSGSRDGSFAIWDLR 181
             D L  G      A+++  
Sbjct: 302 KGDKLYLGGTFNDLAVFNPD 321

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 31/313 (9%), Positives = 72/313 (23%), Gaps = 40/313 (12%)

Query: 123 ILTASGDQTIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
           IL  +    + + D EK        +     +       P       + ++  S    DL
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 181 ------RCKSSPKSNCAESFVFSSAVVKGAHLL-------------------------SQ 209
                               +F +A+      L                         ++
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 210 SKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA 269
           +    +   A   IT + + +D   +        ++       ++ +  Q+W     +  
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183

Query: 270 KETRLHGISSLSQDSNGVFLTASCMDHRIY----LYNVLQLDKGPIQHFSGCRIESFYVK 325
               +      S      F TA               +L +D    +             
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243

Query: 326 SEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD 385
                N +   +  +      + + K     IK         +VN   + +  +      
Sbjct: 244 FSTAVNPAKTRAFGAYNVLESFDLEKNA--SIKRVPLPHSYYSVNVSTDGS-TVWLGGAL 300

Query: 386 YTVRLWSLENSRC 398
             +  +  E    
Sbjct: 301 GDLAAYDAETLEK 313

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.4 bits (121), Expect = 1e-07
 Identities = 27/317 (8%), Positives = 72/317 (22%), Gaps = 36/317 (11%)

Query: 105 VAHQNAIFDLCWIKEDTNILTASGD--QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN 162
           V     I  +    +              + I+D    K       + G++ ++      
Sbjct: 39  VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNG 97

Query: 163 SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAAS-- 220
              +V+  R     +     K +      E+ +    +   +  ++    +   +     
Sbjct: 98  KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYV 157

Query: 221 ---------------------MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ 259
                                    +  +  D  ++   S  +      D   L      
Sbjct: 158 MQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLD-PSPDRVVLNFSFEV 216

Query: 260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI 319
                       +       L   S         ++      + + +D G  +       
Sbjct: 217 VSKPFVIPLIPGSPNPT--KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 274

Query: 320 ESFYVKSEIC-PNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGK 378
                   +    A++       G    + V        K+      +T +    +    
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-----KVTEVKNNLTDLRLSADRK-T 328

Query: 379 IVTSSDDYTVRLWSLEN 395
           ++   DD  +  + LE 
Sbjct: 329 VMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 27/265 (10%), Positives = 61/265 (23%), Gaps = 35/265 (13%)

Query: 91  CHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHT 150
              E + +A I+D+    N+ F                 Q I ++D E +K   A   ++
Sbjct: 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS 179

Query: 151 GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS 210
                  +   +S  L   S        D                               
Sbjct: 180 HDYA--PAFDADSKNLYYLSYRSLDPSPDRVV--------------------LNFSFEVV 217

Query: 211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270
            +         S      +   ++              D     + I             
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGE-----YDLNDMYKRSSPINVDPGDYRMIIPL 272

Query: 271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP 330
           E+ +   S         +   +     +  Y+   +    +       +        +  
Sbjct: 273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD---VKTRKVTEVKN-NLTDL----RLSA 324

Query: 331 NASHILSGSSDGNAYVWQVNKPQAD 355
           +   ++    DG  Y + + KP+ +
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEKPEDE 349

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 13/139 (9%), Positives = 33/139 (23%), Gaps = 6/139 (4%)

Query: 51  TPPLAVSFCKTSKNSHIFAVSDEDGY-VSLFDSRRKLPSFACHRENAEKARISDWVAHQN 109
           + P  +     S N                  +     S   + +  +   I    +   
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277

Query: 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSG 169
                   +       A     +  +D + +K T        ++  L     +   ++  
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSA-DRKTVMVR 332

Query: 170 SRDGSFAIWDLRCKSSPKS 188
             DG    + L      ++
Sbjct: 333 KDDGKIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 28/305 (9%), Positives = 79/305 (25%), Gaps = 22/305 (7%)

Query: 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFA-IW 178
           D +++         I D          +     I+ +          + G+R+G F  I+
Sbjct: 14  DGDLIAFVSRGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY 71

Query: 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA 238
           D R   + K       VF+  V +       +          +       ++        
Sbjct: 72  DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131

Query: 239 SAVNSIVKFWDTRNLKAQITQAWPHAESSS-----------AKETRLHGISSLSQDSNGV 287
               S    +       +  +   +   +            A  T      + + D++  
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSK 191

Query: 288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIE--SFYVKS-EICPNASHILSGS---SD 341
            L            + + L+           I          ++ P +    +G    +D
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251

Query: 342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN--EAGKIVTSSDDYTVRLWSLENSRCS 399
                  +N    D   +   +  +   +   +   A     + +   +  + ++  + +
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT 311

Query: 400 SMRSP 404
            +++ 
Sbjct: 312 EVKNN 316

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 17/98 (17%)

Query: 45  EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW 104
                E+  L  S     + +  +  + E G +  +D + +                   
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-----------------KV 310

Query: 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC 142
              +N + DL    +   ++    D  I  +  EK + 
Sbjct: 311 TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 48.7 bits (114), Expect = 8e-07
 Identities = 29/277 (10%), Positives = 75/277 (27%), Gaps = 8/277 (2%)

Query: 125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS 184
             S    I + D    K T  +     +       P  + + V+ +     +I D    +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSI 244
              +  A S     AV      +  +   S   +   + ++        ++ T  +   +
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN----TVAGTVKTGKSPLGL 121

Query: 245 VKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL 304
               D + L          +  ++  +  ++ +S                 +     ++ 
Sbjct: 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS 181

Query: 305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK---S 361
                 + +     ++     S I  N     +  ++ + Y   V+       K+     
Sbjct: 182 ISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP 241

Query: 362 HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398
              +   +   P+     V  S   TV +     +  
Sbjct: 242 VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 28/320 (8%), Positives = 70/320 (21%), Gaps = 45/320 (14%)

Query: 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSI-------KSLCSHPTNSDILVSGSRDG 173
            +    +      + D E  +  G + G              +    T    +  G R  
Sbjct: 19  NDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTD 78

Query: 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV 233
              ++D      P ++          V     + S +           S    + + D  
Sbjct: 79  YVEVFDPV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE 137

Query: 234 S---IATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS------------ 278
                      +    F    +      +    A+ +   E                   
Sbjct: 138 GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI 197

Query: 279 -SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
              +       L       +I+  ++   D   +                  P     ++
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD--GWRPGGWQQVA 255

Query: 338 GSSDGN------------------AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGK- 378
                +                   +V  ++    + +       E+ ++N   +E    
Sbjct: 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 315

Query: 379 IVTSSDDYTVRLWSLENSRC 398
              S+ D T+ +   E+   
Sbjct: 316 YALSTGDKTLYIHDAESGEE 335

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 29/309 (9%), Positives = 66/309 (21%), Gaps = 39/309 (12%)

Query: 127 SGDQTIKIWDAEKKKCTGALMGHTGSI-------KSLCSHPTNSDILVSGSRDGSFAIWD 179
           +G     +  A      G  +G   S+              T+      G R     ++D
Sbjct: 43  AGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD 102

Query: 180 LR-CKSSPKSNCAESFVFSSAVVKGAHLLSQSKR-----------VSRRKAASMSITSVL 227
                        ++  FS            S              +       S   + 
Sbjct: 103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLT 162

Query: 228 YLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287
                  I   +A    +         + +  A   A    A+ T     SS +  +N  
Sbjct: 163 KSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP 222

Query: 288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA--- 344
            +    +   I   ++            G                  +++   + +    
Sbjct: 223 GMLVWAVASSILQGDIPAAGATMKAAIDGNESGR--KADNFRSAGFQMVAKLKNTDGIMI 280

Query: 345 --------------YVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGK-IVTSSDDYTVR 389
                             V           S+  +  A+    + A      S+    + 
Sbjct: 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD 340

Query: 390 LWSLENSRC 398
           ++   + + 
Sbjct: 341 IYDAASDQD 349

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 23/297 (7%), Positives = 68/297 (22%), Gaps = 28/297 (9%)

Query: 125 TASGDQTIKIW--DAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182
            +   Q I +W  + E       ++   G ++ +   P    + V    +     + +  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 183 KSSPKSNCAESFVFSSAV---------------------VKGAHLLSQSKRVSRRKAASM 221
                +  AES +  S                                   V        
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD 128

Query: 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR-----LHG 276
              S     D  ++   +     +  +   +    + Q      +      R      + 
Sbjct: 129 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 188

Query: 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL 336
             +   +     +    +         +Q      ++FS  R  +    +    +     
Sbjct: 189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 248

Query: 337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
             +S    +    +         +  + +    N   +    I      + + ++ +
Sbjct: 249 RTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	512
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.79
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.63
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.56
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.36
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.29
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.27
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.19
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.15
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.13
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.11
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.09
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.09
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.05
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.01
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.01
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.87
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.85
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.66
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.47
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.43
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.42
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.24
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.0
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.92
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.66
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.51
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.47
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.29
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.25
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.24
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.22
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.22
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.18
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.89
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.82
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.44
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.41
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.21
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.17
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.17
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.03
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.86
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.71
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.71
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.77
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.15
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.17
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.91
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.41
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.55
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	83.92

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-42  Score=320.31  Aligned_cols=285  Identities=17%  Similarity=0.230  Sum_probs=239.8

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS  127 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~  127 (512)
                      +|..+|.+|+|   +|+|++||+|+ ||.|+|||+.+.....        ........+|.+.|.+++|+|++++|++|+
T Consensus        49 ~H~~~V~~v~f---s~~g~~latg~-dg~V~iWd~~~~~~~~--------~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~  116 (337)
T d1gxra_          49 NHGEVVCAVTI---SNPTRHVYTGG-KGCVKVWDISHPGNKS--------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             CCSSCCCEEEE---CSSSSEEEEEC-BSEEEEEETTSTTCCS--------CSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             CCCCcEEEEEE---CCCCCEEEEEE-CCEEEEEEccCCcccc--------eeEEeeecCCCCcEEEEEEcCCCCEEEEee
Confidence            79999999999   99999999997 8999999997653311        112334568999999999999999999999


Q ss_pred             CCCcEEEEeCCCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          128 GDQTIKIWDAEKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       128 ~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      .||.|++||+...  +....+..|...|.+++|+|++ .++++++.|+.|++||+.+++.                    
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~--------------------  175 (337)
T d1gxra_         117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTL--------------------  175 (337)
T ss_dssp             SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE--------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc--------------------
Confidence            9999999998754  5567778899999999999987 8999999999999999986532                    


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                             ......|...+.+++|++++..+++ ++.|+.+++||+++++...            ...+...|.+++|+|+
T Consensus       176 -------~~~~~~~~~~v~~l~~s~~~~~~~~-~~~d~~v~i~d~~~~~~~~------------~~~~~~~i~~l~~~~~  235 (337)
T d1gxra_         176 -------VRQFQGHTDGASCIDISNDGTKLWT-GGLDNTVRSWDLREGRQLQ------------QHDFTSQIFSLGYCPT  235 (337)
T ss_dssp             -------EEEECCCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTTEEEE------------EEECSSCEEEEEECTT
T ss_pred             -------ccccccccccccccccccccccccc-ccccccccccccccceeec------------ccccccceEEEEEccc
Confidence                   1234467789999999999998887 4589999999999887653            3345678999999999


Q ss_pred             CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCC
Q 010390          286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGE  365 (512)
Q Consensus       286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~  365 (512)
                      +++|++++.|+.|++||+.....   ...  ......+.+++|+|++++|++|+.||.|++||+.+++..  ....|.+.
T Consensus       236 ~~~l~~~~~d~~i~i~d~~~~~~---~~~--~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~~  308 (337)
T d1gxra_         236 GEWLAVGMESSNVEVLHVNKPDK---YQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSS  308 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTSSCE---EEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEECSSC
T ss_pred             ccccceecccccccccccccccc---ccc--cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE--EEccCCCC
Confidence            99999999999999999865432   222  233456889999999999999999999999999987663  33468899


Q ss_pred             eEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          366 VTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       366 v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      |++++|+|++ ++|++|+.||.|+|||+
T Consensus       309 v~~~~~s~d~-~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         309 VLSCDISVDD-KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEECTTS-CEEEEEETTSCEEEEEE
T ss_pred             EEEEEEeCCC-CEEEEEeCCCeEEEEEE
Confidence            9999999999 89999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-41  Score=321.87  Aligned_cols=310  Identities=22%  Similarity=0.310  Sum_probs=236.2

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccc-----cccccceeccccCCCcEEEEEEecC
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRE-----NAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      ...+|++.|+||+|   ||||++||+|+ |+.|+|||+.++.........     ............|...|++++|+|+
T Consensus        57 ~~~~H~~~V~~l~f---s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~  132 (388)
T d1erja_          57 KSLDHTSVVCCVKF---SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  132 (388)
T ss_dssp             EEEECSSCCCEEEE---CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             eeCCCCCcEEEEEE---CCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC
Confidence            33479999999999   99999999987 899999999876543221111     0111122334578889999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      +++|++|+.||.|++||...++.+..+.+|...|.++.+++++ ..+++++.++.+++||.++.....            
T Consensus       133 ~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~------------  199 (388)
T d1erja_         133 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSL------------  199 (388)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEE------------
T ss_pred             CCcceeccccccccccccccccccccccccccccccccccccc-ccccccccceeeeeeecccccccc------------
Confidence            9999999999999999999999999999999999999999987 899999999999999987543211            


Q ss_pred             cccccccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                      ...+.....++.+.+ ++..+++ |+.|+.|++||.+++...........    ....|...|.
T Consensus       200 ----------------~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~i~~~~~~~~~~~~~~~~~----~~~~h~~~v~  258 (388)
T d1erja_         200 ----------------TLSIEDGVTTVAVSPGDGKYIAA-GSLDRAVRVWDSETGFLVERLDSENE----SGTGHKDSVY  258 (388)
T ss_dssp             ----------------EEECSSCEEEEEECSTTCCEEEE-EETTSCEEEEETTTCCEEEEEC----------CCCSSCEE
T ss_pred             ----------------ccccccccccccccCCCCCeEEE-EcCCCeEEEeecccCccceeeccccc----cccCCCCCEE
Confidence                            112333455666666 4555554 66899999999998876654432222    3456778899


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEcccCCCCce--------EeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPI--------QHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      +++|+|++++|++++.||.|++||+........        ...........+.+++|+|++++|++|+.||.|++||+.
T Consensus       259 ~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~  338 (388)
T d1erja_         259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK  338 (388)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred             EEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            999999999999999999999999876433211        111122234568899999999999999999999999999


Q ss_pred             CCCCCCceeccccCCeEEEEe------CCCCCCeEEEEeCCCcEEEEeCC
Q 010390          351 KPQADPIKLKSHDGEVTAVNW------CPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       351 ~~~~~~~~~~~h~~~v~~v~~------~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      +++. +..+.+|.+.|+++++      +|++ .+|+||+.||+|+||+++
T Consensus       339 ~~~~-~~~l~~H~~~V~~~~~~~~~~~spd~-~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         339 SGNP-LLMLQGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TCCE-EEEEECCSSCEEEEEECSSCTTCTTC-EEEEEEETTSEEEEEEEE
T ss_pred             CCcE-EEEEeCCCCCEEEEEEecCcccCCCC-CEEEEEeCCCEEEEEeee
Confidence            8876 5788999999999975      5677 799999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.6e-41  Score=308.29  Aligned_cols=288  Identities=11%  Similarity=0.119  Sum_probs=234.4

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  124 (512)
                      ....+.+.+..+++   +|+|+.||.+. ++.|.+||+++...             ...+.+|.+.|++++|+|+|++|+
T Consensus        12 ~p~~~r~~~~~~a~---~~~g~~l~~~~-~~~v~i~~~~~~~~-------------~~~~~~H~~~v~~~~~sp~g~~la   74 (311)
T d1nr0a1          12 LPRTARGTAVVLGN---TPAGDKIQYCN-GTSVYTVPVGSLTD-------------TEIYTEHSHQTTVAKTSPSGYYCA   74 (311)
T ss_dssp             CCCCCTTCCCCCEE---CTTSSEEEEEE-TTEEEEEETTCSSC-------------CEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCCCCCeEEEEE---cCCCCEEEEEe-CCEEEEEECCCCce-------------eEEEcCCCCCEEEEEEeCCCCeEe
Confidence            33446667788888   99999999986 56799999987643             556789999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          125 TASGDQTIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       125 s~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      +|+.||+|+|||+.+++..  ..+..|...|.+++|+|++ .+|++++.  +..+++|++++++...             
T Consensus        75 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~~-------------  140 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNG-------------  140 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCB-------------
T ss_pred             ccccCceEeeeeeeccccccccccccccCccccccccccc-cccccccccccccccccccccccccc-------------
Confidence            9999999999999887643  5578899999999999988 78888875  4569999998665432             


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                    .+..|...|.+++|+|++..++++|+.|+.|++||+++.+...           ....|...|.++
T Consensus       141 --------------~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~-----------~~~~~~~~i~~v  195 (311)
T d1nr0a1         141 --------------NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS-----------TFGEHTKFVHSV  195 (311)
T ss_dssp             --------------CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE-----------EECCCSSCEEEE
T ss_pred             --------------cccccccccccccccccceeeeccccccccccccccccccccc-----------cccccccccccc
Confidence                          3456788999999999999877778899999999999877655           456677889999


Q ss_pred             EeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec-----eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC
Q 010390          281 SQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC-----RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD  355 (512)
Q Consensus       281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~  355 (512)
                      .++|+++++++++.|+.|++||+.....  ...+...     .+...+.+++|+|++++|++|+.||.|+|||+++++. 
T Consensus       196 ~~~p~~~~l~~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~-  272 (311)
T d1nr0a1         196 RYNPDGSLFASTGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-  272 (311)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-
T ss_pred             ccCccccccccccccccccccccccccc--cccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE-
Confidence            9999999999999999999999876432  2222211     1235688999999999999999999999999998775 


Q ss_pred             Cceecccc---CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          356 PIKLKSHD---GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       356 ~~~~~~h~---~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      ...+..|.   ..+.++.|++   ..|++++.||.|++||++
T Consensus       273 ~~~l~~~~~~~~~~~~~~~~~---~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         273 EKTIPVGTRIEDQQLGIIWTK---QALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEECCSSGGGCEEEEEECS---SCEEEEETTCCEEEEETT
T ss_pred             EEEEECCCCccceEEEEEecC---CEEEEEECCCEEEEEeCC
Confidence            34555443   3456666654   579999999999999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-41  Score=307.49  Aligned_cols=287  Identities=21%  Similarity=0.332  Sum_probs=248.7

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI  123 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  123 (512)
                      ..++||.++|++|+|   +|++++||+|+.||.|+|||++++..             +..+.+|.+.|.+++|+|++.++
T Consensus        11 ~~L~GH~~~I~~l~~---sp~~~~l~s~s~Dg~i~iWd~~~~~~-------------~~~~~~h~~~V~~~~~~~~~~~~   74 (317)
T d1vyhc1          11 YALSGHRSPVTRVIF---HPVFSVMVSASEDATIKVWDYETGDF-------------ERTLKGHTDSVQDISFDHSGKLL   74 (317)
T ss_dssp             CEEECCSSCEEEEEE---CSSSSEEEEEESSSCEEEEETTTCCC-------------CEEECCCSSCEEEEEECTTSSEE
T ss_pred             EEEcCCCCCeEEEEE---cCCCCEEEEEeCCCeEEEEECCCCCE-------------EEEEeCCCCcEEEEeeecccccc
Confidence            467899999999999   99999999999999999999987643             67788999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390          124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG  203 (512)
Q Consensus       124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  203 (512)
                      +++..++.+.+|+....+....+..|...+.++.|++++ ..+++++.|+.+++||++++...                 
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~-----------------  136 (317)
T d1vyhc1          75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV-----------------  136 (317)
T ss_dssp             EEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE-----------------
T ss_pred             cccccccccccccccccccccccccccccceeeeccCCC-ceEEeeccCcceeEeecccceee-----------------
Confidence            999999999999999999988999999999999999988 89999999999999999865422                 


Q ss_pred             cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390          204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD  283 (512)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  283 (512)
                                ..+..|...+.+++|++++..+++ ++.|+.|++|++.+......           +..+...+.++.++
T Consensus       137 ----------~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~v~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~  194 (317)
T d1vyhc1         137 ----------KTFTGHREWVRMVRPNQDGTLIAS-CSNDQTVRVWVVATKECKAE-----------LREHRHVVECISWA  194 (317)
T ss_dssp             ----------EEEECCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCCEEEE-----------ECCCSSCEEEEEEC
T ss_pred             ----------eEEccCCCcceeeecccCCCEEEE-EeCCCeEEEEeeccceeeEE-----------EecCCCCceEEEEe
Confidence                      244567788999999999998887 45899999999998776553           34445556666665


Q ss_pred             CC--------------------CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390          284 SN--------------------GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN  343 (512)
Q Consensus       284 ~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  343 (512)
                      ++                    +.++++++.|+.|++||+.+.  ..+..+.++.  ..+.+++++|++++|++|+.||.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~--~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg~  270 (317)
T d1vyhc1         195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG--MCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKT  270 (317)
T ss_dssp             CSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT--EEEEEEECCS--SCEEEEEECSSSSCEEEEETTTE
T ss_pred             eccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC--cEEEEEeCCC--CCEEEEEECCCCCEEEEEECCCe
Confidence            54                    467999999999999998763  3455555543  56888999999999999999999


Q ss_pred             EEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       344 i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      |++||+.+++. +..+.+|.+.|++++|+|++ .+|++|+.||+|+|||
T Consensus       271 i~iwd~~~~~~-~~~~~~h~~~V~~~~~s~~~-~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         271 LRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCTTSCC-CEEEECCSSCEEEEEECSSS-SCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCcE-EEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEeC
Confidence            99999998776 57889999999999999999 8999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-39  Score=297.87  Aligned_cols=291  Identities=17%  Similarity=0.259  Sum_probs=242.1

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .....++||.++|++|+|   +|++++||+|+.||.|+|||+.++.             .+..+..|...|.+++|+|++
T Consensus        46 ~~~~tL~GH~~~I~~l~~---s~~~~~l~sgs~Dg~v~iWd~~~~~-------------~~~~~~~~~~~v~~v~~~~~~  109 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHW---GTDSRLLVSASQDGKLIIWDSYTTN-------------KVHAIPLRSSWVMTCAYAPSG  109 (340)
T ss_dssp             CEEEEECCCSSCEEEEEE---CTTSSEEEEEETTTEEEEEETTTTE-------------EEEEEECSCSCEEEEEECTTS
T ss_pred             eeeEEECCCCCCEEEEEE---CCCCCEEEEEECCCceeeeecccce-------------eEEEEecccccEEeeEeeccc
Confidence            345678999999999999   9999999999999999999998763             367788999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCe----eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          121 TNILTASGDQTIKIWDAEKKK----CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      .++++|+.|+.+++|+.....    ....+.+|............  ..+.....|.....++......           
T Consensus       110 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----------  176 (340)
T d1tbga_         110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQ-----------  176 (340)
T ss_dssp             SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEE-----------
T ss_pred             eeeeeecccceeecccccccccccccceecccccccccccccccc--cccccccccccccccccccccc-----------
Confidence            999999999999999976643    44556778777776666553  6788888899999888764321           


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                      ......+...+....+.+.+..+++ |..|+.|++||+++++...           .+..|...
T Consensus       177 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~v~i~d~~~~~~~~-----------~~~~h~~~  228 (340)
T d1tbga_         177 ----------------TTTFTGHTGDVMSLSLAPDTRLFVS-GACDASAKLWDVREGMCRQ-----------TFTGHESD  228 (340)
T ss_dssp             ----------------EEEEECCSSCEEEEEECTTSSEEEE-EETTTEEEEEETTTTEEEE-----------EECCCSSC
T ss_pred             ----------------cccccccceeEeeeccccccceeEE-eecCceEEEEECCCCcEEE-----------EEeCCCCC
Confidence                            1123345567888888888888776 5589999999999887665           35677889


Q ss_pred             eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390          277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP  356 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~  356 (512)
                      |++++|+|++.+|++++.||.|++||+....  ....+........+..++|+|++++|++|+.||.|++||+.+++. .
T Consensus       229 i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~  305 (340)
T d1tbga_         229 INAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-A  305 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE-E
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeecccc--cccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE-E
Confidence            9999999999999999999999999986532  333343444455688899999999999999999999999998776 5


Q ss_pred             ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      ..+.+|.+.|++++|+|++ .+|+||+.||.|+|||
T Consensus       306 ~~~~~H~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         306 GVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECCCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred             EEEcCCCCCEEEEEEeCCC-CEEEEEccCCEEEEeC
Confidence            7889999999999999999 8999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.4e-39  Score=301.64  Aligned_cols=304  Identities=11%  Similarity=0.148  Sum_probs=233.4

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG  128 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~  128 (512)
                      +.+||.|++|   +|||++||+|+.||.|+|||.++++.           ..+..+++|.+.|++++|+|++++|++|+.
T Consensus         6 ~~~pIt~~~~---s~dg~~la~~~~~~~i~iw~~~~~~~-----------~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~   71 (371)
T d1k8kc_           6 LVEPISCHAW---NKDRTQIAICPNNHEVHIYEKSGNKW-----------VQVHELKEHNGQVTGVDWAPDSNRIVTCGT   71 (371)
T ss_dssp             CSSCCCEEEE---CTTSSEEEEECSSSEEEEEEEETTEE-----------EEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCeEEEEE---CCCCCEEEEEeCCCEEEEEECCCCCE-----------EEEEEecCCCCCEEEEEECCCCCEEEEEEC
Confidence            4578899988   99999999999999999999876532           346778899999999999999999999999


Q ss_pred             CCcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390          129 DQTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL  206 (512)
Q Consensus       129 dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (512)
                      |++|+|||+.++..  ...+.+|...|++++|+|++ +.|++++.|+.|++|++.......                   
T Consensus        72 D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~-------------------  131 (371)
T d1k8kc_          72 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWW-------------------  131 (371)
T ss_dssp             TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEE-------------------
T ss_pred             CCeEEEEeeccccccccccccccccccccccccccc-ccceeecccCcceeeeeecccccc-------------------
Confidence            99999999987654  44567788999999999988 899999999999999987544211                   


Q ss_pred             ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC-------CccccccccccccCeeE
Q 010390          207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP-------HAESSSAKETRLHGISS  279 (512)
Q Consensus       207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~  279 (512)
                          ........|...|.+++|+|++..+++ |+.|+.|++||.............       ..........|...|.+
T Consensus       132 ----~~~~~~~~~~~~v~~v~~~p~~~~l~s-~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  206 (371)
T d1k8kc_         132 ----VCKHIKKPIRSTVLSLDWHPNSVLLAA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG  206 (371)
T ss_dssp             ----EEEEECTTCCSCEEEEEECTTSSEEEE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred             ----cccccccccccccccccccccccceec-cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEE
Confidence                111234467789999999999998876 558999999998765432211111       01111234567778999


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC----
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD----  355 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~----  355 (512)
                      ++|+|++++|++++.|+.|++||+...  ..+..+..+  ...+.+++|+|++++|++|. |+.+++|........    
T Consensus       207 ~~~s~~g~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~--~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~  281 (371)
T d1k8kc_         207 VCFSANGSRVAWVSHDSTVCLADADKK--MAVATLASE--TLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFG  281 (371)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEEGGGT--TEEEEEECS--SCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEEC
T ss_pred             EEeecccccccccccCCcceEEeeecc--cceeeeecc--cccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEe
Confidence            999999999999999999999999763  345555544  34578899999999888776 676777654321100    


Q ss_pred             ------------------------------------CceeccccCCeEEEEeCCCCC---CeEEEEeCCCcEEEEeCCCC
Q 010390          356 ------------------------------------PIKLKSHDGEVTAVNWCPNEA---GKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       356 ------------------------------------~~~~~~h~~~v~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~  396 (512)
                                                          ......|.+.|+++++.+.+.   ..|+|+|.||.|+|||+++.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         282 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             CCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             eeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence                                                001124888999999977542   35899999999999998653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4e-38  Score=287.11  Aligned_cols=290  Identities=19%  Similarity=0.266  Sum_probs=224.7

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecc-ccCCCcEEEEEEec
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-VAHQNAIFDLCWIK  118 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s~  118 (512)
                      |.+...++||.++|++|+|   +|||++||+|+.||.|++||++++..             +..+ .+|...|++++|+|
T Consensus         2 g~~~~~~~GH~~~V~~l~~---s~dg~~l~s~s~Dg~v~vWd~~~~~~-------------~~~~~~~h~~~v~~v~~~~   65 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSS---SADGKTLFSADAEGHINSWDISTGIS-------------NRVFPDVHATMITGIKTTS   65 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEE---CTTSSEEEEEETTSCEEEEETTTCCE-------------EECSSCSCSSCEEEEEECT
T ss_pred             CccceEcCCCCCCcEEEEE---CCCCCEEEEEcCCCeEEEEECCCCcE-------------EEEEcCCCCCcEEEEEeec
Confidence            6778899999999999999   99999999999999999999987643             3334 57999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCee---eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390          119 EDTNILTASGDQTIKIWDAEKKKC---TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       119 ~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      +++ +++++.|+.+++|+......   ......+...+.+++|++++ .++++++ ++.+++|+.....           
T Consensus        66 ~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~~~-~~~i~~~~~~~~~-----------  131 (299)
T d1nr0a2          66 KGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAAC-YKHIAIYSHGKLT-----------  131 (299)
T ss_dssp             TSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEEEE-SSEEEEEETTEEE-----------
T ss_pred             cce-eecccceeeEEEeccCCcccccccccccccccccccccccccc-ccccccc-ccccccccccccc-----------
Confidence            986 55667899999999865432   22234567789999999987 6666555 5689999854211           


Q ss_pred             eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH  275 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (512)
                                          .......+.+++|+|++..+++ |+.|+.|++||+++.+....          ....|..
T Consensus       132 --------------------~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~~~d~~~~~~~~~----------~~~~~~~  180 (299)
T d1nr0a2         132 --------------------EVPISYNSSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEV----------KTIVHPA  180 (299)
T ss_dssp             --------------------EEECSSCEEEEEECTTSCEEEE-EETTSEEEEEEEETTEEEEE----------EEEECSS
T ss_pred             --------------------cccccccccccccccccccccc-cccccccccccccccccccc----------ccccccc
Confidence                                0112346788999999998887 55899999999987664432          2445677


Q ss_pred             CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC-ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG-PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      .|.+++|+|++++|++++.|+.|++||+.+.... ....+..|  ...+.+++|+|++++|++|+.||.|++||+.+...
T Consensus       181 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH--TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence            8999999999999999999999999998764321 12222333  35688899999999999999999999999988765


Q ss_pred             CCcee-cc-ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          355 DPIKL-KS-HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       355 ~~~~~-~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      ..... .. +...|.++.|. ++ .+|++++.||.|++||+.
T Consensus       259 ~~~~~~~~~~~~~v~~~~~~-~~-~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         259 HPIIIKGAHAMSSVNSVIWL-NE-TTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CCEEETTSSTTSCEEEEEEE-ET-TEEEEEETTSCEEEEECC
T ss_pred             ceEEEecCCCCCcEEEEEEC-CC-CEEEEEeCCCEEEEEecc
Confidence            43322 23 34567777665 45 699999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.1e-37  Score=280.03  Aligned_cols=260  Identities=15%  Similarity=0.141  Sum_probs=211.8

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      .....+.+|.+.|.+++|   +|+|++||+|+.||.|+|||+.+...           .....+..|.+.|.+++|+|++
T Consensus        49 ~~~~~~~~H~~~v~~~~~---sp~g~~latg~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~~v~~v~~s~d~  114 (311)
T d1nr0a1          49 TDTEIYTEHSHQTTVAKT---SPSGYYCASGDVHGNVRIWDTTQTTH-----------ILKTTIPVFSGPVKDISWDSES  114 (311)
T ss_dssp             SCCEEECCCSSCEEEEEE---CTTSSEEEEEETTSEEEEEESSSTTC-----------CEEEEEECSSSCEEEEEECTTS
T ss_pred             ceeEEEcCCCCCEEEEEE---eCCCCeEeccccCceEeeeeeecccc-----------ccccccccccCccccccccccc
Confidence            344456899999999999   99999999999999999999987643           1234577899999999999999


Q ss_pred             CEEEEEeC--CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          121 TNILTASG--DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       121 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      ++|++++.  +..++||++++++....+.+|...|++++|+|++...|++|+.|+.|++||+++.+.             
T Consensus       115 ~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-------------  181 (311)
T d1nr0a1         115 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-------------  181 (311)
T ss_dssp             CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccc-------------
Confidence            99998886  466999999999999999999999999999999866799999999999999985432             


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                                    ......|...|.++.|+|+++.+++ ++.|+.|++||..++...........    ...+|...|+
T Consensus       182 --------------~~~~~~~~~~i~~v~~~p~~~~l~~-~~~d~~v~~~d~~~~~~~~~~~~~~~----~~~~h~~~V~  242 (311)
T d1nr0a1         182 --------------KSTFGEHTKFVHSVRYNPDGSLFAS-TGGDGTIVLYNGVDGTKTGVFEDDSL----KNVAHSGSVF  242 (311)
T ss_dssp             --------------EEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTCCEEEECBCTTS----SSCSSSSCEE
T ss_pred             --------------ccccccccccccccccCcccccccc-cccccccccccccccccccccccccc----cccccccccc
Confidence                          2244567889999999999998887 44799999999998776654432222    4567888999


Q ss_pred             EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece-eceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390          279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-IESFYVKSEICPNASHILSGSSDGNAYVWQVN  350 (512)
Q Consensus       279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~  350 (512)
                      +++|+|++++|++|+.||.|++||+++.  ..+..+..+. ....+..+.|  ++++|++++.||.|++||.+
T Consensus       243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t~--~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         243 GLTWSPDGTKIASASADKTIKIWNVATL--KVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCC--cEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            9999999999999999999999998764  3445554432 2233444554  56679999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-36  Score=277.35  Aligned_cols=255  Identities=16%  Similarity=0.267  Sum_probs=211.6

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee-----cccCcCCCEEEEEeeCCCCCeEEEEeCCC
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG-----ALMGHTGSIKSLCSHPTNSDILVSGSRDG  173 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  173 (512)
                      +.+..+ .|...|++++|+|++++|++|+ ||.|+|||+.++....     ...+|.+.|.+++|+|++ ++|++++.||
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~~dg  119 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEAS  119 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSS
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-CEEEEeeccc
Confidence            334444 7999999999999999999987 8999999998764322     235788999999999988 8999999999


Q ss_pred             cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc
Q 010390          174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL  253 (512)
Q Consensus       174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~  253 (512)
                      .|++||+.....                         ........|...+.++.|+|++..++++ +.|+.|++||+.+.
T Consensus       120 ~i~iwd~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~~~~~~~~  173 (337)
T d1gxra_         120 TLSIWDLAAPTP-------------------------RIKAELTSSAPACYALAISPDSKVCFSC-CSDGNIAVWDLHNQ  173 (337)
T ss_dssp             EEEEEECCCC---------------------------EEEEEEECSSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTT
T ss_pred             cccccccccccc-------------------------cccccccccccccccccccccccccccc-cccccccccccccc
Confidence            999999875432                         1122445677889999999999988874 47999999999987


Q ss_pred             cceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390          254 KAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS  333 (512)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  333 (512)
                      +...           ....|...|.+++|++++..+++++.|+.|++||+++..  .+   ........+.+++|+|+++
T Consensus       174 ~~~~-----------~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~--~~---~~~~~~~~i~~l~~~~~~~  237 (337)
T d1gxra_         174 TLVR-----------QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR--QL---QQHDFTSQIFSLGYCPTGE  237 (337)
T ss_dssp             EEEE-----------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EE---EEEECSSCEEEEEECTTSS
T ss_pred             cccc-----------cccccccccccccccccccccccccccccccccccccce--ee---cccccccceEEEEEccccc
Confidence            7654           355677889999999999999999999999999987632  22   2223456688999999999


Q ss_pred             EEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          334 HILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       334 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      +|++|+.|+.|++||+.+...  .....|...|++++|+|++ .+|++++.||.|++||+.+++.+..
T Consensus       238 ~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~~~~~  302 (337)
T d1gxra_         238 WLAVGMESSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             EEEEEETTSCEEEEETTSSCE--EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccceecccccccccccccccc--ccccccccccceEEECCCC-CEEEEEeCCCeEEEEECCCCCEEEE
Confidence            999999999999999987765  4667899999999999999 8999999999999999999886654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-35  Score=273.72  Aligned_cols=327  Identities=16%  Similarity=0.248  Sum_probs=228.5

Q ss_pred             EeecCCccCCc-ceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390           43 TVEHHGEETPP-LAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT  121 (512)
Q Consensus        43 ~~~~~gh~~~v-~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~  121 (512)
                      ...++||.+.| .|+++     ++++||+|+.||.|+|||+.++             +.+.++.+|.+.|++++|+|+ .
T Consensus         5 ~~tL~GH~~~vitc~~~-----~~~~l~tgs~Dg~i~vWd~~~~-------------~~~~~l~~H~~~V~~l~~s~~-~   65 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINK-------------KFLLQLSGHDGGVWALKYAHG-G   65 (355)
T ss_dssp             EEEEECCSSSCEEEEEE-----ETTEEEEEETTTEEEEEETTTT-------------EEEEEEECCSSCEEEEEEETT-T
T ss_pred             cEEECCcCCCcEEEEEE-----CCCEEEEEeCCCeEEEEECCCC-------------cEEEEEECCCCCEEEEEEcCC-C
Confidence            45689999887 45544     6889999999999999999776             347888999999999999985 5


Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeecccCcCC--CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALMGHTG--SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      +|++|+.|++|++|++...+.......+..  ......+.+++ ..+++++.|+.|++||++..................
T Consensus        66 ~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d1nexb2          66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF  144 (355)
T ss_dssp             EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEE
T ss_pred             EEEEEeccccccccccccccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccce
Confidence            899999999999999999887766544333  34555667766 889999999999999998765443221111000000


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                      .    ..............|...+.  .+.+++..++. +..|+.|++||+++++...           ....+...+.+
T Consensus       145 ~----~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~-~~~d~~i~~~d~~~~~~~~-----------~~~~~~~~~~~  206 (355)
T d1nexb2         145 H----TPEENPYFVGVLRGHMASVR--TVSGHGNIVVS-GSYDNTLIVWDVAQMKCLY-----------ILSGHTDRIYS  206 (355)
T ss_dssp             S----CTTTCTTEEEEEECCSSCEE--EEEEETTEEEE-EETTSCEEEEETTTTEEEE-----------EECCCSSCEEE
T ss_pred             e----ccccccceeeeeeecccccc--ccccccceeee-ecccceeeeeeccccccee-----------eeecccccccc
Confidence            0    00000111112223333333  34566777776 5589999999999877654           34455677899


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL  359 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~  359 (512)
                      +.+++++.++++++.|+.|++||+.+.  ..+..+.++.  ..+.+++++  +++|++|+.||.|++||+++...   .+
T Consensus       207 ~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~h~--~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~---~~  277 (355)
T d1nexb2         207 TIYDHERKRCISASMDTTIRIWDLENG--ELMYTLQGHT--ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR---KF  277 (355)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTTC--CEEEEECCCS--SCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE---EE
T ss_pred             ccccccceeeecccccceEEeeecccc--cccccccccc--ccccccccc--cceeeeeecccccccccccccce---ec
Confidence            999999999999999999999998763  3455555553  446667775  57999999999999999987643   55


Q ss_pred             ccccCCeEEEEe-CCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchh
Q 010390          360 KSHDGEVTAVNW-CPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTEC  419 (512)
Q Consensus       360 ~~h~~~v~~v~~-~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (512)
                      ..|...+.++.+ ++++ .+|++| .||.|++||+++++++.... ..+...++++.+++.
T Consensus       278 ~~~~~~~~~~~~~~~~~-~~l~~g-~d~~i~vwd~~tg~~~~~~~-~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         278 SYHHTNLSAITTFYVSD-NILVSG-SENQFNIYNLRSGKLVHANI-LKDADQIWSVNFKGK  335 (355)
T ss_dssp             EEECTTCCCCCEEEECS-SEEEEE-ETTEEEEEETTTCCBCCSCT-TTTCSEEEEEEEETT
T ss_pred             ccccCCceEEEEEcCCC-CEEEEE-eCCEEEEEECCCCCEEEEEe-cCCCCCEEEEEEcCC
Confidence            667777776654 5555 555555 58999999999999875422 233455666666554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-35  Score=278.77  Aligned_cols=315  Identities=16%  Similarity=0.249  Sum_probs=231.0

Q ss_pred             EEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc
Q 010390           68 FAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM  147 (512)
Q Consensus        68 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  147 (512)
                      ...+..++.+.+|+......        .+ ..+....+|.+.|++|+|+|||++|++|+ |++|+|||+.+++.+..+.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~--------~~-~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~  100 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPRE--------ID-VELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLS  100 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCC--------EE-EEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEEC
T ss_pred             ccccCCCCcEEEeCCCCCcc--------ee-eeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeec
Confidence            34566788899999754422        11 11233347999999999999999999986 8999999999987765553


Q ss_pred             ------------------CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390          148 ------------------GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ  209 (512)
Q Consensus       148 ------------------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (512)
                                        .|...|++++|+|++ ++|++|+.||.|++||...++.                        
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~~~~------------------------  155 (388)
T d1erja_         101 DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKI------------------------  155 (388)
T ss_dssp             C-----------------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE------------------------
T ss_pred             ccccccccccccccccccCCCCCEEEEEECCCC-Ccceeccccccccccccccccc------------------------
Confidence                              366779999999988 8999999999999999875432                        


Q ss_pred             cccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEE
Q 010390          210 SKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL  289 (512)
Q Consensus       210 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  289 (512)
                         .....+|...|.++.+++++..+++ ++.++.+++||.++......           ...+...+....+.+++.+|
T Consensus       156 ---~~~~~~h~~~v~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l  220 (388)
T d1erja_         156 ---VMILQGHEQDIYSLDYFPSGDKLVS-GSGDRTVRIWDLRTGQCSLT-----------LSIEDGVTTVAVSPGDGKYI  220 (388)
T ss_dssp             ---EEEECCCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTTEEEEE-----------EECSSCEEEEEECSTTCCEE
T ss_pred             ---ccccccccccccccccccccccccc-cccceeeeeeeccccccccc-----------cccccccccccccCCCCCeE
Confidence               2245578889999999999998887 45899999999998765542           22222333444445588999


Q ss_pred             EEEecCCeEEEEEcccCCCCceEeee---eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC-----------
Q 010390          290 TASCMDHRIYLYNVLQLDKGPIQHFS---GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD-----------  355 (512)
Q Consensus       290 ~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~-----------  355 (512)
                      ++++.||.|++||.............   ...+...+.+++|+|++++|++|+.||.|++||+.+....           
T Consensus       221 ~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  300 (388)
T d1erja_         221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC  300 (388)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE
T ss_pred             EEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccce
Confidence            99999999999998764322111111   1122456889999999999999999999999999765431           


Q ss_pred             CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccccCCCCcccccCC
Q 010390          356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGS  435 (512)
Q Consensus       356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (512)
                      ......|...|++++|+|++ .+|++|+.||.|++||+.+++++..+..  +...+.++..                .. 
T Consensus       301 ~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~~~~l~~--H~~~V~~~~~----------------~~-  360 (388)
T d1erja_         301 EVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNPLLMLQG--HRNSVISVAV----------------AN-  360 (388)
T ss_dssp             EEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEE----------------CS-
T ss_pred             eeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEeC--CCCCEEEEEE----------------ec-
Confidence            12345788999999999999 8999999999999999999988765432  2222322221                11 


Q ss_pred             CCcCCCchhcccCCCCC
Q 010390          436 DRSYNSDDVLNQINSSD  452 (512)
Q Consensus       436 ~~~~~p~~~~~~~~~~~  452 (512)
                      ...|+|++.+++.++..
T Consensus       361 ~~~~spd~~~l~s~s~D  377 (388)
T d1erja_         361 GSSLGPEYNVFATGSGD  377 (388)
T ss_dssp             SCTTCTTCEEEEEEETT
T ss_pred             CcccCCCCCEEEEEeCC
Confidence            55788999888876543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.2e-35  Score=266.52  Aligned_cols=256  Identities=21%  Similarity=0.336  Sum_probs=218.0

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL  180 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  180 (512)
                      ...+++|.+.|++|+|+|++++|+||+.||+|+|||+.+++++.++.+|...|.+++|+|++ .++++++.++.+.+|+.
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDF   88 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEET
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccc-ccccccccccccccccc
Confidence            55789999999999999999999999999999999999999999999999999999999988 89999999999999998


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA  260 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~  260 (512)
                      ......                           .....|...+.++.+++++..+++++ .|+.+++||+++++...   
T Consensus        89 ~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~---  137 (317)
T d1vyhc1          89 QGFECI---------------------------RTMHGHDHNVSSVSIMPNGDHIVSAS-RDKTIKMWEVQTGYCVK---  137 (317)
T ss_dssp             TSSCEE---------------------------ECCCCCSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTCCEEE---
T ss_pred             cccccc---------------------------cccccccccceeeeccCCCceEEeec-cCcceeEeecccceeee---
Confidence            754322                           23446778899999999999988754 89999999999887655   


Q ss_pred             CCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC---------
Q 010390          261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN---------  331 (512)
Q Consensus       261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---------  331 (512)
                              .+..|...+.++++++++.+|++++.|+.|++|++...  .....+..+  ...+..++++|+         
T Consensus       138 --------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~--~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~  205 (317)
T d1vyhc1         138 --------TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK--ECKAELREH--RHVVECISWAPESSYSSISEA  205 (317)
T ss_dssp             --------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCC--SSCEEEEEECCSCGGGGGGGC
T ss_pred             --------EEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc--eeeEEEecC--CCCceEEEEeeccccceeecc
Confidence                    35667788999999999999999999999999998663  233333333  233555666554         


Q ss_pred             -----------CCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          332 -----------ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       332 -----------~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                                 +.++++|+.|+.|++|++.+++. ...+.+|...|++++|+|++ .+|++|+.||.|++||+.+++++.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~  283 (317)
T d1vyhc1         206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNKRCMK  283 (317)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSS-SCEEEEETTTEEEEECCTTSCCCE
T ss_pred             ccceeeeeccCCceeEeccCCCEEEEEECCCCcE-EEEEeCCCCCEEEEEECCCC-CEEEEEECCCeEEEEECCCCcEEE
Confidence                       45789999999999999998775 56788999999999999999 899999999999999999988776


Q ss_pred             cc
Q 010390          401 MR  402 (512)
Q Consensus       401 ~~  402 (512)
                      .+
T Consensus       284 ~~  285 (317)
T d1vyhc1         284 TL  285 (317)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.9e-34  Score=259.84  Aligned_cols=255  Identities=14%  Similarity=0.182  Sum_probs=204.3

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      ..+.++||.+.|++++|+|++++|++|+.||+|++||+++++++..+. .|...|++++|+|++ . +++++.|+.+++|
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-D-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-C-EEEEETTTEEEEE
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-e-eecccceeeEEEe
Confidence            367789999999999999999999999999999999999999888874 689999999999986 4 6677789999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      +..........                        .....+...+.++++++++..+++.  .++.+.+|+.......  
T Consensus        82 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~s~~g~~~~~~--~~~~i~~~~~~~~~~~--  133 (299)
T d1nr0a2          82 PAGGSGVDSSK------------------------AVANKLSSQPLGLAVSADGDIAVAA--CYKHIAIYSHGKLTEV--  133 (299)
T ss_dssp             CSSSSSSCTTS------------------------CCEEECSSCEEEEEECTTSSCEEEE--ESSEEEEEETTEEEEE--
T ss_pred             ccCCccccccc------------------------ccccccccccccccccccccccccc--cccccccccccccccc--
Confidence            98754322111                        1222455678999999999877653  3789999986543221  


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  338 (512)
                                   .....+.+++++|++++|++++.||.|++||+.+...   ...........+.+++|+|++++|+++
T Consensus       134 -------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~  197 (299)
T d1nr0a2         134 -------------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV---SEVKTIVHPAEITSVAFSNNGAFLVAT  197 (299)
T ss_dssp             -------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE---EEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             -------------ccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence                         1224578899999999999999999999999865332   222222334568899999999999999


Q ss_pred             cCCCCEEEEecCCCCC--CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          339 SSDGNAYVWQVNKPQA--DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      +.|+.|++||+.+...  ....+.+|...|++++|+|++ .+|++|+.||.|++||+.++.....
T Consensus       198 ~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~~~~  261 (299)
T d1nr0a2         198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSDHPI  261 (299)
T ss_dssp             ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTSCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCcceE
Confidence            9999999999987643  234567899999999999999 8999999999999999998765543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-34  Score=266.88  Aligned_cols=288  Identities=12%  Similarity=0.127  Sum_probs=213.0

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCc-EEEEECCCCCCccccccccccccceeccccCC-CcEEEEEEec--CCCEEEEEe
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGY-VSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCWIK--EDTNILTAS  127 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~--~~~~l~s~~  127 (512)
                      .+.+++|   +|+|+.||+++.+.. |+.||.....           ...+..+.+|. ..|++++|+|  ++.+|++|+
T Consensus        19 ~~t~l~~---~~~~~~la~~~~~~~~i~~~~~~~~~-----------~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs   84 (325)
T d1pgua1          19 FTTHLSY---DPTTNAIAYPCGKSAFVRCLDDGDSK-----------VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD   84 (325)
T ss_dssp             CCCCCEE---ETTTTEEEEEETTEEEEEECCSSCCS-----------SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE
T ss_pred             CeEEEEE---CCCCCEEEEEeCCCEEEEEEeCCCCC-----------ccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEe
Confidence            4678888   999999999875542 4556543322           13356677774 6899999998  678999999


Q ss_pred             CCCcEEEEeCCCCeee--------ecccCcCCCEEEEEeeCCCCCeEEEEe--CCCcEEEEeCCCCCCCCCccccceeee
Q 010390          128 GDQTIKIWDAEKKKCT--------GALMGHTGSIKSLCSHPTNSDILVSGS--RDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       128 ~dg~i~iwd~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      .||+|+|||+..++..        ..+..|.++|.+++|++++ .++++++  .++.+++|+..+++.            
T Consensus        85 ~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~------------  151 (325)
T d1pgua1          85 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGNS------------  151 (325)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCCE------------
T ss_pred             CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCC-CccceeeccccceEEEEeeccccc------------
Confidence            9999999998765433        2345688899999999988 6666665  467899999876542            


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                     ...+.+|...|.+++|+|++..++++++.|+.+++||....+......        ....+...|
T Consensus       152 ---------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~--------~~~~~~~~v  208 (325)
T d1pgua1         152 ---------------LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR--------THHKQGSFV  208 (325)
T ss_dssp             ---------------EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC--------SSSCTTCCE
T ss_pred             ---------------ceeeeecccccccccccccccceEEEeecccccccccccccccceecc--------cccCCCCcc
Confidence                           224457888999999999998877777789999999998766544322        345667789


Q ss_pred             eEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeecee--ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          278 SSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI--ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       278 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      .+++|+|+ +.+|++++.||.|++||+++.  ..+..+.++..  ...+.++++ +++++|++++.|+.|+|||+.+++.
T Consensus       209 ~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~--~~~~~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~  285 (325)
T d1pgua1         209 RDVEFSPDSGEFVITVGSDRKISCFDGKSG--EFLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKC  285 (325)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTTC--CEEEECCBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             EEeeeccccceeccccccccceeeeeeccc--cccccccccccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCCCE
Confidence            99999996 688999999999999998763  34555554432  223344444 6889999999999999999998765


Q ss_pred             CCceeccccC--CeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          355 DPIKLKSHDG--EVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       355 ~~~~~~~h~~--~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                       +..+..|..  .+..+++.+.+..+|++++.||.|++||+
T Consensus       286 -~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         286 -VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             -EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             -EEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence             344444433  34444443333258999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.5e-35  Score=273.27  Aligned_cols=252  Identities=15%  Similarity=0.186  Sum_probs=201.8

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS  185 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  185 (512)
                      .++|++++|+|++++||+|+.||.|+|||+.+++  ++..+.+|.++|++++|+|++ ++|++++.|++|++||+.++..
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeeccccc
Confidence            4789999999999999999999999999998775  667789999999999999988 8999999999999999875431


Q ss_pred             CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                      .                         .......|...|.+++|+|+++.+++ |+.|+.|++|++...........    
T Consensus        86 ~-------------------------~~~~~~~~~~~v~~i~~~p~~~~l~~-~s~d~~i~i~~~~~~~~~~~~~~----  135 (371)
T d1k8kc_          86 K-------------------------PTLVILRINRAARCVRWAPNEKKFAV-GSGSRVISICYFEQENDWWVCKH----  135 (371)
T ss_dssp             E-------------------------EEEECCCCSSCEEEEEECTTSSEEEE-EETTSSEEEEEEETTTTEEEEEE----
T ss_pred             c-------------------------ccccccccccccccccccccccccee-ecccCcceeeeeecccccccccc----
Confidence            1                         12234467789999999999998887 55799999999887654322110    


Q ss_pred             ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc--------------eEeeeeceeceeEEEEEECCC
Q 010390          266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP--------------IQHFSGCRIESFYVKSEICPN  331 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------~~~~~~~~~~~~~~~~~~s~~  331 (512)
                         ....|...|.+++|+|++++|++++.|+.|++||........              ............+.+++|+|+
T Consensus       136 ---~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  212 (371)
T d1k8kc_         136 ---IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN  212 (371)
T ss_dssp             ---ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred             ---cccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc
Confidence               345567789999999999999999999999999975432111              112223334456888999999


Q ss_pred             CCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          332 ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       332 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      +++|++++.|+.|++||+..+.. ...+..|..+|.+++|+|++ .+|++ +.|+.+++|..+..
T Consensus       213 g~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~s~~fs~d~-~~la~-g~d~~~~~~~~~~~  274 (371)
T d1k8kc_         213 GSRVAWVSHDSTVCLADADKKMA-VATLASETLPLLAVTFITES-SLVAA-GHDCFPVLFTYDSA  274 (371)
T ss_dssp             SSEEEEEETTTEEEEEEGGGTTE-EEEEECSSCCEEEEEEEETT-EEEEE-ETTSSCEEEEEETT
T ss_pred             cccccccccCCcceEEeeecccc-eeeeecccccceeeeecCCC-CEEEE-EcCCceEEEEeeCC
Confidence            99999999999999999988765 56788899999999999998 66665 45777777665544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-33  Score=259.52  Aligned_cols=309  Identities=15%  Similarity=0.250  Sum_probs=221.0

Q ss_pred             EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      ...++||++.|.+ ++   +++|++||+|+.||.|+|||+.+++             .+..+.+|.+.|.+++|+++  +
T Consensus         9 ~~~l~GH~~~V~s-~~---~~~g~~l~sgs~Dg~i~vWd~~~~~-------------~~~~~~~h~~~V~~v~~~~~--~   69 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CL---QFCGNRIVSGSDDNTLKVWSAVTGK-------------CLRTLVGHTGGVWSSQMRDN--I   69 (342)
T ss_dssp             CEEEECSTTSCEE-EE---EEETTEEEEEETTSCEEEEETTTCC-------------EEEECCCCSSCEEEEEEETT--E
T ss_pred             CEEECCcCCceEE-EE---EECCCEEEEEeCCCeEEEEECCCCC-------------EEEEEeCCCCCEEEEEeCCC--c
Confidence            4567899999854 23   4578999999999999999998764             37788999999999999864  8


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc-
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV-  201 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-  201 (512)
                      |++|+.|+.+++|+............+...+......+   ..++.+..|+.+.+|+..++.................. 
T Consensus        70 l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (342)
T d2ovrb2          70 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD  146 (342)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC
T ss_pred             cccceecccccccccccccceecccccceeEeeeeccc---ccccccccceeEEEeecccccceeeeecccccceeeccc
Confidence            99999999999999998887777766666776665553   56788888999999998876543221111000000000 


Q ss_pred             ----------cc--cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390          202 ----------KG--AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA  269 (512)
Q Consensus       202 ----------~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  269 (512)
                                ..  ............+..|...+..  +.+++..+++ ++.||.|++||++..+...           .
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s-~~~dg~i~~~d~~~~~~~~-----------~  212 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVS-GSLDTSIRVWDVETGNCIH-----------T  212 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEE-EETTSCEEEEETTTCCEEE-----------E
T ss_pred             cceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEE-EeCCCeEEEeecccceeee-----------E
Confidence                      00  0000111222334445544444  4556777776 5589999999999887655           3


Q ss_pred             ccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec-eeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          270 KETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC-RIESFYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                      ...|...+.++.+++  ++|++++.||.|++||+....  ....+..+ .....+.++.+  +++++++|+.||.|++||
T Consensus       213 ~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         213 LTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWD  286 (342)
T ss_dssp             ECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEE
T ss_pred             ecccccceeEEecCC--CEEEEEcCCCEEEEEeccccc--ccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEE
Confidence            556667788877764  699999999999999986633  23333332 22334445555  567999999999999999


Q ss_pred             cCCCCCCCcee-----ccccCCeEEEEeCCCCCCeEEEEeCCCc----EEEEeCCC
Q 010390          349 VNKPQADPIKL-----KSHDGEVTAVNWCPNEAGKIVTSSDDYT----VRLWSLEN  395 (512)
Q Consensus       349 ~~~~~~~~~~~-----~~h~~~v~~v~~~~~~~~~l~s~~~dg~----i~vwd~~~  395 (512)
                      +++++.. ..+     .+|.+.|++++|+|++ .+|++|+.||+    |++||++.
T Consensus       287 ~~tg~~i-~~~~~~~~~~~~~~v~~v~~s~~~-~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         287 LKTGEFI-RNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TTTCCEE-EEEEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCCCEE-EEEecccCCCCCCCEEEEEECCCC-CEEEEEeCCCCCeeEEEEEeCCC
Confidence            9988753 333     3678899999999999 89999999985    99999874

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-33  Score=252.66  Aligned_cols=274  Identities=17%  Similarity=0.189  Sum_probs=210.3

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      +.+...++||.++|.+|+|   +|    |++|+.||.|++||+.+.                  ..+|...|.+++++++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~---s~----l~sgs~Dg~v~~Wd~~~~------------------~~~h~~~V~~~~~~~~   57 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTV---NP----LISGSYDGRIMEWSSSSM------------------HQDHSNLIVSLDNSKA   57 (287)
T ss_dssp             EEEEEEECCCSSCEEEEET---TT----TEEEETTSCEEETTTTEE------------------ECCCCSCEEEEECCST
T ss_pred             cceeEEECCCCCceEEEEE---Cc----EEEEeCCCeEEEEECCCC------------------CCCCCCCEEEEEecCC
Confidence            4677889999999999998   76    999999999999998543                  2579999999999865


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                       ..+++++.|++|++|++...+       ....+.++++.+++ ..+++ +.++.+.+|+..+++.....          
T Consensus        58 -~~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~----------  117 (287)
T d1pgua2          58 -QEYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDG-FTAVL-TNDDDLLILQSFTGDIIKSV----------  117 (287)
T ss_dssp             -TCCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSS-EEEEE-ETTSEEEEEETTTCCEEEEE----------
T ss_pred             -CeEEEEeeccccccccccccc-------cccceeeeeeccCC-ceEEE-eecccceeeeccceeeeeec----------
Confidence             568999999999999975432       23457788888865 44444 55677889988765432211          


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                        ..  .....++++++..+++++..++.+++|++.........          ...+...+++
T Consensus       118 ------------------~~--~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~v~~  167 (287)
T d1pgua2         118 ------------------RL--NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL----------KTPLRAKPSY  167 (287)
T ss_dssp             ------------------EC--SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC----------SSCCSSCEEE
T ss_pred             ------------------cc--cceeeeeeccCcceeeeccccceeeeeeccccceeeee----------eeccCCceeE
Confidence                              11  12234567888888886755568999999876554432          3345567999


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC----------CCEEEEecCCCCEEEEec
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN----------ASHILSGSSDGNAYVWQV  349 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------~~~l~~g~~dg~i~iw~~  349 (512)
                      ++|+|++.+|++++.||.|++||+.+... ....+..|  ...+.+++|+|.          +.+|++|+.|+.|++||+
T Consensus       168 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~h--~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~  244 (287)
T d1pgua2         168 ISISPSETYIAAGDVMGKILLYDLQSREV-KTSRWAFR--TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  244 (287)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEE-EECCSCCC--SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             EEeccCccccccccccccccceeeccccc-cccccccc--ccccceeeecccccccccccCCCCeeEeecCCCeEEEEEC
Confidence            99999999999999999999999865321 11112222  345778888764          568999999999999999


Q ss_pred             CCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          350 NKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       350 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      .+.......+.+|.+.|++++|+|++  .|+|++.||.|++|++
T Consensus       245 ~~~~~~~~~~~~h~~~V~~v~~~~~~--~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         245 KRPMKIIKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCTTCCEEETTSSTTCEEEEEEEETT--EEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEeCCCCCCeEEEEECCCC--EEEEEECCCeEEEEEE
Confidence            88766666778999999999999976  6999999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-32  Score=252.29  Aligned_cols=261  Identities=17%  Similarity=0.258  Sum_probs=209.9

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      +..+++++|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++ .++++++.|+.+++|
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIY  124 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccc-eeeeeecccceeecc
Confidence            4467789999999999999999999999999999999999999999999999999999999988 899999999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      +.........                       ....+..|...........+ ..+.. ...+.....++........ 
T Consensus       125 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~-  178 (340)
T d1tbga_         125 NLKTREGNVR-----------------------VSRELAGHTGYLSCCRFLDD-NQIVT-SSGDTTCALWDIETGQQTT-  178 (340)
T ss_dssp             ESSSSCSCCC-----------------------EEEEECCCSSCEEEEEEEET-TEEEE-EETTTEEEEEETTTTEEEE-
T ss_pred             cccccccccc-----------------------cceecccccccccccccccc-ccccc-ccccccccccccccccccc-
Confidence            9876543221                       11133344555555554444 34444 3468888888887665443 


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG  338 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g  338 (512)
                                ....+...+....+.+.+.++++++.|+.|++||+++.  ..+..+.++  ...+.+++|+|++++|++|
T Consensus       179 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~--~~~~~~~~h--~~~i~~v~~~p~~~~l~s~  244 (340)
T d1tbga_         179 ----------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG--MCRQTFTGH--ESDINAICFFPNGNAFATG  244 (340)
T ss_dssp             ----------EEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--EEEEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred             ----------cccccceeEeeeccccccceeEEeecCceEEEEECCCC--cEEEEEeCC--CCCeEEEEECCCCCEEEEE
Confidence                      34455567889999999999999999999999998653  344555544  3568899999999999999


Q ss_pred             cCCCCEEEEecCCCCCCC-ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          339 SSDGNAYVWQVNKPQADP-IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       339 ~~dg~i~iw~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      +.||.|++|++....... .....|...|++++|+|++ .+|++|+.||.|++||+.+++++..
T Consensus       245 s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~g~~dg~i~iwd~~~~~~~~~  307 (340)
T d1tbga_         245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGV  307 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS-CEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             eCCCeEEEEeecccccccccccccccCceEEEEECCCC-CEEEEEECCCEEEEEECCCCcEEEE
Confidence            999999999998765522 1234567789999999999 8999999999999999999887665

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-33  Score=253.99  Aligned_cols=261  Identities=15%  Similarity=0.138  Sum_probs=196.1

Q ss_pred             EeecCCc-cCCcceEEEEEecC--CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           43 TVEHHGE-ETPPLAVSFCKTSK--NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        43 ~~~~~gh-~~~v~~v~~~~~s~--~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      ...+.|| ..+|++++|   +|  +|.+||+|+.||.|+|||+........     ........+..|.++|.+++|+++
T Consensus        55 ~~~~~gh~~~~v~~v~f---sP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~-----~~~~~~~~~~~~~~~v~~v~~s~~  126 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKF---SPIKGSQYLCSGDESGKVIVWGWTFDKESNS-----VEVNVKSEFQVLAGPISDISWDFE  126 (325)
T ss_dssp             EEEECTTTTSCEEEEEE---CSSTTCCEEEEEETTSEEEEEEEEEEGGGTE-----EEEEEEEEEECCSSCEEEEEECTT
T ss_pred             eEEEeCCCCCCEEEEEE---eeCCCCCEEEEEeCCCCEEEeeecCCcceee-----eecccccccccccCcEEEEEECCC
Confidence            4456677 467999999   87  667999999999999999876543211     111223345678999999999999


Q ss_pred             CCEEEEEeC--CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390          120 DTNILTASG--DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       120 ~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                      +++|++++.  ++.+++|++++++++..+.+|...|++++|+|+++.++++++.|+.+++||....+...          
T Consensus       127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~----------  196 (325)
T d1pgua1         127 GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA----------  196 (325)
T ss_dssp             SSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE----------
T ss_pred             CCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccce----------
Confidence            999987664  67899999999999999999999999999999986678899999999999986543211          


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                    .......|...|.+++|+|++..++++++.|+.|++||+++++....           +..|...+
T Consensus       197 --------------~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------l~~~~~~v  251 (325)
T d1pgua1         197 --------------SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY-----------IEDDQEPV  251 (325)
T ss_dssp             --------------EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE-----------CCBTTBCC
T ss_pred             --------------ecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccc-----------cccccccc
Confidence                          11123466778999999998655555567899999999998876653           34455555


Q ss_pred             eEEEeC---CCCCEEEEEecCCeEEEEEcccCCCCceEeeeece--eceeEEEEEECCCCCEEEEecCCCCEEEEec
Q 010390          278 SSLSQD---SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR--IESFYVKSEICPNASHILSGSSDGNAYVWQV  349 (512)
Q Consensus       278 ~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~  349 (512)
                      ..+.|+   +++++|++++.|+.|++||+...  ..+..+..+.  ......++.+.++ .+|++|+.||.|++||+
T Consensus       252 ~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         252 QGGIFALSWLDSQKFATVGADATIRVWDVTTS--KCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CSCEEEEEESSSSEEEEEETTSEEEEEETTTT--EEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             ccceeeeeccCCCEEEEEeCCCeEEEEECCCC--CEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            554444   68899999999999999999764  3444444333  2233334444433 47889999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-32  Score=243.38  Aligned_cols=275  Identities=19%  Similarity=0.306  Sum_probs=206.8

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT  125 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  125 (512)
                      +.+|...|+|++     +||++||+|+.||.|+|||+++++             .+..+.+|.+.|++++|  ++++|++
T Consensus        11 ~~~~~~~V~c~~-----~d~~~l~sgs~Dg~i~vWd~~~~~-------------~~~~l~~H~~~V~~v~~--~~~~l~s   70 (293)
T d1p22a2          11 RSETSKGVYCLQ-----YDDQKIVSGLRDNTIKIWDKNTLE-------------CKRILTGHTGSVLCLQY--DERVIIT   70 (293)
T ss_dssp             CCSSCCCEEEEE-----CCSSEEEEEESSSCEEEEESSSCC-------------EEEEECCCSSCEEEEEC--CSSEEEE
T ss_pred             cCCCCCCEEEEE-----EcCCEEEEEeCCCeEEEEECCCCc-------------EEEEEecCCCCEeeeec--ccceeec
Confidence            345666666654     489999999999999999998764             37788999999999987  6789999


Q ss_pred             EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       126 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      |+.|+.|++|++..+........+......  +.+.. ..++++..++.+.+||........                  
T Consensus        71 ~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------------  129 (293)
T d1p22a2          71 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LRFNN-GMMVTCSKDRSIAVWDMASPTDIT------------------  129 (293)
T ss_dssp             EETTSCEEEEESSSCCEEEEECCCCSCEEE--EECCT-TEEEEEETTSCEEEEECSSSSCCE------------------
T ss_pred             cccccccccccccccccccccccccccccc--ccccc-cceeecccccceeEeecccccccc------------------
Confidence            999999999999999877776655544443  33434 689999999999999988654322                  


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN  285 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  285 (512)
                            .......|...+..+.+.+  ..+++ ++.|+.|++||.++.+...           ....+...+..+.++  
T Consensus       130 ------~~~~~~~~~~~v~~~~~~~--~~~~~-~s~d~~i~~~d~~~~~~~~-----------~~~~~~~~v~~~~~~--  187 (293)
T d1p22a2         130 ------LRRVLVGHRAAVNVVDFDD--KYIVS-ASGDRTIKVWNTSTCEFVR-----------TLNGHKRGIACLQYR--  187 (293)
T ss_dssp             ------EEEEECCCSSCEEEEEEET--TEEEE-EETTSEEEEEETTTCCEEE-----------EEECCSSCEEEEEEE--
T ss_pred             ------ccccccccccccccceecc--ccccc-ccCCCceeeecCCCCcEEE-----------EEcccccccccccCC--
Confidence                  1123345566777766654  34454 4579999999999887655           344555667776665  


Q ss_pred             CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC--------CCCc
Q 010390          286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ--------ADPI  357 (512)
Q Consensus       286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~--------~~~~  357 (512)
                      +.++++++.||.|++||++..  ..+....++..  .+  ..+++++.+|++|+.||.|++||+....        ....
T Consensus       188 ~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~--~v--~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~  261 (293)
T d1p22a2         188 DRLVVSGSSDNTIRLWDIECG--ACLRVLEGHEE--LV--RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR  261 (293)
T ss_dssp             TTEEEEEETTSCEEEEETTTC--CEEEEECCCSS--CE--EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred             CCeEEEecCCCEEEEEecccc--eeeeeecccce--ee--eeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeE
Confidence            568999999999999998753  33444443322  22  3466788999999999999999986432        1234


Q ss_pred             eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390          358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS  392 (512)
Q Consensus       358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd  392 (512)
                      .+.+|.+.|++++|+  + .+|+|+|.||+|+|||
T Consensus       262 ~~~~H~~~V~~v~~d--~-~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         262 TLVEHSGRVFRLQFD--E-FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EECCCSSCCCCEEEC--S-SCEEECCSSSEEEEEC
T ss_pred             EecCCCCCEEEEEEc--C-CEEEEEecCCEEEEeC
Confidence            678899999999995  4 6899999999999998

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-32  Score=248.88  Aligned_cols=308  Identities=11%  Similarity=0.091  Sum_probs=216.1

Q ss_pred             eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC-
Q 010390           42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED-  120 (512)
Q Consensus        42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-  120 (512)
                      ++...++|.+.|++|+|   +|++++||+|+.||+|+|||++....          ...+....+|.++|.+++|+|++ 
T Consensus         3 ~v~~~~~h~d~I~~l~f---sp~~~~L~s~s~Dg~v~iwd~~~~~~----------~~~~~~~~~h~~~V~~v~f~~~~~   69 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKI---IPSKSLLLITSWDGSLTVYKFDIQAK----------NVDLLQSLRYKHPLLCCNFIDNTD   69 (342)
T ss_dssp             EEECSSCCSSCEEEEEE---EGGGTEEEEEETTSEEEEEEEETTTT----------EEEEEEEEECSSCEEEEEEEESSS
T ss_pred             eEEcCCCCCCCEEEEEE---eCCCCEEEEEECCCeEEEEEccCCCc----------ceEEEEecCCCCCEEEEEEeCCCC
Confidence            34567899999999999   99999999999999999999976532          12233445799999999999964 


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEE-EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIK-SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                      .+|++|+.||.|++|++..+........+...+. ...+.+.. ..+++++.|+.+++||++...........       
T Consensus        70 ~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~-------  141 (342)
T d1yfqa_          70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKN-------  141 (342)
T ss_dssp             EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEE-------
T ss_pred             CEEEEcccccceeeeeccccccccccccccccccccccccccc-ccccccccccccceeeccccccceeeecc-------
Confidence            5788999999999999998877666655554443 34444444 89999999999999998754432211000       


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                    ..............+.+.+..+++ ++.|+.|++||++.........        ........+.+
T Consensus       142 --------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~  198 (342)
T d1yfqa_         142 --------------LNSNNTKVKNKIFTMDTNSSRLIV-GMNNSQVQWFRLPLCEDDNGTI--------EESGLKYQIRD  198 (342)
T ss_dssp             --------------SCSSSSSSCCCEEEEEECSSEEEE-EESTTEEEEEESSCCTTCCCEE--------EECSCSSCEEE
T ss_pred             --------------cccccccceeeeeeeeccCCceee-ecCCCcEEEEecccCcccceee--------eecccccceee
Confidence                          001111223445667777877776 5589999999998766543221        11222233445


Q ss_pred             EEe-CCCCCEEEEEecCCeEEEEEcccCCCCc----eEeee-------eceeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390          280 LSQ-DSNGVFLTASCMDHRIYLYNVLQLDKGP----IQHFS-------GCRIESFYVKSEICPNASHILSGSSDGNAYVW  347 (512)
Q Consensus       280 ~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~-------~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  347 (512)
                      ..+ ..++..+++++.||.+.+|+........    ...+.       .......+.+++|+|++++|++|+.||.|++|
T Consensus       199 ~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vW  278 (342)
T d1yfqa_         199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             eEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEE
Confidence            444 4567889999999999999975432211    11111       11123357789999999999999999999999


Q ss_pred             ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          348 QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       348 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      |+.+++.. ..+..+ ..+..++|+|++ .+|++++.|+.+++|.....
T Consensus       279 D~~~~~~l-~~~~~~-~~~~~~~~s~~~-~~l~~a~sdd~~~~~~~~~~  324 (342)
T d1yfqa_         279 NLQTRKKI-KNFAKF-NEDSVVKIACSD-NILCLATSDDTFKTNAAIDQ  324 (342)
T ss_dssp             ETTTTEEE-EECCCC-SSSEEEEEEECS-SEEEEEEECTHHHHCSSSCT
T ss_pred             ECCCCcEE-EEecCC-CCCEEEEEEeCC-CEEEEEEcCCcEEEeeeeCC
Confidence            99987653 344322 345567778888 78999988988988876543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-31  Score=252.76  Aligned_cols=308  Identities=16%  Similarity=0.154  Sum_probs=209.0

Q ss_pred             eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe---c--
Q 010390           44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI---K--  118 (512)
Q Consensus        44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s---~--  118 (512)
                      ...+||.+.|++|++   +  +++|++|+.|+.|+|||..........       ........|...+..+...   +  
T Consensus         8 ~~~~~H~~~I~~v~~---~--~~~l~S~S~D~~iriWd~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~   75 (393)
T d1sq9a_           8 NAGKAHDADIFSVSA---C--NSFTVSCSGDGYLKVWDNKLLDNENPK-------DKSYSHFVHKSGLHHVDVLQAIERD   75 (393)
T ss_dssp             EESSCSSSCEEEEEE---C--SSEEEEEETTSEEEEEESBCCTTCCGG-------GGEEEEECCTTCEEEEEEEEEEETT
T ss_pred             ecCCcccCccEEEEE---e--CCEEEEEECCCeEEEEECCCCCCCccc-------ceeEeeeeccCCceEeeeEeeeccC
Confidence            345899999999987   4  479999999999999998765432211       1122333455544433322   1  


Q ss_pred             --CCCEEEEEeCCCcEEEEeCCCCeeeec----------ccCcCCCEEEEEeeCCC----CCeEEEEeCCCcEEEEeCCC
Q 010390          119 --EDTNILTASGDQTIKIWDAEKKKCTGA----------LMGHTGSIKSLCSHPTN----SDILVSGSRDGSFAIWDLRC  182 (512)
Q Consensus       119 --~~~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~h~~~v~~l~~~~~~----~~~l~s~~~dg~i~vwd~~~  182 (512)
                        ++.++++++.||.|++|++........          ...+...+..++|.++.    ..++++++.||.+++|++..
T Consensus        76 ~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~  155 (393)
T d1sq9a_          76 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  155 (393)
T ss_dssp             TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeec
Confidence              234677999999999999765432211          12355678888888754    25789999999999999864


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~  262 (512)
                      ............         ...............+...+.+++|+|++ .++ +|+.|+.|++||+.+++........
T Consensus       156 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~la-sgs~Dg~i~iwd~~~~~~~~~~~~~  224 (393)
T d1sq9a_         156 FADESNSLTLNW---------SPTLELQGTVESPMTPSQFATSVDISERG-LIA-TGFNNGTVQISELSTLRPLYNFESQ  224 (393)
T ss_dssp             SSSHHHHTTTCC---------CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE-EECTTSEEEEEETTTTEEEEEEECC
T ss_pred             CCcccceeeeee---------ccceecccceecccCCCCcEEEEEECCCC-EEE-EEeCCCcEEEEeecccccccccccc
Confidence            332110000000         00000011111233455668999999987 444 5778999999999988766544322


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEEecCC---eEEEEEcccCCCCceEeeee-----------ceeceeEEEEEE
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDH---RIYLYNVLQLDKGPIQHFSG-----------CRIESFYVKSEI  328 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  328 (512)
                      .     .+..|..+|.+++|+|+|++|++|+.|+   .|++||+.....  +..+..           ..+...|.+++|
T Consensus       225 ~-----~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~--~~~l~~~~~~~~~~~~~~gH~~~V~~l~f  297 (393)
T d1sq9a_         225 H-----SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSF  297 (393)
T ss_dssp             C--------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSCEEEEEE
T ss_pred             c-----ccccccceEEEcccccccceeeeecCCCCcceeeeccccccee--eeeeccccccccceeeeecccCceeeecc
Confidence            2     4667889999999999999999999887   599999876432  222211           123456899999


Q ss_pred             CCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeE----EEEeCCCCCCeEEEEe
Q 010390          329 CPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVT----AVNWCPNEAGKIVTSS  383 (512)
Q Consensus       329 s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~----~v~~~~~~~~~l~s~~  383 (512)
                      +|++++|++|+.|++|+|||+.+++. +..+.+|.+.|.    .++|++++ ..+++++
T Consensus       298 spd~~~l~S~s~D~~v~vWd~~~g~~-~~~l~gH~~~v~~~~~~~~~~~~~-~~~~~~~  354 (393)
T d1sq9a_         298 NDSGETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDILAVDEHG-DSLAEPG  354 (393)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCGGGCSSGGGCCCBCTTS-CBCSSCC
T ss_pred             CCCCCeeEEECCCCEEEEEECCCCCE-EEEECCcCCcccCCccEEEECCCC-CEEEEcc
Confidence            99999999999999999999999876 578899987775    47788887 5665444

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-31  Score=244.11  Aligned_cols=287  Identities=17%  Similarity=0.260  Sum_probs=213.9

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      +.+...+.+|.++|.+|+|   +|+ ++|++|+.||.|++|+......           ........+...+..+.+.++
T Consensus        43 ~~~~~~l~~H~~~V~~l~~---s~~-~~l~s~s~D~~i~iw~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  107 (355)
T d1nexb2          43 KKFLLQLSGHDGGVWALKY---AHG-GILVSGSTDRTVRVWDIKKGCC-----------THVFEGHNSTVRCLDIVEYKN  107 (355)
T ss_dssp             TEEEEEEECCSSCEEEEEE---ETT-TEEEEEETTCCEEEEETTTTEE-----------EEEECCCSSCEEEEEEEEETT
T ss_pred             CcEEEEEECCCCCEEEEEE---cCC-CEEEEEeccccccccccccccc-----------ccccccccccccccccccccc
Confidence            4667788999999999999   775 5899999999999999876532           112223344455667778889


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeec-----------------------ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGA-----------------------LMGHTGSIKSLCSHPTNSDILVSGSRDGSFA  176 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------------~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  176 (512)
                      +.++++++.|+.|++||+.+......                       ...|...+...  .+++ ++++++..|+.|+
T Consensus       108 ~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~~~~~~~d~~i~  184 (355)
T d1nexb2         108 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLI  184 (355)
T ss_dssp             EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEE--EEET-TEEEEEETTSCEE
T ss_pred             cceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccc--cccc-ceeeeecccceee
Confidence            99999999999999999987643321                       12244444443  3444 8999999999999


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ  256 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~  256 (512)
                      +||+++++..                           .....+...+.++.+++++..+++ ++.|+.|++||++++...
T Consensus       185 ~~d~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         185 VWDVAQMKCL---------------------------YILSGHTDRIYSTIYDHERKRCIS-ASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             EEETTTTEEE---------------------------EEECCCSSCEEEEEEETTTTEEEE-EETTSCEEEEETTTCCEE
T ss_pred             eeecccccce---------------------------eeeeccccccccccccccceeeec-ccccceEEeeeccccccc
Confidence            9999865322                           233455678899999999998887 458999999999988766


Q ss_pred             ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390          257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL  336 (512)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  336 (512)
                      .           ....|...|.++++++  ++|++++.||.|++||+.+..    ..+..+... ......+++++++|+
T Consensus       237 ~-----------~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~-~~~~~~~~~~~~~l~  298 (355)
T d1nexb2         237 Y-----------TLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS----RKFSYHHTN-LSAITTFYVSDNILV  298 (355)
T ss_dssp             E-----------EECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC----EEEEEECTT-CCCCCEEEECSSEEE
T ss_pred             c-----------cccccccccccccccc--ceeeeeecccccccccccccc----eecccccCC-ceEEEEEcCCCCEEE
Confidence            5           4667788899999974  689999999999999986532    222222211 111235677888777


Q ss_pred             EecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       337 ~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      +|+ |+.|++||+++++.....+.+|.+.|++++|+|+  .++++++.||.++||.+
T Consensus       299 ~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         299 SGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT--EEEEEEESSSCEEEEEE
T ss_pred             EEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC--eEEEEEECCCcEEEEEE
Confidence            765 8899999999988765567889999999999986  48889999998776543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-31  Score=243.34  Aligned_cols=270  Identities=11%  Similarity=0.053  Sum_probs=194.7

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee---cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG---ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFA  176 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  176 (512)
                      .+...++|++.|++|+|+|++++|++|+.||+|+|||+.++....   ...+|..+|.+++|+|+++.+|++|+.||.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            366678999999999999999999999999999999997664322   23369999999999998767999999999999


Q ss_pred             EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390          177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ  256 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~  256 (512)
                      +|++.........                          ...+........+.++...+++ ++.++.+++||++.....
T Consensus        83 ~w~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~wd~~~~~~~  135 (342)
T d1yfqa_          83 KVDLIGSPSFQAL--------------------------TNNEANLGICRICKYGDDKLIA-ASWDGLIEVIDPRNYGDG  135 (342)
T ss_dssp             EECSSSSSSEEEC--------------------------BSCCCCSCEEEEEEETTTEEEE-EETTSEEEEECHHHHTTB
T ss_pred             eeecccccccccc--------------------------cccccccccccccccccccccc-cccccccceeeccccccc
Confidence            9999865432211                          1122223344555666666666 558999999999865543


Q ss_pred             ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390          257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL  336 (512)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  336 (512)
                      .......     ...........+.+.+++..+++++.|+.|++||+........................+..++..++
T Consensus       136 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (342)
T d1yfqa_         136 VIAVKNL-----NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA  210 (342)
T ss_dssp             CEEEEES-----CSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE
T ss_pred             eeeeccc-----ccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEE
Confidence            3221111     11112233456677788899999999999999999765544333332222222223334455678899


Q ss_pred             EecCCCCEEEEecCCCCCCC--------------ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          337 SGSSDGNAYVWQVNKPQADP--------------IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       337 ~g~~dg~i~iw~~~~~~~~~--------------~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      +++.||.+.+|++.......              .....|...|++++|+|++ .+|+||+.||.|++||+++++++..+
T Consensus       211 ~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             eecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc-cEEEEECCCCEEEEEECCCCcEEEEe
Confidence            99999999999986543211              1224567789999999999 89999999999999999999887654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.6e-30  Score=243.51  Aligned_cols=279  Identities=11%  Similarity=0.169  Sum_probs=189.7

Q ss_pred             eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee------ecccCcCCCEEEEE------eeCCCCCeEEE
Q 010390          101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT------GALMGHTGSIKSLC------SHPTNSDILVS  168 (512)
Q Consensus       101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~h~~~v~~l~------~~~~~~~~l~s  168 (512)
                      ....++|.+.|++++++  +++|+|++.|++|+|||..+.+..      .....|...+..+.      .......++++
T Consensus         7 ~~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EEESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             eecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            34457999999999986  469999999999999997655321      11223444433322      22222247889


Q ss_pred             EeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecC-----CEEEEEeecCC
Q 010390          169 GSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE-----VSIATASAVNS  243 (512)
Q Consensus       169 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~g~~dg  243 (512)
                      ++.||.|++|++.............                 ........+...+..++|.++.     ..+++ ++.||
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dg  146 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEK-----------------LDLLDSDMKKHSFWALKWGASNDRLLSHRLVA-TDVKG  146 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEE-----------------ECCSCTTGGGSCEEEEEEECCC----CEEEEE-EETTS
T ss_pred             EeCCCcEEEEEccCCCceeeeeccc-----------------cceeeeccCCCceEEEEEecCCCcccccEEEE-EcCCC
Confidence            9999999999987655433221110                 0011122344567778887654     34444 55899


Q ss_pred             eEEEEeccCccceecccCCCc-------cccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee
Q 010390          244 IVKFWDTRNLKAQITQAWPHA-------ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG  316 (512)
Q Consensus       244 ~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  316 (512)
                      .+++|++..............       ........+...+.+++|+|++ +|++|+.||.|++||+.+..  .+..+..
T Consensus       147 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~--~~~~~~~  223 (393)
T d1sq9a_         147 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR--PLYNFES  223 (393)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE--EEEEEEC
T ss_pred             cEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccc--ccccccc
Confidence            999999864332111111000       0011223344568899999998 88999999999999987643  2332222


Q ss_pred             ----ceeceeEEEEEECCCCCEEEEecCCCC---EEEEecCCCCCC------------CceeccccCCeEEEEeCCCCCC
Q 010390          317 ----CRIESFYVKSEICPNASHILSGSSDGN---AYVWQVNKPQAD------------PIKLKSHDGEVTAVNWCPNEAG  377 (512)
Q Consensus       317 ----~~~~~~~~~~~~s~~~~~l~~g~~dg~---i~iw~~~~~~~~------------~~~~~~h~~~v~~v~~~~~~~~  377 (512)
                          ..+...|.+++|+|++++|++|+.|++   |++||+.+++..            ...+.+|.+.|++++|+|++ +
T Consensus       224 ~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~  302 (393)
T d1sq9a_         224 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-E  302 (393)
T ss_dssp             CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS-S
T ss_pred             ccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC-C
Confidence                123467899999999999999998875   999999876531            12335899999999999999 8


Q ss_pred             eEEEEeCCCcEEEEeCCCCccccccc
Q 010390          378 KIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       378 ~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      +|+|||.|++|+|||+++++++.++.
T Consensus       303 ~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         303 TLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eeEEECCCCEEEEEECCCCCEEEEEC
Confidence            99999999999999999999887643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=239.14  Aligned_cols=274  Identities=21%  Similarity=0.355  Sum_probs=188.9

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      +....+++|.+.|.+ +++++|++|+||+.||+|+|||+.+++++.++.+|.+.|.+++|++   ++|++++.|+.+++|
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~   82 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVW   82 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC---Cccccceeccccccc
Confidence            446778999999865 4667899999999999999999999999999999999999999986   589999999999999


Q ss_pred             eCCCCCCCCCccccceeeec-ccccc----------cc--cccccccceecccccccEEEEEEeecCCEEEEEeecCCeE
Q 010390          179 DLRCKSSPKSNCAESFVFSS-AVVKG----------AH--LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIV  245 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~-~~~~~----------~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i  245 (512)
                      +................... .....          ..  .............  .......+......++. ++.|+.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~d~~i  159 (342)
T d2ovrb2          83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMG--HVAAVRCVQYDGRRVVS-GAYDFMV  159 (342)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEEC--CSSCEEEEEECSSCEEE-EETTSCE
T ss_pred             ccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeec--ccccceeeccccceeee-ecCCCeE
Confidence            98765432211111000000 00000          00  0000000111111  11122233445555555 5589999


Q ss_pred             EEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEE
Q 010390          246 KFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVK  325 (512)
Q Consensus       246 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  325 (512)
                      ++||.+.......           ...|...+  ..+.+++.++++++.||.|++||+...  ..+..+..+.  ..+.+
T Consensus       160 ~~~d~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~--~~~~~~~~~~--~~v~~  222 (342)
T d2ovrb2         160 KVWDPETETCLHT-----------LQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETG--NCIHTLTGHQ--SLTSG  222 (342)
T ss_dssp             EEEEGGGTEEEEE-----------ECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTC--CEEEEECCCC--SCEEE
T ss_pred             EEeecccceeeEE-----------EcCccccc--ccccCCCCEEEEEeCCCeEEEeecccc--eeeeEecccc--cceeE
Confidence            9999987766542           33444444  445557889999999999999998763  3444555443  33545


Q ss_pred             EEECCCCCEEEEecCCCCEEEEecCCCCCCCcee---ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          326 SEICPNASHILSGSSDGNAYVWQVNKPQADPIKL---KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       326 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      +++  ++++|++|+.|+.|++||+...+.. ..+   ..|...+.++.+++   .++++|+.||.|++||++++++++.+
T Consensus       223 ~~~--~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         223 MEL--KDNILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             EEE--ETTEEEEEETTSCEEEEETTTCCEE-EEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             Eec--CCCEEEEEcCCCEEEEEeccccccc-ccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEE
Confidence            554  5679999999999999999877652 333   34667888888865   68999999999999999999887654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=3.5e-30  Score=240.43  Aligned_cols=278  Identities=12%  Similarity=0.038  Sum_probs=207.4

Q ss_pred             ecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC--cEEEEeC
Q 010390           61 TSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ--TIKIWDA  137 (512)
Q Consensus        61 ~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg--~i~iwd~  137 (512)
                      ||| ||+++|+++ +|.|++||++++.              +..+ +|...|.+++|+|||++|++++.+.  .|++||+
T Consensus        10 fSP~dG~~~a~~~-~g~v~v~d~~~~~--------------~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~   73 (360)
T d1k32a3          10 FSPLDGDLIAFVS-RGQAFIQDVSGTY--------------VLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY   73 (360)
T ss_dssp             EEECGGGCEEEEE-TTEEEEECTTSSB--------------EEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEET
T ss_pred             ccCCCCCEEEEEE-CCeEEEEECCCCc--------------EEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEEC
Confidence            399 999999987 5799999997653              2222 6899999999999999999776553  7999999


Q ss_pred             CCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc
Q 010390          138 EKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK  217 (512)
Q Consensus       138 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (512)
                      ++++.. .+..|...|.+++|+|++ ++|++++.++.+++|++.+++..                           ....
T Consensus        74 ~~~~~~-~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~---------------------------~~~~  124 (360)
T d1k32a3          74 RTGKAE-KFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT---------------------------VIER  124 (360)
T ss_dssp             TTCCEE-ECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE---------------------------EEEE
T ss_pred             CCCcEE-EeeCCCceEEeeeecccc-cccceecccccccccccccccee---------------------------eeee
Confidence            887655 466799999999999998 89999999999999999865432                           2344


Q ss_pred             cccccEEEEEEeecCCEEEEEee---------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390          218 AASMSITSVLYLKDEVSIATASA---------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       218 ~~~~~v~~~~~~~~~~~l~~~g~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                      .+...+.+++|+|+++.++.+..         .++.+++||+.+++...            ...+...+..+.|+|+|++
T Consensus       125 ~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~------------~~~~~~~~~~~~~spdg~~  192 (360)
T d1k32a3         125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA------------ATTENSHDYAPAFDADSKN  192 (360)
T ss_dssp             CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE------------CSCSSSBEEEEEECTTSCE
T ss_pred             cccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee------------ecccccccccccccCCCCE
Confidence            56678899999999999987542         34579999998876543            3344566888999999999


Q ss_pred             EEEEecCCeEEEEEcccCCCC-----ceEeeeec----------------------------------eeceeEEEEEEC
Q 010390          289 LTASCMDHRIYLYNVLQLDKG-----PIQHFSGC----------------------------------RIESFYVKSEIC  329 (512)
Q Consensus       289 l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~----------------------------------~~~~~~~~~~~s  329 (512)
                      |++++.++.+.+||.......     .......+                                  ........+...
T Consensus       193 l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (360)
T d1k32a3         193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL  272 (360)
T ss_dssp             EEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEEC
T ss_pred             EEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeec
Confidence            999999999999985321100     00000000                                  000011122222


Q ss_pred             CC-------------CCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390          330 PN-------------ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       330 ~~-------------~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~  396 (512)
                      ++             +.++++++.++.|++||+.+++.     ..|.+.|.+++|+||| ++|++++.||.|++||++.+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~v~~~~~SpDG-~~l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-----TEVKNNLTDLRLSADR-KTVMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-----EEEEEEEEEEEECTTS-CEEEEEETTSCEEEEESSCT
T ss_pred             CCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE-----EEecCCcCEEEECCCC-CEEEEEECCCeEEEEECCCC
Confidence            22             23456667788999999987543     3455679999999999 89999999999999999998


Q ss_pred             ccccc
Q 010390          397 RCSSM  401 (512)
Q Consensus       397 ~~~~~  401 (512)
                      +...+
T Consensus       347 ~~~~~  351 (360)
T d1k32a3         347 EDERT  351 (360)
T ss_dssp             TSCEE
T ss_pred             CcceE
Confidence            87665

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.4e-29  Score=224.76  Aligned_cols=235  Identities=13%  Similarity=0.157  Sum_probs=182.1

Q ss_pred             cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390           99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus        99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      ++++++++|.++|++++|+|    |+||+.||+|++||+.++.     .+|...|.++++++.  ..+++++.|++|++|
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~--~~~~s~s~D~~v~~w   72 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKA--QEYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCST--TCCEEEETTTEEEET
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCC--CeEEEEeeccccccc
Confidence            55888999999999999987    9999999999999987653     579999999999874  568999999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      ++...+                                  ....+..+.+++++..+++ + .++.+.+|+..++.....
T Consensus        73 ~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~  116 (287)
T d1pgua2          73 GITKHE----------------------------------FGSQPKVASANNDGFTAVL-T-NDDDLLILQSFTGDIIKS  116 (287)
T ss_dssp             TEEEEE----------------------------------CSSCEEEEEECSSSEEEEE-E-TTSEEEEEETTTCCEEEE
T ss_pred             cccccc----------------------------------cccceeeeeeccCCceEEE-e-ecccceeeeccceeeeee
Confidence            976321                                  1235677888888777765 3 477899999888776543


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC-eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH-RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS  337 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  337 (512)
                      ..            .  .....++++++..+++++.++ .+++|++.....  ...+ .......+.+++|+|++.+|++
T Consensus       117 ~~------------~--~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~--~~~~-~~~~~~~v~~~~~s~~~~~l~~  179 (287)
T d1pgua2         117 VR------------L--NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV--SFDL-KTPLRAKPSYISISPSETYIAA  179 (287)
T ss_dssp             EE------------C--SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE--EEEC-SSCCSSCEEEEEECTTSSEEEE
T ss_pred             cc------------c--cceeeeeeccCcceeeeccccceeeeeeccccce--eeee-eeccCCceeEEEeccCcccccc
Confidence            21            1  123345667788888888765 799999854321  1111 1223445888999999999999


Q ss_pred             ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCC---------CCeEEEEeCCCcEEEEeCCCCc
Q 010390          338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE---------AGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~---------~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      |+.||.|++||+.+.......+.+|...|.+++|+|.+         ..+|++|+.|+.|++||++++.
T Consensus       180 g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~  248 (287)
T d1pgua2         180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  248 (287)
T ss_dssp             EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             ccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence            99999999999988765444567899999999998753         2589999999999999997643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-26  Score=206.20  Aligned_cols=246  Identities=19%  Similarity=0.335  Sum_probs=183.3

Q ss_pred             ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390          100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD  179 (512)
Q Consensus       100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd  179 (512)
                      .+.....|...|+|++|  ++++||||+.||+|+|||+.+++++.++.+|.+.|++++|.  + ++|++|+.|+.|++|+
T Consensus         7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~   81 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD--E-RVIITGSSDSTVRVWD   81 (293)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEE
T ss_pred             EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc--c-ceeecccccccccccc
Confidence            35556788899998765  79999999999999999999999999999999999999884  3 7999999999999999


Q ss_pred             CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390          180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~  259 (512)
                      +..+......                           .  ........+.+....+++ +..++.+.+||..........
T Consensus        82 ~~~~~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  131 (293)
T d1p22a2          82 VNTGEMLNTL---------------------------I--HHCEAVLHLRFNNGMMVT-CSKDRSIAVWDMASPTDITLR  131 (293)
T ss_dssp             SSSCCEEEEE---------------------------C--CCCSCEEEEECCTTEEEE-EETTSCEEEEECSSSSCCEEE
T ss_pred             cccccccccc---------------------------c--ccccccccccccccceee-cccccceeEeecccccccccc
Confidence            9866432211                           0  111222334455556665 447999999999876543322


Q ss_pred             cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS  339 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~  339 (512)
                      .        ....+...+..+.+.+  ..+++++.|+.|++||++..  ..+..+.++..  .+..+.  +++.++++++
T Consensus       132 ~--------~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~--~~~~~~~~~~~--~v~~~~--~~~~~l~~~~  195 (293)
T d1p22a2         132 R--------VLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTC--EFVRTLNGHKR--GIACLQ--YRDRLVVSGS  195 (293)
T ss_dssp             E--------EECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTC--CEEEEEECCSS--CEEEEE--EETTEEEEEE
T ss_pred             c--------cccccccccccceecc--cccccccCCCceeeecCCCC--cEEEEEccccc--cccccc--CCCCeEEEec
Confidence            1        3445556676666654  57888999999999998763  34455554432  233444  4567899999


Q ss_pred             CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      .||.|++||+.+... .....+|...|..+.  +++ .+|++++.||.|++||+.......
T Consensus       196 ~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~--~~~-~~l~sg~~dg~i~iwd~~~~~~~~  252 (293)
T d1p22a2         196 SDNTIRLWDIECGAC-LRVLEGHEELVRCIR--FDN-KRIVSGAYDGKIKVWDLVAALDPR  252 (293)
T ss_dssp             TTSCEEEEETTTCCE-EEEECCCSSCEEEEE--CCS-SEEEEEETTSCEEEEEHHHHTSTT
T ss_pred             CCCEEEEEeccccee-eeeecccceeeeecc--ccc-eEEEEEcCCCEEEEEECCCCcccc
Confidence            999999999998766 467778888887654  455 799999999999999987665443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2.4e-26  Score=218.65  Aligned_cols=310  Identities=12%  Similarity=0.008  Sum_probs=214.0

Q ss_pred             eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390           39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK  118 (512)
Q Consensus        39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~  118 (512)
                      .+.++..+..|. .+.+++|   ||||++|++++.||.|++||+.+.....        ...+....+|.+.+.+..|+|
T Consensus        51 t~~v~~~~~~g~-~~~~v~f---SpDG~~l~~~s~dg~v~~~d~~t~~~~~--------~~~i~~~~~~~~~~~s~~~Sp  118 (432)
T d1qksa2          51 TYEIKTVLDTGY-AVHISRL---SASGRYLFVIGRDGKVNMIDLWMKEPTT--------VAEIKIGSEARSIETSKMEGW  118 (432)
T ss_dssp             TCCEEEEEECSS-CEEEEEE---CTTSCEEEEEETTSEEEEEETTSSSCCE--------EEEEECCSEEEEEEECCSTTC
T ss_pred             CCcEEEEEeCCC-CeeEEEE---CCCCCEEEEEcCCCCEEEEEeeCCCceE--------EEEEecCCCCCCeEEecccCC
Confidence            345555555553 5788888   9999999999999999999998764311        122444556777888888999


Q ss_pred             CCCEE-EEEeCCCcEEEEeCCCCeeeecccC-----------cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390          119 EDTNI-LTASGDQTIKIWDAEKKKCTGALMG-----------HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP  186 (512)
Q Consensus       119 ~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~-----------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  186 (512)
                      ||++| ++++.+++|+|||..+++++..+..           +......+.++|++..++++...++.|.+||..+.+..
T Consensus       119 DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~  198 (432)
T d1qksa2         119 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL  198 (432)
T ss_dssp             TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc
Confidence            99987 6788899999999999988776543           34566788999998666778888899999998754321


Q ss_pred             CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc-
Q 010390          187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE-  265 (512)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~-  265 (512)
                      ..                          ....+...+..++|+|+++++++++..+..+.++|..+.+........... 
T Consensus       199 ~~--------------------------~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~  252 (432)
T d1qksa2         199 KT--------------------------TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP  252 (432)
T ss_dssp             EE--------------------------EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred             eE--------------------------EEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCcccc
Confidence            10                          111234567899999999999988878889999999876654332111100 


Q ss_pred             --------------------------------ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEe
Q 010390          266 --------------------------------SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQH  313 (512)
Q Consensus       266 --------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  313 (512)
                                                      .......+...+....+++++..+++++.++..++|+......     
T Consensus       253 ~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~-----  327 (432)
T d1qksa2         253 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP-----  327 (432)
T ss_dssp             CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS-----
T ss_pred             ccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCC-----
Confidence                                            0001111223345555666666666666666666666432211     


Q ss_pred             eeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeE-EEEe----CCCcE
Q 010390          314 FSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKI-VTSS----DDYTV  388 (512)
Q Consensus       314 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l-~s~~----~dg~i  388 (512)
                         +.  .....+++ ||++.+++++.|+.+++|++.+...    +..|...|.+++|+||| +++ ++..    .||.|
T Consensus       328 ---~~--~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~----l~~~~~~v~~~~fS~DG-~~v~~S~~~~~~~~g~i  396 (432)
T d1qksa2         328 ---EA--EISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG----ITEGQPRVVQGEFNKDG-TEVWFSVWNGKDQESAL  396 (432)
T ss_dssp             ---SH--HHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT----CCSSCCEEEEEEECTTS-SEEEEEEECCTTSCCEE
T ss_pred             ---CC--CeeeEEEE-EechhhcccccCCceEecccccccc----cCCCCCcEEEeEECCCC-CEEEEEEecCCCCCCcE
Confidence               00  00112344 8999999999999999999865432    33577789999999999 555 4432    47899


Q ss_pred             EEEeCCCCcccccc
Q 010390          389 RLWSLENSRCSSMR  402 (512)
Q Consensus       389 ~vwd~~~~~~~~~~  402 (512)
                      .|||..++++....
T Consensus       397 ~i~D~~T~k~~~~i  410 (432)
T d1qksa2         397 VVVDDKTLELKHVI  410 (432)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEECCCceEEeEe
Confidence            99999999876653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=3.7e-26  Score=217.96  Aligned_cols=324  Identities=11%  Similarity=0.008  Sum_probs=212.5

Q ss_pred             eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390           40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE  119 (512)
Q Consensus        40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~  119 (512)
                      +.++..+.+|. .+.+|+|   ||||++|++++.||.|++||+.+++...        ...+....+|.+.+.+++|+||
T Consensus        52 ~~~~~~l~~g~-~~~~vaf---SPDGk~l~~~~~d~~v~vwd~~t~~~~~--------~~~i~~~~~~~~~~~s~~~spD  119 (426)
T d1hzua2          52 KKIVKVIDTGY-AVHISRM---SASGRYLLVIGRDARIDMIDLWAKEPTK--------VAEIKIGIEARSVESSKFKGYE  119 (426)
T ss_dssp             CSEEEEEECCS-SEEEEEE---CTTSCEEEEEETTSEEEEEETTSSSCEE--------EEEEECCSEEEEEEECCSTTCT
T ss_pred             CcEEEEEeCCC-CeeEEEE---CCCCCEEEEEeCCCCEEEEEccCCceeE--------EEEEeCCCCCcceEEeeeecCC
Confidence            45555666554 4788888   9999999999999999999998875411        1223444577788888999999


Q ss_pred             CCEEE-EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390          120 DTNIL-TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS  198 (512)
Q Consensus       120 ~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  198 (512)
                      |++|+ ++..++.+.+||..++++...+..|...+..+.+.+++....++.+.|+...++.............       
T Consensus       120 G~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~-------  192 (426)
T d1hzua2         120 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY-------  192 (426)
T ss_dssp             TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC-------
T ss_pred             CCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe-------
Confidence            99876 5557999999999999988877776665555555555533445555555555544332211100000       


Q ss_pred             ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390          199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS  278 (512)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  278 (512)
                              ............+...+..+.++|++++++++...+..+.+++..+++.........         ......
T Consensus       193 --------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  255 (426)
T d1hzua2         193 --------KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK---------TPHPGR  255 (426)
T ss_dssp             --------SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSS---------CCCCSC
T ss_pred             --------ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCC---------cccccc
Confidence                    000000112235566789999999999999988888899999999887765432111         111122


Q ss_pred             EEEeCCCC--CE-EEEEecCCeEEEEEcccCC-----CCceEeeeeceeceeEEEEEECCCCCEEEE-------ecCCCC
Q 010390          279 SLSQDSNG--VF-LTASCMDHRIYLYNVLQLD-----KGPIQHFSGCRIESFYVKSEICPNASHILS-------GSSDGN  343 (512)
Q Consensus       279 ~~~~~~~~--~~-l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-------g~~dg~  343 (512)
                      ...+...+  .. .+..+.|+.+.+|+.....     ......+.++.  ..+..++|+|++++|++       +..+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~--~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t  333 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFNPDARISQS  333 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSS--SCCCCEECCTTCSEEEECCTTCSSHHHHTC
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCC--CceeEEEcCCCCceEEEeecCCCCcccCCE
Confidence            22222222  12 2233356777777754321     13344555543  33556899999999994       556789


Q ss_pred             EEEEecCCCCCCCce--------eccccCCeEEEEeCCCCCCeEEEE----eCCCcEEEEeCCCCccccc
Q 010390          344 AYVWQVNKPQADPIK--------LKSHDGEVTAVNWCPNEAGKIVTS----SDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       344 i~iw~~~~~~~~~~~--------~~~h~~~v~~v~~~~~~~~~l~s~----~~dg~i~vwd~~~~~~~~~  401 (512)
                      |+|||+.+++.....        +..|...|.+++|+|||.++++++    +.||.|+|||..+++....
T Consensus       334 v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~  403 (426)
T d1hzua2         334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV  403 (426)
T ss_dssp             EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEE
Confidence            999999988764332        234566799999999994344554    3688999999999987654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=3.1e-24  Score=194.38  Aligned_cols=273  Identities=10%  Similarity=0.098  Sum_probs=203.7

Q ss_pred             EEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeeecc
Q 010390           68 FAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTGAL  146 (512)
Q Consensus        68 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~  146 (512)
                      .++++.|+.|.|||+++++.             +.++.. ...+..++|+|||++|+ +++.++.|++||+.+++.+..+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~-------------~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~   70 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKV-------------TATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV   70 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEE-------------EEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeE-------------EEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee
Confidence            34567899999999987743             444433 35678999999999885 6667899999999999999988


Q ss_pred             cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEE
Q 010390          147 MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSV  226 (512)
Q Consensus       147 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  226 (512)
                      ..+. .+..+.|++++...++++..++.+.+|+..+++...                            ...+.....++
T Consensus        71 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~  121 (301)
T d1l0qa2          71 PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG----------------------------TVKTGKSPLGL  121 (301)
T ss_dssp             ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----------------------------EEECSSSEEEE
T ss_pred             eccc-cccccccccccccccccccccceeeecccccceeee----------------------------eccccccceEE
Confidence            8765 578999999986677777788899999987654222                            11234467889


Q ss_pred             EEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC-CeEEEEEccc
Q 010390          227 LYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD-HRIYLYNVLQ  305 (512)
Q Consensus       227 ~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~  305 (512)
                      .++|++..+++++..++.+.+|+..+.......            .....+..+.+++++..+++++.+ +.+.+|+...
T Consensus       122 ~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (301)
T d1l0qa2         122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV------------SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------------ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EeecCCCeeeeeeccccceeeeeccccceeeec------------ccCCCceEEEeeccccceeeecccccccccccccc
Confidence            999999999988888999999999988766432            223457889999999988888765 5666777543


Q ss_pred             CCCCceEeeeeceeceeEEEEEECCCCCEEEEec---CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEE
Q 010390          306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGS---SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~  382 (512)
                      .  .......   .......++++++++.++.+.   .++.|++||+.+++.. ..+. +...+.+++|+|||..+++++
T Consensus       190 ~--~~~~~~~---~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~-~~~~-~~~~~~~va~spdg~~l~va~  262 (301)
T d1l0qa2         190 N--SVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-ARIP-VGPDPAGIAVTPDGKKVYVAL  262 (301)
T ss_dssp             T--EEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-EEEE-CCSSEEEEEECTTSSEEEEEE
T ss_pred             e--eeeeccc---ccCCcceeeccccccccccccccceeeeeeeeecCCCeEE-EEEc-CCCCEEEEEEeCCCCEEEEEE
Confidence            2  1122221   223355689999999886553   3467999999887653 3333 345689999999993345788


Q ss_pred             eCCCcEEEEeCCCCcccccc
Q 010390          383 SDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       383 ~~dg~i~vwd~~~~~~~~~~  402 (512)
                      +.|+.|++||+++++++.++
T Consensus       263 ~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         263 SFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEE
Confidence            89999999999999877653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=2.5e-25  Score=212.19  Aligned_cols=297  Identities=9%  Similarity=0.049  Sum_probs=199.9

Q ss_pred             cCCCc--EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 010390           62 SKNSH--IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK  139 (512)
Q Consensus        62 s~~~~--~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~  139 (512)
                      +.|.+  ++++...||.|+|||+.+++.             +.++..| ..+..++|+|||++|++++.|++|++||+.+
T Consensus        27 ~~d~~~~~~V~~~~dg~v~vwD~~t~~~-------------~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t   92 (426)
T d1hzua2          27 DLDLPNLFSVTLRDAGQIALVDGDSKKI-------------VKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWA   92 (426)
T ss_dssp             CCCGGGEEEEEETTTTEEEEEETTTCSE-------------EEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             cCCCCeEEEEEEcCCCEEEEEECCCCcE-------------EEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccC
Confidence            45543  567788899999999988743             6677766 4699999999999999999999999999998


Q ss_pred             Ceeee-----cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccce
Q 010390          140 KKCTG-----ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVS  214 (512)
Q Consensus       140 ~~~~~-----~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (512)
                      ++...     ...+|.+.+.+++|+|++..+++++..++.+++||..+............                ....
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~----------------~~~~  156 (426)
T d1hzua2          93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM----------------TVDT  156 (426)
T ss_dssp             SSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE----------------CSSS
T ss_pred             CceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC----------------Cccc
Confidence            86433     23356667788889999944556667899999999987654332211000                0000


Q ss_pred             ecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-
Q 010390          215 RRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-  293 (512)
Q Consensus       215 ~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  293 (512)
                      ....+......+..++++..++.+....+.+.+++.........          ....+...+..+.++|++++++++. 
T Consensus       157 ~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV----------TSIGAAPFLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEE----------EEEECCSSEEEEEECTTSCEEEEEET
T ss_pred             eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceee----------EEeccCCccEeeeECCCCcEEEeeee
Confidence            11123445667777888888877666667777777665543322          2334556688999999999888776 


Q ss_pred             cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC--CCE-EEEecCCCCEEEEecCCCC------CCCceeccccC
Q 010390          294 MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN--ASH-ILSGSSDGNAYVWQVNKPQ------ADPIKLKSHDG  364 (512)
Q Consensus       294 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~-l~~g~~dg~i~iw~~~~~~------~~~~~~~~h~~  364 (512)
                      .+..+.+++...................  ....+...  +.. .+..+.|+.+.+|+.....      .....+.+|..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~  304 (426)
T d1hzua2         227 NSNKVAVIDSKDRRLSALVDVGKTPHPG--RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG  304 (426)
T ss_dssp             TCSEEEEEETTTTEEEEEEECSSCCCCS--CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSS
T ss_pred             cccceeeeecccccEEEEeccCCccccc--ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCC
Confidence            4567889997654322222211111111  11222222  222 2344557778888765432      12346789999


Q ss_pred             CeEEEEeCCCCCCeEE-------EEeCCCcEEEEeCCCCccccc
Q 010390          365 EVTAVNWCPNEAGKIV-------TSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       365 ~v~~v~~~~~~~~~l~-------s~~~dg~i~vwd~~~~~~~~~  401 (512)
                      .+..++|+|++ .+|+       +++.|++|+|||+.+++....
T Consensus       305 ~v~~v~~sPdg-~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~  347 (426)
T d1hzua2         305 GSLFIKTHPKS-SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ  347 (426)
T ss_dssp             CCCCEECCTTC-SEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred             ceeEEEcCCCC-ceEEEeecCCCCcccCCEEEEEECCCCCcCeE
Confidence            99999999999 7887       456789999999999987664

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.3e-25  Score=207.41  Aligned_cols=262  Identities=11%  Similarity=0.105  Sum_probs=187.0

Q ss_pred             CccCCcceEEEEEecCCCcEEEEeeCCC--cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390           48 GEETPPLAVSFCKTSKNSHIFAVSDEDG--YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT  125 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~latg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  125 (512)
                      +|.+.|.+++|   +|||++|++++.+.  .|++||.+++.              ...+..|...|.+++|+|++++|++
T Consensus        40 ~~~~~v~~~~~---spDg~~l~~~~~~~g~~v~v~d~~~~~--------------~~~~~~~~~~v~~~~~spdg~~l~~  102 (360)
T d1k32a3          40 PEPLRIRYVRR---GGDTKVAFIHGTREGDFLGIYDYRTGK--------------AEKFEENLGNVFAMGVDRNGKFAVV  102 (360)
T ss_dssp             SCCSCEEEEEE---CSSSEEEEEEEETTEEEEEEEETTTCC--------------EEECCCCCCSEEEEEECTTSSEEEE
T ss_pred             cCCCCEEEEEE---CCCCCEEEEEEcCCCCEEEEEECCCCc--------------EEEeeCCCceEEeeeecccccccce
Confidence            79999999998   99999998776543  79999998764              4567789999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEe----------CCCcEEEEeCCCCCCCCCcccccee
Q 010390          126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS----------RDGSFAIWDLRCKSSPKSNCAESFV  195 (512)
Q Consensus       126 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~  195 (512)
                      ++.++.+++|++.+++....+..|...+.+++|+|++ ++|+.+.          .++.+++||+.+++..         
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~---------  172 (360)
T d1k32a3         103 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF---------  172 (360)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE---------
T ss_pred             eccccccccccccccceeeeeecccccccchhhccce-eeeeeeccccccceeeccccceeeeccccCcee---------
Confidence            9999999999999999998899899999999999998 7776543          3456899998764321         


Q ss_pred             eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc-------cCC-C-c--
Q 010390          196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ-------AWP-H-A--  264 (512)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~-------~~~-~-~--  264 (512)
                                         ....+...+..+.|+|+++.+++++ .++.+.+||..........       ... . .  
T Consensus       173 -------------------~~~~~~~~~~~~~~spdg~~l~~~s-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (360)
T d1k32a3         173 -------------------AATTENSHDYAPAFDADSKNLYYLS-YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP  232 (360)
T ss_dssp             -------------------ECSCSSSBEEEEEECTTSCEEEEEE-SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred             -------------------eecccccccccccccCCCCEEEEEe-CCCceEcccccccceeeccccceEEEecccCcccc
Confidence                               2234456788899999999998855 7999999987643321100       000 0 0  


Q ss_pred             -------cc--------------cccccccccCeeEEEeCCCC-------------CEEEEEecCCeEEEEEcccCCCCc
Q 010390          265 -------ES--------------SSAKETRLHGISSLSQDSNG-------------VFLTASCMDHRIYLYNVLQLDKGP  310 (512)
Q Consensus       265 -------~~--------------~~~~~~~~~~i~~~~~~~~~-------------~~l~~~~~dg~i~i~d~~~~~~~~  310 (512)
                             ..              .............+...+++             .++++++.++.|++||+...+   
T Consensus       233 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---  309 (360)
T d1k32a3         233 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---  309 (360)
T ss_dssp             GGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---
T ss_pred             ceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe---
Confidence                   00              00000011122233333332             234455567899999986532   


Q ss_pred             eEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCC
Q 010390          311 IQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGE  365 (512)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~  365 (512)
                      ...+.     ..+..++|+|||++|++++.||.|++||+++++.. .++..+..+
T Consensus       310 ~~~~~-----~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~-~~~~~d~~~  358 (360)
T d1k32a3         310 VTEVK-----NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE-RTVETDKRP  358 (360)
T ss_dssp             EEEEE-----EEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSC-EECCCCSSC
T ss_pred             EEEec-----CCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcc-eEEEecccc
Confidence            22222     34678999999999999999999999999988763 444444433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=3.2e-22  Score=189.96  Aligned_cols=285  Identities=8%  Similarity=-0.027  Sum_probs=196.1

Q ss_pred             cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee--
Q 010390           66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT--  143 (512)
Q Consensus        66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--  143 (512)
                      -++++.+.+|.|.|||.++++.             +..+..| ..+..++|+|||++|++++.|+.|++||+.+++..  
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v-------------~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~   98 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEI-------------KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV   98 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCE-------------EEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcE-------------EEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE
Confidence            3468889999999999988754             6667666 46999999999999999999999999999887632  


Q ss_pred             ---ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccc
Q 010390          144 ---GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAAS  220 (512)
Q Consensus       144 ---~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (512)
                         .....|.+.+.+..|+|++..+++++..++.|++||..+++..........                ........+.
T Consensus        99 ~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~----------------~~~~~~~~~~  162 (432)
T d1qksa2          99 AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM----------------TYDEQEYHPE  162 (432)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE----------------CTTTCCEESC
T ss_pred             EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc----------------cccceeccCC
Confidence               223456667777788899944568888999999999988765432211100                0000112344


Q ss_pred             ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec-CCeEE
Q 010390          221 MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM-DHRIY  299 (512)
Q Consensus       221 ~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~  299 (512)
                      .....+.+++++..++++...++.|.+||..+.+.....          .......+..++++|+|+++++++. ++.+.
T Consensus       163 ~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~----------~i~~g~~~~~~~~spdg~~~~va~~~~~~v~  232 (432)
T d1qksa2         163 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT----------EISAERFLHDGGLDGSHRYFITAANARNKLV  232 (432)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE----------EEECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             CceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEE----------EEcccCccccceECCCCCEEEEeccccceEE
Confidence            567788999999999888888999999998876544321          1223345789999999998887775 56888


Q ss_pred             EEEcccCCCCceEeeee-ceeceeEEEEEECCCCCEEEEec-CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCC
Q 010390          300 LYNVLQLDKGPIQHFSG-CRIESFYVKSEICPNASHILSGS-SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAG  377 (512)
Q Consensus       300 i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~  377 (512)
                      ++|.............. ...........+...+...++.. .++.|.+|+.....     ...|...|....++|++ .
T Consensus       233 v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~-----~~~~~~~v~~~~~~~~g-~  306 (432)
T d1qksa2         233 VIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG-----HPDNAWKILDSFPALGG-G  306 (432)
T ss_dssp             EEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT-----CTTTBTSEEEEEECSCS-C
T ss_pred             EeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc-----ccccccEEEEEEEcCCC-C
Confidence            88875532211111100 11111222344444454444443 47788899765432     23566778888899988 7


Q ss_pred             eEEEEeCCCcEEEEeCCCC
Q 010390          378 KIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       378 ~l~s~~~dg~i~vwd~~~~  396 (512)
                      .+++++.|...++|+....
T Consensus       307 ~~~~~s~p~~~~lw~~~~~  325 (432)
T d1qksa2         307 SLFIKTHPNSQYLYVDATL  325 (432)
T ss_dssp             CCCEECCTTCSEEEEECTT
T ss_pred             eEEEEecCCccceeecccC
Confidence            8888888888999986554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=5.1e-22  Score=183.34  Aligned_cols=293  Identities=8%  Similarity=-0.016  Sum_probs=187.5

Q ss_pred             ecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCC
Q 010390           61 TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAE  138 (512)
Q Consensus        61 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~  138 (512)
                      +++++++|++++.++.|.|||+++++.             +.+++ .|...+.+++|+|||++++ ++..++.|++||+.
T Consensus         4 ~~~~~~~l~~~~~~~~v~v~D~~t~~~-------------~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~   70 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPNNLHVVDVASDTV-------------YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   70 (346)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEE-------------EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCCCcEEEEEcCCCEEEEEECCCCCE-------------EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc
Confidence            499999999999999999999987643             55554 4566788999999999875 55678999999999


Q ss_pred             CCeeeecccCcC------CCEEEEEeeCCCCCeEEEEe------------CCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          139 KKKCTGALMGHT------GSIKSLCSHPTNSDILVSGS------------RDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       139 ~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      +++.+..+....      ..+..++|+|++ .++++++            .++.+.+|+..++......           
T Consensus        71 t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------  138 (346)
T d1jmxb_          71 TCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV-----------  138 (346)
T ss_dssp             TTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-----------
T ss_pred             cCeeeeeecccccccccCCceEEEEEecCC-CEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE-----------
Confidence            998877664322      245678999998 6666554            3667788887654432211           


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc----------
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK----------  270 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----------  270 (512)
                                    ........+..+.+.+++..++.    ++.+.+|++.+++................          
T Consensus       139 --------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (346)
T d1jmxb_         139 --------------RTFPMPRQVYLMRAADDGSLYVA----GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH  200 (346)
T ss_dssp             --------------EEEECCSSCCCEEECTTSCEEEE----SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred             --------------EeeeccCceEEEEecCCCEEEEe----CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEE
Confidence                          00111223445556666654443    35688999888766544321111000000          


Q ss_pred             cccccCe----eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390          271 ETRLHGI----SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV  346 (512)
Q Consensus       271 ~~~~~~i----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i  346 (512)
                      ......+    ....+......+.++..++.+.+||+.....   ...........+..+.+++++.+++.+.. +.|.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v  276 (346)
T d1jmxb_         201 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT---HTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAK  276 (346)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEE
T ss_pred             ecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCce---EEEEeecccceeEEEEEeCCCCEEEEecC-CeEEE
Confidence            0000000    1111222333444555566788888754322   11112222344667888899888877664 56999


Q ss_pred             EecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          347 WQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       347 w~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      ||..+++.. ..+ .+...+.+++|+||| ++|++++.|+.|++||+++++.+....
T Consensus       277 ~d~~~~~~~-~~~-~~~~~~~~va~s~DG-~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         277 YDLKQRKLI-KAA-NLDHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             EETTTTEEE-EEE-ECSSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EECCCCcEE-EEE-cCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            999887653 223 344579999999999 899999999999999999999887644

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=7.4e-22  Score=181.51  Aligned_cols=284  Identities=9%  Similarity=0.014  Sum_probs=190.1

Q ss_pred             cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc--cCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCee
Q 010390           66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV--AHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKC  142 (512)
Q Consensus        66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~  142 (512)
                      +||++++.|+.|.|||+++.+.             +..+.  .+...+.+++|+|||++|+ +++.++.|.+||+.+++.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~-------------~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~   68 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAV-------------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET   68 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEE-------------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE
T ss_pred             eEEEEEcCCCEEEEEECCCCeE-------------EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE
Confidence            5899999999999999987643             44443  3445688999999999875 667899999999999998


Q ss_pred             eecccCcCC-----CEEEEEeeCCCCCeEEEEeC------------CCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390          143 TGALMGHTG-----SIKSLCSHPTNSDILVSGSR------------DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH  205 (512)
Q Consensus       143 ~~~~~~h~~-----~v~~l~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (512)
                      +..+..+..     .+..++|+|++ ..++++..            +..+.+||..+.....                  
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------------------  129 (337)
T d1pbyb_          69 LGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK------------------  129 (337)
T ss_dssp             EEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE------------------
T ss_pred             EEEEecCCCcccccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCeEEE------------------
Confidence            887765543     34578999998 66766653            4667777776543221                  


Q ss_pred             cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc------------c
Q 010390          206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET------------R  273 (512)
Q Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------------~  273 (512)
                                ...+...+..++|+|+++.+++++   +.+.+||..+++..................            +
T Consensus       130 ----------~~~~~~~~~~~~~s~dg~~l~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (337)
T d1pbyb_         130 ----------AFEAPRQITMLAWARDGSKLYGLG---RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG  196 (337)
T ss_dssp             ----------EEECCSSCCCEEECTTSSCEEEES---SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred             ----------eccccCCceEEEEcCCCCEEEEEc---CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccc
Confidence                      112334677899999999998753   557889998876654432211100000000            0


Q ss_pred             ccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390          274 LHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~  353 (512)
                      ...........+......+..++.+.+||......   ..............+++++++.+++.+  ++.|++||+.+.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~  271 (337)
T d1pbyb_         197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA  271 (337)
T ss_dssp             EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE
T ss_pred             eeeeeeeeeeeccceeeecccCccEEEEEcCCCcE---EEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc
Confidence            00001111111112222233445788888765322   222222233456678899999998876  5789999999877


Q ss_pred             CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390          354 ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR  402 (512)
Q Consensus       354 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  402 (512)
                      .. ..+ .+...+.+++|+||| .+|++++.|+.|+|||..+++.+..+
T Consensus       272 ~~-~~~-~~~~~~~~~~~s~dG-~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         272 SI-KRV-PLPHSYYSVNVSTDG-STVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EE-EEE-ECSSCCCEEEECTTS-CEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             EE-EEE-cCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            63 333 456678999999999 89999999999999999999877654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=7.4e-20  Score=170.75  Aligned_cols=301  Identities=8%  Similarity=-0.060  Sum_probs=199.6

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEe-----eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVS-----DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED  120 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~  120 (512)
                      ...+.+++.++++   +|||+.+++.     +..+.|.+||..+++.             +.++..+...  .++|+|||
T Consensus        16 ~~~~~~p~~~~a~---spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~-------------~~~~~~~~~~--~~a~SpDG   77 (373)
T d2madh_          16 AGAADGPTNDEAP---GADGRRSYINLPAHHSAIIQQWVLDAGSGSI-------------LGHVNGGFLP--NPVAAHSG   77 (373)
T ss_pred             cccCCCCcccccc---CCCCCEEEEEcccccCCCceEEEEECCCCCE-------------EEEEeCCCCc--cEEEcCCC
Confidence            3458899999999   9999988764     3346799999887743             5555555443  69999999


Q ss_pred             CEEEEEeC----------CCcEEEEeCCCCeeeecccCcCCCE-------EEEEeeCCCCCeEEEE-eCCCcEEEEeCCC
Q 010390          121 TNILTASG----------DQTIKIWDAEKKKCTGALMGHTGSI-------KSLCSHPTNSDILVSG-SRDGSFAIWDLRC  182 (512)
Q Consensus       121 ~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v-------~~l~~~~~~~~~l~s~-~~dg~i~vwd~~~  182 (512)
                      ++|++++.          ++.|.+||..+++.+..+..+....       ..+.|++++...++.. ..++.+.+|+...
T Consensus        78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~  157 (373)
T d2madh_          78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG  157 (373)
T ss_pred             CEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC
Confidence            99998753          5789999999999988877665544       3456777763322222 3345677777654


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~  262 (512)
                      .+.                               ..+.....++.++++++.++++.+.|+.+.+|+.............
T Consensus       158 ~~~-------------------------------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~  206 (373)
T d2madh_         158 SSD-------------------------------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA  206 (373)
T ss_pred             CeE-------------------------------EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee
Confidence            321                               1223356788999999988877888999999999887655432211


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece--------eceeEEEEEECCCCCE
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR--------IESFYVKSEICPNASH  334 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~  334 (512)
                      .     ...........+.+++++.++ ..+.++.+.+|+................        .......+++++++..
T Consensus       207 ~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  280 (373)
T d2madh_         207 M-----LTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG  280 (373)
T ss_pred             c-----cccCccceeeeEEECCCceEE-EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCe
Confidence            1     011112223445566666544 4557888999987653322222111110        0111223455665554


Q ss_pred             E----------EEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCC-eEEEEeCCCcEEEEeCCCCccccccc
Q 010390          335 I----------LSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAG-KIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       335 l----------~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      +          +....++.+.+||..+++.. .. ..+...+.+++|+|||.. ++++++.|+.|++||+.+++.++.+.
T Consensus       281 ~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~-~~-~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS-SQ-ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EEEecCCCceEEeecCCCeEEEEECCCCcEE-EE-ecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            4          44556678999999888763 33 346678999999999933 45788999999999999999887654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=4.6e-20  Score=166.55  Aligned_cols=241  Identities=12%  Similarity=0.081  Sum_probs=180.4

Q ss_pred             CCcceEEEEEecCCCcEEE-EeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeC
Q 010390           51 TPPLAVSFCKTSKNSHIFA-VSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASG  128 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~la-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~  128 (512)
                      +.+.+|+|   +|||++|+ +++.++.|++||+.+++.             +..+..|. .+..+.|++++.+++ ++..
T Consensus        32 ~~p~~va~---spdG~~l~v~~~~~~~i~v~d~~t~~~-------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   94 (301)
T d1l0qa2          32 SNPMGAVI---SPDGTKVYVANAHSNDVSIIDTATNNV-------------IATVPAGS-SPQGVAVSPDGKQVYVTNMA   94 (301)
T ss_dssp             SSEEEEEE---CTTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEECSS-SEEEEEECTTSSEEEEEETT
T ss_pred             CCceEEEE---eCCCCEEEEEECCCCEEEEEECCCCce-------------eeeeeccc-cccccccccccccccccccc
Confidence            34678888   99999874 667889999999987633             55555554 578999999998766 5556


Q ss_pred             CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      ++.+.+|+..+++....+..+ ..+.++.|+|++..+++++..++.+.+|+..+.....                     
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  152 (301)
T d1l0qa2          95 SSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN---------------------  152 (301)
T ss_dssp             TTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---------------------
T ss_pred             cceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceee---------------------
Confidence            789999999999988888754 5678899999996666777788899999987654322                     


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                             ...+...+..+.+++++..+++++..++.+.+|+.........            ......+..+++++++..
T Consensus       153 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~  213 (301)
T d1l0qa2         153 -------TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT------------VKVEAAPSGIAVNPEGTK  213 (301)
T ss_dssp             -------EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE------------EECSSEEEEEEECTTSSE
T ss_pred             -------ecccCCCceEEEeeccccceeeecccccccccccccceeeeec------------ccccCCcceeeccccccc
Confidence                   1123346788999999999998877678888888877654432            222244678999999998


Q ss_pred             EEEEec---CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecCCCCEEEEecCCCCC
Q 010390          289 LTASCM---DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       289 l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~  354 (512)
                      ++++..   ++.|++||+.+.+  .+..+..   ...+..++|+|||++| ++++.++.|++||+.+++.
T Consensus       214 ~~v~~~~~~~~~v~v~D~~t~~--~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         214 AYVTNVDKYFNTVSMIDTGTNK--ITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             EEEEEECSSCCEEEEEETTTTE--EEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             cccccccceeeeeeeeecCCCe--EEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            877654   3689999986532  2333322   2346779999999987 6778899999999988765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.2e-20  Score=171.31  Aligned_cols=291  Identities=8%  Similarity=0.088  Sum_probs=191.6

Q ss_pred             EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeeeec
Q 010390           67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS-GDQTIKIWDAEKKKCTGA  145 (512)
Q Consensus        67 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~  145 (512)
                      .++++..|+.|+||+++....          .. +.....|.+.+..|+|+|||++|++++ .|+.|++|++........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~----------l~-~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~   74 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGA----------LT-LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT   74 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC----------EE-EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEECCCCCcEEEEEEcCCCC----------eE-EEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence            457778999999999875421          11 223346789999999999999996554 589999999876643322


Q ss_pred             c---cCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccc
Q 010390          146 L---MGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM  221 (512)
Q Consensus       146 ~---~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (512)
                      +   ..+...+..++|+|++ ++|++++ .++.|.+|+........                         ......+..
T Consensus        75 ~~~~~~~~~~p~~l~~spDg-~~l~v~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~~  128 (333)
T d1ri6a_          75 FAAESALPGSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVG-------------------------VVDVVEGLD  128 (333)
T ss_dssp             EEEEEECSSCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEE-------------------------EEEEECCCT
T ss_pred             EeeecccCCCceEEEEcCCC-CEEeecccCCCceeeecccccccee-------------------------cccccCCCc
Confidence            2   2234567789999998 6666666 46789999876432111                         112223455


Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEE
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYL  300 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i  300 (512)
                      .+.++.++|+++.+++++..+..+.+|+..............     ...........++|++++..++... ..+...+
T Consensus       129 ~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v  203 (333)
T d1ri6a_         129 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE-----VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDV  203 (333)
T ss_dssp             TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-----EECSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             cceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee-----eeeecCCCccEEEEeccceeEEeeccccCceEE
Confidence            678889999999999888778889999987654433211110     1122234467899999998877665 5567888


Q ss_pred             EEcccCCCCceE--eeee----ceeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCCCCCCCce--eccccCCeEEEEe
Q 010390          301 YNVLQLDKGPIQ--HFSG----CRIESFYVKSEICPNASHILS-GSSDGNAYVWQVNKPQADPIK--LKSHDGEVTAVNW  371 (512)
Q Consensus       301 ~d~~~~~~~~~~--~~~~----~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~~~~~~~~--~~~h~~~v~~v~~  371 (512)
                      |+..........  ....    .........+++++++++++. +..++.+.+|++.........  ...+...+.+++|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~  283 (333)
T d1ri6a_         204 WELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV  283 (333)
T ss_dssp             EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEE
T ss_pred             EeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEE
Confidence            886543322211  1111    112234556789999987754 556788999998766543222  1223456789999


Q ss_pred             CCCCCCeEEEE-eCCCcEEEEe--CCCCcccc
Q 010390          372 CPNEAGKIVTS-SDDYTVRLWS--LENSRCSS  400 (512)
Q Consensus       372 ~~~~~~~l~s~-~~dg~i~vwd--~~~~~~~~  400 (512)
                      +||| ++|+++ ..++.|++|+  .++|++..
T Consensus       284 spDG-k~l~va~~~~~~v~v~~id~~tG~l~~  314 (333)
T d1ri6a_         284 DHSG-KYLIAAGQKSHHISVYEIVGEQGLLHE  314 (333)
T ss_dssp             CTTS-SEEEEECTTTCEEEEEEEETTTTEEEE
T ss_pred             eCCC-CEEEEEECCCCeEEEEEEECCCCcEEE
Confidence            9999 665554 5678999995  45665543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=2.7e-19  Score=165.65  Aligned_cols=288  Identities=11%  Similarity=-0.014  Sum_probs=186.7

Q ss_pred             cCCCcEEEEee-----CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe---------
Q 010390           62 SKNSHIFAVSD-----EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS---------  127 (512)
Q Consensus        62 s~~~~~latg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~---------  127 (512)
                      +|||+.+++..     .++.|.+||..+++.             +.++..+...  .++|+|||++|++++         
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-------------~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g   74 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------------IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARG   74 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEE
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcE-------------EEEEECCCCC--ceEEcCCCCEEEEEeCCCcccccc
Confidence            89999887753     456799999987743             4455554444  699999999888643         


Q ss_pred             -CCCcEEEEeCCCCeeeecccCcC-------CCEEEEEeeCCCCCeEEEEe--CCCcEEEEeCCCCCCCCCccccceeee
Q 010390          128 -GDQTIKIWDAEKKKCTGALMGHT-------GSIKSLCSHPTNSDILVSGS--RDGSFAIWDLRCKSSPKSNCAESFVFS  197 (512)
Q Consensus       128 -~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~  197 (512)
                       .|+.|++||+.+++.+..+..+.       .....++|+|++ ..++.+.  .+..+.+|+..+++..........   
T Consensus        75 ~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  150 (355)
T d2bbkh_          75 ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---  150 (355)
T ss_dssp             EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---
T ss_pred             CCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCC-CeeEEecCCCCceeeeeecCCCcEeeEEecCCc---
Confidence             47899999999998877664322       233567899998 5555543  457899999986653321110000   


Q ss_pred             cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                                       ...........+.+++++..+++....++.+.+++......                .+...+
T Consensus       151 -----------------~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~----------------~~~~~~  197 (355)
T d2bbkh_         151 -----------------YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP----------------EDEFLI  197 (355)
T ss_dssp             -----------------EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC----------------TTSCBC
T ss_pred             -----------------ceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc----------------eeccee
Confidence                             00001123344566677766666555555566655544322                122235


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece--------eceeEEEEEECCCCCEEEEecCC--------
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR--------IESFYVKSEICPNASHILSGSSD--------  341 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~g~~d--------  341 (512)
                      ....+.+++..++.++.++.+++|++.......+.....+.        .......+++++++..++....+        
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  277 (355)
T d2bbkh_         198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT  277 (355)
T ss_dssp             SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred             eeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecC
Confidence            55677788888899999999999998764332222221111        00111237888999888765433        


Q ss_pred             --CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCC-eEEEEeCCCcEEEEeCCCCccccccc
Q 010390          342 --GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAG-KIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       342 --g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                        ..|.+||..+++.. ..+. +...+.+++|+|||.. ++++++.|+.|++||+++++.++.+.
T Consensus       278 ~~~~v~v~d~~t~~~~-~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         278 ASRFVVVLDAKTGERL-AKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             CEEEEEEEETTTCCEE-EEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CCCeEEEEeCCCCcEE-EEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence              36999999987653 3333 3456889999999943 45677889999999999999877643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.2e-18  Score=159.75  Aligned_cols=263  Identities=10%  Similarity=0.053  Sum_probs=169.7

Q ss_pred             CccCCcceEEEEEecCCCcEE-EEeeCCCcEEEEECCCCCCccccccccccccceeccccC-----CCcEEEEEEecCCC
Q 010390           48 GEETPPLAVSFCKTSKNSHIF-AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-----QNAIFDLCWIKEDT  121 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~l-atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~s~~~~  121 (512)
                      ++...+.+++|   +|||+++ ++++.++.|.+||+.+++.             +..+..+     ...+..++|+|+++
T Consensus        31 ~~~~~~~~i~~---spDg~~l~v~~~~~~~v~v~D~~t~~~-------------~~~~~~~~~~~~~~~~~~v~~s~dg~   94 (337)
T d1pbyb_          31 DAGPTPMVPMV---APGGRIAYATVNKSESLVKIDLVTGET-------------LGRIDLSTPEERVKSLFGAALSPDGK   94 (337)
T ss_dssp             TCTTCCCCEEE---CTTSSEEEEEETTTTEEEEEETTTCCE-------------EEEEECCBTTEEEECTTCEEECTTSS
T ss_pred             CCCCCccEEEE---CCCCCEEEEEECCCCeEEEEECCCCcE-------------EEEEecCCCcccccceeeEEEcCCCc
Confidence            34456788988   9999987 5667899999999988754             2223222     23445789999999


Q ss_pred             EEEEEe------------CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390          122 NILTAS------------GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN  189 (512)
Q Consensus       122 ~l~s~~------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  189 (512)
                      +++++.            .+..+.+||..+++....+.. ...+.+++|+|++ .++++++.  .+.+||..+.+.....
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~--~~~~~d~~~~~~~~~~  170 (337)
T d1pbyb_          95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDG-SKLYGLGR--DLHVMDPEAGTLVEDK  170 (337)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTS-SCEEEESS--SEEEEETTTTEEEEEE
T ss_pred             EEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCC-CEEEEEcC--CcceeeeecCcEEEEe
Confidence            998775            367899999999998888874 4568889999998 77777764  4778998766433221


Q ss_pred             cccceeeecccccccccccccccceeccccccc--EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc
Q 010390          190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS--ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS  267 (512)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  267 (512)
                      .........      ..............+...  ........+...... +..++.+.+||..++.....         
T Consensus       171 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------  234 (337)
T d1pbyb_         171 PIQSWEAET------YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP-TAYRTGLLTMDLETGEMAMR---------  234 (337)
T ss_dssp             CSTTTTTTT------BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG-GGEEEEEEEEETTTCCEEEE---------
T ss_pred             ecCCccccc------eecCCcceeeccccccceeeeeeeeeeeccceeee-cccCccEEEEEcCCCcEEEE---------
Confidence            111000000      000000000000011111  111111122222222 23466799999988765543         


Q ss_pred             ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390          268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW  347 (512)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  347 (512)
                       ....+...+..+.+++++.+++.+  ++.|++||+.+..  .+..+.   ....+.+++|+|||++|++++.++.|++|
T Consensus       235 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~--~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~  306 (337)
T d1pbyb_         235 -EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA--SIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAY  306 (337)
T ss_dssp             -EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE--EEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred             -EecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc--EEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence             234455678889999999988776  5899999987643  222222   22346679999999999999999999999


Q ss_pred             ecCCCCC
Q 010390          348 QVNKPQA  354 (512)
Q Consensus       348 ~~~~~~~  354 (512)
                      |..+.+.
T Consensus       307 D~~t~~~  313 (337)
T d1pbyb_         307 DAETLEK  313 (337)
T ss_dssp             ETTTCCE
T ss_pred             ECCCCcE
Confidence            9998765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=2.2e-19  Score=165.32  Aligned_cols=282  Identities=7%  Similarity=0.003  Sum_probs=183.7

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccc
Q 010390          114 LCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAE  192 (512)
Q Consensus       114 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  192 (512)
                      ++|++++++|++++.|++|.|||+.+++.+.++. .|...+.+++|+|++..+++++..++.|.+||+.+++........
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4688999999999999999999999999998876 456678899999998445577778999999999876543211100


Q ss_pred             ceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee-----------cCCeEEEEeccCccceecccC
Q 010390          193 SFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA-----------VNSIVKFWDTRNLKAQITQAW  261 (512)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~-----------~dg~i~iwd~~~~~~~~~~~~  261 (512)
                                           .....+...+..++|+|+|+.+++++.           .+..+.+||..+++.....  
T Consensus        82 ---------------------~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--  138 (346)
T d1jmxb_          82 ---------------------SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--  138 (346)
T ss_dssp             ---------------------CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--
T ss_pred             ---------------------ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE--
Confidence                                 001112234567899999999887642           4677889998876654321  


Q ss_pred             CCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-----------
Q 010390          262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-----------  330 (512)
Q Consensus       262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----------  330 (512)
                             ........+..+.+++++.+++.+   +.+.+|++.+..  ....+..+.   ....+.++|           
T Consensus       139 -------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  203 (346)
T d1jmxb_         139 -------RTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGK--YTVALPLRN---WNRKGYSAPDVLYFWPHQSP  203 (346)
T ss_dssp             -------EEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCC--EEEEECSTT---CCCTTBCCCBCCCCCCCCCT
T ss_pred             -------EeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCC--EEEEEecCC---CccceEEeccccEEEEEecC
Confidence                   112222346667777777766543   467888875432  222221110   001112222           


Q ss_pred             ---------------CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          331 ---------------NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       331 ---------------~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                                     ....++++..++.+.+|++.++.........|...+..+.+++++ .+++.... +.|.+||+.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~v~v~d~~~  281 (346)
T d1jmxb_         204 RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD-PNQIYGVL-NRLAKYDLKQ  281 (346)
T ss_dssp             TCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSC-TTEEEEEE-SEEEEEETTT
T ss_pred             CCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCC-CEEEEecC-CeEEEEECCC
Confidence                           233344455566788899888776555667788899999999998 66666654 5799999999


Q ss_pred             CcccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCc
Q 010390          396 SRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP  462 (512)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  462 (512)
                      ++.+.....                     +...+     .++|+|||+.+.++... ..+.++...
T Consensus       282 ~~~~~~~~~---------------------~~~~~-----~va~s~DG~~l~v~~~d-~~v~v~D~~  321 (346)
T d1jmxb_         282 RKLIKAANL---------------------DHTYY-----CVAFDKKGDKLYLGGTF-NDLAVFNPD  321 (346)
T ss_dssp             TEEEEEEEC---------------------SSCCC-----EEEECSSSSCEEEESBS-SEEEEEETT
T ss_pred             CcEEEEEcC---------------------CCCEE-----EEEEcCCCCEEEEEeCC-CcEEEEECc
Confidence            886654221                     11112     67889999888877543 345556554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.2e-17  Score=150.96  Aligned_cols=269  Identities=9%  Similarity=0.046  Sum_probs=173.3

Q ss_pred             cCCccCCcceEEEEEecCCCcEEEEe-eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390           46 HHGEETPPLAVSFCKTSKNSHIFAVS-DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL  124 (512)
Q Consensus        46 ~~gh~~~v~~v~~~~~s~~~~~latg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  124 (512)
                      ...|.+.|.+|+|   ||||++|+++ ..|+.|++|++.......          .......+...+..++|+|||++|+
T Consensus        32 ~~~~~~~v~~la~---spDG~~L~v~~~~d~~i~~~~i~~~~~~~----------~~~~~~~~~~~p~~l~~spDg~~l~   98 (333)
T d1ri6a_          32 VVDVPGQVQPMVV---SPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------TFAAESALPGSLTHISTDHQGQFVF   98 (333)
T ss_dssp             EEECSSCCCCEEE---CTTSSEEEEEETTTTEEEEEEECTTTCCE----------EEEEEEECSSCCSEEEECTTSSEEE
T ss_pred             EEcCCCCEeEEEE---eCCCCEEEEEECCCCeEEEEEEeCCCCcE----------EEeeecccCCCceEEEEcCCCCEEe
Confidence            3457888999999   9999988655 458999999987653211          1111223445677899999999999


Q ss_pred             EEeC-CCcEEEEeCCCCeeeec--ccCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390          125 TASG-DQTIKIWDAEKKKCTGA--LMGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       125 s~~~-dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      +++. ++.|.+|+.........  ...+...+.++.++|++ +.++.++ .+..|.+|+...........          
T Consensus        99 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------  167 (333)
T d1ri6a_          99 VGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQD----------  167 (333)
T ss_dssp             EEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEE----------
T ss_pred             ecccCCCceeeeccccccceecccccCCCccceEEEeeecc-eeeeccccccceeeEEEeccCCcceeee----------
Confidence            8875 67899998776654332  34566778899999998 5555554 55679999976543221110          


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                 ..............++|++++..++.+....+...+|+................ .............+
T Consensus       168 -----------~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  235 (333)
T d1ri6a_         168 -----------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM-MPENFSDTRWAADI  235 (333)
T ss_dssp             -----------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC-SCTTCCSCCCEEEE
T ss_pred             -----------ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeee-eecCCCccccceeE
Confidence                       000111233456889999999999887777788888887644322211000000 00112223446678


Q ss_pred             EeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEecCC
Q 010390          281 SQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQVNK  351 (512)
Q Consensus       281 ~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~  351 (512)
                      ++++++++++... .++.+.+|++...... ...............++|+|||++|+++ ..++.|++|+++.
T Consensus       236 ~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         236 HITPDGRHLYACDRTASLITVFSVSEDGSV-LSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCC-EEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EEecccCceeeecccCCeEEEEEEcCCCCE-EEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            8999999776654 6689999998653322 2222212222335568999999987665 4568899997653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=2.6e-15  Score=139.40  Aligned_cols=286  Identities=10%  Similarity=0.028  Sum_probs=178.2

Q ss_pred             eeeeeEeecCCccCCcceEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceeccccC
Q 010390           38 EIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH  107 (512)
Q Consensus        38 ~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h  107 (512)
                      ..+.++.++.++..+  .+.|   +|||++|++++          .++.|.+||..+++.             +..+..+
T Consensus        55 ~tg~~~~~~~~~~~~--~~a~---SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~-------------~~~~~~~  116 (373)
T d2madh_          55 GSGSILGHVNGGFLP--NPVA---AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-------------IADIELP  116 (373)
T ss_pred             CCCCEEEEEeCCCCc--cEEE---cCCCCEEEEEeecCCcccccccceEEEEEECCCCcE-------------EEEEecC
Confidence            344555555555544  6777   99999999874          457899999988754             3333333


Q ss_pred             CCc-------EEEEEEecCCCEEEEEe--CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390          108 QNA-------IFDLCWIKEDTNILTAS--GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW  178 (512)
Q Consensus       108 ~~~-------V~~l~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  178 (512)
                      ...       ...+.|+++++.++...  .++.+.+|+..+.+.....    ....++.++|++...+++.+.|+.+.+|
T Consensus       117 ~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~  192 (373)
T d2madh_         117 DAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKT  192 (373)
T ss_pred             CcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEE
Confidence            322       24578999998776554  4578899998887655433    3466888999997788899999999999


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      +..............                     ...........+.+.+++..++  .+.++.+.+|+.........
T Consensus       193 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~  249 (373)
T d2madh_         193 DHAGGAAGAGLVGAM---------------------LTAAQNLLTQPAQANKSGRIVW--PVYSGKILQADISAAGATNK  249 (373)
T ss_pred             EcCCceeeEEEeeec---------------------cccCccceeeeEEECCCceEEE--ecCCceEEEEEcCCCeEEEE
Confidence            988665433211000                     0011112233444555554443  33688999999887654322


Q ss_pred             ccCCCccc-cccccccccCeeEEEeCCCCCEE----------EEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEE
Q 010390          259 QAWPHAES-SSAKETRLHGISSLSQDSNGVFL----------TASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE  327 (512)
Q Consensus       259 ~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l----------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  327 (512)
                      ........ .............+++++++..+          +....++.+.+||..+.+  .+..+.   ....+..++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~--~~~~~~---~~~~~~~~a  324 (373)
T d2madh_         250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ--TSSQIS---LGHDVDAIS  324 (373)
T ss_pred             EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCc--EEEEec---CCCCeeEEE
Confidence            21111000 00001111223445555555444          445566789999986643  233222   223466799


Q ss_pred             ECCCCCE--EEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCC
Q 010390          328 ICPNASH--ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN  374 (512)
Q Consensus       328 ~s~~~~~--l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~  374 (512)
                      |+|||+.  +++++.|+.|++||+.+++. ...+..+....+.+++.++
T Consensus       325 ~spDG~~~l~vt~~~d~~v~v~D~~tg~~-~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQ-DQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEECCCCCE-EEEECCCCCCCcEEEEecC
Confidence            9999984  46889999999999999887 5777777777777777553

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=4.6e-16  Score=143.49  Aligned_cols=291  Identities=12%  Similarity=0.070  Sum_probs=167.7

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEe----------eCCCcEEEEECCCCCCccccccccccccceeccccCCCc
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVS----------DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA  110 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  110 (512)
                      .++.....+..  ..++|   ||||++|++.          ..|+.|++||..+++........      ..........
T Consensus        39 ~~~~~~~~g~~--~~~a~---SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~------~~~~~~~~~~  107 (355)
T d2bbkh_          39 RVIGMIDGGFL--PNPVV---ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP------DAPRFLVGTY  107 (355)
T ss_dssp             EEEEEEEECSS--CEEEE---CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET------TCCCCCBSCC
T ss_pred             cEEEEEECCCC--CceEE---cCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecC------CcceeecCCC
Confidence            33444443433  36777   9999988764          44789999999887542111000      0000111223


Q ss_pred             EEEEEEecCCCEEEEEe--CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390          111 IFDLCWIKEDTNILTAS--GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       111 V~~l~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  188 (512)
                      ...++|+|++++++.+.  .+..+.+|+..+++.+..+..+.... .   .+.+....++.+.|+...++..........
T Consensus       108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~  183 (355)
T d2bbkh_         108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH-I---FPTAPDTFFMHCRDGSLAKVAFGTEGTPEI  183 (355)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE-E---EEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce-E---eecCCcceEEEcCCCCEEEEEecCCCeEEE
Confidence            35689999999988764  46789999999999887776443211 1   111113334444444444444332221110


Q ss_pred             ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC-Ccccc
Q 010390          189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP-HAESS  267 (512)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~-~~~~~  267 (512)
                      ....                     .....+...+....+.+++..++.+ +.++.+++|++..+......... +....
T Consensus       184 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  241 (355)
T d2bbkh_         184 THTE---------------------VFHPEDEFLINHPAYSQKAGRLVWP-TYTGKIHQIDLSSGDAKFLPAVEALTEAE  241 (355)
T ss_dssp             EECC---------------------CCSCTTSCBCSCCEEETTTTEEEEE-BTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred             Eecc---------------------cccceecceeeeccccCCCCeEEEe-cCCCeEEEEecCCCcEEEEeccCCcccce
Confidence            0000                     0001122234455677777777764 47999999999877643321110 00000


Q ss_pred             ccccccccCeeEEEeCCCCCEEEEEecC----------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC--EE
Q 010390          268 SAKETRLHGISSLSQDSNGVFLTASCMD----------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS--HI  335 (512)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l  335 (512)
                      ............+++++++..++....+          +.|.+||..+.+  .+..+..   ...+.+++|+|||+  ++
T Consensus       242 ~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~--~~~~~~~---~~~~~~~a~spDG~~~l~  316 (355)
T d2bbkh_         242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--RLAKFEM---GHEIDSINVSQDEKPLLY  316 (355)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEE---EEEECEEEECCSSSCEEE
T ss_pred             EeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc--EEEEecC---CCCEEEEEEcCCCCeEEE
Confidence            0111122345668999999988876544          379999987643  3333322   23456799999997  45


Q ss_pred             EEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCC
Q 010390          336 LSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN  374 (512)
Q Consensus       336 ~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~  374 (512)
                      ++++.|+.|++||+.+++. +..+.++......+.+.++
T Consensus       317 v~~~~d~~i~v~D~~tg~~-~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         317 ALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEETTTTEEEEEETTTCCE-EEEECCCCSSCCEEECCCC
T ss_pred             EEECCCCEEEEEECCCCCE-EEEEeCcCCCccEEEeCCC
Confidence            6778899999999999876 4566666555555655543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.68  E-value=4.2e-15  Score=142.62  Aligned_cols=335  Identities=8%  Similarity=-0.010  Sum_probs=180.3

Q ss_pred             ecCCccCCcceEEEEEecCCCcEEEEeeC---------CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE
Q 010390           45 EHHGEETPPLAVSFCKTSKNSHIFAVSDE---------DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC  115 (512)
Q Consensus        45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  115 (512)
                      .+.+|...|.+++|   ||||++||.++.         ++.+.|||+.++.              +..+..|.+.+..+.
T Consensus        56 ~~~~~~~~i~~~~~---SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~--------------~~~l~~~~~~~~~~~  118 (470)
T d2bgra1          56 TFDEFGHSINDYSI---SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ--------------LITEERIPNNTQWVT  118 (470)
T ss_dssp             TTTTSSSCCCEEEE---CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE--------------ECCSSCCCTTEEEEE
T ss_pred             hhhhccCccceeEE---CCCCCEEEEEECCcceeeeccCceEEEEECCCCc--------------ccccccCCccccccc
Confidence            34567788999999   999999998743         5778999998763              556778899999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEeCCCCeeeecccC------------------cCCCEEEEEeeCCCCCeEEEEeCCC-cEE
Q 010390          116 WIKEDTNILTASGDQTIKIWDAEKKKCTGALMG------------------HTGSIKSLCSHPTNSDILVSGSRDG-SFA  176 (512)
Q Consensus       116 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------h~~~v~~l~~~~~~~~~l~s~~~dg-~i~  176 (512)
                      |||||++||.. .++.+.+|+..+++..+....                  ..+....+.|+|++ ..|+....|. .+.
T Consensus       119 ~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~  196 (470)
T d2bgra1         119 WSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVP  196 (470)
T ss_dssp             ECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCC
T ss_pred             cccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCC-CccceeEecCCcCc
Confidence            99999999986 467899999998876554322                  12334567899999 7777776553 355


Q ss_pred             EEeCCCCCCCCCccccceeee---------------ccccccccccccc----ccceecccccccEEEEEEeecCCEEEE
Q 010390          177 IWDLRCKSSPKSNCAESFVFS---------------SAVVKGAHLLSQS----KRVSRRKAASMSITSVLYLKDEVSIAT  237 (512)
Q Consensus       177 vwd~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~  237 (512)
                      .|++.................               .............    ............+..+.|.+++..++.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  276 (470)
T d2bgra1         197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ  276 (470)
T ss_dssp             EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred             eEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence            555432111110000000000               0000000000000    000011223345678899998876665


Q ss_pred             EeecCC---eEEEE--eccCccceecccCCCcc--ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc
Q 010390          238 ASAVNS---IVKFW--DTRNLKAQITQAWPHAE--SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP  310 (512)
Q Consensus       238 ~g~~dg---~i~iw--d~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  310 (512)
                      .....+   .+.++  |..++............  ...-...+........+..++.+++.+..+|..++|.+.......
T Consensus       277 ~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~  356 (470)
T d2bgra1         277 WLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC  356 (470)
T ss_dssp             EEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCC
T ss_pred             EeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCce
Confidence            432222   23444  44443332211100000  000011111222233334444556677788876666543322222


Q ss_pred             eEeeeeceeceeEEEEEECCCCCEE-EEecCC----CCEEEEec--CCCCC---CCceeccccCCeEEEEeCCCCCCeEE
Q 010390          311 IQHFSGCRIESFYVKSEICPNASHI-LSGSSD----GNAYVWQV--NKPQA---DPIKLKSHDGEVTAVNWCPNEAGKIV  380 (512)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~d----g~i~iw~~--~~~~~---~~~~~~~h~~~v~~v~~~~~~~~~l~  380 (512)
                      .....+.   ..+..+ ++++++.+ +++..+    +.-+||.+  .....   ....+..|...+.+++||||| ++++
T Consensus       357 ~~lt~g~---~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdg-ky~~  431 (470)
T d2bgra1         357 TFITKGT---WEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEA-KYYQ  431 (470)
T ss_dssp             EESCCSS---SCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTS-SEEE
T ss_pred             eeeccCC---eeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCC-CEEE
Confidence            2222221   112222 23334433 333322    22345544  33222   112244688889999999999 6655


Q ss_pred             -EEe--CCCcEEEEeCCCCccccccc
Q 010390          381 -TSS--DDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       381 -s~~--~dg~i~vwd~~~~~~~~~~~  403 (512)
                       +++  ..-.+.+|+..+++.+..++
T Consensus       432 ~~~s~~~~P~~~l~~~~~g~~v~~le  457 (470)
T d2bgra1         432 LRCSGPGLPLYTLHSSVNDKGLRVLE  457 (470)
T ss_dssp             EEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             EEecCCCCCeEEEEECCCCCEEEEEe
Confidence             443  44569999999999887654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=8.6e-16  Score=142.46  Aligned_cols=298  Identities=9%  Similarity=-0.020  Sum_probs=177.6

Q ss_pred             CccCCcceEEEEEecCCCcE--EEE-eeCCCc--EEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           48 GEETPPLAVSFCKTSKNSHI--FAV-SDEDGY--VSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        48 gh~~~v~~v~~~~~s~~~~~--lat-g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      .+.++...++.   .++++.  ++. ...+|.  |.+||..+++.             +.....+...  .++|+|||+.
T Consensus        17 ~~~g~~~~~a~---~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~-------------~~~~~~~~~~--~~a~spDg~~   78 (368)
T d1mdah_          17 ASDGSSCDHGP---GAISRRSHITLPAYFAGTTENWVSCAGCGVT-------------LGHSLGAFLS--LAVAGHSGSD   78 (368)
T ss_dssp             CCCCCCBCCCC---CCCTTEEEEEECTTTCSSEEEEEEETTTTEE-------------EEEEEECTTC--EEEECTTSSC
T ss_pred             ccCCCcccccc---CCCCcceeEEeeccCCCcceEEEEeCCCCcE-------------EEEEeCCCCC--cceECCCCCE
Confidence            35566666666   778874  332 345555  66668766532             4445555544  5899999999


Q ss_pred             EEEEe----------CCCcEEEEeCCCCeeeecccCcCC-------CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390          123 ILTAS----------GDQTIKIWDAEKKKCTGALMGHTG-------SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS  185 (512)
Q Consensus       123 l~s~~----------~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  185 (512)
                      |++.+          .|+.|.+||..+++.+..+..+..       ....++|+|++..++++...++.+.+||+.+.+.
T Consensus        79 i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~  158 (368)
T d1mdah_          79 FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence            98754          367899999999988877643321       2346899999944444445679999999987543


Q ss_pred             CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390          186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE  265 (512)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  265 (512)
                      ....                           ..+..    ....+.+...+++.+.||.+.+++..............  
T Consensus       159 ~~~~---------------------------~~~~~----~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~--  205 (368)
T d1mdah_         159 DQLT---------------------------KSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ--  205 (368)
T ss_dssp             EEEE---------------------------ECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC--
T ss_pred             eEEe---------------------------eccCc----ceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc--
Confidence            2211                           00000    11223333333445567888888776554332221111  


Q ss_pred             ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece--------eceeEEEEEECCCCCEEEE
Q 010390          266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR--------IESFYVKSEICPNASHILS  337 (512)
Q Consensus       266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~  337 (512)
                         ....+...+....+.+++..+...  .+.+.++++...............        .......+++++++..++.
T Consensus       206 ---~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v  280 (368)
T d1mdah_         206 ---CTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             ---SCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             ---cccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence               122333445567777777666544  455666665432221111111100        0000123678888887755


Q ss_pred             ecCC---------CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCC-eEEEEeCCCcEEEEeCCCCccccccc
Q 010390          338 GSSD---------GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAG-KIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       338 g~~d---------g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      ...+         ..|.+||..+++.. ..+ .+...+.+++|+||+.. +++++..|+.|++||..+++.+..+.
T Consensus       281 ~~~~~~~~~~~~~~~v~v~D~~t~~~~-~~~-~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         281 LTVEHSRSCLAAAENTSSVTASVGQTS-GPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEE-ECC-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             EecCCCceeecCCceEEEEECCCCcEe-EEe-cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence            4322         35899999888653 222 24457899999999843 45677889999999999999877644

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.63  E-value=5.1e-15  Score=142.05  Aligned_cols=170  Identities=9%  Similarity=0.066  Sum_probs=114.1

Q ss_pred             ceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-----
Q 010390           54 LAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-----  128 (512)
Q Consensus        54 ~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-----  128 (512)
                      ..+.|   .+|++++..  .++.|.+||+.++....        ...-..+..|...|.++.||||+++|+.++.     
T Consensus        20 ~~~~W---~~d~~~~~~--~~~~~~~~~~~t~~~~~--------~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~   86 (470)
T d2bgra1          20 YSLRW---ISDHEYLYK--QENNILVFNAEYGNSSV--------FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW   86 (470)
T ss_dssp             CCCEE---CSSSEEEEE--SSSCEEEEETTTCCEEE--------EECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred             cCCEe---CCCCEEEEE--cCCcEEEEECCCCCEEE--------EEchhhhhhccCccceeEECCCCCEEEEEECCccee
Confidence            45667   889988875  47889999999875311        0112356677889999999999999998753     


Q ss_pred             ----CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc--eeeeccccc
Q 010390          129 ----DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES--FVFSSAVVK  202 (512)
Q Consensus       129 ----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~  202 (512)
                          ++.+.|||+.+++. ..+..+...+..+.|+|+| +.+|.. .++.+.+|+..++..........  .....    
T Consensus        87 r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g----  159 (470)
T d2bgra1          87 RHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNG----  159 (470)
T ss_dssp             SSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEES----
T ss_pred             eeccCceEEEEECCCCcc-cccccCCccccccccccCc-ceeeEe-ecccceEEECCCCceeeeeeccCCCccccc----
Confidence                56789999999875 4577788999999999999 777775 46789999998776443221100  00000    


Q ss_pred             ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390          203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDT  250 (512)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~  250 (512)
                            ... ........+....+.|+|||+.++.....+..+..|++
T Consensus       160 ------~~d-~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         160 ------ITD-WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             ------BCC-HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             ------ccc-eeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence                  000 00001122345567899999999987655554554443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.56  E-value=9.8e-16  Score=140.77  Aligned_cols=327  Identities=9%  Similarity=-0.074  Sum_probs=186.8

Q ss_pred             EEEeeCCCcEEEEECCCCCCcccccc----------ccccc-------cceeccccCCCcEEEEEEecCCCEEEEE-eCC
Q 010390           68 FAVSDEDGYVSLFDSRRKLPSFACHR----------ENAEK-------ARISDWVAHQNAIFDLCWIKEDTNILTA-SGD  129 (512)
Q Consensus        68 latg~~dg~i~iwd~~~~~~~~~~~~----------~~~~~-------~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~d  129 (512)
                      +++|+.+|.|+||++.+++....+..          -..+.       .....-..|.........+|||++|+.. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            67788999999999877643221110          00000       0111123355566667778999999755 468


Q ss_pred             CcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEE------------------EeCCCCCCCCCcc
Q 010390          130 QTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAI------------------WDLRCKSSPKSNC  190 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v------------------wd~~~~~~~~~~~  190 (512)
                      +.|.++|+.++++...+. .+...+..++|+|++....+++..+..+.+                  +|..+.+.     
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v-----  168 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV-----  168 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE-----
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee-----
Confidence            899999999998877664 356789999999988544444443334432                  22221110     


Q ss_pred             ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390          191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK  270 (512)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  270 (512)
                                             ............+.++|+|+++++++.....+..++..+.......           
T Consensus       169 -----------------------~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i-----------  214 (441)
T d1qnia2         169 -----------------------AWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWV-----------  214 (441)
T ss_dssp             -----------------------EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEE-----------
T ss_pred             -----------------------eEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEE-----------
Confidence                                   0111123457789999999999987654444444443333222110           


Q ss_pred             cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecCCCCEEEEec
Q 010390          271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSSDGNAYVWQV  349 (512)
Q Consensus       271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~  349 (512)
                       .....-..+.+.++|+++..+ .++.+.+++...  ...+..+....   ....+.++|||+++ +++..+++|.+||+
T Consensus       215 -~v~n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~--~~v~~~IPvgk---sPhGv~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         215 -VVFNVERIAAAVKAGNFKTIG-DSKVPVVDGRGE--SEFTRYIPVPK---NPHGLNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             -EEEEHHHHHHHHHTTCCBCCT-TCCCCEEECSSS--CSSEEEECCBS---SCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             -EeCCccceEEEecCCCEEEeC-CCCcEEEEcccC--CceEEEEeCCC---CccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence             001112334566788877654 456676766433  22333333222   12348999999987 56778999999998


Q ss_pred             CCCCCC-------Cceecccc---CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchh
Q 010390          350 NKPQAD-------PIKLKSHD---GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTEC  419 (512)
Q Consensus       350 ~~~~~~-------~~~~~~h~---~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (512)
                      .+....       ...+.++.   -.....+|.+++ +.+.+...|..|..|++....  +.+..... ..++.      
T Consensus       288 ~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw~~~~~~--~~~~~~~~-~~v~~------  357 (441)
T d1qnia2         288 DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNIADAI--KHYNGDRV-NYIRQ------  357 (441)
T ss_dssp             GGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEEHHHHH--HHHTTCCC-CCEEE------
T ss_pred             ehhhhHhhccCCcceEEEeecccccCcccceecCCc-eEEEcccccceEEEeccchhh--hhhccCCC-ceeEe------
Confidence            753211       01111111   124556899998 788899999999999985321  11111110 00100      


Q ss_pred             ccccc-CCCCcccccCCCCcCCCchhcccCCCCC
Q 010390          420 RKLFM-NGEPGWLAKGSDRSYNSDDVLNQINSSD  452 (512)
Q Consensus       420 ~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~  452 (512)
                       ++-. ...+|..... ..+++|||+++++....
T Consensus       358 -~~~v~y~~GH~~~~~-~~t~~pdGk~l~s~~k~  389 (441)
T d1qnia2         358 -KLDVQYQPGHNHASL-TESRDADGKWLVVLSKF  389 (441)
T ss_dssp             -EEECSSCEEEEEETT-TTSTTCCCCEEEEEESC
T ss_pred             -ccccccCCCCCcccc-ccccCCCCcEEEecCcc
Confidence             0000 0112333344 67899999999887433

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=7.8e-14  Score=129.01  Aligned_cols=270  Identities=13%  Similarity=0.018  Sum_probs=161.7

Q ss_pred             eeEeecCCccCCcceEEEEEecCCCcEEEEee----------CCCcEEEEECCCCCCccccccccccccceeccccCCCc
Q 010390           41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA  110 (512)
Q Consensus        41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  110 (512)
                      .+.....++..+  .+.+   +|||++|++.+          .|+.|.+||..+.+........  .    .........
T Consensus        57 ~~~~~~~~~~~~--~~a~---spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p--~----~~~~~~g~~  125 (368)
T d1mdah_          57 VTLGHSLGAFLS--LAVA---GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP--D----APRFSVGPR  125 (368)
T ss_dssp             EEEEEEEECTTC--EEEE---CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET--T----SCSCCBSCC
T ss_pred             cEEEEEeCCCCC--cceE---CCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCC--c----cceecccCC
Confidence            344444444443  5677   99999888754          4778999999877542111000  0    000001112


Q ss_pred             EEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390          111 IFDLCWIKEDTNILTAS-GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN  189 (512)
Q Consensus       111 V~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  189 (512)
                      ...++|+|||++|+++. .++.+.+||+.+++....+..+....    +.+.+...++..+.||.+.+|++.........
T Consensus       126 p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~  201 (368)
T d1mdah_         126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             ccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeee
Confidence            23589999999998776 57999999999999888876654432    23344467888888999999988765433211


Q ss_pred             cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc-c
Q 010390          190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS-S  268 (512)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~  268 (512)
                      ...                     .....+...+..+.+.+++..+..   .++.+.+++.................. .
T Consensus       202 ~~~---------------------~~~~~~~~~~~~~~~~~~g~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  257 (368)
T d1mdah_         202 VGA---------------------QCTGAQNCSSQAAQANYPGMLVWA---VASSILQGDIPAAGATMKAAIDGNESGRK  257 (368)
T ss_dssp             CCC---------------------CSCTTSCBCSCCEEETTTTEEEEC---BSSCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred             eec---------------------ccccccccceeecccccCcEEEEe---cCCCEEEEeecCCceEEEeecccccceee
Confidence            100                     011122334445566666655543   356677777665544332211111000 0


Q ss_pred             cccccccCeeEEEeCCCCCEEEEEecC---------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE--EEE
Q 010390          269 AKETRLHGISSLSQDSNGVFLTASCMD---------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH--ILS  337 (512)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l~~  337 (512)
                      ...........+++++++..+++...+         ..|.+||..+.+  .+..+..   ...+..++|+|||+.  +++
T Consensus       258 ~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~--~~~~~~~---~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--TSGPISN---GHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--EEECCEE---EEEECEEEECCSSSCEEEEE
T ss_pred             eeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc--EeEEecC---CCceeEEEECCCCCEEEEEE
Confidence            011122334568889998877765433         358899986643  3333322   234667999999973  467


Q ss_pred             ecCCCCEEEEecCCCCC
Q 010390          338 GSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       338 g~~dg~i~iw~~~~~~~  354 (512)
                      +..++.|++||..+++.
T Consensus       333 ~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         333 SAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             ETTTTEEEEEESSSCEE
T ss_pred             eCCCCeEEEEECCCCCE
Confidence            77889999999998876

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.36  E-value=1.6e-13  Score=125.92  Aligned_cols=271  Identities=9%  Similarity=-0.008  Sum_probs=167.7

Q ss_pred             eEEEEEecCCCcEEEEe-eCCCcEEEEECCCCCCccccccccccccceecc-ccCCCcEEEEEEecCCCE--EEEEeCCC
Q 010390           55 AVSFCKTSKNSHIFAVS-DEDGYVSLFDSRRKLPSFACHRENAEKARISDW-VAHQNAIFDLCWIKEDTN--ILTASGDQ  130 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s~~~~~--l~s~~~dg  130 (512)
                      .+.+...+|||++|++. ..++.|.++|+++.+.             ...+ ..+...+..++|+|+++.  ++..+.+.
T Consensus        73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~-------------~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~  139 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDKANTRVARIRLDIMKT-------------DKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFV  139 (441)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEE-------------EEEEECTTCCCEEEEEECCSSBCCEEEEEECSC
T ss_pred             CcceecccCCCCEEEEEcCCCCEEEEEECCCCcE-------------eeEEecCCCCCccceEEeccCCEEEEEeccCCc
Confidence            44554458999988665 5788999999987643             2211 235678999999999884  44444332


Q ss_pred             -----------------cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC-cEEEEeCCCCCCCCCcccc
Q 010390          131 -----------------TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG-SFAIWDLRCKSSPKSNCAE  192 (512)
Q Consensus       131 -----------------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~  192 (512)
                                       .+..+|..+.+....+... +....+.|+|++ .++++.+.+. .+..++..+.......   
T Consensus       140 v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~d~i---  214 (441)
T d1qnia2         140 IPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDRDWV---  214 (441)
T ss_dssp             EESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSBCEE---
T ss_pred             ccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCC-CEEEEEecCCCceEEEeccCcceEEEE---
Confidence                             2355788887776666533 457788999999 6666666543 3333333222211100   


Q ss_pred             ceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc
Q 010390          193 SFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET  272 (512)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  272 (512)
                                               ........+.+.++|+++.+ + .++.+.+++...........           .
T Consensus       215 -------------------------~v~n~p~~~~~~~dGk~~~v-~-~~~v~vvd~~~~~~v~~~IP-----------v  256 (441)
T d1qnia2         215 -------------------------VVFNVERIAAAVKAGNFKTI-G-DSKVPVVDGRGESEFTRYIP-----------V  256 (441)
T ss_dssp             -------------------------EEEEHHHHHHHHHTTCCBCC-T-TCCCCEEECSSSCSSEEEEC-----------C
T ss_pred             -------------------------EeCCccceEEEecCCCEEEe-C-CCCcEEEEcccCCceEEEEe-----------C
Confidence                                     00001122334677877654 3 36777777766554443221           1


Q ss_pred             cccCeeEEEeCCCCCEEEE-EecCCeEEEEEcccCCC------CceEeeeece-eceeEEEEEECCCCCEEEEecCCCCE
Q 010390          273 RLHGISSLSQDSNGVFLTA-SCMDHRIYLYNVLQLDK------GPIQHFSGCR-IESFYVKSEICPNASHILSGSSDGNA  344 (512)
Q Consensus       273 ~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~------~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i  344 (512)
                       ......+.++|||+++++ +..+++|.+||+.+...      .....+.+.. ..-.....+|+++|..+.+...|..|
T Consensus       257 -gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v  335 (441)
T d1qnia2         257 -PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQV  335 (441)
T ss_dssp             -BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             -CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceE
Confidence             123577999999998765 56889999999865321      1111111111 11123346899999999999999999


Q ss_pred             EEEecCCC------C---CCCce-----eccccCCeEEEEeCCCCCCeEEEEe
Q 010390          345 YVWQVNKP------Q---ADPIK-----LKSHDGEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       345 ~iw~~~~~------~---~~~~~-----~~~h~~~v~~v~~~~~~~~~l~s~~  383 (512)
                      ..|++...      .   .....     ..+|...+.+..++||| ++|++++
T Consensus       336 ~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG-k~l~s~~  387 (441)
T d1qnia2         336 CKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG-KWLVVLS  387 (441)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC-CEEEEEE
T ss_pred             EEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC-cEEEecC
Confidence            99997521      1   11111     25787788888899999 9999994

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.30  E-value=1.6e-09  Score=96.31  Aligned_cols=240  Identities=8%  Similarity=-0.018  Sum_probs=152.5

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT  131 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~  131 (512)
                      .+..+++   +|||+++++...++.|..||.+..               ...+......+.+++|.++|+++++...++.
T Consensus        29 ~~e~iAv---~pdG~l~vt~~~~~~I~~i~p~g~---------------~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~   90 (302)
T d2p4oa1          29 FLENLAS---APDGTIFVTNHEVGEIVSITPDGN---------------QQIHATVEGKVSGLAFTSNGDLVATGWNADS   90 (302)
T ss_dssp             CEEEEEE---CTTSCEEEEETTTTEEEEECTTCC---------------EEEEEECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEE---CCCCCEEEEeCCCCEEEEEeCCCC---------------EEEEEcCCCCcceEEEcCCCCeEEEecCCce
Confidence            4667887   999999999999999988886543               2233455678999999999999998888888


Q ss_pred             EEEEeCCCCee-eecc--cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          132 IKIWDAEKKKC-TGAL--MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       132 i~iwd~~~~~~-~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      +.+|+...... ...+  .......+.+++.+++ +++++.+.++.+..+|...+........                 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~-----------------  152 (302)
T d2p4oa1          91 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEH-----------------  152 (302)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEEC-----------------
T ss_pred             EEEEEecccccceeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecC-----------------
Confidence            88887654321 1111  1234568899999987 8888888888888888765431110000                 


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                      .................+.+  ++..++.+....+.|..++..........         ...........++++++|++
T Consensus       153 ~~~~~~~~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~pdgia~d~dG~l  221 (302)
T d2p4oa1         153 PMLARSNSESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEP---------EIFVEQTNIDDFAFDVEGNL  221 (302)
T ss_dssp             GGGSCSSTTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEBCTTSCBCCC---------EEEEESCCCSSEEEBTTCCE
T ss_pred             CccceeeccCcccccccccc--cCCceeeecCCCCeEEecccccccccccc---------ccccCCCCCcceEECCCCCE
Confidence            00000011111223455555  45567766778899998888765433211         11222344678999999998


Q ss_pred             EEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE---CCCCCEEEEecCC
Q 010390          289 LTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI---CPNASHILSGSSD  341 (512)
Q Consensus       289 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~~g~~d  341 (512)
                      +++...++.|..++...   ...............+.++|   ++|++.|+.++..
T Consensus       222 ~va~~~~~~V~~i~p~G---~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         222 YGATHIYNSVVRIAPDR---STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEECBTTCCEEEECTTC---CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEEEcCCCcEEEECCCC---CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            88888889999997532   11111221111223567899   6677877665543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.2e-09  Score=93.65  Aligned_cols=239  Identities=13%  Similarity=0.117  Sum_probs=142.4

Q ss_pred             cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC---cEEEEeCCCCeeeecccCcCCC
Q 010390           76 YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ---TIKIWDAEKKKCTGALMGHTGS  152 (512)
Q Consensus        76 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~h~~~  152 (512)
                      .|.|.|.+...              ...+..+...+.+.+|||||+.||......   .+.+.+...+... .+..+.+.
T Consensus        20 ~l~i~d~dG~~--------------~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   84 (269)
T d2hqsa1          20 ELRVSDYDGYN--------------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRH   84 (269)
T ss_dssp             EEEEEETTSCS--------------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSC
T ss_pred             EEEEEcCCCCC--------------cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecc
Confidence            47777776543              333345567789999999999999654432   4666676666544 34446778


Q ss_pred             EEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecC
Q 010390          153 IKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE  232 (512)
Q Consensus       153 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  232 (512)
                      .....|+|++..++.....++...++.........                          ..............+++++
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~  138 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--------------------------RQVTDGRSNNTEPTWFPDS  138 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--------------------------EECCCCSSCEEEEEECTTS
T ss_pred             cccceecCCCCeeeEeeecCCccceeecccccccc--------------------------eeeeecccccccccccccc
Confidence            88999999994444444444444444332221110                          0111223344555677777


Q ss_pred             CEEEEEeecCCe--EEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC-eEEEEEcccCCCC
Q 010390          233 VSIATASAVNSI--VKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH-RIYLYNVLQLDKG  309 (512)
Q Consensus       233 ~~l~~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~  309 (512)
                      ..++.+...++.  |.+.++.......            ............|+|+++.++..+.++ ...+|..... ..
T Consensus       139 ~~~~~~~~~~g~~~i~~~~~~~~~~~~------------~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~-~~  205 (269)
T d2hqsa1         139 QNLAFTSDQAGRPQVYKVNINGGAPQR------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA-TG  205 (269)
T ss_dssp             SEEEEEECTTSSCEEEEEETTSSCCEE------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT-TC
T ss_pred             ccceecccccCCceEeeeeccccccee------------eecccccccccccccccceeEEEeecCCceeeeEeecc-cc
Confidence            777766656664  4444555443321            223334566788999999888776554 4444433222 22


Q ss_pred             ceEeeeeceeceeEEEEEECCCCCEEEEecC---CCCEEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390          310 PIQHFSGCRIESFYVKSEICPNASHILSGSS---DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP  373 (512)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~  373 (512)
                      ........   .......|||||++|+..+.   ...|+++++.....  ..+....+.+...+|+|
T Consensus       206 ~~~~~~~~---~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~--~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         206 GVQVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK--ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CEEECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE--EECCCSSSEEEEEEECC
T ss_pred             cceEeecC---ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEEeCCCCcEEeEEeCC
Confidence            22222221   22345789999999875443   34688999987654  35555677888999998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.27  E-value=7.3e-10  Score=101.21  Aligned_cols=273  Identities=11%  Similarity=0.054  Sum_probs=152.4

Q ss_pred             CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-eeeecc-cCcCCCEEEEEeeCCCCCeEEEEe--CCCcEEEEeCCC
Q 010390          107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK-KCTGAL-MGHTGSIKSLCSHPTNSDILVSGS--RDGSFAIWDLRC  182 (512)
Q Consensus       107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~  182 (512)
                      ....+..|+|+|++++|+++.. +.+..|.+... ...... .........+.+++++...+++..  ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3455667999999999988765 45777776532 222111 112233456678887733333332  235666555432


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~  262 (512)
                      ......      ...  .........  ............+.++.|+|++++++++......|.+|+.............
T Consensus       117 ~~~~~~------~~~--~~~~~~~~~--~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~  186 (365)
T d1jofa_         117 FAGYGN------VFS--VSETGKLEK--NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV  186 (365)
T ss_dssp             SCCEEE------EEE--ECTTCCEEE--EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             CCCcce------eEe--eeecceecC--cccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccce
Confidence            211000      000  000000000  0000111223357899999999999987765678888876543322111000


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeece---------------eceeEEEE
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCR---------------IESFYVKS  326 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~---------------~~~~~~~~  326 (512)
                            ...........++|+|+++++++.. .+++|.+|++...............               .......+
T Consensus       187 ------~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  260 (365)
T d1jofa_         187 ------DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             ------ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             ------eecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccce
Confidence                  1122335688999999999887665 6789999998654433332222111               11234568


Q ss_pred             EECCCCCEEEEecC------CCCEEEEecCCCCCCCcee-----ccccCCeEEEEeCC-CCCCeEE-EEeCCCcEEEEeC
Q 010390          327 EICPNASHILSGSS------DGNAYVWQVNKPQADPIKL-----KSHDGEVTAVNWCP-NEAGKIV-TSSDDYTVRLWSL  393 (512)
Q Consensus       327 ~~s~~~~~l~~g~~------dg~i~iw~~~~~~~~~~~~-----~~h~~~v~~v~~~~-~~~~~l~-s~~~dg~i~vwd~  393 (512)
                      .++|+|++|+++..      .+.|..|++..........     ........+++++| +| ++|+ +...++.|.+|++
T Consensus       261 ~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G-~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEEEE
T ss_pred             EECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC-CEEEEEeCCCCeEEEEEE
Confidence            89999999977632      2337777776543211111     11234567799998 67 6554 4467899999998


Q ss_pred             CCCc
Q 010390          394 ENSR  397 (512)
Q Consensus       394 ~~~~  397 (512)
                      +...
T Consensus       340 ~~~~  343 (365)
T d1jofa_         340 KDEF  343 (365)
T ss_dssp             ETTE
T ss_pred             eCCc
Confidence            6554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.19  E-value=5.4e-09  Score=92.73  Aligned_cols=241  Identities=11%  Similarity=0.033  Sum_probs=149.3

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390          110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN  189 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  189 (512)
                      .+..+++.|||+++++...+++|..|+....  ...+......+.+++|.+++ +++++...++.+..|+..........
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEecccccceee
Confidence            5788999999999999988999988886543  23344456789999999998 78888888888888886543221100


Q ss_pred             cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390          190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA  269 (512)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  269 (512)
                                              ............+.+.+++..+++ ...++.+..+|............+..... .
T Consensus       106 ------------------------~~~~~~~~~~n~i~~~~~g~~~v~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~  159 (302)
T d2p4oa1         106 ------------------------LLTLPDAIFLNGITPLSDTQYLTA-DSYRGAIWLIDVVQPSGSIWLEHPMLARS-N  159 (302)
T ss_dssp             ------------------------EEECTTCSCEEEEEESSSSEEEEE-ETTTTEEEEEETTTTEEEEEEECGGGSCS-S
T ss_pred             ------------------------ccccCCccccceeEEccCCCEEee-ccccccceeeeccCCcceeEecCCcccee-e
Confidence                                    001122345788999999877665 44678888888776543322211111000 1


Q ss_pred             ccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceE-eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390          270 KETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQ-HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ  348 (512)
Q Consensus       270 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~  348 (512)
                      ..........+.++. +.++++.+..+.|..++.......... ....   ......++++++|+++++...++.|..++
T Consensus       160 ~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         160 SESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             TTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             ccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccC---CCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence            112222345566653 345556667889999987653222111 1111   11233489999999888888889999997


Q ss_pred             cCCCCCCCceeccccCCeEEEEe---CCCCCCeEEEEeC
Q 010390          349 VNKPQADPIKLKSHDGEVTAVNW---CPNEAGKIVTSSD  384 (512)
Q Consensus       349 ~~~~~~~~~~~~~h~~~v~~v~~---~~~~~~~l~s~~~  384 (512)
                      ..............-...++++|   .+|+ +.|..++.
T Consensus       236 p~G~~~~~~~~~~~~~~pt~vafg~~~~D~-~~Lyvtt~  273 (302)
T d2p4oa1         236 PDRSTTIIAQAEQGVIGSTAVAFGQTEGDC-TAIYVVTN  273 (302)
T ss_dssp             TTCCEEEEECGGGTCTTEEEEEECCSTTTT-TEEEEEEC
T ss_pred             CCCCEEEEEecCCCCCCceEEEEcCCCCCC-CEEEEECC
Confidence            76432211222223346899999   5676 55554443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.15  E-value=1.7e-08  Score=87.19  Aligned_cols=237  Identities=7%  Similarity=-0.082  Sum_probs=146.5

Q ss_pred             CcEEEEEEecCCCEEEEE-eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390          109 NAIFDLCWIKEDTNILTA-SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK  187 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  187 (512)
                      ..-.+|++.++|...++. +..+.+..++............-......+++.+++ +++++....+.+++++-.+.....
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCC-CEEEeeeeeceeeeeeeccceeee
Confidence            445899999999976654 455777777765443322222222345678899987 777776666666665543322111


Q ss_pred             CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc
Q 010390          188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS  267 (512)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  267 (512)
                      .                            ........++++.++++.+++ ...+..+..++.........         
T Consensus        93 ~----------------------------~~~~~~p~~iavd~~g~i~v~-d~~~~~~~~~~~~~~~~~~~---------  134 (260)
T d1rwia_          93 P----------------------------FDGLNYPEGLAVDTQGAVYVA-DRGNNRVVKLAAGSKTQTVL---------  134 (260)
T ss_dssp             C----------------------------CCSCCSEEEEEECTTCCEEEE-EGGGTEEEEECTTCSSCEEC---------
T ss_pred             e----------------------------eeeeeecccccccccceeEee-ccccccccccccccceeeee---------
Confidence            0                            011235678999998876654 44566677777655433221         


Q ss_pred             ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390          268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW  347 (512)
Q Consensus       268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw  347 (512)
                        ..........++++++++++++...++.|..+|.....   ...+.... ......++++++|+++++....+.|..+
T Consensus       135 --~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~---~~~~~~~~-~~~p~gi~~d~~g~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         135 --PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN---QVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKL  208 (260)
T ss_dssp             --CCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC---EEECCCSS-CCSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred             --eecccCCcceeeecCCCCEeeeccccccccccccccce---eeeeeccc-cCCCccceeeeeeeeeeeecCCCEEEEE
Confidence              11112345789999999988888888999999865421   12221111 1234678999999988888888888888


Q ss_pred             ecCCCCCCCcee-ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390          348 QVNKPQADPIKL-KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL  393 (512)
Q Consensus       348 ~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~  393 (512)
                      +......  ... ...-....+|++++++ .++++-..+++|+..+.
T Consensus       209 ~~~~~~~--~~~~~~~~~~P~~i~~d~~g-~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         209 LAGSTTS--TVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CTTCSCC--EECCCCSCCCEEEEEECTTC-CEEEEEGGGTEEEEECC
T ss_pred             eCCCCeE--EEEccCCCCCeEEEEEeCCC-CEEEEECCCCEEEEEeC
Confidence            7655432  222 1223467899999998 78877677776665554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.13  E-value=1.8e-08  Score=87.05  Aligned_cols=238  Identities=8%  Similarity=0.003  Sum_probs=147.6

Q ss_pred             CCcceEEEEEecCCCcEEEEe-eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC
Q 010390           51 TPPLAVSFCKTSKNSHIFAVS-DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD  129 (512)
Q Consensus        51 ~~v~~v~~~~~s~~~~~latg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d  129 (512)
                      -.+.+|++   +++|++.++. +..+.|..++......            ......+ ......+++++++..+++....
T Consensus        14 ~~P~~vav---d~dG~i~v~~~~~~~~i~~~~~~~~~~------------~~~~~~~-~~~p~gvav~~~g~i~v~d~~~   77 (260)
T d1rwia_          14 LSPSGVAV---DSAGNVYVTSEGMYGRVVKLATGSTGT------------TVLPFNG-LYQPQGLAVDGAGTVYVTDFNN   77 (260)
T ss_dssp             CCEEEEEE---CTTCCEEEEECSSSCEEEEEC----CE------------EECCCCS-CCSCCCEEECTTCCEEEEETTT
T ss_pred             CCCCEEEE---cCCCCEEEEEcCCCCEEEEEcCCCceE------------EEeccCC-ccCceEEEEcCCCCEEEeeeee
Confidence            44679988   9999966654 5567777777654321            1111111 2345678899999888777777


Q ss_pred             CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390          130 QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ  209 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (512)
                      +.+++++-.+...+....+ .....++++.+++ +++++-..+..+..++.........                     
T Consensus        78 ~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~~~---------------------  134 (260)
T d1rwia_          78 RVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVL---------------------  134 (260)
T ss_dssp             EEEEECTTCSCCEECCCCS-CCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCEEC---------------------
T ss_pred             ceeeeeeeccceeeeeeee-eeecccccccccc-eeEeeccccccccccccccceeeee---------------------
Confidence            7777776555555444432 3467899999987 7777666666677776544321110                     


Q ss_pred             cccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEE
Q 010390          210 SKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL  289 (512)
Q Consensus       210 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  289 (512)
                            ..........+++.+++..+++ ...++.|..+|.........           ..........|+++++|+++
T Consensus       135 ------~~~~~~~p~~i~~~~~g~~~v~-~~~~~~i~~~d~~~~~~~~~-----------~~~~~~~p~gi~~d~~g~l~  196 (260)
T d1rwia_         135 ------PFTGLNDPDGVAVDNSGNVYVT-DTDNNRVVKLEAESNNQVVL-----------PFTDITAPWGIAVDEAGTVY  196 (260)
T ss_dssp             ------CCCSCCSCCEEEECTTCCEEEE-EGGGTEEEEECTTTCCEEEC-----------CCSSCCSEEEEEECTTCCEE
T ss_pred             ------eecccCCcceeeecCCCCEeee-ccccccccccccccceeeee-----------eccccCCCccceeeeeeeee
Confidence                  0011224567899998886554 45678899999876543321           11222446789999999988


Q ss_pred             EEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEec
Q 010390          290 TASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQV  349 (512)
Q Consensus       290 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~  349 (512)
                      ++....+.|..++.....   ...+... .-.....++++++|+++++-..+++|+.++.
T Consensus       197 vsd~~~~~i~~~~~~~~~---~~~~~~~-~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         197 VTEHNTNQVVKLLAGSTT---STVLPFT-GLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEETTTTEEEEECTTCSC---CEECCCC-SCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             eeecCCCEEEEEeCCCCe---EEEEccC-CCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            888788889888764321   1111111 1123567999999988887666776766554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.11  E-value=3.4e-08  Score=89.88  Aligned_cols=266  Identities=9%  Similarity=-0.022  Sum_probs=144.5

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE--EEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI--LTA  126 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l--~s~  126 (512)
                      ...++.-|++   +|++++|.++.. +.+..|.+.......          .... .........+.++++++.+  +++
T Consensus        38 ~~~~~s~la~---s~d~~~ly~~~~-~~~~~~~i~~~~~~~----------~~~~-~~~~~~p~~v~~~~~~~~~~v~~a  102 (365)
T d1jofa_          38 QDEPISWMTF---DHERKNIYGAAM-KKWSSFAVKSPTEIV----------HEAS-HPIGGHPRANDADTNTRAIFLLAA  102 (365)
T ss_dssp             TTCCCSEEEE---CTTSSEEEEEEB-TEEEEEEEEETTEEE----------EEEE-EECCSSGGGGCTTSCCEEEEEEEC
T ss_pred             CCCCCCEEEE---cCCCCEEEEEeC-CcEEEEEEeCCCCeE----------EEee-ecCCCCcEEEEECCCCCEEEEEEe
Confidence            4444555666   999999988764 568888775431100          0000 0111223445666666643  222


Q ss_pred             e-CCCcEEEEeCCC-------------Cee---eec-ccCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCC
Q 010390          127 S-GDQTIKIWDAEK-------------KKC---TGA-LMGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPK  187 (512)
Q Consensus       127 ~-~dg~i~iwd~~~-------------~~~---~~~-~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~  187 (512)
                      . ..+.|..+.+..             ++.   ... -......+.++.|+|++ +++++++ ....|.+|+........
T Consensus       103 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~~~  181 (365)
T d1jofa_         103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVE  181 (365)
T ss_dssp             SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             cCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCcee
Confidence            2 134444443211             100   000 11122357899999999 6555554 34578888765432111


Q ss_pred             CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc------C
Q 010390          188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA------W  261 (512)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~------~  261 (512)
                      ..                      ..............++|+|+++.++++...++.|.+|++..........      .
T Consensus       182 ~~----------------------~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~  239 (365)
T d1jofa_         182 LV----------------------GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             EE----------------------EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             ec----------------------cceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccc
Confidence            00                      0001112245788999999999999988889999999987654322110      0


Q ss_pred             CC--ccccccccccccCeeEEEeCCCCCEEEEEec------CCeEEEEEcccCCCCce-Eeeee-ceeceeEEEEEECC-
Q 010390          262 PH--AESSSAKETRLHGISSLSQDSNGVFLTASCM------DHRIYLYNVLQLDKGPI-QHFSG-CRIESFYVKSEICP-  330 (512)
Q Consensus       262 ~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~-~~~~~-~~~~~~~~~~~~s~-  330 (512)
                      +.  ................+.++|+|++|+++..      .+.|..|++........ ..+.. .........++++| 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~  319 (365)
T d1jofa_         240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred             cccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCC
Confidence            00  0000011222334567899999999988753      23477777654221111 11111 11112344588998 


Q ss_pred             CCCEEEEe-cCCCCEEEEecCCC
Q 010390          331 NASHILSG-SSDGNAYVWQVNKP  352 (512)
Q Consensus       331 ~~~~l~~g-~~dg~i~iw~~~~~  352 (512)
                      +|++|+++ ..++.|.+|+++..
T Consensus       320 ~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         320 SDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCEEEEEeCCCCeEEEEEEeCC
Confidence            78977555 56789999988654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.09  E-value=8.7e-08  Score=84.99  Aligned_cols=248  Identities=10%  Similarity=0.013  Sum_probs=149.4

Q ss_pred             CcEEEEEEecCCCEEEEEeC-------CCcEEEEeCCCCeeeecccC----cCCCEEEEEeeCCCCCeEEEEeCCCcEEE
Q 010390          109 NAIFDLCWIKEDTNILTASG-------DQTIKIWDAEKKKCTGALMG----HTGSIKSLCSHPTNSDILVSGSRDGSFAI  177 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~dg~i~v  177 (512)
                      .....++|.++|+++++...       +|+|..||..+++.......    ..+.-..+.|.+++ +.++++.....|..
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~i~~   96 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-NQLFVADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-SEEEEEETTTEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC-CEEEEEECCCeEEE
Confidence            34567899999997776432       46799999888765433221    12346789999988 66777776677888


Q ss_pred             EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee--------------cCC
Q 010390          178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA--------------VNS  243 (512)
Q Consensus       178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~--------------~dg  243 (512)
                      .+.............                ..       ..-...+.+++.++|...++-..              ..|
T Consensus        97 ~~~~g~~~~~~~~~~----------------~g-------~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G  153 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDS----------------EG-------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EETTSCEEECCSBCT----------------TS-------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EeCCCcEEEEEeccc----------------cc-------cccCCCcEEEECCCCCEEEecCccCcccccccceeccCCc
Confidence            887643211100000                00       00113577888898877765221              123


Q ss_pred             eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC----EEE-EEecCCeEEEEEcccCCCCc-eEeeeec
Q 010390          244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV----FLT-ASCMDHRIYLYNVLQLDKGP-IQHFSGC  317 (512)
Q Consensus       244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~l~-~~~~dg~i~i~d~~~~~~~~-~~~~~~~  317 (512)
                      .|..++.... ..            .........+.++|++++.    .|+ +-+..+.|..||+....... ...+...
T Consensus       154 ~v~~~~~dg~-~~------------~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~  220 (314)
T d1pjxa_         154 SIYCFTTDGQ-MI------------QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI  220 (314)
T ss_dssp             EEEEECTTSC-EE------------EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred             eEEEEeecCc-ee------------EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEc
Confidence            3444443221 11            1111223346788888764    444 44677899999975421111 0111110


Q ss_pred             e--eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390          318 R--IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE  394 (512)
Q Consensus       318 ~--~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~  394 (512)
                      .  .....-.+++..+|++.++....+.|.+||.+.+.. ...+......+++++|.|++..++++.+.+|.|...++.
T Consensus       221 ~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~-~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             cccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEE-EEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            0  111234689999999888877788999999876654 344555556789999999884477888888888887764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.09  E-value=1.4e-07  Score=83.60  Aligned_cols=266  Identities=9%  Similarity=0.041  Sum_probs=145.7

Q ss_pred             cceEEEEEecCCCcEEEEeeC-------CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDE-------DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT  125 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  125 (512)
                      +.+++|   .++|++.++...       +|.|..||..++......         ........+.-..+.|.+++..|++
T Consensus        20 ~EGpa~---d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~---------~~~~~~~~g~P~Gl~~~~dg~~l~v   87 (314)
T d1pjxa_          20 AEGPVF---DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC---------KPEVNGYGGIPAGCQCDRDANQLFV   87 (314)
T ss_dssp             CEEEEE---CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE---------CCEETTEECCEEEEEECSSSSEEEE
T ss_pred             CeEeEE---eCCCCEEEEECccccccccCCEEEEEECCCCcEEEEE---------CCccccCCCcceeEEEeCCCCEEEE
Confidence            456677   999997776432       467888888765321100         0000111234678999999998888


Q ss_pred             EeCCCcEEEEeCCCCeeeecccCcC----CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          126 ASGDQTIKIWDAEKKKCTGALMGHT----GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       126 ~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      +...+.|...+.+............    ...+.+++.+++ ++.++-.. +....|+.......    ....+..    
T Consensus        88 ad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~-~~~~~~~~~~~~~~----~~G~v~~----  157 (314)
T d1pjxa_          88 ADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPA-GEVAPADYTRSMQE----KFGSIYC----  157 (314)
T ss_dssp             EETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECB-CBCTTSCCCBTTSS----SCEEEEE----
T ss_pred             EECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC-CEEEecCc-cCcccccccceecc----CCceEEE----
Confidence            8877779999977654322211111    135778888887 66665322 11111111000000    0000000    


Q ss_pred             cccccccccccceecccccccEEEEEEeecCC----EEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEV----SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI  277 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i  277 (512)
                          ..... ........-...+.++|++++.    .++++.+..+.|..||+..............    .........
T Consensus       158 ----~~~dg-~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~----~~~~~~~~p  228 (314)
T d1pjxa_         158 ----FTTDG-QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH----IPGTHEGGA  228 (314)
T ss_dssp             ----ECTTS-CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE----CCCCSSCEE
T ss_pred             ----EeecC-ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEE----ccccccccc
Confidence                00000 0001111222456789998765    5666666788999998764432211000000    001111235


Q ss_pred             eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecCCCCEEEEecCCCC
Q 010390          278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSSDGNAYVWQVNKPQ  353 (512)
Q Consensus       278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~  353 (512)
                      ..|+++.+|++.++....+.|.+||......  ...+...  .....+++|.++++.| ++.+.+|.|..+++....
T Consensus       229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~--~~~i~~p--~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQP--KMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEEEBTTCCEEEEEETTTEEEEECTTCBSC--SEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             eeeEEecCCcEEEEEcCCCEEEEEeCCCCEE--EEEEECC--CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            6799999999888877889999999754332  2222211  1235679999998744 666777888888876543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=6.5e-08  Score=83.98  Aligned_cols=220  Identities=7%  Similarity=0.017  Sum_probs=130.9

Q ss_pred             ccCCcceEEEEEecCCCcEEEEeeCCC---cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390           49 EETPPLAVSFCKTSKNSHIFAVSDEDG---YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT  125 (512)
Q Consensus        49 h~~~v~~v~~~~~s~~~~~latg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s  125 (512)
                      +...+.+-+|   ||||+.||......   .+.+.+..+..              ...+..+.+......|+|+|+.++.
T Consensus        37 ~~~~~~sP~w---SPDGk~IAf~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~spdg~~i~~   99 (269)
T d2hqsa1          37 SPQPLMSPAW---SPDGSKLAYVTFESGRSALVIQTLANGA--------------VRQVASFPRHNGAPAFSPDGSKLAF   99 (269)
T ss_dssp             ESSCEEEEEE---CTTSSEEEEEECTTSSCEEEEEETTTCC--------------EEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             CCCceeeeEE---CCCCCEEEEEEeeccCcceeeeecccCc--------------eeEEeeeecccccceecCCCCeeeE
Confidence            4556667777   99999999764333   35555655442              3445567788999999999999986


Q ss_pred             EeC-CCc--EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE--eCCCCCCCCCccccceeeeccc
Q 010390          126 ASG-DQT--IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW--DLRCKSSPKSNCAESFVFSSAV  200 (512)
Q Consensus       126 ~~~-dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~  200 (512)
                      ... ++.  +..+........... ..........+++++...+++...+|...+|  ++......              
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~--------------  164 (269)
T d2hqsa1         100 ALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ--------------  164 (269)
T ss_dssp             EECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE--------------
T ss_pred             eeecCCccceeecccccccceeee-eccccccccccccccccceecccccCCceEeeeecccccce--------------
Confidence            554 333  333333333333322 3444455566777775566666666655554  44433211              


Q ss_pred             ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390          201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL  280 (512)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  280 (512)
                                    .............|+|++..++.....++...+|..........           ...........
T Consensus       165 --------------~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~p  219 (269)
T d2hqsa1         165 --------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-----------VLSSTFLDETP  219 (269)
T ss_dssp             --------------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-----------ECCCSSSCEEE
T ss_pred             --------------eeecccccccccccccccceeEEEeecCCceeeeEeecccccce-----------EeecCccccce
Confidence                          12233446677889999999998776666666665543322221           22223446678


Q ss_pred             EeCCCCCEEEEEecC---CeEEEEEcccCCCCceEeeeeceeceeEEEEEECC
Q 010390          281 SQDSNGVFLTASCMD---HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP  330 (512)
Q Consensus       281 ~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~  330 (512)
                      .|+|||+.|+..+..   ..|.++++....   ...+...  ...+...+|||
T Consensus       220 ~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~---~~~lt~~--~g~~~~p~WSP  267 (269)
T d2hqsa1         220 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KARLPAT--DGQVKFPAWSP  267 (269)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTSCC---EEECCCS--SSEEEEEEECC
T ss_pred             EECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEEeCC--CCcEEeEEeCC
Confidence            899999988765533   468888875432   2222222  12344567887

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.05  E-value=2.7e-07  Score=80.38  Aligned_cols=242  Identities=12%  Similarity=0.101  Sum_probs=152.2

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccC------cCCCEEEEEeeCCCCCeEEEE-eCCCcEEEEeCCC
Q 010390          110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMG------HTGSIKSLCSHPTNSDILVSG-SRDGSFAIWDLRC  182 (512)
Q Consensus       110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l~s~-~~dg~i~vwd~~~  182 (512)
                      .-..|++.++++.+++-..++.|++||.+ ++.+..+..      .......+++..+....+++. +.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            46899999999988887778899999964 665554421      122345566665543444433 3445666666532


Q ss_pred             CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390          183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP  262 (512)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~  262 (512)
                      .. ...                          ...........++..+++..+++. ...+.+.+++.... .....   
T Consensus       103 ~~-~~~--------------------------~~~~~~~~p~~~avd~~G~i~v~~-~~~~~~~~~~~~g~-~~~~~---  150 (279)
T d1q7fa_         103 QF-VRK--------------------------FGATILQHPRGVTVDNKGRIIVVE-CKVMRVIIFDQNGN-VLHKF---  150 (279)
T ss_dssp             CE-EEE--------------------------ECTTTCSCEEEEEECTTSCEEEEE-TTTTEEEEECTTSC-EEEEE---
T ss_pred             cc-eee--------------------------cCCCcccccceeccccCCcEEEEe-eccceeeEeccCCc-eeecc---
Confidence            11 000                          001123356788888888766653 35677888876532 22211   


Q ss_pred             CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC-C
Q 010390          263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-D  341 (512)
Q Consensus       263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-d  341 (512)
                            ....+......+++++++..+++....+.|++||...   ..+..+...........++++++|+++++-.. +
T Consensus       151 ------g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G---~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~  221 (279)
T d1q7fa_         151 ------GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG---QYLRQIGGEGITNYPIGVGINSNGEILIADNHNN  221 (279)
T ss_dssp             ------ECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC---CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred             ------cccccccccceeeeccceeEEeeeccccceeeeecCC---ceeeeecccccccCCcccccccCCeEEEEECCCC
Confidence                  1123345577899999999888888889999999643   33333322222334567899999998877543 4


Q ss_pred             CCEEEEecCCCCCCCceec--cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          342 GNAYVWQVNKPQADPIKLK--SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       342 g~i~iw~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +.|.+|+.. ++. ...+.  ........|++.+++ .++ .++.+..|++|......
T Consensus       222 ~~v~~f~~~-G~~-~~~~~~~~~~~~p~~vav~~dG-~l~-V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         222 FNLTIFTQD-GQL-ISALESKVKHAQCFDVALMDDG-SVV-LASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CEEEEECTT-SCE-EEEEEESSCCSCEEEEEEETTT-EEE-EEETTTEEEEEECSCCC
T ss_pred             cEEEEECCC-CCE-EEEEeCCCCCCCEeEEEEeCCC-cEE-EEeCCCeEEEEEeeeec
Confidence            569999854 332 22332  223468899999998 554 45678999999987653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.01  E-value=7.7e-07  Score=77.42  Aligned_cols=247  Identities=12%  Similarity=0.109  Sum_probs=150.4

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC-CEEEE-EeCC
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED-TNILT-ASGD  129 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s-~~~d  129 (512)
                      .+..|++   +++|+++++-..+..|++||.+.... ...       .....-.+....-..+++..+. ..+++ .+.+
T Consensus        24 ~P~gvav---d~dg~i~VaD~~n~rI~v~d~~G~~~-~~~-------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~   92 (279)
T d1q7fa_          24 EPSGVAV---NAQNDIIVADTNNHRIQIFDKEGRFK-FQF-------GECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT   92 (279)
T ss_dssp             CEEEEEE---CTTCCEEEEEGGGTEEEEECTTSCEE-EEE-------CCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred             CccEEEE---cCCCCEEEEECCCCEEEEEeCCCCEE-EEe-------cccCCCcccccccccccccccccccceeccCCc
Confidence            4678888   99999888877888999999764311 000       0000001122344556666544 34443 3345


Q ss_pred             CcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390          130 QTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS  208 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (512)
                      +.|.+++. .++....+. ........+++.+++ .++++....+.+.+++..... ....                   
T Consensus        93 ~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g~~-~~~~-------------------  150 (279)
T d1q7fa_          93 HQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGNV-LHKF-------------------  150 (279)
T ss_dssp             CEEEEECT-TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE-EEEE-------------------
T ss_pred             cccccccc-cccceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccCCce-eecc-------------------
Confidence            67888875 455555443 334567888998877 777777767778887754211 0000                   


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                            ....+......+++.+++..+++ ....+.|++||.... ......         ..+.......|+++++|++
T Consensus       151 ------g~~~~~~~~~~i~~d~~g~i~v~-d~~~~~V~~~d~~G~-~~~~~g---------~~g~~~~P~giavD~~G~i  213 (279)
T d1q7fa_         151 ------GCSKHLEFPNGVVVNDKQEIFIS-DNRAHCVKVFNYEGQ-YLRQIG---------GEGITNYPIGVGINSNGEI  213 (279)
T ss_dssp             ------ECTTTCSSEEEEEECSSSEEEEE-EGGGTEEEEEETTCC-EEEEES---------CTTTSCSEEEEEECTTCCE
T ss_pred             ------cccccccccceeeeccceeEEee-eccccceeeeecCCc-eeeeec---------ccccccCCcccccccCCeE
Confidence                  01133456778888888865554 557889999997643 222211         1122344678999999997


Q ss_pred             EEEEec-CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390          289 LTASCM-DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP  352 (512)
Q Consensus       289 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~  352 (512)
                      +++-.. ++.|.+|+..   ...+..+...........+++.++|.++++ +.++.|++|.....
T Consensus       214 ~Vad~~~~~~v~~f~~~---G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         214 LIADNHNNFNLTIFTQD---GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEECSSSCEEEEECTT---SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEECCCCcEEEEECCC---CCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence            766543 4579999842   233344433222234567899999986655 46889999998764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.6e-07  Score=88.08  Aligned_cols=276  Identities=11%  Similarity=0.062  Sum_probs=143.9

Q ss_pred             CcceEEEEEecCCCcEEEEee---------CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390           52 PPLAVSFCKTSKNSHIFAVSD---------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN  122 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~  122 (512)
                      .+....+   ||||++++...         ..+.+.|+|+.++..           ..+.........+....|||||+.
T Consensus        62 ~~~~~~~---SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~-----------~~l~~~~~~~~~l~~~~wSPDG~~  127 (465)
T d1xfda1          62 RAIRYEI---SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-----------QSLDPPEVSNAKLQYAGWGPKGQQ  127 (465)
T ss_dssp             TCSEEEE---CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-----------EECCCTTCCSCCCSBCCBCSSTTC
T ss_pred             ccceeEE---CCCCCeEEEEEcccceeEeeccccEEEEEccCCce-----------eeccCccCCccccceeeeccCCce
Confidence            4556666   99999887763         357889999987653           123223334455667889999999


Q ss_pred             EEEEeCCCcEEEEeCCCCeeeeccc-CcCCC-----------------EEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCC
Q 010390          123 ILTASGDQTIKIWDAEKKKCTGALM-GHTGS-----------------IKSLCSHPTNSDILVSGS-RDGSFAIWDLRCK  183 (512)
Q Consensus       123 l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~-----------------v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~  183 (512)
                      ||-.. ++.|.+.+..++..++... +..+.                 -.++-|+|++ ..||... .+..|..+.+...
T Consensus       128 iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDg-k~iaf~~~D~s~V~~~~~~~~  205 (465)
T d1xfda1         128 LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTY  205 (465)
T ss_dssp             EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCC
T ss_pred             EEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCC-CeEEEEEecccccceeecccc
Confidence            99765 6678998887776544332 11111                 2467799999 6666554 4455555554321


Q ss_pred             CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390          184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH  263 (512)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~  263 (512)
                      ...                                ....+..+.+-..|...     ....+.++|+.++........+.
T Consensus       206 ~~~--------------------------------~~p~~~~~~Yp~~G~~n-----p~~~l~v~d~~~~~~~~~~~~~~  248 (465)
T d1xfda1         206 TGS--------------------------------IYPTVKPYHYPKAGSEN-----PSISLHVIGLNGPTHDLEMMPPD  248 (465)
T ss_dssp             SSS--------------------------------SSCCCEEEECCBTTSCC-----CEEEEEEEESSSSCCCEECCCCC
T ss_pred             ccc--------------------------------ccceeeeeeccccCCCC-----CceeEEEEecCCCcEEEEEeccC
Confidence            100                                00112222222222110     11247777877654433221111


Q ss_pred             ccccccccccccCeeEEEeCCCCCEEEEEec-C---CeEEEEEcccCCCCceEeeeece-eceeEEEEEECCCCCEEE--
Q 010390          264 AESSSAKETRLHGISSLSQDSNGVFLTASCM-D---HRIYLYNVLQLDKGPIQHFSGCR-IESFYVKSEICPNASHIL--  336 (512)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~--  336 (512)
                           .......-+..+.|++++++++.... +   ..|.++|..++....+....... .........|+++|+.++  
T Consensus       249 -----~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi  323 (465)
T d1xfda1         249 -----DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (465)
T ss_dssp             -----CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             -----cCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEE
Confidence                 12222334778999999986665432 2   25777887654433222211110 000112357889988542  


Q ss_pred             -EecCCC--CEEEEecCC-----CCCCCceeccccCCeEEE-EeCCCCCCeEEEEeCC
Q 010390          337 -SGSSDG--NAYVWQVNK-----PQADPIKLKSHDGEVTAV-NWCPNEAGKIVTSSDD  385 (512)
Q Consensus       337 -~g~~dg--~i~iw~~~~-----~~~~~~~~~~h~~~v~~v-~~~~~~~~~l~s~~~d  385 (512)
                       ....+|  .++...+..     .......+....-.|..+ .|..++..+.+++..+
T Consensus       324 ~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~  381 (465)
T d1xfda1         324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED  381 (465)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS
T ss_pred             EeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCC
Confidence             222232  244443321     111122333334456665 5888774444555543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.87  E-value=2.6e-06  Score=75.49  Aligned_cols=233  Identities=11%  Similarity=0.035  Sum_probs=140.7

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCC
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKS  184 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~  184 (512)
                      ..+..++|.++|++.++-...+.|..|+..+++....+.........+++.+++ +++++...+    +.+...+.....
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCce
Confidence            345689999999977777788999999988876665555556678999999988 766665432    234444443322


Q ss_pred             CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee-----cCCeEEEEeccCccceecc
Q 010390          185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA-----VNSIVKFWDTRNLKAQITQ  259 (512)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~-----~dg~i~iwd~~~~~~~~~~  259 (512)
                      .....                         ...........+++.++|...++...     ..+.+..++.......   
T Consensus       119 ~~~~~-------------------------~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~---  170 (319)
T d2dg1a1         119 LQDII-------------------------EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT---  170 (319)
T ss_dssp             CEEEE-------------------------CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE---
T ss_pred             eeeec-------------------------cCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE---
Confidence            11100                         00011234678889999986654211     0123444444332211   


Q ss_pred             cCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCCceEeeee-----ceeceeEEEEEECCCCC
Q 010390          260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQHFSG-----CRIESFYVKSEICPNAS  333 (512)
Q Consensus       260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~  333 (512)
                               .........+.++|+++++.|+.+ +..+.|..|++...... ......     .......-.+++..+|+
T Consensus       171 ---------~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~-~~~~~~~~~~~~~~~~~PdGl~vD~~G~  240 (319)
T d2dg1a1         171 ---------PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-IQPFGATIPYYFTGHEGPDSCCIDSDDN  240 (319)
T ss_dssp             ---------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-EEEEEEEEEEECCSSSEEEEEEEBTTCC
T ss_pred             ---------EEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCce-eccccceeeeccCCccceeeeeEcCCCC
Confidence                     111222345779999999876555 56789999998543221 111111     11111234689999999


Q ss_pred             EEEEecCCCCEEEEecCCCCCCCcee------ccccCCeEEEEeCCCCCCeEEEEe
Q 010390          334 HILSGSSDGNAYVWQVNKPQADPIKL------KSHDGEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       334 ~l~~g~~dg~i~iw~~~~~~~~~~~~------~~h~~~v~~v~~~~~~~~~l~s~~  383 (512)
                      +.++....+.|.+|+-. ++.. ..+      .++...+++++|.++. ..+++..
T Consensus       241 l~Va~~~~g~V~~~~p~-G~~l-~~i~~P~~~~~~~~~~~~~~~~~~~-~~~~~t~  293 (319)
T d2dg1a1         241 LYVAMYGQGRVLVFNKR-GYPI-GQILIPGRDEGHMLRSTHPQFIPGT-NQLIICS  293 (319)
T ss_dssp             EEEEEETTTEEEEECTT-SCEE-EEEECTTGGGTCSCBCCEEEECTTS-CEEEEEE
T ss_pred             EEEEEcCCCEEEEECCC-CcEE-EEEeCCCcCCCcCceeeeEEEeCCC-CEEEEEc
Confidence            88888888999999964 4431 222      1344568899999987 4554443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.85  E-value=2.3e-06  Score=75.86  Aligned_cols=237  Identities=12%  Similarity=0.066  Sum_probs=141.2

Q ss_pred             CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC---
Q 010390           52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---  128 (512)
Q Consensus        52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---  128 (512)
                      ....++|   .++|++.++-...+.|..|+.++...             ...+.........+++.++|+++++...   
T Consensus        41 ~lEG~~~---D~~G~Ly~~D~~~g~I~ri~p~g~~~-------------~~~~~~~~~~p~gla~~~dG~l~va~~~~~~  104 (319)
T d2dg1a1          41 QLEGLNF---DRQGQLFLLDVFEGNIFKINPETKEI-------------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFK  104 (319)
T ss_dssp             CEEEEEE---CTTSCEEEEETTTCEEEEECTTTCCE-------------EEEEECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             CcEeCEE---CCCCCEEEEECCCCEEEEEECCCCeE-------------EEEEeCCCCCeeEEEECCCCCEEEEecCCCc
Confidence            3457777   99999888877889999998766432             2223344567889999999988876543   


Q ss_pred             -CCcEEEEeCCCCeeeecccC--cCCCEEEEEeeCCCCCeEEEEeCC------CcEEEEeCCCCCCCCCccccceeeecc
Q 010390          129 -DQTIKIWDAEKKKCTGALMG--HTGSIKSLCSHPTNSDILVSGSRD------GSFAIWDLRCKSSPKSNCAESFVFSSA  199 (512)
Q Consensus       129 -dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~  199 (512)
                       .+.+...+...+........  -....+.+++.+++ ++.++....      +.+..++.....               
T Consensus       105 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~~---------------  168 (319)
T d2dg1a1         105 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRT---------------  168 (319)
T ss_dssp             SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCC---------------
T ss_pred             cceeEEEEcCCCceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccce---------------
Confidence             23455556555543332221  12357788999988 665553221      123333322111               


Q ss_pred             cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390          200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS  279 (512)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  279 (512)
                                   .......-...+.++|+++++.++++-+..+.|..||+..............   ............
T Consensus       169 -------------~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~---~~~~~~~~~PdG  232 (319)
T d2dg1a1         169 -------------VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI---PYYFTGHEGPDS  232 (319)
T ss_dssp             -------------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE---EEECCSSSEEEE
T ss_pred             -------------eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecccccee---eeccCCccceee
Confidence                         1111112234678999999998888777889999999864322111000000   001111123567


Q ss_pred             EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee--c--eeceeEEEEEECCCCCEEEEec
Q 010390          280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG--C--RIESFYVKSEICPNASHILSGS  339 (512)
Q Consensus       280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~--~~~~~~~~~~~s~~~~~l~~g~  339 (512)
                      |+++.+|++.++....+.|.+||-.   ...+..+.-  .  ......++++|.+++..+++..
T Consensus       233 l~vD~~G~l~Va~~~~g~V~~~~p~---G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         233 CCIDSDDNLYVAMYGQGRVLVFNKR---GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTT---SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             eeEcCCCCEEEEEcCCCEEEEECCC---CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            9999999988888889999999953   233333321  1  1122456789988877665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=9.2e-07  Score=82.81  Aligned_cols=272  Identities=6%  Similarity=-0.038  Sum_probs=144.0

Q ss_pred             cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe---------CCCcE
Q 010390           62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS---------GDQTI  132 (512)
Q Consensus        62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~---------~dg~i  132 (512)
                      .+++.++.. ..+|.|.+||+.++....          .+.......-.+....||||+++|+...         ..+.+
T Consensus        25 ~~~~~~~~~-~~~g~i~~~~~~~~~~~~----------l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~   93 (465)
T d1xfda1          25 ISDTEFIYR-EQKGTVRLWNVETNTSTV----------LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (465)
T ss_dssp             SSSSCBCCC-CSSSCEEEBCGGGCCCEE----------EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             eCCCcEEEE-eCCCcEEEEECCCCCEEE----------EEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccE
Confidence            677776543 557889999998764311          1111111233567788999999988764         35678


Q ss_pred             EEEeCCCCeeeec--ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc--eeeeccccccccccc
Q 010390          133 KIWDAEKKKCTGA--LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES--FVFSSAVVKGAHLLS  208 (512)
Q Consensus       133 ~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  208 (512)
                      .++|+.++.....  .......+....|+|+| +.+|-.. ++.|.+.+...+..........  .+..      +.   
T Consensus        94 ~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG-~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~n------G~---  162 (465)
T d1xfda1          94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYN------GL---  162 (465)
T ss_dssp             EEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEE------EE---
T ss_pred             EEEEccCCceeeccCccCCccccceeeeccCC-ceEEEEe-cceEEEEecCCCceEEEecccCcceeec------cc---
Confidence            9999998865432  22334456667899999 5565554 5678888876654322111000  0000      00   


Q ss_pred             ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390          209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF  288 (512)
Q Consensus       209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  288 (512)
                       ...+ ........-..+-|+|||+.|+..-.++..|..+.+.......                ...+..+.+-.-|..
T Consensus       163 -~d~v-yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~----------------~p~~~~~~Yp~~G~~  224 (465)
T d1xfda1         163 -SDWL-YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI----------------YPTVKPYHYPKAGSE  224 (465)
T ss_dssp             -CCHH-HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS----------------SCCCEEEECCBTTSC
T ss_pred             -cchh-hhhhhccccceEEECCCCCeEEEEEecccccceeecccccccc----------------cceeeeeeccccCCC
Confidence             0000 0000011225678999999999877667766666553211000                001122222111110


Q ss_pred             EEEEecCCeEEEEEcccCCCCceEee--eeceeceeEEEEEECCCCCEEEEecC----CCCEEEEecCCCCCCCceeccc
Q 010390          289 LTASCMDHRIYLYNVLQLDKGPIQHF--SGCRIESFYVKSEICPNASHILSGSS----DGNAYVWQVNKPQADPIKLKSH  362 (512)
Q Consensus       289 l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~iw~~~~~~~~~~~~~~h  362 (512)
                      -    ....+.++|+...........  .......++..+.|++++++++....    ...|.++|..+++.........
T Consensus       225 n----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~  300 (465)
T d1xfda1         225 N----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES  300 (465)
T ss_dssp             C----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred             C----CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC
Confidence            0    112577778754322211110  01112345677899999987765432    2358888888876532222222


Q ss_pred             cCCe----EEEEeCCCCCC
Q 010390          363 DGEV----TAVNWCPNEAG  377 (512)
Q Consensus       363 ~~~v----~~v~~~~~~~~  377 (512)
                      .+.|    ....|+++|..
T Consensus       301 ~~wv~~~~~~p~~~~dg~~  319 (465)
T d1xfda1         301 EAWLHRQNEEPVFSKDGRK  319 (465)
T ss_dssp             SSCCCCCCCCCEECTTSCS
T ss_pred             CceEeccCCceeEccCCCe
Confidence            2222    34578899843

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.47  E-value=0.00014  Score=63.16  Aligned_cols=230  Identities=8%  Similarity=-0.057  Sum_probs=138.6

Q ss_pred             EEEEecCCCEEE-EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390          113 DLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA  191 (512)
Q Consensus       113 ~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  191 (512)
                      +..|.+....|. +--..+.|.-||..+++.. .+. ....+.++++.+++ .++++ +.+ .|.++|..+++.......
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg-~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCC-CEEEE-EeC-ccEEeecccceeeEEeee
Confidence            456887554444 4446788999999888653 232 34578899998876 55554 444 588899887653211000


Q ss_pred             cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec---CCeEEEEeccCccceecccCCCccccc
Q 010390          192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV---NSIVKFWDTRNLKAQITQAWPHAESSS  268 (512)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~  268 (512)
                                             ........++.+.+.++|...+.....   .+.-.+|.+..++...           
T Consensus        97 -----------------------~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~-----------  142 (295)
T d2ghsa1          97 -----------------------ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK-----------  142 (295)
T ss_dssp             -----------------------STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE-----------
T ss_pred             -----------------------ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE-----------
Confidence                                   000112357888899999877764322   1234555555443321           


Q ss_pred             cccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCC----ceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390          269 AKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKG----PIQHFSGCRIESFYVKSEICPNASHILSGSSDGN  343 (512)
Q Consensus       269 ~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~  343 (512)
                       ........+.++|+++++.++.+ +..+.|..|++......    ..............-.+++..+|++.++.-..+.
T Consensus       143 -~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~  221 (295)
T d2ghsa1         143 -LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA  221 (295)
T ss_dssp             -EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE
T ss_pred             -EeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc
Confidence             12223346789999999866555 46788999987432111    1111222222334566899999998887767788


Q ss_pred             EEEEecCCCCCCCceeccccCCeEEEEeC-CCCCCeEEEEeC
Q 010390          344 AYVWQVNKPQADPIKLKSHDGEVTAVNWC-PNEAGKIVTSSD  384 (512)
Q Consensus       344 i~iw~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~l~s~~~  384 (512)
                      |..||-. ++. ...+.--...+++++|- ++...+++|...
T Consensus       222 V~~~dp~-G~~-~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         222 VDRYDTD-GNH-IARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEECTT-CCE-EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             eEEecCC-CcE-eeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            9999964 443 23443334569999995 565456666554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.43  E-value=1.6e-05  Score=68.63  Aligned_cols=92  Identities=8%  Similarity=0.025  Sum_probs=63.9

Q ss_pred             cCC--CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-C-----CcEE
Q 010390           62 SKN--SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-D-----QTIK  133 (512)
Q Consensus        62 s~~--~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-d-----g~i~  133 (512)
                      |||  |+.+|..+ +|.|.+.|+.++.              .+.+..+.+.+...+|||||+.||.... +     ..|.
T Consensus         7 sPdi~G~~v~f~~-~~dl~~~d~~~g~--------------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~   71 (281)
T d1k32a2           7 NPDIHGDRIIFVC-CDDLWEHDLKSGS--------------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLY   71 (281)
T ss_dssp             EEEEETTEEEEEE-TTEEEEEETTTCC--------------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEE
T ss_pred             CCCCCCCEEEEEe-CCcEEEEECCCCC--------------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEE
Confidence            788  99888765 5678888998764              3445667788999999999999985432 2     2477


Q ss_pred             EEeCCCCeeeecccC------cCCCEEEEEeeCCCCCeEEEE
Q 010390          134 IWDAEKKKCTGALMG------HTGSIKSLCSHPTNSDILVSG  169 (512)
Q Consensus       134 iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l~s~  169 (512)
                      +++..+++.......      .........|+|++ +.|+..
T Consensus        72 ~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg-~~l~~~  112 (281)
T d1k32a2          72 FYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDG-NLIIST  112 (281)
T ss_dssp             EEETTTTEEEECCCCCEEEETTEECSEEEEECTTC-CEEEEE
T ss_pred             EEEecCCceEEeeecCCCccCccccccccccCCCC-CEEEEE
Confidence            888888766543221      12345677899988 555543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.42  E-value=0.00012  Score=63.54  Aligned_cols=221  Identities=12%  Similarity=0.014  Sum_probs=132.8

Q ss_pred             cC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 010390           62 SK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK  140 (512)
Q Consensus        62 s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~  140 (512)
                      .+ ++.+..+--..+.|.-||.+++..              .. ......+.++++.+++.++++ +.+| |.++|..++
T Consensus        26 d~~~~~l~wvDi~~~~I~r~d~~~g~~--------------~~-~~~~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg   88 (295)
T d2ghsa1          26 DPASGTAWWFNILERELHELHLASGRK--------------TV-HALPFMGSALAKISDSKQLIA-SDDG-LFLRDTATG   88 (295)
T ss_dssp             ETTTTEEEEEEGGGTEEEEEETTTTEE--------------EE-EECSSCEEEEEEEETTEEEEE-ETTE-EEEEETTTC
T ss_pred             ECCCCEEEEEECCCCEEEEEECCCCeE--------------EE-EECCCCcEEEEEecCCCEEEE-EeCc-cEEeecccc
Confidence            44 566666666778899999876532              11 123457889999988876665 4554 889999988


Q ss_pred             eeeeccc--C--cCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCCCCCCccccceeeeccccccccccccccc
Q 010390          141 KCTGALM--G--HTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKR  212 (512)
Q Consensus       141 ~~~~~~~--~--h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (512)
                      +......  .  ....++.+.+.|+| ++.++...+    +.-.+|.+..++.                           
T Consensus        89 ~~~~l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~~---------------------------  140 (295)
T d2ghsa1          89 VLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKV---------------------------  140 (295)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEE---------------------------
T ss_pred             eeeEEeeeecCCCcccceeeEECCCC-CEEEEeccccccccceeEeeecCCcE---------------------------
Confidence            6543221  1  12357888899988 655554321    2334444432211                           


Q ss_pred             ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE
Q 010390          213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS  292 (512)
Q Consensus       213 ~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  292 (512)
                       ......-...+.++|+++++.++.+.+..+.|..|++...........   ...............++++.+|++.++.
T Consensus       141 -~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~---~~~~~~~~~~g~pdG~~vD~~GnlWva~  216 (295)
T d2ghsa1         141 -TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA---EVFIDSTGIKGGMDGSVCDAEGHIWNAR  216 (295)
T ss_dssp             -EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC---EEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             -EEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccce---EEEeccCcccccccceEEcCCCCEEeee
Confidence             011122234678999999999888887889999998764322111000   0000112233457889999999988777


Q ss_pred             ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC-CCCCEEE
Q 010390          293 CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-PNASHIL  336 (512)
Q Consensus       293 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~  336 (512)
                      -..+.|..||..   ...+..+.-.  ...+++++|- ++.+.|+
T Consensus       217 ~~~g~V~~~dp~---G~~~~~i~lP--~~~~T~~~FGG~d~~~Ly  256 (295)
T d2ghsa1         217 WGEGAVDRYDTD---GNHIARYEVP--GKQTTCPAFIGPDASRLL  256 (295)
T ss_dssp             ETTTEEEEECTT---CCEEEEEECS--CSBEEEEEEESTTSCEEE
T ss_pred             eCCCceEEecCC---CcEeeEecCC--CCceEEEEEeCCCCCEEE
Confidence            778899999953   2233333221  1236778885 6665554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=0.00034  Score=59.24  Aligned_cols=255  Identities=8%  Similarity=-0.012  Sum_probs=142.8

Q ss_pred             cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE-eCCCcEEEEeCCCCeeee
Q 010390           66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA-SGDQTIKIWDAEKKKCTG  144 (512)
Q Consensus        66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~  144 (512)
                      .+|..+. .+.|+-.+++......        ......+..+...+.+++|.+..+.|.-. ..++.|+..++.......
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~--------~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~   72 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKK--------TEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT   72 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCG--------GGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE
T ss_pred             CEEEEeC-CCeEEEEECCCccccc--------cccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE
Confidence            4455444 3467777775442210        11122233445568889999877777654 456788888887665544


Q ss_pred             cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390          145 ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT  224 (512)
Q Consensus       145 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  224 (512)
                      .+......+.++++...+.++.++-...+.|.+.++.......                           ........+.
T Consensus        73 v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~---------------------------l~~~~l~~p~  125 (263)
T d1npea_          73 IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV---------------------------LFDTGLVNPR  125 (263)
T ss_dssp             EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---------------------------EECSSCSSEE
T ss_pred             EEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE---------------------------EecccccCCc
Confidence            4443345788999987664555666667899999987543211                           0011123578


Q ss_pred             EEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEE
Q 010390          225 SVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLY  301 (512)
Q Consensus       225 ~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~  301 (512)
                      .++.+|....++.+-...+  .|.--++........           ..........+++++.++.|+.+. ..+.|...
T Consensus       126 ~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i-----------~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~  194 (263)
T d1npea_         126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL-----------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (263)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE-----------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEecccCcEEEeecCCCCcEEEEecCCCCCceee-----------eeecccccceEEEeecCcEEEEEeCCCCEEEEE
Confidence            8999998888776542222  344445543322211           111223467899998877776654 56889999


Q ss_pred             EcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390          302 NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP  373 (512)
Q Consensus       302 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~  373 (512)
                      |+.......+  +.+..   ....+++. ++.+..+-...+.|...|..+++..............+++..+
T Consensus       195 ~~~g~~~~~v--~~~~~---~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         195 NPAQPGRRKV--LEGLQ---YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             ETTEEEEEEE--EECCC---SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             ECCCCCeEEE--ECCCC---CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            9865332222  22211   12345554 3334445445677888888766543222222233444555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.00  E-value=0.00099  Score=60.08  Aligned_cols=111  Identities=10%  Similarity=0.098  Sum_probs=68.9

Q ss_pred             cCCCcEEEEeeCCC-----------cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC-
Q 010390           62 SKNSHIFAVSDEDG-----------YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD-  129 (512)
Q Consensus        62 s~~~~~latg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d-  129 (512)
                      ..+|++++.|+.+.           .+.+||..++.-...          ......|.......++.+++..++.|+.+ 
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~----------~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~   97 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR----------TVTVTKHDMFCPGISMDGNGQIVVTGGNDA   97 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC----------EEEECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec----------CCCCCCcccceeEEEEecCCcEEEeecCCC
Confidence            67899988887532           277899887643110          01112232333456788899999988765 


Q ss_pred             CcEEEEeCCCCeeeec--ccCcCCCEEEEEeeCCCCCeEEEEeCC------CcEEEEeCCCCC
Q 010390          130 QTIKIWDAEKKKCTGA--LMGHTGSIKSLCSHPTNSDILVSGSRD------GSFAIWDLRCKS  184 (512)
Q Consensus       130 g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~~  184 (512)
                      ..+.+||..+..-...  +... ..-.+.+..+++ .+++.|+.+      ..+.+||..+.+
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSC-CSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cceeEecCccCccccccccccc-ccccceeeecCC-ceeeeccccccccccceeeeecCCCCc
Confidence            5899999887754322  2211 122345666776 777777653      358889987653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.92  E-value=0.00051  Score=60.67  Aligned_cols=234  Identities=13%  Similarity=0.112  Sum_probs=127.7

Q ss_pred             eEEEEEecCCCcEEEEee-CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe--cCCCEEEEEeCCC-
Q 010390           55 AVSFCKTSKNSHIFAVSD-EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI--KEDTNILTASGDQ-  130 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--~~~~~l~s~~~dg-  130 (512)
                      .+++--=.+||++|.+.. .+++|.+.|+++.+..           ++... .....+..+...  |+..|++.++.+. 
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~-----------kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~v  156 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCD-----------AILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDET  156 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEE-----------EEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeee-----------EEEec-CCCCCCceeecccCCCeEEEEccCcccc
Confidence            666633234899888764 6788999999876431           12222 233455666654  4566777766532 


Q ss_pred             -----------------cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC--c-------------EEEE
Q 010390          131 -----------------TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG--S-------------FAIW  178 (512)
Q Consensus       131 -----------------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~-------------i~vw  178 (512)
                                       .+.++|.++.+....+.. .+....+.+++++ .++++.+.+.  .             +.++
T Consensus       157 P~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~  234 (459)
T d1fwxa2         157 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVF  234 (459)
T ss_dssp             ESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEE
T ss_pred             ccCCCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEe
Confidence                             356788888877666542 2356678899998 6666655431  1             2222


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT  258 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~  258 (512)
                      ++...+..........+......... . ...........-......+..+|||++++++|..+.++.++|+++......
T Consensus       235 n~~rie~av~~Gk~~eingV~VVD~~-~-~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~  312 (459)
T d1fwxa2         235 NIAEIEKAIAAGDYQELNGVKVVDGR-K-EASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY  312 (459)
T ss_dssp             EHHHHHHHHHHTCSEEETTEEEEECS-G-G--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH
T ss_pred             chHHhHHhhhcCCcEEeCCceeeccc-c-cCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhc
Confidence            22100000000000000000000000 0 000111112222344667899999999999999999999999986544321


Q ss_pred             ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc
Q 010390          259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL  304 (512)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~  304 (512)
                      .................+...-+|+..|....+---|..|.-|++.
T Consensus       313 ~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         313 ENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             SCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             ccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            1110000000111223345667888888766666789999999984

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=0.011  Score=49.54  Aligned_cols=235  Identities=11%  Similarity=-0.044  Sum_probs=138.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCeee-----ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390          122 NILTASGDQTIKIWDAEKKKCT-----GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF  196 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~  196 (512)
                      +|+-+. .+.|+-.+++.....     ..+..+...+.+|+|.+.+..++.+-..++.|+..+++.......        
T Consensus         3 fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v--------   73 (263)
T d1npea_           3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI--------   73 (263)
T ss_dssp             EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE--------
T ss_pred             EEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEE--------
Confidence            444333 245666666543221     123334445778999987745555555667888888865432111        


Q ss_pred             ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390          197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG  276 (512)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (512)
                                         .......+.++++..-+..+..+....+.|.+.+++.......           .......
T Consensus        74 -------------------~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l-----------~~~~l~~  123 (263)
T d1npea_          74 -------------------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL-----------FDTGLVN  123 (263)
T ss_dssp             -------------------ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-----------ECSSCSS
T ss_pred             -------------------EEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE-----------ecccccC
Confidence                               1111235788999887778877776788999999886543221           1112245


Q ss_pred             eeEEEeCCCCCEEEEEecC---CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCC
Q 010390          277 ISSLSQDSNGVFLTASCMD---HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQVNKP  352 (512)
Q Consensus       277 i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~  352 (512)
                      +..++++|...+|+.....   ..|..-++....   ...+.... -.....+++++.++.|... ...+.|...+++..
T Consensus       124 p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~---~~~i~~~~-~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~  199 (263)
T d1npea_         124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---RRILAQDN-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP  199 (263)
T ss_dssp             EEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---CEEEECTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred             CcEEEEecccCcEEEeecCCCCcEEEEecCCCCC---ceeeeeec-ccccceEEEeecCcEEEEEeCCCCEEEEEECCCC
Confidence            7889999877776655432   234444553321   12222111 1234678898887777444 55678998988765


Q ss_pred             CCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          353 QADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       353 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      ... ....+-. ...+|++. .+ .+..+-...+.|...|..+++......
T Consensus       200 ~~~-~v~~~~~-~P~~lav~-~~-~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         200 GRR-KVLEGLQ-YPFAVTSY-GK-NLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EEE-EEEECCC-SEEEEEEE-TT-EEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CeE-EEECCCC-CcEEEEEE-CC-EEEEEECCCCEEEEEECCCCccceEEC
Confidence            432 2333322 34678775 33 466666677889999999888666543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=0.019  Score=47.83  Aligned_cols=267  Identities=11%  Similarity=0.095  Sum_probs=155.2

Q ss_pred             cEEEEe---eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390           66 HIFAVS---DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC  142 (512)
Q Consensus        66 ~~latg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~  142 (512)
                      +++.+-   +....|.|.|+.+...            ..+.-..-+    +.-.+|..+.|+.-+ ..++.|+|+++.+.
T Consensus        33 kyicVRe~~~~~~~VvIidl~n~~~------------~~Rrpi~Ad----sAIMhP~~~IiALra-g~~LQiFnletK~k   95 (327)
T d1utca2          33 KFICIREKVGEQAQVVIIDMNDPSN------------PIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSK   95 (327)
T ss_dssp             SEEEEEEEETTEEEEEEEETTSTTS------------CEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEE
T ss_pred             CEEEEEeccCCCceEEEEECCCCCc------------ceecccchh----hhhcCCCCcEEEEec-CCeEEEEehhHhhh
Confidence            455542   3345799999876532            122111112    234568888777554 56899999999998


Q ss_pred             eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390          143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS  222 (512)
Q Consensus       143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (512)
                      +..+.-. .+|.--.|-.+  +.|+-.+. ..|.-|+++.......      .+.              +...+  ....
T Consensus        96 lks~~~~-e~VvfWkWis~--~~L~lVT~-taVYHW~~~g~s~P~k------~fd--------------R~~~L--~~~Q  149 (327)
T d1utca2          96 MKAHTMT-DDVTFWKWISL--NTVALVTD-NAVYHWSMEGESQPVK------MFD--------------RHSSL--AGCQ  149 (327)
T ss_dssp             EEEEECS-SCCCEEEESSS--SEEEEECS-SEEEEEESSSSCCCEE------EEE--------------CCGGG--TTCE
T ss_pred             hceEEcC-CCcEEEEecCC--CEEEEEcC-CceEEEcccCCCCchh------hhh--------------hcccc--cCce
Confidence            8887744 45655567653  56666654 5899999965332111      000              00011  1345


Q ss_pred             EEEEEEeecCCEEEEEee------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC---CEEEEEe
Q 010390          223 ITSVLYLKDEVSIATASA------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG---VFLTASC  293 (512)
Q Consensus       223 v~~~~~~~~~~~l~~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~  293 (512)
                      |-.-..+++.++++..|-      -.|.+.+|..+.....            ..++|......+.+..+.   ..++.+.
T Consensus       150 IInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ------------~ieGhaa~F~~~~~~g~~~~~~lf~fa~  217 (327)
T d1utca2         150 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ------------PIEGHAASFAQFKMEGNAEESTLFCFAV  217 (327)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE------------EECCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc------------cccceeeeeEEEEcCCCCCCceEEEEEE
Confidence            666666777777776552      2367888888765443            345555444444443221   2333322


Q ss_pred             ---cCCeEEEEEcccCCC-Cc---eEe----eeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390          294 ---MDHRIYLYNVLQLDK-GP---IQH----FSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH  362 (512)
Q Consensus       294 ---~dg~i~i~d~~~~~~-~~---~~~----~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h  362 (512)
                         ..+.+++.++..... .+   .+.    +.......+...+..|+....+..-+.-|.|++||+.++.+. ..-+-.
T Consensus       218 r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i-~~nRIs  296 (327)
T d1utca2         218 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI-YMNRIS  296 (327)
T ss_dssp             EETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE-EEEECC
T ss_pred             CCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE-EEeecC
Confidence               236899999865321 11   111    122234567788999999999999999999999999998763 333333


Q ss_pred             cCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390          363 DGEVTAVNWCPNEAGKIVTSSDDYTVR  389 (512)
Q Consensus       363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~  389 (512)
                      .+.|...+-..+. .=++....+|.|.
T Consensus       297 ~~~iF~~a~~~~~-~Gi~~VNr~GqVl  322 (327)
T d1utca2         297 GETIFVTAPHEAT-AGIIGVNRKGQVL  322 (327)
T ss_dssp             SSCEEEEEEETTT-TEEEEEETTSEEE
T ss_pred             CCceEEeccCCCC-ceEEEECCCCeEE
Confidence            4555544444443 3444555666554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.022  Score=47.75  Aligned_cols=231  Identities=8%  Similarity=-0.032  Sum_probs=129.8

Q ss_pred             EEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCe----e
Q 010390           68 FAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS-GDQTIKIWDAEKKK----C  142 (512)
Q Consensus        68 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~----~  142 (512)
                      |..+.. ..|+-.++++...              ..+......+.+++|.+..+.|.-.. .++.|.--++....    .
T Consensus         4 Ll~s~~-~~I~~~~l~~~~~--------------~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~   68 (266)
T d1ijqa1           4 LFFTNR-HEVRKMTLDRSEY--------------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY   68 (266)
T ss_dssp             EEEECB-SSEEEEETTSCCC--------------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred             EEEECC-CeEEEEECCCCcc--------------eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcce
Confidence            444432 3588888876432              22223455778999999877777544 46667766664321    1


Q ss_pred             eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390          143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS  222 (512)
Q Consensus       143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (512)
                      ...+......+.++++.+.+.++.++-...+.|.+.++.......                           ........
T Consensus        69 ~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~---------------------------~~~~~~~~  121 (266)
T d1ijqa1          69 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---------------------------LFRENGSK  121 (266)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE---------------------------EEECTTCC
T ss_pred             EEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEE---------------------------EEcCCCCC
Confidence            112222234566788877665666666677889999987543111                           11122345


Q ss_pred             EEEEEEeecCCEEEEEe-ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEE
Q 010390          223 ITSVLYLKDEVSIATAS-AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYL  300 (512)
Q Consensus       223 v~~~~~~~~~~~l~~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i  300 (512)
                      ...++.+|....++.+. +..+.|.-.++........           ..........+++++.+..|+.+ ...+.|..
T Consensus       122 P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l-----------~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~  190 (266)
T d1ijqa1         122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL-----------VTENIQWPNGITLDLLSGRLYWVDSKLHSISS  190 (266)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE-----------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cceEEEEcccCeEEEeccCCCcceeEeccCCCceecc-----------cccccceeeEEEeeccccEEEEecCCcCEEEE
Confidence            78899998777766543 2344566666654432211           11122446789999877766665 45688999


Q ss_pred             EEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390          301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~  354 (512)
                      .++.......+  ............+++. .+.+..+-..++.|...+..++..
T Consensus       191 ~~~dG~~~~~~--~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         191 IDVNGGNRKTI--LEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             EETTSCSCEEE--EECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             EECCCCCEEEE--EeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcc
Confidence            99854332222  2222111223445554 234444444567777777666554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.29  E-value=0.0026  Score=54.02  Aligned_cols=101  Identities=15%  Similarity=0.121  Sum_probs=62.8

Q ss_pred             eeCC--CCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEE
Q 010390          158 SHPT--NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSI  235 (512)
Q Consensus       158 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  235 (512)
                      .+|+  | +.++-.+ +|.|.+.|+.+++..                            .+..+........|+|||+.|
T Consensus         6 ~sPdi~G-~~v~f~~-~~dl~~~d~~~g~~~----------------------------~Lt~~~~~~~~p~~SPDG~~i   55 (281)
T d1k32a2           6 LNPDIHG-DRIIFVC-CDDLWEHDLKSGSTR----------------------------KIVSNLGVINNARFFPDGRKI   55 (281)
T ss_dssp             EEEEEET-TEEEEEE-TTEEEEEETTTCCEE----------------------------EEECSSSEEEEEEECTTSSEE
T ss_pred             cCCCCCC-CEEEEEe-CCcEEEEECCCCCEE----------------------------EEecCCCcccCEEECCCCCEE
Confidence            5677  7 5555444 457888898865422                            223345567889999999999


Q ss_pred             EEEeecCC-----eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe
Q 010390          236 ATASAVNS-----IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC  293 (512)
Q Consensus       236 ~~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  293 (512)
                      +.+...++     .|.+++..+++.......+.     .............|+|+|+.|+...
T Consensus        56 af~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~-----~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          56 AIRVMRGSSLNTADLYFYNGENGEIKRITYFSG-----KSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEEEEESTTCCEEEEEEEETTTTEEEECCCCCE-----EEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEEEeeCCCCCceEEEEEEecCCceEEeeecCC-----CccCccccccccccCCCCCEEEEEE
Confidence            98764333     47777777665443211110     1112223466788999999888764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.25  E-value=0.0034  Score=55.34  Aligned_cols=156  Identities=13%  Similarity=0.089  Sum_probs=89.8

Q ss_pred             EEEEe---ecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC--CCCCEEEEEecC----
Q 010390          225 SVLYL---KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD--SNGVFLTASCMD----  295 (512)
Q Consensus       225 ~~~~~---~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d----  295 (512)
                      .+.+.   +||+++++....+..|.+.|+++.+.......|.          ...+..+...  |+..+++..+.+    
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn----------~~~~HG~r~~~~p~T~YV~~~~e~~vP~  158 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN----------AKGIHGLRPQKWPRSNYVFCNGEDETPL  158 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS----------CCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCC----------CCCCceeecccCCCeEEEEccCcccccc
Confidence            45554   4899999988889999999999888754332222          1234445543  455566666543    


Q ss_pred             --------------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC---------------CEEE
Q 010390          296 --------------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG---------------NAYV  346 (512)
Q Consensus       296 --------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---------------~i~i  346 (512)
                                    +.+.++|..+.+........+     ....+.++++|+++++.+.+.               .+.+
T Consensus       159 pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g-----~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V  233 (459)
T d1fwxa2         159 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVV  233 (459)
T ss_dssp             SCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS-----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEE
T ss_pred             CCCCccccchhhcceEEEEEecCCceEEEEeeeCC-----ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEE
Confidence                          235566765432221111111     233478999999998765321               1333


Q ss_pred             Eec-----------------------CCCCC-CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390          347 WQV-----------------------NKPQA-DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN  395 (512)
Q Consensus       347 w~~-----------------------~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~  395 (512)
                      ++.                       .+... ....+..-......+..+|||...++++..+.++.|.|++.
T Consensus       234 ~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         234 FNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             echHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            332                       22100 01111111123456899999955556666899999999863

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.041  Score=45.98  Aligned_cols=236  Identities=9%  Similarity=-0.049  Sum_probs=137.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390          122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV  201 (512)
Q Consensus       122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  201 (512)
                      +|+.+.. ..|+-.++.+.+....+. ....+.+++|.+..+.++.+-..++.|.-.++.........            
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~------------   68 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY------------   68 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C------------
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcce------------
Confidence            3444433 348888987765444333 44567899999877445555445666766666432211100            


Q ss_pred             cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390          202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS  281 (512)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  281 (512)
                                 ..........+..+++...+..+..+....+.|.+.++........           ..........++
T Consensus        69 -----------~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~-----------~~~~~~~P~~l~  126 (266)
T d1ijqa1          69 -----------DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-----------FRENGSKPRAIV  126 (266)
T ss_dssp             -----------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-----------EECTTCCEEEEE
T ss_pred             -----------EEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEE-----------EcCCCCCcceEE
Confidence                       0011122235678888888888887776778999999886553321           222234578899


Q ss_pred             eCCCCCEEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCCCCCCce
Q 010390          282 QDSNGVFLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQVNKPQADPIK  358 (512)
Q Consensus       282 ~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~  358 (512)
                      ++|...+|+...  ..+.|...++...   ....+..... .....+++++.++.|..+ ...+.|...++...... ..
T Consensus       127 vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~~l~~~~~-~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~-~~  201 (266)
T d1ijqa1         127 VDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TI  201 (266)
T ss_dssp             EETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECSSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE
T ss_pred             EEcccCeEEEeccCCCcceeEeccCCC---ceeccccccc-ceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE-EE
Confidence            998665555543  3356766666432   2222222211 234568888877766544 55678998898765432 22


Q ss_pred             ecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390          359 LKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS  400 (512)
Q Consensus       359 ~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  400 (512)
                      ...  ......++++.. + .++.+-..++.|...+..+++...
T Consensus       202 ~~~~~~~~~p~~lav~~-~-~ly~td~~~~~I~~~~~~~g~~~~  243 (266)
T d1ijqa1         202 LEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGSDVN  243 (266)
T ss_dssp             EECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCCCCE
T ss_pred             EeCCCcccccEEEEEEC-C-EEEEEECCCCeEEEEECCCCcceE
Confidence            222  223466788763 3 566666677888888887776443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.22  E-value=0.071  Score=48.21  Aligned_cols=263  Identities=8%  Similarity=0.012  Sum_probs=125.7

Q ss_pred             cCCCcEEEEEEecCCCEEEEE-eCC----CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC---------
Q 010390          106 AHQNAIFDLCWIKEDTNILTA-SGD----QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR---------  171 (512)
Q Consensus       106 ~h~~~V~~l~~s~~~~~l~s~-~~d----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---------  171 (512)
                      ++.-.+...+++|++++++.+ +.+    ..|++.|+.+++.+...... .....++|.+++..++.+.-.         
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEeccccCccccc
Confidence            333345567889999998832 223    46999999999865422111 112457899988434444321         


Q ss_pred             ------CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee--cCC
Q 010390          172 ------DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA--VNS  243 (512)
Q Consensus       172 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~--~dg  243 (512)
                            ...|..|.+.+......                       .+.........+..+..+.++++++....  .+.
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~-----------------------~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~  257 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDI-----------------------LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP  257 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCE-----------------------EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred             ccccCCcceEEEEECCCCccccc-----------------------cccccccCCceEEeeeccCCcceeeEEeeccCCc
Confidence                  12455565554321110                       00011111234566777889988875432  233


Q ss_pred             e--EEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe---cCCeEEEEEcccCCCCceEeeeece
Q 010390          244 I--VKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC---MDHRIYLYNVLQLDKGPIQHFSGCR  318 (512)
Q Consensus       244 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~  318 (512)
                      .  +.+.|+...............   ..........-+ .+.++.+++...   .++.|...++..........+-...
T Consensus       258 ~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~  333 (430)
T d1qfma1         258 VNRLWYCDLQQESNGITGILKWVK---LIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH  333 (430)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEE---EECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCC
T ss_pred             cEEEEEeeCCCcccccccccceeE---eecccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEeccc
Confidence            3  444454433221110000000   001111112222 222233333332   2367777777654333222222211


Q ss_pred             eceeEEEEEECCCCCEEEEe-cCCC--CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe---CCCcEEEEe
Q 010390          319 IESFYVKSEICPNASHILSG-SSDG--NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLWS  392 (512)
Q Consensus       319 ~~~~~~~~~~s~~~~~l~~g-~~dg--~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~---~dg~i~vwd  392 (512)
                      ... +..-.+...+.+|+.. ..++  .|+++++.++... .......+.|..+...++...+.++.+   .=.++.-+|
T Consensus       334 ~~~-~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~-~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~D  411 (430)
T d1qfma1         334 EKD-VLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL-KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (430)
T ss_dssp             SSC-EEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE-EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             Ccc-eeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEE-EecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEE
Confidence            111 1112233334455544 3444  4888998876542 233333456666666666533444433   236889999


Q ss_pred             CCCCcc
Q 010390          393 LENSRC  398 (512)
Q Consensus       393 ~~~~~~  398 (512)
                      +.+++.
T Consensus       412 l~t~~~  417 (430)
T d1qfma1         412 LTKEEL  417 (430)
T ss_dssp             TTSSSC
T ss_pred             CCCCCc
Confidence            998864

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.22  E-value=0.032  Score=49.68  Aligned_cols=163  Identities=10%  Similarity=0.022  Sum_probs=86.3

Q ss_pred             EecCCCEEEEEeCCC-----------cEEEEeCCCCeeeec--c-cCcCCCEEEEEeeCCCCCeEEEEeCC-CcEEEEeC
Q 010390          116 WIKEDTNILTASGDQ-----------TIKIWDAEKKKCTGA--L-MGHTGSIKSLCSHPTNSDILVSGSRD-GSFAIWDL  180 (512)
Q Consensus       116 ~s~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~--~-~~h~~~v~~l~~~~~~~~~l~s~~~d-g~i~vwd~  180 (512)
                      ...+|+.++.|+.+.           .+.+||..+++-...  . ..+.....+.++.+++ .+++.|+.+ ..+.+||.
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEEEEEG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-cEEEeecCCCcceeEecC
Confidence            345788888887531           377999988754322  1 2233333455677877 788887665 58999998


Q ss_pred             CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-----CeEEEEeccCccc
Q 010390          181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-----SIVKFWDTRNLKA  255 (512)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-----g~i~iwd~~~~~~  255 (512)
                      .+..-....                         .. .....-..++..++++.++..|..+     ..+.+||..+.+-
T Consensus       106 ~~~~w~~~~-------------------------~~-~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         106 SSDSWIPGP-------------------------DM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             GGTEEEECC-------------------------CC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ccCcccccc-------------------------cc-cccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            754321100                         00 0011123456667888877755322     3589999887653


Q ss_pred             eecccCCCccccc---cccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390          256 QITQAWPHAESSS---AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       256 ~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~  305 (512)
                      .............   ........-..+..-++++.+..+...+.+.++|...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~  212 (387)
T d1k3ia3         160 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS  212 (387)
T ss_dssp             EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred             eecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence            3211111000000   0000001111223345677777777777777777644

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.047  Score=45.38  Aligned_cols=224  Identities=14%  Similarity=0.200  Sum_probs=131.7

Q ss_pred             CCcEEEEeCCCCeee-ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390          129 DQTIKIWDAEKKKCT-GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL  207 (512)
Q Consensus       129 dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (512)
                      ...|.|.|+.++..+ +.-..    --+.-.+|.. +.|+.-+ ..++.++|+++.+.++...                 
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~-~IiALra-g~~LQiFnletK~klks~~-----------------  100 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHT-----------------  100 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC----CSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEE-----------------
T ss_pred             CceEEEEECCCCCcceecccc----hhhhhcCCCC-cEEEEec-CCeEEEEehhHhhhhceEE-----------------
Confidence            457889999876532 22111    1233467865 6666655 5689999999776544321                 


Q ss_pred             cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390          208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV  287 (512)
Q Consensus       208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  287 (512)
                                 ....|.--.|..+...-++   .+..|+-|+++....+......+.    .+  ....|..-..+++++
T Consensus       101 -----------~~e~VvfWkWis~~~L~lV---T~taVYHW~~~g~s~P~k~fdR~~----~L--~~~QIInY~~d~~~k  160 (327)
T d1utca2         101 -----------MTDDVTFWKWISLNTVALV---TDNAVYHWSMEGESQPVKMFDRHS----SL--AGCQIINYRTDAKQK  160 (327)
T ss_dssp             -----------CSSCCCEEEESSSSEEEEE---CSSEEEEEESSSSCCCEEEEECCG----GG--TTCEEEEEEECTTSC
T ss_pred             -----------cCCCcEEEEecCCCEEEEE---cCCceEEEcccCCCCchhhhhhcc----cc--cCceEEEEEECCCCC
Confidence                       1235555566655544444   267899999965443333222221    11  245688888899999


Q ss_pred             EEEEEe---c----CCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC--CCC-CEEEE---ecCCCCEEEEecCCCCC
Q 010390          288 FLTASC---M----DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC--PNA-SHILS---GSSDGNAYVWQVNKPQA  354 (512)
Q Consensus       288 ~l~~~~---~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~-~~l~~---g~~dg~i~iw~~~~~~~  354 (512)
                      +++..+   .    .|.+.+|....   ...+.+++|...  ...+.+.  ++. ..++.   +...+.++|.++.....
T Consensus       161 W~~l~GI~~~~~~i~G~mQLYS~er---~~sQ~ieGhaa~--F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~  235 (327)
T d1utca2         161 WLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGHAAS--FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT  235 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEETTT---TEEEEECCSEEE--EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCT
T ss_pred             EEEEEeEecCCCceeEEEEEEEecc---CcCccccceeee--eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCcc
Confidence            887654   2    36788888743   344455555311  1111111  111 12222   22346799999876321


Q ss_pred             --CC---c---ee---ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390          355 --DP---I---KL---KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM  401 (512)
Q Consensus       355 --~~---~---~~---~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  401 (512)
                        ..   .   .+   ..-.+-..++..++.. ..+..-+.-|.|+++|++++.++..
T Consensus       236 g~~~f~kk~vdi~fppea~~DFPvamqvs~ky-giiyviTK~G~i~lyDleTgt~i~~  292 (327)
T d1utca2         236 GNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYM  292 (327)
T ss_dssp             TCCCCCCEEEECCCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCCCcceeEEEECCccccCCcEEEEEeeccC-CEEEEEecCcEEEEEEcccccEEEE
Confidence              11   0   11   1123456678888877 7899999999999999999998875

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.89  E-value=0.11  Score=44.94  Aligned_cols=62  Identities=8%  Similarity=-0.027  Sum_probs=41.1

Q ss_pred             ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEE
Q 010390          221 MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTA  291 (512)
Q Consensus       221 ~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~  291 (512)
                      ...+.|+++|+++.++++.+..+.|+.|++.........         ....-....-.+.++++ |.+.+.
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~---------~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPL---------RVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE---------EEEECSSEEEEEEECTTTCCEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceE---------EEecCCCCCCccEEecCCCEEEEE
Confidence            468899999999999998888999999998754432211         11112234566777764 444433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.82  E-value=0.072  Score=50.10  Aligned_cols=53  Identities=8%  Similarity=-0.072  Sum_probs=33.3

Q ss_pred             CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe
Q 010390          331 NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~  383 (512)
                      .+.++++|+.||.++.+|.++++.....-.+....-.-+.|..+|.++++...
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence            46678889999999999999998743322222211122445557756765544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.44  E-value=0.12  Score=48.35  Aligned_cols=53  Identities=8%  Similarity=0.036  Sum_probs=32.4

Q ss_pred             CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe
Q 010390          331 NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS  383 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~  383 (512)
                      .+.++++|+.||.++.+|.++++.+...-.+....-.-+.+..+|.++|+..+
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            46788889999999999999998743222211111111344457755665543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.41  E-value=0.22  Score=46.61  Aligned_cols=67  Identities=13%  Similarity=0.143  Sum_probs=40.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCc---C-CCEEEEEeeCCCCCeEEEEe------CCCcEEEEeCCCCCCCCC
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGH---T-GSIKSLCSHPTNSDILVSGS------RDGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h---~-~~v~~l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~  188 (512)
                      +..|+.++.||.+.-.|.++|+........   . ..++.--... + ..++.+.      .+|.|+-+|+++++.+-.
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  191 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-C-CeEEEeeccccccccCcEEEEECCCCcEEEE
Confidence            346777888999999999999876554211   1 1111110111 2 3444444      367899999999886543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.21  E-value=0.21  Score=46.66  Aligned_cols=68  Identities=13%  Similarity=0.129  Sum_probs=39.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeeeecccCcCC-CEEEEEeeC--CCCCeEEEEeC------CCcEEEEeCCCCCCCCC
Q 010390          120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTG-SIKSLCSHP--TNSDILVSGSR------DGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~--~~~~~l~s~~~------dg~i~vwd~~~~~~~~~  188 (512)
                      +..++.+..|+.|.-.|..+|+.+........ .-..+.-.|  .+ ..++.+..      .|.|.-+|.++++..-.
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  193 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeec-CcccccccceeccccceEEEEECCCceEEee
Confidence            45678888899999999999988766542211 000000000  01 23444332      36789999988876543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.17  E-value=0.53  Score=44.14  Aligned_cols=65  Identities=17%  Similarity=0.219  Sum_probs=42.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeeeecccCcC---C-CEEE-EEeeCCCCCeEEEEeC------CCcEEEEeCCCCCCCCC
Q 010390          121 TNILTASGDQTIKIWDAEKKKCTGALMGHT---G-SIKS-LCSHPTNSDILVSGSR------DGSFAIWDLRCKSSPKS  188 (512)
Q Consensus       121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~---~-~v~~-l~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~  188 (512)
                      .+|+.++.|+.|.-.|.++|+.+..+....   . .++. -.+.  + ..++.+..      .|.|+-+|+++++.+-.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~--~-~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE--C-CeEEEeeccccccccCceEEEECCCCcEEEE
Confidence            468888899999999999998877664211   1 1111 1111  2 44555543      48899999999987643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.17  E-value=0.53  Score=44.14  Aligned_cols=49  Identities=8%  Similarity=-0.042  Sum_probs=31.9

Q ss_pred             CCCEEEEecCCCCEEEEecCCCCCCCceecc---ccCCeEEEEeCCCCCCeEEEE
Q 010390          331 NASHILSGSSDGNAYVWQVNKPQADPIKLKS---HDGEVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~l~s~  382 (512)
                      .+.+++.|+.||.++.+|.++++.....-.+   +..+++   |.-+|.++++..
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~t---Y~~dGkQYvav~  534 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT---YTHKGTQYVAIY  534 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE---EEETTEEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeE---EEECCEEEEEEE
Confidence            4678888999999999999999874322211   223333   444775666543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.03  E-value=0.49  Score=42.38  Aligned_cols=94  Identities=5%  Similarity=-0.045  Sum_probs=55.6

Q ss_pred             EEecCCCcEEEEe-----eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC----
Q 010390           59 CKTSKNSHIFAVS-----DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD----  129 (512)
Q Consensus        59 ~~~s~~~~~latg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d----  129 (512)
                      ..+|||++++|.+     +....|+++|+.+++...            ..+..  .....++|.+|++.|+-...+    
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~------------~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~  195 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP------------DVLER--VKFSCMAWTHDGKGMFYNAYPQQDG  195 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE------------EEEEE--ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecc------------ccccc--ccccceEEcCCCCEEEEEEeccccC
Confidence            3459999999875     223469999998874310            01110  111457899999988754332    


Q ss_pred             ------------CcEEEEeCCCCee--eecccC--cCCCEEEEEeeCCCCCeEE
Q 010390          130 ------------QTIKIWDAEKKKC--TGALMG--HTGSIKSLCSHPTNSDILV  167 (512)
Q Consensus       130 ------------g~i~iwd~~~~~~--~~~~~~--h~~~v~~l~~~~~~~~~l~  167 (512)
                                  ..|..|.+.+...  ...+..  ....+..+..+.++ .+++
T Consensus       196 ~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~-~~l~  248 (430)
T d1qfma1         196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVL  248 (430)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEE
T ss_pred             cccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCc-ceee
Confidence                        2577888776532  222222  23346667778877 4443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.86  E-value=0.35  Score=41.60  Aligned_cols=208  Identities=11%  Similarity=0.127  Sum_probs=108.1

Q ss_pred             eEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec----CC--CEEEEEeC
Q 010390           55 AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK----ED--TNILTASG  128 (512)
Q Consensus        55 ~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~----~~--~~l~s~~~  128 (512)
                      ||...+-.|+..+++...+++-|.+||++..+              +..+.  .+.++.|..-.    ++  .-|+.++.
T Consensus        30 AIW~n~~~p~~SlI~gTdK~~Gl~vYdL~G~~--------------l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasn   93 (353)
T d1h6la_          30 AIWLDPKNPQNSKLITTNKKSGLAVYSLEGKM--------------LHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASN   93 (353)
T ss_dssp             EEECCSSCGGGCEEEEEETTSCCEEEETTCCE--------------EEECC--SSCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEcCCCCcCccEEEEEcCcCCEEEEcCCCcE--------------EEecc--cCCcCccccccccccCCcceEEEEEeC
Confidence            44443334556777777888889999997542              22222  25666655432    22  23444442


Q ss_pred             --C--CcEEEEeCCC-CeeeecccC-------cCCCEEEEEe--eCCCCC-eEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390          129 --D--QTIKIWDAEK-KKCTGALMG-------HTGSIKSLCS--HPTNSD-ILVSGSRDGSFAIWDLRCKSSPKSNCAES  193 (512)
Q Consensus       129 --d--g~i~iwd~~~-~~~~~~~~~-------h~~~v~~l~~--~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  193 (512)
                        +  .+|.+|.+.. ...+..+..       -...+..+|+  ++.++. +++....+|.+..|.+.........    
T Consensus        94 R~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~----  169 (353)
T d1h6la_          94 RSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYIS----  169 (353)
T ss_dssp             CCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEE----
T ss_pred             CcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCcee----
Confidence              2  3577787642 222222221       1124667776  555433 5677778899999987533211100    


Q ss_pred             eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee-cccCCCccccccccc
Q 010390          194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI-TQAWPHAESSSAKET  272 (512)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~  272 (512)
                                      ...+ +.......+..+.+.+....|++ +-++..|..++..-..... ......     ....
T Consensus       170 ----------------~~lv-r~f~~~~q~EGCVvDde~~~Lyi-sEE~~Giw~~~a~~~~~~~~~~i~~~-----~g~~  226 (353)
T d1h6la_         170 ----------------GKKV-RAFKMNSQTEGMAADDEYGSLYI-AEEDEAIWKFSAEPDGGSNGTVIDRA-----DGRH  226 (353)
T ss_dssp             ----------------EEEE-EEEECSSCEEEEEEETTTTEEEE-EETTTEEEEEESSTTSCSCCEEEEEC-----SSSS
T ss_pred             ----------------eEee-eccCCCCccceEEEeCCCCcEEE-ecCccceEEEEeccCCCccceeeecc-----cCcc
Confidence                            0111 11122457889999998888888 4466666666554211100 000000     0111


Q ss_pred             cccCeeEEEeCC--C--CCEEEEEecCCeEEEEEccc
Q 010390          273 RLHGISSLSQDS--N--GVFLTASCMDHRIYLYNVLQ  305 (512)
Q Consensus       273 ~~~~i~~~~~~~--~--~~~l~~~~~dg~i~i~d~~~  305 (512)
                      ....+..|++-.  +  |-+|++.-.+++..+||...
T Consensus       227 l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         227 LTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             CCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             ccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            234466666432  2  33444444678899999643

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.79  E-value=0.23  Score=42.90  Aligned_cols=172  Identities=8%  Similarity=0.064  Sum_probs=94.3

Q ss_pred             cEEEEEEeecCCEEEEEee-----------cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-EE
Q 010390          222 SITSVLYLKDEVSIATASA-----------VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FL  289 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l  289 (512)
                      ...++...|++..++++|.           ..|.|.++|+.+....................+.+++ ++.-..+|. +|
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi-~l~~~~dg~~~L  114 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGI-STFIDDDNTVYL  114 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEE-EEEECTTCCEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccce-eEEEcCCCcEEE
Confidence            3456788888888887652           1488999998865433221110000000011122222 222245665 45


Q ss_pred             EEEe---cCCeEEEEEcccCCCCceEeeee--ceeceeEEEEEECCCCCEEEEecC---------------CCCEEEEec
Q 010390          290 TASC---MDHRIYLYNVLQLDKGPIQHFSG--CRIESFYVKSEICPNASHILSGSS---------------DGNAYVWQV  349 (512)
Q Consensus       290 ~~~~---~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~l~~g~~---------------dg~i~iw~~  349 (512)
                      ++..   ...+|.+|++...... +.....  +........+++..++.++++-..               -+...+|..
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~-l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEeccCCCceeEEEEEeCCCCe-EEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            5543   3467899988653322 221111  122233567777788888887321               123445544


Q ss_pred             CCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390          350 NKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR  397 (512)
Q Consensus       350 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~  397 (512)
                      +....  ......-...+.|+++||+..++++-+..+.|++|++....
T Consensus       194 ~~~~~--~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         194 SPNDV--RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             CSSCE--EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             cCCce--EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            44332  22222345689999999985566677788999999987544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.71  E-value=0.46  Score=44.44  Aligned_cols=25  Identities=12%  Similarity=0.320  Sum_probs=22.1

Q ss_pred             CCCEEEEecCCCCEEEEecCCCCCC
Q 010390          331 NASHILSGSSDGNAYVWQVNKPQAD  355 (512)
Q Consensus       331 ~~~~l~~g~~dg~i~iw~~~~~~~~  355 (512)
                      .+.++++|+.||.++.+|.++++.+
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEe
Confidence            5678888999999999999999874

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.71  E-value=0.25  Score=46.26  Aligned_cols=27  Identities=4%  Similarity=-0.044  Sum_probs=23.5

Q ss_pred             CeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          377 GKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       377 ~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      .++++|+.||.++.+|.++|+.+-.+.
T Consensus       489 glVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         489 NVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            688889999999999999999886544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=1.1  Score=38.76  Aligned_cols=118  Identities=12%  Similarity=0.108  Sum_probs=67.5

Q ss_pred             cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390           53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI  132 (512)
Q Consensus        53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i  132 (512)
                      ..-++.   ++...++++|+.++ ++|..++.-.................    .-..|..++|+-+  .|+.. .++.+
T Consensus        39 ~~LLAV---sn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~----~ip~v~~vafs~d--~l~v~-~~~~l  107 (381)
T d1xipa_          39 LQNLDI---SNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK----EIPDVIFVCFHGD--QVLVS-TRNAL  107 (381)
T ss_dssp             CBCEEE---ETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE----ECTTEEEEEEETT--EEEEE-ESSEE
T ss_pred             cceEEE---eCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc----CCCCeEEEEeeCC--EEEEE-eCCCE
Confidence            344555   77777888888775 66776432211000000001111111    1236889999744  45554 34567


Q ss_pred             EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC
Q 010390          133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS  184 (512)
Q Consensus       133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~  184 (512)
                      ..++..+-........-..++..+.++|   ..++....++.+.++++....
T Consensus       108 ~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~  156 (381)
T d1xipa_         108 YSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKS  156 (381)
T ss_dssp             EEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCc
Confidence            8887765433333333445788888877   456677778999999988654

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.15  E-value=0.92  Score=35.14  Aligned_cols=150  Identities=13%  Similarity=0.067  Sum_probs=87.5

Q ss_pred             CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee--cccC-------cCCCEEEEEeeCCCCCeEEEEeC-CCcEEEE
Q 010390          109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG--ALMG-------HTGSIKSLCSHPTNSDILVSGSR-DGSFAIW  178 (512)
Q Consensus       109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~-------h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vw  178 (512)
                      -.|.++++. +....++|+......+|-++.|+...  .+.+       ....|..+.+..-++.-|+++.. .|.++++
T Consensus       104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~  182 (313)
T d2hu7a1         104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  182 (313)
T ss_dssp             BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred             EEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence            356666653 34445588887778899888886432  2222       12345555554434345666665 7888888


Q ss_pred             eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec---CCeEEEEeccCccc
Q 010390          179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV---NSIVKFWDTRNLKA  255 (512)
Q Consensus       179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~---dg~i~iwd~~~~~~  255 (512)
                      +...                                      +.++...+.+..+.  +++.+   .....-+|++.++.
T Consensus       183 tpke--------------------------------------GS~~~ay~~~gnKV--~sdyEt~gEsywit~D~~s~~y  222 (313)
T d2hu7a1         183 DSGE--------------------------------------GSFSSASISPGMKV--TAGLETAREARLVTVDPRDGSV  222 (313)
T ss_dssp             CCSS--------------------------------------EEEEEEEECTTSCE--EEEEEESSCEEEEEECTTTCCE
T ss_pred             cCCC--------------------------------------CcccceeEccCcee--eeccCCCCceEEEEEecccCce
Confidence            7653                                      35666666665554  22321   12222457776654


Q ss_pred             eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEc
Q 010390          256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV  303 (512)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~  303 (512)
                      .........    ...-....|+.+-+.|++++++.+-.||.-++|.-
T Consensus       223 erve~P~kd----~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         223 EDLELPSKD----FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  266 (313)
T ss_dssp             EECCCSSCH----HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             eeeecCccc----ceeecceEEEeeeeCCCCcEEEEEecCCchheeec
Confidence            432211110    11122234677779999999999999999999983

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.17  E-value=3.3  Score=38.38  Aligned_cols=59  Identities=7%  Similarity=-0.108  Sum_probs=35.6

Q ss_pred             CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390          342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS  403 (512)
Q Consensus       342 g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  403 (512)
                      |.|.-+|+.+++.......+  .++.+-..+-.+ .++++|+.||.++.+|.++|+.+-.+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~--~p~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES--SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC--CCCccceeEEcC-CeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            44666666666543222111  111111122344 688889999999999999999886544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.91  E-value=2.7  Score=37.46  Aligned_cols=54  Identities=17%  Similarity=0.177  Sum_probs=39.2

Q ss_pred             CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee--ecc------cCcCCCEEEEEeeCC
Q 010390          108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT--GAL------MGHTGSIKSLCSHPT  161 (512)
Q Consensus       108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~------~~h~~~v~~l~~~~~  161 (512)
                      -..-++|+|.|+++.|++--..|.|++++..+++..  ..+      ..-.+....|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            457789999999998887655799999998776432  211      112356789999985

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.41  E-value=2.8  Score=35.70  Aligned_cols=121  Identities=7%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             CeeEEEe--CCC-CC-EEEEEecCCeEEEEEcccCCCCce--EeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEec
Q 010390          276 GISSLSQ--DSN-GV-FLTASCMDHRIYLYNVLQLDKGPI--QHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQV  349 (512)
Q Consensus       276 ~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~  349 (512)
                      .+..+++  ++. +. ++++...+|.+..|.+.......+  ...........+-.+.+....+.|+.+-++.-|..++.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a  208 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSA  208 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEe
Confidence            4666666  553 44 566777889999998754332211  12222223344666889899899998887765655655


Q ss_pred             CCCCCCCcee----c--cccCCeEEEEeC--CCCC-CeEEEEeCCCcEEEEeCCCC
Q 010390          350 NKPQADPIKL----K--SHDGEVTAVNWC--PNEA-GKIVTSSDDYTVRLWSLENS  396 (512)
Q Consensus       350 ~~~~~~~~~~----~--~h~~~v~~v~~~--~~~~-~~l~s~~~dg~i~vwd~~~~  396 (512)
                      .........+    .  .....+-.|+.-  .++. .+|+|.-.|++..|||..+.
T Consensus       209 ~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         209 EPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             STTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             ccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            4221111111    1  134567777753  3332 44555556789999998763

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.55  E-value=13  Score=34.01  Aligned_cols=53  Identities=8%  Similarity=0.107  Sum_probs=33.3

Q ss_pred             CCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEE
Q 010390          330 PNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTS  382 (512)
Q Consensus       330 ~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~  382 (512)
                      ..+.++++|+.||.++.+|.++++.+...-.+....-.-+.|..+|.++++..
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            35678888999999999999999874322222111111145556775565543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.92  E-value=12  Score=32.05  Aligned_cols=141  Identities=8%  Similarity=0.004  Sum_probs=77.9

Q ss_pred             cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390          222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY  301 (512)
Q Consensus       222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~  301 (512)
                      .|..++|+.+  .+++.  .++.+..++.........           ......++..+.+.|.  .++....+|.+.++
T Consensus        88 ~v~~vafs~d--~l~v~--~~~~l~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~  150 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS--TRNALYSLDLEELSEFRT-----------VTSFEKPVFQLKNVNN--TLVILNSVNDLSAL  150 (381)
T ss_dssp             TEEEEEEETT--EEEEE--ESSEEEEEESSSTTCEEE-----------EEECSSCEEEEEECSS--EEEEEETTSEEEEE
T ss_pred             CeEEEEeeCC--EEEEE--eCCCEEEEEeeccccccc-----------cccccccccceecCCc--eeEEEecCCCEEEE
Confidence            5788888644  45543  367788888776543322           1112245677777664  56667789999999


Q ss_pred             EcccCCCCceEe-eeeceeceeEEEEEECCCCCEEEEecCCCCEEEE-ecCCCCCCCceeccccCCeEEEEeCCCCCCeE
Q 010390          302 NVLQLDKGPIQH-FSGCRIESFYVKSEICPNASHILSGSSDGNAYVW-QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKI  379 (512)
Q Consensus       302 d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw-~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l  379 (512)
                      ++.+.....+.. ..+........+++|++.|..++++..++ ..+- ++..... +.........|.+|.|-.+. .++
T Consensus       151 ~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~-~~~p~~~~~~v~sI~WL~~~-~F~  227 (381)
T d1xipa_         151 DLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSE-LEELPVEEYSPLSVTILSPQ-DFL  227 (381)
T ss_dssp             ETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHH-HHTSCTTTSEEEEEEESSSS-EEE
T ss_pred             EeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccc-cCCCcCCCcceeEEEEecCc-eEE
Confidence            987754322211 11112223466788888888887774332 2221 1211110 00011234568899998765 455


Q ss_pred             EEE
Q 010390          380 VTS  382 (512)
Q Consensus       380 ~s~  382 (512)
                      +.-
T Consensus       228 vvy  230 (381)
T d1xipa_         228 AVF  230 (381)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544